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  1. Chemical review and studies related to species from the genus Tynanthus (Bignoniaceae

    Directory of Open Access Journals (Sweden)

    Fernanda Colombi Cansian

    2015-09-01

    Full Text Available Species from the Bignoniaceae Family, including the genus Tynanthus, are very prevalent in the tropical Americas, with specimens found in a large part of the Brazilian territory. These plants are commonly used in traditional medicine for several purposes, and some studies have described their chemical structure, in addition to other reports related to some species from this genus. This review aimed to gather information from published works concerning species of the genus Tynanthus, as well as to detect flaws in research related to these plants, which may have great biological and pharmaceutical importance. Also, this review points out some common chemical characteristics of these species, providing information that may help new researchers to improve their knowledge about these plants.

  2. Species and diet related resistance to chemical carcinogens: biochemical mechanisms of aflatoxin B1 detoxification

    International Nuclear Information System (INIS)

    To provide insight into the biochemical mechanisms mediating species and diet related resistance to chemical carcinogens, the biotransformation and covalent binding to DNA of the potent hepatocarcinogen aflatoxin B1(AFB) was investigated in resistant and susceptible species fed standard and butylated hydroxyanisole (BHA)-supplemented diets. The rat is sensitive to the hepatocarcinogenic effects of AFB, whereas the mouse, and rats fed BHA-supplemented diet, are resistant. To differentiate between enzyme induction and direct antioxidant effects, BHA was administered to rats for 9 days, or as a single dose 4-7 hrs prior to i.p. injection of 3H-AFB. Long-term treatment with BHA doubled the biliary excretion of the glutathione conjugate of AFB and the AFP1-glucuronide, and reduced the binding of AFB to hepatic DNA to 16% of control. Single-dose BHA treatment had no effect. To determine if glutathione S-transferase (GST) activity towards the AFB-epoxide mediates both treatment and species related resistance to AFB carcinogenesis, a method was developed to measure the rate of formation of the AFB-epoxide, and the rate of inactivation of the epoxide via GST. To demonstrate the importance of GST-mediated detoxification of the AFB-epoxide in the mouse in vivo, depletion of hepatic GSH was accomplished by administration of L-buthionine-S,R-sulfoximine and diethyl maleate, prior to administration of AFB. GSH depletion was associated with a 30-fold increase in AFB-DNA binding

  3. Bioaccessibility of selenium after human ingestion in relation to its chemical species and compartmentalization in maize.

    Science.gov (United States)

    Mombo, Stéphane; Schreck, Eva; Dumat, Camille; Laplanche, Christophe; Pierart, Antoine; Longchamp, Mélanie; Besson, Philippe; Castrec-Rouelle, Maryse

    2016-06-01

    Selenium is a micronutrient needed by all living organisms including humans, but often present in low concentration in food with possible deficiency. From another side, at higher concentrations in soils as observed in seleniferous regions of the world, and in function of its chemical species, Se can also induce (eco)toxicity. Root Se uptake was therefore studied in function of its initial form for maize (Zea mays L.), a plant widely cultivated for human and animal food over the world. Se phytotoxicity and compartmentalization were studied in different aerial plant tissues. For the first time, Se oral human bioaccessibility after ingestion was assessed for the main Se species (Se(IV) and Se(VI)) with the BARGE ex vivo test in maize seeds (consumed by humans), and in stems and leaves consumed by animals. Corn seedlings were cultivated in hydroponic conditions supplemented with 1 mg L(-1) of selenium (Se(IV), Se(VI), Control) for 4 months. Biomass, Se concentration, and bioaccessibility were measured on harvested plants. A reduction in plant biomass was observed under Se treatments compared to control, suggesting its phytotoxicity. This plant biomass reduction was higher for selenite species than selenate, and seed was the main affected compartment compared to control. Selenium compartmentalization study showed that for selenate species, a preferential accumulation was observed in leaves, whereas selenite translocation was very limited toward maize aerial parts, except in the seeds where selenite concentrations are generally high. Selenium oral bioaccessibility after ingestion fluctuated from 49 to 89 % according to the considered plant tissue and Se species. Whatever the tissue, selenate appeared as the most human bioaccessible form. A potential Se toxicity was highlighted for people living in seleniferous regions, this risk being enhanced by the high Se bioaccessibility. PMID:26387097

  4. Biosynthesis, Chemical Structure, and Structure-Activity Relationship of Orfamide Lipopeptides Produced by Pseudomonas protegens and Related Species

    OpenAIRE

    Ma, Zongwang; Geudens, Niels; Kieu, Nam P.; Sinnaeve, Davy; Ongena, Marc; Martins, José C.; Höfte, Monica

    2016-01-01

    Orfamide type cyclic lipopeptides (CLPs) are biosurfactants produced by Pseudomonas and involved in lysis of oomycete zoospores, biocontrol of Rhizoctonia and insecticidal activity against aphids. In this study, we compared the biosynthesis, structural diversity, in vitro and in planta activities of orfamides produced by rhizosphere-derived Pseudomonas protegens and related Pseudornonas species. Genetic characterization together with chemical identification revealed that the main orfamide com...

  5. Evolution of 222 Rn and chemical species related with eruptive processes of the Popocatepetl volcano

    International Nuclear Information System (INIS)

    The study of the water quality for human consumption has always been great importance, considering the factors that can affect water quality as aquifers recharge and underground permeability. In this work, the behavior of three water springs related with the Popocatepetl volcano were studied within April 1997 and March 1998. The spring in Paso de Cortes in the municipality of Amecameca, State of Mexico, and the springs of Atlimeyaya and Axocopan in Atlixco, State of Puebla; the water of these last two springs is used for human consumption. The content of radon in water was determined by means of liquid scintillation, and a concentration of 1.22 Bq/l was found in the spring of Atlimeyaya, which represents 2 % of the maximum permissible level established by ICRP. A significant increase was observed in the Paso de Cortes spring in the month of July 1997. The content of radium, was determined by means of gamma spectrophotometry and small quantities of this element (2+ , Mg2+ , K+, Na+, H C O3- , Cl- , S O4-2 , Li, B, Sc, Ti, V, Rb, Sr and Ba, primarily, which did not show any significant variation with the change of seasons. No important variations in the concentration of radon, radium or for other volcanic activity related species were found in the entire study. (Author)

  6. Evolution of 222 Rn and chemical species related with eruptive processes of the Popocatepetl volcano

    International Nuclear Information System (INIS)

    The 222 Rn monitoring in the Popocatepetl volcano was initiated on 1993. At December 21, 1994 it is initiated an eruptive stage in the volcano with gas emission, ashes and the lava dome formation on the crater at middle 1996. During all this time it has been determined radon concentrations on soils with active and passive detectors. In this work the changes in radon contents are reported also the physicochemical parameters in spring water related with the volcanic building associated to the recent activity of the volcano. (Author)

  7. Analysis of genetics and chemical contents relation compared to commonly used Cissus quadrangularis L. and barcode markers of some Thailand Cissus species.

