WorldWideScience

Sample records for chemotactic gradient labchip

  1. Effects of Garlic Oil on the Migration of Neutrophil-Like Cell Studied by Using a Chemotactic Gradient Labchip

    Directory of Open Access Journals (Sweden)

    Po-Chen Shih

    2010-01-01

    Full Text Available We have designed and fabricated a novel chemotactic gradient Labchip for studying cell migration quantitatively. Owing to the great potential of garlic and its preparations in developing antiinflammatory drugs, the aim of the present study is to investigate the effect of garlic oil on the locomotion of a neutrophil-like cell by measuring the dynamic features of cell migration including migration direction, average migration speed, chemotactic index (CI, and motility index (MI with the newly designed Labchip. We found that garlic oil treatment lowered the values of CI and MI and reduced the average speed of cell migration from 13 to 8 μm/min. The results indicate that garlic oil is a potential inhibitor for neutrophil-like cell migration and chemotactic responsiveness. By comparing with the effects of nocodazole and cytochalasin B, we also suggest that the antiinflammatory activity exhibited by garlic oil was mainly through inhibiting the assembly-disassembly processes of the cytoskeleton.

  2. Gradient sensing in defined chemotactic fields.

    Science.gov (United States)

    Skoge, Monica; Adler, Micha; Groisman, Alex; Levine, Herbert; Loomis, William F; Rappel, Wouter-Jan

    2010-11-01

    Cells respond to a variety of secreted molecules by modifying their physiology, growth patterns, and behavior. Motile bacteria and eukaryotic cells can sense extracellular chemoattractants and chemorepellents and alter their movement. In this way fibroblasts and leukocytes can find their way to sites of injury and cancer cells can home in on sites that are releasing growth factors. Social amoebae such as Dictyostelium are chemotactic to cAMP which they secrete several hours after they have initiated development. These eukaryotic cells are known to be able to sense extremely shallow gradients but the processes underlying their exquisite sensitivity are still largely unknown. In this study we determine the responses of developed cells of Dictyostelium discoideum to stable linear gradients of cAMP of varying steepness generated in 2 μm deep gradient chambers of microfluidic devices. The gradients are generated by molecular diffusion between two 80 μm deep flow-through channels, one of which is perfused with a solution of cAMP and the other with buffer, serving as continuously replenished source and sink. These low ceiling gradient chambers constrained the cells in the vertical dimension, facilitating confocal imaging, such that subcellular localization of fluorescently tagged proteins could be followed for up to 30 min without noticeable phototoxicity. Chemotactic cells enter these low ceiling chambers by flattening and elongating and then move almost as rapidly as unconstrained cells. By following the localization of activated Ras (RasGTP) using a Ras Binding Domain fused to Green Fluorescent Protein (RBD-GFP), we observed the rapid appearance of membrane associated patches at the tips of pseudopods. These patches remained associated with pseudopods while they continued to extend but were rapidly disassembled when pseudopods stalled and the cell moved past them. Likewise, fluorescence associated with localized RasGTP rapidly disappeared when the gradient was turned

  3. Dynamics of Chemotactic Droplets in Salt Concentration Gradients

    DEFF Research Database (Denmark)

    Cejkova, J.; Novak, M.; Stepanek, F.;

    2014-01-01

    The chemotactic movement of decanol droplets in aqueous solutions of sodium decanoate in response to concentration gradients of NaCl has been investigated. Key parameters of the chemotactic response, namely the induction time and the migration velocity, have been evaluated as a function of the so...

  4. Gradient sensing in defined chemotactic fields

    OpenAIRE

    Skoge, Monica; Adler, Micha; Groisman, Alex; Levine, Herbert; Loomis, William F.; Rappel, Wouter-Jan

    2010-01-01

    Cells respond to a variety of secreted molecules by modifying their physiology, growth patterns, and behavior. Motile bacteria and eukaryotic cells can sense extracellular chemoattractants and chemorepellents and alter their movement. In this way fibroblasts and leukocytes can find their ways to sites of injury and cancer cells can home in on sites that are releasing growth factors. Social amoebae such as Dictyostelium are chemotactic to cAMP which they secrete several hours after they have i...

  5. Tracking Chemotactic Migration of a Genetically Engineered Bacterium in the Presence of Constructed Nutrient Gradients Within a Sandy Aquifer in Cape Cod, Massachusetts

    Science.gov (United States)

    Harvey, R. W.; Ford, R. M.; Metge, D. W.; Wang, M.; Toepfer, A. A.; McGowan, S. B.

    2008-05-01

    Due to our increasing dependence upon groundwater resources, there is a growing need to remediate shallow aquifers contaminated with chlorinated solvents. Often, trichloroethene (TCE) travels into zones of low permeability thereby making removal difficult by traditional pump-and-treat technologies. In addition, degradation of TCE by native microbial communities can result in buildup of highly toxic intermediates such as vinyl chloride. Bioaugmentation, involving addition of specialized bacterial consortia to an aquifer, can facilitate more complete degradation into harmless byproducts. Also, it is believed that chemotaxis, the ability of bacteria to swim towards higher concentrations of a chemical perceived as beneficial to survival, may expedite movement of introduced bacteria to where they are needed. However, there is no quantitative information about chemotaxis at the field scale and the evidence for bacterial chemotaxis during bioaugmentation has been largely anecdotal. In this study, the chemotactic migration of the bacterium, Pseudomonas stutzeri in a TCE-contaminated, sand- and-gravel aquifer in Cape Cod, Massachusetts was measured. P. stutzeri is known to denitrify as well as degrade a variety of aromatic and chlorinated solvents and is often advocated as a candidate for bioaugmentation. This bacterium was genetically engineered to be resistant to ampicillin and produce blue- fluorescing protein (BFP) in order to facilitate maintaining the bacteria in pure culture and later to track them in the environment. The study involved a natural-gradient injection and recovery test in which vertical gradients of an electron donor (acetate) and acceptor (nitrate) were created within the sandy aquifer sediments above an amendment of the genetically engineered P. stutzeri. The bacteria, nitrate, and acetate were allowed to be advected with the natural flow of groundwater past close-interval, multi-level samplers that were installed downgradient from the points of

  6. Identification of a chemotactic sensitivity in a coupled system

    CERN Document Server

    Fister, K Renee

    2007-01-01

    Chemotaxis is the process by which cells behave in a way that follows the chemical gradient. Applications to bacteria growth, tissue inflammation, and vascular tumors provide a focus on optimization strategies. Experiments can characterize the form of possible chemotactic sensitivities. This paper addresses the recovery of the chemotactic sensitivity from these experiments while allowing for nonlinear dependence of the parameter on the state variables. The existence of solutions to the forward problem is analyzed. The identification of a chemotactic parameter is determined by inverse problem techniques. Tikhonov regularization is investigated and appropriate convergence results are obtained. Numerical results of concentration dependent chemotactic terms are explored.

  7. Critical chemotactic collapse

    OpenAIRE

    Lushnikov, Pavel M.

    2009-01-01

    A Keller-Segel model describes macroscopic dynamics of bacterial colonies and biological cells. Bacteria secret chemical which attracts other bacteria so that they move towards chemical gradient creating nonlocal attraction between bacteria. If bacterial density exceeds a critical value then the density collapses (blows up) in a finite time which corresponds to bacterial aggregation. Collapse in the Keller-Segel model has striking qualitative similarities with a nonlinear Schrodinger equation...

  8. Psoriasin: a novel chemotactic protein

    DEFF Research Database (Denmark)

    Jinquan, T; Vorum, H; Larsen, C G;

    1996-01-01

    inflammatory protein for CD4+ T lymphocytes and neutrophils at concentrations of about 10(-11) M. Psoriasin is not structurally related to the alpha or the beta chemokine subfamilies or to lymphotactin, a member of a newly described class of chemokines. Thus, we have observed a chemotactic protein outside...... the chemokine subfamilies that could be an important new inflammatory mediator. Udgivelsesdato: 1996-Jul...

  9. Critical chemotactic collapse

    Science.gov (United States)

    Lushnikov, Pavel M.

    2010-04-01

    A Keller-Segel model describes macroscopic dynamics of bacterial colonies and biological cells as well as dynamics of a gas of self-gravitating Brownian particles. Bacteria secret chemical which attracts other bacteria so that they move towards chemical gradient creating nonlocal attraction between bacteria. If bacterial (or Brownian particle) density exceeds a critical value then the density collapses (blows up) in a finite time which corresponds to bacterial aggregation or gravitational collapse. Collapse in the Keller-Segel model has striking qualitative similarities with a nonlinear Schrödinger equation including critical collapse in two dimensions and supercritical collapse in three dimensions. A self-similar solution near blow up point is studied in the critical two-dimensional case and it has a form of a rescaled steady state solution which contains a critical number of bacteria. Time dependence of scaling of that solution has square root scaling law with logarithmic modification.

  10. Critical chemotactic collapse

    International Nuclear Information System (INIS)

    A Keller-Segel model describes macroscopic dynamics of bacterial colonies and biological cells as well as dynamics of a gas of self-gravitating Brownian particles. Bacteria secret chemical which attracts other bacteria so that they move towards chemical gradient creating nonlocal attraction between bacteria. If bacterial (or Brownian particle) density exceeds a critical value then the density collapses (blows up) in a finite time which corresponds to bacterial aggregation or gravitational collapse. Collapse in the Keller-Segel model has striking qualitative similarities with a nonlinear Schroedinger equation including critical collapse in two dimensions and supercritical collapse in three dimensions. A self-similar solution near blow up point is studied in the critical two-dimensional case and it has a form of a rescaled steady state solution which contains a critical number of bacteria. Time dependence of scaling of that solution has square root scaling law with logarithmic modification.

  11. Critical chemotactic collapse

    Energy Technology Data Exchange (ETDEWEB)

    Lushnikov, Pavel M., E-mail: plushnik@math.unm.ed [Department of Mathematics and Statistics, University of New Mexico, Albuquerque, NM 87131 (United States)

    2010-04-05

    A Keller-Segel model describes macroscopic dynamics of bacterial colonies and biological cells as well as dynamics of a gas of self-gravitating Brownian particles. Bacteria secret chemical which attracts other bacteria so that they move towards chemical gradient creating nonlocal attraction between bacteria. If bacterial (or Brownian particle) density exceeds a critical value then the density collapses (blows up) in a finite time which corresponds to bacterial aggregation or gravitational collapse. Collapse in the Keller-Segel model has striking qualitative similarities with a nonlinear Schroedinger equation including critical collapse in two dimensions and supercritical collapse in three dimensions. A self-similar solution near blow up point is studied in the critical two-dimensional case and it has a form of a rescaled steady state solution which contains a critical number of bacteria. Time dependence of scaling of that solution has square root scaling law with logarithmic modification.

  12. Polymeric LabChip real-time PCR as a point-of-care-potential diagnostic tool for rapid detection of influenza A/H1N1 virus in human clinical specimens.

    Directory of Open Access Journals (Sweden)

    Hyun-Ok Song

    Full Text Available It is clinically important to be able to detect influenza A/H1N1 virus using a fast, portable, and accurate system that has high specificity and sensitivity. To achieve this goal, it is necessary to develop a highly specific primer set that recognizes only influenza A viral genes and a rapid real-time PCR system that can detect even a single copy of the viral gene. In this study, we developed and validated a novel fluidic chip-type real-time PCR (LabChip real-time PCR system that is sensitive and specific for the detection of influenza A/H1N1, including the pandemic influenza strain A/H1N1 of 2009. This LabChip real-time PCR system has several remarkable features: (1 It allows rapid quantitative analysis, requiring only 15 min to perform 30 cycles of real-time PCR. (2 It is portable, with a weight of only 5.5 kg. (3 The reaction cost is low, since it uses disposable plastic chips. (4 Its high efficiency is equivalent to that of commercially available tube-type real-time PCR systems. The developed disposable LabChip is an economic, heat-transferable, light-transparent, and easy-to-fabricate polymeric chip compared to conventional silicon- or glass-based labchip. In addition, our LabChip has large surface-to-volume ratios in micro channels that are required for overcoming time consumed for temperature control during real-time PCR. The efficiency of the LabChip real-time PCR system was confirmed using novel primer sets specifically targeted to the hemagglutinin (HA gene of influenza A/H1N1 and clinical specimens. Eighty-five human clinical swab samples were tested using the LabChip real-time PCR. The results demonstrated 100% sensitivity and specificity, showing 72 positive and 13 negative cases. These results were identical to those from a tube-type real-time PCR system. This indicates that the novel LabChip real-time PCR may be an ultra-fast, quantitative, point-of-care-potential diagnostic tool for influenza A/H1N1 with a high sensitivity and

  13. Stability and dynamics of anisotropically-tumbling chemotactic swimmers

    CERN Document Server

    Lushi, Enkeleida

    2016-01-01

    Micro-swimmers such as bacteria E. coli are known to perform random walks known as run-and-tumbles to move up chemo-attractant gradients and as a result aggregate. It is also known that such micro-swimmers can self-organize into macroscopic patterns due to interactions with neighboring cells through the fluidic environment they live in. While the pattern formation resulting from chemotactic and hydrodynamic interactions separately and together have been previously investigated, the effect of the tumbling anisotropy in micro-swimmers has been unexplored. Here we show through linear analysis and full nonlinear simulations that the slight anisotropy in the individual swimmer tumbles can alter the collective pattern formation in non-trivial ways. We show that the tumbling anisotropy diminishes the magnitude of the chemotactic aggregates but may result in more such aggregation peaks.

  14. Human sperm pattern of movement during chemotactic re-orientation towards a progesterone source

    Institute of Scientific and Technical Information of China (English)

    Cecilia Soledad Blengini; Maria Eugenia Teves; Diego Rafael Unates; Hector Alejandro Guidobaldi; Laura Virginia Gatica; Laura Cecilia Giojalas

    2011-01-01

    @@ Human spermatozoa may chemotactically find out the egg by following an increasing gradient of attractant molecules.Although human spermatozoa have been observed to show several of the physiological characteristics of chemotaxis,the chemotactic pattern of movement has not been easy to describe.However,it is apparent that chemotactic cells may be identified while returning to the attractant source.This study characterizes the pattern of movement of human spermatozoa during chemotactic re-orientation towards a progesterone source,which is a physiological attractant candidate.By means of videomicroscopy and image analysis,a chemotactic pattern of movement was identified as the spermatozoon returned towards the source of a chemotactic concentration of progesterone (10 pmol l-1).First,as a continuation of its original path,the spermatozoon swims away from the progesterone source with linear movement and then turns back with a transitional movement that can be characterized by an increased velocity and decreased linearity.This sperm behaviour may help the spermatozoon to re-orient itself towards a progesterone source and may be used to identify the few cells that are undergoing chemotaxis at a given time.

  15. Controlling neural activity in Caenorhabditis elegans to evoke chemotactic behavior

    Science.gov (United States)

    Kocabas, Askin; Shen, Ching-Han; Guo, Zengcai V.; Ramanathan, Sharad

    2013-03-01

    Animals locate and track chemoattractive gradients in the environment to find food. With its simple nervous system, Caenorhabditis elegans is a good model system in which to understand how the dynamics of neural activity control this search behavior. To understand how the activity in its interneurons coordinate different motor programs to lead the animal to food, here we used optogenetics and new optical tools to manipulate neural activity directly in freely moving animals to evoke chemotactic behavior. By deducing the classes of activity patterns triggered during chemotaxis and exciting individual neurons with these patterns, we identified interneurons that control the essential locomotory programs for this behavior. Notably, we discovered that controlling the dynamics of activity in just one interneuron pair was sufficient to force the animal to locate, turn towards and track virtual light gradients.

  16. Jeans type analysis of chemotactic collapse

    CERN Document Server

    Chavanis, Pierre-Henri

    2007-01-01

    We perform a linear dynamical stability analysis of a general hydrodynamic model of chemotactic aggregation [Chavanis & Sire, Physica A, in press (2007)]. Specifically, we study the stability of an infinite and homogeneous distribution of cells against ``chemotactic collapse''. We discuss the analogy between the chemotactic collapse of biological populations and the gravitational collapse (Jeans instability) of self-gravitating systems. Our hydrodynamic model involves a pressure force which can take into account several effects like anomalous diffusion or the fact that the organisms cannot interpenetrate. We also take into account the degradation of the chemical which leads to a shielding of the interaction like for a Yukawa potential. Finally, our hydrodynamic model involves a friction force which quantifies the importance of inertial effects. In the strong friction limit, we obtain a generalized Keller-Segel model similar to the generalized Smoluchowski-Poisson system describing self-gravitating Langevi...

  17. Chemotactic effect of urokinase-type plasminogen activator on mouse spermatozoa in vitro

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    The aim of this study is to investigate the chemotactic effect of urokinase-type plasminogen activator (uPA)on mouse spermatozoa.Capillary assays were applied to study the chemotactic activity of ascending and descending gradients of uPA.Firstly,the chemotactic effect of an ascending gradient of uPA on mouse spermatozoa was observed by counting the number of spermatozoa that migrated into the capillary after incubation with uPA for 5,10,20,and 30 min,respectively,compared with that after incubation with F10.Twenty minutes was a suitable incubation time to obtain a plateau of sperm accumulation.Meanwhile,to confirm the specific effect of uPA on mouse sperm chemotaxis,uPA inhibitor (PAI-1)and anti-uPAR rabbit IgG were added to the test solution containing 20 U/mL uPA,respectively.To exclude the possibility that PAI-1 and anti-uPAR rabbit IgG may affect sperm accumulation nonspecifically,PAIl and anti-uPAR rabbit IgG were added to F10,respectively.It was found that the chemotactic effect of uPA was neutralized completely by PAI-1 and anti-uPAR rabbit IgG.PAI-1 and anti-uPAR rabbit IgG had no neutralizing effect on the sperm chemotactic effect.Lastly,the sperm chemotaxis response to a descending gradient of uPA was also observed.Taken together,the results suggest that uPA can induce sperm chemotaxis in vitro by binding to its receptor on the sperm membrane and may act as a chemoattractant in precontacting sperm-egg communication thereby increasing the chance encounter of spermatozoa and eggs.

  18. Nicotine is Chemotactic for Neutrophils and Enhances Neutrophil Responsiveness to Chemotactic Peptides

    Science.gov (United States)

    Totti, Noel; McCusker, Kevin T.; Campbell, Edward J.; Griffin, Gail L.; Senior, Robert M.

    1984-01-01

    Neutrophils contribute to chronic bronchitis and pulmonary emphysema associated with cigarette smoking. Nicotine was found to be chemotactic for human neutrophils but not monocytes, with a peak activity at ~ 31 micromolar. In lower concentrations (comparable to those in smokers' plasma), nicotine enhanced the response of neutrophils to two chemotactic peptides. In contrast to most other chemoattractants for neutrophils, however, nicotine did not affect degranulation or superoxide production. Nicotine thus may promote inflammation and consequent lung injury in smokers.

  19. Study of the Chemotactic Response of Multicellular Spheroids in a Microfluidic Device

    OpenAIRE

    Jose M Ayuso; Basheer, Haneen A.; Rosa Monge; Pablo Sánchez-Álvarez; Manuel Doblaré; Shnyder, Steven D.; Victoria Vinader; Kamyar Afarinkia; Luis J Fernández; Ignacio Ochoa

    2015-01-01

    We report the first application of a microfluidic device to observe chemotactic migration in multicellular spheroids. A microfluidic device was designed comprising a central microchamber and two lateral channels through which reagents can be introduced. Multicellular spheroids were embedded in collagen and introduced to the microchamber. A gradient of fetal bovine serum (FBS) was established across the central chamber by addition of growth media containing serum into one of the lateral channe...

  20. Kinetic and hydrodynamic models of chemotactic aggregation

    CERN Document Server

    Chavanis, Pierre-Henri

    2007-01-01

    We derive general kinetic and hydrodynamic models of chemotactic aggregation that describe certain features of the morphogenesis of biological colonies (like bacteria, amoebae, endothelial cells or social insects). Starting from a stochastic model defined in terms of N coupled Langevin equations, we derive a nonlinear mean field Fokker-Planck equation governing the evolution of the distribution function of the system in phase space. By taking the successive moments of this kinetic equation and using a local thermodynamic equilibrium condition, we derive a set of hydrodynamic equations involving a damping term. In the limit of small frictions, we obtain a hyperbolic model describing the formation of network patterns (filaments) and in the limit of strong frictions we obtain a parabolic model which is a generalization of the standard Keller-Segel model describing the formation of clusters (clumps). Our approach connects and generalizes several models introduced in the chemotactic literature. We discuss the anal...

  1. Jeans type analysis of chemotactic collapse

    Science.gov (United States)

    Chavanis, Pierre-Henri; Sire, Clément

    2008-07-01

    We perform a linear dynamical stability analysis of a general hydrodynamic model of chemotactic aggregation [P.H. Chavanis, C. Sire, Physica A 384 (2007) 199]. Specifically, we study the stability of an infinite and homogeneous distribution of cells against “chemotactic collapse”. We discuss the analogy between the chemotactic collapse of biological populations and the gravitational collapse (Jeans instability) of self-gravitating systems. Our hydrodynamic model involves a pressure force which can take into account several effects like anomalous diffusion or the fact that the organisms cannot interpenetrate. We also take into account the degradation of the chemical which leads to a shielding of the interaction like for a Yukawa potential. Finally, our hydrodynamic model involves a friction force which quantifies the importance of inertial effects. In the strong friction limit, we obtain a generalized Keller-Segel model similar to the generalized Smoluchowski-Poisson system describing self-gravitating Langevin particles. For small frictions, we obtain a hydrodynamic model of chemotaxis similar to the Euler-Poisson system describing a self-gravitating barotropic gas. We show that an infinite and homogeneous distribution of cells is unstable against chemotactic collapse when the “velocity of sound” in the medium is smaller than a critical value. We study in detail the linear development of the instability and determine the range of unstable wavelengths, the growth rate of unstable modes and the damping rate, or the pulsation frequency, of the stable modes as a function of the friction parameter and shielding length. For specific equations of state, we express the stability criterion in terms of cell density.

  2. Enhanced Retention of Chemotactic Bacteria in a Pore Network with Residual NAPL Contamination

    Science.gov (United States)

    Ford, R.; Wang, X.

    2013-12-01

    Nonaqueous phase liquid (NAPL) contaminants are difficult to eliminate from natural aquifers due, in part, to the heterogeneous structure of the soil matrix. Residual NAPL ganglia remain trapped in regions where the hydraulic conductivity is relatively low. Bioremediation processes depend on adequate mixing of microbial populations and the groundwater contaminants that they degrade. The ability of bacteria to sense a chemical gradient and swim preferentially toward locations of higher concentration, known as chemotaxis, can enhance the mixing of bacteria with contaminant sources that may not be readily accessible by advection and dispersion alone. The impact of chemotaxis on bacterial abundance within a low conductivity NAPL-contaminated region of a well-characterized porous matrix was investigated. A microfluidic device was designed to mimic heterogeneous features of a contaminated groundwater system. NAPL ganglia (toluene) were trapped within a fine pore network, and bacteria were injected into the system through a highly conductive adjacent channel. Chemotactic bacteria (P. putida F1) migrated preferentially towards and accumulated in the vicinity of NAPL contaminant sources. The accumulation of chemotactic bacteria was 15% greater in comparison to a nonchemotactic mutant (P. putida F1 CheA). Bacteria in the microfluidic device were subjected to different flow velocities from 0.25 to 5 m/d encompassing the range of typical groundwater flow rates. Chemotactic bacteria exhibited greater accumulation near the intersection between the macrochannel and the porous network at a flow velocity of 0.5 m/d than both the nonchemotactic mutant control and the chemotactic bacteria at a higher flow velocity of 5 m/d. Breakthrough curves observed at the outlet provided indirect evidence that chemotactic bacteria were retained within the contaminated low permeable region for a longer time than the nonchemotactic bacteria at a flow velocity of 0.25 m/d. This retention was

  3. Auto-chemotactic micro-swimmer suspensions: modeling, analysis and simulations

    CERN Document Server

    Lushi, Enkeleida; Shelley, Michael J

    2013-01-01

    Microorganisms can preferentially orient and move along gradients of a chemo-attractant (i.e., chemotax) while colonies of many microorganisms can collectively undergo complex dynamics in response to chemo-attractants that they themselves produce. For colonies or groups of micro-swimmers we investigate how an "auto-chemotactic" response that should lead to swimmer aggregation is affected by the non-trivial fluid flows that are generated by collective swimming. For this, we consider chemotaxis models based upon a hydrodynamic theory of motile suspensions that are fully coupled to chemo-attractant production, transport, and diffusion. Linear analysis of isotropically ordered suspensions reveals both an aggregative instability due to chemotaxis that occurs independently of swimmer type, and a hydrodynamic instability when the swimmers are "pushers". Nonlinear simulations show nonetheless that hydrodynamic interactions can significantly modify the chemotactically-driven aggregation dynamics in suspensions of "pus...

  4. Mathematics of Experimentally Generated Chemoattractant Gradients

    NARCIS (Netherlands)

    Postma, Marten; van Haastert, Peter J M; Jin, Tian; Hereld, Dale

    2016-01-01

    Many eukaryotic cells move in the direction of a chemical gradient. Several assays have been developed to measure this chemotactic response, but no complete mathematical models of the spatial and temporal gradients are available to describe the fundamental principles of chemotaxis. Here we provide a

  5. Automated Chemotactic Sorting and Single-cell Cultivation of Microbes using Droplet Microfluidics

    Science.gov (United States)

    Dong, Libing; Chen, Dong-Wei; Liu, Shuang-Jiang; Du, Wenbin

    2016-04-01

    We report a microfluidic device for automated sorting and cultivation of chemotactic microbes from pure cultures or mixtures. The device consists of two parts: in the first part, a concentration gradient of the chemoeffector was built across the channel for inducing chemotaxis of motile cells; in the second part, chemotactic cells from the sample were separated, and mixed with culture media to form nanoliter droplets for encapsulation, cultivation, enumeration, and recovery of single cells. Chemotactic responses were assessed by imaging and statistical analysis of droplets based on Poisson distribution. An automated procedure was developed for rapid enumeration of droplets with cell growth, following with scale-up cultivation on agar plates. The performance of the device was evaluated by the chemotaxis assays of Escherichia coli (E. coli) RP437 and E. coli RP1616. Moreover, enrichment and isolation of non-labelled Comamonas testosteroni CNB-1 from its 1:10 mixture with E. coli RP437 was demonstrated. The enrichment factor reached 36.7 for CNB-1, based on its distinctive chemotaxis toward 4-hydroxybenzoic acid. We believe that this device can be widely used in chemotaxis studies without necessarily relying on fluorescent labelling, and isolation of functional microbial species from various environments.

  6. Chemotactic selection of pollutant degrading soil bacteria

    Energy Technology Data Exchange (ETDEWEB)

    Hazen, T.C.

    1991-03-04

    A method is described for identifying soil microbial strains which may be bacterial degraders of pollutants. This method includes: Placing a concentration of a pollutant in a substantially closed container; placing the container in a sample of soil for a period of time ranging from one minute to several hours; retrieving the container and collecting its contents; microscopically determining the identity of the bacteria present. Different concentrations of the pollutant can be used to determine which bacteria respond to each concentration. The method can be used for characterizing a polluted site or for looking for naturally occurring biological degraders of the pollutant. Then bacteria identified as degraders of the pollutant and as chemotactically attracted to the pollutant are used to innoculate contaminated soil. To enhance the effect of the bacteria on the pollutant, nutrients are cyclicly provided to the bacteria then withheld to alternately build up the size of the bacterial colony or community and then allow it to degrade the pollutant.

  7. Study of the Chemotactic Response of Multicellular Spheroids in a Microfluidic Device.

    Directory of Open Access Journals (Sweden)

    Jose M Ayuso

    Full Text Available We report the first application of a microfluidic device to observe chemotactic migration in multicellular spheroids. A microfluidic device was designed comprising a central microchamber and two lateral channels through which reagents can be introduced. Multicellular spheroids were embedded in collagen and introduced to the microchamber. A gradient of fetal bovine serum (FBS was established across the central chamber by addition of growth media containing serum into one of the lateral channels. We observe that spheroids of oral squamous carcinoma cells OSC-19 invade collectively in the direction of the gradient of FBS. This invasion is more directional and aggressive than that observed for individual cells in the same experimental setup. In contrast to spheroids of OSC-19, U87-MG multicellular spheroids migrate as individual cells. A study of the exposure of spheroids to the chemoattractant shows that the rate of diffusion into the spheroid is slow and thus, the chemoattractant wave engulfs the spheroid before diffusing through it.

  8. Study of the Chemotactic Response of Multicellular Spheroids in a Microfluidic Device.

    Science.gov (United States)

    Ayuso, Jose M; Basheer, Haneen A; Monge, Rosa; Sánchez-Álvarez, Pablo; Doblaré, Manuel; Shnyder, Steven D; Vinader, Victoria; Afarinkia, Kamyar; Fernández, Luis J; Ochoa, Ignacio

    2015-01-01

    We report the first application of a microfluidic device to observe chemotactic migration in multicellular spheroids. A microfluidic device was designed comprising a central microchamber and two lateral channels through which reagents can be introduced. Multicellular spheroids were embedded in collagen and introduced to the microchamber. A gradient of fetal bovine serum (FBS) was established across the central chamber by addition of growth media containing serum into one of the lateral channels. We observe that spheroids of oral squamous carcinoma cells OSC-19 invade collectively in the direction of the gradient of FBS. This invasion is more directional and aggressive than that observed for individual cells in the same experimental setup. In contrast to spheroids of OSC-19, U87-MG multicellular spheroids migrate as individual cells. A study of the exposure of spheroids to the chemoattractant shows that the rate of diffusion into the spheroid is slow and thus, the chemoattractant wave engulfs the spheroid before diffusing through it. PMID:26444904

  9. Study of the Chemotactic Response of Multicellular Spheroids in a Microfluidic Device

    Science.gov (United States)

    Ayuso, Jose M.; Basheer, Haneen A.; Monge, Rosa; Sánchez-Álvarez, Pablo; Doblaré, Manuel; Shnyder, Steven D.; Vinader, Victoria; Afarinkia, Kamyar

    2015-01-01

    We report the first application of a microfluidic device to observe chemotactic migration in multicellular spheroids. A microfluidic device was designed comprising a central microchamber and two lateral channels through which reagents can be introduced. Multicellular spheroids were embedded in collagen and introduced to the microchamber. A gradient of fetal bovine serum (FBS) was established across the central chamber by addition of growth media containing serum into one of the lateral channels. We observe that spheroids of oral squamous carcinoma cells OSC–19 invade collectively in the direction of the gradient of FBS. This invasion is more directional and aggressive than that observed for individual cells in the same experimental setup. In contrast to spheroids of OSC–19, U87-MG multicellular spheroids migrate as individual cells. A study of the exposure of spheroids to the chemoattractant shows that the rate of diffusion into the spheroid is slow and thus, the chemoattractant wave engulfs the spheroid before diffusing through it. PMID:26444904

  10. Monocyte chemotactic protein-1 gene polymorphism and spontaneous bacterial peritonitis

    Institute of Scientific and Technical Information of China (English)

    Levent; Filik

    2010-01-01

    I read with great interest the article by Gbele et al published in issue 44 of World J Gastroenterol 2009.The results of their study indicate that-2518 Monocyte chemotactic protein-1(MCP-1)genotype AA is a risk factor for spontaneous bacterial peritonitis in patients with alcoholic cirrhosis.However,there are some items that need to be discussed.

  11. Migration of Chemotactic Bacteria Transverse to Flow in Response to a Benzoate Source Plume Created in a Saturated Sand-Packed Microcosm

    Science.gov (United States)

    Ford, R.; Boser, B.

    2012-12-01

    Bioremediation processes depend on contact between microbial populations and the groundwater contaminants that they biodegrade. Chemotaxis, the ability of bacteria to sense a chemical gradient and swim preferentially toward locations of higher concentration, can enhance the transport of bacteria toward contaminant sources that may not be readily accessible by advection and dispersion alone. A two-dimensional rectangular-shaped microcosm packed with quartz sand was used to quantify the effect of chemotaxis on the migration of bacteria within a saturated model aquifer system. Artificial groundwater was pumped through the microcosm at a rate of approximately 1 m/day. A plume of sodium benzoate was created by continuous injection into an upper port of the microcosm to generate a chemical gradient in the vertical direction transverse to flow. Chemotactic bacteria, Pseudomonas putida F1, or the nonchemotactic mutant, P. putida F1 CheA, were injected with a conservative tracer in a port several centimeters below the benzoate position. As the injectates traversed the one-meter length of the microcosm, samples were collected from a dozen effluent ports to determine vertical concentration distributions for the bacteria, benzoate and tracer. A moment analysis was implemented to estimate the center of mass, variance, and skewness of the concentration profiles. The transverse dispersion coefficient and the transverse dispersivity for chemotactic and nonchemotactic bacteria were also evaluated. Experiments performed with a continuous injection of bacteria showed that the center of mass for chemotactic bacteria was closer to the benzoate source on average than the nonchemotactic control (relative to the conservative tracer). These results demonstrated that chemotaxis can increase bacterial transport toward contaminants, potentially enhancing the effectiveness of in situ bioremediation. Experiments with 2 cm and 3 cm spacing between bacteria and benzoate injection locations were

  12. Maternal circulating leukocytes display early chemotactic responsiveness during late gestation

    Directory of Open Access Journals (Sweden)

    Gomez-Lopez Nardhy

    2013-01-01

    Full Text Available Abstract Background Parturition has been widely described as an immunological response; however, it is unknown how this is triggered. We hypothesized that an early event in parturition is an increased responsiveness of peripheral leukocytes to chemotactic stimuli expressed by reproductive tissues, and this precedes expression of tissue chemotactic activity, uterine activation and the systemic progesterone/estradiol shift. Methods Tissues and blood were collected from pregnant Long-Evans rats on gestational days (GD 17, 20 and 22 (term gestation. We employed a validated Boyden chamber assay, flow cytometry, quantitative real time-polymerase chain reaction, and enzyme-linked immunosorbent assays. Results We found that GD20 maternal peripheral leukocytes migrated more than those from GD17 when these were tested with GD22 uterus and cervix extracts. Leukocytes on GD20 also displayed a significant increase in chemokine (C-C motif ligand 2 (Ccl2 gene expression and this correlated with an increase in peripheral granulocyte proportions and a decrease in B cell and monocyte proportions. Tissue chemotactic activity and specific chemokines (CCL2, chemokine (C-X-C motif ligand 1/CXCL1, and CXCL10 were mostly unchanged from GD17 to GD20 and increased only on GD22. CXCL10 peaked on GD20 in cervical tissues. As expected, prostaglandin F2α receptor and oxytocin receptor gene expression increased dramatically between GD20 and 22. Progesterone concentrations fell and estradiol-17β concentrations increased in peripheral serum, cervical and uterine tissue extracts between GD20 and 22. Conclusion Maternal circulating leukocytes display early chemotactic responsiveness, which leads to their infiltration into the uterus where they may participate in the process of parturition.

  13. Chemotactic Signaling by Single-Chain Chemoreceptors.

    Directory of Open Access Journals (Sweden)

    Patricia Mowery

    Full Text Available Bacterial chemoreceptors of the methyl-accepting chemotaxis protein (MCP family operate in commingled clusters that enable cells to detect and track environmental chemical gradients with high sensitivity and precision. MCP homodimers of different detection specificities form mixed trimers of dimers that facilitate inter-receptor communication in core signaling complexes, which in turn assemble into a large signaling network. The two subunits of each homodimeric receptor molecule occupy different locations in the core complexes. One subunit participates in trimer-stabilizing interactions at the trimer axis, the other lies on the periphery of the trimer, where it can interact with two cytoplasmic proteins: CheA, a signaling autokinase, and CheW, which couples CheA activity to receptor control. As a possible tool for independently manipulating receptor subunits in these two structural environments, we constructed and characterized fused genes for the E. coli serine chemoreceptor Tsr that encoded single-chain receptor molecules in which the C-terminus of the first Tsr subunit was covalently connected to the N-terminus of the second with a polypeptide linker. We showed with soft agar assays and with a FRET-based in vivo CheA kinase assay that single-chain Tsr~Tsr molecules could promote serine sensing and chemotaxis responses. The length of the connection between the joined subunits was critical. Linkers nine residues or shorter locked the receptor in a kinase-on state, most likely by distorting the native structure of the receptor HAMP domain. Linkers 22 or more residues in length permitted near-normal Tsr function. Few single-chain molecules were found as monomer-sized proteolytic fragments in cells, indicating that covalently joined receptor subunits were responsible for mediating the signaling responses we observed. However, cysteine-directed crosslinking, spoiling by dominant-negative Tsr subunits, and rearrangement of ligand-binding site

  14. Growth and chemosensory behavior of sulfate-reducing bacteria in oxygen-sulfide gradients

    DEFF Research Database (Denmark)

    Sass, Andrea M.; Wieland, Andrea Eschemann; Kühl, Michael;

    2002-01-01

    Growth and chemotactic behavior in oxic–anoxic gradients were studied with two freshwater and four marine strains of sulfate-reducing bacteria related to the genera Desulfovibrio, Desulfomicrobium or Desulfobulbus. Cells were grown in oxygen–sulfide counter-gradients within tubes filled with agar...... chemotactically to lactate, nitrate, sulfate and thiosulfate, and even sulfide functioned as an attractant. In oxic–anoxic gradients the bacteria moved away from high oxygen concentrations and formed bands at the outer edge of the oxic zone at low oxygen concentration (... to actively change the extension and slope of the gradients by oxygen reduction with lactate or even sulfide as electron donor. Generally, the chemotactic behavior was in agreement with a defense strategy that re-establishes anoxic conditions, thus promoting anaerobic growth and, in a natural community...

  15. Mathematics of Experimentally Generated Chemoattractant Gradients.

    Science.gov (United States)

    Postma, Marten; van Haastert, Peter J M

    2016-01-01

    Many eukaryotic cells move in the direction of a chemical gradient. Several assays have been developed to measure this chemotactic response, but no complete mathematical models of the spatial and temporal gradients are available to describe the fundamental principles of chemotaxis. Here we provide analytical solutions for the gradients formed by release of chemoattractant from a point source by passive diffusion or forced flow (micropipettes) and gradients formed by laminar diffusion in a Zigmond chamber. The results show that gradients delivered with a micropipette are formed nearly instantaneously, are very steep close to the pipette, and have a steepness that is strongly dependent on the distance from the pipette. In contrast, gradients in a Zigmond chamber are formed more slowly, are nearly independent of the distance from the source, and resemble the temporal and spatial properties of the natural cAMP wave that Dictyostelium cells experience during cell aggregation. PMID:27271915

  16. Mathematics of Experimentally Generated Chemoattractant Gradients.

    Science.gov (United States)

    Postma, Marten; van Haastert, Peter J M

    2016-01-01

    Many eukaryotic cells move in the direction of a chemical gradient. Several assays have been developed to measure this chemotactic response, but no complete mathematical models of the spatial and temporal gradients are available to describe the fundamental principles of chemotaxis. Here we provide analytical solutions for the gradients formed by release of chemoattractant from a point source by passive diffusion or forced flow (micropipettes) and gradients formed by laminar diffusion in a Zigmond chamber. The results show that gradients delivered with a micropipette are formed nearly instantaneously, are very steep close to the pipette, and have a steepness that is strongly dependent on the distance from the pipette. In contrast, gradients in a Zigmond chamber are formed more slowly, are nearly independent of the distance from the source, and resemble the temporal and spatial properties of the natural cAMP wave that Dictyostelium cells experience during cell aggregation.

  17. Quantitative modeling of Escherichia coli chemotactic motion in environments varying in space and time.

    Directory of Open Access Journals (Sweden)

    Lili Jiang

    2010-04-01

    Full Text Available Escherichia coli chemotactic motion in spatiotemporally varying environments is studied by using a computational model based on a coarse-grained description of the intracellular signaling pathway dynamics. We find that the cell's chemotaxis drift velocity v(d is a constant in an exponential attractant concentration gradient [L] proportional, variantexp(Gx. v(d depends linearly on the exponential gradient G before it saturates when G is larger than a critical value G(C. We find that G(C is determined by the intracellular adaptation rate k(R with a simple scaling law: G(C infinity k(1/2(R. The linear dependence of v(d on G = d(ln[L]/dx directly demonstrates E. coli's ability in sensing the derivative of the logarithmic attractant concentration. The existence of the limiting gradient G(C and its scaling with k(R are explained by the underlying intracellular adaptation dynamics and the flagellar motor response characteristics. For individual cells, we find that the overall average run length in an exponential gradient is longer than that in a homogeneous environment, which is caused by the constant kinase activity shift (decrease. The forward runs (up the gradient are longer than the backward runs, as expected; and depending on the exact gradient, the (shorter backward runs can be comparable to runs in a spatially homogeneous environment, consistent with previous experiments. In (spatial ligand gradients that also vary in time, the chemotaxis motion is damped as the frequency omega of the time-varying spatial gradient becomes faster than a critical value omega(c, which is controlled by the cell's chemotaxis adaptation rate k(R. Finally, our model, with no adjustable parameters, agrees quantitatively with the classical capillary assay experiments where the attractant concentration changes both in space and time. Our model can thus be used to study E. coli chemotaxis behavior in arbitrary spatiotemporally varying environments. Further experiments are

  18. Marangoni-driven chemotaxis, chemotactic collapse, and the Keller-Segel equation

    Science.gov (United States)

    Shelley, Michael; Masoud, Hassan

    2013-11-01

    Almost by definition, chemotaxis involves the biased motion of motile particles along gradients of a chemical concentration field. Perhaps the most famous model for collective chemotaxis in mathematical biology is the Keller-Segel model, conceived to describe collective aggregation of slime mold colonies in response to an intrinsically produced, and diffusing, chemo-attractant. Heavily studied, particularly in 2D where the system is ``super-critical'', it has been proved that the KS model can develop finite-time singularities - so-called chemotactic collapse - of delta-function type. Here, we study the collective dynamics of immotile particles bound to a 2D interface above a 3D fluid. These particles are chemically active and produce a diffusing field that creates surface-tension gradients along the surface. The resultant Marangoni stresses create flows that carry the particles, possibly concentrating them. Remarkably, we show that this system involving 3D diffusion and fluid dynamics, exactly yields the 2D Keller-Segel model for the surface-flow of active particles. We discuss the consequences of collapse on the 3D fluid dynamics, and generalizations of the fluid-dynamical model.

  19. Jeans type instability for a chemotactic model of cellular aggregation

    CERN Document Server

    Chavanis, Pierre-Henri

    2008-01-01

    We consider an inertial model of chemotactic aggregation generalizing the Keller-Segel model and we study the linear dynamical stability of an infinite and homogeneous distribution of cells (bacteria, amoebae, endothelial cells,...) when inertial effects are accounted for. These inertial terms model cells directional persistance. We determine the condition of instability and the growth rate of the perturbation as a function of the cell density and the wavelength of the perturbation. We discuss the differences between overdamped (Keller-Segel) and inertial models. Finally, we show the analogy between the instability criterion for biological populations and the Jeans instability criterion in astrophysics.

  20. Diversity of chemotactic heterotrophic bacteria associated with arctic cyanobacteria.

    Science.gov (United States)

    Prasad, Sathish; Pratibha, Mambatta Shankaranarayanan; Manasa, Poorna; Buddhi, Sailaja; Begum, Zareena; Shivaji, Sisinthy

    2013-01-01

    The abundance and diversity of chemotactic heterotrophic bacteria associated with Arctic cyanobacteria was determined. The viable numbers ranged between 10(4) and 10(6) cell g(-1) cyanobacterial biomass. A total of 112 morphotypes, representing 22 phylotypes based on their 16S rRNA sequence similarity were isolated from the samples. All the phylotypes were Gram-negative with affiliation to the proteobacterial and bacteroidetes divisions. Among the 22 phylotypes, 14 were chemotactic to glucose. Majority of the phylotypes were psychrotolerant showing growth up to 30 °C. Representatives of Alphaproteobacteria, the genus Flavobacterium and the gammaproteobacterial Alcanivorax sp, were psychrophilic with growth at or below 18 °C. A significant percentage of phylotypes were pigmented (~68 %), rich in unsaturated membrane fatty acids and tolerated pH values and NaCl concentrations between 5.0-8.0 and 0.15-1.0 M, respectively. The percentages of phylotypes producing extracellular cold-active enzymes at 4 °C were amylase (18.18 %), lipase and urease (45.45 %), caseinase (59.09 %) and gelatinase (31.8 %). PMID:23053490

  1. Corneal organ cultures in tyrosinemia release chemotactic factors.

    Science.gov (United States)

    Lohr, K M; Hyndiuk, R A; Hatchell, D L; Kurth, C E

    1985-05-01

    Corneal inflammation with subsequent scarring and blindness occurs in the inherited human metabolic disease tyrosinemia type II, yet putative inflammatory mediators in this disorder and in the avascular cornea in general are poorly defined. In a Tyr-fed rat model of tyrosinemia type II, intracellular crystals, presumably Tyr, are hypothesized to be responsible for the increased lysosomal activity observed in corneal epithelial lesions. Because polymorphonuclear leukocytes (PMNs) are seen only at the site of these lesions, we used this model to study humoral mediators released from Tyr-fed rat corneal organ cultures. Only Tyr-fed rats developed stromal edema and linear granular opacities in gray edematous corneal epithelium, compatible with a noninfectious keratitis. Electron micrographs confirmed epithelial edema and showed focal epithelial necrosis with PMN invasion of the stroma. Only Tyr-fed rat corneal culture supernatants contained chemotactic activity that was heat labile and moderately trypsin sensitive. Four peaks with varying amounts of chemotactic activity were found on Sephadex G-75 chromatography. Although the identity of these peaks of activity has not yet been established, we suggest that they may be responsible for the PMN infiltration observed in this model of corneal inflammation.

  2. DETECTION OF A NEUTROPHIL CHEMOTACTIC FACTOR IN JAPANESE ENCEPHALITIS PATIENTS

    Directory of Open Access Journals (Sweden)

    Aditi Singh

    2012-12-01

    Full Text Available Japanese encephalitis (JE one of the most common cause of acute encephalitis in tropical regions, has generated much public anxiety in India. An early influx of macrophages followed by neutrophils at the site of injury in different organs in humans and mice has previously been reported. It correlated with production of a neutrophil chemotactic protein derived from macrophages. In the present study out of a total of 324 acute encephalitic patients, admitted in Gandhi memorial and associated hospitals, Lucknow, 121 patients with one or more indicators of JE virus infection were included. Significant pleocytosis (mean TLC value of 126+52 cells / mm3 in CSF and leucocytosis (>11,000 cells/mm3 in peripheral blood was observed at the time of admission. The leucocytosis increased significantly during second week in 67% of patients. The peripheral blood mononuclear cells culture done on alternate days was tested for chemotactic activity (hMDF, which was observed to be highest in second week of illness. The direct detection of hMDF in circulation by dot blot was positive in 92% of acute serum samples, with negligible (12.5% reactivity for convalescent sera. A correlation between the hMDF levels and severity of illness has also been observed.

  3. TNF-alpha associated with extracellular matrix fibronectin provides a stop signal for chemotactically migrating T cells.

    Science.gov (United States)

    Franitza, S; Hershkoviz, R; Kam, N; Lichtenstein, N; Vaday, G G; Alon, R; Lider, O

    2000-09-01

    The migration of T cells into extravascular sites of inflammation is regulated by information derived from the molecular structure of the invaded tissue and from chemokine and cytokine gradients in the context of the extracellular matrix (ECM). Although recent studies have highlighted the role of particular chemoattractants in leukocyte migration, to date little is known about how specific combinations of contextual signals control the migration of leukocytes and their localization at sites of inflammation. Here we studied the interplay between a pleiotropic cytokine, TNF-alpha, and two prototypic chemoattractants, RANTES and stromal cell-derived factor-1alpha (SDF-1alpha), on human CD45RO+ T cells migrating within an ECM-like context. For this purpose, we used a newly constructed three-dimensional gel system designed to follow, in real time, the migration of individual leukocytes along chemotactic gradients in vitro. We found that TNF-alpha, which binds the ECM protein fibronectin and lacks adhesion- and migration-promoting effects of its own, can act as a proadhesive cytokine on T cells exposed to RANTES and SDF-1alpha. Furthermore, fibronectin-complexed TNF-alpha provided anchorage signals to the T cells as they moved directionally along chemoattractive gradients. This effect of TNF-alpha required an intact TNF-alpha receptor II subtype on the migrating T cells. The anchoring effect of TNF-alpha appears to be specific; IL-2, an integrin-activating proadhesive cytokine, does not transmit stoppage signals to T cell migration induced by RANTES. Thus, TNF-alpha present in the ECM at sites of inflammation may function to anchor T cells recruited to these sites by chemotactic signals. PMID:10946305

  4. Radioassay of granulocyte chemotaxis. Studies of human granulocytes and chemotactic factors. [/sup 51/Cr tracer technique

    Energy Technology Data Exchange (ETDEWEB)

    Gallin, J.I.

    1974-01-01

    The above studies demonstrate that the /sup 51/Cr radiolabel chemotactic assay is a relatively simple and objective means for studying leukocyte chemotaxis in both normal and pathological conditions. Application of this method to studies of normal human chemotaxis revealed a relatively narrow range of normal and little day-to-day variability. Analysis of this variability revealed that there is more variability among the response of different granulocytes to a constant chemotactic stimulus than among the chemotactic activity of different sera to a single cell source. Utilizing the /sup 51/Cr radioassay, the abnormal granulocyte chemotactic behavior reported in Chediak-Higashi syndrome and a patient with recurrent pyogenic infections and mucocutaneous candidiasis has been confirmed. The /sup 51/Cr chemotactic assay has also been used to assess the generation of chemotactic activity from human serum and plasma. The in vitro generation of two distinct chemotactic factors were examined; the complement product (C5a) and kallikrein, an enzyme of the kinin-generating pathway. Kinetic analysis of complement-related chemotactic factor formation, utilizing immune complexes or endotoxin to activate normal sera in the presence or absence of EGTA as well as kinetic analysis of activation of C2-deficient human serum, provided an easy means of distinguishing the classical (antibody-mediated) complement pathway from the alternate pathway. Such kinetic analysis is necessary to detect clinically important abnormalities since, after 60 min of generation time, normal chemotactic activity may be present despite complete absence or inhibition of one complement pathway. The chemotactic factor generated by either pathway of complement activation appears to be predominately attributable to C5a.

  5. A Worldwide Competition to Compare the Speed and Chemotactic Accuracy of Neutrophil-Like Cells

    Science.gov (United States)

    Wong, Elisabeth; Hamza, Bashar; Bae, Albert; Martel, Joseph; Kataria, Rama; Keizer-Gunnink, Ineke; Kortholt, Arjan; Van Haastert, Peter J. M.; Charras, Guillaume; Janetopoulos, Christopher; Irimia, Daniel

    2016-01-01

    Chemotaxis is the ability to migrate towards the source of chemical gradients. It underlies the ability of neutrophils and other immune cells to hone in on their targets and defend against invading pathogens. Given the importance of neutrophil migration to health and disease, it is crucial to understand the basic mechanisms controlling chemotaxis so that strategies can be developed to modulate cell migration in clinical settings. Because of the complexity of human genetics, Dictyostelium and HL60 cells have long served as models system for studying chemotaxis. Since many of our current insights into chemotaxis have been gained from these two model systems, we decided to compare them side by side in a set of winner-take-all races, the Dicty World Races. These worldwide competitions challenge researchers to genetically engineer and pharmacologically enhance the model systems to compete in microfluidic racecourses. These races bring together technological innovations in genetic engineering and precision measurement of cell motility. Fourteen teams participated in the inaugural Dicty World Race 2014 and contributed cell lines, which they tuned for enhanced speed and chemotactic accuracy. The race enabled large-scale analyses of chemotaxis in complex environments and revealed an intriguing balance of speed and accuracy of the model cell lines. The successes of the first race validated the concept of using fun-spirited competition to gain insights into the complex mechanisms controlling chemotaxis, while the challenges of the first race will guide further technological development and planning of future events. PMID:27332963

  6. A Worldwide Competition to Compare the Speed and Chemotactic Accuracy of Neutrophil-Like Cells.

    Science.gov (United States)

    Skoge, Monica; Wong, Elisabeth; Hamza, Bashar; Bae, Albert; Martel, Joseph; Kataria, Rama; Keizer-Gunnink, Ineke; Kortholt, Arjan; Van Haastert, Peter J M; Charras, Guillaume; Janetopoulos, Christopher; Irimia, Daniel

    2016-01-01

    Chemotaxis is the ability to migrate towards the source of chemical gradients. It underlies the ability of neutrophils and other immune cells to hone in on their targets and defend against invading pathogens. Given the importance of neutrophil migration to health and disease, it is crucial to understand the basic mechanisms controlling chemotaxis so that strategies can be developed to modulate cell migration in clinical settings. Because of the complexity of human genetics, Dictyostelium and HL60 cells have long served as models system for studying chemotaxis. Since many of our current insights into chemotaxis have been gained from these two model systems, we decided to compare them side by side in a set of winner-take-all races, the Dicty World Races. These worldwide competitions challenge researchers to genetically engineer and pharmacologically enhance the model systems to compete in microfluidic racecourses. These races bring together technological innovations in genetic engineering and precision measurement of cell motility. Fourteen teams participated in the inaugural Dicty World Race 2014 and contributed cell lines, which they tuned for enhanced speed and chemotactic accuracy. The race enabled large-scale analyses of chemotaxis in complex environments and revealed an intriguing balance of speed and accuracy of the model cell lines. The successes of the first race validated the concept of using fun-spirited competition to gain insights into the complex mechanisms controlling chemotaxis, while the challenges of the first race will guide further technological development and planning of future events. PMID:27332963

  7. Enhancement of Chemotactic Cell Aggregation by Haptotactic Cell-To-Cell Interaction.

    Directory of Open Access Journals (Sweden)

    Tae-Goo Kwon

    Full Text Available The crawling of biological cell is a complex phenomenon involving various biochemical and mechanical processes. Some of these processes are intrinsic to individual cells, while others pertain to cell-to-cell interactions and to their responses to extrinsically imposed cues. Here, we report an interesting aggregation dynamics of mathematical model cells, when they perform chemotaxis in response to an externally imposed global chemical gradient while they influence each other through a haptotaxis-mediated social interaction, which confers intriguing trail patterns. In the absence of the cell-to-cell interaction, the equilibrium population density profile fits well to that of a simple Keller-Segal population dynamic model, in which a chemotactic current density [Formula: see text] competes with a normal diffusive current density [Formula: see text], where p and ρ refer to the concentration of chemoattractant and population density, respectively. We find that the cell-to-cell interaction confers a far more compact aggregation resulting in a much higher peak equilibrium cell density. The mathematical model system is applicable to many biological systems such as swarming microglia and neutrophils or accumulating ants towards a localized food source.

  8. Wave Patterns in Cell Membrane and Actin Cortex Uncoupled from Chemotactic Signals.

    Science.gov (United States)

    Gerisch, Günther; Ecke, Mary

    2016-01-01

    When cells of Dictyostelium discoideum orientate in a gradient of chemoattractant, they are polarized into a protruding front pointing toward the source of attractant, and into a retracting tail. Under the control of chemotactic signal inputs, Ras is activated and PIP3 is synthesized at the front, while the PIP3-degrading phosphatase PTEN decorates the tail region. As a result of signal transduction, actin filaments assemble at the front into dendritic structures associated with the Arp2/3 complex, in contrast to the tail region where a loose actin meshwork is associated with myosin-II and cortexillin, an antiparallel actin-bundling protein. In axenically growing strains of D. discoideum, wave patterns built by the same components evolve in the absence of any external signal input. Since these autonomously generated patterns are constrained to the plane of the substrate-attached cell surface, they are optimally suited to the optical analysis of state transitions between front-like and tail-like states of the membrane and the actin cortex. Here, we describe imaging techniques using fluorescent proteins to probe for the state of the membrane, the reorganization of the actin network, and the dynamics of wave patterns.

  9. Phenomenological understanding of aggregation and dispersion of chemotactic cells

    CERN Document Server

    Iwasa, Masatomo

    2011-01-01

    We present a simple model that describes the motion of a single chemotactic cell exposed to a traveling wave of the chemoattractant. The model incorporates two types of responses to stimulation by the chemoattractant, i.e., change in polarity and change in motility of the cell. The periodic change in motility is assumed to be induced by the periodic stimulation by the chemoattractant on the basis of previous observations. Consequently, net migration of the cell occurs in a particular direction with respect to wave propagation, which explains the migration of Dictyostelium cells in aggregation processes. The difference between two time delays from the stimulation to the two responses and the wave frequency determined by the frequency of the secretion of the chemoattractant are important parameters that determine the direction of migration and the effective interaction between cells in a population. This result explains the dispersed state of a population of vegetative cells and cells in preaggregation without ...

  10. Crosstalk between medulloblastoma cells and endothelium triggers a strong chemotactic signal recruiting T lymphocytes to the tumor microenvironment.

    Directory of Open Access Journals (Sweden)

    Vita S Salsman

    Full Text Available Cancer cells can live and grow if they succeed in creating a favorable niche that often includes elements from the immune system. While T lymphocytes play an important role in the host response to tumor growth, the mechanism of their trafficking to the tumor remains poorly understood. We show here that T lymphocytes consistently infiltrate the primary brain cancer, medulloblastoma. We demonstrate, both in vitro and in vivo, that these T lymphocytes are attracted to tumor deposits only after the tumor cells have interacted with tumor vascular endothelium. Macrophage Migration Inhibitory Factor (MIF" is the key chemokine molecule secreted by tumor cells which induces the tumor vascular endothelial cells to secrete the potent T lymphocyte attractant "Regulated upon Activation, Normal T-cell Expressed, and Secreted (RANTES." This in turn creates a chemotactic gradient for RANTES-receptor bearing T lymphocytes. Manipulation of this pathway could have important therapeutic implications.

  11. Thrombin cleavage of osteopontin disrupts a pro-chemotactic sequence for dendritic cells, which is compensated by the release of its pro-chemotactic C-terminal fragment.