    Science.gov (United States)

    Sudmoon, Runglawan; Chaveerach, Arunrat; Tanee, Tawatchai

    2016-01-01

    Several Cissus species are commonly used as traditional and modified medicines, and their chemical constituents are major point for precise usage. However, C. quadrangularis is the only species for which the usages and the chemical composition have been reported. These data should be investigated for other species in the genus. Eight species namely C. assamica, C. carnosa, C. elongata, C. hastata, C. javana, C. pteroclada, C. quadrangular is and C. repens were evaluated for genetic relationships and chemical composition. Constructed dendrogram shows high-powered efficiency of inter-simple sequence repeat (ISSR) data used which can clearly identify different and identical species. Genetic similarity (S) value of the identical species is 0.86, whereas for different species the value can vary from 0.53 to 0.75. Four highly related species (S=0.64-0.72), C. assamica, C. carnosa, C. hastata and C. repens were selected to undergo chemical study by gas chromatography-mass spectrometry (GC-MS) on the methanol crude extract. Only one compound, β-sitosterol, found in the four species is identical to the compound reported from C. quadrangular is, where there were five identical chemicals found in the selected species. Species-specific barcode with rbcL region was constructed. Nucleotide variation was evaluated indicating genetic distance value of 0.025 to 0.072. PMID:26826840

  8. Biosynthesis, Chemical Structure, and Structure-Activity Relationship of Orfamide Lipopeptides Produced by Pseudomonas protegens and Related Species.

    Science.gov (United States)

    Ma, Zongwang; Geudens, Niels; Kieu, Nam P; Sinnaeve, Davy; Ongena, Marc; Martins, José C; Höfte, Monica

    2016-01-01

    Orfamide-type cyclic lipopeptides (CLPs) are biosurfactants produced by Pseudomonas and involved in lysis of oomycete zoospores, biocontrol of Rhizoctonia and insecticidal activity against aphids. In this study, we compared the biosynthesis, structural diversity, in vitro and in planta activities of orfamides produced by rhizosphere-derived Pseudomonas protegens and related Pseudomonas species. Genetic characterization together with chemical identification revealed that the main orfamide compound produced by the P. protegens group is orfamide A, while the related strains Pseudomonas sp. CMR5c and CMR12a produce orfamide B. Comparison of orfamide fingerprints led to the discovery of two new orfamide homologs (orfamide F and orfamide G) in Pseudomonas sp. CMR5c. The structures of these two CLPs were determined by nuclear magnetic resonance (NMR) and mass spectrometry (MS) analysis. Mutagenesis and complementation showed that orfamides determine the swarming motility of parental Pseudomonas sp. strain CMR5c and their production was regulated by luxR type regulators. Orfamide A and orfamide B differ only in the identity of a single amino acid, while orfamide B and orfamide G share the same amino acid sequence but differ in length of the fatty acid part. The biological activities of orfamide A, orfamide B, and orfamide G were compared in further bioassays. The three compounds were equally active against Magnaporthe oryzae on rice, against Rhizoctonia solani AG 4-HGI in in vitro assays, and caused zoospore lysis of Phytophthora and Pythium. Furthermore, we could show that orfamides decrease blast severity in rice plants by blocking appressorium formation in M. oryzae. Taken all together, our study shows that orfamides produced by P. protegens and related species have potential in biological control of a broad spectrum of fungal plant pathogens. PMID:27065956

  9. Biosynthesis, chemical structure and structure-activity relationship of orfamide lipopeptides produced by Pseudomonas protegens and related species

    Directory of Open Access Journals (Sweden)

    Zongwang eMa

    2016-03-01

    Full Text Available Orfamide-type cyclic lipopeptides (CLPs are biosurfactants produced by Pseudomonas and involved in lysis of oomycete zoospores, biocontrol of Rhizoctonia and insecticidal activity against aphids. In this study we compared the biosynthesis, structural diversity, in vitro and in planta activities of orfamides produced by rhizosphere-derived Pseudomonas protegens and related Pseudomonas species. Genetic characterization together with chemical identification revealed that the main orfamide compound produced by the P. protegens group is orfamide A, while the related strains Pseudomonas sp. CMR5c and CMR12a produce orfamide B. Comparison of orfamide fingerprints led to the discovery of two new orfamide homologues (orfamide F and orfamide G in Pseudomonas sp. CMR5c. The structures of these two CLPs were determined by nuclear magnetic resonance (NMR and mass spectrometry (MS analysis. Mutagenesis and complementation showed that orfamides determine the swarming motility of parental Pseudomonas sp. strain CMR5c and their production was regulated by luxR type regulators. Orfamide A and orfamide B differ only in the identity of a single amino acid, while orfamide B and orfamide G share the same amino acid sequence but differ in length of the fatty acid part. The biological activities of orfamide A, orfamide B and orfamide G were compared in further bioassays. The three compounds were equally active against Magnaporthe oryzae on rice, against Rhizoctonia solani AG 4-HGI in in vitro assays, and caused zoospore lysis of Phytophthora and Pythium. Furthermore we could show that orfamides decrease blast severity in rice plants by blocking appressorium formation in M. oryzae. Taken all together, our study shows that orfamides produced by P. protegens and related species have potential in biological control of a broad spectrum of fungal plant pathogens.

  10. Biosynthesis, Chemical Structure, and Structure-Activity Relationship of Orfamide Lipopeptides Produced by Pseudomonas protegens and Related Species

    Science.gov (United States)

    Ma, Zongwang; Geudens, Niels; Kieu, Nam P.; Sinnaeve, Davy; Ongena, Marc; Martins, José C.; Höfte, Monica

    2016-01-01

    Orfamide-type cyclic lipopeptides (CLPs) are biosurfactants produced by Pseudomonas and involved in lysis of oomycete zoospores, biocontrol of Rhizoctonia and insecticidal activity against aphids. In this study, we compared the biosynthesis, structural diversity, in vitro and in planta activities of orfamides produced by rhizosphere-derived Pseudomonas protegens and related Pseudomonas species. Genetic characterization together with chemical identification revealed that the main orfamide compound produced by the P. protegens group is orfamide A, while the related strains Pseudomonas sp. CMR5c and CMR12a produce orfamide B. Comparison of orfamide fingerprints led to the discovery of two new orfamide homologs (orfamide F and orfamide G) in Pseudomonas sp. CMR5c. The structures of these two CLPs were determined by nuclear magnetic resonance (NMR) and mass spectrometry (MS) analysis. Mutagenesis and complementation showed that orfamides determine the swarming motility of parental Pseudomonas sp. strain CMR5c and their production was regulated by luxR type regulators. Orfamide A and orfamide B differ only in the identity of a single amino acid, while orfamide B and orfamide G share the same amino acid sequence but differ in length of the fatty acid part. The biological activities of orfamide A, orfamide B, and orfamide G were compared in further bioassays. The three compounds were equally active against Magnaporthe oryzae on rice, against Rhizoctonia solani AG 4-HGI in in vitro assays, and caused zoospore lysis of Phytophthora and Pythium. Furthermore, we could show that orfamides decrease blast severity in rice plants by blocking appressorium formation in M. oryzae. Taken all together, our study shows that orfamides produced by P. protegens and related species have potential in biological control of a broad spectrum of fungal plant pathogens. PMID:27065956

  11. The major differences in chemical composition and antibacterial activity of two closely related Leonotis species (Lamiaceae may have taxonomic value

    Directory of Open Access Journals (Sweden)

    J.N. Eloff

    2010-01-01

    Full Text Available Several Leonotis species are used widely for medicinal purposes in Africa. There have been drastic changes in the taxonomic treatment of Leonotis species during the past decade. Two species, L. dysophylla and L. microphylla occurring in Pretoria have been considered as varieties of the same species and as different species by different authors. Because Leonotis species are used widely as medicinal plants inter alia against bacterial infections, we decided to compare the chemical composition and antibacterial activity of four plants from each of two populations of the species. The chemical composition of acetone extracts of finely ground leaves was determined by thin layer chromatography followed by spraying with vanillin-sulphuric acid. There were hardly any differences between plants from the same population. There were major differences between the two species in the composition of pigments separated by thin layer chromatography and for compounds visualized with the vanillin-sulphuric acid spray reagent. This supported the viewpoint that the two species should not be considered as varieties. The major differences found in chemical composition indicate that chemical parameters may play an important role in resolving taxonomic differences. Because such a small quantity of material is needed, it may be feasible to analyze one or two leaves obtained from herbarium sheets as an additional taxonomic parameter. The antibacterial activity of the acetone extracts was determined using a two-fold serial dilution microplate method with tetrazolium violet as indicator of growth. The specific strains of the four most important nosocomial bacterial pathogens suggested by the United States National Committee for Clinical Laboratory Standards were used: Staphylococcus aureus (American Type Culture Collection 29213, Pseudomonas aeruginosa (ATCC 27853, Escherichia coli (ATCC 25922 and Enterococcus faecalis (ATCC 21212. The minimum inhibitory activity of the

  12. How to link the relative abundances of gas species in coma of comets to their initial chemical composition ?

    CERN Document Server

    Marboeuf, Ulysse

    2014-01-01

    The chemical composition of comets is frequently assumed to be directly provided by the observations of the abundances of volatile molecules in the coma. The present work aims to determine the relationship between the chemical composition of the coma, the outgassing profile of volatile molecules and the internal chemical composition, and water ice structure of the nucleus, and physical assumptions on comets. To do this, we have developed a quasi 3D model of a cometary nucleus which takes into account all phase changes and water ice structures (amorphous, crystalline, clathrate, and a mixture of them); we have applied this model to the comet 67P/Churyumov-Gerasimenko, the target of the Rosetta mission. We find that the outgassing profile of volatile molecules is a strong indicator of the physical and thermal properties (water ice structure, thermal inertia, abundances, distribution, physical differentiation) of the solid nucleus. Day/night variations of the rate of production of species helps to distinguish th...

  13. Chemical Diversity Investigation of Hepatotoxic Pyrrolizidine Alkaloids in Qianliguang (Senecio scandens) and Related Species by UHPLC-QTOF-MS1

    Institute of Scientific and Technical Information of China (English)

    Lin Zhua; Na Li; Jian-Qing Ruan; Peter P. Fu; Zhong-Zhen Zhao; Ge Lina

    2015-01-01

    Objective: Qianliguang (Senecio scandens) is a common Chinese medicinal herb. Qianliguang-containing herbal proprietary products are registered as over-the-counter remedies in China and exported to Western countries. The presence of hepatotoxic pyrrolizidine alkaloids (PAs) has raised concerns about the safety of using Qianliguang and its products. The present study aims at investigation of different types of PAs present in Qianliguang collected from representative locations in China. Methods: In this study, a simple but specific UHPLC-QTOF-MS method for the determination of toxic PAs was developed, based on the characteristic fragment ions specific to different types of PAs. It was successfully applied for the identification and distinguishing of PAs present in Qianliguang and related Senecio species growing in different locations of China. Results: Significant diversity of the PA types and quantities were revealed among the samples tested. The estimated total amounts of toxic PAs in three of the samples exceed the toxic limits of PA intake restricted by WHO, demonstrating the timely and highly demand for regulating both types and quantities of PAs present in Qianliguang. Conclusions: This study provides the methodology for simultaneous identification and quantification of PAs present in herbs without requiring corresponding standards, which could be further used for more systematic investigations of the PA distribution in Qianliguang and other PA-containing herbs.

  14. Recombination rate variation in closely related species

    OpenAIRE

    Smukowski, C S; Noor, M A F

    2011-01-01

    Despite their importance to successful meiosis and various evolutionary processes, meiotic recombination rates sometimes vary within species or between closely related species. For example, humans and chimpanzees share virtually no recombination hotspot locations in the surveyed portion of the genomes. However, conservation of recombination rates between closely related species has also been documented, raising an apparent contradiction. Here, we evaluate how and why conflicting patterns of r...

  15. TransCom model simulations of CH4 and related species: linking transport, surface flux and chemical loss with CH4 variability in the troposphere and lower stratosphere

    Directory of Open Access Journals (Sweden)

    R. G. Prinn

    2011-07-01

    Full Text Available A transport model intercomparison experiment (TransCom-CH4 has been designed to investigate the roles of surface emissions, transport and chemical loss in simulating the global methane distribution. Model simulations were conducted using twelve models and four model variants and results were archived for the period of 1990–2007. The transport and removal of six CH4 tracers with different emission scenarios were simulated, with net global emissions of 513 ± 9 and 514 ± 14 Tg CH4 yr−1 for the 1990s and 2000s, respectively. Additionally, sulfur hexafluoride (SF6 was simulated to check the interhemispheric transport, radon (222Rn to check the subgrid scale transport, and methyl chloroform (CH3CCl3 to check the chemical removal by the tropospheric hydroxyl radical (OH. The results are compared to monthly or annual mean time series of CH4, SF6 and CH3CCl3 measurements from 8 selected background sites, and to satellite observations of CH4 in the upper troposphere and stratosphere. Most models adequately capture the vertical gradients in the stratosphere, the average long-term trends, seasonal cycles, interannual variations and interhemispheric gradients at the surface sites for SF6, CH3CCl3 and CH4. The vertical gradients of all tracers between the surface and the upper troposphere are consistent within the models, revealing vertical transport differences between models. We find that the interhemispheric exchange rate (1.39 ± 0.18 yr derived from SF6 is faster by about 11 % in the 2000s compared to the 1990s. Up to 60 % of the interannual variations in the forward CH4 simulations can be explained by accounting for the interannual variations in emissions from biomass burning and wetlands. We also show that the decadal average growth rate likely reached equilibrium in the early 2000s due to the flattening of anthropogenic emission growth since the late 1990s. The modeled CH4 budget is shown to depend strongly on the troposphere

  16. Taxonomy of Penicillium citrinum and related species

    DEFF Research Database (Denmark)

    Houbraken, J.A.M.P.; Frisvad, Jens Christian; Samson, A.F.

    2010-01-01

    Penicillium citrinum and related species have been examined using a combination of partial beta-tubulin, calmodulin and ITS sequence data, extrolite patterns and phenotypic characters. It is concluded that seven species belong to the series Citrina. Penicillium sizovae and Penicillium steckii are...

  17. Model reduction for stochastic chemical systems with abundant species

    Science.gov (United States)

    Smith, Stephen; Cianci, Claudia; Grima, Ramon

    2015-12-01

    Biochemical processes typically involve many chemical species, some in abundance and some in low molecule numbers. We first identify the rate constant limits under which the concentrations of a given set of species will tend to infinity (the abundant species) while the concentrations of all other species remains constant (the non-abundant species). Subsequently, we prove that, in this limit, the fluctuations in the molecule numbers of non-abundant species are accurately described by a hybrid stochastic description consisting of a chemical master equation coupled to deterministic rate equations. This is a reduced description when compared to the conventional chemical master equation which describes the fluctuations in both abundant and non-abundant species. We show that the reduced master equation can be solved exactly for a number of biochemical networks involving gene expression and enzyme catalysis, whose conventional chemical master equation description is analytically impenetrable. We use the linear noise approximation to obtain approximate expressions for the difference between the variance of fluctuations in the non-abundant species as predicted by the hybrid approach and by the conventional chemical master equation. Furthermore, we show that surprisingly, irrespective of any separation in the mean molecule numbers of various species, the conventional and hybrid master equations exactly agree for a class of chemical systems.