    Science.gov (United States)

    Shao, Zhifei; Morser, John; Leung, Lawrence L K

    2014-09-26

    Thrombin cleavage alters the function of osteopontin (OPN) by exposing an integrin binding site and releasing a chemotactic C-terminal fragment. Here, we examined thrombin cleavage of OPN in the context of dendritic cell (DC) migration to define its functional domains. Full-length OPN (OPN-FL), thrombin-cleaved N-terminal fragment (OPN-R), thrombin- and carboxypeptidase B2-double-cleaved N-terminal fragment (OPN-L), and C-terminal fragment (OPN-CTF) did not have intrinsic chemotactic activity, but all potentiated CCL21-induced DC migration. OPN-FL possessed the highest potency, whereas OPNRAA-FL had substantially less activity, indicating the importance of RGD. We identified a conserved (168)RSKSKKFRR(176) sequence on OPN-FL that spans the thrombin cleavage site, and it demonstrated potent pro-chemotactic effects on CCL21-induced DC migration. OPN-FLR168A had reduced activity, and the double mutant OPNRAA-FLR168A had even lower activity, indicating that these functional domains accounted for most of the pro-chemotactic activity of OPN-FL. OPN-CTF also possessed substantial pro-chemotactic activity, which was fully expressed upon thrombin cleavage and its release from the intact protein, because OPN-CTF was substantially more active than OPNRAA-FLR168A containing the OPN-CTF sequence within the intact protein. OPN-R and OPN-L possessed similar potency, indicating that the newly exposed C-terminal SVVYGLR sequence in OPN-R was not involved in the pro-chemotactic effect. OPN-FL and OPN-CTF did not directly bind to the CD44 standard form or CD44v6. In conclusion, thrombin cleavage of OPN disrupts a pro-chemotactic sequence in intact OPN, and its loss of pro-chemotactic activity is compensated by the release of OPN-CTF, which assumes a new conformation and possesses substantial activity in enhancing chemokine-induced migration of DCs. PMID:25112870

  12. Chemotactic Activity on Human Neutrophils to Streptococcus mutans

    Directory of Open Access Journals (Sweden)

    Tetiana Haniastuti

    2013-07-01

    Full Text Available Objective: The aim of this study was to evaluate chemotactic activity o neutrophil to S. mutans. Chemotaxis assay was performed in blind well chambers. Materials and Methods: Hanks balanced salt solution (HBSS containing 106 S. mutans,  108 S. mutans, 10-8 M fMLP, or HBSS alone were placed in the lower wells of the chamber and covered with polycorbonate membrane filter. Neutrophils suspension (2x105 cells was then placed in the upper compartment. After incubation for 60 mins at 37ºC in a humidified atmosphere with 5% CO2, the filters were removed and stained with Giemsa. Result: ANOVA revealed statistically significant differences among groups (p<0.05, indicating that S. mutans induced neutrophils chemotaxis. The number of neutrophils migration in response to 108 S. mutans and 106 S. mutans were signifiantly greater compared to fMLP (p<0.05. Conclusion: S. mutans may activate human neutrophils, resulting in the chemotaxis of the neutrophils.DOI: 10.14693/jdi.v16i2.99

  13. Sonic hedgehog is a chemotactic neural crest cell guide that is perturbed by ethanol exposure.

    Science.gov (United States)

    Tolosa, Ezequiel J; Fernández-Zapico, Martín E; Battiato, Natalia L; Rovasio, Roberto A

    2016-01-01

    Our aim was to understand the involvement of Sonic hedgehog (Shh) morphogen in the oriented distribution of neural crest cells (NCCs) toward the optic vesicle and to look for potential disorders of this guiding mechanism after ethanol exposure. In vitro directional analysis showed the chemotactic response of NCCs up Shh gradients and to notochord co-cultures (Shh source) or to their conditioned medium, a response inhibited by anti-Shh antibody, receptor inhibitor cyclopamine and anti-Smo morpholino (MO). Expression of the Ptch-Smo receptor complex on in vitro NCCs was also shown. In whole embryos, the expression of Shh mRNA and protein was seen in the ocular region, and of Ptch, Smo and Gli/Sufu system on cephalic NCCs. Anti-Smo MO or Ptch-mutated plasmid (Ptch1(Δloop2)) impaired cephalic NCC migration/distribution, with fewer cells invading the optic region and with higher cell density at the homolateral mesencephalic level. Beads embedded with cyclopamine (Smo-blocking) or Shh (ectopic signal) supported the role of Shh as an in vivo guide molecule for cephalic NCCs. Ethanol exposure perturbed in vitro and in vivo NCC migration. Early stage embryos treated with ethanol, in a model reproducing Fetal Alcohol Syndrome, showed later disruptions of craniofacial development associated with abnormal in situ expression of Shh morphogen. The results show the Shh/Ptch/Smo-dependent migration of NCCs toward the optic vesicle, with the support of specific inactivation with genetic and pharmacological tools. They also help to understand mechanisms of accurate distribution of embryonic cells and of their perturbation by a commonly consumed teratogen, and demonstrate, in addition to its other known developmental functions, a new biological activity of cellular guidance for Shh. PMID:26979762

  14. Enhanced Retention of Chemotactic Bacteria in a Pore Network with Residual NAPL Contamination.

    Science.gov (United States)

    Wang, Xiaopu; Lanning, Larry M; Ford, Roseanne M

    2016-01-01

    Nonaqueous-phase liquid (NAPL) contaminants are difficult to eliminate from natural aquifers due, in part, to the heterogeneous structure of the soil. Chemotaxis enhances the mixing of bacteria with contaminant sources in low-permeability regions, which may not be readily accessible by advection and dispersion alone. A microfluidic device was designed to mimic heterogeneous features of a contaminated groundwater aquifer. NAPL droplets (toluene) were trapped within a fine pore network, and bacteria were injected through a highly conductive adjacent macrochannel. Chemotactic bacteria (Pseudomonas putida F1) exhibited greater accumulation near the pore network at 0.5 m/day than both the nonchemotactic control and the chemotactic bacteria at a higher groundwater velocity of 5 m/day. Chemotactic bacteria accumulated in the vicinity of NAPL droplets, and the accumulation was 15% greater than a nonchemotactic mutant. Indirect evidence showed that chemotactic bacteria were retained within the contaminated low-permeability region longer than nonchemotactic bacteria at 0.25 m/day. This retention was diminished at 5 m/day. Numerical solutions of the bacterial-transport equations were consistent with the experimental results. Because toluene is degraded by P. putida F1, the accumulation of chemotactic bacteria around NAPL sources is expected to increase contaminant consumption and improve the efficiency of bioremediation.

  15. Collective Chemotactic Dynamics in the Presence of Self-Generated Fluid Flows

    CERN Document Server

    Lushi, Enkeleida; Shelley, Michael J

    2012-01-01

    In micro-swimmer suspensions locomotion necessarily generates fluid motion, and it is known that such flows can lead to collective behavior from unbiased swimming. We examine the complementary problem of how chemotaxis is affected by self-generated flows. A kinetic theory coupling run-and-tumble chemotaxis to the flows of collective swimming shows separate branches of chemotactic and hydrodynamic instabilities for isotropic suspensions, the first driving aggregation, the second producing increased orientational order in suspensions of "pushers" and maximal disorder in suspensions of "pullers". Nonlinear simulations show that hydrodynamic interactions can limit and modify chemotactically-driven aggregation dynamics. In puller suspensions the dynamics form aggregates that are mutually-repelling due to the non-trivial flows. In pusher suspensions chemotactic aggregation can lead to destabilizing flows that fragment the regions of aggregation.

  16. Controlling Interneuron Activity in Caenorhabditis Elegans to Evoke Chemotactic Behaviour

    OpenAIRE

    Kocabas, Askin; Shen, Ching-Han; Guo, Zengcai V.; Ramanathan, Sharad

    2012-01-01

    Animals locate and track chemoattractive gradients in the environment to find food. With its small nervous system, Caenorhabditis elegans is a good model system in which to understand how the dynamics of neural activity control this search behaviour. Extensive work on the nematode has identified the neurons that are necessary for the different locomotory behaviours underlying chemotaxis through the use of laser ablation, activity recording in immobilized animals and the study of mutants. Howe...

  17. Draft Genome Sequence of Halomonas sp. KHS3, a Polyaromatic Hydrocarbon-Chemotactic Strain

    OpenAIRE

    Gasperotti, Ana Florencia; Studdert, Claudia Alicia; Revale, Santiago; Herrera Seitz, María Karina

    2015-01-01

    The draft genome sequence of Halomonas sp. KHS3, isolated from seawater from Mar del Plata harbor, is reported. This strain is able to grow using aromatic compounds as a carbon source and shows strong chemotactic response toward these substrates. Genes involved in motility, chemotaxis, and degradation of aromatic hydrocarbons were identified.

  18. Monocyte chemotactic protein-1 expression in coronary atherosclerosis plaque of sudden coronary death patients

    Institute of Scientific and Technical Information of China (English)

    冯相平

    2006-01-01

    Objective To investigate the expression of monocyte chemotactic protein 1 (MCP-1) in coronary atherosclerosis plaque of sudden coronary death (SCD) patients and the relationship between MCP-1 expression and SCD. Methods Autopsy heart samples (n=90) collected during 2001 - 2003 were divided to SCD group (n=

  19. A new SPH scheme to model transport of chemotactic bacteria in porous media at the continuum scale

    Science.gov (United States)

    Avesani, Diego; Bellin, Alberto; Dumbser, Michael; Chiogna, Gabriele

    2015-04-01

    As recently shown chemotaxis, i.e. the movement of microorganisms toward or away from the concentration gradient of a chemical species, could have a fundamental role in the transport of bacteria through saturated porous media. Chemotactic bacteria could enhance bioremediation by directing their own motions to residual contaminants in less conductive zones of aquifers. The aim of the present work is to develop a proper numerical scheme to define and to quantify the magnitude and the role of chemotaxis in the complex groundwater system framework. We present a new class of meshless Lagrangian particle methods based on the Smooth Particle Hydrodinamics (SPH) formulation of Vila & Ben Moussa, combined with a new Weighted Essentially Non-Oscillatory (WENO) reconstruction technique on moving point clouds in multiple space dimensions. The purpose of this new scheme is to fully exploit the advantages of SPH among traditional meshbased and meshfree schemes and to overcome its problems for modeling chemotaxis in porous media. We test the new scheme against analytical reference solutions and we show, under the assumption of complete mixing at the Darcy scale, that chemotaxis may significantly affect the quantification of field-scale bacterial distribution, therefore influencing reactive mixing and degradation of contaminants.

  20. Gradient networks

    Science.gov (United States)

    Toroczkai, Zoltán; Kozma, Balázs; Bassler, Kevin E.; Hengartner, N. W.; Korniss, G.

    2008-04-01

    Gradient networks are defined (Toroczkai and Bassler 2004 Nature 428 716) as directed graphs formed by local gradients of a scalar field distributed on the nodes of a substrate network G. We present the derivation for some of the general properties of gradient graphs and give an exact expression for the in-degree distribution R(l) of the gradient network when the substrate is a binomial (Erd{\\;\\kern -0.10em \\raise -0.35ex \\{{^{^{\\prime\\prime}}}}\\kern -0.57em \\o} s-Rényi) random graph, G_{N,p} , and the scalars are independent identically distributed (i.i.d.) random variables. We show that in the limit N \\to \\infty, p \\to 0, z = pN = \\mbox{const} \\gg 1, R(l)\\propto l^{-1} for l Bassler (2004 Nature 428 716).

  1. RANTES and chemotactic activity in synovial fluids from patients with rheumatoid arthritis and osteoarthritis.

    Science.gov (United States)

    Stanczyk, Joanna; Kowalski, Marek L; Grzegorczyk, Janina; Szkudlinska, Barbara; Jarzebska, Marzanna; Marciniak, Marek; Synder, Marek

    2005-12-14

    A massive accumulation of inflammatory cells in synovial tissues is a major pathological feature of rheumatoid arthritis (RA). Neutrophiles dominate synovial fluid while rheumatoid synovium is infiltrated with mononuclear cells. Mechanisms regulating influx of particular subpopulations of leukocytes into articular cavity and synovium compartment are not completely defined. An increasing amount of data supports a crucial role of a C-C chemokine RANTES in the RA pathogenesis. Our objective is to evaluate chemotactic activity for neutrophils (NCA), lymphocytes (LCA), and monocytes (MoCA) in SFs obtained from patients with RA and osteoarthritis (OA). We also aimed to characterise the relation between chemotactic activity, RANTES, and percentage distribution of leukocytes in SF. SFs from 11 patients with RA and 6 with OA were included in the study. Modified microchamber Boyden method was employed to assess chemotactic activity. Cytological and biochemical analysis of SF was performed. RANTES was measured with ELISA. Rheumatoid SFs were rich in cells with predominance of neutrophiles while osteoarthritic fluids were lymphocytic. RA SFs were also characterised by increased lactoferrin level. Both NCA and LCA were higher in SF from patients with RA (62 +/- 12 and 24 +/- 6 cells/HPF, resp) as compared to patients with OA (23 +/- 6; P < .05 and 6 +/- 2 cells/HPF; P < 0.05). The chemoattractive effect of RA SF was more pronounced on neutrophiles than on lymphocytes. RA SF expressed high RANTES levels (145+/- 36 pg/mL), while OA SF was characterised by only trace amount of this chemokine (2 +/- 1 pg/mL). We found positive correlation of RANTES with chemotactic activity for mononuclear cells (LCA + MoCA; R = 0.61; P < .05). Surprisingly, RANTES correlated also positively with neutrophiles number (R = 0.77; P < 0.001). Rheumatoid SF possesses strong chemotactic potency for leukocytes. RANTES is overexpressed in RA SF and is a potential mediator influencing intensity and

  2. Dependence of bacterial chemotaxis on gradient shape and adaptation rate.

    Directory of Open Access Journals (Sweden)

    Nikita Vladimirov

    2008-12-01

    Full Text Available Simulation of cellular behavior on multiple scales requires models that are sufficiently detailed to capture central intracellular processes but at the same time enable the simulation of entire cell populations in a computationally cheap way. In this paper we present RapidCell, a hybrid model of chemotactic Escherichia coli that combines the Monod-Wyman-Changeux signal processing by mixed chemoreceptor clusters, the adaptation dynamics described by ordinary differential equations, and a detailed model of cell tumbling. Our model dramatically reduces computational costs and allows the highly efficient simulation of E. coli chemotaxis. We use the model to investigate chemotaxis in different gradients, and suggest a new, constant-activity type of gradient to systematically study chemotactic behavior of virtual bacteria. Using the unique properties of this gradient, we show that optimal chemotaxis is observed in a narrow range of CheA kinase activity, where concentration of the response regulator CheY-P falls into the operating range of flagellar motors. Our simulations also confirm that the CheB phosphorylation feedback improves chemotactic efficiency by shifting the average CheY-P concentration to fit the motor operating range. Our results suggest that in liquid media the variability in adaptation times among cells may be evolutionary favorable to ensure coexistence of subpopulations that will be optimally tactic in different gradients. However, in a porous medium (agar such variability appears to be less important, because agar structure poses mainly negative selection against subpopulations with low levels of adaptation enzymes. RapidCell is available from the authors upon request.

  3. An enzyme immunoassay for detection of Japanese encephalitis virus-induced chemotactic cytokine

    Indian Academy of Sciences (India)

    Aditi Singh; Rajesh Kulshreshtha; Asha Mathur

    2000-03-01

    Japanese encephalitis virus (JEV) induces human peripheral blood monocytes to secrete a chemotactic cytokine [human macrophage-derived factor (hMDF)] which causes chemotaxis of neutrophils. The only known assay for hMDF cannot quantify its level in samples, so an enzyme immunoassay has been standardized for detection of hMDF and hMDF-specific antibodies in test samples. The reported enzyme linked immunosorbent assay (ELISA) was found to be sensitive (89%), specific (91%), accurate (92·2%) and reproducible and was able to detect a minimum concentration of 23 ng hMDF/ml in test samples. The chemotactic factor could be detected in JEV inoculated mouse sera and JEV infected culture fluids. Significant finding of the test was the detection of hMDF in sera of human cases of JE.

  4. Fucose-binding Lotus tetragonolobus lectin binds to human polymorphonuclear leukocytes and induces a chemotactic response.

    Science.gov (United States)

    VanEpps, D E; Tung, K S

    1977-09-01

    Fucose-binding L. tetragonolobus lectin to the surface of human polymorphonuclear leukocytes (PMN) and induces a chemotactic response. Both surface binding and chemotaxis are inhibited by free fucose but not by fructose, mannose, or galactose. The lectin-binding sites on PMN are unrelated to the A, B, or O blood group antigen. Utilization of this lectin should be a useful tool in isolating PMN membrane components and in analyzing the mechanism of neutrophil chemotaxis. PMID:330752

  5. A chemotactic model for interaction of antagonistic microflora colonies: front asymptotics and numerical simulations.

    OpenAIRE

    Málaga Iguiñiz, Carlos; Minzoni, Antonmaria Alessio; Plaza, Ramón Gabriel; Simeoni, Chiara

    2013-01-01

    International audience This paper studies a two-dimensional chemotactic model for two species in which one of them produces a chemo-repellent for the other. It is shown asymptotically and numerically how the chemical inhibits the invasion of a moving front for the second species and how stable steady states, which depend on the chemical concentration, can be reached. The results qualitatively explain experimental observations by Swain and Ray (Microbiol. Res. 164(2), 2009), where colonies ...

  6. Chemotactic model for interaction of antagonistic microflora colonies and numerical simulations

    CERN Document Server

    Malaga, Carlos; Plaza, Ramon G; Simeoni, Chiara

    2011-01-01

    This paper studies a two-dimensional chemotactic model for two species in which one of them produces a chemo-repellent for the other. Under these circumstances, the chemical inhibits the invasion of a moving front for the second species. It is shown asymptotically and numerically how stable steady states, which depend on the chemical concentration, can be reached. The results qualitatively explain experimental observations by Swain and Ray, where colonies of bacteria produce metabolite agents which prevent the invasion of fungi.

  7. Polymorphonuclear neutrophil granulocyte chemotactic hyperresponsiveness in a case of canine acromegaly.

    Science.gov (United States)

    Jensen, A L; Thomsen, M K; Aaes, H; Andreasen, M; Søndergaard, J

    1993-08-01

    Growth hormone (GH) has recently been shown to affect polymorphonuclear neutrophil granulocyte (PMN) function and to be secreted by mononuclear cells, indicating that the hormone may be active in an immunophysiologic network, acting as an endo- or paracrine priming agent. The purpose of the present study was to evaluate the chemotactic responsiveness of canine peripheral PMN in a dog with acromegaly, caused by spontaneous, progesterone-induced hypersecretion of GH and, secondary to this, a seven-fold increase in insulin-like growth factor I (IGF-I). The chemotactic responsiveness towards zymosan-activated serum (ZAS) and leukotriene B4 (LTB4) was evaluated at a time when the dog suffered from acromegaly and again 57 days after corrective surgery (ovariohysterectomy). The experiments showed that PMN from the patient exhibited enhanced chemotactic migration that appeared to be associated with the hypersomatotropic condition as judged from the reversibility of the phenomenon. The glucose intolerance and elevated serum alkaline phosphatase that were observed in the acromegalic dog were also shown to be reversible following surgery.

  8. On a competitive system under chemotactic effects with non-local terms

    International Nuclear Information System (INIS)

    In this paper, we study a system of partial differential equations describing the evolution of a population under chemotactic effects with non-local reaction terms. We consider an external application of chemoattractant in the system and study the cases of one and two populations in competition. By introducing global competitive/cooperative factors in terms of the total mass of the populations, we obtain, for a range of parameters, that any solution with positive and bounded initial data converges to a spatially homogeneous state with positive components. The proofs rely on the maximum principle for spatially homogeneous sub- and super-solutions. (paper)

  9. Simulation of Paramecium Chemotaxis Exposed to Calcium Gradients.

    Science.gov (United States)

    Sarvestani, Ali N; Shamloo, Amir; Ahmadian, Mohammad Taghi

    2016-06-01

    Paramecium or other ciliates have the potential to be utilized for minimally invasive surgery systems, making internal body organs accessible. Paramecium shows interesting responses to changes in the concentration of specific ions such as K(+), Mg(2+), and Ca(2+) in the ambient fluid. Some specific responses are observed as, changes in beat pattern of cilia and swimming toward or apart from the ion source. Therefore developing a model for chemotactic motility of small organisms is necessary in order to control the directional movements of these microorganisms before testing them. In this article, we have developed a numerical model, investigating the effects of Ca(2+) on swimming trajectory of Paramecium. Results for Ca(2+)-dependent chemotactic motility show that calcium gradients are efficient actuators for controlling the Paramecium swimming trajectory. After applying a very low Ca(2+) gradient, a directional chemotaxis of swimming Paramecium is observable in this model. As a result, chemotaxis is shown to be an efficient method for controlling the propulsion of these small organisms. PMID:26983824

  10. Emergent collective chemotaxis without single-cell gradient sensing

    CERN Document Server

    Camley, Brian A; Levine, Herbert; Rappel, Wouter-Jan

    2015-01-01

    Many eukaryotic cells chemotax, sensing and following chemical gradients. However, even if single cells do not chemotax significantly, small clusters may still follow a gradient; this behavior is observed in neural crest cells and during border cell migration in Drosophila, but its origin remains puzzling. Here, we study this "collective guidance" analytically and computationally. We show collective chemotaxis can exist without single-cell chemotaxis if contact inhibition of locomotion (CIL), where cells polarize away from cell-cell contact, is regulated by the chemoattractant. We present explicit formulas for how cluster velocity and chemotactic index depend on the number and organization of cells in the cluster. Pairs of cells will have velocities that are strongly dependent on the cell pair's orientation: this provides a simple test for the presence of collective guidance in neural crest cells and other systems. We also study cluster-level adaptation, amplification, and cohesion via co-attraction.

  11. Modeling of chemotactic steering of bacteria-based microrobot using a population-scale approach.

    Science.gov (United States)

    Cho, Sunghoon; Choi, Young Jin; Zheng, Shaohui; Han, Jiwon; Ko, Seong Young; Park, Jong-Oh; Park, Sukho

    2015-09-01

    The bacteria-based microrobot (Bacteriobot) is one of the most effective vehicles for drug delivery systems. The bacteriobot consists of a microbead containing therapeutic drugs and bacteria as a sensor and an actuator that can target and guide the bacteriobot to its destination. Many researchers are developing bacteria-based microrobots and establishing the model. In spite of these efforts, a motility model for bacteriobots steered by chemotaxis remains elusive. Because bacterial movement is random and should be described using a stochastic model, bacterial response to the chemo-attractant is difficult to anticipate. In this research, we used a population-scale approach to overcome the main obstacle to the stochastic motion of single bacterium. Also known as Keller-Segel's equation in chemotaxis research, the population-scale approach is not new. It is a well-designed model derived from transport theory and adaptable to any chemotaxis experiment. In addition, we have considered the self-propelled Brownian motion of the bacteriobot in order to represent its stochastic properties. From this perspective, we have proposed a new numerical modelling method combining chemotaxis and Brownian motion to create a bacteriobot model steered by chemotaxis. To obtain modeling parameters, we executed motility analyses of microbeads and bacteriobots without chemotactic steering as well as chemotactic steering analysis of the bacteriobots. The resulting proposed model shows sound agreement with experimental data with a confidence level <0.01. PMID:26487902

  12. Computational modeling of chemotactic signaling and aggregation of microglia around implantation site during deep brain stimulation

    Science.gov (United States)

    Silchenko, A. N.; Tass, P. A.

    2013-10-01

    It is well established that prolonged electrical stimulation of brain tissue causes massive release of ATP in the extracellular space. The released ATP and the products of its hydrolysis, such as ADP and adenosine, become the main elements mediating chemotactic sensitivity and motility of microglial cells via subsequent activation of P2Y2,12 as well as A3A and A2A adenosine receptors. The size of the sheath around the electrode formed by the microglial cells is an important criterion for the optimization of the parameters of electrical current delivered to brain tissue. Here, we study a purinergic signaling pathway underlying the chemotactic motion of microglia towards the implanted electrode during deep brain stimulation. We present a computational model describing formation of a stable aggregate around the implantation site due to the joint chemo-attractive action of ATP and ADP together with a mixed influence of extracellular adenosine. The model was built in accordance with the classical Keller-Segel approach and includes an equation for the cells' density as well as equations describing the hydrolysis of extracellular ATP via successive reaction steps ATP →ADP →AMP →adenosine. The results of our modeling allowed us to reveal the dependence of the width of the encapsulating layer around the electrode on the amount of ATP released due to permanent electrical stimulation. The dependences of the aggregates' size on the parameter governing the nonlinearity of interaction between extracellular adenosine and adenosine receptors are also analyzed.

  13. Spatial regulation of the cAMP-dependent protein kinase during chemotactic cell migration.

    Science.gov (United States)

    Howe, Alan K; Baldor, Linda C; Hogan, Brian P

    2005-10-01

    Historically, the cAMP-dependent protein kinase (PKA) has a paradoxical role in cell motility, having been shown to both facilitate and inhibit actin cytoskeletal dynamics and cell migration. In an effort to understand this dichotomy, we show here that PKA is regulated in subcellular space during cell migration. Immunofluorescence microscopy and biochemical enrichment of pseudopodia showed that type II regulatory subunits of PKA and PKA activity are enriched in protrusive cellular structures formed during chemotaxis. This enrichment correlates with increased phosphorylation of key cytoskeletal substrates for PKA, including the vasodilator-stimulated phosphoprotein (VASP) and the protein tyrosine phosphatase containing a PEST motif. Importantly, inhibition of PKA activity or its ability to interact with A kinase anchoring proteins inhibited the activity of the Rac GTPase within pseudopodia. This effect correlated with both decreased guanine nucleotide exchange factor activity and increased GTPase activating protein activity. Finally, inhibition of PKA anchoring, like inhibition of total PKA activity, inhibited pseudopod formation and chemotactic cell migration. These data demonstrate that spatial regulation of PKA via anchoring is an important facet of normal chemotactic cell movement.

  14. Effect of Monocyte Chemotactic Protein-1 on the Intraperitoneal Adhesion Formation

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    In order to study the role of monocyte chemotactic protein-1 (MCP-1) in the intra-peritoneal adhesion formation, 23 infertile patients undergoing laparoscopic operation were divided into two groups: experimental group including 12 patients with intra-peritoneal adhesion and control group including 11 patients without intra-peritoneal adhesion. Peritoneal fluid (PF) and peritoneum were collected from these patients during laparoscopic examination. The expression levels of MCP-l protein and MCP-1 mRNA were detected by using enzyme-linked immunosorbent assay (ELISA) and dot blot analysis method respectively. It was found that the levels of MCP-1 protein in PF of the patients with peritoneal adhesion were significantly higher than in the control group (0. 44±0.11 ng/ml vs 0. 19+0. 09 ng/ml respectively, P<0. 01 ). The level of MCP-1 mRNA in the peritoneum of the patients with peritoneal adhesion was significantly higher than in the control group (48.61±3.72 vs 19. 87±2.54 respectively, P<0. 01). It was suggested that MCP-1 might play a role in the adhesion formation, and chemotactic cytokines expressing in the peritoneal mesothelial cells might be take part in the process.

  15. Chemotactic behavior of deep subsurface bacteria toward carbohydrates, amino acids and a chlorinated alkene

    Energy Technology Data Exchange (ETDEWEB)

    Lopez de Victoria, G. (Puerto Rico Univ., Rio Piedras (Puerto Rico). Dept. of Biology)

    1989-02-01

    The chemotactic behavior of deep terrestrial subsurface bacteria toward amino acids, carbohydrates and trichloroethylene was assayed using a modification of the capillary method and bacterial enumeration by acridine orange direct counts. Eleven isolates of bacteria isolated from six different geological formations were investigated. A bimodal response rather than an absolute positive or negative response was observed in most assays. Most of the isolates were positively chemotactic to low concentrations of substrates and were repelled by high concentrations of the same substrate. However, this was not the case for trichloroethylene (TCE) which was mostly an attractant and elicited the highest responses in all the isolates when compared with amino acids and carbohydrates. The movement rates of these isolates in aseptic subsurface sediments in the absence and presence of TCE were also determined using a laboratory model. All of the isolates showed distinct response range, peak, and threshold concentrations when exposed to the same substrates suggesting that they are possibly different species as has been inferred from DNA homology studies. 101 refs., 4 figs., 57 tabs.

  16. CONSTRUCTION OF EUKARYOTIC EXPRESSION VECTOR FOR HUMAN CCL21 AND CHARACTERIZATION OF ITS CHEMOTACTIC ACTIVITY

    Institute of Scientific and Technical Information of China (English)

    HOU Li; LIU Qi; JIAO Yu-lian; ZHANG Jie; WANG Lai-cheng; MA Chun-yan; CUI Bin; ZHANG Xue; ZHAO Yue-ran

    2006-01-01

    Objective: To obtain recombinant human CCL21 with biological activity from eukaryotic expression system for further use in cancer gene therapy. Methods: A fragment of human CCL21 gene was obtained from pSK-hCCL21 plasmid digested by Xho I and BamH I, inserted into the responding sites of eukaryotic expression vector pVAX1, and then transfected into COS-7 cells by electroporation method. The expression of hCCL21 protein was detected by western blotting analysis. The in vitro chemotaxis assay was used to test the chemotactic function of the expression product to lymphocytes. Results: Human CCL21 protein was expressed by transfected COS-7 cells with recombinant plasmid containing hCCL21 gene, and was verified by western blotting. The in vitro chemotaxis assay demonstrated that human CCL21 protein had a potent chemotactic function to lymphocytes. Conclusion: Human CCL21 was successfully and transiently expressed in eukaryotic cells, which lays some foundation for the study of CCL21 gene therapy in murine tumor models.

  17. Real-time analysis of integrin-mediated chemotactic migration of T lymphocytes within 3-D extracellular matrix-like gels.

    Science.gov (United States)

    Franitza, S; Alon, R; Lider, O

    1999-05-27

    We have developed a novel 3-D gel reconstituted with major extracellular matrix (ECM) glycoproteins to follow the dynamics of migration of human T cells locomoting, in real-time, on gradients formed by representative chemoattractants: the C-C chemokine RANTES, and the pro-inflammatory cytokine IL-2. In the absence of chemoattractants, none of the T cells migrated directionally and the levels of random migration or cell polarization were low. However, major fractions of T cells placed in IL-2 and RANTES gradients in the gels polarized immediately after exposure to the chemoattractants. Shortly after polarization, 25% of the T cells migrated, in either a random or directional fashion, towards the sources of the chemoattractants; additional 5-10% of the cells remained polarized but stationary. The number of T cells migrating directionally towards RANTES or IL-2 peaked along with the formation of the chemotactic gradients. The directional migration of T cells was increased by a short pre-exposure to low doses of IL-2, which did not alter the level of expression of the beta1 integrins. The directional migration of T cells towards IL-2 and RANTES was mediated by IL-2R and pertussis toxin-sensitive receptors, respectively, and the directional, and to a lesser degree, the random locomotion of T cells induced by both chemoattractants required intact tyrosine kinase signaling and activities of the alpha4, alpha5, and, to a lesser degree, the alpha2 and alpha6 members the beta1 integrins. Our system enables the real-time tracking of individual locomoting lymphocytes and the analysis of their dynamic interactions with ECM components and cytokines. PMID:10365778

  18. Gradient sensing by a bistable regulatory motif enhances signal amplification but decreases accuracy in individual cells

    Science.gov (United States)

    Sharma, Rati; Roberts, Elijah

    2016-06-01

    Many vital eukaryotic cellular functions require the cell to respond to a directional gradient of a signaling molecule. The first two steps in any eukaryotic chemotactic/chemotropic pathway are gradient detection and cell polarization. Like many processes, such chemotactic and chemotropic decisions are made using a relatively small number of molecules and are thus susceptible to internal and external fluctuations during signal transduction. Large cell-to-cell variations in the magnitude and direction of a response are therefore possible and do, in fact, occur in natural systems. In this work we use three-dimensional probabilistic modeling of a simple gradient sensing pathway to study the capacity for individual cells to accurately determine the direction of a gradient, despite fluctuations. We include a stochastic external gradient in our simulations using a novel gradient boundary condition modeling a point emitter a short distance away. We compare and contrast three different variants of the pathway, one monostable and two bistable. The simulation data show that an architecture combining bistability with spatial positive feedback permits the cell to both accurately detect and internally amplify an external gradient. We observe strong polarization in all individual cells, but in a distribution of directions centered on the gradient. Polarization accuracy in our study was strongly dependent upon a spatial positive feedback term that allows the pathway to trade accuracy for polarization strength. Finally, we show that additional feedback links providing information about the gradient to multiple levels in the pathway can help the cell to refine initial inaccuracy in the polarization direction.

  19. A model for cell type localization in the migrating slug of Dictyostelium discoideum based on differential chemotactic sensitivity to cAMP and differential sensitivity to suppression of chemotaxis by ammonia

    Indian Academy of Sciences (India)

    Ira N Feit; Jeffrey Pawlikowski; Caroline Zawilski

    2007-03-01

    The three basic cell types in the migrating slug of Dictyostelium discoideum show differential chemotactic response to cyclic AMP (cAMP) and differential sensitivity to suppression of the chemotaxis by ammonia. The values of these parameters indicate a progressive maturation of chemotactic properties during the transdifferentiation of slug cell types. We present a model that explains the localization of the three cell types within the slug based on these chemotactic differences and on the maturation of their chemotactic properties.

  20. Boc SPPS of two hydrophobic peptides using a ''solubilising tail'' strategy : Dodecaalanine and chemotactic protein 10(42-55)

    NARCIS (Netherlands)

    Englebretsen, DR; Alewood, PF

    1996-01-01

    The solid phase syntheses of the hydrophobic peptides dodecaalanine and chemotactic protein-10(42-55) were achieved using a ''solubilising tail'' strategy. Peptide constructs of the form H-hydrophobic peptide-glycolamide ester-(Gly-Arg)(4)-Gly-OH were synthesised by Boc SPPS. The peptide-constructs

  1. Bacteria are not too small for spatial sensing of chemical gradients: An experimental evidence

    DEFF Research Database (Denmark)

    Thar, Roland; Kühl, Michael

    2003-01-01

    as they translate along as well as rotate around their short axis, i.e., the pathways of the cell poles describe a double helix. The natural habitat of the bacteria is characterized by steep oxygen gradients where they accumulate in a band at their preferred oxygen concentration of ˜2 µM. Single cells leaving......By analyzing the chemotactic behavior of a recently described marine bacterial species, we provide experimental evidence that bacteria are not too small for sensing chemical gradients spatially. The bipolar flagellated vibrioid bacteria (typical size 2 × 6 µm) exhibit a unique motility pattern...... the band toward the oxic region typically return to the band within 16 s following a U-shaped track. A detailed analysis of the tracks reveals that the cells must be able to sense the oxygen gradient perpendicular to their swimming direction. Thus, they can detect oxygen gradients along a distance of ˜5 µm...

  2. How many consumer levels can survive in a chemotactic food chain?

    Institute of Scientific and Technical Information of China (English)

    Jing LIU; Chunhua OU

    2009-01-01

    We investigate the effect and the impact of predator-prey interactions, diffusivity and chemotaxis on the ability of survival of multiple consumer levels in a predator-prey microbial food chain. We aim at answering the question of how many consumer levels can survive from a dynamical system point of view. To solve this standing issue on food-chain length, first we construct a chemotactic food chain model. A priori bounds of the steady state populations are obtained. Then under certain sufficient conditions combining the effect of conversion efficiency, diffusivity and chemotaxis parameters, we derive the co-survival of all consumer levels, thus obtaining the food chain length of our model. Numerical simulations not only confirm our theoretical results, but also demonstrate the impact of conversion efficiency, diffusivity and chemotaxis behavior on the survival and stability of various consumer levels.

  3. Biodegradation of naphthalene and anthracene by chemo-tactically active rhizobacteria of populus deltoides

    Directory of Open Access Journals (Sweden)

    Sandeep Bisht

    2010-12-01

    Full Text Available Several naphthalene and anthracene degrading bacteria were isolated from rhizosphere of Populus deltoides, which were growing in non-contaminated soil. Among these, four isolates, i.e. Kurthia sp., Micrococcus varians, Deinococcus radiodurans and Bacillus circulans utilized chrysene, benzene, toluene and xylene, in addition to anthracene and naphthalene. Kurthia sp and B. circulans showed positive chemotactic response for naphthalene and anthracene. The mean growth rate constant (K of isolates were found to increase with successive increase in substrate concentration (0.5 to 1.0 mg/50ml. B. circulans SBA12 and Kurthia SBA4 degraded 87.5% and 86.6% of anthracene while, Kurthia sp. SBA4, B. circulans SBA12, and M. varians SBA8 degraded 85.3 %, 95.8 % and 86.8 % of naphthalene respectively after 6 days of incubation as determined by HPLC analysis.

  4. Expression and divalent cation binding properties of the novel chemotactic inflammatory protein psoriasin

    DEFF Research Database (Denmark)

    Vorum, H; Madsen, Peder; Rasmussen, H H;

    1996-01-01

    Psoriasin is a novel chemotactic inflammatory protein that possesses weak similarity to the S100 family members of Ca(2+)-binding proteins, and that is highly up-regulated in hyperproliferative psoriatic keratinocytes. Here we have used the psoriasin cDNA to express recombinant human (rh) psoriasin...... in Escherichia coli as a fusion protein containing a hexa His tag and a factor Xa cleavage site in the NH2-terminus. The protein was purified by affinity chromatography on Ni(2+)-nitrilotriacetic acid agarose, digested with factor Xa, further purified by ion-exchange chromatography and characterized by two...... in KCl and four in NaCl, with an affinity just below 1 x 10(4) M-1 for the first molecule. Thus psoriasin does not bind significant amounts of Zn2+ at physiological concentrations. Mg2+ and Ca2+ are bound anti-cooperatively and binding of each of the ions (Ca2+, Zn2+, or Mg2+), is accompanied...

  5. Direct and indirect radioiodination of protein: comparative study of chemotactic peptide labeling

    International Nuclear Information System (INIS)

    The development of simple methods for protein radioiodination have stimulated the use of radioiodinated peptides in vivo. There are two basic methods for labeling proteins with radioiodine: direct labeling, reaction of an electrophilic radioiodine with functional activated groups on protein, like the phenol ring in the tyrosine residue, and the conjugation of a previously radioiodinated molecule to the protein, referred as indirect method. The great problem related to the direct radioiodination of proteins is the in vivo dehalogenation. This problem can be minimized if a non-phenolic prosthetic group is used in the indirect radioiodination of the peptide. The ATE prosthetic group, N-succinimidyl 3-(tri-n-butylstannyl) benzoate, when radioiodinated by electrophilic iododestannilation produces N-succinimidyl 3-[123l/131l] iodine benzoate (SIB) that is subsequently conjugated to the protein by the acylation of the lysine group. There are many radiopharmaceuticals employed in scintigraphic images of infection and inflammation used with some limitations. These limitations stimulated the improvement of a new class of radiopharmaceuticals, the receptor-specific related labeled peptides, as the mediators of the inflammatory response, that presents high affinity by receptors expressed in the inflammation process, and fast clearance from blood and non-target tissues. One of these molecules is the synthetic chemotactic peptide fNleLFNIeYK that presents potent chemotaxis for leukocytes, with high affinity by the receptors presented in polymorphonuclear leukocytes and mononuclear phagocytes. The objective of this work included the synthesis of ATE prosthetic group and comparative radioiodination of the chemotactic peptide fNleLFNIeYK by direct and indirect methods, with radiochemical purity determination and evaluation of in vivo and in vitro stability of the compounds. This work presented an original contribution in the comparative biological distribution studies of the

  6. Down-regulation of the chemokine receptor CCR5 by activation of chemotactic formyl peptide receptor in human monocytes.

    Science.gov (United States)

    Shen, W; Li, B; Wetzel, M A; Rogers, T J; Henderson, E E; Su, S B; Gong, W; Le, Y; Sargeant, R; Dimitrov, D S; Oppenheim, J J; Wang, J M

    2000-10-15

    Interactions between cell surface receptors are important regulatory elements in the complex host responses to infections. In this study, it is shown that a classic chemotactic factor, the bacterial chemotactic peptide N-formyl-methionyl-leucylphenyl-alanine (fMLF), rapidly induced a protein-kinase-C-mediated serine phosphorylation and down-regulation of the chemokine receptor CCR5, which serves as a major human immunodeficiency virus (HIV)-1 coreceptor. The fMLF binding to its receptor, formyl peptide receptor (FPR), resulted in significant attenuation of cell responses to CCR5 ligands and in inhibition of HIV-1-envelope-glycoprotein-mediated fusion and infection of cells expressing CD4, CCR5, and FPR. The finding that the expression and function of CCR5 can be regulated by peptides that use an unrelated receptor may provide a novel approach to the design of anti-inflamatory and antiretroviral agents. (Blood. 2000;96:2887-2894)

  7. Mixture Theory Study of Role of Growth Factor Gradients on Breast Cancer Chemotaxis

    Science.gov (United States)

    Chakraborty, Sreyashi; Schuff, Mary; Voigt, Elizabeth; Nauman, Eric; Rylander, Marissa; Vlachos, Pavlos

    2014-11-01

    The transport of chemotactic agents is strongly influenced by variation in interstitial flows in different types of tissue. The mixture theory model of the fluid and solute transport in the microvasculature of tissues accounts for transport in the vessel lumen, vessel wall and the interstitial space separately. In the present study we use this model to develop a three dimensional geometry of the tumor microenvironment platform incorporating a physiological concentration of growth factor protein through blood flow in an extracellular collagen matrix. We quantify chemotaxis in response to solute gradients of varying magnitude formed by diffusion of proteins into the surrounding collagen. The numerical analysis delineates the dependence of hydraulic permeability coefficient on solute concentration. The preliminary results show the existence of a linear concentration gradient in the central plane between the micro-channels and a strong nonlinear gradient at the remaining parts of the system.

  8. Modification of β-Defensin-2 by Dicarbonyls Methylglyoxal and Glyoxal Inhibits Antibacterial and Chemotactic Function In Vitro.

    Directory of Open Access Journals (Sweden)

    Janna G Kiselar

    Full Text Available Beta-defensins (hBDs provide antimicrobial and chemotactic defense against bacterial, viral and fungal infections. Human β-defensin-2 (hBD-2 acts against gram-negative bacteria and chemoattracts immature dendritic cells, thus regulating innate and adaptive immunity. Immunosuppression due to hyperglycemia underlies chronic infection in Type 2 diabetes. Hyperglycemia also elevates production of dicarbonyls methylgloxal (MGO and glyoxal (GO.The effect of dicarbonyl on defensin peptide structure was tested by exposing recombinant hBD-2 (rhBD-2 to MGO or GO with subsequent analysis by MALDI-TOF MS and LC/MS/MS. Antimicrobial function of untreated rhBD-2 vs. rhBD-2 exposed to dicarbonyl against strains of both gram-negative and gram-positive bacteria in culture was determined by radial diffusion assay. The effect of dicarbonyl on rhBD-2 chemotactic function was determined by chemotaxis assay in CEM-SS cells.MGO or GO in vitro irreversibly adducts to the rhBD-2 peptide, and significantly reduces antimicrobial and chemotactic functions. Adducts derive from two arginine residues, Arg22 and Arg23 near the C-terminus, and the N-terminal glycine (Gly1. We show by radial diffusion testing on gram-negative E. coli and P. aeruginosa, and gram-positive S. aureus, and a chemotaxis assay for CEM-SS cells, that antimicrobial activity and chemotactic function of rhBD-2 are significantly reduced by MGO.Dicarbonyl modification of cationic antimicrobial peptides represents a potential link between hyperglycemia and the clinical manifestation of increased susceptibility to infection, protracted wound healing, and chronic inflammation in undiagnosed and uncontrolled Type 2 diabetes.

  9. Monocyte chemotactic protein-1 expression as a prognosic biomarker in patients with solid tumor: a meta analysis

    OpenAIRE

    Wang, Hong; Zhang, Qiongwen; Kong, Hongyu; Zeng, Yunhui; Hao, Meiqin; Yu, Ting; Peng, Jing; Xu, Zhao; Chen, Jingquan; Shi, Huashan

    2014-01-01

    Purpose: A great deal of studies have been performed on the prognostic value of monocyte chemotactic protein-1 (MCP-1) in solid tumors in recent years. However, no consistent outcomes are reported. Therefore, the prognostic value of MCP-1 still remains controversial in patients with solid tumors. Here we aimed to evaluate the prognostic value of MCP-1 expression for patients with solid tumors. Methods: Comprehensive literature was selected from PUBMED and EMBASE and clinical studies which rep...

  10. Comamonas testosteroni uses a chemoreceptor for tricarboxylic acid cycle intermediates to trigger chemotactic responses towards aromatic compounds.

    Science.gov (United States)

    Ni, Bin; Huang, Zhou; Fan, Zheng; Jiang, Cheng-Ying; Liu, Shuang-Jiang

    2013-11-01

    Bacterial chemotaxis towards aromatic compounds has been frequently observed; however, knowledge of how bacteria sense aromatic compounds is limited. Comamonas testosteroni CNB-1 is able to grow on a range of aromatic compounds. This study investigated the chemotactic responses of CNB-1 to 10 aromatic compounds. We constructed a chemoreceptor-free, non-chemotactic mutant, CNB-1Δ20, by disruption of all 19 putative methyl-accepting chemotaxis proteins (MCPs) and the atypical chemoreceptor in strain CNB-1. Individual complementation revealed that a putative MCP (tagged MCP2201) was involved in triggering chemotaxis towards all 10 aromatic compounds. The recombinant sensory domain of MCP2201 did not bind to 3- or 4-hydroxybenzoate, protocatechuate, catechol, benzoate, vanillate and gentisate, but bound oxaloacetate, citrate, cis-aconitate, isocitrate, α-ketoglutarate, succinate, fumarate and malate. The mutant CNB-1ΔpmdF that lost the ability to metabolize 4-hydroxybenzoate and protocatechuate also lost its chemotactic response to these compounds, suggesting that taxis towards aromatic compounds is metabolism-dependent. Based on the ligand profile, we proposed that MCP2201 triggers taxis towards aromatic compounds by sensing TCA cycle intermediates. Our hypothesis was further supported by the finding that introduction of the previously characterized pseudomonad chemoreceptor (McpS) for TCA cycle intermediates into CNB-1Δ20 likewise triggered chemotaxis towards aromatic compounds.

  11. Hydrocarbon biodegradation and dynamic laser speckle for detecting chemotactic responses at low bacterial concentration

    Institute of Scientific and Technical Information of China (English)

    Melina Nisenbaum; Gonzalo Hernán Sendra; Gastón Alfredo Cerdá Gilbert; Marcelo Scagliola; Jorge Froilán González; Silvia Elena Murialdo

    2013-01-01

    We report on the biodegradation of pure hydrocarbons and chemotaxis towards these compounds by an isolated chlorophenol degrader,Pseudomonas strain H.The biochemical and phylogenetic analysis of the 16S rDNA sequence identified Pseudomonas strain H as having 99.56% similarity with P.aeruginosa PA01.This strain was able to degrade n-hexadecane,1-undecene,1-nonene,1-decene,1-dodecene and kerosene.It grew in the presence of 1-octene,while this hydrocarbons is toxic to other hydrocarbons degraders.Pseudomonas strain H was also chemotactic towards n-hexadecane,kerosene,1-undecene and 1-dodecene.These results show that this Pseudomonas strain H is an attractive candidate for hydrocarbon-containing wastewater bioremediation in controlled environments.Since the classical standard techniques for detecting chemotaxis are not efficient at low bacterial concentrations,we demonstrate the use of the dynamic speckle laser method,which is simple and inexpensive,to confirm bacterial chemotaxis at low cell concentrations (less than 105 colony-forming unit per millilitre (CFU/mL)) when hydrocarbons are the attractants.

  12. Influence of corticosteroids on chemotactic response and collagen metabolism of human skin fibroblasts.

    Science.gov (United States)

    Hein, R; Mauch, C; Hatamochi, A; Krieg, T

    1988-07-15

    Following chronic administration of corticosteroids in vivo, a number of complications occur, which mainly involve the metabolism of connective tissue cells. Therefore, several attempts have been made to develop corticosteroids, which show less pronounced side effects. Fibroblasts were kept in monolayer cultures and were exposed to corticosteroids demonstrating similar anti-inflammatory activity (prednicarbate, desoximetasone). Chemotaxis of fibroblasts was studied over 4 hr, protein and collagen synthesis were estimated using proteinchemical methods and also by dot blot hybridization. Corticosteroids used in a high dosage (10 microM) affected all biosynthetic capacities of the investigated fibroblasts. Protein synthesis and production of collagen types I and III were reduced and a similar decrease of mRNA levels for collagen type I could be found indicating an influence on the pretranslational control. In the same concentrations desoximetasone was much more active than prednicarbate. Fibroblast migration was dosage dependently inhibited from 10(-9) M to 10(-5) M for desoximetasone, while incubation with prednicarbate did not cause a reduction of the chemotactic response at concentrations lower than 10(-7) M. These data suggest that modifications of corticosteroids might result in a dissociation of some of their biological activities and can specifically influence their effects on biosynthetic capacities of fibroblasts. PMID:3395353

  13. Anti-coreceptor therapy drives selective T cell egress by suppressing inflammation-dependent chemotactic cues

    Science.gov (United States)

    Martin, Aaron J.; Clark, Matthew; Gojanovich, Gregory; Manzoor, Fatima; Miller, Keith; Kline, Douglas E.; Morillon, Y. Maurice; Wang, Bo

    2016-01-01

    There continues to be a need for immunotherapies to treat type 1 diabetes in the clinic. We previously reported that nondepleting anti-CD4 and -CD8 Ab treatment effectively reverses diabetes in new-onset NOD mice. A key feature of the induction of remission is the egress of the majority of islet-resident T cells. How this occurs is undefined. Herein, the effects of coreceptor therapy on islet T cell retention were investigated. Bivalent Ab binding to CD4 and CD8 blocked TCR signaling and T cell cytokine production, while indirectly downregulating islet chemokine expression. These processes were required for T cell retention, as ectopic IFN-γ or CXCL10 inhibited Ab-mediated T cell purging. Importantly, treatment of humanized mice with nondepleting anti–human CD4 and CD8 Ab similarly reduced tissue-infiltrating human CD4+ and CD8+ T cells. These findings demonstrate that Ab binding of CD4 and CD8 interrupts a feed-forward circuit by suppressing T cell–produced cytokines needed for expression of chemotactic cues, leading to rapid T cell egress from the islets. Coreceptor therapy therefore offers a robust approach to suppress T cell–mediated pathology by purging T cells in an inflammation-dependent manner.

  14. Enterohepatic circulation of bacterial chemotactic peptide in rats with experimental colitis

    International Nuclear Information System (INIS)

    The association of hepatobiliary disorders with colonic inflammation is well recognized. Although the pathophysiology is obscure, increased permeation of toxic bacterial products across the inflamed gut to the portal circulation might be one mechanism. Potentially toxic metabolites include N-formylated chemotactic peptides that are produced by several species of intestinal bacteria and can be detected in colonic fluid in vivo. To investigate the metabolic fate of one of these low molecular weight proinflammatory peptides, N-formyl L-methionine L-leucine 125I-L-tyrosine was introduced into colon loops of healthy rats (n = 10) and rats with experimental colitis (n = 15) induced by rectal instillation of 15% (vol/vol) acetic acid. Gut, liver, and blood radioactivity were monitored by external gamma-counting and radioactivity in bile was measured by biliary catheter drainage into a well counter. Bile was processed by high-performance liquid chromatography to determine the amount of intact, bioactive peptide excreted over 3 h. After colonic instillation of 1 nmol of peptide, the mean (+/- SEM) biliary excretion of intact peptide was 6.4 +/- 2.0 pmol in normal rats and 49.0 +/- 20 pmol in rats with colitis (p less than 0.01). An enterohepatic circulation of synthetic N-formyl L-methionine L-leucine L-tyrosine has been demonstrated in the rat. Experimental colitis was associated with an eightfold increase in biliary excretion of this proinflammatory bacterial peptide. Proinflammatory bacterial peptides synthesized by colonic bacteria could be important in the pathophysiology of colon inflammation and its frequently associated hepatobiliary complications

  15. Chemotactic signal transduction and phosphate metabolism as adaptive strategies during citrus canker induction by Xanthomonas citri.

    Science.gov (United States)

    Moreira, Leandro Marcio; Facincani, Agda Paula; Ferreira, Cristiano Barbalho; Ferreira, Rafael Marine; Ferro, Maria Inês Tiraboshi; Gozzo, Fabio Cesar; de Oliveira, Julio Cezar Franco; Ferro, Jesus Aparecido; Soares, Márcia Regina

    2015-03-01

    The genome of Xanthomonas citri subsp. Citri strain 306 pathotype A (Xac) was completely sequenced more than 10 years; to date, few studies involving functional genomics Xac and its host compatible have been developed, specially related to adaptive events that allow the survival of Xac within the plant. Proteomic analysis of Xac showed that the processes of chemotactic signal transduction and phosphate metabolism are key adaptive strategies during the interaction of a pathogenic bacterium with its plant host. The results also indicate the importance of a group of proteins that may not be directly related to the classical virulence factors, but that are likely fundamental to the success of the initial stages of the infection, such as methyl-accepting chemotaxis protein (Mcp) and phosphate specific transport (Pst). Furthermore, the analysis of the mutant of the gene pstB which codifies to an ABC phosphate transporter subunit revealed a complete absence of citrus canker symptoms when inoculated in compatible hosts. We also conducted an in silico analysis which established the possible network of genes regulated by two-component systems PhoPQ and PhoBR (related to phosphate metabolism), and possible transcriptional factor binding site (TFBS) motifs of regulatory proteins PhoB and PhoP, detaching high degree of conservation of PhoB TFBS in 84 genes of Xac genome. This is the first time that chemotaxis signal transduction and phosphate metabolism were therefore indicated to be fundamental to the process of colonization of plant tissue during the induction of disease associated with Xanthomonas genus bacteria. PMID:25403594

  16. Coccidioides Endospores and Spherules Draw Strong Chemotactic, Adhesive, and Phagocytic Responses by Individual Human Neutrophils.

    Directory of Open Access Journals (Sweden)

    Cheng-Yuk Lee

    Full Text Available Coccidioides spp. are dimorphic pathogenic fungi whose parasitic forms cause coccidioidomycosis (Valley fever in mammalian hosts. We use an innovative interdisciplinary approach to analyze one-on-one encounters between human neutrophils and two forms of Coccidioides posadasii. To examine the mechanisms by which the innate immune system coordinates different stages of the host response to fungal pathogens, we dissect the immune-cell response into chemotaxis, adhesion, and phagocytosis. Our single-cell technique reveals a surprisingly strong response by initially quiescent neutrophils to close encounters with C. posadasii, both from a distance (by complement-mediated chemotaxis as well as upon contact (by serum-dependent adhesion and phagocytosis. This response closely resembles neutrophil interactions with Candida albicans and zymosan particles, and is significantly stronger than the neutrophil responses to Cryptococcus neoformans, Aspergillus fumigatus, and Rhizopus oryzae under identical conditions. The vigorous in vitro neutrophil response suggests that C. posadasii evades in vivo recognition by neutrophils through suppression of long-range mobilization and recruitment of the immune cells. This observation elucidates an important paradigm of the recognition of microbes, i.e., that intact immunotaxis comprises an intricate spatiotemporal hierarchy of distinct chemotactic processes. Moreover, in contrast to earlier reports, human neutrophils exhibit vigorous chemotaxis toward, and frustrated phagocytosis of, the large spherules of C. posadasii under physiological-like conditions. Finally, neutrophils from healthy donors and patients with chronic coccidioidomycosis display subtle differences in their responses to antibody-coated beads, even though the patient cells appear to interact normally with C. posadasii endospores.

  17. Chemotactic signal transduction and phosphate metabolism as adaptive strategies during citrus canker induction by Xanthomonas citri.

    Science.gov (United States)

    Moreira, Leandro Marcio; Facincani, Agda Paula; Ferreira, Cristiano Barbalho; Ferreira, Rafael Marine; Ferro, Maria Inês Tiraboshi; Gozzo, Fabio Cesar; de Oliveira, Julio Cezar Franco; Ferro, Jesus Aparecido; Soares, Márcia Regina

    2015-03-01

    The genome of Xanthomonas citri subsp. Citri strain 306 pathotype A (Xac) was completely sequenced more than 10 years; to date, few studies involving functional genomics Xac and its host compatible have been developed, specially related to adaptive events that allow the survival of Xac within the plant. Proteomic analysis of Xac showed that the processes of chemotactic signal transduction and phosphate metabolism are key adaptive strategies during the interaction of a pathogenic bacterium with its plant host. The results also indicate the importance of a group of proteins that may not be directly related to the classical virulence factors, but that are likely fundamental to the success of the initial stages of the infection, such as methyl-accepting chemotaxis protein (Mcp) and phosphate specific transport (Pst). Furthermore, the analysis of the mutant of the gene pstB which codifies to an ABC phosphate transporter subunit revealed a complete absence of citrus canker symptoms when inoculated in compatible hosts. We also conducted an in silico analysis which established the possible network of genes regulated by two-component systems PhoPQ and PhoBR (related to phosphate metabolism), and possible transcriptional factor binding site (TFBS) motifs of regulatory proteins PhoB and PhoP, detaching high degree of conservation of PhoB TFBS in 84 genes of Xac genome. This is the first time that chemotaxis signal transduction and phosphate metabolism were therefore indicated to be fundamental to the process of colonization of plant tissue during the induction of disease associated with Xanthomonas genus bacteria.

  18. Chemotactic and mitogenic stimuli of neuronal apoptosis in patients with medically intractable temporal lobe epilepsy

    Science.gov (United States)

    Fiala, Milan; Avagyan, Hripsime; Merino, Jose Joaquin; Bernas, Michael; Valdivia, Juan; Espinosa-Jeffrey, Araceli; Witte, Marlys; Weinand, Martin

    2012-01-01

    To identify the upstream signals of neuronal apoptosis in patients with medically intractable temporal lobe epilepsy (TLE), we evaluated by immunohistochemistry and confocal microscopy brain tissues of 13 TLE patients and 5 control patients regarding expression of chemokines and cell-cycle proteins. The chemokine RANTES (CCR5) and other CC-chemokines and apoptotic markers (caspase-3, -8, -9) were expressed in lateral temporal cortical and hippocampal neurons of TLE patients, but not in neurons of control cases. The chemokine RANTES is usually found in cytoplasmic and extracellular locations. However, in TLE neurons, RANTES was displayed in an unusual location, the neuronal nuclei. In addition, the cell-cycle regulatory transcription factor E2F1 was found in an abnormal location in neuronal cytoplasm. The pro-inflammatory enzyme cyclooxygenase-2 and cytokine interleukin-1β were expressed both in neurons of patients suffering from temporal lobe epilepsy and from cerebral trauma. The vessels showed fibrin leakage, perivascular macrophages and expression of IL-6 on endothelial cells. In conclusion, the cytoplasmic effects of E2F1 and nuclear effects of RANTES might have novel roles in neuronal apoptosis of TLE neurons and indicate a need to develop new medical and/or surgical neuroprotective strategies against apoptotic signaling by these molecules. Both RANTES and E2F1 signaling are upstream from caspase activation, thus the antagonists of RANTES and/or E2F1 blockade might be neuroprotective for patients with medically intractable temporal lobe epilepsy. The results have implications for the development of new medical and surgical therapies based on inhibition of chemotactic and mitogenic stimuli of neuronal apoptosis in patients with medically intractable temporal lobe epilepsy. PMID:22444245

  19. Modulation of signalling in neutrophils activated by a chemotactic peptide: calcium regulates diacyl glycerol metabolism

    Energy Technology Data Exchange (ETDEWEB)

    Korchak, H.M.; Vosshall, L.B.; Lundquist, K.F.

    1987-05-01

    Neutrophils activated by ligands such as the chemotactic peptide f-Met-Leu-Phe (FMLP) generate superoxide anion (O/sub 2//sup -/) and release specific and azurophil granule contents. The signalling for this response is thought to involve both elevated cytosolic Ca and protein kinase C activity. Receptor-occupation triggers a phospholipase C to cleave phosphatidyl inositol 4,5 bisphosphate (PIP/sub 2/) yielding inositol 1,4,5 trisphosphate, (IP/sub 3/), a trigger for intracellular Ca release, and diacyl glycerol (DG), which together with Ca activates protein kinase C. The DG can be metabolized to phosphatidic acid (PA). FMLP triggered a rapid increase in cytosolic Ca (fura-2). Loading cells with MAPTAM, and intracellular Ca buffer, suppressed this Ca transient in FMLP activated cells and inhibited O/sub 2//sup -/ generation to 12.5% of control, beta-glucuronidase release to 40.3% of control and lysozyme release to 55.1% of control. FMLP triggered a prompt decrease in PIP/sub 2/ in cells pre-labelled with /sup 32/P or /sup 3/H-inositol and an increase in PA and release of /sup 3/H-IP/sub 3/. A rapid increase in /sup 14/C-DG levels was also observed in /sup 14/C-glycerol pre-loaded cells activated by FMLP. Suppression of the Ca transient by buffering with MAPTAM inhibited elevation of /sup 14/C-DG. Breakdown of PIP/sub 2/ was not inhibited and elevation of /sup 32/P-PA was enhanced in MAPTAM loaded cells. Conversely, 200nM ionomycin which elevated cytosolic Ca to an equivalent level to 10/sup -7/M FMLP, triggered a rise in /sup 14/C-DG but not in PA.

  20. MiR-124 suppresses the chemotactic migration of rat mesenchymal stem cells toward HGF by downregulating Wnt/β-catenin signaling.

    Science.gov (United States)

    Yue, Qing; Zhang, Yu; Li, Xianyang; He, Lihong; Hu, Ya'nan; Wang, Xianyao; Xu, Xiaojing; Shen, Yixin; Zhang, Huanxiang

    2016-09-01

    Mesenchymal stem cells (MSCs) exhibit the potential to repair a wide variety of injured adult tissues. The migration capability of MSCs is an important determinant of the efficiency of MSC transplant therapy. MicroRNAs (miRNAs) are increasingly implicated in regulating the migration of MSCs. Herein, we show that the expression of miR-124 was downregulated in rat MSCs (rMSCs) treated with hepatocyte growth factor (HGF). Overexpression of miR-124 significantly reduced the chemotactic migration of rMSCs toward HGF, while inhibition of endogenous miR-124 promoted the chemotactic migration. A further study revealed that miR-124 directly targeted FZD4 and LRP6, which encode a receptor and co-receptor of the Wnt/β-catenin signaling pathway, respectively, thus reducing the activity of this signaling. Consistently, activation of the Wnt/β-catenin signaling pathway by LiCl and ΔN89β-catenin rescued the inhibitory effect of miR-124 on the chemotactic migration of rMSCs toward HGF, while inhibition of Wnt/β-catenin signaling by FH535 abrogated the enhanced chemotactic response achieved by the miR-124 inhibitor. Collectively, our study demonstrates that miR-124 downregulates Wnt/β-catenin signaling via targeting FZD4 and LRP6 and thus suppresses the chemotactic migration of rMSCs toward HGF.

  1. A Worldwide Competition to Compare the Speed and Chemotactic Accuracy of Neutrophil-Like Cells

    NARCIS (Netherlands)

    Skoge, Monica; Wong, Elisabeth; Hamza, Bashar; Bae, Albert; Martel, Joseph; Kataria, Rama; Keizer-Gunnink, Ineke; Kortholt, Arjan; Van Haastert, Peter J.M.; Charras, Guillaume; Janetopoulos, Christopher; Irimia, Daniel

    2016-01-01

    Chemotaxis is the ability to migrate towards the source of chemical gradients. It underlies the ability of neutrophils and other immune cells to hone in on their targets and defend against invading pathogens. Given the importance of neutrophil migration to health and disease, it is crucial to unders

  2. Chemotactic response of plant-growth-promoting bacteria towards roots of vesicular-arbuscular mycorrhizal tomato plants.

    Science.gov (United States)

    Gupta Sood, Sushma

    2003-08-01

    The chemotactic responses of the plant-growth-promoting rhizobacteria Azotobacter chroococcum and Pseudomonas fluorescens to roots of vesicular-arbuscular mycorrhizal (Glomus fasciculatum) tomato plants were determined. A significantly (P=0.05) greater number of bacterial cells of wild strains were attracted towards vesicular-arbuscular mycorrhizal tomato roots compared to non-vesicular-arbuscular mycorrhizal tomato roots. Substances exuded by roots served as chemoattractants for these bacteria. P. fluorescens was strongly attracted towards citric and malic acids, which were predominant constituents in root exudates of tomato plants. A. chroococcum showed a stronger response towards sugars than amino acids, but the response was weakest towards organic acids. The effects of temperature, pH, and soil water matric potential on bacterial chemotaxis towards roots were also investigated. In general, significantly (P=0.05) greater chemotactic responses of bacteria were observed at higher water matric potentials (0, -1, and -5 kPa), slightly acidic to neutral pH (6, 6.5 and 7), and at 20-30 degrees C (depending on the bacterium) than in other environmental conditions. It is suggested that chemotaxis of P. fluorescens and A. chroococcum towards roots and their exudates is one of the several steps in the interaction process between bacteria and vesicular-arbuscular mycorrhizal roots. PMID:19719591

  3. In vitro inhibitory effects of Moringa oleifera leaf extract and its major components on chemiluminescence and chemotactic activity of phagocytes.

    Science.gov (United States)

    Vongsak, Boonyadist; Gritsanapan, Wandee; Wongkrajang, Yuvadee; Jantan, Ibrahim

    2013-11-01

    The ethanol extract of Moringa oleifera Lam. leaves and its major constituents, crypto-chlorogenic acid, quercetin 3-O-glucoside and kaempferol 3-O-glucoside, were investigated on the respiratory burst of human whole blood and isolated human polymorphonuclear leukocytes (PMNs) using a luminol-based chemiluminescence assay. The chemotactic migration of PMNs was also investigated using the Boyden chamber technique. The ethanol extract demonstrated inhibitory activities on the oxidative burst and the chemotactic migration of PMNs. Quercetin 3-O-glucoside, crypto-chlorogenic acid, and kaempferol 3-O-glucoside, isolated from the extract, expressed relatively strong inhibitory activity on the oxidative burst of PMNs with IC50 values of 4.1, 6.7 and 7.0 microM, respectively, comparable with that of aspirin. They also demonstrated strong inhibition of chemotatic migration of PMNs with IC50 values of 9.5, 15.9 and 18.2 microM, respectively. The results suggest that M. oleifera leaves could modulate the immune response of human phagocytes, linking to its ethnopharmacological use as an anti-inflammatory agent. The immunomodulating activity of the plant was mainly due to its major components.

  4. Second gradient poromechanics

    CERN Document Server

    Sciarra, Giulio; Coussy, Olivier

    2010-01-01

    Second gradient theories have been developed in mechanics for treating different phenomena as capillarity in fluids, plasticity and friction in granular materials or shear band deformations. Here, there is an attempt of formulating a second gradient Biot like model for porous materials. In particular the interest is focused in describing the local dilatant behaviour of a porous material induced by pore opening elastic and capillary interaction phenomena among neighbouring pores and related micro-filtration phenomena by means of a continuum microstructured model. The main idea is to extend the classical macroscopic Biot model by including in the description second gradient effects. This is done by assuming that the surface contribution to the external work rate functional depends on the normal derivative of the velocity or equivalently assuming that the strain work rate functional depends on the porosity and strain gradients. According to classical thermodynamics suitable restrictions for stresses and second g...

  5. Gradient Particle Magnetohydrodynamics

    OpenAIRE

    Maron, Jason L.; Howes, Gregory G.

    2001-01-01

    We introduce Gradient Particle Magnetohydrodynamics (GPM), a new Lagrangian method for magnetohydrodynamics based on gradients corrected for the locally disordered particle distribution. The development of a numerical code for MHD simulation using the GPM algorithm is outlined. Validation tests simulating linear and nonlinear sound waves, linear MHD waves, advection of magnetic fields in a magnetized vortex, hydrodynamical shocks, and three-dimensional collapse are presented, demonstrating th...

  6. Beta-adrenergic receptor agonists induce the release of granulocyte chemotactic protein-2, oncostatin M, and vascular endothelial growth factor from macrophages

    NARCIS (Netherlands)

    Verhoeckx, K.C.M.; Doornbos, R.P.; Witkamp, R.F.; Greef, de J.; Rodenburg, R.J.T.

    2006-01-01

    Vascular endothelial growth factor (VEGF), oncostatin M (OSM), and granulocyte chemotactic protein-2 (GCP-2/CXCL6) are up-regulated in U937 macrophages and peripheral blood macrophages exposed to LPS, beta-adrenergic receptor (ß2-AR) agonists (e.g. zilpaterol, and clenbuterol) and some other agents

  7. Beta-adrenergic receptor agonists induce the release of granulocyte chemotactic protein-2, oncostatin M, and vascular endothelial growth factor from macrophages

    NARCIS (Netherlands)

    Verhoeckx, K.C.; Doornbos, R.P.; Witkamp, R.F.; Greef, J. van der; Rodenburg, R.J.T.

    2006-01-01

    Vascular endothelial growth factor (VEGF), oncostatin M (OSM), and granulocyte chemotactic protein-2 (GCP-2/CXCL6) are up-regulated in U937 macrophages and peripheral blood macrophages exposed to LPS, beta-adrenergic receptor (beta2-AR) agonists (e.g. zilpaterol, and clenbuterol) and some other agen

  8. Beta-adrenergic receptor agonists induce the release of granulocyte chemotactic protein-2, oncostatin M, and vascular endothelial growth factor from macrophages

    NARCIS (Netherlands)

    Verhoeckx, K.C.M.; Doornbos, R.P.; Witkamp, R.F.; Greef, J. van der; Rodenburg, R.J.T.

    2006-01-01

    Vascular endothelial growth factor (VEGF), oncostatin M (OSM), and granulocyte chemotactic protein-2 (GCP-2/CXCL6) are up-regulated in U937 macrophages and peripheral blood macrophages exposed to LPS, beta-adrenergic receptor (β2-AR) agonists (e.g. zilpaterol, and clenbuterol) and some other agents

  9. Chemotactic Activity of Cyclophilin A in the Skin Mucus of Yellow Catfish (Pelteobagrus fulvidraco and Its Active Site for Chemotaxis

    Directory of Open Access Journals (Sweden)

    Farman Ullah Dawar

    2016-08-01

    Full Text Available Fish skin mucus is a dynamic barrier for invading pathogens with a variety of anti-microbial enzymes, including cyclophilin A (CypA, a multi-functional protein with peptidyl-prolyl cis/trans isomerase (PPIase activity. Beside various other immunological functions, CypA induces leucocytes migration in vitro in teleost. In the current study, we have discovered several novel immune-relevant proteins in yellow catfish skin mucus by mass spectrometry (MS. The CypA present among them was further detected by Western blot. Moreover, the CypA present in the skin mucus displayed strong chemotactic activity for yellow catfish leucocytes. Interestingly, asparagine (like arginine in mammals at position 69 was the critical site in yellow catfish CypA involved in leucocyte attraction. These novel efforts do not only highlight the enzymatic texture of skin mucus, but signify CypA to be targeted for anti-inflammatory therapeutics.

  10. Multiscale dynamics of biological cells with chemotactic interactions: from a discrete stochastic model to a continuous description

    CERN Document Server

    Alber, M; Glimm, T; Lushnikov, P M; Alber, Mark; Chen, Nan; Glimm, Tilmann; Lushnikov, Pavel M.

    2006-01-01

    The Cellular Potts Model (CPM) has been used for simulating various biological phenomena such as differential adhesion, fruiting body formation of the slime mold Dictyostelium discoideum, angiogenesis, cancer invasion, chondrogenesis in embryonic vertebrate limbs, and many others. In this paper, we derive continuous limit of discrete one dimensional CPM with the chemotactic interactions between cells in the form of a Fokker-Planck equation for the evolution of the cell probability density function. This equation is then reduced to the classical macroscopic Keller-Segel model. In particular, all coefficients of the Keller-Segel model are obtained from parameters of the CPM. Theoretical results are verified numerically by comparing Monte Carlo simulations for the CPM with numerics for the Keller-Segel model.

  11. Plasma Levels of Monocyte Chemotactic Protein 3 and Beta-Nerve Growth Factor Increase with Amnestic Mild Cognitive Impairment

    Institute of Scientific and Technical Information of China (English)

    Kang Soo Lee; Ji Hyung Chung; Kyung Hye Lee; Min-Jeong Shin; Byoung Hoon Oh; Soo Hyung Lee; Chang Hyung Hong

    2009-01-01

    A number of studies have investigated peripheral inflammatory indices, including plasma cytokines and related molecules according to subtypes of dementia, but not in mild cognitive impairment (MCI). In this study, we used multiplex cytokine assay to assess the plasma levels of 22 cytokines in patients with MCI subtyped as amnestic and non-amnestic, according to cognitive features. When comparing the levels of plasma growth factors, chemokines and cytokines, plasma levels of monocyte chemotactic protein 3 (MCP-3), and beta-nerve growth factor (β-NGF) in these two groups, they were found to be significantly higher in amnestic MCI patients than in non-amnestic MCI patients, after adjusting for age and gender. This suggests that plasma MCP-3 and β-NGF may be useful in differentiating subtypes of MCI. Cellular & Molecular Immunology.

  12. High Gradient Accelerator Research

    Energy Technology Data Exchange (ETDEWEB)

    Temkin, Richard [Massachusetts Inst. of Technology (MIT), Cambridge, MA (United States). Dept. of Physics. Plasma Science and Fusion Center

    2016-07-12

    The goal of the MIT program of research on high gradient acceleration is the development of advanced acceleration concepts that lead to a practical and affordable next generation linear collider at the TeV energy level. Other applications, which are more near-term, include accelerators for materials processing; medicine; defense; mining; security; and inspection. The specific goals of the MIT program are: • Pioneering theoretical research on advanced structures for high gradient acceleration, including photonic structures and metamaterial structures; evaluation of the wakefields in these advanced structures • Experimental research to demonstrate the properties of advanced structures both in low-power microwave cold test and high-power, high-gradient test at megawatt power levels • Experimental research on microwave breakdown at high gradient including studies of breakdown phenomena induced by RF electric fields and RF magnetic fields; development of new diagnostics of the breakdown process • Theoretical research on the physics and engineering features of RF vacuum breakdown • Maintaining and improving the Haimson / MIT 17 GHz accelerator, the highest frequency operational accelerator in the world, a unique facility for accelerator research • Providing the Haimson / MIT 17 GHz accelerator facility as a facility for outside users • Active participation in the US DOE program of High Gradient Collaboration, including joint work with SLAC and with Los Alamos National Laboratory; participation of MIT students in research at the national laboratories • Training the next generation of Ph. D. students in the field of accelerator physics.

  13. High Gradient Accelerator Research

    Energy Technology Data Exchange (ETDEWEB)

    Temkin, Richard [Massachusetts Inst. of Technology (MIT), Cambridge, MA (United States). Dept. of Physics. Plasma Science and Fusion Center

    2016-07-12

    The goal of the MIT program of research on high gradient acceleration is the development of advanced acceleration concepts that lead to a practical and affordable next generation linear collider at the TeV energy level. Other applications, which are more near-term, include accelerators for materials processing; medicine; defense; mining; security; and inspection. The specific goals of the MIT program are: • Pioneering theoretical research on advanced structures for high gradient acceleration, including photonic structures and metamaterial structures; evaluation of the wakefields in these advanced structures • Experimental research to demonstrate the properties of advanced structures both in low power microwave cold test and high power, high gradient test at megawatt power levels • Experimental research on microwave breakdown at high gradient including studies of breakdown phenomena induced by RF electric fields and RF magnetic fields; development of new diagnostics of the breakdown process • Theoretical research on the physics and engineering features of RF vacuum breakdown • Maintaining and improving the Haimson / MIT 17 GHz accelerator, the highest frequency operational accelerator in the world, a unique facility for accelerator research • Providing the Haimson / MIT 17 GHz accelerator facility as a facility for outside users • Active participation in the US DOE program of High Gradient Collaboration, including joint work with SLAC and with Los Alamos National Laboratory; participation of MIT students in research at the national laboratories • Training the next generation of Ph. D. students in the field of accelerator physics.

  14. The release of eosinophil chemotactic activity and eosinophil chemokinesis inhibitory activity by mononuclear cells from atopic asthmatic and non-atopic subjects

    Directory of Open Access Journals (Sweden)

    J. Grzegorczyk

    2000-01-01

    Full Text Available The goal of our study was to assess the chemotactic activity for eosinophils (ECA and neutrophils (NCA and histamine releasing activity (HRA in crude supernatants of mononuclear cells in monosensitized atopic asthmatics and healthy controls. Chemotactic activity for ECA and neutrophils was measured in supernatants of cultured mononuclear cells with modified Boyden’s chamber and HRA was assessed on healthy donor basophils. With respect to ECA generation two distinct subgroups of subjects were distinguished: releasers [ECA (+] and non-releasers [ECA (–]. In atopic and non-atopic ECA (+ the mean ECA index was 3.78 ± 0.49 and 2.47 ± 0.27 respectively (P > 0.05. Supernatants from the remaining subjects (seven of 22 atopic and five of 11 non-atopic did not express ECA, but revealed significant inhibitory activity for chemokinesis of eosinophils (mean chemotactic index 0.25 ± 0.16 and 0.48 ± 0.22 for atopic and non-atopic non-releasers respectively. Stimulation with antigen of MNC from atopic and with PHA from non-atopic ECA (– restored cells ability to release ECA. Sephadex gel chromatography revealed that supernatants of MNC contained chemotactic and chemokinesis inhibitory activity in different fractions. The spontaneous productions of NCA and HRA by mononuclear cells was sim ilar in ECA releasers and non-releasers, although the HRA was higher following stimulation with PHA in the non-atopic ECA (+ subgroup. Our study demonstrated, for the first time, that MNC are capable of generating not only chemotactic activity but also chemokinesis inhibitory activity for eosinophils.

  15. Uniform gradient expansions

    Energy Technology Data Exchange (ETDEWEB)

    Giovannini, Massimo, E-mail: massimo.giovannini@cern.ch [Department of Physics, Theory Division, CERN, 1211 Geneva 23 (Switzerland); INFN, Section of Milan-Bicocca, 20126 Milan (Italy)

    2015-06-30

    Cosmological singularities are often discussed by means of a gradient expansion that can also describe, during a quasi-de Sitter phase, the progressive suppression of curvature inhomogeneities. While the inflationary event horizon is being formed the two mentioned regimes coexist and a uniform expansion can be conceived and applied to the evolution of spatial gradients across the protoinflationary boundary. It is argued that conventional arguments addressing the preinflationary initial conditions are necessary but generally not sufficient to guarantee a homogeneous onset of the conventional inflationary stage.

  16. Learning gradients on manifolds

    CERN Document Server

    Mukherjee, Sayan; Zhou, Ding-Xuan; 10.3150/09-BEJ206

    2010-01-01

    A common belief in high-dimensional data analysis is that data are concentrated on a low-dimensional manifold. This motivates simultaneous dimension reduction and regression on manifolds. We provide an algorithm for learning gradients on manifolds for dimension reduction for high-dimensional data with few observations. We obtain generalization error bounds for the gradient estimates and show that the convergence rate depends on the intrinsic dimension of the manifold and not on the dimension of the ambient space. We illustrate the efficacy of this approach empirically on simulated and real data and compare the method to other dimension reduction procedures.

  17. Manipulating the Gradient

    Science.gov (United States)

    Gaze, Eric C.

    2005-01-01

    We introduce a cooperative learning, group lab for a Calculus III course to facilitate comprehension of the gradient vector and directional derivative concepts. The lab is a hands-on experience allowing students to manipulate a tangent plane and empirically measure the effect of partial derivatives on the direction of optimal ascent. (Contains 7…

  18. Cloning, bacterial expression and biological characterization of recombinant human granulocyte chemotactic protein-2 and differential expression of granulocyte chemotactic protein-2 and epithelial cell-derived neutrophil activating peptide-78 mRNAs.

    Science.gov (United States)

    Froyen, G; Proost, P; Ronsse, I; Mitera, T; Haelens, A; Wuyts, A; Opdenakker, G; Van Damme, J; Billiau, A

    1997-02-01

    Human osteosarcoma cells secrete a novel C-X-C chemokine called granulocyte chemotactic protein-2 (GCP-2), which was previously identified by amino acid sequencing of the purified natural protein. In order to understand the role of this new protein in inflammatory reactions, we cloned GCP-2 DNA sequences to generate recombinant protein and specific DNA probes and primers. By means of PCR on cloned cDNA of osteosarcoma cells induced by interleukin-1 beta and fibroblasts induced by lipopolysaccharide plus dsRNA, the complete coding domain of GCP-2 was isolated. This sequence was cloned into the bacterial expression vector pHEN1 and, after induction, GCP-2 was secreted into the periplasm of Escherichia coli. Recombinant GCP-2 (rGCP-2) was purified and characterized by SDS/PAGE as a monomeric 6.5-kDa protein and by amino-terminal sequencing. The chemoattractive potency of GCP-2 for neutrophilic granulocytes was about 10-times less than that of interleukin-8 and the minimal effective dose was 10 ng/ml. However, at optimal dose (100 ng/ml) the maximal chemotactic response was comparable with that of interleukin-8. Both characteristics correspond with those of natural GCP-2. In addition, intracellular calcium release in neutrophils by recombinant GCP-2 was achieved with as little as 10 ng/ml. Quantitation studies using reverse transcriptase and the polymerase chain reaction revealed higher GCP-2 mRNA production in normal fibroblasts than in tumor cells. When compared with epithelial-cell-derived neutrophil-activating peptide-78 (ENA-78) mRNA, the GCP-2 mRNA levels were higher in all cell lines tested. In addition, GCP-2 and ENA-78 expression seem to be differentially regulated in that phorbol ester and lipopolysaccharide have opposing effects on their mRNA induction in diploid fibroblasts and epithelial cells, respectively. Interleukin-1 was demonstrated to be a general inducer for both chemokines, while interferon-gamma down-regulates their mRNA expression. The

  19. Energy in density gradient

    OpenAIRE

    Vranjes, J.; Kono, M

    2015-01-01

    Inhomogeneous plasmas and fluids contain energy stored in inhomogeneity and they naturally tend to relax into lower energy states by developing instabilities or by diffusion. But the actual amount of energy in such inhomogeneities has remained unknown. In the present work the amount of energy stored in a density gradient is calculated for several specific density profiles in a cylindric configuration. This is of practical importance for drift wave instability in various plasmas, and in partic...

  20. Increasing SLEDed Linac Gradient

    Energy Technology Data Exchange (ETDEWEB)

    Farkas, Zoltan D

    2001-11-08

    This note will show how to increase the SLED [1] gradient by varying Q{sub e}, the external Q of the SLED cavity, by increasing its Q{sub 0} and by increasing the compression ratio. If varying the external Q is to be effective, then the copper losses should be small so that Q{sub 0} >> Q{sub e}. Methods of varying Q{sub e} will be indicated but no experimental data will be presented. If we increase the klystron pulse width from 3.5 to 5 {micro}S and increase Q{sub 0} from the present 100000 to 300000, then the gradient increases by 19% and the beam energy increases from 50 to 60 GeV. This note will also discuss SLED operation at 11424 MHz, the NLC frequency. Without Q{sub e} switching, using SLED at 11424 MHz increases the SLAC gradient from 21 MV/m to 34 MV/m, and at the same repetition rate, uses about 1/5 of rf average power. If we also double the compression ratio, we reach 47 MV/m and over 100 GeV beam energy.

  1. Using optical tweezers to examine the chemotactic force to a single inflammatory cell--eosinophil stimulated by chemoattractants prepared from Toxocara Canis larvae

    Science.gov (United States)

    Shih, Po-Chen; Su, Yi-Jr; Chen, Ke-Min; Jen, Lin-Ni; Liu, Cheng-tzu; Hsu, Long

    2005-08-01

    Granulocytes are a group of white blood cells belonging to the innate immune system in human and in murine in which eosinophils play an important role in worm infection-induced inflammation. The migration of these cells is well characterized and has been separated into four steps: rolling, adhesion, transendothelial migration, and chemotaxis, however, the physical characteristics of the chemotactic force to eosinophils from worm component remain largely unknown. Note that optical tweezers are featured in the manipulation of a single cell and the measurement of biological forces. Therefore, we propose to use optical tweezers to examine the chemotactic force to a eosinophil from a T. canis lavae preparation in terms of distance during the migration of eosinophil.

  2. Reinforcement Learning by Value Gradients

    CERN Document Server

    Fairbank, Michael

    2008-01-01

    The concept of the value-gradient is introduced and developed in the context of reinforcement learning. It is shown that by learning the value-gradients exploration or stochastic behaviour is no longer needed to find locally optimal trajectories. This is the main motivation for using value-gradients, and it is argued that learning value-gradients is the actual objective of any value-function learning algorithm for control problems. It is also argued that learning value-gradients is significantly more efficient than learning just the values, and this argument is supported in experiments by efficiency gains of several orders of magnitude, in several problem domains. Once value-gradients are introduced into learning, several analyses become possible. For example, a surprising equivalence between a value-gradient learning algorithm and a policy-gradient learning algorithm is proven, and this provides a robust convergence proof for control problems using a value function with a general function approximator.

  3. Intelectin is required for IL-13-induced monocyte chemotactic protein-1 and -3 expression in lung epithelial cells and promotes allergic airway inflammation

    OpenAIRE

    Gu, Naibing; Kang, Guannan; Jin, Chang'E; Xu, Yongjian; ZHANG, ZHENXIANG; Erle, David J.; Zhen, Guohua

    2009-01-01

    Asthma is characterized by airway inflammation, mucus overproduction, airway hyperreactivity, and peribronchial fibrosis. Intelectin has been shown to be increased in airway epithelium of asthmatics. However, the role of intelectin in the pathogenesis of asthma is unknown. Airway epithelial cells can secrete chemokines such as monocyte chemotactic protein (MCP)-1 and -3 that play crucial roles in asthmatic airway inflammation. We hypothesized that intelectin plays a role in allergic airway in...

  4. Interleukin-8 is a major neutrophil chemotactic factor derived from cultured human gingival fibroblasts stimulated with interleukin-1 beta or tumor necrosis factor alpha.

    OpenAIRE

    Takashiba, S; Takigawa, M; Takahashi, K; Myokai, F; Nishimura, F.; Chihara, T.; Kurihara, H.; Nomura, Y.; Murayama, Y.

    1992-01-01

    Inflammatory mediators produced by cells in the gingiva have been implicated in the initiation and progression of periodontal disease, a common infectious disease. In this study, we examined the biological activity of neutrophil chemotactic factors and the kinetics of expression of interleukin-8 (IL-8) mRNA derived from normal gingival fibroblasts in response to inflammatory mediators in an in vitro model. Gingival fibroblasts stimulated by either recombinant human interleukin-1 beta or recom...

  5. Plasma Levels of Monocyte Chemotactic Protein-1 Are Associated with Clinical Features and Angiogenesis in Patients with Multiple Myeloma

    Directory of Open Access Journals (Sweden)

    Toni Valković

    2016-01-01

    Full Text Available The aim of this pilot study was to determine the plasma levels of monocyte chemotactic protein-1 (MCP-1 and possible associations with angiogenesis and the main clinical features of untreated patients with multiple myeloma (MM. ELISA was used to determine plasma MCP-1 levels in 45 newly diagnosed MM patients and 24 healthy controls. The blood vessels were highlighted by immunohistochemical staining, and computer-assisted image analysis was used for more objective and accurate determination of two parameters of angiogenesis: microvessel density (MVD and total vascular area (TVA. The plasma levels of MCP-1 were compared to these parameters and the presence of anemia, renal dysfunction, and bone lesions. A significant positive correlation was found between plasma MCP-1 concentrations and TVA (p=0.02. The MCP-1 levels were significantly higher in MM patients with evident bone lesions (p=0.01, renal dysfunction (p=0.02, or anemia (p=0.04. Therefore, our preliminary results found a positive association between plasma MCP-1 levels, angiogenesis (expressed as TVA, and clinical features in patients with MM. However, additional prospective studies with a respectable number of patients should be performed to authenticate these results and establish MCP-1 as a possible target of active treatment.

  6. Stromal-derived factor-1α/CXCL12-CXCR4 chemotactic pathway promotes perineural invasion in pancreatic cancer.

    Science.gov (United States)

    Xu, Qinhong; Wang, Zheng; Chen, Xin; Duan, Wanxing; Lei, Jianjun; Zong, Liang; Li, Xuqi; Sheng, Liang; Ma, Jiguang; Han, Liang; Li, Wei; Zhang, Lun; Guo, Kun; Ma, Zhenhua; Wu, Zheng; Wu, Erxi; Ma, Qingyong

    2015-03-10

    Perineural invasion (PNI) is considered as an alternative route for the metastatic spread of pancreatic cancer cells; however, the molecular changes leading to PNI are still poorly understood. In this study, we show that the CXCL12/CXCR4 axis plays a pivotal role in the neurotropism of pancreatic cancer cells to local peripheral nerves. Immunohistochemical staining results revealed that CXCR4 elevation correlated with PNI in 78 pancreatic cancer samples. Both in vitro and in vivo PNI models were applied to investigate the function of the CXCL12/CXCR4 signaling in PNI progression and pathogenesis. The results showed that the activation of the CXCL12/CXCR4 axis significantly increased pancreatic cancer cells invasion and promoted the outgrowth of the dorsal root ganglia. CXCL12 derived from the peripheral nerves stimulated the invasion and chemotactic migration of CXCR4-positive cancer cells in a paracrine manner, eventually leading to PNI. In vivo analyses revealed that the abrogation of the activated signaling inhibited tumor growth and invasion of the sciatic nerve toward the spinal cord. These data indicate that the CXCL12/CXCR4 axis may be a novel therapeutic target to prevent the perineural dissemination of pancreatic cancer.

  7. Inhibition of chemiluminescence and chemotactic activity of phagocytes in vitro by the extracts of selected medicinal plants.

    Science.gov (United States)

    Jantan, Ibrahim; Harun, Nurul Hikmah; Septama, Abdi Wira; Murad, Shahnaz; Mesaik, M A

    2011-04-01

    The methanol extracts of 20 selected medicinal plants were investigated for their effects on the respiratory burst of human whole blood, isolated human polymorphonuclear leukocytes (PMNs) and isolated mice macrophages using a luminol/lucigenin-based chemiluminescence assay. We also tested the effect of the extracts on chemotactic migration of PMNs using the Boyden chamber technique. The extracts of Curcuma domestica L., Phyllanthus amarus Schum & Thonn and C. xanthorrhiza Roxb. were the samples producing the strongest oxidative burst of PMNs with luminol-based chemiluminescence, with IC(50) values ranging from 0.5 to 0.7 μg/ml. For macrophage cells, the extracts which showed strong suppressive activity for luminol-based chemiluminescence were C. xanthorrhiza and Garcinia mangostana L. Among the extracts studied, C. mangga Valton & Vazsjip, Piper nigrum L. and Labisia pumila var. alata showed strong inhibitory activity on lucigenin-amplified oxidative burst of PMNs, with IC(50) values ranging from 0.9 to 1.5 μg/ml. The extracts of Zingiber officinale Rosc., Alpinia galangal (L.) Willd and Averrhoa bilimbi Linn showed strong inhibition on the chemotaxic migration of cells, with IC(50) values comparable to that of ibuprofen (1.5 μg/ml). The results suggest that some of these plants were able to modulate the innate immune response of phagocytes at different steps, emphasizing their potential as a source of new immunomodulatory agents. PMID:21184195

  8. Elevated monocyte chemotactic proteins 1, 2, and 3 in pulmonary alveolar proteinosis are associated with chemokine receptor suppression.

    Science.gov (United States)

    Bonfield, Tracey L; John, Nejimol; Malur, Anagha; Barna, Barbara P; Culver, Daniel A; Kavuru, Mani S; Thomassen, Mary Jane

    2005-01-01

    Pulmonary alveolar proteinosis (PAP) is a rare autoimmune lung disease characterized by abnormal surfactant accumulation within alveolar macrophages, and circulating auto-antibodies against granulocyte-macrophage colony stimulating factor (GM-CSF) resulting in functional GM-CSF deficiency. Monocyte/macrophage chemotactic protein-1 (MCP-1) is elevated in PAP, suggesting association with the pathophysiology. Because PAP has been associated with inflammatory pulmonary changes, we hypothesized that other MCP family chemokines would be present and that Chemokine Chemotaxis Receptor 2 (CCR2) would be elevated on PAP mononuclear cells. Here we show for the first time that MCP-2 and MCP-3, like MCP-1, are highly elevated in PAP. We also confirm that PAP alveolar macrophages and not epithelial cells produce MCP-1, and that MCP-1 from PAP lung has functional chemoattractant activity. Surprisingly, CCR2 expression is diminished in PAP lymphocytes and alveolar macrophages compared to controls. Further, MCP-1 from PAP lung suppresses CCR2 expression in vitro, suggesting that in PAP, MCP-1 participates in an autocrine regulatory network in vivo. PMID:15596412

  9. Aurantio-obtusin stimulates chemotactic migration and differentiation of MC3T3-E1 osteoblast cells.

    Science.gov (United States)

    Vishnuprasad, Chethala N; Tsuchiya, Tomoko; Kanegasaki, Shiro; Kim, Joon Ho; Han, Sung Soo

    2014-05-01

    Osteoporosis is one of the major metabolic bone diseases and is among the most challenging noncommunicable diseases to treat. Although there is an increasing interest in identifying bioactive molecules for the prevention and management of osteoporosis, such studies principally focus only on differentiation and mineralization of osteoblasts or inhibition of osteoclast activity. Stimulation of osteoblast migration must be a promising osteoanabolic strategy for improved metabolic bone disease therapy. In this study, we show that an anthraquinone derivative, aurantio-obtusin, stimulated chemotactic migration of MC3T3-E1 osteoblast cells in a concentration-dependent manner. The use of a real-time chemotaxis analyzing system, TAXIScan, facilitated the evaluation of both velocity and directionality of osteoblast migration in response to the compound. Besides migration, the compound stimulated osteoblast differentiation and mineralization. Taken together, the data presented in this paper demonstrate that aurantio-obtusin is a promising osteoanabolic compound of natural origin with potential therapeutic applications in the prevention of osteoporosis and other metabolic bone diseases.

  10. Gradient equivalent crystal theory.

    Science.gov (United States)

    Zypman, F R; Ferrante, J

    2006-07-01

    This paper presents an extension of the formalism of equivalent crystal theory (ECT) by introducing an electron density gradient term so that the total model density becomes a more accurate representation of the real local density. Specifically, we allow for the electron density around a lattice site to have directionality, in addition to an average value, as assumed in ECT. We propose that an atom senses its neighbouring density as a weighted sum-the weights given by the its own electronic probability. As a benchmark, the method is used to compute vacancy migration energy curves of iron. These energies are in good agreement with previously published results. PMID:21690822

  11. Energy in density gradient

    Energy Technology Data Exchange (ETDEWEB)

    Vranjes, J., E-mail: jvranjes@yahoo.com [Instituto de Astrofísica de Canarias, 38205 La Laguna, Tenerife (Spain); Departamento de Astrofísica, Universidad de La Laguna, 38205 La Laguna, Tenerife (Spain); Kono, M., E-mail: kono@fps.chuo-u.ac.jp [Faculty of Policy Studies, Chuo University, Tokyo (Japan)

    2015-01-15

    Inhomogeneous plasmas and fluids contain energy stored in inhomogeneity and they naturally tend to relax into lower energy states by developing instabilities or by diffusion. But the actual amount of energy in such inhomogeneities has remained unknown. In the present work, the amount of energy stored in a density gradient is calculated for several specific density profiles in a cylindrical configuration. This is of practical importance for drift wave instability in various plasmas, and, in particular, in its application in models dealing with the heating of solar corona because the instability is accompanied with stochastic heating, so the energy contained in inhomogeneity is effectively transformed into heat. It is shown that even for a rather moderate increase of the density at the axis in magnetic structures in the corona by a factor 1.5 or 3, the amount of excess energy per unit volume stored in such a density gradient becomes several orders of magnitude greater than the amount of total energy losses per unit volume (per second) in quiet regions in the corona. Consequently, within the life-time of a magnetic structure such energy losses can easily be compensated by the stochastic drift wave heating.

  12. Charge gradient microscopy

    Science.gov (United States)

    Hong, Seungbum; Tong, Sheng; Park, Woon Ik; Hiranaga, Yoshiomi; Cho, Yasuo; Roelofs, Andreas

    2014-01-01

    Here we present a simple and fast method to reliably image polarization charges using charge gradient microscopy (CGM). We collected the current from the grounded CGM probe while scanning a periodically poled lithium niobate single crystal and single-crystal LiTaO3 thin film on the Cr electrode. We observed current signals at the domains and domain walls originating from the displacement current and the relocation or removal of surface charges, which enabled us to visualize the ferroelectric domains at a scan frequency above 78 Hz over 10 μm. We envision that CGM can be used in high-speed ferroelectric domain imaging and piezoelectric energy-harvesting devices. PMID:24760831

  13. Generalized conjugate gradient squared

    Energy Technology Data Exchange (ETDEWEB)

    Fokkema, D.R.; Sleijpen, G.L.G. [Utrecht Univ. (Netherlands)

    1994-12-31

    In order to solve non-symmetric linear systems of equations, the Conjugate Gradient Squared (CGS) is a well-known and widely used iterative method. In practice the method converges fast, often twice as fast as the Bi-Conjugate Gradient method. This is what you may expect, since CGS uses the square of the BiCG polynomial. However, CGS may suffer from its erratic convergence behavior. The method may diverge or the approximate solution may be inaccurate. BiCGSTAB uses the BiCG polynomial and a product of linear factors in an attempt to smoothen the convergence. In many cases, this has proven to be very effective. Unfortunately, the convergence of BiCGSTAB may stall when a linear factor (nearly) degenerates. BiCGstab({ell}) is designed to overcome this degeneration of linear factors. It generalizes BiCGSTAB and uses both the BiCG polynomial and a product of higher order factors. Still, CGS may converge faster than BiCGSTAB or BiCGstab({ell}). So instead of using a product of linear or higher order factors, it may be worthwhile to look for other polynomials. Since the BiCG polynomial is based on a three term recursion, a natural choice would be a polynomial based on another three term recursion. Possibly, a suitable choice of recursion coefficients would result in method that converges faster or as fast as CGS, but less erratic. It turns out that an algorithm for such a method can easily be formulated. One particular choice for the recursion coefficients leads to CGS. Therefore one could call this algorithm generalized CGS. Another choice for the recursion coefficients leads to BiCGSTAB. It is therefore possible to mix linear factors and some polynomial based on a three term recursion. This way one may get the best of both worlds. The authors will report on their findings.

  14. Postoperative Changes in Aqueous Monocyte Chemotactic Protein-1 Levels and Bleb Morphology after Trabeculectomy vs. Ex-PRESS Shunt Surgery.

    Directory of Open Access Journals (Sweden)

    Kohei Shobayashi

    Full Text Available To evaluate the postoperative changes in blebs and levels of aqueous monocyte chemotactic protein-1 (MCP-1 after trabeculectomy vs. Ex-PRESS tube shunt surgery.Rabbits were subjected to trabeculectomy or Ex-PRESS tube shunt surgery and observed for up to 3 months. Intraocular pressure (IOP was measured using a rebound tonometer. The MCP-1 level was measured by enzyme-linked immunosorbent assay (ELISA. Bleb morphology was evaluated using photos and anterior-segment optical coherence tomography (OCT.There were no differences in bleb appearance or IOP at any time between the groups. Bleb wall density in the anterior-segment OCT image was significantly lower 1 week after surgery in the Ex-PRESS group than the trabeculectomy group. The MCP-1 level in control eyes was 304.1 ± 45.2 pg/mL. In the trabeculectomy group, the mean aqueous MCP-1 level was 1444.9, 1914.3, 1899.8, 516.4, 398.3, 427.3, 609.5, 1612.7, 386.2, and 167.9 pg/mL at 3, 6, and 12 h, and 1, 2, 5, 7, 14, 30, and 90 days after surgery, respectively. In the Ex-PRESS group, the corresponding values were 1744.0, 1372.0, 932.5, 711.7, 396.1, 487.3, 799.5, 1327.9, 293.6, and 184.0 pg/mL. There were no significant differences in the aqueous MCP-1 level between the groups at any time point.The postoperative changes were similar in the Ex-PRESS and trabeculectomy groups, except for bleb wall density in the anterior-segment OCT image. The postoperative aqueous MCP-1 level had bimodal peaks in both groups.

  15. Monocyte chemotactic protein-1 deficiency reduces spontaneous metastasis of Lewis lung carcinoma in mice fed a high-fat diet

    Science.gov (United States)

    Yan, Lin; Sundaram, Sneha

    2016-01-01

    Adipose-produced pro-inflammatory cytokines contribute to obesity and cancer. This 2×2 experiment was designed to investigate effects of monocyte chemotactic protein-1 (MCP-1) deficiency on pulmonary metastasis of Lewis lung carcinoma (LLC) in MCP-1 deficient and wild-type mice fed a modified AIN93G diet containing 16% and 45% of energy from corn oil, respectively. The high-fat diet significantly increased the number and size (cross-sectional area and volume) of lung metastases compared to the AIN93G control diet. Deficiency in MCP-1 reduced lung metastases by 37% in high-fat diet-fed mice; it reduced metastatic cross-sectional area by 46% and volume by 69% compared to wild-type mice. Adipose and plasma concentrations of MCP-1 were significantly higher in high-fat diet-fed wild-type mice than in their AIN93G-fed counterparts; they were not detectable in MCP-1 deficient mice regardless of diet. Plasma concentrations of plasminogen activator inhibitor-1, tumor necrosis factor-α, vascular endothelial growth factor and tissue inhibitor of metalloproteinase-1 were significantly higher in MCP-1 deficient mice compared to wild-type mice. We conclude that adipose-produced MCP-1 contributes to high-fat diet-enhanced metastasis. While MCP-1 deficiency reduces metastasis, the elevation of pro-inflammatory cytokines and angiogenic factors in the absence of MCP-1 may support the metastatic development and growth of LLC in MCP-1 deficient mice. PMID:27028862

  16. Rigidity of gradient Ricci Solitons

    OpenAIRE

    Petersen, Peter; Wylie, William

    2007-01-01

    We define a gradient Ricci soliton to be rigid if it is a flat bundle $% N\\times_{\\Gamma}\\mathbb{R}^{k}$ where $N$ is Einstein. It is known that not all gradient solitons are rigid. Here we offer several natural conditions on the curvature that characterize rigid gradient solitons. Other related results on rigidity of Ricci solitons are also explained in the last section.

  17. Gradient boosting machines, a tutorial.

    Science.gov (United States)

    Natekin, Alexey; Knoll, Alois

    2013-01-01

    Gradient boosting machines are a family of powerful machine-learning techniques that have shown considerable success in a wide range of practical applications. They are highly customizable to the particular needs of the application, like being learned with respect to different loss functions. This article gives a tutorial introduction into the methodology of gradient boosting methods with a strong focus on machine learning aspects of modeling. A theoretical information is complemented with descriptive examples and illustrations which cover all the stages of the gradient boosting model design. Considerations on handling the model complexity are discussed. Three practical examples of gradient boosting applications are presented and comprehensively analyzed. PMID:24409142

  18. Gradient Boosting Machines, A Tutorial

    Directory of Open Access Journals (Sweden)

    Alexey eNatekin

    2013-12-01

    Full Text Available Gradient boosting machines are a family of powerful machine-learning techniques that have shown considerable success in a wide range of practical applications. They are highly customizable to the particular needs of the application, like being learned with respect to different loss functions. This article gives a tutorial introduction into the methodology of gradient boosting methods. A theoretical information is complemented with many descriptive examples and illustrations which cover all the stages of the gradient boosting model design. Considerations on handling the model complexity are discussed. A set of practical examples of gradient boosting applications are presented and comprehensively analyzed.

  19. Denaturing gradient gel electrophoresis

    International Nuclear Information System (INIS)

    It is worthwhile considering that only some 30 species make up the bulk of the bacterial population in human faeces at any one time based on the classical cultivation-based approach. The situation in the rumen is similar. Thus, it is practical to focus on specific groups of interest within the complex community. These may be the predominant or the most active species, specific physiological groups or readily identifiable (genetic) clusters of phylogenetically related organisms. Several 16S rDNA fingerprinting techniques can be invaluable for selecting and monitoring sequences or phylogenetic groups of interest and are described below. Over the past few decades, considerable attention was focussed on the identification of pure cultures of microbes on the basis of genetic polymorphisms of DNA encoding rRNA such as ribotyping, amplified fragment length polymorphism and randomly amplified polymorphic DNA. However, many of these methods require prior cultivation and are less suitable for use in analysis of complex mixed populations although important in describing cultivated microbial diversity in molecular terms. Much less attention was given to molecular characterization of complex communities. In particular, research into diversity and community structure over time has been revolutionized by the advent of molecular fingerprinting techniques for complex communities. Denaturing or temperature gradient gel electrophoresis (DGGE/TGGE) methods have been successfully applied to the analysis of human, pig, cattle, dog and rodent intestinal populations

  20. Effect of a short-term diet and exercise intervention on oxidative stress, inflammation, MMP-9, and monocyte chemotactic activity in men with metabolic syndrome factors.

    Science.gov (United States)

    Roberts, Christian K; Won, Dean; Pruthi, Sandeep; Kurtovic, Silvia; Sindhu, Ram K; Vaziri, Nosratola D; Barnard, R James

    2006-05-01

    The present study was designed to examine the effects of lifestyle modification on key contributing factors to atherogenesis, including oxidative stress, inflammation, chemotaxis, and cell adhesion. Obese men (n = 31), 15 of whom had metabolic syndrome, were placed on a high-fiber, low-fat diet in a 3-wk residential program where food was provided ad libitum and daily aerobic exercise was performed. In each subject, pre- and postintervention fasting blood was drawn for circulating levels of serum lipids, glucose and insulin (for estimation of insulin sensitivity), oxidative stress-generating enzyme myeloperoxidase and marker 8-isoprostaglandin F2alpha, the inflammatory protein C-reactive protein, soluble ICAM-1 as an indicator of endothelial activation, sP-selectin as a marker of platelet activation, the chemokine macrophage inflammatory protein-1alpha, and total matrix metalloproteinase-9. Using subject sera and human aortic endothelial cell culture systems, we measured VCAM-1 cell surface abundance and monocyte chemotactic protein-1, nitric oxide, superoxide, and hydrogen peroxide production in vitro by fluorometric detection. Also determined in vitro was serum-induced, monocyte adhesion and monocyte chemotactic activity. After 3 wk, significant reductions (P fasting glucose, insulin, homeostasis model assessment for insulin resistance, myeloperoxidase, 8-isoprostaglandin F2alpha, C-reactive protein, soluble ICAM-1, soluble P-selectin, macrophage inflammatory protein-1alpha, and matrix metalloproteinase-9 were noted. In vitro, serum-stimulated cellular VCAM-1 expression, monocyte chemotactic protein-1 production, and fluorometric detection of superoxide and hydrogen peroxide production decreased, whereas a concomitant increase in NO production was noted (all P < 0.01). Additionally, both monocyte adhesion (P < 0.05) and MCA (P < 0.01) decreased. Nine of 15 were no longer positive for metabolic syndrome postintervention. Intensive lifestyle modification may

  1. Rabbit neutrophil chemotactic protein (NCP) activates both CXCR1 and CXCR2 and is the functional homologue for human CXCL6.

    Science.gov (United States)

    Catusse, Julie; Struyf, Sofie; Wuyts, Anja; Weyler, Myke; Loos, Tamara; Gijsbers, Klara; Gouwy, Mieke; Proost, Paul; Van Damme, Jo

    2004-11-15

    Neutrophil chemotactic protein (NCP) is a rabbit CXC chemokine with activating and chemotactic properties on neutrophilic granulocytes. Although its selective activity on neutrophils is demonstrated, its interactions with specific chemokine receptors are not defined. For further functional characterization, NCP was chemically synthesized and was found to be equipotent as natural NCP in neutrophil chemotaxis. To identify its human homologue, we separately expressed two potential rabbit NCP receptors (CXCR1 and CXCR2) in Jurkat cells. Pure synthetic NCP was equally efficient to promote chemotaxis through either rabbit CXCR1 or CXCR2. Moreover, chemotaxis assays on rabbit CXCR1 and CXCR2 transfectants showed that NCP uses the same receptors as interleukin-8 (IL-8), a major rabbit CXC chemokine, but not rabbit GROalpha, which only recognized CXCR2. In addition, specific inhibitors for CXCR1 or CXCR2 reduced rabbit neutrophil chemotaxis induced by NCP and rabbit IL-8. Furthermore, NCP and the structurally related human CXCR1/CXCR2 agonist CXCL6/GCP-2 (granulocyte chemotactic protein-2) cross-desensitized each other in intracellular calcium release assays on human neutrophils, further indicating that both chemokines share the same receptors. The inflammatory role of NCP was also evidenced by its potent granulocytosis inducing capacity in rabbits upon systemic administration. This study provides in vitro and in vivo evidences that NCP is the functional rabbit homologue for human CXCL6/GCP-2 rather than the most related CXCR2 agonist CXCL5/ENA-78 (epithelial cell-derived neutrophil activating peptide-78). It is concluded that the rabbit is a better model to study human neutrophil activation compared to mice, which lack CXCL8/IL-8.

  2. Electric field gradients in metals

    International Nuclear Information System (INIS)

    A review of the recent works on electric field gradient in metals is given. The main emphasis is put on the temperature dependence of the electric field gradient in nonmagnetic metals. Some methods of investigation of this effect using nuclear probes are described. One of them is nuclear accoustic resonance method. (S.B.)

  3. A diffusion based long-range and steady chemical gradient generator on a microfluidic device for studying bacterial chemotaxis

    Science.gov (United States)

    Murugesan, Nithya; Singha, Siddhartha; Panda, Tapobrata; Das, Sarit K.

    2016-03-01

    Studies on chemotaxis in microfluidics device have become a major area of research to generate physiologically similar environment in vitro. In this work, a novel micro-fluidic device has been developed to study chemo-taxis of cells in near physiological condition which can create controllable, steady and long-range chemical gradients using various chemo-effectors in a micro-channel. Hydrogels like agarose, collagen, etc, can be used in the device to maintain exclusive diffusive flux of various chemical species into the micro-channel under study. Variations of concentrations and flow rates of Texas Red dextran in the device revealed that an increase in the concentration of the dye in the feed from 6 to 18 μg ml-1, causes a steeper chemical gradient in the device, whereas the flow rate of the dye has practically no effect on the chemical gradient in the device. This observation confirms that a diffusion controlled chemical gradient is generated in the micro-channel. Chemo-taxis of E. coli cells were studied under the steady gradient of a chemo-attractant and a chemo-repellent separately in the same chemical gradient generator. For sorbitol and NiSO4·6H2O, the bacterial cells exhibit a steady distribution in the micro channel after 1 h and 30 min, respectively. From the distribution of bacterial population chemo-tactic strength of the chemo-effectors was estimated for E. coli. In a long microfluidic channel, migration behavior of bacterial cells under diffusion controlled chemical gradient showed chemotaxis, random movement, aggregation, and concentration dependent reverse chemotaxis.

  4. Monocyte chemotactic protein 1 increases homing of mesenchymal stem cell to injured myocardium and neovascularization following myocardial infarction

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Objective:To investigate the effect of MCP-1 on mesenchymal stem cells(MSCs) homing to injured myocardium in a rat myocardial infarction(MI) model. Methods:Rat myocardial infarction model was established by permanent left anterior descending branch ligation. Mesenchymal stem cells from donor rats were cultured in IMDM and labeled with BrdU. The Rats were divided into two groups. Monocyte chemotactic protein 1(MCP-1) expression were measured by in situ hybridization and immunohistochemistry in the sham operated or infarcted hearts at 1,2, 4,7,14 and 28 days post operation in MCP-1 detection group. The rats were injected with MCP-1, anti-MCP-1 antibody or saline 4 days after myocardial infarction in intervention group. Then, a total of 5 × 106 cells in 2.5 ml of PBS were injected through the tail vein. The number of the labeled MSCs in the infarcted hearts was counted 3 days post injection. Cardiac function and blood vessel density were assessed 28 days post injection. Results:Self-generating MCP-1 expression was increased at the first day, peaked at the 7th day and decreased thereafter post MI and remained unchanged in sham operated hearts. The MSCs enrichment in the host hearts were more abundant in the MI groups than that in the non-Mi group(P = 0.000), the MSCs enrichment in the host hearts were more abundant in the MCP-1 injected group than that in the anti-MCP-1 antibody and saline injected groups (P = 0.000). Cardiac function was improved more in MCP-1 injected group than anti-MCP-1 antibody and saline injected groups(P= 0.000). Neovascularization in MCP-1 injected group significantly increased compared with that of other groups(P = 0.000). Conclusion: Myocardial MCP-1 expression was increased only in the early phase post MI. MCP-1 may enhance MSCs homing to the injured heart and improve cardiac function by promoting neovascularization.

  5. Combining Step Gradients and Linear Gradients in Density.

    Science.gov (United States)

    Kumar, Ashok A; Walz, Jenna A; Gonidec, Mathieu; Mace, Charles R; Whitesides, George M

    2015-06-16

    Combining aqueous multiphase systems (AMPS) and magnetic levitation (MagLev) provides a method to produce hybrid gradients in apparent density. AMPS—solutions of different polymers, salts, or surfactants that spontaneously separate into immiscible but predominantly aqueous phases—offer thermodynamically stable steps in density that can be tuned by the concentration of solutes. MagLev—the levitation of diamagnetic objects in a paramagnetic fluid within a magnetic field gradient—can be arranged to provide a near-linear gradient in effective density where the height of a levitating object above the surface of the magnet corresponds to its density; the strength of the gradient in effective density can be tuned by the choice of paramagnetic salt and its concentrations and by the strength and gradient in the magnetic field. Including paramagnetic salts (e.g., MnSO4 or MnCl2) in AMPS, and placing them in a magnetic field gradient, enables their use as media for MagLev. The potential to create large steps in density with AMPS allows separations of objects across a range of densities. The gradients produced by MagLev provide resolution over a continuous range of densities. By combining these approaches, mixtures of objects with large differences in density can be separated and analyzed simultaneously. Using MagLev to add an effective gradient in density also enables tuning the range of densities captured at an interface of an AMPS by simply changing the position of the container in the magnetic field. Further, by creating AMPS in which phases have different concentrations of paramagnetic ions, the phases can provide different resolutions in density. These results suggest that combining steps in density with gradients in density can enable new classes of separations based on density. PMID:25978093

  6. Flame Propagation Through Concentration Gradient

    Institute of Scientific and Technical Information of China (English)

    JunyaIINO; MitsuakiTANABE; 等

    2000-01-01

    The experiment was carried out in homogeneous propane-air mixture and in several concentration gradient of mixture.Igniter is put on the upper side of the combustion chamber,In concentration gradient experiment.ixture was ignited from lean side.An experimental study was conducted in a combustion chamber.The combustion chamber has glass windows for optical measurements at any side.For the measurement of distribution of fuel concentration,infraed absorption method using 3.39μm He-Ne laser was used,and for the observation of proagating flams,Schlieren method was employed.As a measurment result of flame propagation velocity and flammable limit,for a mixture of an identical local equivalence ratio.flame propagation velocity in concentration gradient is faster than that in homogeneous mixture,and rich flammable limit in concentration gradient shows a tendency to be higher than that in homogeneous mixture.

  7. Long pendulums in gravitational gradients

    Energy Technology Data Exchange (ETDEWEB)

    Suits, B H [Physics Department, Michigan Technological University, Houghton, MI 49931 (United States)

    2006-03-01

    Previous results for long pendulums above a spherical Earth are generalized for arbitrary non-uniform gravitational fields in the limit of small oscillation. As is the case for the previous results, gravitational gradients are multiplied by the length of the string even though the string is assumed massless. The effect is shown to arise from the constraint on the motion imposed by the string. The significance of these results for real gradients is discussed. (letters and comments)

  8. Gradient boosting machines, a tutorial

    OpenAIRE

    Natekin, Alexey; Knoll, Alois

    2013-01-01

    Gradient boosting machines are a family of powerful machine-learning techniques that have shown considerable success in a wide range of practical applications. They are highly customizable to the particular needs of the application, like being learned with respect to different loss functions. This article gives a tutorial introduction into the methodology of gradient boosting methods with a strong focus on machine learning aspects of modeling. A theoretical information is complemented with de...

  9. Gradient Boosting Machines, A Tutorial

    OpenAIRE

    Alexey Natekin; Alois Knoll

    2013-01-01

    Gradient boosting machines are a family of powerful machine-learning techniques that have shown considerable success in a wide range of practical applications. They are highly customizable to the particular needs of the application, like being learned with respect to different loss functions. This article gives a tutorial introduction into the methodology of gradient boosting methods. A theoretical information is complemented with many descriptive examples and illustrations which cover all th...

  10. Delivery of platelet-derived growth factor as a chemotactic factor for mesenchymal stem cells by bone-mimetic electrospun scaffolds.

    Directory of Open Access Journals (Sweden)

    Matthew C Phipps

    Full Text Available The recruitment of mesenchymal stem cells (MSCs is a vital step in the bone healing process, and hence the functionalization of osteogenic biomaterials with chemotactic factors constitutes an important effort in the tissue engineering field. Previously we determined that bone-mimetic electrospun scaffolds composed of polycaprolactone, collagen I and nanohydroxyapatite (PCL/col/HA supported greater MSC adhesion, proliferation and activation of integrin-related signaling cascades than scaffolds composed of PCL or collagen I alone. In the current study we investigated the capacity of bone-mimetic scaffolds to serve as carriers for delivery of an MSC chemotactic factor. In initial studies, we compared MSC chemotaxis toward a variety of molecules including PDGF-AB, PDGF-BB, BMP2, and a mixture of the chemokines SDF-1α, CXCL16, MIP-1α, MIP-1β, and RANTES. Transwell migration assays indicated that, of these factors, PDGF-BB was the most effective in stimulating MSC migration. We next evaluated the capacity of PCL/col/HA scaffolds, compared with PCL scaffolds, to adsorb and release PDGF-BB. We found that significantly more PDGF- BB was adsorbed to, and subsequently released from, PCL/col/HA scaffolds, with sustained release extending over an 8-week interval. The PDGF-BB released was chemotactically active in transwell migration assays, indicating that bioactivity was not diminished by adsorption to the biomaterial. Complementing these studies, we developed a new type of migration assay in which the PDGF-BB-coated bone-mimetic substrates were placed 1.5 cm away from the cell migration front. These experiments confirmed the ability of PDGF-BB-coated PCL/col/HA scaffolds to induce significant MSC chemotaxis under more stringent conditions than standard types of migration assays. Our collective results substantiate the efficacy of PDGF-BB in stimulating MSC recruitment, and further show that the incorporation of native bone molecules, collagen I and nano

  11. The influence of ALN-Al gradient material gradient index on ballistic performance

    International Nuclear Information System (INIS)

    Ballistic performance of the gradient material is superior to laminated material, and gradient materials have different gradient types. Using ls-dyna to simulate the ballistic performance of ALN-AL gradient target plates which contain three gradient index (b = 1, b = 0.5, b = 2). Through Hopkinson bar numerical simulation to the target plate materials, we obtained the reflection stress wave and transmission stress wave state of gradient material to get the best gradient index. The internal stress state of gradient material is simulated by amplification processing of the target plate model. When the gradient index b is equal to 1, the gradient target plate is best of all.

  12. Gradient expansion for anisotropic hydrodynamics

    CERN Document Server

    Florkowski, Wojciech; Spaliński, Michał

    2016-01-01

    We compute the gradient expansion for anisotropic hydrodynamics. The results are compared with the corresponding expansion of the underlying kinetic-theory model with the collision term treated in the relaxation time approximation. We find that a recent formulation of anisotropic hydrodynamics based on an anisotropic matching principle yields the first three terms of the gradient expansion in agreement with those obtained for the kinetic theory. This gives further support for this particular hydrodynamic model as a good approximation of the kinetic-theory approach. We further find that the gradient expansion of anisotropic hydrodynamics is an asymptotic series, and the singularities of the analytic continuation of its Borel transform indicate the presence of non-hydrodynamic modes.

  13. Gradient Domain Guided Image Filtering.

    Science.gov (United States)

    Kou, Fei; Chen, Weihai; Wen, Changyun; Li, Zhengguo

    2015-11-01

    Guided image filter (GIF) is a well-known local filter for its edge-preserving property and low computational complexity. Unfortunately, the GIF may suffer from halo artifacts, because the local linear model used in the GIF cannot represent the image well near some edges. In this paper, a gradient domain GIF is proposed by incorporating an explicit first-order edge-aware constraint. The edge-aware constraint makes edges be preserved better. To illustrate the efficiency of the proposed filter, the proposed gradient domain GIF is applied for single-image detail enhancement, tone mapping of high dynamic range images and image saliency detection. Both theoretical analysis and experimental results prove that the proposed gradient domain GIF can produce better resultant images, especially near the edges, where halos appear in the original GIF. PMID:26285153

  14. Bond Growth under Temperature Gradient.

    Directory of Open Access Journals (Sweden)

    P.K. Satyawali

    1999-12-01

    Full Text Available Grain and bond growth for dry snow are determined by the distribution of temperature andtemperature gradient in the snow matrix. From the standpoint of particle approach and based oncubic packing structure, a bond growth model has been developed for TG metamorphism. The paper.highlights the importance of bond formation and its effect on snow viscosity and finally on the rateof settlement. This is very important for developing a numerical snow pack model if microstructureis considered to be a basic parameter. A few experiments have been carried out to validate bond formation under temperature gradient.

  15. On gradient Ricci solitons with Symmetry

    OpenAIRE

    Petersen, Peter; Wylie, William

    2007-01-01

    We study gradient Ricci solitons with maximal symmetry. First we show that there are no non-trivial homogeneous gradient Ricci solitons. Thus the most symmetry one can expect is an isometric cohomogeneity one group action. Many examples of cohomogeneity one gradient solitons have been constructed. However, we apply the main result in our paper "Rigidity of gradient Ricci solitons" to show that there are no noncompact cohomogeneity one shrinking gradient solitons with nonnegative curvature.

  16. Compositional gradients in Gramineae genes

    DEFF Research Database (Denmark)

    Wong, Gane Ka-Shu; Wang, Jun; Tao, Lin;

    2002-01-01

    In this study, we describe a property of Gramineae genes, and perhaps all monocot genes, that is not observed in eudicot genes. Along the direction of transcription, beginning at the junction of the 5'-UTR and the coding region, there are gradients in GC content, codon usage, and amino-acid usage...