  18. Model reduction for stochastic chemical systems with abundant species

    Energy Technology Data Exchange (ETDEWEB)

    Smith, Stephen; Cianci, Claudia; Grima, Ramon [School of Biological Sciences, University of Edinburgh, Mayfield Road, Edinburgh EH93JR, Scotland (United Kingdom)

    2015-12-07

    Biochemical processes typically involve many chemical species, some in abundance and some in low molecule numbers. We first identify the rate constant limits under which the concentrations of a given set of species will tend to infinity (the abundant species) while the concentrations of all other species remains constant (the non-abundant species). Subsequently, we prove that, in this limit, the fluctuations in the molecule numbers of non-abundant species are accurately described by a hybrid stochastic description consisting of a chemical master equation coupled to deterministic rate equations. This is a reduced description when compared to the conventional chemical master equation which describes the fluctuations in both abundant and non-abundant species. We show that the reduced master equation can be solved exactly for a number of biochemical networks involving gene expression and enzyme catalysis, whose conventional chemical master equation description is analytically impenetrable. We use the linear noise approximation to obtain approximate expressions for the difference between the variance of fluctuations in the non-abundant species as predicted by the hybrid approach and by the conventional chemical master equation. Furthermore, we show that surprisingly, irrespective of any separation in the mean molecule numbers of various species, the conventional and hybrid master equations exactly agree for a class of chemical systems.

  19. Chemical species of plutonium in Hanford radioactive tank waste

    Energy Technology Data Exchange (ETDEWEB)

    Barney, G.S.

    1997-10-22

    Large quantities of radioactive wastes have been generated at the Hanford Site over its operating life. The wastes with the highest activities are stored underground in 177 large (mostly one million gallon volume) concrete tanks with steel liners. The wastes contain processing chemicals, cladding chemicals, fission products, and actinides that were neutralized to a basic pH before addition to the tanks to prevent corrosion of the steel liners. Because the mission of the Hanford Site was to provide plutonium for defense purposes, the amount of plutonium lost to the wastes was relatively small. The best estimate of the amount of plutonium lost to all the waste tanks is about 500 kg. Given uncertainties in the measurements, some estimates are as high as 1,000 kg (Roetman et al. 1994). The wastes generally consist of (1) a sludge layer generated by precipitation of dissolved metals from aqueous wastes solutions during neutralization with sodium hydroxide, (2) a salt cake layer formed by crystallization of salts after evaporation of the supernate solution, and (3) an aqueous supernate solution that exists as a separate layer or as liquid contained in cavities between sludge or salt cake particles. The identity of chemical species of plutonium in these wastes will allow a better understanding of the behavior of the plutonium during storage in tanks, retrieval of the wastes, and processing of the wastes. Plutonium chemistry in the wastes is important to criticality and environmental concerns, and in processing the wastes for final disposal. Plutonium has been found to exist mainly in the sludge layers of the tanks along with other precipitated metal hydrous oxides. This is expected due to its low solubility in basic aqueous solutions. Tank supernate solutions do not contain high concentrations of plutonium even though some tanks contain high concentrations of complexing agents. The solutions also contain significant concentrations of hydroxide which competes with other

  20. Chemical species of plutonium in Hanford radioactive tank waste

    International Nuclear Information System (INIS)

    Large quantities of radioactive wastes have been generated at the Hanford Site over its operating life. The wastes with the highest activities are stored underground in 177 large (mostly one million gallon volume) concrete tanks with steel liners. The wastes contain processing chemicals, cladding chemicals, fission products, and actinides that were neutralized to a basic pH before addition to the tanks to prevent corrosion of the steel liners. Because the mission of the Hanford Site was to provide plutonium for defense purposes, the amount of plutonium lost to the wastes was relatively small. The best estimate of the amount of plutonium lost to all the waste tanks is about 500 kg. Given uncertainties in the measurements, some estimates are as high as 1,000 kg (Roetman et al. 1994). The wastes generally consist of (1) a sludge layer generated by precipitation of dissolved metals from aqueous wastes solutions during neutralization with sodium hydroxide, (2) a salt cake layer formed by crystallization of salts after evaporation of the supernate solution, and (3) an aqueous supernate solution that exists as a separate layer or as liquid contained in cavities between sludge or salt cake particles. The identity of chemical species of plutonium in these wastes will allow a better understanding of the behavior of the plutonium during storage in tanks, retrieval of the wastes, and processing of the wastes. Plutonium chemistry in the wastes is important to criticality and environmental concerns, and in processing the wastes for final disposal. Plutonium has been found to exist mainly in the sludge layers of the tanks along with other precipitated metal hydrous oxides. This is expected due to its low solubility in basic aqueous solutions. Tank supernate solutions do not contain high concentrations of plutonium even though some tanks contain high concentrations of complexing agents. The solutions also contain significant concentrations of hydroxide which competes with other

  1. Evolution of {sup 222} Rn and chemical species related with eruptive processes of the Popocatepetl volcano; Evolucion de {sup 222} Rn y especies quimicas relacionadas con procesos eruptivos del volcan Popocatepetl

    Energy Technology Data Exchange (ETDEWEB)

    Aranda Z, P

    1998-10-01

    The study of the water quality for human consumption has always been great importance, considering the factors that can affect water quality as aquifers recharge and underground permeability. In this work, the behavior of three water springs related with the Popocatepetl volcano were studied within April 1997 and March 1998. The spring in Paso de Cortes in the municipality of Amecameca, State of Mexico, and the springs of Atlimeyaya and Axocopan in Atlixco, State of Puebla; the water of these last two springs is used for human consumption. The content of radon in water was determined by means of liquid scintillation, and a concentration of 1.22 Bq/l was found in the spring of Atlimeyaya, which represents 2 % of the maximum permissible level established by ICRP. A significant increase was observed in the Paso de Cortes spring in the month of July 1997. The content of radium, was determined by means of gamma spectrophotometry and small quantities of this element (<0.11 Bq/l) were found. Water chemical analysis also included usual physical-chemical parameters determination by means of conventional methods. The spring of Axocopan, was found to have the major level of minerals, followed by Atlimeyaya and finally the Paso de Cortes spring, which is supplied by recent infiltrated water. Fluoride level showed a peak high level in concentration during the months of October and November, time in which infiltration due to rain is low; concentration level found was above the maximum permissible level established by Mexican authorities for this compound. The other chemical species determined were: Ca{sup 2+} , Mg{sup 2+} , K{sup +}, Na{sup +}, H C O{sub 3} {sup -} , Cl{sup -} , S O{sub 4} {sup -} {sup 2} , Li, B, Sc, Ti, V, Rb, Sr and Ba, primarily, which did not show any significant variation with the change of seasons. No important variations in the concentration of radon, radium or for other volcanic activity related species were found in the entire study. (Author)

  2. Chemical composition of various Ephedra species

    OpenAIRE

    Saida Ibragic; Emin Sofic

    2015-01-01

    The medicinal significance of Ephedra is based on the sympathomimetic properties of ephedrine (E) alkaloids. Pharmacological effects depend on the phytocomposition of individual Ephedra species. The aim of this study was to measure the total alkaloids content (TAC), total phenolics content (TPC), and total flavonoids content (TFC) and determine their relationship in dry herb of Ephedra major, Ephedra distachya subsp. helvetica, Ephedra monosperma, Ephedra fragilis, Ephedra foeminea, Ephedra a...

  3. Chemical composition of various Ephedra species.

    Science.gov (United States)

    Ibragic, Saida; Sofić, Emin

    2015-01-01

    The medicinal significance of Ephedra is based on the sympathomimetic properties of ephedrine (E) alkaloids. Pharmacological effects depend on the phytocomposition of individual Ephedra species. The aim of this study was to measure the total alkaloids content (TAC), total phenolics content (TPC), and total flavonoids content (TFC) and determine their relationship in dry herb of Ephedra major, Ephedra distachya subsp. helvetica, Ephedra monosperma, Ephedra fragilis, Ephedra foeminea, Ephedra alata, Ephedra altissima and Ephedra foliata. Nowadays, medicinal use of Ephedrae herba is limited, but the abuse of its psychostimulants is rising. In this study, TAC, TPC and TFC were determined using spectrophotometric methods. For the first time, ultra-performance liquid chromatography with ultraviolet detection (UPLC-UV) was used for separation and quantification of E-type alkaloids of various Ephedra species. The highest TPC and TFC were found in E. alata (53.3 ± 0.1 mg Gallic acid equivalents/g dry weight, 2.8 mg quercetin equivalents/g dry weight, respectively). The total content of E and pseudoephedrine determined by UPLC-UV varied between 20.8 mg/g dry weight (E. distachya subsp. helvetica) and 34.7 mg/g dry weight (E. monosperma). The variable content and ratio between secondary metabolites determined in different Ephedra species reflects their metabolic activities. Utilization of UPLC-UV unveiled that this technique is sensitive, selective, and useful for separation and quantification of different alkaloids in complex biological matrixes. The limit of detection was 5 ng. Application of UPLC-UV can be recommended in quick analyses of E-type alkaloids in forensic medicine and quality control of pharmaceutical preparations. PMID:26295290

  4. Chemical composition of various Ephedra species

    Directory of Open Access Journals (Sweden)

    Saida Ibragic

    2015-07-01

    Full Text Available The medicinal significance of Ephedra is based on the sympathomimetic properties of ephedrine (E alkaloids. Pharmacological effects depend on the phytocomposition of individual Ephedra species. The aim of this study was to measure the total alkaloids content (TAC, total phenolics content (TPC, and total flavonoids content (TFC and determine their relationship in dry herb of Ephedra major, Ephedra distachya subsp. helvetica, Ephedra monosperma, Ephedra fragilis, Ephedra foeminea, Ephedra alata, Ephedra altissima and Ephedra foliata. Nowadays, medicinal use of Ephedrae herba is limited, but the abuse of its psychostimulants is rising. In this study, TAC, TPC and TFC were determined using spectrophotometric methods. For the first time, ultra-performance liquid chromatography with ultraviolet detection (UPLC-UV was used for separation and quantification of E-type alkaloids of various Ephedra species. The highest TPC and TFC were found in E. alata (53.3 ± 0.1 mg Gallic acid equivalents/g dry weight, 2.8 mg quercetin equivalents/g dry weight, respectively. The total content of E and pseudoephedrine determined by UPLC-UV varied between 20.8 mg/g dry weight (E. distachya subsp. helvetica and 34.7 mg/g dry weight (E. monosperma. The variable content and ratio between secondary metabolites determined in different Ephedra species reflects their metabolic activities. Utilization of UPLC-UV unveiled that this technique is sensitive, selective, and useful for separation and quantification of different alkaloids in complex biological matrixes. The limit of detection was 5 ng. Application of UPLC-UV can be recommended in quick analyses of E-type alkaloids in forensic medicine and quality control of pharmaceutical preparations. 

  5. Morphological and Chemical Characterization of Psidium Species

    Directory of Open Access Journals (Sweden)

    Anshu SHARMA

    2010-06-01

    Full Text Available The present study was conducted to estimate genetic relationship among 20 genotypes of Psidium guajava and two species viz., P friedrichsthalianum Ndz. and P. catleianum Sabine, by morphological characterization. Out of 16 morphological characters studied, only inflorescence type did not show any variation, while the remaining traits showed variability to considerable extent. Morphological data on different genotypes were used to calculate similarity matrix which ranged from 0.06 to 0.50.and based on this cluster analysis was done using UPGMA. The genetic variation among genotypes was high enough to divide them into two major clusters. Cluster I consisted of �Chakaiya Rehmannagar�, �Gutaniwala�, �Super Max Ruby�, and �Spear Acid�, whereas cluster II consisted of the rest of 18 genotypes.

  6. Chemical composition and machinability of selected species from Mozambique

    OpenAIRE

    Lhate, Inacio Arnaldo

    2011-01-01

    The objectives of the current work were to carry out a survey on timber sector in Mozambique and to determine chemical, calorific and machinability features of selected species. Mozambican timber sector was described as dominated by selective harvesting practices on a few hardwood species out of 118 species growing in the forest with potential for industrial timber. Selective logging is believed to be due to the demand in both domestic and international markets of traditionally used, and lack...

  7. Chemical Characteristics of Six Woody Species for Alley Cropping

    Directory of Open Access Journals (Sweden)

    Mosango, M.

    1999-01-01

    Full Text Available Leaves of six woody species (Leguminosae for alley cropping have been chemically analysed in order to evaluate their potentiality in the restoration of soil fertility. These species are : Acacia mangium, Cajanus cajan, Flemingia grahamiana, F. macrophylla, Leucaena leucocephala and Sesbania sesban. Nitrogen, carbon, cellulose, hemicellulose, lignin, active fraction and ash contents were determined as well as C/N and L/N ratios. AH these species appear to be rich in N and C. Fiber contents (cellulose, hemicellulose and lignin are globally low but variable from one species to another. C/N and L/N ratios are globally low. Among these species, Leucaena leucocephala and Senna spectabilis show the lowest C/N and LIN ratios. Such low values of C/N and L/N are normally found in species with rapid decomposition of organic matter.

  8. Quantification of the removal of chemical species by snow

    Energy Technology Data Exchange (ETDEWEB)

    Schwikowski, M.; Baltensperger, U.; Bruetsch, S.; Keil, R.; Gaeggeler, H.W. [Paul Scherrer Inst. (PSI), Villigen (Switzerland); Poulida, O. [Frederick Research Center, Nicosia (Cyprus)

    1997-09-01

    In order to quantify the scavenging of chemical species in mixed phase clouds, in-cloud field experiments were conducted in October and November 1993 at the high-alpine research station Jungfraujoch. On the average, air to snow transfer fractions were rather low with the highest value of 0.5 for nitrate, thus, most of the air borne chemical mass remained in the air parcel after precipitation. (author) 1 fig., 4 refs.