  17. The geomagnetic field gradient tensor

    DEFF Research Database (Denmark)

    Kotsiaros, Stavros; Olsen, Nils

    2012-01-01

    We develop the general mathematical basis for space magnetic gradiometry in spherical coordinates. The magnetic gradient tensor is a second rank tensor consisting of 3 × 3 = 9 spatial derivatives. Since the geomagnetic field vector B is always solenoidal (∇ · B = 0) there are only eight independe...... of the small-scale structure of the Earth’s lithospheric field....

  18. Sintered composite gradient tool materials

    OpenAIRE

    J. Mikuła; G. Matula; K. Gołombek; L.A. Dobrzański

    2008-01-01

    Purpose: Development of a new generation of the composite gradient tool materials with the core sintered withthe matrix obtained using the powder metallurgy of the chemical composition corresponding to the HS6-5-2 highspeedsteel reinforced with the WC and TiC type hard carbide phases with the growing portions of these phases inthe outward direction from the core to the surface.Design/methodology/approach: Powder Metallurgy, SEM, X-Ray Microanalysis.Findings: Powder metallurgy processes were u...

  19. Smooth Optimization with Approximate Gradient

    OpenAIRE

    d'Aspremont, Alexandre

    2005-01-01

    We show that the optimal complexity of Nesterov's smooth first-order optimization algorithm is preserved when the gradient is only computed up to a small, uniformly bounded error. In applications of this method to semidefinite programs, this means in some instances computing only a few leading eigenvalues of the current iterate instead of a full matrix exponential, which significantly reduces the method's computational cost. This also allows sparse problems to be solved efficiently using spar...

  20. Multilayer coating for high gradients

    CERN Document Server

    Kubo, Takayuki

    2016-01-01

    The multilayer coating for high gradients is reviewed. Not only the S-I-S structure, but also the S-S bilayer structure are also treated. This is an incomplete manuscript of an invited article which will be submitted to a journal. I have uploaded this version in order to help the understanding on my talk at the TESLA Technology Collaboration meeting at Saclay, France.

  1. Microfluidic study of the chemotactic response of Escherichia coli to amino acids, signaling molecules and secondary metabolites.

    Science.gov (United States)

    Nagy, Krisztina; Sipos, Orsolya; Valkai, Sándor; Gombai, Éva; Hodula, Orsolya; Kerényi, Ádám; Ormos, Pál; Galajda, Péter

    2015-07-01

    Quorum sensing and chemotaxis both affect bacterial behavior on the population level. Chemotaxis shapes the spatial distribution of cells, while quorum sensing realizes a cell-density dependent gene regulation. An interesting question is if these mechanisms interact on some level: Does quorum sensing, a density dependent process, affect cell density itself via chemotaxis? Since quorum sensing often spans across species, such a feedback mechanism may also exist between multiple species. We constructed a microfluidic platform to study these questions. A flow-free, stable linear chemical gradient is formed in our device within a few minutes that makes it suitable for sensitive testing of chemoeffectors: we showed that the amino acid lysine is a weak chemoattractant for Escherichia coli, while arginine is neutral. We studied the effect of quorum sensing signal molecules of Pseudomonas aeruginosa on E. coli chemotaxis. Our results show that N-(3-oxododecanoyl)-homoserine lactone (oxo-C12-HSL) and N-(butryl)-homoserine lactone (C4-HSL) are attractants. Furthermore, we tested the chemoeffector potential of pyocyanin and pyoverdine, secondary metabolites under a quorum sensing control. Pyocyanin is proved to be a weak attractant while pyoverdine are repellent. We demonstrated the usability of the device in co-culturing experiments, where we showed that various factors released by P. aeruginosa affect the dynamic spatial rearrangement of a neighboring E. coli population, while surface adhesion of the cells is also modulated. PMID:26339306

  2. Precision sensing by two opposing gradient sensors: how does Escherichia coli find its preferred pH level?

    Science.gov (United States)

    Hu, Bo; Tu, Yuhai

    2013-07-01

    It is essential for bacteria to find optimal conditions for their growth and survival. The optimal levels of certain environmental factors (such as pH and temperature) often correspond to some intermediate points of the respective gradients. This requires the ability of bacteria to navigate from both directions toward the optimum location and is distinct from the conventional unidirectional chemotactic strategy. Remarkably, Escherichia coli cells can perform such a precision sensing task in pH taxis by using the same chemotaxis machinery, but with opposite pH responses from two different chemoreceptors (Tar and Tsr). To understand bacterial pH sensing, we developed an Ising-type model for a mixed cluster of opposing receptors based on the push-pull mechanism. Our model can quantitatively explain experimental observations in pH taxis for various mutants and wild-type cells. We show how the preferred pH level depends on the relative abundance of the competing sensors and how the sensory activity regulates the behavioral response. Our model allows us to make quantitative predictions on signal integration of pH and chemoattractant stimuli. Our study reveals two general conditions and a robust push-pull scheme for precision sensing, which should be applicable in other adaptive sensory systems with opposing gradient sensors.

  3. On the structure of gradient Yamabe solitons

    CERN Document Server

    Cao, Huai-Dong; Zhang, Yingying

    2011-01-01

    We show that every complete nontrivial gradient Yamabe soliton admits a special global warped product structure with a one-dimensional base. Based on this, we prove a general classification theorem for complete nontrivial locally conformally flat gradient Yamabe solitons.

  4. Light scattering from suspensions under external gradients

    OpenAIRE

    Bonet i Avalos, Josep; Rubí Capaceti, José Miguel; Rodríguez, R.; Pérez Madrid, Agustín

    1990-01-01

    We analyze the light-scattering spectrum of a suspension in a viscoelastic fluid under density and velocity gradients. When a density gradient is present, the dynamic structure factor exhibits universality in the sense that its expression depends only on the reduced frequency and the reduced density gradient. For a velocity gradient, however, the universality breaks down. In this last case we have found a transition point from one to three characteristic frequencies in the spectrum, which is ...

  5. Gradient Flow Convolutive Blind Source Separation

    DEFF Research Database (Denmark)

    Pedersen, Michael Syskind; Nielsen, Chinton Møller

    2004-01-01

    Experiments have shown that the performance of instantaneous gradient flow beamforming by Cauwenberghs et al. is reduced significantly in reverberant conditions. By expanding the gradient flow principle to convolutive mixtures, separation in a reverberant environment is possible. By use of a circ......Experiments have shown that the performance of instantaneous gradient flow beamforming by Cauwenberghs et al. is reduced significantly in reverberant conditions. By expanding the gradient flow principle to convolutive mixtures, separation in a reverberant environment is possible. By use...

  6. Community and ecosystem responses to elevational gradients

    DEFF Research Database (Denmark)

    Sundqvist, Maja K.; Sanders, Nate; Wardle, David A.

    2013-01-01

    Community structure and ecosystem processes often vary along elevational gradients. Their responses to elevation are commonly driven by changes in temperature, and many community- and ecosystem-level variables therefore frequently respond similarly to elevation across contrasting gradients. There...... using elevational gradients for understanding community and ecosystem responses to global climate change at much larger spatial and temporal scales than is possible through conventional ecological experiments. However, future studies that integrate elevational gradient approaches with experimental...

  7. An education gradient in health, a health gradient in education, or a confounded gradient in both?

    Science.gov (United States)

    Lynch, Jamie L; von Hippel, Paul T

    2016-04-01

    There is a positive gradient associating educational attainment with health, yet the explanation for this gradient is not clear. Does higher education improve health (causation)? Do the healthy become highly educated (selection)? Or do good health and high educational attainment both result from advantages established early in the life course (confounding)? This study evaluates these competing explanations by tracking changes in educational attainment and Self-rated Health (SRH) from age 15 to age 31 in the National Longitudinal Study of Youth, 1997 cohort. Ordinal logistic regression confirms that high-SRH adolescents are more likely to become highly educated. This is partly because adolescent SRH is associated with early advantages including adolescents' academic performance, college plans, and family background (confounding); however, net of these confounders adolescent SRH still predicts adult educational attainment (selection). Fixed-effects longitudinal regression shows that educational attainment has little causal effect on SRH at age 31. Completion of a high school diploma or associate's degree has no effect on SRH, while completion of a bachelor's or graduate degree have effects that, though significant, are quite small (less than 0.1 points on a 5-point scale). While it is possible that educational attainment would have greater effect on health at older ages, at age 31 what we see is a health gradient in education, shaped primarily by selection and confounding rather than by a causal effect of education on health.

  8. Second order gradient ascent pulse engineering

    CERN Document Server

    de Fouquieres, P; Glaser, S J; Kuprov, Ilya

    2011-01-01

    We report some improvements to the gradient ascent pulse engineering (GRAPE) algorithm for optimal control of quantum systems. These include more accurate gradients, convergence acceleration using the BFGS quasi-Newton algorithm as well as faster control derivative calculation algorithms. In all test systems, the wall clock time and the convergence rates show a considerable improvement over the approximate gradient ascent.

  9. On the classification of gradient Ricci solitons

    OpenAIRE

    Petersen, Peter; Wylie, William

    2007-01-01

    We show that the only complete shrinking gradient Ricci solitons with vanishing Weyl tensor are quotients of the standard ones. This gives a new proof of the Hamilton-Ivey-Perel'man classification of 3-dimensional shrinking gradient solitons. We also prove a classification for expanding gradient Ricci solitons with constant scalar curvature and suitably decaying Weyl tensor.

  10. Osteopontin, a chemotactic protein with cytokine-like properties, is up-regulated in muscle injury caused by Bothrops lanceolatus (fer-de-lance) snake venom.

    Science.gov (United States)

    Barbosa-Souza, Valéria; Contin, Daniel Kiss; Filho, Waldemar Bonventi; de Araújo, Albetiza Lôbo; Irazusta, Silvia Pierre; da Cruz-Höfling, Maria Alice

    2011-10-01

    Osteopontin (OPN) is a chemotactic, adhesive protein whose receptors include some integrins and matrix proteins known to have role in inflammatory and repair processes. We examined the time course of OPN expression at acute and chronic stages after intramuscular injection of Bothrops lanceolatus venom in rats. Additionally, we examined the expression of CD68 (a marker for phagocytic macrophages) and the myogenic factors, myoD and myogenin. There was a biphasic upregulation of OPN (6-48 h and 3-14 days post-venom), i.e., during acute inflammation and myogenic cell proliferation and differentiation phases. OPN was detected in CD68 + macrophages, fibroblasts, normal and damaged myofibers, myoblasts and myotubes. Myogenin was expressed in the cytoplasm (atypical pattern) and nucleus of myoblasts and myotubes from 18 h to 7 days, after which it was expressed only in nuclei. Macrophage numbers, OPN and myogenin expression were still elevated at 7, 14 and 7 days. At 3 days, when OPN achieved the peak, some clusters of myoblasts were within regions of intense collagen deposition. Fibrosis may represent limitation for repairing processes and may explain the small diameter of regenerated fibers at 21 days post-venom. The expression of OPN in the course of venom-induced damage and regeneration suggests stages-specific mediation role along the whole process. PMID:21839764

  11. NIF optics phase gradient specfication

    Energy Technology Data Exchange (ETDEWEB)

    Williams, W.; Auerbach, J.; Hunt, J.; Lawson, L.; Manes, K.; Orth, C.; Sacks, R.; Trenholme, J.; Wegner, P.

    1997-05-02

    A root-mean-square (rms) phase gradient specification seems to allow a good connection between the NIP optics quality and focal spot requirements. Measurements on Beamlet optics individually, and as a chain, indicate they meet the assumptions necessary to use this specification, and that they have a typical rms phase gradient of {approximately}80 {angstrom}/cm. This may be sufficient for NIP to meet the proposed Stockpile Stewardship Management Program (SSMP) requirements of 80% of a high- power beam within a 200-250 micron diameter spot. Uncertainties include, especially, the scale length of the optics phase noise, the ability of the adaptive optic to correct against pump-induced distortions and optics noise, and the possibility of finding mitigation techniques against whole-beam self-focusing (e.g. a pre- correction optic). Further work is needed in these areas to better determine the NIF specifications. This memo is a written summary of a presentation on this topic given by W. Williams 24 April 1997 to NIP and LS&T personnel.

  12. Strain gradient effects on cyclic plasticity

    DEFF Research Database (Denmark)

    Niordson, Christian Frithiof; Legarth, Brian Nyvang

    2010-01-01

    Size effects on the cyclic shear response are studied numerically using a recent higher order strain gradient visco-plasticity theory accounting for both dissipative and energetic gradient hardening. Numerical investigations of the response under cyclic pure shear and shear of a finite slab between...... rigid platens have been carried out, using the finite element method. It is shown for elastic–perfectly plastic solids how dissipative gradient effects lead to increased yield strength, whereas energetic gradient contributions lead to increased hardening as well as a Bauschinger effect. For linearly...... hardening materials it is quantified how dissipative and energetic gradient effects promote hardening above that of conventional predictions. Usually, increased hardening is attributed to energetic gradient effects, but here it is found that also dissipative gradient effects lead to additional hardening in...

  13. Oxygen Tension and Riboflavin Gradients Cooperatively Regulate the Migration of Shewanella oneidensis MR-1 Revealed by a Hydrogel-Based Microfluidic Device

    Science.gov (United States)

    Kim, Beum Jun; Chu, Injun; Jusuf, Sebastian; Kuo, Tiffany; TerAvest, Michaela A.; Angenent, Largus T.; Wu, Mingming

    2016-01-01

    Shewanella oneidensis is a model bacterial strain for studies of bioelectrochemical systems (BESs). It has two extracellular electron transfer pathways: (1) shuttling electrons via an excreted mediator riboflavin; and (2) direct contact between the c-type cytochromes at the cell membrane and the electrode. Despite the extensive use of S. oneidensis in BESs such as microbial fuel cells and biosensors, many basic microbiology questions about S. oneidensis in the context of BES remain unanswered. Here, we present studies of motility and chemotaxis of S. oneidensis under well controlled concentration gradients of two electron acceptors, oxygen and oxidized form of riboflavin (flavin+), using a newly developed microfluidic platform. Experimental results demonstrate that either oxygen or flavin+ is a chemoattractant to S. oneidensis. The chemotactic tendency of S. oneidensis in a flavin+ concentration gradient is significantly enhanced in an anaerobic in contrast to an aerobic condition. Furthermore, either a low oxygen tension or a high flavin+ concentration considerably enhances the speed of S. oneidensis. This work presents a robust microfluidic platform for generating oxygen and/or flavin+ gradients in an aqueous environment, and demonstrates that two important electron acceptors, oxygen and oxidized riboflavin, cooperatively regulate S. oneidensis migration patterns. The microfluidic tools presented as well as the knowledge gained in this work can be used to guide the future design of BESs for efficient electron production. PMID:27703448

  14. Strength gradient enhances fatigue resistance of steels

    Science.gov (United States)

    Ma, Zhiwei; Liu, Jiabin; Wang, Gang; Wang, Hongtao; Wei, Yujie; Gao, Huajian

    2016-02-01

    Steels are heavily used in infrastructure and the transportation industry, and enhancing their fatigue resistance is a major challenge in materials engineering. In this study, by introducing a gradient microstructure into 304 austenitic steel, which is one of the most widely used types of stainless steel, we show that a strength gradient substantially enhances the fatigue life of the material. Pre-notched samples with negative strength gradients in front of the notch’s tip endure many more fatigue cycles than do samples with positive strength gradients during the crack initiation stage, and samples with either type of gradient perform better than do gradient-free samples with the same average yield strength. However, as a crack grows, samples with positive strength gradients exhibit better resistance to fatigue crack propagation than do samples with negative gradients or no gradient. This study demonstrates a simple and promising strategy for using gradient structures to enhance the fatigue resistance of materials and complements related studies of strength and ductility.

  15. Combinational concentration gradient confinement through stagnation flow.

    Science.gov (United States)

    Alicia, Toh G G; Yang, Chun; Wang, Zhiping; Nguyen, Nam-Trung

    2016-01-21

    Concentration gradient generation in microfluidics is typically constrained by two conflicting mass transport requirements: short characteristic times (τ) for precise temporal control of concentration gradients but at the expense of high flow rates and hence, high flow shear stresses (σ). To decouple the limitations from these parameters, here we propose the use of stagnation flows to confine concentration gradients within large velocity gradients that surround the stagnation point. We developed a modified cross-slot (MCS) device capable of feeding binary and combinational concentration sources in stagnation flows. We show that across the velocity well, source-sink pairs can form permanent concentration gradients. As source-sink concentration pairs are continuously supplied to the MCS, a permanently stable concentration gradient can be generated. Tuning the flow rates directly controls the velocity gradients, and hence the stagnation point location, allowing the confined concentration gradient to be focused. In addition, the flow rate ratio within the MCS rapidly controls (τ ∼ 50 ms) the location of the stagnation point and the confined combinational concentration gradients at low flow shear (0.2 Pa < σ < 2.9 Pa). The MCS device described in this study establishes the method for using stagnation flows to rapidly generate and position low shear combinational concentration gradients for shear sensitive biological assays. PMID:26671507

  16. Wnt Secretion and Gradient Formation

    Directory of Open Access Journals (Sweden)

    Vladimir L. Katanaev

    2013-03-01

    Full Text Available Concentration gradients formed by the lipid-modified morphogens of the Wnt family are known for their pivotal roles during embryogenesis and adult tissue homeostasis. Wnt morphogens are also implicated in a variety of human diseases, especially cancer. Therefore, the signaling cascades triggered by Wnts have received considerable attention during recent decades. However, how Wnts are secreted and how concentration gradients are formed remains poorly understood. The use of model organisms such as Drosophila melanogaster has provided important advances in this area. For instance, we have previously shown that the lipid raft-associated reggie/flotillin proteins influence Wnt secretion and spreading in Drosophila. Our work supports the notion that producing cells secrete Wnt molecules in at least two pools: a poorly diffusible one and a reggie/flotillin-dependent highly diffusible pool which allows morphogen spreading over long distances away from its source of production. Here we revise the current views of Wnt secretion and spreading, and propose two models for the role of the reggie/flotillin proteins in these processes: (i reggies/flotillins regulate the basolateral endocytosis of the poorly diffusible, membrane-bound Wnt pool, which is then sorted and secreted to apical compartments for long-range diffusion, and (ii lipid rafts organized by reggies/flotillins serve as “dating points” where extracellular Wnt transiently interacts with lipoprotein receptors to allow its capture and further spreading via lipoprotein particles. We further discuss these processes in the context of human breast cancer. A better understanding of these phenomena may be relevant for identification of novel drug targets and therapeutic strategies.

  17. Interpretation of the reduced density gradient

    OpenAIRE

    Boto, Roberto A.; Contreras-García, Julia; Tierny, Julien; Piquemal, Jean-Philip

    2015-01-01

    An interpretation of the reduced density gradient in terms of the bosonic kinetic energy density is presented. Contrary to other bonding indicators based on the kinetic energy density such as the localised orbital locator (LOL) or the electron localization function (ELF), the reduced density gradient is not only able to identify covalent bondings, but also ionic and non-covalent interactions. This study reveals that the critical points of the reduced density gradient are closely connected wit...

  18. MONOCYTE CHEMOTACTIC PROTEIN AND RESPONSE TO PEGYLATED INTERFERON-ALPHA-2A TREATMENT IN PATIENTS WITH CHRONIC HEPATITIS C (CHC) GENOTYPE 4.

    Science.gov (United States)

    Mohamed, Amal A; Sayed, Ola; Ali, Omnia E; Sayed, Ghadir A; Moustfa, Zainab; Elagawy, Waleed Ahmed

    2016-04-01

    The prevalence of hepatitis C virus (HCV) infection varies across the world, with the highest number of infections reported in Egypt. Monocyte chemotactic protein-1 (MCP-1) is a potent chemokine, and its hepatic expression is up-regulated during chronic HCV infection. Fifty naive patients with chronic hepatitis C in National Hepatology & Tropical Medicine Research Institute and 20 healthy volunteers as controls were enrolled in a prospective study designed with strict inclusion criteria to nullify the effect of confounding variables and further minimize selection bias. Fifty naive patients were treated with PEG-IFN-a2b, at a dose of 1801 g/kg subcutaneously every week plus ribavirin at a dose of 1000- 1200 mg/day, according to the patient's body weight, for 48 weeks. Quantification of HCV-RNA by real-time PCR and MCP-1 by ELISA were performed for every patient and controls. There was a sta- tistically significant difference between patients and control group as regards the quantity of MCP-1 (P < 0.05) (Mann-Whitney test) (P = 0.004). There was a significant difference between responders and nonresponses regarding MCP-1 (P < 0.05), responders showed a higher percentage of cases with initial MCP-1 < 306 (P < 0.05). We conclude the importance of the detection of MCP-1 expression at the start of therapy as a factor for assessing the likelihood of HCV genotype 4 patients to achieving a sustained virological response to treatment with IFN-a2 in combination with ribavirin. PMID:27363047

  19. Monocyte chemotactic protein-1 and soluble adhesion molecules as possible prognostic markers of the efficacy of antiviral treatment in chronic hepatitis C

    Institute of Scientific and Technical Information of China (English)

    Anatol Panasiuk; Danuta Prokopowicz; Bozena Panasiuk

    2004-01-01

    AIM: To explain the role of Monocyte chemotactic protein-1 (MCP-1) and soluble adhesion molecules in chronic hepatitis C during the treatment of interferon alpha (IFNα) 2 b and ribavirin (RBV).METHODS: Concentrations of MCP-1, soluble adhesion molecules intercellular adhesion molecule-1 (sICAM-1), sPselectin, interleukin (IL) 6, and IL10 in serum were estimated in the group of 40 patients with chronic hepatitis C treated with IFNalpha2 b and RBV in 0, 16, 32, 48 wk of the therapy.RESULTS: In chronic hepatitis C, before and during the treatment, the serum levels of MCP-1 and sP-selectin in responders were similar to those of healthy subjects. In nonresponders (NR), MCP-1 increased in the course of IFNα+RBV treatment, differences were statistically significant as compared to responders. MCP-1 correlated statistically with the activity of pedportal inflammation (r = 0.35, P<0.05) but not with staging of liver fibrosis. sICAM-1 positively correlated with inflammatory activity and fibrosis in NR. sP-selectin did not correlate with histological findings in the liver. The MCP-1 correlated with the soluble form of sP-selectin concentrations (r = 6, P<0.001) and with IL-10 level in NR (r = 0.4, P<0.05). There was no correlation observed between the concentration of MCP-1 and sICAM-1, IL-6 during the treatment.CONCLUSION: MCP-1 concentration may be a prognostic marker of the efficacy of IFN+RBV therapy in patients with chronic hepatitis C.

  20. On lower order strain gradient plasticity theories

    DEFF Research Database (Denmark)

    Niordson, Christian Frithiof; Hutchinson, J. W.

    2003-01-01

    By way of numerical examples, this paper explores the nature of solutions to a class of strain gradient plasticity theories that employ conventional stresses, equilibrium equations and boundary conditions. Strain gradients come into play in these modified conventional theories only to alter...... the tangent moduli governing increments of stress and strain. It is shown that the modification is far from benign from a mathematical standpoint, changing the qualitative character of solutions and leading to a new type of localization that is at odds with what is expected from a strain gradient theory....... The findings raise questions about the physical acceptability of this class of strain gradient theories....

  1. Wireless SAW Based Temperature Gradient Sensor Project

    Data.gov (United States)

    National Aeronautics and Space Administration — Prime Photonics proposes design and development of a surface acoustic wave (SAW) based temperature gradient sensor for instrumentation of thermal protection systems...

  2. INFLUENCES OF SLOPE GRADIENT ON SOIL EROSION

    Institute of Scientific and Technical Information of China (English)

    刘青泉; 陈力; 李家春

    2001-01-01

    The main factors influencing soil erosion include the net rain excess, the water depth, the velocity, the shear stress of overland flows , and the erosion-resisting capacity of soil. The laws of these factors varying with the slope gradient were investigated by using the kinematic wave theory. Furthermore, the critical slope gradient of erosion was driven. The analysis shows that the critical slope gradient of soil erosion is dependent on grain size , soil bulk density , surface roughness, runoff length, net rain excess, and the friction coefficient of soil, etc. The critical slope gradient has been estimated theoretically with its range between 41. 5 °~ 50°.

  3. An Inexpensive Digital Gradient Controller for HPLC.

    Science.gov (United States)

    Brady, James E.; Carr, Peter W.

    1983-01-01

    Use of gradient elution techniques in high performance liquid chromatography (HPLC) is often essential for direct separation of complex mixtures. Since most commercial controllers have features that are of marginal value for instructional purposes, a low-cost controller capable of illustrating essential features of gradient elution was developed.…

  4. Newton's method in the context of gradients

    Directory of Open Access Journals (Sweden)

    John W. Neuberger

    2007-09-01

    Full Text Available This paper gives a common theoretical treatment for gradient and Newton type methods for general classes of problems. First, for Euler-Lagrange equations Newton's method is characterized as an (asymptotically optimal variable steepest descent method. Second, Sobolev gradient type minimization is developed for general problems using a continuous Newton method which takes into account a "boundary condition" operator.

  5. On 4-dimensional gradient shrinking solitons

    OpenAIRE

    Ni, Lei; Wallach, Nolan

    2007-01-01

    In this paper we classify the four dimensional gradient shrinking solitons under certain curvature conditions satisfied by all solitons arising from finite time singularities of Ricci flow on compact four manifolds with positive isotropic curvature. As a corollary we generalize a result of Perelman on three dimensional gradient shrinking solitons to dimension four.

  6. Density Gradient Stabilization of Electron Temperature Gradient Driven Turbulence in a Spherical Tokamak

    Energy Technology Data Exchange (ETDEWEB)

    Ren, Y; Mazzucato, E; Guttenfelder, W; Bell, R E; Domier, C W; LeBlanc, B P; Lee, K C; Luhmann Jr, N C; Smith, D R

    2011-03-21

    In this letter we report the first clear experimental observation of density gradient stabilization of electron temperature gradient driven turbulence in a fusion plasma. It is observed that longer wavelength modes, k⊥ρs ≤10, are most stabilized by density gradient, and the stabilization is accompanied by about a factor of two decrease in the plasma effective thermal diffusivity.

  7. Density Gradient Stabilization of Electron Temperature Gradient Driven Turbulence in a Spherical Tokamak

    International Nuclear Information System (INIS)

    In this letter we report the first clear experimental observation of density gradient stabilization of electron temperature gradient driven turbulence in a fusion plasma. It is observed that longer wavelength modes, k (perpendicular) ρs ∼< 10, are most stabilized by density gradient, and the stabilization is accompanied by about a factor of two decrease in the plasma effective thermal diffusivity.

  8. Dual fuel gradients in uranium silicide plates

    Energy Technology Data Exchange (ETDEWEB)

    Pace, B.W. [Babock and Wilcox, Lynchburg, VA (United States)

    1997-08-01

    Babcock & Wilcox has been able to achieve dual gradient plates with good repeatability in small lots of U{sub 3}Si{sub 2} plates. Improvements in homogeneity and other processing parameters and techniques have allowed the development of contoured fuel within the cladding. The most difficult obstacles to overcome have been the ability to evaluate the bidirectional fuel loadings in comparison to the perfect loading model and the different methods of instilling the gradients in the early compact stage. The overriding conclusion is that to control the contour of the fuel, a known relationship between the compact, the frames and final core gradient must exist. Therefore, further development in the creation and control of dual gradients in fuel plates will involve arriving at a plausible gradient requirement and building the correct model between the compact configuration and the final contoured loading requirements.

  9. Stellar Metallicity Gradients in SDSS galaxies

    CERN Document Server

    Roig, Benjamin; Yan, Renbin

    2015-01-01

    We infer stellar metallicity and abundance ratio gradients for a sample of red galaxies in the Sloan Digital Sky Survey (SDSS) Main galaxy sample. Because this sample does not have multiple spectra at various radii in a single galaxy, we measure these gradients statistically. We separate galaxies into stellar mass bins, stack their spectra in redshift bins, and calculate the measured absorption line indices in projected annuli by differencing spectra in neighboring redshift bins. After determining the line indices, we use stellar population modeling from the EZ\\_Ages software to calculate ages, metallicities, and abundance ratios within each annulus. Our data covers the central regions of these galaxies, out to slightly higher than $1 R_{e}$. We find detectable gradients in metallicity and relatively shallow gradients in abundance ratios, similar to results found for direct measurements of individual galaxies. The gradients are only weakly dependent on stellar mass, and this dependence is well-correlated with...

  10. Intracellular chemical gradients: morphing principle in bacteria

    Directory of Open Access Journals (Sweden)

    Endres Robert G

    2012-09-01

    Full Text Available Abstract Advances in computational biology allow systematic investigations to ascertain whether internal chemical gradients can be maintained in bacteria – an open question at the resolution limit of fluorescence microscopy. While it was previously believed that the small bacterial cell size and fast diffusion in the cytoplasm effectively remove any such gradient, a new computational study published in BMC Biophysics supports the emerging view that gradients can exist. The study arose from the recent observation that phosphorylated CtrA forms a gradient prior to cell division in Caulobacter crescentus, a bacterium known for its complicated cell cycle. Tropini et al. (2012 postulate that such gradients can provide an internal chemical compass, directing protein localization, cell division and cell development. More specifically, they describe biochemical and physical constraints on the formation of such gradients and explore a number of existing bacterial cell morphologies. These chemical gradients may limit in vitro analyses, and may ensure timing control and robustness to fluctuations during critical stages in cell development.

  11. Sound beam manipulation based on temperature gradients

    International Nuclear Information System (INIS)

    Previous research with temperature gradients has shown the feasibility of controlling airborne sound propagation. Here, we present a temperature gradients based airborne sound manipulation schemes: a cylindrical acoustic omnidirectional absorber (AOA). The proposed AOA has high absorption performance which can almost completely absorb the incident wave. Geometric acoustics is used to obtain the refractive index distributions with different radii, which is then utilized to deduce the desired temperature gradients. Since resonant units are not applied in the scheme, its working bandwidth is expected to be broadband. The scheme is temperature-tuned and easy to realize, which is of potential interest to fields such as noise control or acoustic cloaking

  12. GRADIENT ENERGY DETECTION OF LSB STEGANOGRAPHY

    Institute of Scientific and Technical Information of China (English)

    Li Zhi; Sui Aifen; Niu Xinxin; Yang Yixian

    2005-01-01

    The spatial Least Significant Bit (LSB) steganography results in the alteration of the smooth characteristics between adjoining pixels of the raw image. The relation between the length of embedded message and the gradient energy is theoretically analyzed, and then a steganalysis and detection method, named Gradient Energy-Flipping Rate (GEFR) detection is proposed. Based on the analysis of the variation of the gradient energy, which results from the LSB steganography in color and grayscale image, the secret message embedded in the target image is detected, and the length of the embedded message is estimated. The method is proved effective and accurate by simulation (detection rate reaches 0.01bit per pixel).

  13. Colour and stellar population gradients in galaxies

    CERN Document Server

    Tortora, C; Cardone, V F; Capaccioli, M; Jetzer, P; Molinaro, R

    2010-01-01

    We discuss the colour, age and metallicity gradients in a wide sample of local SDSS early- and late-type galaxies. From the fitting of stellar population models we find that metallicity is the main driver of colour gradients and the age in the central regions is a dominant parameter which rules the scatter in both metallicity and age gradients. We find a consistency with independent observations and a set of simulations. From the comparison with simulations and theoretical considerations we are able to depict a general picture of a formation scenario.

  14. Gradient Yamabe Solitons on Warped Products

    OpenAIRE

    He, Chenxu

    2011-01-01

    The special nature of gradient Yamabe soliton equation which was first observed by Cao-Sun-Zhang\\cite{CaoSunZhang} shows that a complete gradient Yamabe soliton with non-constant potential function is either defined on the Euclidean space with rotational symmetry, or on the warped product of the real line with a manifold of constant scalar curvature. In this paper we consider the classification in the latter case. We show that a complete gradient steady Yamabe soliton on warped product is nec...

  15. Sound beam manipulation based on temperature gradients

    Energy Technology Data Exchange (ETDEWEB)

    Qian, Feng [Key Laboratory of Modern Acoustics, Institute of Acoustics and School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing 210093 (China); School of Physics & Electronic Engineering, Changshu Institute of Technology, Changshu 215500 (China); Quan, Li; Liu, Xiaozhou, E-mail: xzliu@nju.edu.cn; Gong, Xiufen [Key Laboratory of Modern Acoustics, Institute of Acoustics and School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing 210093 (China)

    2015-10-28

    Previous research with temperature gradients has shown the feasibility of controlling airborne sound propagation. Here, we present a temperature gradients based airborne sound manipulation schemes: a cylindrical acoustic omnidirectional absorber (AOA). The proposed AOA has high absorption performance which can almost completely absorb the incident wave. Geometric acoustics is used to obtain the refractive index distributions with different radii, which is then utilized to deduce the desired temperature gradients. Since resonant units are not applied in the scheme, its working bandwidth is expected to be broadband. The scheme is temperature-tuned and easy to realize, which is of potential interest to fields such as noise control or acoustic cloaking.

  16. CMB Anisotropies from a Gradient Mode

    CERN Document Server

    Mirbabayi, Mehrdad

    2014-01-01

    A pure gradient mode must have no observable dynamical effect at linear level. We confirm this by showing that its contribution to the dipolar power asymmetry of CMB anisotropies vanishes, if Maldacena's consistency condition is satisfied. To this end, the existing second order Sachs-Wolfe formula in the squeezed limit is extended to include a gradient in the long mode and to account for the change in the location of the last scattering surface induced by this mode. At second order, a gradient mode generated in Single-field inflation is shown to induce a quadrupole moment. For instance in a matter-dominated model it is equal to 5/18 times the square of the linear gradient part. This quadrupole can be cancelled by superposing a quadratic perturbation. The result is shown to be a non-linear extension of Weinberg's adiabatic modes: a long-wavelength physical mode which looks locally like a coordinate transformation.

  17. Unimodal and crossmodal gradients of spatial attention

    DEFF Research Database (Denmark)

    Föcker, J.; Hötting, K.; Gondan, Matthias;

    2010-01-01

    Behavioral and event-related potential (ERP) studies have shown that spatial attention is gradually distributed around the center of the attentional focus. The present study compared uni- and crossmodal gradients of spatial attention to investigate whether the orienting of auditory and visual...... spatial attention is based on modality specific or supramodal representations of space. Auditory and visual stimuli were presented from five speaker locations positioned in the right hemifield. Participants had to attend to the innermost or outmost right position in order to detect either visual...... or auditory deviant stimuli. Detection rates and event-related potentials (ERPs) indicated that spatial attention is distributed as a gradient. Unimodal spatial ERP gradients correlated with the spatial resolution of the modality. Crossmodal spatial gradients were always broader than the corresponding...

  18. Vegetation patterns and environmental gradients in Benin

    NARCIS (Netherlands)

    Adomou, A.

    2005-01-01

    Key words: West Africa, Benin, vegetation patterns, floristic areas, phytogeography, chorology, floristic gradients, climatic factors, water availability, Dahomey Gap, threatened plants, biodiversity, conservation.Understanding plant species distribution patterns and the underlying factors is a cruc

  19. Artificial photosynthesis: Light-activated calcium gradients

    Science.gov (United States)

    Thompson, David H.

    2002-12-01

    Photosynthetic organisms use light to create chemical gradients across bilayer membranes that drive energetically unfavourable reactions. Synthetic systems that accomplish the same feat may find uses in a variety of biological and non-biological applications.

  20. The gradient flow in simple field theories

    CERN Document Server

    Monahan, Christopher

    2015-01-01

    The gradient flow is a valuable tool for the lattice community, with applications from scale-setting to implementing chiral fermions. Here I focus on the gradient flow as a means to suppress power-divergent mixing. Power-divergent mixing stems from the hypercubic symmetry of the lattice regulator and is a particular difficulty for calculations of, for example, high moments of parton distribution functions. The gradient flow removes power-divergent mixing on the lattice, provided the flow time is kept fixed in physical units, at the expense of introducing a new physical scale in the continuum. One approach to dealing with this new scale is the smeared operator product expansion, a formalism that systematically connects nonperturbative calculations of flowed operators to continuum physics. I study the role of the gradient flow in suppressing power-divergent mixing and present the first nonperturbative study in scalar field theory.

  1. Voltammetry under a Controlled Temperature Gradient

    OpenAIRE

    Jan Krejci, Jr.; Tomas Marvanek; Zuzana Sajdlova; Jan Krejci

    2010-01-01

    Electrochemical measurements are generally done under isothermal conditions. Here we report on the application of a controlled temperature gradient between the working electrode surface and the solution. Using electrochemical sensors prepared on ceramic materials with extremely high specific heat conductivity, the temperature gradient between the electrode and solution was applied here as a second driving force. This application of the Soret phenomenon increases the mass transfer in the Nerns...

  2. The gradient flow in a twisted box

    Energy Technology Data Exchange (ETDEWEB)

    Ramos, Alberto [Deutsches Elektronen-Synchrotron (DESY), Zeuthen (Germany). John von Neumann-Inst. fuer Computing NIC

    2013-08-15

    We study the perturbative behavior of the gradient flow in a twisted box. We apply this information to define a running coupling using the energy density of the flow field. We study the step-scaling function and the size of cutoff effects in SU(2) pure gauge theory. We conclude that the twisted gradient flow running coupling scheme is a valid strategy for step-scaling purposes due to the relatively mild cutoff effects and high precision.

  3. Nonlinear strain gradient elastic thin shallow shells

    OpenAIRE

    Lazopoulos, K.A.

    2011-01-01

    Abstract The governing equilibrium equations for strain gradient elastic thin shallow shells are derived, considering non-linear strains and linear constitutive strain gradient elastic relations. Adopting Kirchhoff's theory of thin shallow structures, the equilibrium equations, along with the boundary conditions, are formulated through a variational procedure. It turns out that new terms are introduced, indicating the importance of the cross-section area in bending of thin plates. ...

  4. Gradient-prolongation commutativity and graph theory

    OpenAIRE

    Musy, François; Nicolas, Laurent; Perrussel, Ronan

    2007-01-01

    6 pages International audience This Note gives conditions that must be imposed to algebraic multilevel discretizations involving at the same time nodal and edge elements so that a gradient-prolongation commutativity condition will be satisfied; this condition is very important, since it characterizes the gradients of coarse nodal functions in the coarse edge function space. They will be expressed using graph theory and they provide techniques to compute approximation bases at each level.

  5. The local power of the gradient test

    CERN Document Server

    Lemonte, Artur

    2010-01-01

    The asymptotic expansion of the distribution of the gradient test statistic is derived for a composite hypothesis under a sequence of Pitman alternative hypotheses converging to the null hypothesis at rate $n^{-1/2}$, $n$ being the sample size. Comparisons of the local powers of the gradient, likelihood ratio, Wald and score tests reveal no uniform superiority property. The power performance of all four criteria in one-parameter exponential family is examined.

  6. Intratumoral oxygen gradients mediate sarcoma cell invasion.

    Science.gov (United States)

    Lewis, Daniel M; Park, Kyung Min; Tang, Vitor; Xu, Yu; Pak, Koreana; Eisinger-Mathason, T S Karin; Simon, M Celeste; Gerecht, Sharon

    2016-08-16

    Hypoxia is a critical factor in the progression and metastasis of many cancers, including soft tissue sarcomas. Frequently, oxygen (O2) gradients develop in tumors as they grow beyond their vascular supply, leading to heterogeneous areas of O2 depletion. Here, we report the impact of hypoxic O2 gradients on sarcoma cell invasion and migration. O2 gradient measurements showed that large sarcoma mouse tumors (>300 mm(3)) contain a severely hypoxic core [≤0.1% partial pressure of O2 (pO2)] whereas smaller tumors possessed hypoxic gradients throughout the tumor mass (0.1-6% pO2). To analyze tumor invasion, we used O2-controllable hydrogels to recreate the physiopathological O2 levels in vitro. Small tumor grafts encapsulated in the hydrogels revealed increased invasion that was both faster and extended over a longer distance in the hypoxic hydrogels compared with nonhypoxic hydrogels. To model the effect of the O2 gradient accurately, we examined individual sarcoma cells embedded in the O2-controllable hydrogel. We observed that hypoxic gradients guide sarcoma cell motility and matrix remodeling through hypoxia-inducible factor-1α (HIF-1α) activation. We further found that in the hypoxic gradient, individual cells migrate more quickly, across longer distances, and in the direction of increasing O2 tension. Treatment with minoxidil, an inhibitor of hypoxia-induced sarcoma metastasis, abrogated cell migration and matrix remodeling in the hypoxic gradient. Overall, we show that O2 acts as a 3D physicotactic agent during sarcoma tumor invasion and propose the O2-controllable hydrogels as a predictive system to study early stages of the metastatic process and therapeutic targets. PMID:27486245

  7. ONLINE REGULARIZED GENERALIZED GRADIENT CLASSIFICATION ALGORITHMS

    Institute of Scientific and Technical Information of China (English)

    Leilei Zhang; Baohui Sheng; Jianli Wang

    2010-01-01

    This paper considers online classification learning algorithms for regularized classification schemes with generalized gradient.A novel capacity independent approach is presented.It verifies the strong convergence of sizes and yields satisfactory convergence rates for polynomially decaying step sizes.Compared with the gradient schemes,this al-gorithm needs only less additional assumptions on the loss function and derives a stronger result with respect to the choice of step sizes and the regularization parameters.

  8. Design of spherical symmetric gradient index lenses

    OpenAIRE

    Miñano Dominguez, Juan Carlos; Grabovičkić, Dejan; Benitez Gimenez, Pablo; Gonzalez Lopez, Juan Carlos; Santamaria Galdon, Maria Asuncion

    2012-01-01

    Spherical symmetric refractive index distributions also known as Gradient Index lenses such as the Maxwell-Fish-Eye (MFE), the Luneburg or the Eaton lenses have always played an important role in Optics. The recent development of the technique called Transformation Optics has renewed the interest in these gradient index lenses. For instance, Perfect Imaging within the Wave Optics framework has recently been proved using the MFE distribution. We review here the design problem of these lenses, ...

  9. Cellular Sensing Ability in Spatial Gradients Environment

    CERN Document Server

    Liou, Shu-Hao

    2011-01-01

    Many eukaryotic and prokaruotic cells can exhibit remarkable sensing ability under tiny gradient of chemical compound. Here we consider the completely grand partition function with ligands and receptors and demonstrate the minimum asymptotic variances to show the ability. These results avoid the inconsistencies from other studies. Moreover, we show the gradient steepness is more important element in sensing ability than local concentration, and our results are corresponding with other experiment results.

  10. Gradient-based compressive image fusion

    Institute of Scientific and Technical Information of China (English)

    Yang CHEN‡; Zheng QIN

    2015-01-01

    We present a novel image fusion scheme based on gradient and scrambled block Hadamard ensemble (SBHE) sam-pling for compressive sensing imaging. First, source images are compressed by compressive sensing, to facilitate the transmission of the sensor. In the fusion phase, the image gradient is calculated to reflect the abundance of its contour information. By com-positing the gradient of each image, gradient-based weights are obtained, with which compressive sensing coefficients are achieved. Finally, inverse transformation is applied to the coefficients derived from fusion, and the fused image is obtained. Information entropy (IE), Xydeas’s and Piella’s metrics are applied as non-reference objective metrics to evaluate the fusion quality in line with different fusion schemes. In addition, different image fusion application scenarios are applied to explore the scenario adaptability of the proposed scheme. Simulation results demonstrate that the gradient-based scheme has the best per-formance, in terms of both subjective judgment and objective metrics. Furthermore, the gradient-based fusion scheme proposed in this paper can be applied in different fusion scenarios.

  11. Pressure gradient influence in turbulent boundary layers

    Science.gov (United States)

    Reuther, Nico; Kaehler, Christian J.

    2015-11-01

    Understanding wall-bounded turbulence is still an ongoing process. Although remarkable progress has been made in the last decades, many challenges still remain. Mean flow statistics are well understood in case of zero pressure gradient flows. However, almost all turbulent boundary layers in technical applications, such as aircrafts, are subjected to a streamwise pressure gradient. When subjecting turbulent boundary layers to adverse pressure gradients, significant changes in the statistical behavior of the near-wall flow have been observed in experimental studies conducted however the details dynamics and characteristics of these flows has not been fully resolved. The sensitivity to Reynolds number and the dependency on several parameters, including the dependence on the pressure gradient parameter, is still under debate and very little information exists about statistically averaged quantities such as the mean velocity profile or Reynolds stresses. In order to improve the understanding of wall-bounded turbulence, this work experimentally investigates turbulent boundary layer subjected to favorable and adverse pressure gradients by means of Particle Image Velocimetry over a wide range of Reynolds numbers, 4200 statistics was found to increase significantly for a flow subjected to an adverse pressure gradient.

  12. Irreducible decomposition of strain gradient tensor in isotropic strain gradient elasticity

    CERN Document Server

    Lazar, Markus

    2016-01-01

    In isotropic strain gradient elasticity, we decompose the strain gradient tensor into its irreducible pieces under the n-dimensional orthogonal group O(n). Using the Young tableau method for traceless tensors, four irreducible pieces (n>2), which are canonical, are obtained. In three dimensions, the strain gradient tensor can be decomposed into four irreducible pieces with 7+5+3+3 independent components whereas in two dimensions, the strain gradient tensor can be decomposed into three irreducible pieces with 2+2+2 independent components. The knowledge of these irreducible pieces is extremely useful when setting up constitutive relations and strain energy.

  13. Improving the accuracy of pulsed field gradient NMR diffusion experiments: Correction for gradient non-uniformity

    Science.gov (United States)

    Connell, Mark A.; Bowyer, Paul J.; Adam Bone, P.; Davis, Adrian L.; Swanson, Alistair G.; Nilsson, Mathias; Morris, Gareth A.

    2009-05-01

    Pulsed field gradient NMR is a well-established technique for the determination of self-diffusion coefficients. However, a significant source of systematic error exists in the spatial variation of the applied pulsed field gradient. Non-uniform pulsed field gradients cause the decay of peak amplitudes to deviate from the expected exponential dependence on gradient squared. This has two undesirable effects: the apparent diffusion coefficient will deviate from the true value to an extent determined by the choice of experimental parameters, and the error estimated by the nonlinear least squares fitting will contain a significant systematic contribution. In particular, the apparent diffusion coefficient determined by exponential fitting of the diffusional attenuation of NMR signals will depend both on the exact pulse widths used and on the range of gradient amplitudes chosen. These problems can be partially compensated for if experimental attenuation data are fitted to a function corrected for the measured spatial dependence of the gradient and signal strength. This study describes a general alternative to existing methods for the calibration of NMR diffusion measurements. The dominant longitudinal variation of the pulsed field gradient amplitude and the signal strength are mapped by measuring pulsed field gradient echoes in the presence of a weak read gradient. These data are then used to construct a predicted signal decay function for the whole sample, which is parameterised as the exponential of a power series. Results are presented which compare diffusion coefficients obtained using the new calibration method with previous literature values.

  14. Constrained length minimum inductance gradient coil design.

    Science.gov (United States)

    Chronik, B A; Rutt, B K

    1998-02-01

    A gradient coil design algorithm capable of controlling the position of the homogeneous region of interest (ROI) with respect to the current-carrying wires is required for many advanced imaging and spectroscopy applications. A modified minimum inductance target field method that allows the placement of a set of constraints on the final current density is presented. This constrained current minimum inductance method is derived in the context of previous target field methods. Complete details are shown and all equations required for implementation of the algorithm are given. The method has been implemented on computer and applied to the design of both a 1:1 aspect ratio (length:diameter) central ROI and a 2:1 aspect ratio edge ROI gradient coil. The 1:1 design demonstrates that a general analytic method can be used to easily obtain very short gradient coil designs for use with specialized magnet systems. The edge gradient design demonstrates that designs that allow imaging of the neck region with a head sized gradient coil can be obtained, as well as other applications requiring edge-of-cylinder regions of uniformity.

  15. Gradient-enhanced FAWSETS perfusion measurements

    Science.gov (United States)

    Marro, Kenneth I.; Lee, Donghoon; Hyyti, Outi M.

    2005-08-01

    This work describes the use of custom-built gradients to enhance skeletal muscle perfusion measurements acquired with a previously described arterial spin labeling technique known as FAWSETS (flow-driven arterial water stimulation with elimination of tissue signal). Custom-built gradients provide active control of the static magnetic field gradient on which FAWSETS relies for labeling. This allows selective, 180° modulations of the phase of the perfusion component of the signal. Phase cycling can then be implemented to eliminate all extraneous components leaving a signal that exclusively reflects capillary-level perfusion. Gradient-enhancement substantially reduces acquisition time and eliminates the need to acquire an ischemic signal to quantify perfusion. This removes critical obstacles to application of FAWSETS in organs other than skeletal muscle and makes the measurements more desirable for clinical environments. The basic physical principles of gradient-enhancement are demonstrated in flow phantom experiments and in vivo utility is demonstrated in rat hind limb during stimulated exercise.

  16. Adaptive Thermostats for Noisy Gradient Systems

    CERN Document Server

    Leimkuhler, Benedict

    2015-01-01

    We study numerical methods for sampling probability measures in high dimensions where the underlying model is only approximately identified with a gradient system. Extended stochastic dynamical methods are discussed which have application to multiscale models, nonequilibrium molecular dynamics and Bayesian sampling techniques arising in emerging machine learning applications. In addition to providing a more comprehensive discussion of the foundations of these methods, we propose a new numerical method for the Adaptive Langevin/stochastic gradient Nos\\'e-Hoover thermostat that achieves a dramatic improvement in numerical efficiency over the most popular stochastic gradient methods reported in the literature. We also demonstrate that the newly-established method inherits a superconvergence property (fourth order convergence to the invariant measure for configurational quantities) recently demonstrated in the setting of Langevin dynamics. Our findings are verified by numerical experiments.

  17. Dynamics of gradient formation by intracellular shuttling

    Energy Technology Data Exchange (ETDEWEB)

    Berezhkovskii, Alexander M. [Mathematical and Statistical Computing Laboratory, Division of Computational Bioscience, Center for Information Technology, National Institutes of Health, Bethesda, Maryland 20892 (United States); Shvartsman, Stanislav Y. [Department of Chemical and Biological Engineering and Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544 (United States)

    2015-08-21

    A number of important cellular functions rely on the formation of intracellular protein concentration gradients. Experimental studies discovered a number of mechanisms for the formation of such gradients. One of the mechanisms relies on the intracellular shuttling of a protein that interconverts between the two states with different diffusivities, under the action of two enzymes, one of which is localized to the plasma membrane, whereas the second is uniformly distributed in the cytoplasm. Recent work reported an analytical solution for the steady state gradient in this mechanism, obtained in the framework of a one-dimensional reaction-diffusion model. Here, we study the dynamics in this model and derive analytical expressions for the Laplace transforms of the time-dependent concentration profiles in terms of elementary transcendental functions. Inverting these transforms numerically, one can obtain time-dependent concentration profiles of the two forms of the protein.

  18. Time Rate Gradient Effects and Negative Mass

    Science.gov (United States)

    Miksch, Edmond

    2008-03-01

    The Harvard tower Experiment and tests with accurate atomic clocks show that a clock at a high elevation indicates more elapsed time than a clock at a low elevation, both clocks properly measuring time at their locations. This fact mandates that Newton's first law of motion be rewritten to cite impulse balance rather than force balance. Time rate gradient effects explain how the weight of a precisely vertical and precisely uniform electric field or a precisely vertical and precisely uniform magnetic field is supported in a precisely unidirectional gravitational field. Time rate gradient effects also explain how the weight of a unidirectional gravitational field is reacted. It is confirmed that the mass density of the gravitational field is negative. http://www.TimeRateGradient.com; http://www.Negative-Mass.com; http://www.EinsteinsElevator.com

  19. Optimizing sampling approaches along ecological gradients

    DEFF Research Database (Denmark)

    Schweiger, Andreas; Irl, Severin D. H.; Steinbauer, Manuel;

    2015-01-01

    1. Natural scientists and especially ecologists use manipulative experiments or field observations along gradients to differentiate patterns driven by processes from those caused by random noise. A well-conceived sampling design is essential for identifying, analysing and reporting underlying...... and reproducible guideline for sampling along gradients in all fields of ecology and science in general. 2. We conducted simulations with artificial data for five common response types known in ecology, each represented by a simple function (no response, linear, exponential, symmetric unimodal and asymmetric...... unimodal). In the simulations we accounted for different levels of random and systematic error, the two sources of noise in ecological data. We quantified prediction success for varying total sample size, number of locations sampled along a spatial/temporal gradient and number of replicates per sampled...

  20. Gradient expansion, curvature perturbations and magnetized plasmas

    CERN Document Server

    Giovannini, Massimo

    2011-01-01

    The properties of magnetized plasmas are always investigated under the hypothesis that the relativistic inhomogeneities stemming from the fluid sources and from the geometry itself are sufficiently small to allow for a perturbative description prior to photon decoupling. The latter assumption is hereby relaxed and pre-decoupling plasmas are described within a suitable expansion where the inhomogeneities are treated to a given order in the spatial gradients. It is argued that the (general relativistic) gradient expansion shares the same features of the drift approximation, customarily employed in the description of cold plasmas, so that the two schemes are physically complementary in the large-scale limit and for the low-frequency branch of the spectrum of plasma modes. The two-fluid description, as well as the magnetohydrodynamical reduction, are derived and studied in the presence of the spatial gradients of the geometry. Various solutions of the coupled system of evolution equations in the anti-Newtonian re...

  1. Vertical gradients of sunspot magnetic fields

    Energy Technology Data Exchange (ETDEWEB)

    Hagyard, M.J.; Teuber, D.; West, E.A.; Tandberg-Hanssen, E.; Henze, W. Jr.; Beckers, J.M.

    1983-04-01

    The results of a Solar Maximum Mission (SMM) guest investigation to determine the vertical gradients of sunspot magnetic fields for the first time from coordinated observations of photospheric and transition-region fields are described. Descriptions are given of both the photospheric vector field of a sunspot, derived from observations using the NASA Marshall Space Flight Center vector magnetograph, and of the line-of-sight component in the transition region, obtained from the SMM Ultraviolet Spectrometer and Polarimeter instrument. On the basis of these data, vertical gradients of the line-of-sight magnetic field component are calculated using three methods. It is found that the vertical gradient of Bz is lower than values from previous studies and that the transition-region field occurs at a height of approximately 4000-6000 km above the photosphere.

  2. On fracture in finite strain gradient plasticity

    DEFF Research Database (Denmark)

    Martínez Pañeda, Emilio; Niordson, Christian Frithiof

    2016-01-01

    In this work a general framework for damage and fracture assessment including the effect of strain gradients is provided. Both mechanism-based and phenomenological strain gradient plasticity (SGP) theories are implemented numerically using finite deformation theory and crack tip fields are...... investigated. Differences and similarities between the two approaches within continuum SGP modeling are highlighted and discussed. Local strain hardening promoted by geometrically necessary dislocations (GNDs) in the vicinity of the crack leads to much higher stresses, relative to classical plasticity...... predictions. These differences increase significantly when large strains are taken into account, as a consequence of the contribution of strain gradients to the work hardening of the material. The magnitude of stress elevation at the crack tip and the distance ahead of the crack where GNDs significantly alter...

  3. Substrate Curvature Gradient Drives Rapid Droplet Motion

    Science.gov (United States)

    Lv, Cunjing; Chen, Chao; Chuang, Yin-Chuan; Tseng, Fan-Gang; Yin, Yajun; Grey, Francois; Zheng, Quanshui

    2014-07-01

    Making small liquid droplets move spontaneously on solid surfaces is a key challenge in lab-on-chip and heat exchanger technologies. Here, we report that a substrate curvature gradient can accelerate micro- and nanodroplets to high speeds on both hydrophilic and hydrophobic substrates. Experiments for microscale water droplets on tapered surfaces show a maximum speed of 0.42 m/s, 2 orders of magnitude higher than with a wettability gradient. We show that the total free energy and driving force exerted on a droplet are determined by the substrate curvature and substrate curvature gradient, respectively. Using molecular dynamics simulations, we predict nanoscale droplets moving spontaneously at over 100 m/s on tapered surfaces.

  4. Collective chemotaxis through noisy multicellular gradient sensing

    CERN Document Server

    Varennes, Julien; Mugler, Andrew

    2016-01-01

    Collective cell migration in response to a chemical cue occurs in many biological processes such as morphogenesis and cancer metastasis. Clusters of migratory cells in these systems are capable of responding to gradients of less than 1% difference in chemical concentration across a cell length. Multicellular systems are extremely sensitive to their environment and while the limits to multicellular sensing are becoming known, how this information leads to coherent migration remains poorly understood. We develop a computational model of multicellular sensing and migration in which groups of cells collectively measure noisy chemical gradients. The output of the sensing process is coupled to individual cells polarization to model migratory behavior. Through the use of numerical simulations, we find that larger clusters of cells detect the gradient direction with higher precision and thus achieve stronger polarization bias, but larger clusters also induce more drag on collective motion. The trade-off between these...

  5. Conjugate gradient algorithms using multiple recursions

    Energy Technology Data Exchange (ETDEWEB)

    Barth, T.; Manteuffel, T.

    1996-12-31

    Much is already known about when a conjugate gradient method can be implemented with short recursions for the direction vectors. The work done in 1984 by Faber and Manteuffel gave necessary and sufficient conditions on the iteration matrix A, in order for a conjugate gradient method to be implemented with a single recursion of a certain form. However, this form does not take into account all possible recursions. This became evident when Jagels and Reichel used an algorithm of Gragg for unitary matrices to demonstrate that the class of matrices for which a practical conjugate gradient algorithm exists can be extended to include unitary and shifted unitary matrices. The implementation uses short double recursions for the direction vectors. This motivates the study of multiple recursion algorithms.

  6. Design of spherical symmetric gradient index lenses

    Science.gov (United States)

    Miñano, Juan C.; Grabovičkić, Dejan; Benítez, Pablo; González, Juan C.; Santamaría, Asunción

    2012-10-01

    Spherical symmetric refractive index distributions also known as Gradient Index lenses such as the Maxwell-Fish-Eye (MFE), the Luneburg or the Eaton lenses have always played an important role in Optics. The recent development of the technique called Transformation Optics has renewed the interest in these gradient index lenses. For instance, Perfect Imaging within the Wave Optics framework has recently been proved using the MFE distribution. We review here the design problem of these lenses, classify them in two groups (Luneburg moveable-limits and fixed-limits type), and establish a new design techniques for each type of problem.

  7. Multiplicative Noise Removal using Gradient and Laplacian

    Institute of Scientific and Technical Information of China (English)

    He Lei Pan Zhen-kuan

    2009-01-01

    The variational methods for nmltiplicative noise removal have been received considerable attention in recent years.The traditional models based only on gradient result in staircase effect usually.So a hybrid high-order model based on gradient and Laphcian is proposed for mulfiplicative denoising.In order to avoid the shortcomings of explicit scheme in stability,the Gauss-seidel semi-implicit scheme is adopted.Experiments show that the proposed model can avoid staircase effect during removing multiplicative noise while preserving or enhancing edges.

  8. On lower order strain gradient plasticity theories

    DEFF Research Database (Denmark)

    Niordson, Christian Frithiof; Hutchinson, J. W.

    2002-01-01

    By way of numerical examples, this paper explores the nature of solutions to a class of strain gradient plasticity theories that employ conventional stresses, equilibrium equations and boundary conditions. Strain gradients come into play in these modified conventional theories only to alter...... the tangential moduli governing increments of stress and strain. It is shown that the modification is far from benign from a mathematical standpoint, changing the qualitative character of solutions and leading to a new type of localization that appears to be unphysical....

  9. Gravity gradient determination with tethered systems

    Science.gov (United States)

    Kalaghan, P. M.; Colombo, G.

    1978-01-01

    A detailed investigation of the Earth's gravity field is needed for application to modern solid earth and oceanic investigations. The use of gravity gradiometers presents a technique to measure the intermediate wavelength components of the gravity field. One configuration of a gradiometer involves a tethered pair of masses orbiting the Earth and stabilized by vertical gravity gradient of the earth. A mesurement of the tension in such a system, called the DUMBBELL system is described. It allows the determination of the vertical gradient of the anomalous component of the Earth's gravtiy field. Preliminary analysis of the dynamics, mechanization, expected signal levels and noise environment indicates that the Dumbbell system is feasible.

  10. Short wavelength ion temperature gradient turbulence

    OpenAIRE

    Chowdhury, J.; Brunner, S; Ganesh, R.; Lapillonne, X.; Villard, L.; Jenko, F.