  9. Wood chemical composition in species of Cactaceae: the relationship between lignification and stem morphology.

    Science.gov (United States)

    Reyes-Rivera, Jorge; Canché-Escamilla, Gonzalo; Soto-Hernández, Marcos; Terrazas, Teresa

    2015-01-01

    In Cactaceae, wood anatomy is related to stem morphology in terms of the conferred support. In species of cacti with dimorphic wood, a unique process occurs in which the cambium stops producing wide-band tracheids (WBTs) and produces fibers; this is associated with the aging of individuals and increases in size. Stem support and lignification have only been studied in fibrous tree-like species, and studies in species with WBTs or dimorphic wood are lacking. In this study, we approach this process with a chemical focus, emphasizing the role of wood lignification. We hypothesized that the degree of wood lignification in Cactaceae increases with height of the species and that its chemical composition varies with wood anatomy. To test this, we studied the chemical composition (cellulose, hemicellulose, and lignin content) in 13 species (2 WBTs wood, 3 dimorphic, and 8 fibrous) with contrasting growth forms. We also analyzed lignification in dimorphic and fibrous species to determine the chemical features of WBTs and fibers and their relationship with stem support. The lignin contents were characterized by Fourier transform infrared spectroscopy and high performance liquid chromatography. We found that 11 species have a higher percentage (>35%) of lignin in their wood than other angiosperms or gymnosperms. The lignin chemical composition in fibrous species is similar to that of other dicots, but it is markedly heterogeneous in non-fibrous species where WBTs are abundant. The lignification in WBTs is associated with the resistance to high water pressure within cells rather than the contribution to mechanical support. Dimorphic wood species are usually richer in syringyl lignin, and tree-like species with lignified rays have more guaiacyl lignin. The results suggest that wood anatomy and lignin distribution play an important role in the chemical composition of wood, and further research is needed at the cellular level. PMID:25880223

  10. Wood chemical composition in species of Cactaceae: the relationship between lignification and stem morphology.

    Directory of Open Access Journals (Sweden)

    Jorge Reyes-Rivera

    Full Text Available In Cactaceae, wood anatomy is related to stem morphology in terms of the conferred support. In species of cacti with dimorphic wood, a unique process occurs in which the cambium stops producing wide-band tracheids (WBTs and produces fibers; this is associated with the aging of individuals and increases in size. Stem support and lignification have only been studied in fibrous tree-like species, and studies in species with WBTs or dimorphic wood are lacking. In this study, we approach this process with a chemical focus, emphasizing the role of wood lignification. We hypothesized that the degree of wood lignification in Cactaceae increases with height of the species and that its chemical composition varies with wood anatomy. To test this, we studied the chemical composition (cellulose, hemicellulose, and lignin content in 13 species (2 WBTs wood, 3 dimorphic, and 8 fibrous with contrasting growth forms. We also analyzed lignification in dimorphic and fibrous species to determine the chemical features of WBTs and fibers and their relationship with stem support. The lignin contents were characterized by Fourier transform infrared spectroscopy and high performance liquid chromatography. We found that 11 species have a higher percentage (>35% of lignin in their wood than other angiosperms or gymnosperms. The lignin chemical composition in fibrous species is similar to that of other dicots, but it is markedly heterogeneous in non-fibrous species where WBTs are abundant. The lignification in WBTs is associated with the resistance to high water pressure within cells rather than the contribution to mechanical support. Dimorphic wood species are usually richer in syringyl lignin, and tree-like species with lignified rays have more guaiacyl lignin. The results suggest that wood anatomy and lignin distribution play an important role in the chemical composition of wood, and further research is needed at the cellular level.

  11. Acute toxicity of eight oil spill response chemicals to temperate, boreal, and Arctic species.

    Science.gov (United States)

    Hansen, Bjørn Henrik; Altin, Dag; Bonaunet, Kristin; Overjordet, Ida Beathe

    2014-01-01

    The objectives of this study were to (1) determine the acute toxicity of selected shoreline washing agents (SWA) and dispersants, and (2) assess interspecies differences in sensitivity to the products. Eight shoreline washing agents (Hela saneringsvæske, Bios, Bioversal, Absorrep K212, and Corexit 9580) and chemical dispersants (Corexit 9500, Dasic NS, and Gamlen OD4000) were tested on five marine species, algae Skeletonema costatum, planktonic copepod species Acartia tonsa (temperate species), Calanus finmarchicus (boreal species) and Calanus glacialis (Arctic species), and benthic amphipod Corophium volutator. For most products, A. tonsa was the most sensitive species, whereas C. volutator was the least sensitive; however, these species were exposed through different media (water/sediment). In general, all copepod species displayed a relatively similar sensitivity to all products. However, A. tonsa was somewhat more sensitive than other copepods to most of the tested products. Thus, A. tonsa appears to be a candidate species for boreal and Arctic copepods for acute toxicity testing, and data generated on this species may be used as to provide conservative estimates. The benthic species (C. volutator) had a different sensitivity pattern relative to pelagic species, displaying higher sensitivity to solvent-based SWA than to water-based SWA. Comparing product toxicity, the dispersants were in general most toxic while the solvent-based SWA were least toxic to pelagic species. PMID:24754387

  12. The Use of Chemical-Chemical Interaction and Chemical Structure to Identify New Candidate Chemicals Related to Lung Cancer

    OpenAIRE

    Chen, Lei; Yang, Jing; Zheng, Mingyue; Kong, Xiangyin; Huang, Tao; Cai, Yu-Dong

    2015-01-01

    Lung cancer causes over one million deaths every year worldwide. However, prevention and treatment methods for this serious disease are limited. The identification of new chemicals related to lung cancer may aid in disease prevention and the design of more effective treatments. This study employed a weighted network, constructed using chemical-chemical interaction information, to identify new chemicals related to two types of lung cancer: non-small lung cancer and small-cell lung cancer. Then...

  13. High-Temperature Cooper pairing Between Different Chemical Species

    CERN Document Server

    Mackie, M; Piilo, J; Suominen, K A; Javanainen, J; Mackie, Matt; Dannenberg, Olavi; Piilo, Jyrki; Suominen, Kalle-Antti; Javanainen, Juha

    2003-01-01

    First introduced to explain superconductivity, anomalous quantum correlations between degenerate electrons with equal and opposite momentum, i.e., Cooper pairs, are due physically to an electron-electron attraction mediated by the exchange of lattice-vibration-generated phonons. Cooper-like pairing between different chemical species was immediately suggested to explain the larger excitation energy for nuclei with even-rather-than-odd numbers of nucleons, although unambiguous evidence for proton-neutron pairs never manifested. Here we report the prospect of Cooper pairing between different chemical species in a degenerate Fermi atom-molecule mixture submerged in a Bose condensate of atoms, a state enabled via two-color Raman photoassociation of a Bose-Fermi mixture of degenerate atoms. Condensate density fluctuations replace the vibrating ion lattice of the superconductor, and phonon exchange induces atom-molecule Cooper pairing at about a third of the Fermi temperature.

  14. Multiple species reactive chemical transport in groundwater: A verification exercise

    International Nuclear Information System (INIS)

    Two multiple-species reactive chemical transport models (FASTCHEM and DYNAMIX) were tested against each other to check for consistency of solutions. For the particular problem studied, FASTCHEM and DYNAMIX led to differences in aqueous concentrations and mineral assemblages primarily because FASTCHEM ignores redox reactions in the transport phase of the calculations. Also, the spatial concentration profiles generated by FASTCHEM tend to be sharper than those generated by DYNAMIX because FASTCHEM is particularly designed to handle advection-dominated transport systems

  15. Chemical species of fission product ruthenium in the solution of irradiated uranium dioxide in nitric acid

    International Nuclear Information System (INIS)

    High performance liquid chromatography was applied to separate the ruthenium species in the solution of irradiated uranium dioxide in 1 N nitric acid. The separation column was made of a strongly acidic cation exchanger of sulfonic acid type in a Teflon tube. In order to avoid interconversion of the species during separation, elution of the species was performed by 1 N nitric acid without changing the concentration of nitric acid. With this method, not only cationic species but also anionic and neutral species were separated from each other with good resolution. More than 24 chemical species of ruthenium were separated. The ionic valences of the species were determined from their cation and anion exchange behavior in nitric acid. The main species were four anionic species, six neutral species, seven monovalent cations, three divalent cations and four trivalent cations. The relative abundance of the species was determined as a function of elapsed time from the dissolution of irradiated uranium dioxide. Equilibrium between the species was not established even a half-year after dissolution of the irradiated uranium dioxide in nitric acid solution. The extractabilities of the species were determined for a 100% TBP Tri-n-butyl phosphate)-1N nitric acid system. Four of them, two anionic apcies and two monovalent cations in the nitric acid solution, were extracted appreciably by TBP. (orig.)