    2012-01-01

    The ion temperature gradient (ITG) mode in the high wavenumber regime (k(y)rho(s) > 1), referred to as short wavelength ion temperature gradient mode (SWITG) is studied using the nonlinear gyrokinetic electromagnetic code GENE. It is shown that, although the SWITG mode may be linearly more unstable than the standard long wavelength (k(y)rho(s) < 1) ITG mode, nonlinearly its contribution to the total thermal ion heat transport is found to be low. We interpret this as resulting from an increase...

  11. 17 GHz High Gradient Accelerator Research

    Energy Technology Data Exchange (ETDEWEB)

    Temkin, Richard J. [MIT; Shapiro, Michael A. [MIT

    2013-07-10

    This is a report on the MIT High Gradient Accelerator Research program which has included: Operation of the 17 GHz, 25 MeV MIT/Haimson Research Corp. electron accelerator at MIT, the highest frequency, stand-alone accelerator in the world; collaboration with members of the US High Gradient Collaboration, including the design and test of novel structures at SLAC at 11.4 GHz; the design, construction and testing of photonic bandgap structures, including metallic and dielectric structures; the investigation of the wakefields in novel structures; and the training of the next generation of graduate students and postdoctoral associates in accelerator physics.

  12. Structures and Strength of Gradient Nanostructures

    DEFF Research Database (Denmark)

    Hansen, Niels; Zhang, Xiaodan; Huang, Xiaoxu

    A recent study [1] has shown that a microstructure can be refined to a record low of 5 nm and that dislocation glide is still a controlling mechanism at this length scale. The nanostructure was produced in Cu by applying a very high strain in friction. The stress and strain decrease with increasing...... distance from the surface forming a gradient structure. In this study [2], by shot peening of a low carbon steel a gradient structure has been produced extending to about 1 mm below the surface. A number of strengthening mechanisms have been analyzed as a basis for a calculation of the stress and strain...

  13. Enhancing synchronization based on complex gradient networks.

    Science.gov (United States)

    Wang, Xingang; Lai, Ying-Cheng; Lai, Choy Heng

    2007-05-01

    The ubiquity of scale-free networks in nature and technological applications and the finding that such networks may be more difficult to synchronize than homogeneous networks pose an interesting phenomenon for study in network science. We argue and demonstrate that, in the presence of some proper gradient fields, scale-free networks can be more synchronizable than homogeneous networks. The gradient structure can in fact arise naturally in any weighted and asymmetrical networks; based on this we propose a coupling scheme that permits effective synchronous dynamics on the network. The synchronization scheme is verified by eigenvalue analysis and by direct numerical simulations using networks of nonidentical chaotic oscillators. PMID:17677146

  14. Onset of synchronization in complex gradient networks.

    Science.gov (United States)

    Wang, Xingang; Huang, Liang; Guan, Shuguang; Lai, Ying-Cheng; Lai, Choy Heng

    2008-09-01

    Recently, it has been found that the synchronizability of a scale-free network can be enhanced by introducing some proper gradient in the coupling. This result has been obtained by using eigenvalue-spectrum analysis under the assumption of identical node dynamics. Here we obtain an analytic formula for the onset of synchronization by incorporating the Kuramoto model on gradient scale-free networks. Our result provides quantitative support for the enhancement of synchronization in such networks, further justifying their ubiquity in natural and in technological systems. PMID:19045491

  15. Gradient Elasticity Formulations for Micro/Nanoshells

    Directory of Open Access Journals (Sweden)

    Bohua Sun

    2014-01-01

    Full Text Available The focus of this paper is on illustrating how to extend the second author’s gradient theory of elasticity to shells. Three formulations are presented based on the implicit gradient elasticity constitutive relation 1 -ld2∇2σij=Cijkl(1-ls2∇2εkl and its two approximations 1+ls2∇2-ld2∇2σij=Cijklεkl and σij=Cijkl(1+ld2∇2-ls2∇2εkl.

  16. High-pressure liquid chromatographic gradient mixer

    Science.gov (United States)

    Daughton, C.G.; Sakaji, R.H.

    1982-09-08

    A gradient mixer effects the continuous mixing of any two miscible solvents without excessive decay or dispersion of the resultant isocratic effluent or of a linear or exponential gradient. The two solvents are fed under low or high pressure by means of two high performance liquid chromatographic pumps. The mixer comprises a series of ultra-low dead volume stainless steel tubes and low dead volume chambers. The two solvent streams impinge head-on at high fluxes. This initial nonhomogeneous mixture is then passed through a chamber packed with spirally-wound wires which cause turbulent mixing thereby homogenizing the mixture with minimum band-broadening.

  17. High pressure liquid chromatographic gradient mixer

    Science.gov (United States)

    Daughton, Christian G.; Sakaji, Richard H.

    1985-01-01

    A gradient mixer which effects the continuous mixing of any two miscible solvents without excessive decay or dispersion of the resultant isocratic effluent or of a linear or exponential gradient. The two solvents are fed under low or high pressure by means of two high performance liquid chromatographic pumps. The mixer comprises a series of ultra-low dead volume stainless steel tubes and low dead volume chambers. The two solvent streams impinge head-on at high fluxes. This initial nonhomogeneous mixture is then passed through a chamber packed with spirally-wound wires which cause turbulent mixing thereby homogenizing the mixture with minimum "band-broadening".

  18. Electric field gradients in Hg compounds

    DEFF Research Database (Denmark)

    Arcisauskaité, Vaida; Knecht, Stefan; Sauer, Stephan P. A.;

    2012-01-01

    We examine the performance of Density Functional Theory (DFT) approaches based on the Zeroth-Order Regular Approximation (ZORA) Hamiltonian (with and without inclusion of spinorbit coupling) for predictions of electric ¿eld gradients (EFGs) at the heavy atom Hg nucleus. This is achieved by compar......We examine the performance of Density Functional Theory (DFT) approaches based on the Zeroth-Order Regular Approximation (ZORA) Hamiltonian (with and without inclusion of spinorbit coupling) for predictions of electric ¿eld gradients (EFGs) at the heavy atom Hg nucleus. This is achieved...

  19. Stress Field Analyses of Functionally Gradient Ceramic Tool by FEM

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    The cutting properties of the functionally gradient ceramic cutting tools relate closely to the gradient distribution. A cutting model of the functionally gradient ceramic tool is firstly designed in the present paper. The optimum of gradient distribution is obtained by way of the FEM analyses.

  20. Up-gradient transport in a probabilistic transport model

    DEFF Research Database (Denmark)

    Gavnholt, J.; Juul Rasmussen, J.; Garcia, O.E.;

    2005-01-01

    The transport of particles or heat against the driving gradient is studied by employing a probabilistic transport model with a characteristic particle step length that depends on the local concentration or heat gradient. When this gradient is larger than a prescribed critical value, the standard....... These results supplement recent works by van Milligen [Phys. Plasmas 11, 3787 (2004)], which applied Levy distributed step sizes in the case of supercritical gradients to obtain the up-gradient transport. (c) 2005 American Institute of Physics....

  1. CMB anisotropies from a gradient mode

    Science.gov (United States)

    Mirbabayi, Mehrdad; Zaldarriaga, Matias

    2015-03-01

    A linear gradient mode must have no observable dynamical effect on short distance physics. We confirm this by showing that if there was such a gradient mode extending across the whole observable Universe, it would not cause any hemispherical asymmetry in the power of CMB anisotropies, as long as Maldacena's consistency condition is satisfied. To study the effect of the long wavelength mode on short wavelength modes, we generalize the existing second order Sachs-Wolfe formula in the squeezed limit to include a gradient in the long mode and to account for the change in the location of the last scattering surface induced by this mode. Next, we consider effects that are of second order in the long mode. A gradient mode Φ = qṡx generated in Single-field inflation is shown to induce an observable quadrupole moment. For instance, in a matter-dominated model it is equal to Q = 5(qṡx)2/18. This quadrupole can be canceled by superposition of a quadratic perturbation. The result is shown to be a nonlinear extension of Weinberg's adiabatic modes: a long-wavelength physical mode which looks locally like a coordinate transformation.

  2. Joining of Tungsten Armor Using Functional Gradients

    International Nuclear Information System (INIS)

    The joining of low thermal expansion armor materials such as tungsten to high thermal expansion heat sink materials has been a major problem in plasma facing component (PFC) development. Conventional planar bonding techniques have been unable to withstand the high thermal induced stresses resulting from fabrication and high heat flux testing. During this investigation, innovative functional gradient joints produced using vacuum plasma spray forming techniques have been developed for joining tungsten armor to copper alloy heat sinks. A model was developed to select the optimum gradient architecture. Based on the modeling effort, a 2mm copper rich gradient was selected. Vacuum plasma pray parameters and procedures were then developed to produce the functional gradient joint. Using these techniques, dual cooling channel, medium scale mockups (32mm wide x 400mm length) were produced with vacuum plasma spray formed tungsten armor. The thickness of the tungsten armor was up to 5mm thick. No evidence of debonding at the interface between the heat sink and the vacuum plasma sprayed material was observed.

  3. Examining the Education Gradient in Chronic Illness

    Science.gov (United States)

    Chatterji, Pinka; Joo, Heesoo; Lahiri, Kajal

    2015-01-01

    We examine the education gradient in diabetes, hypertension, and high cholesterol. We take into account diagnosed as well as undiagnosed cases and use methods accounting for the possibility of unmeasured factors that are correlated with education and drive both the likelihood of having illness and the propensity to be diagnosed. Data come from the…

  4. Natural equivalents of thermal gradient experiments

    Science.gov (United States)

    Rodríguez, Carmen; Geyer, Adelina; Castro, Antonio; Villaseñor, Antonio

    2015-06-01

    Crystallization experiments using the intrinsic thermal gradient in 10 mm length capsules loaded in piston-cylinder assemblies were used to investigate silicic magma crystallization. The application of experimental results to natural environments requires the scaling of physical parameters of petrological interest. Therefore, we propose here a comparative study between thermal gradients and numerical simulations of natural magma chambers. We use the Finite Element method to calculate thermal profiles across a cooling silicic magma chamber. These numerical profiles are compared with the intrinsic thermal structure of half-inch, piston-cylinder assemblies at 500 MPa. It is concluded that a set of varied magma chamber geometries and/or distinct stages of their cooling history can approach the intrinsic thermal structure of laboratory experiments. Once the thermal properties for magma and its host rock are fixed, the experimental-numerical approach is mostly dependent on the volume and aspect ratio of the magma chamber. Our results indicate, for instance, that a 10 mm length capsule with a thermal gradient of 40 °C/mm (from 1100 to 700 °C) may represent a 150-1100 m wide portion of a cooling magma chamber of 10-20 km diameter and 2-10 km height, emplaced at a depth of 18 km. Additional possible scenarios are represented by larger magma chambers, up to 30 km diameter, in which the experimental thermal gradient can represent a 150-3700 m-thin-section of the large igneous bodies.

  5. Ocean thermal gradient hydraulic power plant.

    Science.gov (United States)

    Beck, E J

    1975-07-25

    Solar energy stored in the oceans may be used to generate power by exploiting ploiting thermal gradients. A proposed open-cycle system uses low-pressure steam to elevate vate water, which is then run through a hydraulic turbine to generate power. The device is analogous to an air lift pump. PMID:17813707

  6. Instabilities in power law gradient hardening materials

    DEFF Research Database (Denmark)

    Niordson, Christian Frithiof; Tvergaard, Viggo

    2005-01-01

    Tension and compression instabilities are investigated for specimens with dimensions in the micron range. A finite strain generalization of a higher order strain gradient plasticity theory is implemented in a finite element scheme capable of modeling power law hardening materials. Effects...

  7. Annular beam with segmented phase gradients

    Directory of Open Access Journals (Sweden)

    Shubo Cheng

    2016-08-01

    Full Text Available An annular beam with a single uniform-intensity ring and multiple segments of phase gradients is proposed in this paper. Different from the conventional superposed vortices, such as the modulated optical vortices and the collinear superposition of multiple orbital angular momentum modes, the designed annular beam has a doughnut intensity distribution whose radius is independent of the phase distribution of the beam in the imaging plane. The phase distribution along the circumference of the doughnut beam can be segmented with different phase gradients. Similar to a vortex beam, the annular beam can also exert torques and rotate a trapped particle owing to the orbital angular momentum of the beam. As the beam possesses different phase gradients, the rotation velocity of the trapped particle can be varied along the circumference. The simulation and experimental results show that an annular beam with three segments of different phase gradients can rotate particles with controlled velocities. The beam has potential applications in optical trapping and optical information processing.

  8. On the Vertical Gradient in CO2

    Science.gov (United States)

    Stine, A. R.; Fung, I. Y.

    2008-12-01

    Attempts to constrain surface fluxes of carbon from atmospheric measurements of carbon dioxide have primarily focused on surface boundary layer measurements, because information about surface fluxes is least diluted close to the locations where the fluxes occur. However, errors in model ventilation of air in the vertical can be misinterpreted as local surface fluxes. Satellites which measure column integrated CO2 are expected to represent a major advance in part because they observe the entire atmospheric column. Recent work has highlighted the fact that vertical gradients in carbon concentrations can give us information about where vertical mixing errors are likely to be misinterpreted as local surface fluxes, but passive tracer evidence suggests that models that capture vertical profiles on the ocean do poorly on the land (and vice versa), suggesting that the problem of correctly treating vertical mixing in inverse studies is more fundamental than picking the "best" model. We consider observations of the vertical gradient in CO2 from aircrafts and from a comparison of satellites that observe in the near infrared (which observe the column integrated CO2 field) and the thermal infrared (which observe the upper troposphere). We evaluate the feasibility of using these satellites for determining the vertical gradient in CO2. We examine how observations of the vertical gradient of CO2 allow us to differentiate the imprint of vertical mixing and the imprint in surface fluxes on the observed field of atmospheric CO2.

  9. Conformally Coupled Induced Gravity with Gradient Torsion

    OpenAIRE

    Yoon, Yongsung

    1999-01-01

    It is found that conformally coupled induced gravity with gradient torsion gives a dilaton gravity in Riemann geometry. In the Einstein frame of the dilaton gravity the conformal symmetry is hidden and a non-vanishing cosmological constant is not plausible due to the constraint of the conformal coupling.

  10. Gradient dynamics and entropy production maximization

    CERN Document Server

    Janečka, Adam

    2016-01-01

    Gradient dynamics describes irreversible evolution by means of a dissipation potential, which leads to several advantageous features like Maxwell--Onsager relations, distinguishing between thermodynamic forces and fluxes or geometrical interpretation of the dynamics. Entropy production maximization is a powerful tool for predicting constitutive relations in engineering. In this paper, both approaches are compared and their shortcomings and advantages are discussed.

  11. Lactate uptake against a concentration gradient

    DEFF Research Database (Denmark)

    Nordström, Carl-Henrik; Nielsen, Troels Halfeld; Nielsen, Hans Boye

    2014-01-01

    ]) concludes that lactate may be transported across the blood brain barrier into the brain against a concentration gradient. Unfortunately the authors have misinterpreted the concept of analytical imprecision and their conclusion is based on analytical artifact. As the topic of lactate transport into the brain...

  12. GPS, GNSS, and Ionospheric Density Gradients

    Science.gov (United States)

    Kintner, P. M.; O'Hanlon, B.; Humphreys, T. E.

    2009-12-01

    Ionospheric density and density gradients affect GNSS signals in two ways. They can introduce ranging errors or irregularities that form on the density gradients producing scintillation. Here we focus on the issue of ranging errors. There are two approaches to mitigating ranging errors produced by ionospheric density gradients which can be 20-30 m during major magnetic storms. The first approach is to use a reference receiver(s) to determine the ionospheric contribution to ranging errors. The ranging error is then transmitted to the user for correction within the mobile receiver. This approach is frequently referred to as differential GPS and, when multiple reference receivers are used, the system is referred to as an augmentation system. This approach is vulnerable to ionospheric gradients depending on the reference receiver spacing(s) and latency in applying the correction within the mobile receiver. The second approach is to transmit navigation signals at two frequencies and then use the relative delay between the two signals to both estimate the ranging error and calculate the correct range. Currently the dual frequency technique is used by US military receivers with an encryption key and some civilian receivers which must be stationary and average over times long compared to those required for navigation. However, the technology of space based radio navigation is changing. GPS will soon be a system with three frequencies and multiple codes. Furthermore Europe, Russia, and China are developing independent systems to complement and compete with GPS while India and Japan are developing local systems to enhance GPS performance in their regions. In this talk we address two questions. How do density gradients affect augmentation systems including the social consequences and will the new GPS/GNSS systems with multiple civilian frequencies be able to remove ionospheric errors. The answers are not at all clear.

  13. Detection of Rifampin Resistance in Mycobacterium tuberculosis by Double Gradient-Denaturing Gradient Gel Electrophoresis

    Science.gov (United States)

    Scarpellini, Paolo; Braglia, Sergio; Carrera, Paola; Cedri, Maura; Cichero, Paola; Colombo, Alessia; Crucianelli, Rosella; Gori, Andrea; Ferrari, Maurizio; Lazzarin, Adriano

    1999-01-01

    We applied double gradient-denaturing gradient gel electrophoresis (DG-DGGE) for the rapid detection of rifampin (RMP) resistance from rpoB PCR products of Mycobacterium tuberculosis isolates and clinical samples. The results of this method were fully concordant with those of DNA sequencing and susceptibility testing analyses. DG-DGGE is a valid alternative to the other methods of detecting mutations for predicting RMP resistance. PMID:10508043

  14. Effect of Elongation on Critical Gradient for Toroidal Electron Temperature Gradient Modes

    Institute of Scientific and Technical Information of China (English)

    PENG Li-Li; GAO Zhe

    2008-01-01

    The electron temperature gradient mode is investigated in elongated toroidal plasmas with a gyrokinetic integral eigenmode equation code. Dependence of the critical electron temperature gradient on the elongation is calculated.It is found that when the elongation increases, the growth rate spectrum is greatly shifted towards shorter poloidal wavelength, and then the poloidal wavenumber at which the mode is destabilizing critically in elongated plasmas will be larger than that in circular plasmas.

  15. Temperature gradients drive mechanical energy gradients in the flight muscle of Manduca sexta.

    Science.gov (United States)

    George, N T; Sponberg, S; Daniel, T L

    2012-02-01

    A temperature gradient throughout the dominant flight muscle (dorsolongitudinal muscle, DLM(1)) of the hawkmoth Manduca sexta, together with temperature-dependent muscle contractile rates, demonstrates that significant spatial variation in power production is possible within a single muscle. Using in situ work-loop analyses under varying muscle temperatures and phases of activation, we show that regional differences in muscle temperature will induce a spatial gradient in the mechanical power output throughout the DLM(1). Indeed, we note that this power gradient spans from positive to negative values across the predicted temperature range. Warm ventral subunits produce positive power at their in vivo operating temperatures, and therefore act as motors. Concurrently, as muscle temperature decreases dorsally, the subunits produce approximately zero mechanical power output, acting as an elastic energy storage source, and negative power output, behaving as a damper. Adjusting the phase of activation further influences the temperature sensitivity of power output, significantly affecting the mechanical power output gradient that is expressed. Additionally, the separate subregions of the DLM(1) did not appear to employ significant physiological compensation for the temperature-induced differences in power output. Thus, although the components of a muscle are commonly thought to operate uniformly, a significant within-muscle temperature gradient has the potential to induce a mechanical power gradient, whereby subunits within a muscle operate with separate and distinct functional roles.

  16. STUDY ON A HYDROPHOBIC-HYDROPHILIC GRADIENT ROD

    Institute of Scientific and Technical Information of China (English)

    Jun Ma; Bai-yu Li; Hai-yun Liu; Zhi-min Zheng; Jian Xu

    2004-01-01

    A hydrophobic-hydrophilic gradient rod with a length of 40 mm and a diameter of 3 mm was prepared by heating a polymethylsilsesquioxane rod in a cylindrical stove with temperature gradient. The rod was thus pyrolyzed under a temperature gradient condition. The organic end of the gradient rod appears hydrophobic with a contact angle of 109.9° while the other end is hydrophilic with a contact angle of 62.4°. The gradient chemical structure and the gradient microstructure along the rod were characterized by FTIR and SEM, respectively.

  17. Sequential pattern formation governed by signaling gradients

    CERN Document Server

    Jörg, David J; Jülicher, Frank

    2016-01-01

    Rhythmic and sequential segmentation of the embryonic body plan is a vital developmental patterning process in all vertebrate species. However, a theoretical framework capturing the emergence of dynamic patterns of gene expression from the interplay of cell oscillations with tissue elongation and shortening and with signaling gradients, is still missing. Here we show that a set of coupled genetic oscillators in an elongating tissue that is regulated by diffusing and advected signaling molecules can account for segmentation as a self-organized patterning process. This system can form a finite number of segments and the dynamics of segmentation and the total number of segments formed depend strongly on kinetic parameters describing tissue elongation and signaling molecules. The model accounts for existing experimental perturbations to signaling gradients, and makes testable predictions about novel perturbations. The variety of different patterns formed in our model can account for the variability of segmentatio...

  18. Phenotypic character gradient variation of Melia azedarach

    Institute of Scientific and Technical Information of China (English)

    CHENG Shiming; GU Wanchun

    2007-01-01

    Canonical Correlation Analysis (CCA) was applied on the research data of five geographical-climatic factors and 18 phenotypic characters of 729 trees of 24 populations of Melia azedarach distributed in China.The eigenvalue of the first canonical variable is 0.997 9 (significant at 0.01 level),accounting for 78% of all eigenvalues.A study on the principal component analysis (PCA) was done,taking the first canonical variable coordinate values as the phenotypic character gradient axes (PCGA).The isogram of the PCGA was drawn out with 0.2 contours,which showed a geographical model with a northeast-southwest variation trend of the phenotypic characters of M.azedarach.Meanwhile,the path analysis results show the direct and indirect effects of phenotypic characters with phenotypic character gradient values,which prove that the propagative organs,are steadily changing.

  19. Model predictive control for wind power gradients

    DEFF Research Database (Denmark)

    Hovgaard, Tobias Gybel; Boyd, Stephen; Jørgensen, John Bagterp

    2015-01-01

    We consider the operation of a wind turbine and a connected local battery or other electrical storage device, taking into account varying wind speed, with the goal of maximizing the total energy generated while respecting limits on the time derivative (gradient) of power delivered to the grid. We...... ranges. The system dynamics are quite non-linear, and the constraints and objectives are not convex functions of the control inputs, so the resulting optimal control problem is difficult to solve globally. In this paper, we show that by a novel change of variables, which focuses on power flows, we can...... wind data and modern wind forecasting methods. The simulation results using real wind data demonstrate the ability to reject the disturbances from fast changes in wind speed, ensuring certain power gradients, with an insignificant loss in energy production....

  20. Gradient evolution for potential vorticity flows

    Directory of Open Access Journals (Sweden)

    S. Balasuriya

    2001-01-01

    Full Text Available Two-dimensional unsteady incompressible flows in which the potential vorticity (PV plays a key role are examined in this study, through the development of the evolution equation for the PV gradient. For the case where the PV is conserved, precise statements concerning topology-conservation are presented. While establishing some intuitively well-known results (the numbers of eddies and saddles is conserved, other less obvious consequences (PV patches cannot be generated, some types of Lagrangian and Eulerian entities are equivalent are obtained. This approach enables an improvement on an integrability result for PV conserving flows (if there were no PV patches at time zero, the flow would be integrable. The evolution of the PV gradient is also determined for the nonconservative case, and a plausible experiment for estimating eddy diffusivity is suggested. The theory is applied to an analytical diffusive Rossby wave example.

  1. Electron profile stiffness and critical gradient studies

    Science.gov (United States)

    DeBoo, J. C.; Petty, C. C.; White, A. E.; Burrell, K. H.; Doyle, E. J.; Hillesheim, J. C.; Holland, C.; McKee, G. R.; Rhodes, T. L.; Schmitz, L.; Smith, S. P.; Wang, G.; Zeng, L.

    2012-08-01

    Electron profile stiffness was studied in DIII-D L-mode discharges by systematically varying the heat flux in a narrow region with electron cyclotron heating and measuring the local change produced in ∇Te. Electron stiffness was found to slowly increase with toroidal rotation velocity. A critical inverse temperature gradient scale length 1/LC ˜ 3 m-1 was identified at ρ =0.6 and found to be independent of rotation. Both the heat pulse diffusivity and the power balance diffusivity, the latter determined by integrating the measured dependence of the heat pulse diffusivity on -∇Te, were fit reasonably well by a model containing a critical inverse temperature gradient scale length and varying linearly with 1/LT above the threshold.

  2. Temperature gradient driven lasing and stimulated cooling

    CERN Document Server

    Sandner, K

    2012-01-01

    A laser can be understood as thermodynamic engine converting heat to a coherent single mode field close to Carnot efficiency. From this perspective spectral shaping of the excitation light generates a higher effective temperature on the pump than on the gain transition. Here, using a toy model of a quantum well structure with two suitably designed tunnel-coupled wells kept at different temperature, we study a laser operated on an actual spatial temperature gradient between pump and gain region. We predict gain and narrow band laser emission for a sufficient temperature gradient and resonator quality. Lasing appears concurrent with amplified heat flow and points to a new form of stimulated solid state cooling. Such a mechanism could raise the operating temperature limit of quantum cascade lasers by substituting phonon emission driven injection, which generates intrinsic heat, by an extended model with phonon absorption steps.

  3. Automated apparatus for producing gradient gels

    Science.gov (United States)

    Anderson, N.L.

    1983-11-10

    Apparatus for producing a gradient gel which serves as a standard medium for a two-dimensional analysis of proteins, the gel having a density gradient along its height formed by a variation in gel composition, with the apparatus including first and second pumping means each including a plurality of pumps on a common shaft and driven by a stepping motor capable of providing small incremental changes in pump outputs for the gel ingredients, the motors being controlled, by digital signals from a digital computer, a hollow form or cassette for receiving the gel composition, means for transferring the gel composition including a filler tube extending near the bottom of the cassette, adjustable horizontal and vertical arms for automatically removing and relocating the filler tube in the next cassette, and a digital computer programmed to automatically control the stepping motors, arm movements, and associated sensing operations involving the filling operation.

  4. Background field method in the gradient flow

    CERN Document Server

    Suzuki, Hiroshi

    2015-01-01

    The Yang--Mills gradient flow and its extension to the fermion field provide a very general method to obtain renormalized observables in gauge theory. The method is applicable also with non-perturbative regularization such as lattice. The gradeint flow thus offers useful probes to study non-perturbative dynamics of gauge theory. In this work, aiming at possible simplification in perturbative calculations associated with the gradient flow, a modification of the gauge-fixed version of the flow equation, which preserves gauge covariance under the background gauge transformation, is proposed. This formulation allows for example a very quick one-loop calculation of the small flow time expansion of a composite operator that is relevant to the construction of a lattice energy--momentum tensor. Some details of the calculation, which have not been given elsewhere, are presented.

  5. Fracture driven by a Thermal Gradient

    CERN Document Server

    Pla, O

    1995-01-01

    Motivated by recent experiments by Yuse and Sano (Nature, 362, 329 (1993)), we propose a discrete model of linear springs for studying fracture in thin and elastically isotropic brittle films. The method enables us to draw a map of the stresses in the material. Cracks generated by the model, imposing a moving thermal gradient in the material, can branch or wiggle depending on the driving parameters. The results may be used to compare with other recent theoretical work, or to design future experiments.

  6. SPECTROSCOPIC GRADIENTS IN EARLY-TYPE GALAXIES

    Directory of Open Access Journals (Sweden)

    A. Buzzoni

    2009-01-01

    Full Text Available We review some relevant properties of the observed changes of H , Mg2, and Fei Lick indices across the surface of 25 bright elliptical galaxies. The impact of these spectroscopic gradients is brie y discussed, in the framework of the leading physical mechanisms that led to galaxy formation. In particular, three relevant evolutionary scenarios are sketched, each one able, in principle, to consistently match galaxy spectral properties and e ectively constrain the composing stellar populations in these systems.

  7. Fluorescence correlation spectroscopy in laser gradient field

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    Fluorescence correlation spectroscopy (FCS) is capable of probing dynamic processes in living biological systems. From photon fluctuation of fluorescing particles which diffuse through a small detection volume, FCS reveals information on the concentration and the structure of the particles, as well as information on microscopic environment.In this note, we study the radiation forces experienced by Rayleigh particles in a laser field in details, and analyze the effects of gradient field on FCS measurements.

  8. Gradient Domain Mesh Deformation - A Survey

    Institute of Scientific and Technical Information of China (English)

    Wei-Wei Xu; Kun Zhou

    2009-01-01

    This survey reviews the recent development of gradient domain mesh deformation method. Different to other deformation methods, the gradient domain deformation method is a surface-based, variational optimization method. It directly encodes the geometric details in differential coordinates, which are also called Laplacian coordinates in literature. By preserving the Laplacian coordinates, the mesh details can be well preserved during deformation. Due to the locality of the Laplacian coordinates, the variational optimization problem can be casted into a sparse linear system. Fast sparse linear solver can be adopted to generate deformation result interactively, or even in real-time. The nonlinear nature of gradient domain mesh deformation leads to the development of two categories of deformation methods: linearization methods and nonlinear optimization methods. Basically, the linearization methods only need to solve the linear least-squares system once. They are fast, easy to understand and control, while the deformation result might be suboptimal. Nonlinear optimization methods can reach optimal solution of deformation energy function by iterative updating. Since the computation of nonlinear methods is expensive, reduced deformable models should be adopted to achieve interactive performance. The nonlinear optimization methods avoid the user burden to input transformation at deformation handles, and they can be extended to incorporate various nonlinear constraints, like volume constraint, skeleton constraint, and so on. We review representative methods and related approaches of each category comparatively and hope to help the user understand the motivation behind the algorithms. Finally, we discuss the relation between physical simulation and gradient domain mesh deformation to reveal why it can achieve physically plausible deformation result.

  9. CERN/KEK: Very high accelerating gradients

    International Nuclear Information System (INIS)

    Full text: A world-wide effort is under way to develop linear electron-positron colliders so that physics experiments can be extended into a range of energies where circular machines (necessarily much larger than CERN's 27-kilometre LEP machine) would be crippled by synchrotron radiation. CERN is studying the feasibility of building a 2 TeV machine called CLIC powered not by individual klystrons, but by a high intensity electron 'drive' linac running parallel to the main linac (November 1990, page 7). This drive linac will itself be powered by similar superconducting cavities to those developed for LEP. A high gradient is an obvious design aim for any future high energy linear collider because it makes it shorter and therefore cheaper - the design figure for the CLIC machine is 80 MV/m. The CLIC study group has taken a significant step forward in demonstrating the technical feasibility of their machine by achieving peak and average accelerating gradients of 137 MV/m and 84 MV/m respectively in a short section of accelerating structure during high gradient tests at the Japanese KEK Laboratory last year. This result obtained within the framework of a CERN/KEK collaboration on linear colliders was obtained using a 20-cell accelerating section built at CERN using state-of the- art technology which served both as a model for CLIC studies as well as a prototype for the Japanese Linear Collider studies. The operating frequency of the model accelerating section is 2.6 times lower than the CLIC frequency but was chosen because a high power r.f. source and pulse compression scheme has been developed for this frequency at KEK. Testing CLIC models at 11.4 GHz is however more stringent than at 30 GHz because the chance of electrical breakdown increases as the frequency is lowered. This recent result clearly demonstrates that a gradient of 80 MV/m is feasible

  10. Optimization of ceramic strength using elastic gradients

    OpenAIRE

    Zhang, Yu; Ma, Li

    2009-01-01

    We present a new concept for strengthening ceamics by utilizing a graded structure with a low elastic modulus at both top and bottom surfaces sandwiching a high-modulus interior. Closed-form equations have been developed for stress analysis of simply supported graded sandwich beams subject to transverse center loads. Theory predicts that suitable modulus gradients at the ceramic surface can effectively reduce and spread the maximum bending stress from the surface into the interior. The magnit...

  11. Intergenerational and Socioeconomic Gradients of Child Obesity

    OpenAIRE

    Joan Costa-Fonta; Joan Gil

    2012-01-01

    Can the rise in obesity among children be attributed to intergenerationally parental influences? How important is a parent’s socioeconomic status in accounting for the emergence of obesity among children? This paper documents evidence of an emerging social gradient of obesity in pre-school children resulting from a combination of income and education effects, as well as less intensive childcare associated with maternal employment, when different forms of intergenerational transmission are con...

  12. Implementing CAIA Delay-Gradient in Linux

    OpenAIRE

    Jonassen, Kenneth Klette

    2015-01-01

    We have implemented and evaluated an independent implementation of the CAIA Delay-Gradient congestion control in the Linux operating system. We made several adjustments or improvements to the design of CDG in our implementation. We have found sources of noise in the FreeBSD implementation of CDG. We identified areas of improvement to Linux' RTT measurements for congestion control. Our results indicate that our Linux implementation can compete effectively, and that it may operate more effectiv...

  13. Fixed-Field Alternating-Gradient Accelerators

    CERN Document Server

    Sheehy, S L

    2016-01-01

    These notes provide an overview of Fixed-Field Alternating-Gradient (FFAG) accelerators for medical applications. We begin with a review of the basic principles of this type of accelerator, including the scaling and non-scaling types, highlighting beam dynamics issues that are of relevance to hadron ac- celerators. The potential of FFAG accelerators in the field of hadron therapy is discussed in detail, including an overview of existing medical FFAG designs. The options for FFAG treatment gantries are also considered.

  14. Discontinuous gradient constraints and the infinity Laplacian

    CERN Document Server

    Juutinen, Petri; Rossi, Julio D

    2012-01-01

    Motivated by tug-of-war games and asymptotic analysis of certain variational problems, we consider a gradient constraint problem involving the infinity Laplace operator. We prove that this problem always has a solution that is unique if a certain regularity condition on the constraint is satisfied. If this regularity condition fails, then solutions obtained from game theory and $L^p$-approximation need not coincide.

  15. Broadband mode conversion via gradient index metamaterials.

    Science.gov (United States)

    Wang, HaiXiao; Xu, YaDong; Genevet, Patrice; Jiang, Jian-Hua; Chen, HuanYang

    2016-04-21

    We propose a design for broadband waveguide mode conversion based on gradient index metamaterials (GIMs). Numerical simulations demonstrate that the zeroth order of transverse magnetic mode or the first order of transverse electric mode (TM0/TE1) can be converted into the first order of transverse magnetic mode or the second order of transverse electric mode (TM1/TE2) for a broadband of frequencies. As an application, an asymmetric propagation is achieved by integrating zero index metamaterials inside the GIM waveguide.

  16. Intergenerational and socioeconomic gradients of childhood obesity

    OpenAIRE

    Costa-i-Font, Joan; Gil, Joan

    2013-01-01

    Can the rise in obesity among children be attributed to intergenerationally parental influences? How important is a parent’s socioeconomic status in accounting for the emergence of obesity among children? This paper documents evidence of an emerging social gradient of obesity in pre-school children resulting from a combination of income and education effects, as well as less intensive childcare associated with maternal employment, when different forms of intergenerational transmission are con...

  17. Dropwise condensation on a cold gradient substrate

    Science.gov (United States)

    Macner, Ashley; Daniel, Susan; Steen, Paul

    2012-11-01

    Distributions of drops that arise from dropwise condensation evolve by nucleation, growth, and coalescence of drops. An understanding of how surface-energy gradients applied to the substrate affect drop growth and coalescence is needed for design of effective surfaces for large-scale dropwise condensation. Transient dropwise condensation from a vapor phase onto a cold and chemically treated surface is reported. The surfaces were treated to deliver either a uniform contact-angle or a gradient of contact-angles by silanization. The time evolution of drop-size and number-density distributions is reported. For a typical condensation experiment, the drop distributions advance through two stages: an increase in drop density as a result of nucleation and a decrease in drop density as a result of larger scale coalescence events. Because the experiment is transient in nature, the shape of the distribution can be used to predict the number of drop generations and their stage of development. Preliminary results for gradient surfaces will be discussed and compared against observations of behavior on uniformly coated surfaces. NASA Space Technology Research Fellowship (NSTRF).

  18. Functional trait space and the latitudinal diversity gradient

    DEFF Research Database (Denmark)

    Lamanna, Christine; Blonder, Benjamin; Violle, Cyrille;

    2014-01-01

    The processes causing the latitudinal gradient in species richness remain elusive. Ecological theories for the origin of biodiversity gradients, such as competitive exclusion, neutral dynamics, and environmental filtering, make predictions for how functional diversity should vary at the alpha (wi...

  19. Conjugate Gradient Methods with Armijo-type Line Searches

    Institute of Scientific and Technical Information of China (English)

    Yu-Hong DAI

    2002-01-01

    Two Armijo-type line searches are proposed in this paper for nonlinear conjugate gradient methods.Under these line searches, global convergence results are established for several famous conjugate gradient method.

  20. Stability of non compact steady and expanding gradient Ricci solitons

    OpenAIRE

    Deruelle, Alix

    2014-01-01

    We study the stability of non compact steady and expanding gradient Ricci solitons. We first show that strict linear stability implies dynamical stability. Then we give various sufficient geometric conditions ensuring the strict linear stability of such gradient Ricci solitons.

  1. On a classification of the quasi Yamabe gradient solitons

    OpenAIRE

    Huang, Guangyue; Li, Haizhong

    2011-01-01

    In this paper, we introduce the concept of quasi Yamabe gradient solitons, which generalizes the concept of Yamabe gradient solitons. By using some ideas in [7,8], we prove that $n$-dimensional $(n\\geq3)$ complete quasi Yamabe gradient solitons with vanishing Weyl curvature tensor and positive sectional curvature must be rotationally symmetric. We also prove that any compact quasi Yamabe gradient solitons are of constant scalar curvature.

  2. Microfluidic generated EGF-gradients induce chemokinesis of transplantable retinal progenitor cells via the JAK/STAT and PI3kinase signaling pathways.

    Directory of Open Access Journals (Sweden)

    Uchenna J Unachukwu

    Full Text Available A growing number of studies are evaluating retinal progenitor cell (RPC transplantation as an approach to repair retinal degeneration and restore visual function. To advance cell-replacement strategies for a practical retinal therapy, it is important to define the molecular and biochemical mechanisms guiding RPC motility. We have analyzed RPC expression of the epidermal growth factor receptor (EGFR and evaluated whether exposure to epidermal growth factor (EGF can coordinate motogenic activity in vitro. Using Boyden chamber analysis as an initial high-throughput screen, we determined that RPC motility was optimally stimulated by EGF concentrations in the range of 20-400 ng/ml, with decreased stimulation at higher concentrations, suggesting concentration-dependence of EGF-induced motility. Using bioinformatics analysis of the EGF ligand in a retina-specific gene network pathway, we predicted a chemotactic function for EGF involving the MAPK and JAK-STAT intracellular signaling pathways. Based on targeted inhibition studies, we show that ligand binding, phosphorylation of EGFR and activation of the intracellular STAT3 and PI3kinase signaling pathways are necessary to drive RPC motility. Using engineered microfluidic devices to generate quantifiable steady-state gradients of EGF coupled with live-cell tracking, we analyzed the dynamics of individual RPC motility. Microfluidic analysis, including center of mass and maximum accumulated distance, revealed that EGF induced motility is chemokinetic with optimal activity observed in response to low concentration gradients. Our combined results show that EGFR expressing RPCs exhibit enhanced chemokinetic motility in the presence of low nanomole levels of EGF. These findings may serve to inform further studies evaluating the extent to which EGFR activity, in response to endogenous ligand, drives motility and migration of RPCs in retinal transplantation paradigms.

  3. Gradient Descent Bit Flipping Algorithms for Decoding LDPC Codes

    OpenAIRE

    Wadayama, Tadashi; Nakamura, Keisuke; Yagita, Masayuki; Funahashi, Yuuki; Usami, Shogo; Takumi, Ichi

    2007-01-01

    A novel class of bit-flipping (BF) algorithms for decoding low-density parity-check (LDPC) codes is presented. The proposed algorithms, which are called gradient descent bit flipping (GDBF) algorithms, can be regarded as simplified gradient descent algorithms. Based on gradient descent formulation, the proposed algorithms are naturally derived from a simple non-linear objective function.

  4. A numerical study of mixed parabolic-gradient systems

    NARCIS (Netherlands)

    Verwer, J.G.; Sommeijer, B.P.

    2000-01-01

    This paper is concerned with the numerical solution of parabolic equations coupled to gradient equations. The gradient equations are ordinary differential equations whose solutions define positions of particles in the spatial domain of the parabolic equations. The vector field of the gradient equati

  5. On gradient Ricci solitons with constant scalar curvature

    OpenAIRE

    Fernandez-Lopez, Manuel; Garcia-Rio, Eduardo

    2014-01-01

    We use the theory of isoparametric functions to investigate gradient Ricci solitons with constant scalar curvature. We show rigidity of gradient Ricci solitons with constant scalar curvature under some conditions on the Ricci tensor, which are all satisfied if the manifold is curvature homogeneous. This leads to a complete description of four- and six-dimensional Kaehler gradient Ricci solitons with constant scalar curvature.

  6. Damping of toroidal ion temperature gradient modes

    Energy Technology Data Exchange (ETDEWEB)

    Sugama, H. [National Inst. for Fusion Science, Toki, Gifu (Japan)

    1999-04-01

    The temporal evolution of linear toroidal ion temperature gradient (ITG) modes is studied based on a kinetic integral equation including an initial condition. It is shown how to evaluate the analytic continuation of the integral kernel as a function of a complex-valued frequency, which is useful for analytical and numerical calculations of the asymptotic damping behavior of the ITG mode. In the presence of the toroidal {nabla}B-curvature drift, the temporal dependence of the density and potential perturbations consists of normal modes and a continuum mode, which correspond to contributions from poles and from an integral along a branch cut, respectively, of the Laplace-transformed potential function of the complex-valued frequency. The normal modes have exponential time dependence with frequencies and growth rates determined by the dispersion relation while the continuum mode, which has a ballooning structure, shows a power law decay {proportional_to} t{sup -2} in the asymptotic limit, where t is the time variable. Therefore, the continuum mode dominantly describes the long-time asymptotic behavior of the density and potential perturbations for the stable system where all normal modes have negative growth rates. By performing proper analytic continuation for the homogeneous version of the kinetic integral equation, dependences of the normal modes` growth rate, real frequency, and eigenfunction on {eta}{sub i} (the ratio of the ion temperature gradient to the density gradient), k{sub {theta}} (the poloidal wavenumber), s (the magnetic shear parameter), and {theta}{sub k} (the ballooning angle corresponding to the minimum radial wavenumber) are numerically obtained for both stable and unstable cases. (author)

  7. Biogeochemistry of a temperate forest nitrogen gradient

    Science.gov (United States)

    Perakis, Steven S.; Sinkhorn, Emily R.

    2011-01-01

    Wide natural gradients of soil nitrogen (N) can be used to examine fundamental relationships between plant–soil–microbial N cycling and hydrologic N loss, and to test N-saturation theory as a general framework for understanding ecosystem N dynamics. We characterized plant production, N uptake and return in litterfall, soil gross and net N mineralization rates, and hydrologic N losses of nine Douglas-fir (Pseudotsuga menziesii) forests across a wide soil N gradient in the Oregon Coast Range (USA). Surface mineral soil N (0–10 cm) ranged nearly three-fold from 0.29% to 0.78% N, and in contrast to predictions of N-saturation theory, was linearly related to 10-fold variation in net N mineralization, from 8 to 82 kg N·ha−1·yr−1. Net N mineralization was unrelated to soil C:N, soil texture, precipitation, and temperature differences among sites. Net nitrification was negatively related to soil pH, and accounted for −1·yr−1. Aboveground net primary production per unit net N mineralization varied inversely with soil N, suggesting progressive saturation of plant N demands at high soil N. Hydrologic N losses were dominated by dissolved organic N at low-N sites, with increased nitrate loss causing a shift to dominance by nitrate at high-N sites, particularly where net nitrification exceeded plant N demands. With the exception of N mineralization patterns, our results broadly support the application of the N-saturation model developed from studies of anthropogenic N deposition to understand N cycling and saturation of plant and microbial sinks along natural soil N gradients. This convergence of behavior in unpolluted and polluted forest N cycles suggests that where future reductions in deposition to polluted sites do occur, symptoms of N saturation are most likely to persist where soil N content remains elevated.

  8. Human impact gradient on mammalian biodiversity

    Directory of Open Access Journals (Sweden)

    Mariana Munguía

    2016-04-01

    Full Text Available Drastic changes have been caused by human influence in natural landscapes, which may exert an intensive effect on species loss. However, species loss from human pressure is not random but depends on a series of environmentally associated factors. Linking species traits to environmental attributes may allow us to detect the ecological impacts of habitat so that meaningful habitat degradation gradients can be identified. The relationships between environmental factors and species traits provide the basis for identifying those biological traits that make species more sensitive to disturbance. These relationships are also helpful to detect the geographic distribution of latent risk to reveal areas where biodiversity is threatened. Here, we identify a “Human Impact Gradient for Biodiversity (HIGB” based on a three-table ordination method (RLQ analysis and fourth-corner analysis to identify key species traits that are associated with environmental gradient. Species distribution and environmental geographic data were gathered nationwide to analyze 68 localities, which represent 27% of Mexico’s surface, including 211 species of mammals. Nine environmental variables (including biophysical, geophysical and land-use impacts were analyzed by using the Geographic Information System. Three types of species’ traits were evaluated: locomotion, trophic habit and body size. We identified a human impact gradient, which was mainly determined by the percentage of the area that was covered by seedlings, the plant richness, the understory coverage percentage and the human settlement index. The most important species traits that are associated with non-human-impacted sites were carnivores, frugivores–herbivores and a body size that was greater than 17.8 kg; 25 species were selected by the decision criteria framework for species that were sensitive to degradation based on ecological function information. Conversely, granivores, fossorial and semifossorial

  9. Stereo vision with distance and gradient recognition

    Science.gov (United States)

    Kim, Soo-Hyun; Kang, Suk-Bum; Yang, Tae-Kyu

    2007-12-01

    Robot vision technology is needed for the stable walking, object recognition and the movement to the target spot. By some sensors which use infrared rays and ultrasonic, robot can overcome the urgent state or dangerous time. But stereo vision of three dimensional space would make robot have powerful artificial intelligence. In this paper we consider about the stereo vision for stable and correct movement of a biped robot. When a robot confront with an inclination plane or steps, particular algorithms are needed to go on without failure. This study developed the recognition algorithm of distance and gradient of environment by stereo matching process.

  10. Laser pulse shaping for high gradient accelerators

    Science.gov (United States)

    Villa, F.; Anania, M. P.; Bellaveglia, M.; Bisesto, F.; Chiadroni, E.; Cianchi, A.; Curcio, A.; Galletti, M.; Di Giovenale, D.; Di Pirro, G.; Ferrario, M.; Gatti, G.; Moreno, M.; Petrarca, M.; Pompili, R.; Vaccarezza, C.

    2016-09-01

    In many high gradient accelerator schemes, i.e. with plasma or dielectric wakefield induced by particles, many electron pulses are required to drive the acceleration of one of them. Those electron bunches, that generally should have very short duration and low emittance, can be generated in photoinjectors driven by a train of laser pulses coming inside the same RF bucket. We present the system used to shape and characterize the laser pulses used in multibunch operations at Sparc_lab. Our system gives us control over the main parameter useful to produce a train of up to five high brightness bunches with tailored intensity and time distribution.

  11. Gradient-index optics fundamentals and applications

    CERN Document Server

    Gomez-Reino, Carlos; Bao, Carmen

    2010-01-01

    Gradient-Index (GRIN) optics provides a comprehensive and thorough treatment on fundamentals and applications of light propagation through inhomogeneous media. The book can be used both as a classroom text for students in physics and engineering and as a reference for specialists. A description of the phenomena, components and technology used in GRIN Optics are presented. The relationship to lenses, waveguides, optical connections, spatial solitons and vision is demonstrated. Applications of GRIN components and hybrid structures for optical connections, optical sensing and Talbot effect are analyzed.

  12. The educational gradient in coronary heart disease

    DEFF Research Database (Denmark)

    Ariansen, Inger; Mortensen, Laust Hvas; Igland, Jannicke;

    2015-01-01

    BACKGROUND: Independently of cardiovascular disease (CVD) risk factors, cognitive ability may account for some of the excess risk of coronary heart disease (CHD) associated with lower education. We aimed to assess how late adolescence cognitive ability and midlife CVD risk factors are associated...... with the educational gradient in CHD in Norway. METHODS: In a cohort of 57 279 men born during 1949-1959, health survey information was linked to military conscription records of cognitive ability, to national educational data, to hospitalisation records from the Cardiovascular Disease in Norway (CVDNOR) project...

  13. A Compact High Gradient Pulsed Magnetic Quadrupole

    CERN Document Server

    Shuman, Derek; Kireeff Covo, Michel; Ritchie, Gary; Seidl, Peter

    2005-01-01

    A design for a high gradient, low inductance pulsed quadrupole magnet is presented. The magnet is a circular current dominated design with a circular iron return yoke. Features include a five turn eddy current compensated solid conductor coil design which theoretically eliminates the first four higher order multipole field components, a single layer "non-spiral bedstead" coil design which both minimizes utilization of radial space and maximizes utilization of axial space, and allows incorporation of steering and correction coils within existing radial space. The coils are wound and stretched straight in a special winder, then bent in simple fixtures to form the upturned ends, simplifying fabrication and assembly.

  14. Mass balance gradients and climatic change

    OpenAIRE

    Oerlemans, J.; Hoogendoorn, N.C.

    1989-01-01

    It is generally assumed that the mass-balance gradient on glaciers is more or less conserved under climatic change. In studies of the dynamic response of glaciers to climatic change, one of the following assumptions is normally made: (i) the mass-balance perturbation is independent of altitude or (ii) the mass-balance profile does not change - it simply shifts up and down. Observational evidence for such an approach is not convincing; on some glaciers the inter-annual changes in mass balance ...

  15. Online Learning, Stability, and Stochastic Gradient Descent

    CERN Document Server

    Poggio, Tomaso; Rosasco, Lorenzo

    2011-01-01

    In batch learning, stability together with existence and uniqueness of the solution corresponds to well-posedness of Empirical Risk Minimization (ERM) methods; recently, it was proved that CV_loo stability is necessary and sufficient for generalization and consistency of ERM. In this note, we introduce CV_on stability, which plays a similar note in online learning. We show that stochastic gradient descent (SDG) with the usual hypotheses is CVon stable and we then discuss the implications of CV_on stability for convergence of SGD.

  16. Latitudinal gradients in intraspecific ecological diversity

    OpenAIRE

    Araújo, Márcio S.; Costa-Pereira, Raul

    2013-01-01

    The increase in the number of species with decreasing latitude is a striking pattern of global biodiversity. An important feature of studies of this pattern up to now has been the focus on species as the fundamental unit of interest, neglecting potential within-species ecological diversity. Here, we took a new perspective on this topic by measuring the degree to which individuals within populations differ in niche attributes across a latitudinal gradient (range: 54.01° S to 69.12° N). We show...

  17. Polyakov loop renormalization with gradient flow

    OpenAIRE

    Petreczky, Peter; Schadler, Hans-Peter

    2015-01-01

    We propose to use the gradient flow for the renormalization of Polyakov loops in various representations. We study Polyakov loops in 2+1 flavor QCD using the HISQ action and lattices with temporal extents $N_\\tau$=6, 8, 10 and 12 in various representations, including fundamental, sextet, adjoint, decuplet, 15-plet and 27-plet. This alternative renormalization procedure allows for the renormalization over a large temperature range from $T$=100 MeV - 800 MeV, with small errors not only for the ...

  18. Polyakov loop renormalization with gradient flow

    CERN Document Server

    Petreczky, Peter

    2015-01-01

    We propose to use the gradient flow for the renormalization of Polyakov loops in various representations. We study Polyakov loops in 2+1 flavor QCD using the HISQ action and lattices with temporal extents $N_\\tau$=6, 8, 10 and 12 in various representations, including fundamental, sextet, adjoint, decuplet, 15-plet and 27-plet. This alternative renormalization procedure allows for the renormalization over a large temperature range from $T$=100 MeV - 800 MeV, with small errors not only for the fundamental, but also for the higher representations of the Polyakov loop. We discuss the results of this procedure and Casimir scaling of the Polyakov loop.

  19. Role of the vertical pressure gradient in wave boundary layers

    DEFF Research Database (Denmark)

    Jensen, Karsten Lindegård; Sumer, B. Mutlu; Vittori, Giovanna;

    2014-01-01

    By direct numerical simulation (DNS) of the flow in an oscillatory boundary layer, it is possible to obtain the pressure field. From the latter, the vertical pressure gradient is determined. Turbulent spots are detected by a criterion involving the vertical pressure gradient. The vertical pressure...... gradient is also treated as any other turbulence quantity like velocity fluctuations and statistical properties of the vertical pressure gradient are calculated from the DNS data. The presence of a vertical pressure gradient in the near bed region has significant implications for sediment transport....

  20. A substrate independent approach for generation of surface gradients

    International Nuclear Information System (INIS)

    Recently, surface gradients have attracted significant interest for various research and technological applications. In this paper, we report a facile and versatile method for generating surface gradients of immobilized nanoparticles, nanotopography and ligands that is independent from the substrate material. The method consists of first depositing a functional polymer layer on a substrate and subsequent time controlled immersion of this functionalized substrate in solution gold nanoparticles (AuNPs), silver nanoparticles (AgNPs) or poly (styrenesulfonate) (PSS). Chemical characterization by X-ray Photoelectron Spectroscopy (XPS) and morphological analysis by Atomic Force Microscopy (AFM) show that the density of nanoparticles and the concentration of PSS across the surface increases in a gradient manner. As expected, time of immersion determines the concentration of surface bound species. We also demonstrate the generation of surface gradients of pure nanotopography. This is achieved by depositing a 5 nm thick plasma polymer layer on top of the number density gradient of nanoparticles to achieve a homogeneous surface chemistry. The surface independent approach for generation of surface gradients presented in this paper may open opportunities for a wider use of surface gradient in research and in various technologies. - Highlights: ► We present a substrate independent approach for generation of surface gradients. ► We demonstrate well-defined density gradients of gold and silver nanoparticles. ► We provide an example of pure surface nanotopography gradients. ► We demonstrate concentration gradients of bound ligands

  1. Spatial temperature gradients guide axonal outgrowth

    Science.gov (United States)

    Black, Bryan; Vishwakarma, Vivek; Dhakal, Kamal; Bhattarai, Samik; Pradhan, Prabhakar; Jain, Ankur; Kim, Young-Tae; Mohanty, Samarendra

    2016-07-01

    Formation of neural networks during development and regeneration after injury depends on accuracy of axonal pathfinding, which is primarily believed to be influenced by chemical cues. Recently, there is growing evidence that physical cues can play crucial role in axonal guidance. However, detailed mechanism involved in such guidance cues is lacking. By using weakly-focused near-infrared continuous wave (CW) laser microbeam in the path of an advancing axon, we discovered that the beam acts as a repulsive guidance cue. Here, we report that this highly-effective at-a-distance guidance is the result of a temperature field produced by the near-infrared laser light absorption. Since light absorption by extracellular medium increases when the laser wavelength was red shifted, the threshold laser power for reliable guidance was significantly lower in the near-infrared as compared to the visible spectrum. The spatial temperature gradient caused by the near-infrared laser beam at-a-distance was found to activate temperature-sensitive membrane receptors, resulting in an influx of calcium. The repulsive guidance effect was significantly reduced when extracellular calcium was depleted or in the presence of TRPV1-antagonist. Further, direct heating using micro-heater confirmed that the axonal guidance is caused by shallow temperature-gradient, eliminating the role of any non-photothermal effects.

  2. Infinite-Horizon Policy-Gradient Estimation

    CERN Document Server

    Bartlett, P L; 10.1613/jair.806

    2011-01-01

    Gradient-based approaches to direct policy search in reinforcement learning have received much recent attention as a means to solve problems of partial observability and to avoid some of the problems associated with policy degradation in value-function methods. In this paper we introduce GPOMDP, a simulation-based algorithm for generating a biased estimate of the gradient of the average reward in Partially Observable Markov Decision Processes POMDPs controlled by parameterized stochastic policies. A similar algorithm was proposed by (Kimura et al. 1995). The algorithm's chief advantages are that it requires storage of only twice the number of policy parameters, uses one free beta (which has a natural interpretation in terms of bias-variance trade-off), and requires no knowledge of the underlying state. We prove convergence of GPOMDP, and show how the correct choice of the parameter beta is related to the mixing time of the controlled POMDP. We briefly describe extensions of GPOMDP to controlled Markov chains,...

  3. Dropwise Condensation on a Radial Gradient Surface

    Science.gov (United States)

    Macner, Ashley; Daniel, Susan; Steen, Paul

    2013-11-01

    In transient dropwise condensation from steam onto a cool surface, distributions of drops evolve by nucleation, growth, and coalescence. This study examines how surface functionalization affects drop growth and coalescence. Surfaces are treated by silanization to deliver either a spatially uniform contact-angle (hydrophilic, neutral, and hydrophobic) or a radial gradient of contact-angles. The time evolution of number-density and associated drop-size distributions are reported. For a typical condensation experiment on a uniform angle surface, the number-density curves show two regimes: an initial increase in number-density as a result of nucleation and a subsequent decrease in number-density as a result of larger scale coalescence events. Without a removal mechanism, the fractional coverage, regardless of treatment, approaches unity. For the same angle-surface, the associated drop-size distributions progress through four different shapes along the growth curve. In contrast, for a radial gradient surface where removal by sweeping occurs, the number-density increases and then levels off to a value close to the maximum number-density that is well below unity coverage and only two shapes of distributions are observed. Implications for heat transfer will be discussed. This work was supported by a NASA Office of the Chief Technologist's Space Technology Research Fellowship.

  4. Optimization of ceramic strength using elastic gradients.

    Science.gov (United States)

    Zhang, Yu; Ma, Li

    2009-05-01

    We present a new concept for strengthening ceamics by utilizing a graded structure with a low elastic modulus at both top and bottom surfaces sandwiching a high-modulus interior. Closed-form equations have been developed for stress analysis of simply supported graded sandwich beams subject to transverse center loads. Theory predicts that suitable modulus gradients at the ceramic surface can effectively reduce and spread the maximum bending stress from the surface into the interior. The magnitude of such stress dissipation is governed by the thickness ratio of the beam to the graded layers. We test our concept by infiltrating both top and bottom surfaces of a strong class of zirconia ceramic with an in-house prepared glass of similar coefficient of thermal expansion and Poisson's ratio to zirconia, producing a controlled modulus gradient at the surface without significant long-range residual stresses. The resultant graded glass/zirconia/glass composite exhibits significantly higher load-bearing capacity than homogeneous zirconia. PMID:20161019

  5. Ultrafast Drop Movements Arising from Curvature Gradient

    CERN Document Server

    Lv, Cunjing; Chuang, Yin-Chuan; Tseng, Fan-Gang; Yin, Yajun; Zheng, Quanshui

    2011-01-01

    We report experimental observation of a kind of fast spontaneous movements of water drops on surfaces of cones with diameters from 0.1 to 1.5 mm. The observed maximum speed (0.22 m/s) under ambient conditions were at least two orders of magnitude higher than that resulting from any known single spontaneous movement mechanism, for example, Marangoni effect due to gradient of surface tension. We trapped even higher spontaneous movement speeds (up to 125 m/s) in virtual experiments for drops on nanoscale cones by using molecular dynamics simulations. The underlying mechanism is found to be universally effective - drops on any surface either hydrophilic or hydrophobic with varying mean curvature are subject to driving forces toward the gradient direction of the mean curvature. The larger the mean curvature of the surface and the lower the contact angle of the liquid are, the stronger the driving force will be. This discovery can lead to more effective techniques for transporting droplets.

  6. Regularized Multitask Learning for Multidimensional Log-Density Gradient Estimation.

    Science.gov (United States)

    Yamane, Ikko; Sasaki, Hiroaki; Sugiyama, Masashi

    2016-07-01

    Log-density gradient estimation is a fundamental statistical problem and possesses various practical applications such as clustering and measuring nongaussianity. A naive two-step approach of first estimating the density and then taking its log gradient is unreliable because an accurate density estimate does not necessarily lead to an accurate log-density gradient estimate. To cope with this problem, a method to directly estimate the log-density gradient without density estimation has been explored and demonstrated to work much better than the two-step method. The objective of this letter is to improve the performance of this direct method in multidimensional cases. Our idea is to regard the problem of log-density gradient estimation in each dimension as a task and apply regularized multitask learning to the direct log-density gradient estimator. We experimentally demonstrate the usefulness of the proposed multitask method in log-density gradient estimation and mode-seeking clustering.

  7. Experiments with Infinite-Horizon, Policy-Gradient Estimation

    CERN Document Server

    Bartlett, P L; Weaver, L; 10.1613/jair.807

    2011-01-01

    In this paper, we present algorithms that perform gradient ascent of the average reward in a partially observable Markov decision process (POMDP). These algorithms are based on GPOMDP, an algorithm introduced in a companion paper (Baxter and Bartlett, this volume), which computes biased estimates of the performance gradient in POMDPs. The algorithm's chief advantages are that it uses only one free parameter beta, which has a natural interpretation in terms of bias-variance trade-off, it requires no knowledge of the underlying state, and it can be applied to infinite state, control and observation spaces. We show how the gradient estimates produced by GPOMDP can be used to perform gradient ascent, both with a traditional stochastic-gradient algorithm, and with an algorithm based on conjugate-gradients that utilizes gradient information to bracket maxima in line searches. Experimental results are presented illustrating both the theoretical results of (Baxter and Bartlett, this volume) on a toy problem, and prac...

  8. Tracing the vertical composition of disc galaxies through colour gradients

    CERN Document Server

    De Grijs, R; Grijs, Richard de; Peletier, Reynier F.

    1999-01-01

    (Abbreviated) Optical observations of a statistically complete sample of edge-on disc galaxies are used to study the intrinsic vertical colour gradients in the galactic discs, to constrain the effects of population gradients, residual dust extinction and gradients in the galaxies' metal abundance. It appears that the intrinsic vertical colour gradients are either non-existent, or small and relatively constant as a function of position along the galaxies' major axes. Our results are consistent with the absence of any vertical colour gradient in the discs of the early-type sample galaxies. In most galaxies small-scale variations in the magnitude and even the direction of the vertical gradient are observed: at larger galactocentric distances they generally display redder colours with increasing z height, whereas the opposite is often observed in and near the galactic centres. For a significant fraction of our sample galaxies another mechanism in addition to the effects of stellar population gradients is required...

  9. Cell orientation gradients on an inverse opal substrate.

    Science.gov (United States)

    Lu, Jie; Zou, Xin; Zhao, Ze; Mu, Zhongde; Zhao, Yuanjin; Gu, Zhongze

    2015-05-20

    The generation of cell gradients is critical for understanding many biological systems and realizing the unique functionality of many implanted biomaterials. However, most previous work can only control the gradient of cell density and this has no effect on the gradient of cell orientation, which has an important role in regulating the functions of many connecting tissues. Here, we report on a simple stretched inverse opal substrate for establishing desired cell orientation gradients. It was demonstrated that tendon fibroblasts on the stretched inverse opal gradient showed a corresponding alignment along with the elongation gradient of the substrate. This "random-to-aligned" cell gradient reproduces the insertion part of many connecting tissues, and thus, will have important applications in tissue engineering.

  10. Correlation of pathogenesis of Toll-like receptor and chemotactic factor with lyme arthritis%Toll样受体和趋化因子与莱姆关节炎发病的相关性

    Institute of Scientific and Technical Information of China (English)

    汪玉娇; 宝福凯; 柳爱华

    2012-01-01

    莱姆病是一种由伯氏疏螺旋体引起,经蜱传播的自然疫源性疾病,也是一种人兽共患病,莱姆关节炎是莱姆病的晚期临床表现,严重者可终生致残,严重影响了人们的健康和生活质量,目前,对莱姆关节炎的致病机制尚不清楚,国内外已经取得了一系列进展,但有待进一步研究.现就Toll样受体和趋化因子与莱姆关节炎发病关系的研究做一综述.%Lyme disease, which is caused by Borrelia burgdorferi and spread by ticks, is a kind of natural foci disease and parasitic zoonoses. Lyme Arthritis is the late clinical manifestation of Lyme disease, it can make patients in lifelong disability in some severe cases and seriously affect healthy and life quality of patients. Until now, We still don't understand the pathogenic mechanism of Lyme Arthritis clearly, although there is a serious progress about it at home and aboard, further study on it is necessary. This article is intent to summarize the researches on relationship between Toll-like receptor, chemotactic factor and Lyme Arthritis.

  11. A universal equation for calculating the energy gradient function in the energy gradient theory

    CERN Document Server

    Dou, Hua-Shu

    2016-01-01

    The relationship for the energy variation, work done, and energy dissipation in unit volumetric fluid of incompressible flow is derived. A universal equation for calculating the energy gradient function is presented for situations where both pressure driven flow and shear driven flow are present simultaneously.

  12. Finite sample effect in temperature gradient focusing.

    Science.gov (United States)

    Lin, Hao; Shackman, Jonathan G; Ross, David

    2008-06-01

    Temperature gradient focusing (TGF) is a new and promising equilibrium gradient focusing method which can provide high concentration factors for improved detection limits in combination with high-resolution separation. In this technique, temperature-dependent buffer chemistry is employed to generate a gradient in the analyte electrophoretic velocity. By the application of a convective counter-flow, a zero-velocity point is created within a microchannel, at which location the ionic analytes accumulate or focus. In general, the analyte concentration is small when compared with buffer ion concentrations, such that the focusing mechanism works in the ideal, linearized regime. However, this presumption may at times be violated due to significant sample concentration growth or the use of a low-concentration buffer. Under these situations the sample concentration becomes non-negligible and can induce strong nonlinear interactions with buffer ions, which eventually lead to peak shifting and distortion, and the loss of detectability and resolution. In this work we combine theory, simulation, and experimental data to present a detailed study on nonlinear sample-buffer interactions in TGF. One of the key results is the derivation of a generalized Kohlrausch regulating function (KRF) that is valid for systems in which the electrophoretic mobilities are not constant but vary spatially. This generalized KRF greatly facilitates analysis, allowing reduction of the problem to a single equation describing sample concentration evolution, and is applicable to other problems with heterogeneous electrophoretic mobilities. Using this sample evolution equation we have derived an understanding of the nonlinear peak deformation phenomenon observed experimentally in TGF. We have used numerical simulations to validate our theory and to quantitatively predict TGF. Our simulation results demonstrate excellent agreement with experimental data, and also indicate that the proper inclusion of

  13. 'Thermal forces': colloids in temperature gradients

    Science.gov (United States)

    Piazza, Roberto

    2004-09-01

    In the presence of a thermal gradient, macromolecular solutes or dispersed particles drift to the cold or to the hot side: this effect is known as thermophoresis, and is the counterpart of particle suspensions of the Soret effect (or thermal diffusion) in simple fluid mixtures. Here I review recent experimental results on colloid thermophoresis and present new data suggesting a universal nature for the temperature dependence of thermophoresis in aqueous systems. There are strong analogies between thermophoresis in liquids and other thermally induced flow processes like gas thermal creep and membrane thermo-osmosis; starting from these, I present some guidelines for a general model of thermophoresis in disperse systems, accounting both for single-particle and collective effects.

  14. Dual-rail optical gradient echo memory

    CERN Document Server

    Higginbottom, Daniel B; Campbell, Geoff T; Hosseini, Mahdi; Cao, Ming Tao; Sparkes, Ben M; Bernu, Julian; Robins, Nick P; Lam, Ping Koy; Buchler, Ben C

    2016-01-01

    We introduce a scheme for the parallel storage of frequency separated signals in an optical memory and demonstrate that this dual-rail storage is a suitable memory for high fidelity frequency qubits. The two signals are stored simultaneously in the Zeeman-split Raman absorption lines of a cold atom ensemble using gradient echo memory techniques. Analysis of the split-Zeeman storage shows that the memory can be configured to preserve the relative amplitude and phase of the frequency separated signals. In an experimental demonstration dual-frequency pulses are recalled with 35% efficiency, 82% interference fringe visibility, and 6 degrees phase stability. The fidelity of the frequency-qubit memory is limited by frequency-dependent polarisation rotation and ambient magnetic field fluctuations, our analysis describes how these can be addressed in an alternative configuration.

  15. Radiation emitted by transverse-gradient undulators

    Science.gov (United States)

    Bernhard, Axel; Braun, Nils; Rodríguez, Verónica Afonso; Peiffer, Peter; Rossmanith, Robert; Widmann, Christina; Scheer, Michael

    2016-09-01

    Conventional undulators are used in synchrotron light sources to produce radiation with a narrow relative spectral width as compared to bending magnets or wigglers. The spectral width of the radiation produced by conventional undulators is determined by the number of undulator periods and by the energy spread and emittance of the electron beam. In more compact electron sources like for instance laser plasma accelerators the energy spread becomes the dominating factor. Due to this effect these electron sources cannot in general be used for high-gain free electron lasers (FELs). In order to overcome this limitation, modified undulator schemes, so-called transverse gradient undulators (TGUs), were proposed and a first superconducting TGU was built at Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany. In this paper simulations of the expected synchrotron radiation spectral distribution are presented. An experimental test with that device is under preparation at the laser wakefield accelerator at the JETI laser at the University of Jena, Germany.

  16. Eigen-Gradients for Traffic Sign Recognition

    Directory of Open Access Journals (Sweden)

    Sheila Esmeralda Gonzalez-Reyna

    2013-01-01

    Full Text Available Traffic sign detection and recognition systems include a variety of applications like autonomous driving, road sign inventory, and driver support systems. Machine learning algorithms provide useful tools for traffic sign identification tasks. However, classification algorithms depend on the preprocessing stage to obtain high accuracy rates. This paper proposes a road sign characterization method based on oriented gradient maps and the Karhunen-Loeve transform in order to improve classification performance. Dimensionality reduction may be important for portable applications on resource constrained devices like FPGAs; therefore, our approach focuses on achieving a good classification accuracy by using a reduced amount of attributes compared to some state-of-the-art methods. The proposed method was tested using German Traffic Sign Recognition Benchmark, reaching a dimensionality reduction of 99.3% and a classification accuracy of 95.9% with a Multi-Layer Perceptron.

  17. Adaptive Photon Mapping Based on Gradient

    Institute of Scientific and Technical Information of China (English)

    Chun-Meng Kang; Lu Wang; Yan-Ning Xu; Xiang-Xu Meng; Yuan-Jie Song

    2016-01-01

    Photon mapping can simulate some special effects efficiently such as shadows and caustics. Photon mapping runs in two phases: the photon map generating phase and the radiance estimation phase. In this paper, we focus on the bandwidth selection process in the second phase, as it can affect the final quality significantly. Poor results with noise arise if few photons are collected, while bias appears if a large number of photons are collected. In order to solve this issue, we propose an adaptive radiance estimation solution to obtain trade-offs between noise and bias by changing the number of neighboring photons and the shape of the collected area according to the radiance gradient. Our approach can be applied in both the direct and the indirect illumination computation. Finally, experimental results show that our approach can produce smoother quality while keeping the high frequency features perfectly compared with the original photon mapping algorithm.

  18. Nonlinear analysis of the gradient drift instability

    Science.gov (United States)

    González, Rafael; Vega, Matías de la

    An analytical study of the gradient drift instability in the equatorial electrojet of wavelengths in the order of one kilometer is presented. Different mechanisms, linear, non-local and turbulent, are found in the literature to explain the predominance of the 1 km wavelength in the electrojet. In the present work a simplified model is proposed in which the nonlinear evolution of three coupled modes is followed. By considering that one of the modes attains the stationary state, the evolution of the other two is obtained, and it is found that they follow equations of the Lotka-Volterra type. A stable stationary nonlinear solution for these equations is also found, and the conditions under which periodic solutions are possible are analyzed.

  19. Gravity Gradient Tensor Eigendecomposition for Spacecraft Positioning

    CERN Document Server

    Chen, Pei; Han, Chao

    2016-01-01

    In this Note, a new approach to spacecraft positioning based on GGT inversion is presented. The gravity gradient tensor is initially measured in the gradiometer reference frame (GRF) and then transformed to the Earth-Centered Earth-Fixed (ECEF) frame via attitude information as well as Earth rotation parameters. Matrix Eigen-Decomposition is introduced to directly translate GGT into position based on the fact that the eigenvalues and eigenvectors of GGT are simplespecific functions of spherical coordinates of the observation position. without the need of an initial position. Unlike the strategy of inertial navigation aiding, no prediction or first guess of the spacecraft position is needed. The method makes use of the J2 gravity model, and is suitable for space navigation where higher frequency terrain contributions to the GGT signals can be neglected.

  20. Passive Magnetic Shielding in Gradient Fields

    CERN Document Server

    Bidinosti, C P

    2013-01-01

    The effect of passive magnetic shielding on dc magnetic field gradients imposed by both external and internal sources is studied. It is found that for concentric cylindrical or spherical shells of high permeability material, higher order multipoles in the magnetic field are shielded progressively better, by a factor related to the order of the multipole. In regard to the design of internal coil systems for the generation of uniform internal fields, we show how one can take advantage of the coupling of the coils to the innermost magnetic shield to further optimize the uniformity of the field. These results demonstrate quantitatively a phenomenon that was previously well-known qualitatively: that the resultant magnetic field within a passively magnetically shielded region can be much more uniform than the applied magnetic field itself. Furthermore we provide formulae relevant to active magnetic compensation systems which attempt to stabilize the interior fields by sensing and cancelling the exterior fields clos...

  1. Toroidal electron temperature gradient drive drift modes

    International Nuclear Information System (INIS)

    The electron temperature gradient in tokamak geometry is shown to drive a short wavelength lower hybrid drift wave turbulence due to the unfavorable magnetic curvature on the outside of the torus. Ballooning mode theory is used to determine the stability regimes and the complex eigenfrequencies. At wavelengths of order the electron gyroradius the polarization is electrostatic and the growth rate is greater than the electron transit time aroud the torus. At longer wavelengths of order the collisionless skin depth the polarization is electromagnetic with electromagnetic vortices producing the dominant transport. The small scale electrostatic component of the turbulence produces a small by (m/sub e/m/sub i/)/sup 1/2/ drift wave anomalous transport of both the trapped and passing electrons while the c/ω/sub pe/ scale turbulene produces a neo-Alcator type transport from the stochastic diffusion of the trapped electrons. 15 refs., 5 figs

  2. Fano resonances from gradient-index metamaterials.

    Science.gov (United States)

    Xu, Yadong; Li, Sucheng; Hou, Bo; Chen, Huanyang

    2016-01-27

    Fano resonances - resonant scattering features with a characteristic asymmetric profile - have generated much interest, due to their extensive and valuable applications in chemical or biological sensors, new types of optical switches, lasers and nonlinear optics. They have been observed in a wide variety of resonant optical systems, including photonic crystals, metamaterials, metallic gratings and nanostructures. In this work, a waveguide structure is designed by employing gradient-index metamaterials, supporting strong Fano resonances with extremely sharp spectra. As the changes in the transmission spectrum originate from the interaction of guided modes from different channels, instead of resonance structures or metamolecules, the Fano resonances can be observed for both transverse electric and transverse magnetic polarizations. These findings are verified by fine agreement with analytical calculations and experimental results at microwave, as well as simulated results at near infrared frequencies.

  3. Observation of temperature-gradient-induced magnetization.

    Science.gov (United States)

    Hou, Dazhi; Qiu, Zhiyong; Iguchi, R; Sato, K; Vehstedt, E K; Uchida, K; Bauer, G E W; Saitoh, E

    2016-01-01

    Applying magnetic fields has been the method of choice to magnetize non-magnetic materials, but they are difficult to focus. The magneto-electric effect and voltage-induced magnetization generate magnetization by applied electric fields, but only in special compounds or heterostructures. Here we demonstrate that a simple metal such as gold can be magnetized by a temperature gradient or magnetic resonance when in contact with a magnetic insulator by observing an anomalous Hall-like effect, which directly proves the breakdown of time-reversal symmetry. Such Hall measurements give experimental access to the spectral spin Hall conductance of the host metal, which is closely related to other spin caloritronics phenomena such as the spin Nernst effect and serves as a reference for theoretical calculation. PMID:27457185

  4. Thermoacoustic mixture separation with an axial temperature gradient

    Energy Technology Data Exchange (ETDEWEB)

    Geller, Drew W [Los Alamos National Laboratory; Swift, Gregory A [Los Alamos National Laboratory

    2008-01-01

    The theory of thermoacoustic mixture separation is extended to include the effect of a nonzero axial temperature gradient. The analysis yields a new term in the second-order mole flux that is proportional to the temperature gradient and to the square of the volumetric velocity and is independent of the phasing of the wave. Because of this new term, thermoacoustic separation stops at a critical temperature gradient and changes direction above that gradient. For a traveling wave, this gradient is somewhat higher than that predicted by a simple four-step model. An experiment tests the theory for temperature gradients from 0 to 416 K/m in 50-50 He-Ar mixtures.

  5. Quasi-geostrophic dynamics in the presence of moisture gradients

    CERN Document Server

    Monteiro, Joy M

    2016-01-01

    The derivation of a quasi-geostrophic (QG) system from the rotating shallow water equations on a midlatitude beta-plane coupled with moisture is presented. Condensation is prescribed to occur whenever the moisture at a point exceeds a prescribed saturation value. It is seen that a slow condensation time scale is required to obtain a consistent set of equations at leading order. Further, since the advecting wind fields are geostrophic, changes in moisture (and hence, precipitation) occur only via non-divergent mechanisms. Following observations, a saturation profile with gradients in the zonal and meridional directions is prescribed. A purely meridional gradient has the effect of slowing down the dry Rossby waves, through a reduction in the "equivalent gradient" of the background potential vorticity. A large scale unstable moist mode results on the inclusion of a zonal gradient by itself, or in conjunction with a meridional moisture gradient. For gradients that are are representative of the atmosphere, the mos...

  6. Design of a High Thermal Gradient Bridgman Furnace

    Science.gov (United States)

    LeCroy, J. E.; Popok, D. P.

    1994-01-01

    The Advanced Automated Directional Solidification Furnace (AADSF) is a Bridgman-Stockbarger microgravity processing facility, designed and manifested to first fly aboard the second United States Microgravity Payload (USMP-2) Space Shuttle mission. The AADSF was principally designed to produce high axial thermal gradients, and is particularly suitable for metals solidification experiments, including non-dilute alloys. To accommodate a wider range of experimental conditions, the AADSF is equipped with a reconfigurable gradient zone. The overall design of the AADSF and the relationship between gradient zone design and furnace performance are described. Parametric thermal analysis was performed and used to select gradient zone design features that fulfill the high thermal gradient requirements of the USMP-2 experiment. The thermal model and analytical procedure, and parametric results leading to the first flight gradient zone configuration, are presented. Performance for the USMP-2 flight experiment is also predicted, and analysis results are compared to test data.

  7. Gradient-Based Cuckoo Search for Global Optimization

    OpenAIRE

    Fateen, Seif-Eddeen K.; Adrián Bonilla-Petriciolet

    2014-01-01

    One of the major advantages of stochastic global optimization methods is the lack of the need of the gradient of the objective function. However, in some cases, this gradient is readily available and can be used to improve the numerical performance of stochastic optimization methods specially the quality and precision of global optimal solution. In this study, we proposed a gradient-based modification to the cuckoo search algorithm, which is a nature-inspired swarm-based stochastic global opt...

  8. A FIBER-BRIDGING MODEL WITH STRESS GRADIENT EFFECTS

    Institute of Scientific and Technical Information of China (English)

    孙毅; 李涛

    2000-01-01

    Institute of Mechanics, Chinese Academy of Sciences, Beijing 100080, China)ABSTRACT: A fiber-bridging model with stress gradient effects is proposed for unidirectional fiber-reinforced composites. The stress gradient terms are introduced by solving a micromechanical model under a non-uniform stress loading. It is shown that the stress gradient effect is significant on both the fiber-bridging stress distribution and the value of the critical load of fiber failure.

  9. Effective anisotropy gradient in pressure graded [Co/Pd] multilayers

    Energy Technology Data Exchange (ETDEWEB)

    Kirby, B. J., E-mail: bkirby@nist.gov; Maranville, B. B. [Center for Neutron Research, NIST, Gaithersburg, Maryland 20899 (United States); Greene, P. K.; Liu, Kai [Physics Department, University of California, Davis, California 95616 (United States); Davies, J. E. [Advanced Technology Group, NVE Corporation, Eden Prarie, Minneapolis 55344 (United States)

    2015-02-14

    We have used polarized neutron reflectometry to show that controlled variation of growth pressure during deposition of Co/Pd multilayers can be used to achieve a significant vertical gradient in the effective anisotropy. This gradient is strongly dependent on deposition order (low to high pressure or vice versa), and is accompanied by a corresponding gradient in saturation magnetization. These results demonstrate pressure-grading as an attractively simple technique for tailoring the anisotropy profile of magnetic media.

  10. Structure and properties of sintered tool gradient materials

    OpenAIRE

    L.A. Dobrzański; B. Dołżańska

    2010-01-01

    Purpose: The main objective of the presented is to elaborate the fabrication technology of novel sintered tool gradient materials on the basis of hard wolfram carbide phase with cobalt binding phase, and to carry out research studies on the structure and properties of the newly elaborated sintered tool gradient materials.Design/methodology/approach: The following research studies have been carried out to elaborate a new group of sintered tool gradient materials, wolfram carbide with cobalt ma...

  11. Optimization of Polymer Separation by Gradient Polymer Elution Chromatography

    OpenAIRE

    Liem, Gideon R; Wang, Linda Nien-Hwa

    2013-01-01

    High Performance Liquid Chromatography (HPLC) has been a versatile separation method for polymers for many years. Analysis of different polymers by HPLC is typically done by utilizing the differential solubility of the polymers by mixing a good solvent and an anti-solvent in various compositions. This method is called Gradient Polymer Elution Chromatography (GPEC). While GPEC has been used extensively, it commonly uses a linear gradient to separate components. Linear solvent gradients consume...

  12. Pumpernickel Valley Geothermal Project Thermal Gradient Wells

    Energy Technology Data Exchange (ETDEWEB)

    Z. Adam Szybinski

    2006-01-01

    The Pumpernickel Valley geothermal project area is located near the eastern edge of the Sonoma Range and is positioned within the structurally complex Winnemucca fold and thrust belt of north-central Nevada. A series of approximately north-northeast-striking faults related to the Basin and Range tectonics are superimposed on the earlier structures within the project area, and are responsible for the final overall geometry and distribution of the pre-existing structural features on the property. Two of these faults, the Pumpernickel Valley fault and Edna Mountain fault, are range-bounding and display numerous characteristics typical of strike-slip fault systems. These characteristics, when combined with geophysical data from Shore (2005), indicate the presence of a pull-apart basin, formed within the releasing bend of the Pumpernickel Valley – Edna Mountain fault system. A substantial body of evidence exists, in the form of available geothermal, geological and geophysical information, to suggest that the property and the pull-apart basin host a structurally controlled, extensive geothermal field. The most evident manifestations of the geothermal activity in the valley are two areas with hot springs, seepages, and wet ground/vegetation anomalies near the Pumpernickel Valley fault, which indicate that the fault focuses the fluid up-flow. There has not been any geothermal production from the Pumpernickel Valley area, but it was the focus of a limited exploration effort by Magma Power Company. In 1974, the company drilled one exploration/temperature gradient borehole east of the Pumpernickel Valley fault and recorded a thermal gradient of 160oC/km. The 1982 temperature data from five unrelated mineral exploration holes to the north of the Magma well indicated geothermal gradients in a range from 66 to 249oC/km for wells west of the fault, and ~283oC/km in a well next to the fault. In 2005, Nevada Geothermal Power Company drilled four geothermal gradient wells, PVTG-1

  13. Gradient induced liquid motion on laser structured black Si surfaces

    CERN Document Server

    Paradisanos, I; Anastasiadis, S H; Stratakis, E

    2015-01-01

    This letter reports on the femtosecond laser fabrication of gradient-wettability micro/nano- patterns on Si surfaces. The dynamics of directional droplet spreading on the surface tension gradients developed is systematically investigated and discussed. It is shown that microdroplets on the patterned surfaces spread at a maximum speed of 505 mm/sec, that is the highest velocity demonstrated so far for liquid spreading on a surface tension gradient in ambient conditions. The application of the proposed laser patterning technique for the precise fabrication of surface tension gradients for open microfluidic systems, liquid management in fuel cells and drug delivery is envisaged.

  14. Complex Surface Concentration Gradients by Stenciled "Electro Click Chemistry"

    DEFF Research Database (Denmark)

    Hansen, Thomas Steen; Lind, Johan Ulrik; Daugaard, Anders Egede;

    2010-01-01

    Complex one- or two-dimensional concentration gradients of alkynated molecules are produced on azidized conducting polymer substrates by stenciled "electro click chemistry". The latter describes the local electrochemical generation of catalytically active Cu(I) required to complete a "click...... reaction" between alkynes and azides at room temperature. A stencil on the counter electrode defines the shape and multiplicity of the gradient(s) on the conducting polymer substrate, while the specific reaction conditions control gradient steepness and the maximum concentration deposited. Biologically...

  15. A class of globally convergent conjugate gradient methods

    Institute of Scientific and Technical Information of China (English)

    戴彧虹; 袁亚湘

    2003-01-01

    Conjugate gradient methods are very important ones for solving nonlinear optimization problems,especially for large scale problems. However, unlike quasi-Newton methods, conjugate gradient methods wereusually analyzed individually. In this paper, we propose a class of conjugate gradient methods, which can beregarded as some kind of convex combination of the Fletcher-Reeves method and the method proposed byDai et al. To analyze this class of methods, we introduce some unified tools that concern a general methodwith the scalarβk having the form of φk/φk-1. Consequently, the class of conjugate gradient methods canuniformly be analyzed.

  16. Minimum Inductance Optimal Design for the Gradient Coil

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    In MRI (Magnetic Resonance Imaging), a crucial role of gradient coils is to image organism, meanwhile the inductance of the coils determines the speed of imaging. So it is of great importance to optimize designs of the gradient coils. The target field approach is an effective method to design the gradient coils. Having applied this method and performing many numerical tests, we achieved the designs of the x-、y-、z- gradient coils , with the linearity of the fields generated by the coils in a sphere of radius 0.30 m less than 5%, in which the inductance and resistance of the coils also meet the requirements.

  17. Role of spatial averaging in multicellular gradient sensing

    Science.gov (United States)

    Smith, Tyler; Fancher, Sean; Levchenko, Andre; Nemenman, Ilya; Mugler, Andrew

    2016-06-01

    Gradient sensing underlies important biological processes including morphogenesis, polarization, and cell migration. The precision of gradient sensing increases with the length of a detector (a cell or group of cells) in the gradient direction, since a longer detector spans a larger range of concentration values. Intuition from studies of concentration sensing suggests that precision should also increase with detector length in the direction transverse to the gradient, since then spatial averaging should reduce the noise. However, here we show that, unlike for concentration sensing, the precision of gradient sensing decreases with transverse length for the simplest gradient sensing model, local excitation–global inhibition. The reason is that gradient sensing ultimately relies on a subtraction of measured concentration values. While spatial averaging indeed reduces the noise in these measurements, which increases precision, it also reduces the covariance between the measurements, which results in the net decrease in precision. We demonstrate how a recently introduced gradient sensing mechanism, regional excitation–global inhibition (REGI), overcomes this effect and recovers the benefit of transverse averaging. Using a REGI-based model, we compute the optimal two- and three-dimensional detector shapes, and argue that they are consistent with the shapes of naturally occurring gradient-sensing cell populations.

  18. Generalized Defect Energy in a Gradient Plasticity Framework

    CERN Document Server

    Bayerschen, E

    2015-01-01

    A gradient plasticity model is presented that includes a generalized, power-law type defect energy depending on the gradient of an equivalent plastic strain. Numerical regularization for the case of vanishing gradients is employed in the finite element discretization of the theory. Three exemplary choices of the defect energy exponent are compared in finite element simulations of elastic-plastic tricrystals under tensile loading. The influence of the power-law exponent is discussed related to the distribution of gradients and in regard to size effects. In addition, an analytical solution is presented for the single slip case and allows to interpret the numerical findings.

  19. Formation of Self-Generated Gradients of Iodixanol

    Directory of Open Access Journals (Sweden)

    John Graham

    2002-01-01

    Full Text Available The formation of self-generated gradients of iodixanol from a solution of uniform concentration requires the use of vertical or near-vertical rotors. The density profile that is generated depends upon the sedimentation path length of the rotor, centrifugation time, RCF and temperature. Modulation of the starting concentration changes the density range of the gradient. This Protocol Article illustrates the effect of these parameters on gradient shape in a few selected rotors. Because the gradients are formed by the centrifugal field, they are highly reproducible and easy to execute.

  20. Generation of tunable and pulsatile concentration gradients via microfluidic network

    KAUST Repository

    Zhou, Bingpu

    2014-06-04

    We demonstrate a compact Polydimethylsiloxane microfluidic chip which can quickly generate ten different chemical concentrations simultaneously. The concentration magnitude of each branch can be flexibly regulated based on the flow rate ratios of the two injecting streams. The temporal/pulsatile concentration gradients are achieved by integrating on-chip pneumatic actuated valves controlled by the external signals. The temporal concentration gradients can also be tuned precisely by varying applied frequency and duty cycle of the trigger signal. It is believed that such microdevice will be potentially used for some application areas of producing stable chemical gradients as well as allowing fast, pulsatile gradient transformation in seconds.

  1. A review of chemical gradient systems for cell analysis.

    Science.gov (United States)

    Somaweera, Himali; Ibraguimov, Akif; Pappas, Dimitri

    2016-02-11

    Microfluidic spatial and temporal gradient generators have played an important role in many biological assays such as in the analysis of wound healing, inflammation, and cancer metastasis. Chemical gradient systems can also be applied to other fields such as drug design, chemical synthesis, chemotaxis, etc. Microfluidic systems are particularly amenable to gradient formation, as the length scales used in chips enable fluid processes that cannot be conducted in bulk scale. In this review we discuss new microfluidic devices for gradient generation and applications of those systems in cell analysis.

  2. A multiscale gradient-dependent plasticity model for size effects

    Science.gov (United States)

    Lyu, Hao; Taheri-Nassaj, Nasrin; Zbib, Hussein M.

    2016-06-01

    The mechanical behaviour of polycrystalline material is closely correlated to grain size. In this study, we investigate the size-dependent phenomenon in multi-phase steels using a continuum dislocation dynamic model coupled with viscoplastic self-consistent model. We developed a dislocation-based strain gradient plasticity model and a stress gradient plasticity model, as well as a combined model, resulting in a theory that can predict size effect over a wide range of length scales. Results show that strain gradient plasticity and stress gradient plasticity are complementary rather than competing theories. The stress gradient model is dominant at the initial strain stage, and is much more effective for predicting yield strength than the strain gradient model. For larger deformations, the strain gradient model is dominant and more effective for predicting size-dependent hardening. The numerical results are compared with experimental data and it is found that they have the same trend for the yield stress. Furthermore, the effect of dislocation density at different strain stages is investigated, and the findings show that the Hall-Petch relation holds for the initial strain stage and breaks down for higher strain levels. Finally, a power law to describe the size effect and the transition zone between the strain gradient and stress gradient dominated regions is developed.

  3. Galactic abundance gradients from Cepheids : On the iron abundance gradient around 10-12 kpc

    OpenAIRE

    Lemasle, B.; Francois, P.; Piersimoni, A.; Pedicelli, S.; Bono, G.; Laney, C. D.; Primas, F.; Romaniello, M.

    2008-01-01

    Context: Classical Cepheids can be adopted to trace the chemical evolution of the Galactic disk since their distances can be estimated with very high accuracy. Aims: Homogeneous iron abundance measurements for 33 Galactic Cepheids located in the outer disk together with accurate distance determinations based on near-infrared photometry are adopted to constrain the Galactic iron gradient beyond 10 kpc. Methods: Iron abundances were determined using high resolution Cepheid spectra collected wit...

  4. Gradients in the Number of Species at Reef-Seagrass Ecotones Explained by Gradients in Abundance

    OpenAIRE

    Fernando Tuya; Vanderklift, Mathew A.; Thomas Wernberg; Thomsen, Mads S.

    2011-01-01

    Gradients in the composition and diversity (e.g. number of species) of faunal assemblages are common at ecotones between juxtaposed habitats. Patterns in the number of species, however, can be confounded by patterns in abundance of individuals, because more species tend to be found wherever there are more individuals. We tested whether proximity to reefs influenced patterns in the composition and diversity ('species density'  =  number of species per area and 'species richness'  =  number of ...

  5. Gradient Flow Analysis on MILC HISQ Ensembles

    CERN Document Server

    Bazavov, A; Brown, N; DeTar, C; Foley, J; Gottlieb, Steven; Heller, U M; Hetrick, J E; Komijani, J; Laiho, J; Levkova, L; Oktay, M; Sugar, R L; Toussaint, D; Van de Water, R S; Zhou, R

    2014-01-01

    We report on a preliminary scale determination with gradient-flow techniques on the $N_f = 2 + 1 + 1$ HISQ ensembles generated by the MILC collaboration. The ensembles include four lattice spacings, ranging from 0.15 to 0.06 fm, and both physical and unphysical values of the quark masses. The scales $\\sqrt{t_0}/a$ and $w_0/a$ are computed using Symanzik flow and the cloverleaf definition of $\\langle E \\rangle$ on each ensemble. Then both scales and the meson masses $aM_\\pi$ and $aM_K$ are adjusted for mistunings in the charm mass. Using a combination of continuum chiral perturbation theory and a Taylor series ansatz in the lattice spacing, the results are simultaneously extrapolated to the continuum and interpolated to physical quark masses. Our preliminary results are $\\sqrt{t_0} = 0.1422(7)$fm and $w_0 = 0.1732(10)$fm. We also find the continuum mass-dependence of $w_0$.

  6. Passive magnetic shielding in static gradient fields

    Science.gov (United States)

    Bidinosti, C. P.; Martin, J. W.

    2014-04-01

    The effect of passive magnetic shielding on dc magnetic field gradients imposed by both external and internal sources is studied for two idealized shield models: concentric spherical and infinitely-long cylindrical shells of linear material. It is found that higher-order multipoles of an externally applied magnetic field are always shielded progressively better for either geometry by a factor related to the order of the multipole. In regard to the design of internal coil systems, we determine reaction factors for the general multipole field and provide examples of how one can take advantage of the coupling of the coils to the innermost shell to optimize the uniformity of the field. Furthermore, we provide formulae relevant to active magnetic compensation systems which attempt to stabilize the interior fields by sensing and cancelling the exterior fields close to the outermost shell. Overall this work provides a comprehensive framework that is useful for the analysis and optimization of dc magnetic shields, serving as a theoretical and conceptual design guide as well as a starting point and benchmark for finite-element analysis.

  7. Evaluation of the Field Gradient Lattice Detector

    CERN Document Server

    AUTHOR|(CDS)2072983

    A novel Micro Pattern Gas Detector, named the Field Gradient Lattice Detector, has been implemented using technologies available to CERN’s Printed Circuit Workshop. Numerous prototypes based on various materials were constructed in different geometries and their gain performance has been studied using 55Fe and 109Cd X-ray sources in Argon-CO2 gas mixtures. Two axis (2D) prototype structures have been shown to provide stable gains of around 1000 while a 3D design, based on the same polyimide foils used in other MPGD elements, holds a gain of 5000 for 8.9 keV X-rays even at high rates of 22 kHz/mm2. At a gain of 3100, the device has been tested up to 1 MHz/mm2 and shows no signs of degradation in performance. The energy resolution of the 3D-in-polyimide is modest, around 40% for 5.9 keV X-rays and 30% if the source is collimated indicating a variation in gain over the 3x3 cm2 active area. Having the most promise for future applications, the 3D-in-polyimide design has been selected for testing with a custom-bu...

  8. Gradient Flow Analysis on MILC HISQ Ensembles

    Energy Technology Data Exchange (ETDEWEB)

    Brown, Nathan [Washington U., St. Louis; Bazavov, Alexei [Brookhaven; Bernard, Claude [Washington U., St. Louis; DeTar, Carleton [Utah U.; Foley, Justin [Utah U.; Gottlieb, Steven [Indiana U.; Heller, Urs M. [APS, New York; Hetrick, J. E. [U. Pacific, Stockton; Komijani, Javad [Washington U., St. Louis; Laiho, Jack [Syracuse U.; Levkova, Ludmila [Utah U.; Oktay, M. B. [Utah U.; Sugar, Robert [UC, Santa Barbara; Toussaint, Doug [Arizona U.; Van de Water, Ruth S. [Fermilab; Zhou, Ran [Fermilab

    2014-11-14

    We report on a preliminary scale determination with gradient-flow techniques on the $N_f = 2 + 1 + 1$ HISQ ensembles generated by the MILC collaboration. The ensembles include four lattice spacings, ranging from 0.15 to 0.06 fm, and both physical and unphysical values of the quark masses. The scales $\\sqrt{t_0}/a$ and $w_0/a$ are computed using Symanzik flow and the cloverleaf definition of $\\langle E \\rangle$ on each ensemble. Then both scales and the meson masses $aM_\\pi$ and $aM_K$ are adjusted for mistunings in the charm mass. Using a combination of continuum chiral perturbation theory and a Taylor series ansatz in the lattice spacing, the results are simultaneously extrapolated to the continuum and interpolated to physical quark masses. Our preliminary results are $\\sqrt{t_0} = 0.1422(7)$fm and $w_0 = 0.1732(10)$fm. We also find the continuum mass-dependence of $w_0$.

  9. Electron transfer across a thermal gradient.

    Science.gov (United States)

    Craven, Galen T; Nitzan, Abraham

    2016-08-23

    Charge transfer is a fundamental process that underlies a multitude of phenomena in chemistry and biology. Recent advances in observing and manipulating charge and heat transport at the nanoscale, and recently developed techniques for monitoring temperature at high temporal and spatial resolution, imply the need for considering electron transfer across thermal gradients. Here, a theory is developed for the rate of electron transfer and the associated heat transport between donor-acceptor pairs located at sites of different temperatures. To this end, through application of a generalized multidimensional transition state theory, the traditional Arrhenius picture of activation energy as a single point on a free energy surface is replaced with a bithermal property that is derived from statistical weighting over all configurations where the reactant and product states are equienergetic. The flow of energy associated with the electron transfer process is also examined, leading to relations between the rate of heat exchange among the donor and acceptor sites as functions of the temperature difference and the electronic driving bias. In particular, we find that an open electron transfer channel contributes to enhanced heat transport between sites even when they are in electronic equilibrium. The presented results provide a unified theory for charge transport and the associated heat conduction between sites at different temperatures. PMID:27450086

  10. High-Gradient, Millimeter Wave Accelerating Structure

    CERN Document Server

    Kuzikov, S V; Peskov, N Yu

    2015-01-01

    The millimeter wave all-metallic accelerating structure, aimed to provide more than 100 MeV/m gradient and fed by feeding RF pulses of 20-30 ns duration, is proposed. The structure is based on a waveguide with small helical corrugation. Each section of 10-20 wavelengths long has big circular cross-section aperture comparable with wavelength. Because short wavelength structures are expected to be critical to wakefields excitation and emittance growth, we suggest to combine in one structure properties of a linear accelerator and a cooling damping ring simultaneously. It provides acceleration of straight on-axis beam as well as cooling of this beam due to the synchrotron radiation of particles in strong non-synchronous transverse fields. These properties are provided by specific slow eigen mode which consists of two partial waves, TM01 and TM11. Simulations show that shunt impedance can be as high as 100 MOhm/m. Results of the first low-power tests with 30 GHz accelerating section are analyzed.

  11. Wing coloration and pigment gradients in scales of pierid butterflies

    NARCIS (Netherlands)

    Giraldo, Marco A.; Stavenga, Doekele G.

    2008-01-01

    Depending on the species, the individual scales of butterfly wings have a longitudinal gradient in structure and reflectance properties, as shown by scanning electron microscopy and microspectrophotometry. White scales of the male Small White, Pieris rapae crucivora, show a strong gradient in both t

  12. A NONMONOTONE CONJUGATE GRADIENT ALGORITHM FOR UNCONSTRAINED OPTIMIZATION

    Institute of Scientific and Technical Information of China (English)

    DAI Yuhong

    2002-01-01

    Conjugate gradient methods are very important methods for unconstrained optimization, especially for large scale problems. In this paper, we propose a new conjugate gradient method, in which the technique of nonmonotone line search is used. Under mild assumptions, we prove the global convergence of the method. Some numerical results are also presented.

  13. Accurate Measurement of Magnetic Resonance Imaging Gradient Characteristics

    Directory of Open Access Journals (Sweden)

    Hui Liu

    2013-12-01

    Full Text Available Recently, gradient performance and fidelity has become of increasing interest, as the fidelity of the magnetic resonance (MR image is somewhat dependent on the fidelity of the gradient system. In particular, for high fidelity non-Cartesian imaging, due to non-fidelity of the gradient system, it becomes necessary to know the actual k-space trajectory as opposed to the requested trajectory. In this work we show that, by considering the gradient system as a linear time-invariant system, the gradient impulse response function (GIRF can be reliably measured to a relatively high degree of accuracy with a simple setup, using a small phantom and a series of simple experiments. It is shown experimentally that the resulting GIRF is able to predict actual gradient performance with a high degree of accuracy. The method captures not only the frequency response but also gradient timing errors and artifacts due to mechanical vibrations of the gradient system. Some discussion is provided comparing the method presented here with other analogous methods, along with limitations of these methods.

  14. Stellar population gradients in early-type cluster galaxies

    CERN Document Server

    Rawle, T D; Lucey, J R

    2009-01-01

    We present a study of internal stellar population gradients in early-type cluster galaxies. Using the VLT VIMOS integral field unit, we observed 19 galaxies in the core of the Shapley Supercluster (z = 0.048). The radial trends in nine absorption lines (HdF to Fe5406) were measured to the effective radius for 14 galaxies, from which we derived the gradients in age, total metallicity and alpha-element over-abundance. We combine these with results from 11 galaxies studied in our previous VIMOS work (Rawle et al 2008). We observe a mean metallicity gradient of -0.13 +/- 0.04 per dex and, in common with the findings of previous studies, galaxies with log(sigma) > 2.1 have a sizeable intrinsic scatter in metallicity gradient. The mean log(age/Gyr) gradient is -0.02 +/- 0.06 per dex, although several galaxies have significant positive or negative age gradients. The mean gradient in alpha-element enhancement is -0.10 +/- 0.04 per dex. We find that stellar population gradients are primarily related to the central met...

  15. Scattering-angle based filtering of the waveform inversion gradients

    KAUST Repository

    Alkhalifah, Tariq Ali

    2014-11-22

    Full waveform inversion (FWI) requires a hierarchical approach to maneuver the complex non-linearity associated with the problem of velocity update. In anisotropic media, the non-linearity becomes far more complex with the potential trade-off between the multiparameter description of the model. A gradient filter helps us in accessing the parts of the gradient that are suitable to combat the potential non-linearity and parameter trade-off. The filter is based on representing the gradient in the time-lag normalized domain, in which the low scattering angle of the gradient update is initially muted out in the FWI implementation, in what we may refer to as a scattering angle continuation process. The result is a low wavelength update dominated by the transmission part of the update gradient. In this case, even 10 Hz data can produce vertically near-zero wavenumber updates suitable for a background correction of the model. Relaxing the filtering at a later stage in the FWI implementation allows for smaller scattering angles to contribute higher-resolution information to the model. The benefits of the extended domain based filtering of the gradient is not only it\\'s ability in providing low wavenumber gradients guided by the scattering angle, but also in its potential to provide gradients free of unphysical energy that may correspond to unrealistic scattering angles.

  16. Adaptive Regularization of Neural Networks Using Conjugate Gradient

    DEFF Research Database (Denmark)

    Goutte, Cyril; Larsen, Jan

    1998-01-01

    Andersen et al. (1997) and Larsen et al. (1996, 1997) suggested a regularization scheme which iteratively adapts regularization parameters by minimizing validation error using simple gradient descent. In this contribution we present an improved algorithm based on the conjugate gradient technique...

  17. A Gradient Regularization Method in Crosswell Seismic Tomography

    Institute of Scientific and Technical Information of China (English)

    Wang Shoudong

    2006-01-01

    Crosswell seismic tomography can be used to study the lateral variation of reservoirs, reservoir properties and the dynamic movement of fluids. In view of the instability of crosswell seismic tomography, the gradient method was improved by introducing regularization, and a gradient regularization method in presented in this paper. This method was verified by processing numerical simulation data and physical model data.

  18. Substrate-Bound Protein Gradients to Study Haptotaxis

    Directory of Open Access Journals (Sweden)

    Sebastien G. Ricoult

    2015-03-01

    Full Text Available Cells navigate in response to inhomogeneous distributions of extracellular guidance cues. The cellular and molecular mechanisms underlying migration in response to gradients of chemical cues have been investigated for over a century. Following the introduction of micropipettes and more recently microfluidics for gradient generation, much attention and effort was devoted to study cellular chemotaxis, which is defined as guidance by gradients of chemical cues in solution. Haptotaxis, directional migration in response to gradients of substrate-bound cues, has received comparatively less attention; however it is increasingly clear that in vivo many physiologically relevant guidance proteins – including many secreted cues – are bound to cellular surfaces or incorporated into extracellular matrix and likely function via a haptotactic mechanism. Here, we review the history of haptotaxis. We examine the importance of the reference surface, the surface in contact with the cell that is not covered by the cue, which forms a gradient opposing the gradient of the protein cue and must be considered in experimental designs and interpretation of results. We review and compare microfluidics, contact-printing, light patterning and 3D fabrication to pattern substrate-bound protein gradients in vitro, and focus on their application to study axon guidance. The range of methods to create substrate-bound gradients discussed herein make possible systematic analyses of haptotactic mechanisms. Furthermore, understanding the fundamental mechanisms underlying cell motility will inform bioengineering approaches to program cell navigation and recover lost function.

  19. Substrate-bound protein gradients to study haptotaxis.

    Science.gov (United States)

    Ricoult, Sébastien G; Kennedy, Timothy E; Juncker, David

    2015-01-01

    Cells navigate in response to inhomogeneous distributions of extracellular guidance cues. The cellular and molecular mechanisms underlying migration in response to gradients of chemical cues have been investigated for over a century. Following the introduction of micropipettes and more recently microfluidics for gradient generation, much attention and effort was devoted to study cellular chemotaxis, which is defined as guidance by gradients of chemical cues in solution. Haptotaxis, directional migration in response to gradients of substrate-bound cues, has received comparatively less attention; however, it is increasingly clear that in vivo many physiologically relevant guidance proteins - including many secreted cues - are bound to cellular surfaces or incorporated into extracellular matrix and likely function via a haptotactic mechanism. Here, we review the history of haptotaxis. We examine the importance of the reference surface, the surface in contact with the cell that is not covered by the cue, which forms a gradient opposing the gradient of the protein cue and must be considered in experimental designs and interpretation of results. We review and compare microfluidics, contact printing, light patterning, and 3D fabrication to pattern substrate-bound protein gradients in vitro. The range of methods to create substrate-bound gradients discussed herein makes possible systematic analyses of haptotactic mechanisms. Furthermore, understanding the fundamental mechanisms underlying cell motility will inform bioengineering approaches to program cell navigation and recover lost function.

  20. Color and stellar population gradients in galaxies. Correlation with mass

    CERN Document Server

    Tortora, C; Cardone, V F; Capaccioli, M; Jetzer, Ph; Molinaro, R

    2010-01-01

    We analyze the color gradients (CGs) of ~50000 nearby SDSS galaxies. From synthetic spectral models based on a simplified star formation recipe, we derive the mean spectral properties, and explain the observed radial trends of the color as gradients of the stellar population age and metallicity (Z). The most massive ETGs (M_* > 10^{11} Msun) have shallow CGs in correspondence of shallow (negative) Z gradients. In the stellar mass range 10^(10.3-10.5) < M_* < 10^(11) Msun, the Z gradients reach their minimum of ~ -0.5 dex^{-1}. At M_* ~ 10^{10.3-10.5} Msun, color and Z gradient slopes suddenly change. They turn out to anti-correlate with the mass, becoming highly positive at the very low masses. We have also found that age gradients anti-correlate with Z gradients, as predicted by hierarchical cosmological simulations for ETGs. On the other side, LTGs have gradients which systematically decrease with mass (and are always more negative than in ETGs), consistently with the expectation from gas infall and S...

  1. Sn Concentration Gradients in Powder-in-tube Superconductors

    CERN Document Server

    Cantoni, M; Pfirter, P Y; de Borman, F; Rossen, J; Arnau, G; Oberli, L; Lee, P

    2010-01-01

    The Sn concentration gradients across the A15 phase have been studied by Energy Dispersive X-ray Spectroscopy (EDS) measurements. High spatial resolution EDS measurements in the Transmission Electron Microscope reveal a comparatively strong Sn concentration gradient from the periphery towards the centre of individual (Nb Ta)3Sn grains.

  2. On the dynamics of a mixed parabolic-gradient system

    NARCIS (Netherlands)

    Krottje, J.K.

    2002-01-01

    In the current paper the dynamics of a mixed parabolic-gradient system is examined. Thesystem, which is a coupled system of parabolic equations and gradient equations, acts as a first model for the outgrowth of axons in a developing nervous system. For modeling considerations it is relevant to know

  3. CONVERGENCE PROPERTIES OF THE DEPENDENT PRP CONJUGATE GRADIENT METHODS

    Institute of Scientific and Technical Information of China (English)

    Shujun LIAN; Changyu WANG; Lixia CAO

    2006-01-01

    In this paper, a new region of βκ with respect to βPRPκ is given. With two Armijo-type line searches, the authors investigate the global convergence properties of the dependent PRP conjugate gradient methods, which extend the global convergence results of PRP conjugate gradient method proved by Grippo and Lucidi (1997) and Dai and Yuan (2002).

  4. Advances in high-gradient magnetic fishing for bioprocessing

    DEFF Research Database (Denmark)

    Goncalves Gomes, Claudia Sofia

    2006-01-01

    “High-gradient magnetic fishing” (HGMF) er en metode til processering af fødestrømme med biologiske molekyler. HGMF integrerer brugen af superparamagnetiske adsorbenter med separation og processering med høj-gradient magnetisk separation (HGMS) i et magnetisk filter. Adsorbenterne er uporøse og m...

  5. Gradient limitations in room temperature and superconducting acceleration structures

    Energy Technology Data Exchange (ETDEWEB)

    Solyak, N.A.; /Fermilab

    2008-10-01

    Accelerating gradient is a key parameter of the accelerating structure in large linac facilities, like future Linear Collider. In room temperature accelerating structures the gradient is limited mostly by breakdown phenomena, caused by high surface electric fields or pulse surface heating. High power processing is a necessary procedure to clean surface and improve the gradient. In the best tested X-band structures the achieved gradient is exceed 100 MV/m in of {approx}200 ns pulses for breakdown rate of {approx} 10{sup -7}. Gradient limit depends on number of factors and no one theory which can explain all sets of experimental results and predict gradient in new accelerating structure. In paper we briefly overview the recent experimental results of breakdown studies, progress in understanding of gradient limitations and scaling laws. Although superconducting rf technology has been adopted throughout the world for ILC, it has frequently been difficult to reach the predicted performance in these structures due to a number of factors: multipactoring, field emission, Q-slope, thermal breakdown. In paper we are discussing all these phenomena and the ways to increase accelerating gradient in SC cavity, which are a part of worldwide R&D program.

  6. On gradient solitons of the Ricci-Harmonic flow

    OpenAIRE

    Guo, Hongxin; Philipowski, Robert; Thalmaier, Anton

    2015-01-01

    In this paper we study gradient solitons to the Ricci flow coupled with harmonic map heat flow. We derive new identities on solitons similar to those on gradient solitons of the Ricci flow. When the soliton is compact, we get a classification result. We also discuss the relation with quasi-Einstein manifolds.

  7. Asymptotic estimates and compactness of expanding gradient Ricci solitons

    OpenAIRE

    Deruelle, Alix

    2014-01-01

    We first investigate the asymptotics of conical expanding gradient Ricci solitons by proving sharp decay rates to the asymptotic cone both in the generic and the asymptotically Ricci flat case. We then establish a compactness theorem concerning nonnegatively curved expanding gradient Ricci solitons.

  8. Gradient-Based Cuckoo Search for Global Optimization

    Directory of Open Access Journals (Sweden)

    Seif-Eddeen K. Fateen

    2014-01-01

    Full Text Available One of the major advantages of stochastic global optimization methods is the lack of the need of the gradient of the objective function. However, in some cases, this gradient is readily available and can be used to improve the numerical performance of stochastic optimization methods specially the quality and precision of global optimal solution. In this study, we proposed a gradient-based modification to the cuckoo search algorithm, which is a nature-inspired swarm-based stochastic global optimization method. We introduced the gradient-based cuckoo search (GBCS and evaluated its performance vis-à-vis the original algorithm in solving twenty-four benchmark functions. The use of GBCS improved reliability and effectiveness of the algorithm in all but four of the tested benchmark problems. GBCS proved to be a strong candidate for solving difficult optimization problems, for which the gradient of the objective function is readily available.

  9. Effects of fluid velocity gradients on heavy quark energy loss

    International Nuclear Information System (INIS)

    We use holographic duality to analyze the drag force on, and consequent energy loss of, a heavy quark moving through a strongly coupled conformal fluid with non-vanishing gradients in its velocity and temperature. We derive the general expression for the drag force to first order in the fluid gradients. Using this general expression, we show that a quark that is instantaneously at rest, relative to the fluid, in a fluid whose velocity is changing with time feels a nonzero force. And, we show that for a quark that is moving ultra-relativistically, the first order gradient “corrections” become larger than the zeroth order drag force, suggesting that the gradient expansion may be unreliable in this regime. We illustrate the importance of the fluid gradients for heavy quark energy loss by considering a fluid with one-dimensional boost invariant Bjorken expansion as well as the strongly coupled plasma created by colliding sheets of energy

  10. HG2006 Workshop on High-Gradient Radio Frequency

    CERN Multimedia

    2006-01-01

    Meeting to be held at CERN on 25-27 September 2006 in Room 40/S2-B01 (Building 40). The objective of the workshop is to bring the high-gradient RF community together to present and discuss recent theoretical and experimental developments. Significant progress has recently been made in understanding the basic physics of rf breakdown and developing techniques for achieving higher gradients. This workshop should contribute to maintaining these efforts and to promoting contacts and collaboration. The scientific programme will be organized in half day sessions dedicated to: High-gradient rf experimental results Theory and computation High-gradient technology, materials and processing Specialized experiments on related high-gradient or high-power phenomenon like dc discharge and pulsed surface heating Reports from collaborations and projects. Each session will consist of selected presentations followed by a dedicated discussion. Information about the meeting and participant registration is available at http...

  11. Role of Polarized G Protein Signaling in Tracking Pheromone Gradients.

    Science.gov (United States)

    McClure, Allison W; Minakova, Maria; Dyer, Jayme M; Zyla, Trevin R; Elston, Timothy C; Lew, Daniel J

    2015-11-23

    Yeast cells track gradients of pheromones to locate mating partners. Intuition suggests that uniform distribution of pheromone receptors over the cell surface would yield optimal gradient sensing. However, yeast cells display polarized receptors. The benefit of such polarization was unknown. During gradient tracking, cell growth is directed by a patch of polarity regulators that wanders around the cortex. Patch movement is sensitive to pheromone dose, with wandering reduced on the up-gradient side of the cell, resulting in net growth in that direction. Mathematical modeling suggests that active receptors and associated G proteins lag behind the polarity patch and act as an effective drag on patch movement. In vivo, the polarity patch is trailed by a G protein-rich domain, and this polarized distribution of G proteins is required to constrain patch wandering. Our findings explain why G protein polarization is beneficial and illuminate a novel mechanism for gradient tracking. PMID:26609960

  12. Gradient dynamics models for liquid films with soluble surfactant

    CERN Document Server

    Thiele, Uwe; Pismen, Len M

    2016-01-01

    In this paper we propose equations of motion for the dynamics of liquid films of surfactant suspensions that consist of a general gradient dynamics framework based on an underlying energy functional. This extends the gradient dynamics approach to dissipative non-equilibrium thin film systems with several variables, and casts their dynamic equations into a form that reproduces Onsager's reciprocity relations. We first discuss the general form of gradient dynamics models for an arbitrary number of fields and discuss simple well-known examples with one or two fields. Next, we develop the gradient dynamics (three field) model for a thin liquid film covered by soluble surfactant and discuss how it automatically results in consistent convective (driven by pressure gradients, Marangoni forces and Korteweg stresses), diffusive, adsorption/desorption, and evaporation fluxes. We then show that in the dilute limit, the model reduces to the well-known hydrodynamic form that includes Marangoni fluxes due to a linear equat...

  13. Temperature gradients and clear-air turbulence probabilities

    Science.gov (United States)

    Bender, M. A.; Panofsky, H. A.; Peslen, C. A.

    1976-01-01

    In order to forecast clear-air turbulence (CAT) in jet aircraft flights, a study was conducted in which the data from a special-purpose instrument aboard a Boeing 747 jet airliner were compared with satellite-derived radiance gradients, conventional temperature gradients from analyzed maps, and temperature gradients obtained from a total air temperature sensor on the plane. The advantage of making use of satellite-derived data is that they are available worldwide without the need for radiosonde observations, which are scarce in many parts of the world. Major conclusions are that CAT probabilities are significantly higher over mountains than flat terrain, and that satellite radiance gradients appear to discriminate between CAT and no CAT better than conventional temperature gradients over flat lands, whereas the reverse is true over mountains, the differences between the two techniques being not large over mountains.

  14. Biogeochemical gradients above a coal tar DNAPL.

    Science.gov (United States)

    Scherr, Kerstin E; Backes, Diana; Scarlett, Alan G; Lantschbauer, Wolfgang; Nahold, Manfred

    2016-09-01

    Naturally occurring distribution and attenuation processes can keep hydrocarbon emissions from dense non aqueous phase liquids (DNAPL) into the adjacent groundwater at a minimum. In a historically coal tar DNAPL-impacted site, the de facto absence of a plume sparked investigations regarding the character of natural attenuation and DNAPL resolubilization processes at the site. Steep vertical gradients of polycyclic aromatic hydrocarbons, microbial community composition, secondary water quality and redox-parameters were found to occur between the DNAPL-proximal and shallow waters. While methanogenic and mixed-electron acceptor conditions prevailed close to the DNAPL, aerobic conditions and very low dissolved contaminant concentrations were identified in three meters vertical distance from the phase. Comprehensive two-dimensional gas chromatography-mass spectrometry (GC×GC-MS) proved to be an efficient tool to characterize the behavior of the present complex contaminant mixture. Medium to low bioavailability of ferric iron and manganese oxides of aquifer samples was detected via incubation with Shewanella alga and evidence for iron and manganese reduction was collected. In contrast, 16S rDNA phylogenetic analysis revealed the absence of common iron reducing bacteria. Aerobic hydrocarbon degraders were abundant in shallow horizons, while nitrate reducers were dominating in deeper aquifer regions, in addition to a low relative abundance of methanogenic archaea. Partial Least Squares - Canonical Correspondence Analysis (PLS-CCA) suggested that nitrate and oxygen concentrations had the greatest impact on aquifer community structure in on- and offsite wells, which had a similarly high biodiversity (H' and Chao1). Overall, slow hydrocarbon dissolution from the DNAPL appears to dominate natural attenuation processes. This site may serve as a model for developing legal and technical strategies for the treatment of DNAPL-impacted sites where contaminant plumes are absent or

  15. Efficient and robust gradient enhanced Kriging emulators.

    Energy Technology Data Exchange (ETDEWEB)

    Dalbey, Keith R.

    2013-08-01

    %E2%80%9CNaive%E2%80%9D or straight-forward Kriging implementations can often perform poorly in practice. The relevant features of the robustly accurate and efficient Kriging and Gradient Enhanced Kriging (GEK) implementations in the DAKOTA software package are detailed herein. The principal contribution is a novel, effective, and efficient approach to handle ill-conditioning of GEK's %E2%80%9Ccorrelation%E2%80%9D matrix, RN%CC%83, based on a pivoted Cholesky factorization of Kriging's (not GEK's) correlation matrix, R, which is a small sub-matrix within GEK's RN%CC%83 matrix. The approach discards sample points/equations that contribute the least %E2%80%9Cnew%E2%80%9D information to RN%CC%83. Since these points contain the least new information, they are the ones which when discarded are both the easiest to predict and provide maximum improvement of RN%CC%83's conditioning. Prior to this work, handling ill-conditioned correlation matrices was a major, perhaps the principal, unsolved challenge necessary for robust and efficient GEK emulators. Numerical results demonstrate that GEK predictions can be significantly more accurate when GEK is allowed to discard points by the presented method. Numerical results also indicate that GEK can be used to break the curse of dimensionality by exploiting inexpensive derivatives (such as those provided by automatic differentiation or adjoint techniques), smoothness in the response being modeled, and adaptive sampling. Development of a suitable adaptive sampling algorithm was beyond the scope of this work; instead adaptive sampling was approximated by omitting the cost of samples discarded by the presented pivoted Cholesky approach.