  16. Quantum chemical investigation on structures and energetics of Tungsten Fluoride (WF$_{n}^{f}$) species ( = 0, ±1; < 6)

    Indian Academy of Sciences (India)

    Ambrish Kumar Srivastava; Anoop Kumar Pandey; Neeraj Misra

    2015-10-01

    The present work deals with a systematic study on WF species using ab initio density functional method. The geometrical features related to the equilibrium structures of WF species up to = 5 are highlighted and the effect of addition as well as removal of an electron is discussed. The chemical stability of these species is discussed by calculating their HOMO-LUMO energy gap and binding energy per atom. The frontier molecular orbital surfaces are also analyzed. The energy based electronic properties such as ionization potential, electron affinity, absolute electronegativity and chemical hardness are also evaluated which provide insights into chemical reactivity of these species.

  17. Stabilizing Chemical Reality: The Analytic-Synthetic Ideal of Chemical Species

    Directory of Open Access Journals (Sweden)

    Mi Gyung Kim

    2014-12-01

    Full Text Available Chemistry is a science of analysis and synthesis. This simple statement characterizes chemistry as an art that breaks down the ‘nature out there’ and puts it back together in a form convenient to our use. It hides the fact that chemical substances are products of the analytic and synthetic methods invented at particular places and times in history. Objects of chemical inquiry are not a random collection of natural and artificial substances but are constituted by the stable laboratory procedures that shape chemical worlds. Recent concession to the historical contingency of chemical theories falls short of acknowledging this material contingency of chemical realities. To the latter end, this paper highlights how French chemists consolidated the analytic-synthetic ideal of chemical species by making their evolving analytic methods compatible to each other through a series of theoretical moments and thereby stabilized their objects of inquiry, theory domains (composition, affinity, and constitution and disciplinary terrain. Stabilizing chemical substances has always required normalizing the methods of identifying them and a comprehensive classification that naturalizes them.

  18. Chemical compositions of two different Thymus species essential oils

    OpenAIRE

    Samira Jaberi; Mahmoodreza Moein; Azizolah Jafari; Forough Karami

    2015-01-01

    Thymus is one of the most important members of Lamiaceae family. Aerial parts of the plant have been widely used in medicine. It has been reported that most of these effects are related to phenolic compounds especially thymol and carvacrol in Thymus essential oil. In this study, aerial parts of Thymus daenensis and Thymus lancifolius were collected from Kohgiluyeh and Boyer-Ahmad, Iran. Essential oils of aerial parts of these plants were gained by the hydrodistillation method and the chemical...

  19. MICROMORPHOLOGICAL AND CHEMICAL ASPECTS OF SOME LICHENIZED FUNGI SPECIES

    Directory of Open Access Journals (Sweden)

    PÎNDARU DIANA-MIHAELA

    2012-12-01

    Full Text Available At present, lichenized fungi are used in biomonitoring studies of air quality, being good receptors in the climate change. This paper aims to investigate surface micromorphology of Xanthoria parietina and Phaeophyscia orbicularis species (Lecanoromycetes, Ascomycota. The study also includes the investigation of selected chemical parameters as pH and conductivity of the lichenized fungi samples collected from various locations in the Iaşi County (Romania. Measurements of the pH provide information on the degree of pollution in the location of interest. Bark trees pH was also investigated in order to see if our matrix substrate influences the pH of the interest lichenized fungi samples.

  20. From chemical reactions to evolution: Emergence of species

    Science.gov (United States)

    Carletti, T.; Fanelli, D.

    2007-01-01

    The Chemoton model constitutes a minimalistic description of a protocell unit. The original formulation assumes three coupled chemical networks, representing a proto-metabolism, a template duplication and the membrane growth. An improved version is here proposed that explicitly incorporates the effects of the volume changes, due to the membrane growth. A stochastic mechanism is also introduced that mimics a stochastic source of error in the template duplication process. Numerical simulations are performed to monitor the time evolution of a family of protocells, under the chemoton hypothesis. An open-ended Darwinian evolution under the pressure of the environment is reproduced thus allowing to conclude that differentiation into species is an emergent property of the model.

  1. Chemical Species of Aluminum Lons in Acid Soils

    Institute of Scientific and Technical Information of China (English)

    XURENKOU; JIGUOLIANG

    1998-01-01

    Soil samples collected from several acid soils in Guangdong,Fujian,Zhejiang and Anhui provinces of the southern China were employded to characterize the chemical species of aluminum ions in the soils.The proportion or monoeric inorganic Al to total Al in soil solution was in the range of 19% to 70%,that of monomeric organlic Al (Al-OM) to total Al ranged from 7.7% to 69%,and that of the acid-soluble Al to total Al was generally smaller and was lower than 20% in most of the acid soils studied ,The Al-OM concentration in soil solution was postively correlated with the content of dissolved organic carbon(DOC) and aslo affected by the concentration of Al3+,The complexes of aluminum with fluoride(Al-F) were the predominant forms of inorganic Al,and the proportion of Al-F compexes to total inorganic Al increased with pH.Under strongly acid ondition,Al3+ was also a mjaor form of inorganic Al,and the proportio of Al3+ to total inorganic Al decreased with increasing pH.The,proportions of Al-OH and Al-SO4 complexes to total inorganic Al were small and were not larger than 10% in the most acid soils.The concentration of inorganic Al in solution depended largely on pH and the concentration of total F in soil solution,The concentrations of Al-OM,Al3+,Al-F and Al-OH complexes in topsoil were higher than those in subsoil and decreased with the increase in soil depth,The chemical species of aluminum ions were influenced by pH,The concentrations of Al-OM, Al3+,Al-F complexes and Al-OH complexes decreased with the increase in pH.

  2. Chemical species injection system for nuclear power plant

    International Nuclear Information System (INIS)

    A sample preparation device is disposed to injection pipelines of each system of a BWR type power plant, and a control device is connected to an electrolysis device and the sample preparation device respectively. An injection water analyzing device is connected to the exit of the sample preparation device, a sampling pipeline is connected to a reactor coolant cleanup system or a reactor recycling system, and a reactor water analyzing rack is connected to the sampling pipeline. The reactor water analyzing rack is connected to a signal processing system from a radiation concentration measuring device in reactor water, and the output of the signal processing system is connected to the control device. Chemical species for controlling water quality are formed from metal or metal compounds in a water solution by electrolysis. The concentration of each of the products is controlled and injected from a primary system or accompanied sampling systems of a reactor to the reactor. Parameters such as injection system concentration, reactor primary system concentration, radiation concentration in reactor water and corrosion potential are measured, to control injection, an amount of electrolysis or an injection concentration for the species. (N.H.)