  16. Molecular mechanisms for generating transmembrane proton gradients.

    Science.gov (United States)

    Gunner, M R; Amin, Muhamed; Zhu, Xuyu; Lu, Jianxun

    2013-01-01

    Membrane proteins use the energy of light or high energy substrates to build a transmembrane proton gradient through a series of reactions leading to proton release into the lower pH compartment (P-side) and proton uptake from the higher pH compartment (N-side). This review considers how the proton affinity of the substrates, cofactors and amino acids are modified in four proteins to drive proton transfers. Bacterial reaction centers (RCs) and photosystem II (PSII) carry out redox chemistry with the species to be oxidized on the P-side while reduction occurs on the N-side of the membrane. Terminal redox cofactors are used which have pKas that are strongly dependent on their redox state, so that protons are lost on oxidation and gained on reduction. Bacteriorhodopsin is a true proton pump. Light activation triggers trans to cis isomerization of a bound retinal. Strong electrostatic interactions within clusters of amino acids are modified by the conformational changes initiated by retinal motion leading to changes in proton affinity, driving transmembrane proton transfer. Cytochrome c oxidase (CcO) catalyzes the reduction of O2 to water. The protons needed for chemistry are bound from the N-side. The reduction chemistry also drives proton pumping from N- to P-side. Overall, in CcO the uptake of 4 electrons to reduce O2 transports 8 charges across the membrane, with each reduction fully coupled to removal of two protons from the N-side, the delivery of one for chemistry and transport of the other to the P-side.

  17. Liquid droplet movement on horizontal surface with gradient surface energy

    Institute of Scientific and Technical Information of China (English)

    LIAO Qiang; WANG Hong; ZHU Xun; LI Mingwei

    2006-01-01

    A surface with gradient surface energy was fabricated on a silicon wafer by using the chemical vapor deposition (CVD) technology with the dodecyltrichlorosilane (C12H25Cl3Si) vapor which was adsorbed chemically on the surface of the silicon wafer to form a self-assemble monolayer (ASM) and thus a gradient profile of wettability. The microscopic contours of the gradient surface were measured with Seiko SPA400 atom force microscope (AFM). And the surface wettability profile was characterized by the sessile drop method, measuring the contact angle of fine water droplets that lay on the gradient surface, to represent the distribution of the surface energy on the surface. Using a high-speed video imaging system, the motion of water droplet on the horizontal gradient surface was visualized and the transient velocity was measured under ambient condition. The experimental results show that the liquid droplets can be driven to move from hydrophobic side to hydrophilic side on the horizontal gradient surface and the velocity of droplet can reach up to 40 mm/s. In addition, the motion of the water droplet can be generally divided into two stages: an acceleration stage and a deceleration stage. The droplet presents a squirming movement on the surface with a lower peak velocity and a larger extent of deceleration motion. And the static advancing contact angle of the droplet is obviously larger than the dynamic advancing contact angle on the gradient energy surface.

  18. Vertical magnetic field gradient in the photospheric layers of sunspots

    CERN Document Server

    Joshi, Jayant; Hirzberger, Johann; Solanki, Sami K; Tiwari, Sanjiv K

    2016-01-01

    We investigate the vertical gradient of the magnetic field of sunspots in the photospheric layer. Independent observations were obtained with the SOT/SP onboard the Hinode spacecraft and with the TIP-2 mounted at the VTT. We apply state-of-the-art inversion techniques to both data sets to retrieve the magnetic field and the corresponding vertical gradient. In the sunspot penumbrae we detected patches of negative vertical gradients of the magnetic field strength, i.e.,the magnetic field strength decreases with optical depth in the photosphere. The negative gradient patches are located in the inner and partly in the middle penumbrae in both data sets. From the SOT/SP observations, we found that the negative gradient patches are restricted mainly to the deep photospheric layers and are concentrated near the edges of the penumbral filaments. MHD simulations also show negative gradients in the inner penumbrae, also at the locations of filaments. Both in the observations and simulation negative gradients of the mag...

  19. Single image superresolution based on gradient profile sharpness.

    Science.gov (United States)

    Yan, Qing; Xu, Yi; Yang, Xiaokang; Nguyen, Truong Q

    2015-10-01

    Single image superresolution is a classic and active image processing problem, which aims to generate a high-resolution (HR) image from a low-resolution input image. Due to the severely under-determined nature of this problem, an effective image prior is necessary to make the problem solvable, and to improve the quality of generated images. In this paper, a novel image superresolution algorithm is proposed based on gradient profile sharpness (GPS). GPS is an edge sharpness metric, which is extracted from two gradient description models, i.e., a triangle model and a Gaussian mixture model for the description of different kinds of gradient profiles. Then, the transformation relationship of GPSs in different image resolutions is studied statistically, and the parameter of the relationship is estimated automatically. Based on the estimated GPS transformation relationship, two gradient profile transformation models are proposed for two profile description models, which can keep profile shape and profile gradient magnitude sum consistent during profile transformation. Finally, the target gradient field of HR image is generated from the transformed gradient profiles, which is added as the image prior in HR image reconstruction model. Extensive experiments are conducted to evaluate the proposed algorithm in subjective visual effect, objective quality, and computation time. The experimental results demonstrate that the proposed approach can generate superior HR images with better visual quality, lower reconstruction error, and acceptable computation efficiency as compared with state-of-the-art works. PMID:25807567

  20. Direct and Indirect Gradient Control for Static Optimisation

    Institute of Scientific and Technical Information of China (English)

    Yi Cao

    2005-01-01

    Static "self-optimising" control is an important concept, which provides a link between static optimisation and control[1]. According to the concept, a dynamic control system could be configured in such a way that when a set of certain variables are maintained at their setpoints, the overall process operation is automatically optimal or near optimal at steadystate in the presence of disturbances. A novel approach using constrained gradient control to achieve "self-optimisation" has been proposed by Cao[2]. However, for most process plants, the information required to get the gradient measure may not be available in real-time. In such cases, controlled variable selection has to be carried out based on measurable candidates. In this work, the idea of direct gradient control has been extended to controlled variable selection based on gradient sensitivity analysis (indirect gradient control). New criteria, which indicate the sensitivity of the gradient function to disturbances and implementation errors, have been derived for selection. The particular case study shows that the controlled variables selected by gradient sensitivity measures are able to achieve near optimal performance.

  1. Hydrodynamics Beyond the Gradient Expansion: Resurgence and Resummation.

    Science.gov (United States)

    Heller, Michal P; Spaliński, Michał

    2015-08-14

    Consistent formulations of relativistic viscous hydrodynamics involve short-lived modes, leading to asymptotic rather than convergent gradient expansions. In this Letter we consider the Müller-Israel-Stewart theory applied to a longitudinally expanding quark-gluon plasma system and identify hydrodynamics as a universal attractor without invoking the gradient expansion. We give strong evidence for the existence of this attractor and then show that it can be recovered from the divergent gradient expansion by Borel summation. This requires careful accounting for the short-lived modes which leads to an intricate mathematical structure known from the theory of resurgence. PMID:26317715

  2. Generating substrate bound functional chemokine gradients in vitro

    DEFF Research Database (Denmark)

    Hjortø, Gertrud Malene; Hansen, Morten; Larsen, Niels Bent;

    2009-01-01

    Microcontact printing (mCP) is employed to generate discontinuous microscale gradients of active fractalkine, a chemokine expressed by endothelial cells near sites of inflammation where it is believed to form concentration gradients descending away from the inflamed area. In vivo, fractalkine...... is a transmembrane molecule extending its chemokine domain into the vascular lumen. Substrate bound in vitro gradients may thus closely resemble in vivo conditions. Direct mCP of sensitive proteins like fractalkine may cause partial protein denaturation and will not ensure correct orientation of the biologically...

  3. A REVISED CONJUGATE GRADIENT PROJECTION ALGORITHM FOR INEQUALITY CONSTRAINED OPTIMIZATIONS

    Institute of Scientific and Technical Information of China (English)

    Wei Wang; Lian-sheng Zhang; Yi-fan Xu

    2005-01-01

    A revised conjugate gradient projection method for nonlinear inequality constrained optimization problems is proposed in the paper, since the search direction is the combination of the conjugate projection gradient and the quasi-Newton direction. It has two merits. The one is that the amount of computation is lower because the gradient matrix only needs to be computed one time at each iteration. The other is that the algorithm is of global convergence and locally superlinear convergence without strict complementary condition under some mild assumptions. In addition the search direction is explicit.

  4. Redistribution of ruthenium in UO2 in a temperature gradient

    International Nuclear Information System (INIS)

    The redistribution of Ru in UO2 in a thermal gradient is substantial, with Ru moving up the temperature gradient. The apparent heat of transport of Ru in UO2 is negative. This is believed to be the same mechanism which causes fission product Ru to redistribute in oxide fuels. The tungsten crucible reduces stoichiometric urania, and the oxygen in UO2 under steep temperature gradient moves down the temperature. The heat of transport of oxygen vacancy in UO2 is -138 +- 53 KJ/mole

  5. Evolution of a Planar Wake in Adverse Pressure Gradient

    Science.gov (United States)

    Driver, David M.; Mateer, George G.

    2016-01-01

    In the interest of improving the predictability of high-lift systems at maximum lift conditions, a series of fundamental experiments were conducted to study the effects of adverse pressure gradient on a wake flow. Mean and fluctuating velocities were measured with a two-component laser-Doppler velocimeter. Data were obtained for several cases of adverse pressure gradient, producing flows ranging from no reversed flow to massively reversed flow. While the turbulent Reynolds stresses increase with increasing size of the reversed flow region, the gradient of Reynolds stress does not. Computations using various turbulence models were unable to reproduce the reversed flow.

  6. Rainbow refractometry on particles with radial refractive index gradients

    Energy Technology Data Exchange (ETDEWEB)

    Saengkaew, Sawitree [CNRS/Universite et INSA de Rouen, UMR 6614/CORIA, BP12, 76 800, Saint Etienne du Rouvray CEDEX (France); Chulalongkorn University, Center of Excellence in Particle Technology, Faculty of Engineering, Bangkok (Thailand); Charinpanitkul, Tawatchai; Vanisri, Hathaichanok; Tanthapanichakoon, Wiwut [Chulalongkorn University, Center of Excellence in Particle Technology, Faculty of Engineering, Bangkok (Thailand); Biscos, Yves; Garcia, Nicolas; Lavergne, Gerard [ONERA/DMAE, Toulouse (France); Mees, Loic; Gouesbet, Gerard; Grehan, Gerard [CNRS/Universite et INSA de Rouen, UMR 6614/CORIA, BP12, 76 800, Saint Etienne du Rouvray CEDEX (France)

    2007-10-15

    The rainbow refractrometry, under its different configurations (classical and global), is an attractive technique to extract information from droplets in evaporation such as diameter and temperature. Recently a new processing strategy has been developed which increases dramatically the size and refractive index measurements accuracy for homogeneous droplets. Nevertheless, for mono component as well as for multicomponent droplets, the presence of temperature and/or of concentration gradients induce the presence of a gradient of refractive index which affects the interpretation of the recorded signals. In this publication, the effect of radial gradient on rainbow measurements with a high accuracy never reached previously is quantified. (orig.)

  7. An Improved Double-Threshold Method Based on Gradient Histogram

    Institute of Scientific and Technical Information of China (English)

    YANG Shen; CHEN Shu-zhen; ZHANG Bing

    2004-01-01

    This paper analyzes the characteristics of the output gradient histogram and shortages of several traditional automatic threshold methods in order to segment the gradient image better. Then an improved double-threshold method is proposed, which is combined with the method of maximum classes variance, estimating-area method and double-threshold method. This method can automatically select two different thresholds to segment gradient images. The computer simulation is performed on the traditional methods and this algorithm and proves that this method can get satisfying result.

  8. A Stochastic Gradient Type Algorithm for Closed Loop Problems

    OpenAIRE

    Barty, Kengy; Roy, Jean-Sebastien; Strugarek, Cyrille

    2005-01-01

    We focus on solving closed-loop stochastic problems, and propose a perturbed gradient algorithm to achieve this goal. The main hurdle in such problems is the fact that the control variables are infinite dimensional, and have hence to be represented in a finite way in order to numerically solve the problem. In the same way, the gradient of the criterion is itself an infinite dimensional object. Our algorithm replaces this exact (and unknown) gradient by a perturbed one, which consists in the p...

  9. Composition Gradient Hard Coatings by Arc Ion Plating

    Institute of Scientific and Technical Information of China (English)

    CHEN Jun; LIN Guo-qiang; WANG Fu-gang

    2004-01-01

    Arc Ion Plating can be used to synthesize multi-component composition gradient hard coatings by adjusting arc currents of metal targets. The present work aims at a comprehensive description of such a technique. The examples of TiAl multi-layer alloy coatings and (Ti, M) N composition-gradient films were taken (M representing Zr, Nb etc.) for the purpose of explaining the working process and evaluating practical effects. The results show that this technique has the advantages of easy manipulation, rapid deposition, and wide composition range.Key Words: Arc Ion plating, hard coating, composition gradient coatings

  10. Electronic Bloch oscillation in bilayer graphene gradient superlattices

    Energy Technology Data Exchange (ETDEWEB)

    Cheng, Hemeng; Li, Changan; Song, Yun [Department of Physics, Beijing Normal University, Beijing 100875 (China); Ma, Tianxing, E-mail: txma@bnu.edu.cn [Department of Physics, Beijing Normal University, Beijing 100875 (China); Beijing Computational Science Research Center, Beijing 100084 (China); Wang, Li-Gang, E-mail: sxwlg@yahoo.com [Department of Physics, Zhejiang University, Hangzhou 310027 (China); Lin, Hai-Qing [Beijing Computational Science Research Center, Beijing 100084 (China)

    2014-08-18

    We investigate the electronic Bloch oscillation in bilayer graphene gradient superlattices using transfer matrix method. By introducing two kinds of gradient potentials of square barriers along electrons propagation direction, we find that Bloch oscillations up to terahertz can occur. Wannier-Stark ladders, as the counterpart of Bloch oscillation, are obtained as a series of equidistant transmission peaks, and the localization of the electronic wave function is also signature of Bloch oscillation. Furthermore, the period of Bloch oscillation decreases linearly with increasing gradient of barrier potentials.

  11. Development and characterization of 430L matrix composites gradient materials

    Directory of Open Access Journals (Sweden)

    Elisa Maria Ruiz-Navas

    2005-03-01

    Full Text Available This paper deals with a new concept that is Functionally Gradient Materials (FGM. The materials developed in this work are constituted by a 430L matrix core and composite materials with this matrix and gradient concentration with NbC reinforcement, from the core to the surface, through different steps. Composite powders of different content in NbC were produced through high energy milling in order to obtain the gradient composition. The morphology and microhardness of these powders were characterised and subsequently were processed through conventional P/M techniques, pressing and sintering. The materials obtained show improved wear behaviour.

  12. High gradient accelaration of particles by wake field transformation

    International Nuclear Information System (INIS)

    High gradient linear accelerators seem to be the most likely type of future e+e- colliding beam machine with center of mass energy in the TeV range. In order to make such an accelerator economically feasible accelerating gradients must be above 100 MeV per meter. The concept of ''Wake Field Transformation'' seems to allow such high gradients. The basic principle is explained together with theoretical results from electromagnetic field calculations and particle dynamics simulation codes. The layout of an experiment is described which is presently under construction at DESY. (author)

  13. Hydrodynamics Beyond the Gradient Expansion: Resurgence and Resummation

    CERN Document Server

    Heller, Michal P

    2015-01-01

    Consistent formulations of relativistic viscous hydrodynamics involve short lived modes, leading to asymptotic rather than convergent gradient expansions. In this Letter we consider the Mueller-Israel-Stewart theory applied to a longitudinally expanding quark-gluon plasma system and identify hydrodynamics as a universal attractor without invoking the gradient expansion. We give strong evidence for the existence of this attractor and then show that it can be recovered from the divergent gradient expansion by Borel summation. This requires careful accounting for the short-lived modes which leads to an intricate mathematical structure known from the theory of resurgence.

  14. PRECONDITIONED SPECTRAL PROJECTED GRADIENT METHOD ON CONVEX SETS

    Institute of Scientific and Technical Information of China (English)

    Lenys Bello; Marcos Raydan

    2005-01-01

    The spectral gradient method has proved to be effective for solving large-scale unconstrained optimization problems. It has been recently extended and combined with the projected gradient method for solving optimization problems on convex sets. This combination includes the use of nonmonotone line search techniques to preserve the fast local convergence. In this work we further extend the spectral choice of steplength to accept preconditioned directions when a good preconditioner is available. We present an algorithm that combines the spectral projected gradient method with preconditioning strategies to increase the local speed of convergence while keeping the global properties. We discuss implementation details for solving large-scale problems.

  15. Imaging the Buried Chicxulub Crater with Gravity Gradients and Cenotes

    Science.gov (United States)

    Hildebrand, A. R.; Pilkington, M.; Halpenny, J. F.; Ortiz-Aleman, C.; Chavez, R. E.; Urrutia-Fucugauchi, J.; Connors, M.; Graniel-Castro, E.; Camara-Zi, A.; Vasquez, J.

    1995-09-01

    Differing interpretations of the Bouguer gravity anomaly over the Chicxulub crater, Yucatan Peninsula, Mexico, have yielded diameter estimates of 170 to 320 km. Knowing the crater's size is necessary to quantify the lethal perturbations to the Cretaceous environment associated with its formation. The crater's size (and internal structure) is revealed by the horizontal gradient of the Bouguer gravity anomaly over the structure, and by mapping the karst features of the Yucatan region. To improve our resolution of the crater's gravity signature we collected additional gravity measurements primarily along radial profiles, but also to fill in previously unsurveyed areas. Horizontal gradient analysis of Bouguer gravity data objectively highlights the lateral density contrasts of the impact lithologies and suppresses regional anomalies which may obscure the gravity signature of the Chicxulub crater lithologies. This gradient technique yields a striking circular structure with at least 6 concentric gradient features between 25 and 85 km radius. These features are most distinct in the southwest probably because of denser sampling of the gravity field. Our detailed profiles detected an additional feature and steeper gradients (up to 5 mGal/km) than the original survey. We interpret the outer four gradient maxima to represent concentric faults in the crater's zone of slumping as is also revealed by seismic reflection data. The inner two probably represent the margin of the central uplift and the peak ring and or collapsed transient cavity. Radial gradients in the SW quadrant over the inferred ~40 km-diameter central uplift (4) may represent structural "puckering" as revealed at eroded terrestrial craters. Gradient features related to regional gravity highs and lows are visible outside the crater, but no concentric gradient features are apparent at distances > 90 km radius. The marginal gradient features may be modelled by slump faults as observed in large complex craters on

  16. Presence and significance of temperature gradients among different ovarian tissues

    DEFF Research Database (Denmark)

    Hunter, Ronald H.; Einer-Jensen, Niels; Greve, Torben

    2006-01-01

    After recalling male gonadal physiology in respect of tissue temperatures within the scrotal sac, and raising questions concerning abdominal testes, attention turned to mature Graafian follicles and ovarian stroma. Temperature gradients between such tissues were summarized for human, rabbit, pig,...

  17. Comparative Studies of High-Gradient Rf and Dc Breakdowns

    CERN Document Server

    Kovermann, Jan Wilhelm; Wuensch, Walter

    2010-01-01

    The CLIC project is based on normal-conducting high-gradient accelerating structures with an average accelerating gradient of 100 MV/m. The maximum achievable gradient in these structures is limited by the breakdown phenomenon. The physics of breakdowns is not yet fully understood quantitatively. A full knowledge could have strong impact on the design, material choice and construction of rf structures. Therefore, understanding breakdowns has great importance to reaching a gradient of 100MV/m with an acceptable breakdown probability. This thesis addresses the physics underlying the breakdown effect, focusing on a comparison of breakdowns in rf structures and in a dc spark setup. The dc system is simpler, easier to benchmark against simulations, with a faster turnaround time, but the relationship to rf breakdown must be established. To do so, an experimental approach based on optical diagnostics and electrical measurements methods was made. Following an introduction into the CLIC project, a general theoretical ...

  18. Surface Tension Gradients Induced by Temperature: The Thermal Marangoni Effect

    Science.gov (United States)

    Gugliotti, Marcos; Baptisto, Mauricio S.; Politi, Mario J.

    2004-01-01

    Surface tensions gradients were generated in a thin liquid film because of the local increase in temperature, for demonstration purposes. This is performed using a simple experiment and allows different alternatives for heat generation to be used.

  19. A Restarted Conjugate Gradient Method for Ill-posed Problems

    Institute of Scientific and Technical Information of China (English)

    Yan-fei Wang

    2003-01-01

    This paper presents a restarted conjugate gradient iterative algorithm for solving ill-posed problems.The damped Morozov's discrepancy principle is used as a stopping rule. Numerical experiments are given to illustrate the efficiency of the method.

  20. On the combined gravity gradient modeling for applied geophysics

    CERN Document Server

    Veryaskin, Alexey

    2007-01-01

    Gravity gradiometry research and development has intensified in recent years to the extent that technologies providing a resolution of about 1 Eotvos per 1 sec average shall likely soon be available for multiple critical applications such as natural resources exploration, oil reservoir monitoring and defence establishment. Much of the content of this paper was composed a decade ago, and only minor modifications were required for the conclusions to be just as applicable today. In this paper we demonstrate how gravity gradient data can be modeled, and show some examples of how gravity gradient data can be combined in order to extract valuable information. In particular, this study demonstrates the importance of two gravity gradient components, Txz and Tyz which, when processed together, can provide more information on subsurface density contrasts than that derived solely from the vertical gravity gradient (Tzz).

  1. Mass transfer coefficients determination from linear gradient elution experiments.

    Science.gov (United States)

    Pfister, David; Morbidelli, Massimo

    2015-01-01

    A procedure to estimate mass transfer coefficients in linear gradient elution chromatography is presented and validated by comparison with experimental data. Mass transfer coefficients are traditionally estimated experimentally through the van Deemter plot, which represents the HETP as a function of the fluid velocity. Up to now, the HETP was obtained under isocratic elution conditions. Unfortunately, isocratic elution experiments are often not suitable for large biomolecules which suffer from severe mass transfer hindrances. Yamamoto et al. were the first to propose a semi-empirical equation to relate HETPs measured from linear gradient elution experiments to those obtained under isocratic conditions [7]. Based on his pioneering work, the approach presented in this work aims at providing an experimental procedure supported by simple equations to estimate reliable mass transfer parameters from linear gradient elution chromatographic experiments. From the resolution of the transport model, we derived a rigorous analytical expression for the HETP in linear gradient elution chromatography.

  2. Spatial gradients of polychlorinated biphenyls (PCBs) and organochlorine pesticides

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Spatial gradients of polychlorinated biphenyls (PCBs) and organochlorine pesticides were examined in the young-of-the-year (YOY) blue多sh collected in the vicinity...

  3. Formation of actin networks in microfluidic concentration gradients

    Science.gov (United States)

    Strelnikova, Natalja; Herren, Florian; Schoenenberger, Cora-Ann; Pfohl, Thomas

    2016-05-01

    The physical properties of cytoskeletal networks are contributors in a number of mechanical responses of cells including cellular deformation and locomotion, and are crucial for the proper action of living cells. Local chemical gradients modulate cytoskeletal functionality including the interactions of the cytoskeleton with other cellular components. Actin is a major constituent of the cytoskeleton. Introducing a microfluidic-based platform, we explored the impact of concentration gradients on the formation and structural properties of actin networks. Microfluidics-controlled flow-free steady state experimental conditions allow for the generation of chemical gradients of different profiles, such as linear or step-like. We discovered specific features of actin networks emerging in defined gradients. In particular, we analyzed the effects of spatial conditions on network properties, bending rigidities of network links, and the network elasticity.

  4. Scattering angle base filtering of the inversion gradients

    KAUST Repository

    Alkhalifah, Tariq Ali

    2014-01-01

    Full waveform inversion (FWI) requires a hierarchical approach based on the availability of low frequencies to maneuver the complex nonlinearity associated with the problem of velocity inversion. I develop a model gradient filter to help us access the parts of the gradient more suitable to combat this potential nonlinearity. The filter is based on representing the gradient in the time-lag normalized domain, in which low scattering angles of the gradient update are initially muted. The result are long-wavelength updates controlled by the ray component of the wavefield. In this case, even 10 Hz data can produce near zero wavelength updates suitable for a background correction of the model. Allowing smaller scattering angle to contribute provides higher resolution information to the model.

  5. Face recognition with histograms of fractional differential gradients

    Science.gov (United States)

    Yu, Lei; Ma, Yan; Cao, Qi

    2014-05-01

    It has proved that fractional differentiation can enhance the edge information and nonlinearly preserve textural detailed information in an image. This paper investigates its ability for face recognition and presents a local descriptor called histograms of fractional differential gradients (HFDG) to extract facial visual features. HFDG encodes a face image into gradient patterns using multiorientation fractional differential masks, from which histograms of gradient directions are computed as the face representation. Experimental results on Yale, face recognition technology (FERET), Carnegie Mellon University pose, illumination, and expression (CMU PIE), and A. Martinez and R. Benavente (AR) databases validate the feasibility of the proposed method and show that HFDG outperforms local binary patterns (LBP), histograms of oriented gradients (HOG), enhanced local directional patterns (ELDP), and Gabor feature-based methods.

  6. Gradient Bundle Analysis: A Full Topological Approach to Chemical Bonding

    CERN Document Server

    Morgenstern, Amanda

    2016-01-01

    The "chemical bond" is a central concept in molecular sciences, but there is no consensus as to what a bond actually is. Therefore, a variety of bonding models have been developed, each defining the structure of molecules in a different manner with the goal of explaining and predicting chemical properties. This thesis describes the initial development of gradient bundle analysis (GBA), a chemical bonding model that creates a high resolution picture of chemical interactions within the charge density framework. GBA is based on concepts from the quantum theory of atoms in molecules (QTAIM), but uses a more complete picture of the topology and geometry of the electron charge density to understand and predict bonding interactions. Gradient bundles are defined as volumes bounded by zero-flux surfaces (ZFSs) in the gradient of the charge density with well-defined energies. The structure of gradient bundles provides an avenue for detecting the locations of valence electrons, which correspond to reactive regions in a ...

  7. Metallicity Gradients in Disks: Do Galaxies Form Inside-Out?

    CERN Document Server

    Pilkington, K; Gibson, B K; Calura, F; Michel-Dansac, L; Thacker, R J; Molla, M; Matteucci, F; Rahimi, A; Kawata, D; Kobayashi, C; Brook, C B; Stinson, G S; Couchman, H M P; Bailin, J; Wadsley, J

    2012-01-01

    We examine radial and vertical metallicity gradients using a suite of disk galaxy simulations, supplemented with two classic chemical evolution approaches. We determine the rate of change of gradient and reconcile differences between extant models and observations within the `inside-out' disk growth paradigm. A sample of 25 disks is used, consisting of 19 from our RaDES (Ramses Disk Environment Study) sample, realised with the adaptive mesh refinement code RAMSES. Four disks are selected from the MUGS (McMaster Unbiased Galaxy Simulations) sample, generated with the smoothed particle hydrodynamics (SPH) code GASOLINE, alongside disks from Rahimi et al. (GCD+) and Kobayashi & Nakasato (GRAPE-SPH). Two chemical evolution models of inside-out disk growth were employed to contrast the temporal evolution of their radial gradients with those of the simulations. We find that systematic differences exist between the predicted evolution of radial abundance gradients in the RaDES and chemical evolution models, comp...

  8. Image Variational Denoising Using Gradient Fidelity on Curvelet Shrinkage

    Directory of Open Access Journals (Sweden)

    Roysam Badrinath

    2010-01-01

    Full Text Available A new variational image model is presented for image restoration using a combination of the curvelet shrinkage method and the total variation (TV functional. In order to suppress the staircasing effect and curvelet-like artifacts, we use the multiscale curvelet shrinkage to compute an initial estimated image, and then we propose a new gradient fidelity term, which is designed to force the gradients of desired image to be close to the curvelet approximation gradients. Then, we introduce the Euler-Lagrange equation and make an investigation on the mathematical properties. To improve the ability of preserving the details of edges and texture, the spatial-varying parameters are adaptively estimated in the iterative process of the gradient descent flow algorithm. Numerical experiments demonstrate that our proposed method has good performance in alleviating both the staircasing effect and curvelet-like artifacts, while preserving fine details.

  9. Bacterial pleomorphism and competition in a relative humidity gradient

    NARCIS (Netherlands)

    de Goffau, Marcus C.; Yang, Xiaomei; van Dijl, Jan Maarten; Harmsen, Hermie J. M.

    2009-01-01

    The response of different bacterial species to reduced water availability was studied using a simple relative humidity gradient technique. Interestingly, distinct differences in morphology and growth patterns were observed between populations of the same species growing at different relative humidit

  10. Penaeid Shrimp Salinity Gradient Tank Study 2005-2008

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — We designed an experimental gradient tank to examine salinity preferences of juvenile brown shrimp and white shrimp. Although no strong pattern of salinity...

  11. Conditioning the full waveform inversion gradient to welcome anisotropy

    KAUST Repository

    Alkhalifah, Tariq Ali

    2014-08-05

    Multi-parameter full waveform inversion (FWI) suffers from the complex nonlinearity in the objective function, compounded by the eventual tradeoff between the model parameters. A hierarchical approach based on frequency and arrival time data decimation to maneuver the complex nonlinearity associated with this problem usually falls short in anisotropic media. In place of data decimation, I use a model gradient filter approach to access the parts of the gradient more suitable to combat the potential nonlinearity and parameter trade off. The filter is based on representing the gradient in the time-lag normalized domain in which the small scattering angles of the gradient update is initially muted out. A model update hierarchical filtering strategy includes applying varying degree of filtering to the different parameter updates. A feature not easily accessible to simple data decimation. Using both FWI and reection based FWI (RFWI), two strategies to combat the tradeoff between anisotropic parameters are outlined.

  12. Suppression of Chemotactic Explosion by Mixing

    Science.gov (United States)

    Kiselev, Alexander; Xu, Xiaoqian

    2016-11-01

    Chemotaxis plays a crucial role in a variety of processes in biology and ecology. In many instances, processes involving chemical attraction take place in fluids. One of the most studied PDE models of chemotaxis is given by the Keller-Segel equation, which describes a population density of bacteria or mold which is attracted chemically to substance they secrete. Solutions of the Keller-Segel equation can exhibit dramatic collapsing behavior, where density concentrates positive mass in a measure zero region. A natural question is whether the presence of fluid flow can affect singularity formation by mixing the bacteria thus making concentration harder to achieve. In this paper, we consider the parabolic-elliptic Keller-Segel equation in two and three dimensions with an additional advection term modeling ambient fluid flow. We prove that for any initial data, there exist incompressible fluid flows such that the solution to the equation stays globally regular. On the other hand, it is well known that when the fluid flow is absent, there exists initial data leading to finite time blow up. Thus the presence of fluid flow can prevent the singularity formation. We discuss two classes of flows that have the explosion arresting property. Both classes are known as very efficient mixers. The first class are the relaxation enhancing (RE) flows of (Ann Math:643-674, 2008). These flows are stationary. The second class of flows are the Yao-Zlatos near-optimal mixing flows (Mixing and un-mixing by incompressible flows. arXiv:1407.4163, 2014), which are time dependent. The proof is based on the nonlinear version of the relaxation enhancement construction of (Ann Math:643-674, 2008), and on some variations of the global regularity estimate for the Keller-Segel model.

  13. Profiling Signaling Polarity in Chemotactic Cells

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Yingchun; Ding, Shi-Jian; Wang, Wei; Jacobs, Jon M.; Qian, Weijun; Moore, Ronald J.; Yang, Feng; Camp, David G.; Smith, Richard D.; Klemke, Richard L.

    2007-05-15

    While directional movement requires morphological polarization characterized by formation of a leading pseudopodium at the front and a trailing rear at the back, little is known about how protein networks are spatially integrated to regulate this process. Here, we utilize a unique pseudopodial purification system and quantitative proteomics and phosphoproteomics to map the spatial relationship of 3509 proteins and 228 distinct sites of phosphorylation in polarized cells. Networks of signaling proteins, metabolic pathways, actin regulatory proteins, and kinase-substrate cascades were found to partition to different poles of the cell including components of the Ras/ERK pathway. Also, several novel proteins were found to be differentially phosphorylated at the front or rear of polarized cells and to localize to distinct subcellular structures. Our findings provide insight into the spatial organization of signaling networks that control cell movement and provide a comprehensive profile of proteins and their sites of phosphorylation that control cell polarization.

  14. Suppression of Chemotactic Explosion by Mixing

    Science.gov (United States)

    Kiselev, Alexander; Xu, Xiaoqian

    2016-06-01

    Chemotaxis plays a crucial role in a variety of processes in biology and ecology. In many instances, processes involving chemical attraction take place in fluids. One of the most studied PDE models of chemotaxis is given by the Keller-Segel equation, which describes a population density of bacteria or mold which is attracted chemically to substance they secrete. Solutions of the Keller-Segel equation can exhibit dramatic collapsing behavior, where density concentrates positive mass in a measure zero region. A natural question is whether the presence of fluid flow can affect singularity formation by mixing the bacteria thus making concentration harder to achieve. In this paper, we consider the parabolic-elliptic Keller-Segel equation in two and three dimensions with an additional advection term modeling ambient fluid flow. We prove that for any initial data, there exist incompressible fluid flows such that the solution to the equation stays globally regular. On the other hand, it is well known that when the fluid flow is absent, there exists initial data leading to finite time blow up. Thus the presence of fluid flow can prevent the singularity formation. We discuss two classes of flows that have the explosion arresting property. Both classes are known as very efficient mixers. The first class are the relaxation enhancing (RE) flows of (Ann Math:643-674, 2008). These flows are stationary. The second class of flows are the Yao-Zlatos near-optimal mixing flows (Mixing and un-mixing by incompressible flows. arXiv:1407.4163, 2014), which are time dependent. The proof is based on the nonlinear version of the relaxation enhancement construction of (Ann Math:643-674, 2008), and on some variations of the global regularity estimate for the Keller-Segel model.

  15. Adapted nested force-gradient integrators for the Schwinger model

    CERN Document Server

    Shcherbakov, Dmitry; Günther, Michael; Finkenrath, Jacob; Knechtli, Francesco; Peardon, Michael

    2016-01-01

    We study a novel class of numerical integrators, the adapted nested force-gradient schemes, used within the molecular dynamics step of the Hybrid Monte Carlo (HMC) algorithm. We test these methods in the Schwinger model on the lattice, a well known benchmark problem. We derive the analytical basis of nested force-gradient type methods and demonstrate the advantage of the proposed approach, namely reduced computational costs compared with other numerical integration schemes in HMC.

  16. On Locally Conformally Flat Gradient Shrinking Ricci Solitons

    OpenAIRE

    Cao, Xiaodong; Wang, Biao; Zhang, Zhou

    2008-01-01

    In this paper, we first apply an integral identity on Ricci solitons to prove that closed locally conformally flat gradient Ricci solitons are of constant sectional curvature. We then generalize this integral identity to complete noncompact gradient shrinking Ricci solitons, under the conditions that the Ricci curvature is bounded from below and the Riemannian curvature tensor has at most exponential growth. As a consequence of this identity, we classify complete locally conformally flat grad...

  17. MODELS FOR THE COUNTER-GRADIENT TRANSPORT PHENOMENA

    Institute of Scientific and Technical Information of China (English)

    蒋剑波; 卢志明; 刘晓明; 刘宇陆

    2001-01-01

    The counter gradient transport phenomena on momentum, energy and passive scalar in turbulent flows were studied by use of the single response function for TSDIA. As a result, models that can describe qualitatively the phenomena are obtained. Then the results are simplified by use of the inertial range theory, and the results for lower degrees agree with results of predecessor. Finally the counter gradient-transport phenomena in channel flow and circular wake flow are analyzed.

  18. A NOTE ON THE NONLINEAR CONJUGATE GRADIENT METHOD

    Institute of Scientific and Technical Information of China (English)

    Yu-hong Dai; Ya-xiang Yuan

    2002-01-01

    The conjugate gradient method for unconstrained optimization problems varies with a scalar. In this note, a general condition concerning the scalar is given, which ensures the global convergence of the method in the case of strong Wolfe line searches. It is also discussed how to use the result to obtain the convergence of the famous Fletcher-Reeves, and Polak-Ribiere-Polyak conjugate gradient methods. That the condition cannot be relaxed in some sense is mentioned.

  19. Variability study of Si nanowire FETs with different junction gradients

    OpenAIRE

    Jun-Sik Yoon; Kihyun Kim; Taiuk Rim; Chang-Ki Baek

    2016-01-01

    Random dopant fluctuation effects of gate-all-around Si nanowire field-effect transistors (FETs) are investigated in terms of different diameters and junction gradients. The nanowire FETs with smaller diameters or shorter junction gradients increase relative variations of the drain currents and the mismatch of the drain currents between source-drain and drain-source bias change in the saturation regime. Smaller diameters decreased current drivability critically compared to standard deviations...

  20. Personal Exposure in a Ventilated Room with Concentration Gradients

    DEFF Research Database (Denmark)

    Brohus, Henrik; Nielsen, Peter V.

    This paper deals with personal exposure in rooms with concentration gradients and persons present. Results from case studies including a breathing thermal manikin in a displacement ventilated room and in a wind channel are presented.......This paper deals with personal exposure in rooms with concentration gradients and persons present. Results from case studies including a breathing thermal manikin in a displacement ventilated room and in a wind channel are presented....

  1. Ultimate Gradient Limitation in Niobium Superconducting Accelerating Cavities

    Energy Technology Data Exchange (ETDEWEB)

    Checchin, Mattia [IIT, Chicago; Grassellino, Anna [Fermilab; Martinello, Martina [Fermilab; Posen, Sam [Fermilab; Romanenko, Alexander [Fermilab; Zasadzinski, John [IIT, Chicago (main)

    2016-06-01

    The present study is addressed to the theoretical description of the ultimate gradient limitation in SRF cavities. Our intent is to exploit experimental data to confirm models which provide feed-backs on how to improve the current state-of-art. New theoretical insight on the cavities limiting factor can be suitable to improve the quench field of N-doped cavities, and therefore to take advantage of high Q0 at high gradients.

  2. Novel geometry gradient coils for MRI designed by genetic algorithm

    OpenAIRE

    Williams, Guy Barnett

    2001-01-01

    This thesis concerns the design of gradient coils for magnetic resonance imaging systems. The method of design by genetic algorithm optimisation is applied to novel gradient geometries both by use of conventional computer facilities, and, by parallelisation of the design algorithm, on a supercomputer architecture. Geometries and regions of interests which are inaccessible to analytic solution are considered, and the criteria which are difficult to include in such algorithms, such as the robus...

  3. Gradient flow approach to geometric convergence analysis of preconditioned eigensolvers

    OpenAIRE

    Knyazev, Andrew V.; Neymeyr, Klaus

    2008-01-01

    Preconditioned eigenvalue solvers (eigensolvers) are gaining popularity, but their convergence theory remains sparse and complex. We consider the simplest preconditioned eigensolver--the gradient iterative method with a fixed step size--for symmetric generalized eigenvalue problems, where we use the gradient of the Rayleigh quotient as an optimization direction. A sharp convergence rate bound for this method has been obtained in 2001--2003. It still remains the only known such bound for any o...

  4. Electrochemical proton gradient in Micrococcus lysodeikticus cells and membrane vesicles.

    OpenAIRE

    Friedberg, I.; Kaback, H R

    1980-01-01

    Using the distribution of weak acids to measure the pH gradient (delta pH; interior alkaline) and the distribution of the lipophilic cation [3H]tetraphenylphosphonium+ to monitor the membrane potential (delta psi; interior negative), we studied the electrochemical gradient or protons (delta mu- H+) across the membrane of Micrococcus lysodeikticus cells and plasma membrane vesicles. With reduced phenazine methosulfate as electron donor, intact cells exhibited a relatively constant delta mu- H+...

  5. Computer simulation model of salt-gradient solar ponds

    Energy Technology Data Exchange (ETDEWEB)

    Panahi, Z.

    1981-01-01

    The mass and energy transfer processes of salt-gradient solar pond were developed into a finite element of computer model. The system represented by the model can be: (1) a non-convective salt-gradient solar pond for which the energy transfer takes place by conduction through the brine and the round beneath the pond; (2) a stratified three-zone solar pond consisting of upper and lower convective zones and a non-convective gradient zone in between. The temperature of the upper and lower convective zones are predicted in terms of the net energy input to the zones. The energy fluxes at the pond surface include: reflected and absorbed solar radiation, evaporation energy loss, net long wave radiation loss to the atmosphere, advected energy of precipitation and inflow water, and convective heat loss at the surface. The model predicts the time dependent concentration, density, and temperature gradients in the pond. The program can operate with any time step of less than or equal to 24 hours, using either average daily or variables (with the time step) values of air temperature (calculated in the model using average, maximum and minimum values) and solar radiation data. The different cases that have been studied using the model are (1) the performance of a non-insulated salt-gradient solar pond with seepage of the brine and energy exchange through the ground below the pond; (2) the performance of an insulated salt-gradient solar pond with seepage of the brine and energy exchange through the ground below the pond; (2) the performance of an insulated salt-gradient and stratified three-zone solar pond. For stratified ponds comparisons on performance are made by changing the thickness of: (1) the upper convective zone, (2) the non-convective gradient zone, and (3) the lower convective (storage) zone.

  6. A parametric study of adverse pressure gradient turbulent boundary layers

    International Nuclear Information System (INIS)

    There are many open questions regarding the behaviour of turbulent boundary layers subjected to pressure gradients and this is confounded by the large parameter space that may affect these flows. While there have been many valuable investigations conducted within this parameter space, there are still insufficient data to attempt to reduce this parameter space. Here, we consider a parametric study of adverse pressure gradient turbulent boundary layers where we restrict our attention to the pressure gradient parameter, β, the Reynolds number and the acceleration parameter, K. The statistics analyzed are limited to the streamwise fluctuating velocity. The data show that the mean velocity profile in strong pressure gradient boundary layers does not conform to the classical logarithmic law. Moreover, there appears to be no measurable logarithmic region in these cases. It is also found that the large-scale motions scaling with outer variables are energised by the pressure gradient. These increasingly strong large-scale motions are found to be the dominant contributor to the increase in turbulence intensity (scaled with friction velocity) with increasing pressure gradient across the boundary layer.

  7. Effect of Crustal Density Structures on GOCE Gravity Gradient Observables

    Directory of Open Access Journals (Sweden)

    Robert Tenzer and Pavel Novák

    2013-01-01

    Full Text Available We investigate the gravity gradient components corrected for major known anomalous density structures within the _ crust. Heterogeneous mantle density structures are disregarded. The gravimetric forward modeling technique is utilized to compute the gravity gradients based on methods for a spherical harmonic analysis and synthesis of a gravity field. The _ gravity gradient components are generated using the global geopotential model GOCO-03s. The topographic and stripping gravity corrections due to the density contrasts of the ocean and ice are computed from the global topographic/bathymetric model DTM2006.0 (which also includes the ice-thickness dataset. The discrete data of sediments and crust layers taken from the CRUST2.0 global crustal model are then used to apply the additional stripping corrections for sediments and remaining anomalous crustal density structures. All computations are realized globally on a one arc-deg geographical grid at a mean satellite elevation of 255 km. The global map of the consolidated crust-stripped gravity gradients reveals distinctive features which are attributed to global tectonics, lithospheric plate configuration, lithosphere structure and mantle dynamics (e.g., glacial isostatic adjustment, mantle convection. The Moho signature, which is the most pronounced signal in these refined gravity gradients, is superimposed over a weaker gravity signal of the lithospheric mantle. An interpretational quality of the computed (refined gravity gradient components is mainly limited by a low accuracy and resolution of the CRUST2.0 sediment and crustal layer data and unmodeled mantle structures.

  8. Hepatic venous pressure gradients measured by duplex ultrasound

    International Nuclear Information System (INIS)

    AIMS: The hepatic venous pressure gradient is a major prognostic factor in portal hypertension but its measurement is complex and requires invasive angiography. This study investigated the relationship between the hepatic venous pressure gradient and a number of Doppler measurements, including the arterial acceleration index. METHOD: We measured the hepatic venous pressure gradient in 50 fasting patients at hepatic venography. Immediately afterwards, a duplex sonographic examination of the liver was performed at which multiple measurements and indices of the venous and arterial hepatic vasculature were made. RESULTS: Hepatic arterial acceleration was correlated directly with the hepatic venous pressure gradient (r = 0.83, P -2 provided a positive predictive value of 95%, a sensitivity of 65% and a specificity of 95% for detecting patients with severe portal hypertension (hepatic venous pressure gradient > 12 mmHg). A correlation between the hepatic venous pressure gradient and the congestion index of the portal vein velocity (r = 0.45,P = 0.01) and portal vein velocity (r = 0.40,P = 0.044), was also noted. CONCLUSION: Measuring the hepatic arterial acceleration index may help in the non-invasive evaluation of portal hypertension. Tasu, J.-P. et al. (2002)

  9. Time variation of radial gradients in the galactic disk: electron temperatures and abundances

    CERN Document Server

    Maciel, W J; Costa, R D D

    2015-01-01

    We investigate the electron temperature gradient in the galactic disk as measured by young HII regions on the basis of radio recombination lines and the corresponding gradient in planetary nebulae (PN) based on [OIII] electron temperatures. The main goal is to investigate the time evolution of the electron temperature gradient and of the radial abundance gradient, which is essentially a mirror image of the temperature gradient. The recently derived electron temperature gradient from radio recombination lines in HII regions is compared with a new determination of the corresponding gradient from planetary nebulae for which the progenitor star ages have been determined. The newly derived electron temperature gradient for PN with progenitor stars with ages in the 4-5 Gyr range is much steeper than the corresponding gradient for HII regions. These electron temperature gradients are converted into O/H gradients in order to make comparisons with previous estimates of the flattening rate of the abundance gradient. It...

  10. The influence of electron density gradient direction on gradient-drift instabilities in the E-layer of the ionosphere

    CERN Document Server

    Berngardt, O I

    2010-01-01

    We show that the dispersion relation for gradient-drift and Farley-Buneman instabilities within the approximation of the two-fluid MHD should contain the terms which are traditionally supposed to be small. These terms are caused by taking into account divergence of particles velocity and electron density gradient along the magnetic field direction. It is shown that at heights below 115km the solution of the dispersion relation transforms into standard one, except the situations, when the electron density gradient is parallel to magnetic field or wave-vector. In these cases the traditionally neglected summands to the growth rate of the irregularities becomes significant. The additional terms depend on relative directions of electron density gradient, magnetic field and mean velocities. This leads to the different instability growth conditions at equatorial and high-latitude regions of the ionosphere. The obtained results do not contradict with the experimental data.

  11. Microfabricated refractive index gradient based detector for reversed-phase liquid chromatography with mobile phase gradient elution.

    Science.gov (United States)

    McBrady, Adam D; Synovec, Robert E

    2006-02-10

    Typical refractive index (RI) detectors for liquid chromatography (LC) are not well suited to application with mobile phase gradient elution, due to the difficulty in correcting for the detected baseline shift during the gradient. We report a sensitive, highly reproducible, microfabricated refractive index gradient (micro-RIG) detector that performs well with mobile phase gradient elution LC. Since the micro-RIG signal remains on-scale throughout the mobile phase gradient, one can apply a baseline correction procedure. We demonstrate that by collecting two mobile phase gradient blanks and subtracting one of them from the other, a reproducible, flat baseline is achieved. Therefore, subtracting a blank from a separation provides a baseline corrected chromatogram with reasonably high signal-to-noise ratio for eluting analytes. The micro-RIG detector uses a collimated diode laser beam to optically probe a RIG formed perpendicular to the laminar flow direction within a microfabricated borosilicate glass chip. The chip-based design of the detector is suitable for either traditional bench-top or LC-on-a-chip technologies. We report reversed phase high performance liquid chromatography (RP-HPLC) separations of proteins and polymers, over mobile phase gradient conditions of 67% A:33% B to 3% A:97% B by volume, where A is 96% methanol:3.9% water:0.1% trifluoroacetic acid (TFA), and B is 3.9% methanol:96% water:0.1% TFA. The separations were performed on a Jupiter 5 mu C4 300 A 150 mm x 1.0 mm Phenomenex column at a flow rate of 20 microl/min. Viscosity changes during the mobile phase gradient separation are found to shift the on-chip merge position of the detected concentration gradient (i.e., RIG), in a reproducible fashion. However, this viscosity effect makes detection sensitivity vary throughout the mobile phase gradient, due to moving the optimized position of the probe beam in relation to the analyte concentration gradient being probed. None-the-less, consistent limits

  12. Thermally tailored gradient topography surface on elastomeric thin films.

    Science.gov (United States)

    Roy, Sudeshna; Bhandaru, Nandini; Das, Ritopa; Harikrishnan, G; Mukherjee, Rabibrata

    2014-05-14

    We report a simple method for creating a nanopatterned surface with continuous variation in feature height on an elastomeric thin film. The technique is based on imprinting the surface of a film of thermo-curable elastomer (Sylgard 184), which has continuous variation in cross-linking density introduced by means of differential heating. This results in variation of viscoelasticity across the length of the surface and the film exhibits differential partial relaxation after imprinting with a flexible stamp and subjecting it to an externally applied stress for a transient duration. An intrinsic perfect negative replica of the stamp pattern is initially created over the entire film surface as long as the external force remains active. After the external force is withdrawn, there is partial relaxation of the applied stresses, which is manifested as reduction in amplitude of the imprinted features. Due to the spatial viscoelasticity gradient, the extent of stress relaxation induced feature height reduction varies across the length of the film (L), resulting in a surface with a gradient topography with progressively varying feature heights (hF). The steepness of the gradient can be controlled by varying the temperature gradient as well as the duration of precuring of the film prior to imprinting. The method has also been utilized for fabricating wettability gradient surfaces using a high aspect ratio biomimetic stamp. The use of a flexible stamp allows the technique to be extended for creating a gradient topography on nonplanar surfaces as well. We also show that the gradient surfaces with regular structures can be used in combinatorial studies related to pattern directed dewetting. PMID:24697617

  13. Thermally tailored gradient topography surface on elastomeric thin films.

    Science.gov (United States)

    Roy, Sudeshna; Bhandaru, Nandini; Das, Ritopa; Harikrishnan, G; Mukherjee, Rabibrata

    2014-05-14

    We report a simple method for creating a nanopatterned surface with continuous variation in feature height on an elastomeric thin film. The technique is based on imprinting the surface of a film of thermo-curable elastomer (Sylgard 184), which has continuous variation in cross-linking density introduced by means of differential heating. This results in variation of viscoelasticity across the length of the surface and the film exhibits differential partial relaxation after imprinting with a flexible stamp and subjecting it to an externally applied stress for a transient duration. An intrinsic perfect negative replica of the stamp pattern is initially created over the entire film surface as long as the external force remains active. After the external force is withdrawn, there is partial relaxation of the applied stresses, which is manifested as reduction in amplitude of the imprinted features. Due to the spatial viscoelasticity gradient, the extent of stress relaxation induced feature height reduction varies across the length of the film (L), resulting in a surface with a gradient topography with progressively varying feature heights (hF). The steepness of the gradient can be controlled by varying the temperature gradient as well as the duration of precuring of the film prior to imprinting. The method has also been utilized for fabricating wettability gradient surfaces using a high aspect ratio biomimetic stamp. The use of a flexible stamp allows the technique to be extended for creating a gradient topography on nonplanar surfaces as well. We also show that the gradient surfaces with regular structures can be used in combinatorial studies related to pattern directed dewetting.

  14. Gradients in the Number of Species at Reef-Seagrass Ecotones Explained by Gradients in Abundance

    Science.gov (United States)

    Tuya, Fernando; Vanderklift, Mathew A.; Wernberg, Thomas; Thomsen, Mads S.

    2011-01-01

    Gradients in the composition and diversity (e.g. number of species) of faunal assemblages are common at ecotones between juxtaposed habitats. Patterns in the number of species, however, can be confounded by patterns in abundance of individuals, because more species tend to be found wherever there are more individuals. We tested whether proximity to reefs influenced patterns in the composition and diversity (‘species density’ = number of species per area and ‘species richness’ = number of species per number of individuals) of prosobranch gastropods in meadows of two seagrasses with different physiognomy: Posidonia and Amphibolis. A change in the species composition was observed from reef-seagrass edges towards the interiors of Amphibolis, but not in Posidonia meadows. Similarly, the abundance of gastropods and species density was higher at edges relative to interiors of Amphibolis meadows, but not in Posidonia meadows. However, species richness was not affected by proximity to reefs in either type of seagrass meadow. The higher number of species at the reef-Amphibolis edge was therefore a consequence of higher abundance, rather than species richness per se. These results suggest that patterns in the composition and diversity of fauna with proximity to adjacent habitats, and the underlying processes that they reflect, likely depend on the physiognomy of the habitat. PMID:21629654

  15. Gradients in the number of species at reef-seagrass ecotones explained by gradients in abundance.

    Directory of Open Access Journals (Sweden)

    Fernando Tuya

    Full Text Available Gradients in the composition and diversity (e.g. number of species of faunal assemblages are common at ecotones between juxtaposed habitats. Patterns in the number of species, however, can be confounded by patterns in abundance of individuals, because more species tend to be found wherever there are more individuals. We tested whether proximity to reefs influenced patterns in the composition and diversity ('species density'  =  number of species per area and 'species richness'  =  number of species per number of individuals of prosobranch gastropods in meadows of two seagrasses with different physiognomy: Posidonia and Amphibolis. A change in the species composition was observed from reef-seagrass edges towards the interiors of Amphibolis, but not in Posidonia meadows. Similarly, the abundance of gastropods and species density was higher at edges relative to interiors of Amphibolis meadows, but not in Posidonia meadows. However, species richness was not affected by proximity to reefs in either type of seagrass meadow. The higher number of species at the reef-Amphibolis edge was therefore a consequence of higher abundance, rather than species richness per se. These results suggest that patterns in the composition and diversity of fauna with proximity to adjacent habitats, and the underlying processes that they reflect, likely depend on the physiognomy of the habitat.

  16. Conditioning the full-waveform inversion gradient to welcome anisotropy

    KAUST Repository

    Alkhalifah, Tariq Ali

    2015-04-23

    Multiparameter full-waveform inversion (FWI) suffers from complex nonlinearity in the objective function, compounded by the eventual trade-off between the model parameters. A hierarchical approach based on frequency and arrival time data decimation to maneuver the complex nonlinearity associated with this problem usually falls short in anisotropic media. In place of data decimation, I use a model gradient filter approach to access the parts of the gradient more suitable to combat the potential nonlinearity and parameter trade-off. The filter is based on representing the gradient in the time-lag normalized domain, in which small scattering-angles of the gradient update are initially muted out. The model update hierarchical filtering strategy include applying varying degrees of filtering to the different anisotropic parameter updates, a feature not easily accessible to simple data decimation. Using FWI and reflection-based FWI, when the modeled data are obtained with the single-scattering theory, allows access to additional low model wavenumber components. Combining such access to wavenumbers with scattering-angle filters applied to the individual parameter gradients allows for multiple strategies to avoid complex FWI nonlinearity as well as the parameter trade-off.

  17. Build Axial Gradient Field by Using Axial Magnetized Permanent Rings

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    Axial magnetic field produced by an axial magnetized permanent ring was studied. For two permanent rings, if they are magnetized in the same directions, a nearly uniform axial field can be produced. If they are magnetized in opposite direction,an axial gradient magnetic field can be generated, with the field range changing from -B0 to B0. A permanent magnet with a high axial gradient field was fabricated, the measured results agree with the PANDIRA calculation very well. For wider usage,it is desirable for the field gradient to be changed. Some methods to produce the variable gradient field are presented. These kinds of axial gradient magnetic field can also be used as a beam focusing for linear accelerator if the periodic field can be produced along the beam trajectory. The axial magnetic field is something like a solenoid, large stray field will leak to the outside environment if no method is taken to control them. In this paper, one method is illustrated to shield off the outside leakage field.

  18. Combinatorial MAPLE gradient thin film assemblies signalling to human osteoblasts

    International Nuclear Information System (INIS)

    There is increased interest in smart bioactive materials to control tissue regeneration for the engineering of cell instructive scaffolds. We introduced combinatorial matrix-assisted pulsed laser evaporation (C-MAPLE) as a new method for the fabrication of organic thin films with a compositional gradient. Synchronized C-MAPLE of levan and oxidized levan was employed to assemble a two-compound biopolymer film structure. The gradient of the film composition was validated by fluorescence microscopy. In this study, we investigated the cell response induced by the compositional gradient using imaging of early osteoblast attachment and analysis of signalling phosphoprotein expression. Cells attached along the gradient in direct proportion to oxidized levan concentration. During this process distinct areas of the binary gradient have been shown to modulate the osteoblasts’ extracellular signal-regulated kinase signalling with different propensity. The proposed fabrication method results in the preparation of a new bioactive material, which could control the cell signalling response. This approach can be extended to screen new bioactive interfaces for tissue regeneration. (papers)

  19. Combinatorial MAPLE gradient thin film assemblies signalling to human osteoblasts.

    Science.gov (United States)

    Axente, Emanuel; Sima, Felix; Elena Sima, Livia; Erginer, Merve; Eroglu, Mehmet S; Serban, Natalia; Ristoscu, Carmen; Petrescu, Stefana M; Toksoy Oner, Ebru; Mihailescu, Ion N

    2014-09-01

    There is increased interest in smart bioactive materials to control tissue regeneration for the engineering of cell instructive scaffolds. We introduced combinatorial matrix-assisted pulsed laser evaporation (C-MAPLE) as a new method for the fabrication of organic thin films with a compositional gradient. Synchronized C-MAPLE of levan and oxidized levan was employed to assemble a two-compound biopolymer film structure. The gradient of the film composition was validated by fluorescence microscopy. In this study, we investigated the cell response induced by the compositional gradient using imaging of early osteoblast attachment and analysis of signalling phosphoprotein expression. Cells attached along the gradient in direct proportion to oxidized levan concentration. During this process distinct areas of the binary gradient have been shown to modulate the osteoblasts' extracellular signal-regulated kinase signalling with different propensity. The proposed fabrication method results in the preparation of a new bioactive material, which could control the cell signalling response. This approach can be extended to screen new bioactive interfaces for tissue regeneration. PMID:24867882

  20. Avoiding vacuum arcs in high gradient normal conducting RF structures

    CERN Document Server

    Sjøbæk, Kyrre Ness; Adli, Erik; Grudiev, Alexej; Wuensch, Walter

    In order to build the Compact LInear Collider (CLIC), accelerating structures reaching extremely high accelerating gradients are needed. Such structures have been built and tested using normal-conducting copper, powered by X-band RF power and reaching gradients of 100 MV/m and above. One phenomenon that must be avoided in order to reliably reach such gradients, is vacuum arcs or “breakdowns”. This can be accomplished by carefully designing the structure geometry such that high surface fields and large local power flows are avoided. The research presented in this thesis presents a method for optimizing the geometry of accelerating structures so that these breakdowns are made less likely, allowing the structure to operate reliably at high gradients. This was done primarily based on a phenomenological scaling model, which predicted the maximum gradient as a function of the break down rate, pulse length, and field distribution in the structure. The model is written in such a way that it allows direct comparis...

  1. Optimization in Quaternion Dynamic Systems: Gradient, Hessian, and Learning Algorithms.

    Science.gov (United States)

    Xu, Dongpo; Xia, Yili; Mandic, Danilo P

    2016-02-01

    The optimization of real scalar functions of quaternion variables, such as the mean square error or array output power, underpins many practical applications. Solutions typically require the calculation of the gradient and Hessian. However, real functions of quaternion variables are essentially nonanalytic, which are prohibitive to the development of quaternion-valued learning systems. To address this issue, we propose new definitions of quaternion gradient and Hessian, based on the novel generalized Hamilton-real (GHR) calculus, thus making a possible efficient derivation of general optimization algorithms directly in the quaternion field, rather than using the isomorphism with the real domain, as is current practice. In addition, unlike the existing quaternion gradients, the GHR calculus allows for the product and chain rule, and for a one-to-one correspondence of the novel quaternion gradient and Hessian with their real counterparts. Properties of the quaternion gradient and Hessian relevant to numerical applications are also introduced, opening a new avenue of research in quaternion optimization and greatly simplified the derivations of learning algorithms. The proposed GHR calculus is shown to yield the same generic algorithm forms as the corresponding real- and complex-valued algorithms. Advantages of the proposed framework are illuminated over illustrative simulations in quaternion signal processing and neural networks. PMID:26087504

  2. Mathematical modelling of digit specification by a sonic hedgehog gradient

    KAUST Repository

    Woolley, Thomas E.

    2013-11-26

    Background: The three chick wing digits represent a classical example of a pattern specified by a morphogen gradient. Here we have investigated whether a mathematical model of a Shh gradient can describe the specification of the identities of the three chick wing digits and if it can be applied to limbs with more digits. Results: We have produced a mathematical model for specification of chick wing digit identities by a Shh gradient that can be extended to the four digits of the chick leg with Shh-producing cells forming a digit. This model cannot be extended to specify the five digits of the mouse limb. Conclusions: Our data suggest that the parameters of a classical-type morphogen gradient are sufficient to specify the identities of three different digits. However, to specify more digit identities, this core mechanism has to be coupled to alternative processes, one being that in the chick leg and mouse limb, Shh-producing cells give rise to digits; another that in the mouse limb, the cellular response to the Shh gradient adapts over time so that digit specification does not depend simply on Shh concentration. Developmental Dynamics 243:290-298, 2014. © 2013 Wiley Periodicals, Inc.

  3. Fabrication of microscale materials with programmable composition gradients.

    Science.gov (United States)

    Laval, Cédric; Bouchaudy, Anne; Salmon, Jean-Baptiste

    2016-04-01

    We present an original microfluidic technique coupling pervaporation and the use of Quake valves to fabricate microscale materials (∼10 × 100 μm(2) × 1 cm) with composition gradients along their longest dimension. Our device exploits pervaporation of water through a thin poly(dimethylsiloxane) (PDMS) membrane to continuously pump solutions (or dispersions) contained in different reservoirs connected to a microfluidic channel. This pervaporation-induced flow concentrates solutes (or particles) at the tip of the channel up to the formation of a dense material. The latter invades the channel as it is constantly enriched by an incoming flux of solutes/particles. Upstream Quake valves are used to select which reservoir is connected to the pervaporation channel and thus which solution (or dispersion) enriches the material during its growth. The microfluidic configuration of the pervaporation process is used to impose controlled growth along the channel thus enabling one to program spatial composition gradients using appropriate actuations of the valves. We demonstrate the possibilities offered by our technique through the fabrication of dense assemblies of nanoparticles and polymer composites with programmed gradients of fluorescent dyes. We also address the key issue of the spatial resolution of our gradients and we show that well-defined spatial modulations down to ≈50 μm can be obtained within colloidal materials, whereas gradients within polymer materials are resolved on length scales down to ≈1 mm due to molecular diffusion. PMID:26931112

  4. Diffusion tensor imaging with multiple diffusion-weighted gradient directions

    Institute of Scientific and Technical Information of China (English)

    Shan Jiang; Meixia Liu; Tong Han; Weihua Liu

    2011-01-01

    Diffusion tensor MRI (DT-MRI or DTI) is emerging as an important non-invasive technology for elucidating internal brain structures.It has recently been utilized to diagnose a series of diseases that affect the integrity of neural systems to provide a basis for neuroregenerative studies.Results from the present study suggested that neural tissue is reconstructed with multiple diffusion-weighted gradient directions DTI,which varies from traditional imaging methods that utilize 6 gradient directions.Simultaneously,the diffusion tensor matrix is obtained by multiple linear regressions from an equation of echo signal intensity.The condition number value and standard deviation of fractional anisotropy for each scheme can be used to evaluate image quality.Results demonstrated that increasing gradient direction to some extent resulted in improved effects.Therefore,the traditional 6 and 15 directions should not be considered optimal scan protocols for clinical DTI application.In a scheme with 20 directions,the condition number and standard deviation of fractional anisotropy of the encoding gradients matrix were significantly reduced,and resulted in more clearly and accurately displayed neural tissue.Results demonstrated that the scheme with 20diffusion gradient directions provided better accuracy of structural renderings and could be an optimal scan protocol for clinical DTI application.

  5. Coastal microbial mat diversity along a natural salinity gradient.

    Directory of Open Access Journals (Sweden)

    Henk Bolhuis

    Full Text Available The North Sea coast of the Dutch barrier island of Schiermonnikoog is covered by microbial mats that initiate a succession of plant communities that eventually results in the development of a densely vegetated salt marsh. The North Sea beach has a natural elevation running from the low water mark to the dunes resulting in gradients of environmental factors perpendicular to the beach. These gradients are due to the input of seawater at the low water mark and of freshwater from upwelling groundwater at the dunes and rainfall. The result is a natural and dynamic salinity gradient depending on the tide, rainfall and wind. We studied the microbial community composition in thirty three samples taken every ten meters along this natural salinity gradient by using denaturing gradient gel electrophoresis (DGGE of rRNA gene fragments. We looked at representatives from each Domain of life (Bacteria, Archaea and Eukarya and with a particular emphasis on Cyanobacteria. Analysis of the DGGE fingerprints together with pigment composition revealed three distinct microbial mat communities, a marine community dominated by diatoms as primary producers, an intermediate brackish community dominated by Cyanobacteria as primary producers and a freshwater community with Cyanobacteria and freshwater green algae.

  6. Variation of hydraulic gradient in nonlinear finite strain consolidation

    Institute of Scientific and Technical Information of China (English)

    谢新宇; 黄杰卿; 王文军; 李金柱

    2014-01-01

    In the research field of ground water, hydraulic gradient is studied for decades. In the consolidation field, hydraulic gradient is yet to be investigated as an important hydraulic variable. So, the variation of hydraulic gradient in nonlinear finite strain consolidation was focused on in this work. Based on lab tests, the nonlinear compressibility and nonlinear permeability of Ningbo soft clay were obtained. Then, a strongly nonlinear governing equation was derived and it was solved with the finite element method. Afterwards, the numerical analysis was performed and it was verified with the existing experiment for Hong Kong marine clay. It can be found that the variation of hydraulic gradient is closely related to the magnitude of external load and the depth in soils. It is interesting that the absolute value of hydraulic gradient (AVHG) increases rapidly first and then decreases gradually after reaching the maximum at different depths of soils. Furthermore, the changing curves of AVHG can be roughly divided into five phases. This five-phase model can be employed to study the migration of pore water during consolidation.

  7. Optimization in Quaternion Dynamic Systems: Gradient, Hessian, and Learning Algorithms.

    Science.gov (United States)

    Xu, Dongpo; Xia, Yili; Mandic, Danilo P

    2016-02-01

    The optimization of real scalar functions of quaternion variables, such as the mean square error or array output power, underpins many practical applications. Solutions typically require the calculation of the gradient and Hessian. However, real functions of quaternion variables are essentially nonanalytic, which are prohibitive to the development of quaternion-valued learning systems. To address this issue, we propose new definitions of quaternion gradient and Hessian, based on the novel generalized Hamilton-real (GHR) calculus, thus making a possible efficient derivation of general optimization algorithms directly in the quaternion field, rather than using the isomorphism with the real domain, as is current practice. In addition, unlike the existing quaternion gradients, the GHR calculus allows for the product and chain rule, and for a one-to-one correspondence of the novel quaternion gradient and Hessian with their real counterparts. Properties of the quaternion gradient and Hessian relevant to numerical applications are also introduced, opening a new avenue of research in quaternion optimization and greatly simplified the derivations of learning algorithms. The proposed GHR calculus is shown to yield the same generic algorithm forms as the corresponding real- and complex-valued algorithms. Advantages of the proposed framework are illuminated over illustrative simulations in quaternion signal processing and neural networks.

  8. Cell adhesion on ligand gradient substrates: a thermodynamic study.

    Science.gov (United States)

    Sarvestani, Alireza S

    2010-01-01

    Gradient distribution of bio-adhesive proteins can regulate multiple cellular processes, including adhesion, growth, and migration. The ability to control the cell function by changing the surface density of immobilized ligands has become increasingly important in design of implantable medical devices and tissue regenerating scaffolds. Recent techniques in fabrication of substrates with controlled surface properties allow the examination of cell sensitivity to a wide range of adhesion gradients. Understanding the mechanisms by which cells sense and respond to these directional cues warrants a quantitative assessment of macroscopic cellular response to the surface gradients, supported by predictive theoretical models. This article presents a theoretical basis to examine the effect of ligand gradients on cellular adhesion, using an equilibrium thermodynamic model. The model facilitates a systematic investigation of the complex interplay of cell-substrate specific adhesions, non-specific repulsions, and membrane elasticity. This purely mechanistic model predicts a biphasic dependence between the extent of cell spreading and its position across the gradient substrate. PMID:19701944

  9. Chemical Abundance Gradients in the Star-forming Ring Galaxies

    Science.gov (United States)

    Korchagin, Vladimir; Vorobyov, Eduard; Mayya, Y. D.

    1999-09-01

    Ring waves of star formation, propagating outward in the galactic disks, leave chemical abundance gradients in their wakes. We show that the relative [Fe/O] abundance gradients in ring galaxies can be used as a tool for determining the role of the SN Ia explosions in their chemical enrichment. We consider two mechanisms--a self-induced wave and a density wave--that can create outwardly propagating star-forming rings in a purely gaseous disk and demonstrate that the radial distribution of the relative [Fe/O] abundance gradients depends neither on the particular mechanism of the wave formation anor on the parameters of the star-forming process. We show that the [Fe/O] profile is determined by the velocity of the wave, the initial mass function, and the initial chemical composition of the star-forming gas. If the role of SN Ia explosions is negligible in the chemical enrichment, the ratio [Fe/O] remains constant throughout the galactic disk with a steep gradient at the wave front. If SN Ia stars are important in the production of cosmic iron, the [Fe/O] ratio has a gradient in the wake of the star-forming wave with the value depending on the frequency of SN Ia explosions.

  10. Gradient gravitational search: An efficient metaheuristic algorithm for global optimization.

    Science.gov (United States)

    Dash, Tirtharaj; Sahu, Prabhat K

    2015-05-30

    The adaptation of novel techniques developed in the field of computational chemistry to solve the concerned problems for large and flexible molecules is taking the center stage with regard to efficient algorithm, computational cost and accuracy. In this article, the gradient-based gravitational search (GGS) algorithm, using analytical gradients for a fast minimization to the next local minimum has been reported. Its efficiency as metaheuristic approach has also been compared with Gradient Tabu Search and others like: Gravitational Search, Cuckoo Search, and Back Tracking Search algorithms for global optimization. Moreover, the GGS approach has also been applied to computational chemistry problems for finding the minimal value potential energy of two-dimensional and three-dimensional off-lattice protein models. The simulation results reveal the relative stability and physical accuracy of protein models with efficient computational cost. PMID:25779670

  11. Simulation of a Microfluidic Gradient Generator using Lattice Boltzmann Methods

    CERN Document Server

    Simon, Tanaka

    2013-01-01

    Microfluidics provides a powerful and versatile technology to accurately control spatial and temporal conditions for cell culturing and can therefore be used to study cellular responses to gradients. Here we use Lattice Boltzmann methods (LBM) to solve both the Navier-Stokes equation (NSE) for the fluid and the coupled convection-diffusion equation (CDE) for the compounds that form the diffusion-based gradient. The design of a microfluidic chamber for diffusion-based gradients must avoid flow through the cell chamber. This can be achieved by alternately opening the source and the sink channels. The fast toggling of microfluidic valves requires switching between different boundary conditions. We demonstrate that the LBM is a powerful method for handling complex geometries, high Peclet number conditions, discontinuities in the boundary conditions, and multiphysics coupling.

  12. Homogenization of temperature field and temperature gradient field

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    The homogenization of temperature field and temperature gradient field are very important for many devices, systems and equipments, such as satellites and electronic devices. This paper discusses the distribution optimization of the limited high conductivity material with the simulated annealing algorithm to homogenize the temperature field in a two-dimensional heat conduction problem. At the same time, the temperature gradient field is homogenized with the bionic optimization method. The results show that the two optimization targets are consistent to some extent, while the bionic optimization method could save much computing time. In addition, there are threshold values for the amount of high conductivity material and the ratio of the high conductivity to the low conductivity beyond which further increasing these values brings very little improvement on the homogenization of temperature field and temperature gradient field.

  13. Density gradients in ceramic pellets measured by computed tomography

    International Nuclear Information System (INIS)

    Density gradients are of fundamental importance in ceramic processing and computed tomography (CT) can provide accurate measurements of density profiles in sintered and unsintered ceramic parts. As a demonstration of this potential, the density gradients in an unsintered pellet pressed from an alumina powder were measured by CT scanning. To detect such small density gradients, the CT images must have good density resolution and be free from beam-hardening effects. This was achieved by measuring high-contrast (low-noise) images with the use of an Ir-192 isotopic source. A beam-hardening correction was applied. The resulting images are discussed relative to the transmission of forces through the powder mass during the pelletizing process

  14. Symanzik improvement of the gradient flow in lattice gauge theories

    CERN Document Server

    Ramos, A

    2016-01-01

    We apply the Symanzik improvement programme to the 4+1-dimensional local re-formulation of the gradient flow in pure $SU(N)$ lattice gauge theories. We show that the classical nature of the flow equation allows to eliminate all cutoff effects at $\\mathcal O(a^2)$ which originate either from the discretized gradient flow equation or from the gradient flow observable. All the remaining $\\mathcal O(a^2)$ effects can be understood in terms of local counterterms at the zero flow time boundary. We classify these counterterms and provide a complete set as required for on-shell improvement. Compared to the 4-dimensional pure gauge theory only a single additional counterterm is required, which corresponds to a modified initial condition for the flow equation. A consistency test in perturbation theory is passed and allows to determine all counterterm coefficients to lowest non-trivial order in the coupling.

  15. Pressure Gradient Estimation Based on Ultrasonic Blood Flow Measurement

    Science.gov (United States)

    Nitta, Naotaka; Homma, Kazuhiro; Shiina, Tsuyoshi

    2006-05-01

    Mechanical load to the blood vessel wall, such as shear stress and pressure, which occurs in blood flow dynamics, contribute greatly to plaque rupture in arteriosclerosis and to biochemical activation of endothelial cells. Therefore, noninvasive estimations of these mechanical loads are able to provide useful information for the prevention of vascular diseases. Although the pressure is the dominant component of mechanical load, for practical purposes, the pressure gradient is also often important. So far, we have investigated the estimation of the kinematic viscosity coefficient using a combination of the Navier-Stokes equations and ultrasonic velocity measurement. In this paper, a method for pressure gradient estimation using the estimated kinematic viscosity coefficient is proposed. The validity of the proposed method was investigated on the basis of the analysis with the data obtained by computer simulation and a flow phantom experiment. These results revealed that the proposed method can provide a valid estimation of the pressure gradient.

  16. FAST NAS-RIF ALGORITHM USING ITERATIVE CONJUGATE GRADIENT METHOD

    Directory of Open Access Journals (Sweden)

    A.M.Raid

    2014-04-01

    Full Text Available Many improvements on image enhancemen have been achieved by The Non-negativity And Support constraints Recursive Inverse Filtering (NAS-RIF algorithm. The Deterministic constraints such as non negativity, known finite support, and existence of blur invariant edges are given for the true image. NASRIF algorithms iterative and simultaneously estimate the pixels of the true image and the Point Spread Function (PSF based on conjugate gradients method. NAS-RIF algorithm doesn’t assume parametric models for either the image or the blur, so we update the parameters of conjugate gradient method and the objective function for improving the minimization of the cost function and the time for execution. We propose a different version of linear and nonlinear conjugate gradient methods to obtain the better results of image restoration with high PSNR.

  17. Constrained optimization of gradient waveforms for generalized diffusion encoding

    Science.gov (United States)

    Sjölund, Jens; Szczepankiewicz, Filip; Nilsson, Markus; Topgaard, Daniel; Westin, Carl-Fredrik; Knutsson, Hans

    2015-12-01

    Diffusion MRI is a useful probe of tissue microstructure. The conventional diffusion encoding sequence, the single pulsed field gradient, has recently been challenged as more general gradient waveforms have been introduced. Out of these, we focus on q-space trajectory imaging, which generalizes the scalar b-value to a tensor valued entity. To take full advantage of its capabilities, it is imperative to respect the constraints imposed by the hardware, while at the same time maximizing the diffusion encoding strength. We provide a tool that achieves this by solving a constrained optimization problem that accommodates constraints on maximum gradient amplitude, slew rate, coil heating and positioning of radio frequency pulses. The method's efficacy and flexibility is demonstrated both experimentally and by comparison with previous work on optimization of isotropic diffusion sequences.

  18. A thermodynamic force generated by chemical gradient and adsorption reaction

    CERN Document Server

    Sugawara, Takeshi

    2009-01-01

    Biological units such as macromolecules, organelles, and cells are directed to a proper location under gradients of relevant chemicals. By considering a macroscopic element that has binding sites for a chemical adsorption reaction to occur on its surface, we show the existence of a thermodynamic force that is generated by the gradient and exerted on the element. By assuming local equilibrium and adopting the grand potential from thermodynamics, we derive a formula for such a thermodynamic force, which depends on the chemical potential gradient and Langmuir isotherm. The conditions under which the formula can be applied are demonstrated to hold in intracellular reactions. The role of the force in the partitioning of bacterial chromosome/plasmid during cell division is discussed.

  19. Symanzik improvement of the gradient flow in lattice gauge theories

    Energy Technology Data Exchange (ETDEWEB)

    Ramos, Alberto [PH-TH, CERN, Geneva (Switzerland); Sint, Stefan [Trinity College Dublin, School of Mathematics, Dublin (Ireland)

    2016-01-15

    We apply the Symanzik improvement programme to the 4 + 1-dimensional local re-formulation of the gradient flow in pure SU(N) lattice gauge theories. We show that the classical nature of the flow equation allows one to eliminate all cutoff effects at O(a{sup 2}), which originate either from the discretised gradient flow equation or from the gradient flow observable. All the remaining O(a{sup 2}) effects can be understood in terms of local counterterms at the zero flow-time boundary. We classify these counterterms and provide a complete set as required for on-shell improvement. Compared to the 4-dimensional pure gauge theory only a single additional counterterm is required, which corresponds to a modified initial condition for the flow equation. A consistency test in perturbation theory is passed and allows one to determine all counterterm coefficients to lowest non-trivial order in the coupling. (orig.)

  20. Bioinspired Mechanical Gradients in Cellulose Nanofibril/Polymer Nanopapers.

    Science.gov (United States)

    Wang, Baochun; Benitez, Alejandro J; Lossada, Francisco; Merindol, Remi; Walther, Andreas

    2016-05-10

    Mechanical gradients are important as tough joints, for strain field engineering in printable electronics, for actuators, and for biological studies, yet they are difficult to prepare and quantitatively characterize. We demonstrate the additive fabrication of gradient bioinspired nanocomposites based on stiff, renewable cellulose nanofibrils that are bottom-up toughened via a tailor-made copolymer. Direct filament writing of different nanocomposite hydrogels in patterns, and subsequent healing of the filaments into continuous films while drying leads to a variety of linear, parabolic and striped bulk gradients. In situ digital image correlation under tensile deformation reveals important differences in the strain fields regarding asymmetry and step heights of the patterns. We envisage that merging top-down and bottom-up structuring of nanocellulose hybrids opens avenues for aperiodic and multiscale, bioinspired nanocomposites with optimized combinations of stiffness and toughness. PMID:27061218

  1. Two New Gradient Precondition Schemes for Full Waveform Inversion

    CERN Document Server

    Huang, Guanghui; Ren, Haoran

    2014-01-01

    We propose two preconditioned gradient direction for full waveform inversion (FWI). The first one is using time integral wavefields. The Least square problem is formulated as the time integral residual wavefields, which can partially resolve the effect of high-passed filter in the traditional gradient formula; the convergence rate is greatly accelerated. The other one is localized offset Hessian inspired by the generalized imaging condition, which provides another redundancy in the Hessian. We compare the traditional conjugate gradient scaled by the shot illumination and localized offset Hessian (actually, only diagonal part is considered here), and contrast their performance for waveform inversion. The results demonstrate the localized offset Hessian (diagonal part) can provide much more information in the subsurface, and is preferred to the layer-strip inversion.

  2. Enhanced flexural wave sensing by adaptive gradient-index metamaterials

    Science.gov (United States)

    Chen, Y. Y.; Zhu, R.; Barnhart, M. V.; Huang, G. L.

    2016-01-01

    Increasing sensitivity and signal to noise ratios of conventional wave sensors is an interesting topic in structural health monitoring, medical imaging, aerospace and nuclear instrumentation. Here, we report the concept of a gradient piezoelectric self-sensing system by integrating shunting circuitry into conventional sensors. By tuning circuit elements properly, both the quality and quantity of the flexural wave measurement data can be significantly increased for new adaptive sensing applications. Through analytical, numerical and experimental studies, we demonstrate that a metamaterial-based sensing system (MBSS) with gradient bending stiffness can be designed by connecting gradient negative capacitance circuits to an array of piezoelectric patches (sensors). Furthermore, we demonstrate that the proposed system can achieve more than two orders of magnitude amplification of flexural wave signals to overcome the detection limit. This research encompasses fundamental advancements in the MBSS with improved performance and functionalities, and will yield significant advances for a range of applications. PMID:27748379

  3. Enhanced flexural wave sensing by adaptive gradient-index metamaterials

    Science.gov (United States)

    Chen, Y. Y.; Zhu, R.; Barnhart, M. V.; Huang, G. L.

    2016-10-01

    Increasing sensitivity and signal to noise ratios of conventional wave sensors is an interesting topic in structural health monitoring, medical imaging, aerospace and nuclear instrumentation. Here, we report the concept of a gradient piezoelectric self-sensing system by integrating shunting circuitry into conventional sensors. By tuning circuit elements properly, both the quality and quantity of the flexural wave measurement data can be significantly increased for new adaptive sensing applications. Through analytical, numerical and experimental studies, we demonstrate that a metamaterial-based sensing system (MBSS) with gradient bending stiffness can be designed by connecting gradient negative capacitance circuits to an array of piezoelectric patches (sensors). Furthermore, we demonstrate that the proposed system can achieve more than two orders of magnitude amplification of flexural wave signals to overcome the detection limit. This research encompasses fundamental advancements in the MBSS with improved performance and functionalities, and will yield significant advances for a range of applications.

  4. Vertical pressure gradient and particle motions in wave boundary layers

    DEFF Research Database (Denmark)

    Jensen, Karsten Lindegård

    The present study covers both a numerical and experimental investigation of the processes in the oscillatory boundary layer. In the first part a direct numerical simulation (DNS) is conducted to study the vertical pressure gradient, and its role in relation to laminar to turbulent transition...... and its role in the fully turbulent boundary layer. The pressure in the flow is obtained from the flow fields of the oscillatory boundary layer. What differs, the vertical pressure gradient, from other turbulent quantities, like e.g. velocity fluctuations is that it can detect newly generated turbulence....... This is in contrast to velocity fluctuations that are diffusive, so they can also contain residual turbulence from the previous half cycle until they are dissipated. Furthermore, the magnitude of the mean value of conditionally averaged vertical pressure gradient (for −∂p∗/∂x∗ 2 > 0) is compared to the submerged...

  5. Constrained optimization of gradient waveforms for generalized diffusion encoding.

    Science.gov (United States)

    Sjölund, Jens; Szczepankiewicz, Filip; Nilsson, Markus; Topgaard, Daniel; Westin, Carl-Fredrik; Knutsson, Hans

    2015-12-01

    Diffusion MRI is a useful probe of tissue microstructure. The conventional diffusion encoding sequence, the single pulsed field gradient, has recently been challenged as more general gradient waveforms have been introduced. Out of these, we focus on q-space trajectory imaging, which generalizes the scalar b-value to a tensor valued entity. To take full advantage of its capabilities, it is imperative to respect the constraints imposed by the hardware, while at the same time maximizing the diffusion encoding strength. We provide a tool that achieves this by solving a constrained optimization problem that accommodates constraints on maximum gradient amplitude, slew rate, coil heating and positioning of radio frequency pulses. The method's efficacy and flexibility is demonstrated both experimentally and by comparison with previous work on optimization of isotropic diffusion sequences. PMID:26583528

  6. Vacuum membrane distillation by microchip with temperature gradient.

    Science.gov (United States)

    Zhang, Yaopeng; Kato, Shinji; Anazawa, Takanori

    2010-04-01

    A multilayered microchip (25 x 95 mm) used for vacuum distillation is designed, fabricated and tested by rectification of a water-methanol mixture. The polymer chip employs a cooling channel to generate a temperature gradient along a distillation channel below, which is separated into a channel (72 microm deep) for liquid phase and a channel (72 microm deep) for vapor phase by an incorporated microporous poly(tetrafluoroethylene) (PTFE) membrane. The temperature gradient is controlled by adjusting hotplate temperature and flow rate of cooling water to make the temperatures in the stripping section higher than the increasing boiling points of the water-enriched liquids and the temperatures in the rectifying section lower than the decreasing dew points of the methanol-enriched vapors. The effects of temperature gradient, feed composition, feed flow rate and membrane pore size on the micro distillation are also investigated. A theoretical plate number up to 1.8 is achieved at the optimum conditions. PMID:20300677

  7. Electrohydromechanical analysis based on conductivity gradient in microchannel

    Institute of Scientific and Technical Information of China (English)

    Jiang Hong-Yuan; Ren Yu-Kun; Ao Hong-Rui; Antonio Ramos

    2008-01-01

    Fluid manipulation is very important in any lab-on-a-chip system. This paper analyses phenomena which use the alternating current (AC) electric field to deflect and manipulate coflowing streams of two different electrolytes (with conductivity gradient) within a microfluidic channel. The basic theory of the electrohydrodynamics and simulation of the analytical model are used to explain the phenomena. The velocity induced for different voltages and conductivity gradient are computed. The results show that when the AC electrical signal is applied on the electrodes, the fluid with higher conductivity occupies a larger region of the channel and the interface of the two fluids is deflected. It will provide some basic reference for people who want to do more study in the control of different fluids with conductivity gradient in a microfluidic channel.

  8. The pressure gradient in the human respiratory tract

    Science.gov (United States)

    Chovancová, Michaela; Elcner, Jakub

    2014-03-01

    Respiratory airways cause resistance to air flow during inhalation and exhalation. The pressure gradient is necessary to transport the air from the mount (or nose) to pulmonary alveoli. The knowledge of pressure gradient (i.e. respiratory airways resistance) is also needed to solve the question of aerosol deposition in the human respiratory tract. The obtained data will be used as boundary conditions for CFD simulations of aerosol transport. Understanding of aerosol transport in the human lungs can help us to determine the health hazard of harmful particles. On the other hand it can be used to set the conditions for transport of medication to the desirable place. This article deals with the description of the mathematical equations defining the pressure gradient and resistance in the bronchial three and describes the geometry used in the calculation.

  9. Non-invasive measurement of pressure gradients using ultrasound

    DEFF Research Database (Denmark)

    Olesen, Jacob Bjerring; Traberg, Marie Sand; Pihl, Michael Johannes;

    2013-01-01

    for isotropic fluids to the estimated velocity fields. The velocity fields were measured for a steady flow on a carotid bifurcation phantom (Shelley Medical, Canada) with a 70% constriction on the internal branch. Scanning was performed with a BK8670 linear transducer (BK Medical, Denmark) connected to a BK......A non-invasive method for estimating 2-D pressure gradients from ultrasound vector velocity data is presented. The method relies on in-plane vector velocity fields acquired using the Transverse Oscillation method. The pressure gradients are estimated by applying the Navier-Stokes equations...... Medical 2202 UltraView Pro Focus scanner. The results are validated through finite element simulations of the carotid flow model where the geometry is determined from MR images. This proof of concept study was conducted at nine ultrasound frames per second. Estimated pressure gradients along...

  10. Covalently immobilized gelatin gradients within three-dimensional porous scaffolds

    Institute of Scientific and Technical Information of China (English)

    WU JinDan; TAN HuaPing; LI LinHui; GAO ChangYou

    2009-01-01

    A stable gelatin gradient providing continuous increment of signaling for cell adhesion and proliferation was fabricated within 3D poly(L-lactic acid) (PLLA) scaffolds. The porous PLLA scaffold fabricated by NaCI particle leaching was vertically fixed on a glass vial. 1,6-Hexanediamine/propanol solution was continuously injected into the vial by a micropump to aminolyze the PLLA scaffold. As a result of reaction time difference,the introduced-NH2 groups increased continuously along with the longitude of the PLLA scaffold in the z-direction. After covalent immobilization of gelatin by glutaraldehyde coupling,the gelatin gradient scaffold was thus obtained. In vitro chondrocyte culture showed that the cells had higher viability and more extending morphology in the gelatin gradient scaffold than that in the uniform gelatin control.

  11. Dissipation gradients of phenanthrene and pyrene in the Rice rhizosphere

    International Nuclear Information System (INIS)

    An experiment was conducted to reveal the effects of rice cultivation as well as polycyclic aromatic carbohydrates (PAHs) degrading bacterium (Acinetobacter sp.) on the dissipation gradients of two PAHs (PHE and PYR) in the rhizosphere. The results showed that the presence of rice root and bacteria significantly accelerated the dissipation rate of PHE and PYR. The root exudates contributed to the formation of dissipation gradients of PHE and PYR along the vertical direction of roots, with a higher dissipation rate in the rhizosphere and near rhizosphere zone than the soil far away the rhizosphere. - The formation of dissipation gradients of PAHs were attributed to the presence of rice root and the degrading bacteria in paddy soil.

  12. Interleaving Gradient Magnetic Field Method for Diffusion Weighted Spectroscopy

    Institute of Scientific and Technical Information of China (English)

    GAO Song; ZU Zhong-Liang; BAO Shang-Lian

    2008-01-01

    Diffusion-weighted magnetic resonance spectroscopy(DWS)has considerable potential in clinical and research applications.However.it is seldom implemented in conventional magnetic resonance imaging(MRI)scanners due to the strict hardware requirements.We propose an interleaving gradient magnetic field(IGMF)method based on point resolved spectroscopy(PRESS).Four interlaced powerful diffusion sensitive gradient magnetic fields are positioned around the two πrefocusing rf pulses in the PRESS sequence.This method utilizes the interval time in the PRESS pulse sequence,doubles the duration time of the diffusion sensitive gradient magnetic field and decreases the detrimental effect of the induced eddy current.The results of theoretical analysis and experimental observation demonstrate that the IGMF method is suitable for conventional MRI scanners.

  13. Fabrication and evaluation of uniform and gradient density epoxies

    Energy Technology Data Exchange (ETDEWEB)

    Domeier, L.A.; Skala, D.M.; Goods, S.H. [and others

    1997-11-01

    Filled epoxy materials which vary in density in a designed manner have been fabricated and their mechanical properties evaluated. Density variations were produced by incorporating different volume fractions of either glass microballoons (GMB) or alumina. Several different sample types were evaluated including uniform density (0.8 g/cm{sup 3} < {rho} < 2.0 g/cm{sup 3}) samples and gradient density samples (GMB only, 0.8 g/cm{sup 3} < {rho} < 1.2 g/cm{sup 3}). The uniform density specimens were evaluated for the effects of filler type and concentration on modulus and toughness. Results indicated that addition of alumina filler significantly increased the resulting modulus while addition of GMB had little measurable effect. These differences could be understood in terms of the differing moduli of the additives relative to that of the epoxy matrix. In the former case the alumina particulates had a modulus much greater than that of the epoxy while in the latter case, the modulus of the GMB additive was only slightly greater than that of the matrix. Addition of either filler significantly degraded the toughness of the composite specimens and precluded the use of gradients to enhance toughness performance. Discontinuous {open_quotes}block{close_quotes} gradients used for testing were fabricated by simple sequential pours of formulations with different GMB loadings and were evaluated for modulus, strength and ductility. Continuous gradients were fabricated in process studies by programmed shifts in the peristaltic pumping/mixing ratio of epoxies filled with either alumina or GMB. None of the continuous gradient materials were mechanically tested. These results suggest that applications utilizing gradient materials containing alumina and similar high modulus fillers to provide designed stiffness rather than improved toughness are the most appropriate targets for future investigation.

  14. Low gradient ascites: A seven-year course review

    Institute of Scientific and Technical Information of China (English)

    Fariborz Mansour-Ghanaei; Afshin Shafaghi; Amir-Hossein Bagherzadeh; Mohammad-Sadegh Fallah

    2005-01-01

    AIM: To study the patients with low gradient ascites in hospitals of Guilan Province (northern Iran).METHODS: Patients admitted in hospitals of Guilan Province with low gradient ascites from 1993 to 2000 were enrolled in the study. Serum and ascitic fluid albumin levels were determined by biochemical reactions. The serum-ascitic albumin gradient (SAAG) less than 1.1 g/dL was considered low. Statistical analysis was performed with SPSS 9.0software and P<0.05 was considered statistically significant.RESULTS: Of the 148 patients enrolled in the study, 72(48.6%) were males and 76 (51.4%) were females with a mean age of 59.03±13.54 years. Tuberculous peritonitis was the most frequent cause of low gradient ascites in 68 (45.9%). Other most frequent causes were cancer in 62 (41.9%), nephrotic syndrome in 9 (6%), pancreatitis in 6 (4%). Peritoneal cancer was found in 22 (35%),ovarian and gastric cancers were found in 14 (22.5%)and 12 (19.3%), respectively. All of which were the causes of ascites. The mean SAAG was 0.68±0.19 g/dL. The mean serum and ascitic fluid albumin concentrations were higher in tuberculous patients (P<0.006), but lactate dehydrogenase (LDH) level was higher in cancer patients (P<0.0001). In peritoneal tuberculosis, mean ascitic glucose concentration was significantly lower than other patients (P<0.0001).CONCLUSION: Tuberculosis should be considered in all patients with low gradient ascites especially in developing countries (like Iran), as the first cause of ascites. In the approach to patients with low gradient ascites, ascitic fluid glucose, and LDH level are useful indicators for decision making.

  15. Separation of colloidal two dimensional materials by density gradient ultracentrifugation

    International Nuclear Information System (INIS)

    Two-dimensional (2D) materials have been made through various approaches but obtaining monodispersed simply by synthesis optimization gained little success, which highlighted the need for introducing nanoseparation methods. Density gradient ultracentrifugation method has emerged as a versatile and scalable method for sorting colloidal 2D nanomaterials. Isopycnic separation was applied on thickness-dependent separation of graphene nanosheets. And rate-zonal separation, as a more versatile separation method, demonstrated its capability in sorting nanosheets of chemically modified single layered graphene, layered double hydroxide, and even metallic Ag. Establishing such density gradient ultracentrifugation method not only achieves monodispersed nanosheets and provides new opportunities for investigation on size dependent properties of 2D materials, but also makes the surface modification possible by introducing “reaction zones” during sedimentation of the colloids. - Graphical abstract: Two-dimensional (2D) materials have been made through various approaches but obtaining monodispersed simply by synthesis optimization gained little success, which highlighted the need for introducing nanoseparation methods. Density gradient ultracentrifugation method has emerged as a versatile and scalable method for sorting colloidal 2D nanomaterials according to their size of thickness difference. Establishing such density gradient ultracentrifugation method not only achieves monodispersed nanosheets and provides new opportunities for investigation on size dependent properties of 2D materials, but also makes the surface modification possible by introducing “reaction zones” during sedimentation of the colloids. - Highlights: • Density gradient ultracentrifugation was applied on size separation of 2D material. • Isopycnic separation was applied on separation of low density materials. • Rate-zonal separation was applied on separation of large density materials. • Size

  16. Intraguild predation may reinforce a species-environment gradient

    Science.gov (United States)

    MacNeil, Calum; Dick, Jaimie T. A.

    2012-05-01

    Species-environment gradients are ubiquitous in nature, with studies often partially explaining the replacement of species along such gradients by autecological factors such as differential physiological tolerances. However, lacking direct evidence, the majority of studies only infer some form of inter-specific interaction, often competition, as reinforcing these gradients. There is usually the further implication that environmental factors mediate asymmetries in the interaction. Recognising the lack of explicit experimental considerations of how key inter-specific interactions are modified by the environment, we chose a study system where we were able to bring the species in question into the laboratory and conduct experiments to test hypotheses about gradient-induced asymmetries in an inter-specific interaction. To this end, we tested the hypothesis that a species-salinity gradient may be reinforced by changes in the asymmetry of intraguild predation between two species of amphipod crustaceans with wide salinity tolerances. River and estuary surveys showed that Gammarus duebeni and Gammarus zaddachi have overlapping distributions, with both surviving and reproducing in salinities ranging from freshwater to fully marine. However, the former species is relatively more abundant in low salinities and the latter in higher salinities. In the laboratory, survival of both species was high in all salinities and cannibalism occurred at low frequencies. However, intraguild predation by males on moulted females was asymmetric in favour of G. duebeni at low salinities, this asymmetry completely reversing to favour G. zaddachi at higher salinities. Thus, we provide evidence that this species-environment gradient occurs due to overlapping physiological tolerances and salinity-driven shifts in the asymmetry of a key inter-specific interaction, intraguild predation.

  17. Opposing environmental gradients govern vegetation zonation in an intermountain playa

    Science.gov (United States)

    Sanderson, J.S.; Kotliar, N.B.; Steingraeber, D.A.

    2008-01-01

    Vegetation zonation was investigated at an intermountain playa wetland (Mishak Lakes) in the San Luis Valley (SLV) of southern Colorado. Plant composition and abiotic conditions were quantified in six vegetation zones. Reciprocal transplants were performed to test the importance of abiotic factors in governing zonation. Abiotic conditions differed among several vegetation zones. Prolonged inundation led to anaerobic soils in the Eleocharis palustris and the submerged aquatics zones, on the low end of the site's 1.25 m elevation gradient. On the high end of the gradient, soil salinity and sodicity (a measure of exchangeable sodium) were high in the Distichlis spicata zone (electrical conductivity, EC = 5.3 dS/m, sodium absorption ratio, SAR = 44.0) and extreme in the Sarcobatus vermiculatus zone (EC = 21 dS/m, SAR = 274). Transplanted species produced maximum biomass in the zone where they originated, not in any other higher or lower vegetation zone. The greatest overall transplant effect occurred for E. palustris, which experienced a ??? 77% decline in productivity when transplanted to other zones. This study provides evidence that physical factors are a major determinant of vegetation zone composition and distribution across the entire elevation gradient at Mishak Lakes. Patterns at Mishak Lakes arise from counter-directional stress gradients: a gradient from anaerobic to well-oxygenated from basin bottom to upland and a gradient from extremely high salinity to low salinity in the opposing direction. Because abiotic conditions dominate vegetation zonation, restoration of the altered hydrologic regime of this wetland to a natural hydrologic regime may be sufficient to re-establish many of the natural biodiversity functions provided by these wetlands. ?? 2008 The Society of Wetland Scientists.

  18. Latitudinal gradients in ecosystem engineering by oysters vary across habitats.

    Science.gov (United States)

    McAfee, Dominic; Cole, Victoria J; Bishop, Melanie J

    2016-04-01

    Ecological theory predicts that positive interactions among organisms will increase across gradients of increasing abiotic stress or consumer pressure. This theory has been supported by empirical studies examining the magnitude of ecosystem engineering across environmental gradients and between habitat settings at local scale. Predictions that habitat setting, by modifying both biotic and abiotic factors, will determine large-scale gradients in ecosystem engineering have not been tested, however. A combination of manipulative experiments and field surveys assessed whether along the east Australian coastline: (1) facilitation of invertebrates by the oyster Saccostrea glomerata increased across a latitudinal gradient in temperature; and (2) the magnitude of this effect varied between intertidal rocky shores and mangrove forests. It was expected that on rocky shores, where oysters are the primary ecosystem engineer, they would play a greater role in ameliorating latitudinal gradients in temperature than in mangroves, where they are a secondary ecosystem engineer living under the mangrove canopy. On rocky shores, the enhancement of invertebrate abundance in oysters as compared to bare microhabitat decreased with latitude, as the maximum temperatures experienced by intertidal organisms diminished. By contrast, in mangrove forests, where the mangrove canopy resulted in maximum temperatures that were cooler and of greater humidity than on rocky shores, we found no evidence of latitudinal gradients of oyster effects on invertebrate abundance. Contrary to predictions, the magnitude by which oysters enhanced biodiversity was in many instances similar between mangroves and rocky shores. Whether habitat-context modifies patterns of spatial variation in the effects of ecosystem engineers on community structure will depend, in part, on the extent to which the environmental amelioration provided by an ecosystem engineer replicates that of other co-occurring ecosystem engineers

  19. Analysis of cell locomotion on ligand gradient substrates.

    Science.gov (United States)

    Sarvestani, Alireza S; Jabbari, Esmaiel

    2009-06-01

    Directional cell motility plays a key role in many biological processes like morphogenesis, inflammation, wound repair, angiogenesis, immune response, and tumor metastasis. Cells respond to the gradient in surface ligand density by directed locomotion towards the direction of higher ligand density. Theoretical models which address the physical basis underlying the regulatory effect of ligand gradient on cell motility are highly desirable. Predictive models not only contribute to a better understanding of biological processes, but they also provide a quantitative interconnection between cell motility and biophysical properties of the extracellular matrix (ECM) for rational design of biomaterials as scaffolds in tissue engineering. In this work, we consider a one-dimensional (1D) continuum viscoelastic model to predict the cell velocity in response to linearly increasing density of surface ligands on a substrate. The cell is considered as a 1D linear viscoelastic object with position dependent elasticity due to the variation in actin network density. The cell-substrate interaction is characterized by a frictional force, controlled by the density of ligand-receptor pairs. The generation of contractile stresses is described in terms of kinetic equations for the reactions between actins, myosins, and guanine nucleotide regulatory proteins. The model predictions show a reasonable agreement with experimentally measured cell speeds, considering biologically relevant values for the model parameters. The model predicts a biphasic relationship between cell speed and slope of gradient as well as a maximum limiting speed after a finite migration time. For a given slope of ligand gradient, the onset of the limiting speed appears at longer times for substrates with lower ligand gradients. The model can be applied to the design of biomaterials as scaffolds for guided tissue regeneration as it predicts an optimum range for the slope of ligand gradient. PMID:19205048

  20. Thermal Gradient Behavior of TBCs Subjected to a Laser Gradient Test Rig: Simulating an Air-to-Air Combat Flight

    Science.gov (United States)

    Lima, Rogerio S.; Marple, Basil R.; Marcoux, P.

    2016-01-01

    A computer-controlled laser test rig (using a CO2 laser) offers an interesting alternative to traditional flame-based thermal gradient rigs in evaluating thermal barrier coatings (TBCs). The temperature gradient between the top and back surfaces of a TBC system can be controlled based on the laser power and a forced air back-face cooling system, enabling the temperature history of complete aircraft missions to be simulated. An air plasma spray-deposited TBC was tested and, based on experimental data available in the literature, the temperature gradients across the TBC system (ZrO2-Y2O3 YSZ top coat/CoNiCrAlY bond coat/Inconel 625 substrate) and their respective frequencies during air-to-air combat missions of fighter jets were replicated. The missions included (i) idle/taxi on the runway, (ii) take-off and climbing, (iii) cruise trajectory to rendezvous zone, (iv) air-to-air combat maneuvering, (v) cruise trajectory back to runway, and (vi) idle/taxi after landing. The results show that the TBC thermal gradient experimental data in turbine engines can be replicated in the laser gradient rig, leading to an important tool to better engineer TBCs.

  1. Plasmonic phase-gradient metasurface for spontaneous emission control

    Science.gov (United States)

    Langguth, L.; Schokker, A. H.; Guo, K.; Koenderink, A. F.

    2015-11-01

    We combine the concept of phase-gradient metasurfaces with fluorescence directionality control of an ensemble of incoherent emitters. We design a periodic metasurface to control the scattering amplitude of the lattice in momentum space. The lattice is embedded in a waveguiding layer doped with organic fluorophores. In contrast to the usual symmetric directionality that plasmonic lattices impart on emission, we find that the phase gradient translates into asymmetric directional emission into the far field, determined by scattering on a subset of the reciprocal lattice vectors. The measured asymmetry is well explained by analytical modeling.

  2. Quasi-two-dimensional Turing patterns in an imposed gradient

    Science.gov (United States)

    Lengyel, István; Kádár, Sándor; Epstein, Irving R.

    1992-11-01

    In experiments on quasi-two-dimensional Turing structures, patterns form perpendicular to a concentration gradient imposed by the boundary conditions. Using linear stability analysis, with the ClO2-I2-MA (malonic acid) reaction as an example, we obtain conditions on the position along the gradient direction and possible three dimensionality of the structures. Experiments on the effects of MA and starch concentrations on the position of the structures support the theory. Simulations taking into account the starch indicator yield Turing patterns even with equal diffusion coefficients for the activator and inhibitor species.

  3. On Higuchi Ghosts and Gradient Instabilities in Bimetric Gravity

    CERN Document Server

    Könnig, Frank

    2015-01-01

    We discuss the conditions to satisfy the Higuchi bound and to avoid gradient instabilities in the scalar sector for cosmological solutions in singly coupled bimetric gravity theories. We find that in expanding universes the ratio of the scale factors of the reference and observable metric has to increase at all times. This automatically implies a ghost-free helicity-2 sector and enforces a phantom Dark Energy. Furthermore, the condition for the absence of gradient instabilities in the scalar sector will be analyzed. Finally, we discuss whether cosmological solutions, including exotic evolutions like bouncing cosmologies, can exist, in which both the Higuchi ghost and scalar instabilities are absent at all times.

  4. Diffusion pore imaging with generalized temporal gradient profiles

    CERN Document Server

    Laun, F B

    2012-01-01

    In porous material research, one main interest of nuclear magnetic resonance diffusion (NMR) experiments is the determination of the exact shape of pores. While it has been a longstanding question if this is in principle achievable, it has been shown recently that it is indeed possible to perform NMR-based diffusion pore imaging. In this work we present a generalization of these previous results. We show that the specific temporal gradient profiles that were used so far are not unique as almost arbitrary temporal diffusion gradient profiles may be used.

  5. Decadal Changes in the World's Coastal Latitudinal Temperature Gradients.

    Directory of Open Access Journals (Sweden)

    Hannes Baumann

    Full Text Available Most of the world's living marine resources inhabit coastal environments, where average thermal conditions change predictably with latitude. These coastal latitudinal temperature gradients (CLTG coincide with important ecological clines,e.g., in marine species diversity or adaptive genetic variations, but how tightly thermal and ecological gradients are linked remains unclear. A first step is to consistently characterize the world's CLTGs. We extracted coastal cells from a global 1°×1° dataset of weekly sea surface temperatures (SST, 1982-2012 to quantify spatial and temporal variability of the world's 11 major CLTGs. Gradient strength, i.e., the slope of the linear mean-SST/latitude relationship, varied 3-fold between the steepest (North-American Atlantic and Asian Pacific gradients: -0.91°C and -0.68°C lat(-1, respectively and weakest CLTGs (African Indian Ocean and the South- and North-American Pacific gradients: -0.28, -0.29, -0.32°C lat(-1, respectively. Analyzing CLTG strength by year revealed that seven gradients have weakened by 3-10% over the past three decades due to increased warming at high compared to low latitudes. Almost the entire South-American Pacific gradient (6-47°S, however, has considerably cooled over the study period (-0.3 to -1.7°C, 31 years, and the substantial weakening of the North-American Atlantic gradient (-10% was due to warming at high latitudes (42-60°N, +0.8 to +1.6°C,31 years and significant mid-latitude cooling (Florida to Cape Hatteras 26-35°N, -0.5 to -2.2°C, 31 years. Average SST trends rarely resulted from uniform shifts throughout the year; instead individual seasonal warming or cooling patterns elicited the observed changes in annual means. This is consistent with our finding of increased seasonality (i.e., summer-winter SST amplitude in three quarters of all coastal cells (331 of 433. Our study highlights the regionally variable footprint of global climate change, while emphasizing

  6. Latitudinal gradients in degradation of marine dissolved organic carbon

    DEFF Research Database (Denmark)

    Arnosti, Carol; Steen, Andrew; Ziervogel, Kai;

    2011-01-01

    climate increasingly affects the marine environment, changes in the spectrum of substrates accessible by microbial communities may lead to shifts in the location and rate at which marine DOC is respired. Since the inventory of DOC in the ocean is comparable in magnitude to the atmospheric CO2 reservoir...... molecular weight organic substrates and thereby initiate organic matter degradation. These data demonstrate the existence of a latitudinal gradient in the range of complex substrates available to heterotrophic microbial communities, paralleling the global gradient in bacterial species richness. As changing......, such a change could profoundly affect the global carbon cycle....

  7. Discontinuous Galerkin finite element methods for gradient plasticity.

    Energy Technology Data Exchange (ETDEWEB)

    Garikipati, Krishna. (University of Michigan, Ann Arbor, MI); Ostien, Jakob T.

    2010-10-01

    In this report we apply discontinuous Galerkin finite element methods to the equations of an incompatibility based formulation of gradient plasticity. The presentation is motivated with a brief overview of the description of dislocations within a crystal lattice. A tensor representing a measure of the incompatibility with the lattice is used in the formulation of a gradient plasticity model. This model is cast in a variational formulation, and discontinuous Galerkin machinery is employed to implement the formulation into a finite element code. Finally numerical examples of the model are shown.

  8. Measurement of deformation gradients in hot rolling of AA3004

    OpenAIRE

    C. Boldetti; Pinna, C.; Howard, I. C.; Gutierrez, G.

    2005-01-01

    In this paper we describe an experimental technique developed to measure the deformation gradients and temperature in a single hot rolling pass of an AA3004 sample that was fitted with an insert. The insert had been previously hand engraved with a 1 × 1 mm grid pitch, and the analysis of the data digitally captured from the image of the deformed grid enabled the calculation of the components of the deformation gradient tensor. Four steel pins prevented relative motion between the insert and ...

  9. Acoustic beam control in biomimetic projector via velocity gradient

    Science.gov (United States)

    Gao, Xiaowei; Zhang, Yu; Cao, Wenwu; Dong, Erqian; Song, Zhongchang; Li, Songhai; Tang, Liguo; Zhang, Sai

    2016-07-01

    A biomimetic projector (BioP) based on computerized tomography of pygmy sperm whale's biosonar system has been designed using gradient-index (GRIN) material. The directivity of this BioP device was investigated as function of frequency and the velocity gradient of the GRIN material. A strong beam control over a broad bandwidth at the subwavelength scale has been achieved. Compared with a bare subwavelength source, the main lobe pressure of the BioP is about five times as high and the angular resolution is one order of magnitude better. Our results indicate that this BioP has excellent application potential in miniaturized underwater sonars.

  10. Velocity bunching in travelling wave accelerator with low acceleration gradient

    CERN Document Server

    Huang, Rui-Xuan; Li, Wei-Wei; Jia, Qi-Ka

    2013-01-01

    We present the analytical and simulated results concerning the influences of the acceleration gradient in the velocity bunching process, which is a bunch compression scheme that uses a traveling wave accelerating structure as a compressor. Our study shows that the bunch compression application with low acceleration gradient is more tolerant to phase jitter and more successful to obtain compressed electron beam with symmetrical longitudinal distribution and low energy spread. We also present a transverse emittance compensation scheme to compensate the emittance growth caused by the increasing of the space charge force in the compressing process that is easy to be adjusted for different compressing factors.

  11. The Differential Virial Theorem with Gradient Formulas for the Operators

    CERN Document Server

    Finley, James P

    2016-01-01

    A gradient dependent formula is derived for the spinless one-particle density-matrix operator z from the differential virial theorem. A gradient dependent formula is also derived for a spinless one-particle density-matrix operator that can replace the two operators of the differential virial theorem that arise from the kinetic energy operator. Other operators are also derived that can replace the operators mentioned above in the differential virial theorem; these operators depend on the real part of spinless one-particle density-matrix.

  12. Composition Gradient Hard Coatings by Arc Ion Plating

    Institute of Scientific and Technical Information of China (English)

    CHENJun; LINGuo-qiang; WANGFu-gang

    2004-01-01

    Arc Ion Plating can be used to synthesize multi-component composition gradient hard coatings by adjusting arc currents of metal targets. The present work aims at a comprehensive description of such a technique. The examples of TiAl multi-layer alloy coatings and (Ti,M) N composition-gradient films were taken (M representing Zr, Nb etc.) for the purpose of explaining the working process and evaluating practical effects. The results show that this technique has the advantages of easy manipulation, rapid deposition, and wide composition range.

  13. Master equation simulation analysis of immunostained Bicoid morphogen gradient

    Directory of Open Access Journals (Sweden)

    Reinitz John

    2007-11-01

    Full Text Available Abstract Background The concentration gradient of Bicoid protein which determines the developmental pathways in early Drosophila embryo is the best characterized morphogen gradient at the molecular level. Because different developmental fates can be elicited by different concentrations of Bicoid, it is important to probe the limits of this specification by analyzing intrinsic fluctuations of the Bicoid gradient arising from small molecular number. Stochastic simulations can be applied to further the understanding of the dynamics of Bicoid morphogen gradient formation at the molecular number level, and determine the source of the nucleus-to-nucleus expression variation (noise observed in the Bicoid gradient. Results We compared quantitative observations of Bicoid levels in immunostained Drosophila embryos with a spatially extended Master Equation model which represents diffusion, decay, and anterior synthesis. We show that the intrinsic noise of an autonomous reaction-diffusion gradient is Poisson distributed. We demonstrate how experimental noise can be identified in the logarithm domain from single embryo analysis, and then separated from intrinsic noise in the normalized variance domain of an ensemble statistical analysis. We show how measurement sensitivity affects our observations, and how small amounts of rescaling noise can perturb the noise strength (Fano factor observed. We demonstrate that the biological noise level in data can serve as a physical constraint for restricting the model's parameter space, and for predicting the Bicoid molecular number and variation range. An estimate based on a low variance ensemble of embryos suggests that the steady-state Bicoid molecular number in a nucleus should be larger than 300 in the middle of the embryo, and hence the gradient should extend to the posterior end of the embryo, beyond the previously assumed background limit. We exhibit the predicted molecular number gradient together with

  14. Gyrokinetic particle simulation of ion temperature gradient drift instabilities

    Energy Technology Data Exchange (ETDEWEB)

    Lee, W.W.; Tang, W.M.

    1987-04-01

    Ion temperature gradient drift instabilities have been investigated using gyrokinetic particle simulation techniques for the purpose of identifying the mechanisms responsible for their nonlinear saturation as well as the associated anomalous transport. For simplicity, the simulation has been carried out in a shear-free slab geometry, where the background pressure gradient is held fixed in time to represent quasistatic profiles typical of tokamak discharges. It is found that the nonlinearly generated zero-frequency responses for the ion parallel momentum and pressure are the dominant mechanisms giving rise to saturation. This is supported by the excellent agreement between the simulation results and those obtained from mode coupling calculations.

  15. Matching bunched beams to alternating gradient focusing systems

    International Nuclear Information System (INIS)

    A numerical procedure for generating phase-space distributions matched to alternating gradient focusing systems has been tested. For a smooth-focusing system a matched distribution can be calculated. With a particle tracing simulation code such a distribution can be followed while adiabatically deforming the focusing forces until an alternating gradient configuration is reached. The distribution remains matched; the final distribution is periodic with the structure period. External nonlinearities, including nonlinear couplings, were included in our examples but space charge was not. This procedure is expected to work with space charge but will require a 3-D space-charge calculation in the simulation code

  16. Arm classification and velocity gradients in spiral galaxies

    Energy Technology Data Exchange (ETDEWEB)

    Biviano, A.; Girardi, M.; Giuricin, G.; Mardirossian, F.; Mezzetti, M. (Trieste Univ. (Italy) Scuola Internazionale Superiore di Studi Avanzati (Italy) Scuola Internazionale Superiore di Studi Avanzati, Trieste (Italy) Scuola Internazionale Superiore di Studi Avanzati (Italy) Centro Interuniversitario Regionale di Astrofisica e Cosmologia (Italy))

    1991-08-01

    On the basis of published rotation curves, velocity gradients are compiled for 94 galaxies. A significant correlation is found in this sample of galaxies between their gradients and arm classes (as given by Elmegreen and Elmegreen, 1982); galaxies with steeper curves tend to have a flocculent arm structure, and galaxies with flatter curves tend to have a grand design morphology. The correlation is true, since it is not induced by other correlations. The present result is in agreement with previous suggestions by Whitmore (1984) and with the recent result by Elmegreen and Elmegreen; it is also consistent with the predictions of density wave theory for the formation of the spiral structure. 89 refs.

  17. Report from KEK (High gradient study results from Nextef)

    CERN Document Server

    Higo, Toshiyasu

    2012-01-01

    Most up-to-date high gradient test of the CLIC prototype structures as of September 2011 is described in this report. The "T24" undamped structure showed fast processing time, still-decreasing breakdown rate and its breakdown rate was estimated to be as low as the CLIC requirement. The "TD24" damped structure showed not so excellent high gradient performance as undamped "T24" but the characteristics was much improved than the damped "TD18" structure with higher magnetic field. Further R&D is needed and we present some of the present efforts at KEK.

  18. Urban-to-Rural Environmental Gradients in Houston Metropolitan Area

    Science.gov (United States)

    Gramann, J.; Schade, G. W.; Barta, C.

    2011-12-01

    The Houston Metropolitan area composes an extensive urban heat island and is the largest emitter of atmospheric pollutants in Texas, affecting regional air quality far beyond its borders. Three self-powered weather stations that include carbon dioxide (CO2) and ozone (O3) analyzers were set up to evaluate urban to rural environmental gradients in support of an NSF project investigating isoprene emissions and corresponding oak tree physiology. One station was installed at a participating high school in downtown Houston, one at a junior high school in The Woodlands, a forested suburban community about 40 km from downtown, and the third near the ranger station in Sam Houston National Forest (SHNF) 90 km from downtown. As a consequence of the sea breeze and typical summer wind patterns, these locations are often in line with the Houston urban pollution plume, allowing us to observe the development of ozone concentrations as winds move ozone precursors emitted in Houston toward the north. Here, we analyze the urban to rural gradients for the 2011 ozone season, a period of extreme high temperatures and exceptional drought. Night time (0:00-5:00 LT) temperatures indicated a 2°C gradient between downtown and SHNF; however, this gradient was not mirrored in daytime (10:00-18:00LT) temperatures, which were instead strongly influenced by the sea breeze typically arriving at the downtown station around 13:45 local time (LT), and in The Woodlands around 15:00 LT. Vapor pressure values also showed a gradient between downtown and SHNF with Houston being the more humid, as would be expected with its closer proximity to the Gulf of Mexico. O3 tended to be lowest in downtown for all time periods: night, morning (10:00-13:00 LT), and afternoon (13:00-18:00 LT). The largest O3 gradient, 9 ppb, occurred between downtown Houston and the Woodlands during the afternoon. CO2 gradients were detected as well with lowest daytime values at SHNF, and highest night time values in The Woodlands

  19. A Multi-Scale Gradient Algorithm Based on Morphological Operators

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    Watershed transformation is a powerful morphological tool for image segmentation. However, the performance of the image segmentation methods based on watershed transformation depends largely on the algorithm for computing the gradient of the image to be segmented. In this paper, we present a multi-scale gradient algorithm based on morphological operators for watershed-based image segmentation, with effective handling of both step and blurred edges. We also present an algorithm to eliminate the local minima produced by noise and quantization errors. Experimental results indicate that watershed transformation with the algorithms proposed in this paper produces meaningful segmentations, even without a region-merging step.

  20. The Stellar Oxygen Abundance Gradient in M33

    Science.gov (United States)

    Monteverde, M. I.; Herrero, A.; Lennon, D. J.; Kudritzki, R.-P.

    1997-01-01

    We report here first results concerning stellar oxygen abundances in M33. Non-LTE model atmosphere and non-LTE line formation calculations were used to determine the oxygen abundance of B-type supergiants. By choosing stars located at different projected radial distances to the center of M33, we are able to determine the oxygen abundance gradient, for which we obtain a value of -0.16 +/- 0.06 dex kpc-1. This is the first time that the oxygen stellar abundance gradient has been determined in a spiral galaxy other than the Milky Way.