  3. Chemical composition of some wild peanut species (Arachis L.) seeds.

    Science.gov (United States)

    Grosso, N R; Nepote, V; Guzmán, C A

    2000-03-01

    Oil, protein, ash, and carbohydrate contents, iodine value, and fatty acid and sterol compositions were studied in seeds of Arachis trinitensis, A. chiquitana, A. kempff-mercadoi, A. diogoi, A. benensis, A. appressipila, A. valida, A. kretschmeri, A. helodes, A. kuhlmannii, A. williamsii, A. sylvestris, A. matiensis, A. pintoi, A. hoehnei, A. villosa, and A. stenosperma. Oil content was greatest in A.stenosperma (mean value = 51.8%). The protein level was higher in A. sylvestris (30.1%) and A. villosa (29.5%). Mean value of oleic acid varied between 30.6% (A. matiensis) and 46.8% (Arachis villosa), and linoleic acid oscillated between 34.1% (A. villosa) and 47.4% (A. appressipila). The better oleic-to-linoleic (O/L) ratio was exhibited by A. villosa (1.38). Some species showed higher concentration of behenic acid. The greatest level of this fatty acid was found in A. matiensis (6.2%). Iodine value was lower in A. valida (99.2). The sterol composition in the different peanut species showed higher concentration of beta-sitosterol (mean values oscillated between 55.7 and 60.2%) followed by campesterol (12.4-16. 5%), stigmasterol (9.7-13.3%), and Delta(5)-avenasterol (9.7-13.4%). The chemical quality and stability of oils (iodine value and O/L ratio) from wild peanut studied in this work are not better than those of cultivated peanut. PMID:10725154

  4. [Advances in studies on chemical constituents and biological activities of Desmodium species].

    Science.gov (United States)

    Liu, Chao; Wu, Ying; Zhang, Qian-Jun; Kang, Wen-Yi; Zhang, Long; Zhou, Qing-Di

    2013-12-01

    The chemical constituents isolated from Desmodium species (Leguminosae) included terpenoids, flavonoids, steroids, alkaloids compounds. Modem pharmacological studies have showed that the Desmodium species have antioxidant, antibacterial, anti-inflammatory, hepatoprotective, diuretic, antipyretic, analgesic and choleretic activity. This article mainly has reviewed the research advances of chemical constituents and biological activities of Desmodium species since 2003. PMID:24791478

  5. Polyphasic taxonomy of Aspergillus fumigatus and related species

    DEFF Research Database (Denmark)

    Hong, S.B.; Go, S.J.; Shin, H.D.;

    2005-01-01

    The variability within Aspergillus fumigalus Fresenius and related species was examined using macro-, micro-morphology, growth temperature regimes and extrolite patterns. In addition, DNA analyses including partial beta-tubulin, calmodulin and actin gene sequences were used. Detailed examination ...

  6. Tree species traits influence soil physical, chemical, and biological properties in high elevation forests.

    Directory of Open Access Journals (Sweden)

    Edward Ayres

    mites did not. CONCLUSIONS/SIGNIFICANCE: Although some soil characteristics were unaffected by tree species identity, our results clearly demonstrate that these dominant tree species are associated with soils that differ in several physical, chemical, and biotic properties. Ongoing environmental changes in this region, e.g. changes in fire regime, frequency of insect outbreaks, changes in precipitation patterns and snowpack, and land-use change, may alter the relative abundance of these tree species over coming decades, which in turn will likely alter the soils.

  7. Expanding the species and chemical diversity of Penicillium section Cinnamopurpurea.

    Directory of Open Access Journals (Sweden)

    Stephen W Peterson

    Full Text Available A set of isolates very similar to or potentially conspecific with an unidentified Penicillium isolate NRRL 735, was assembled using a BLAST search of ITS similarity among described (GenBank and undescribed Penicillium isolates in our laboratories. DNA was amplified from six loci of the assembled isolates and sequenced. Two species in section Cinnamopurpurea are self-compatible sexual species, but the asexual species had polymorphic loci suggestive of sexual reproduction and variation in conidium size suggestive of ploidy level differences typical of heterothallism. Accordingly we use genealogical concordance analysis, a technique valid only in heterothallic organisms, for putatively asexual species. Seven new species were revealed in the analysis and are described here. Extrolite analysis showed that two of the new species, P. colei and P. monsserratidens produce the mycotoxin citreoviridin that has demonstrated pharmacological activity against human lung tumors. These isolates could provide leads in pharmaceutical research.

  8. Expanding the species and chemical diversity of Penicillium section Cinnamopurpurea

    OpenAIRE

    Peterson, Stephen W.; Jurjević, Željko; Frisvad, Jens Christian

    2015-01-01

    A set of isolates very similar to or potentially conspecific with an unidentified Penicillium isolate NRRL 735, was assembled using a BLAST search of ITS similarity among described (GenBank) and undescribed Penicillium isolates in our laboratories. DNA was amplified from six loci of the assembled isolates and sequenced. Two species in section Cinnamopurpurea are self-compatible sexual species, but the asexual species had polymorphic loci suggestive of sexual reproduction and variation in coni...

  9. Chemical recognition of partner plant species by foundress ant queens in Macaranga-Crematogaster myrmecophytism.

    Science.gov (United States)

    Inui, Y; Itioka, T; Murase, K; Yamaoka, R; Itino, T

    2001-10-01

    The partnership in the Crematogaster-Macaranga ant-plant interaction is highly species-specific. Because a mutualistic relationship on a Macaranga plant starts with colonization by a foundress queen of a partner Crematogaster species, we hypothesized that the foundress queens select their partner plant species by chemical recognition. We tested this hypothesis with four sympatric Macaranga species and their Crematogaster plant-ant species. We demonstrated that foundress Crematogaster queens can recognize their partner Macaranga species by contact with the surface of the seedlings, that they can recognize compounds from the stem surface of seedlings of their partner plant species, and that the gas chromatographic profiles are characteristic of the plant species. These findings support the hypothesis that foundress queens of the Crematogaster plant-ant species select their partner Macaranga species by recognizing nonvolatile chemical characteristics of the stem surfaces of seedlings. PMID:11710609

  10. Chemical compositions of two different Thymus species essential oils

    Directory of Open Access Journals (Sweden)

    Samira Jaberi

    2015-06-01

    Full Text Available Thymus is one of the most important members of Lamiaceae family. Aerial parts of the plant have been widely used in medicine. It has been reported that most of these effects are related to phenolic compounds especially thymol and carvacrol in Thymus essential oil. In this study, aerial parts of Thymus daenensis and Thymus lancifolius were collected from Kohgiluyeh and Boyer-Ahmad, Iran. Essential oils of aerial parts of these plants were gained by the hydrodistillation method and the chemical compositions were analyzed by gas chromatography/ Mass spectrometry (GC/MS. The major components of the essential oil of T. daenensis were thymol (39.91%, carvacrol (29.93%, linalool (5.55%, caryophyllene (3.5% and geraniol (3.09%, whereas the major components of the essential oil of T. lancifolius were: carvacrol (25.55%, thymol (20.79%, linalool (16.8%, α-terpineol (6.34%, borneol (4.00%, caryophyllene (3.98%, p-cymene (3.38% and cis-linalool oxide (3.21%. Linalool was reported as another major component in T. lancifolius

  11. Device for collecting chemical compounds and related methods

    Science.gov (United States)

    Scott, Jill R.; Groenewold, Gary S.; Rae, Catherine

    2013-01-01

    A device for sampling chemical compounds from fixed surfaces and related methods are disclosed. The device may include a vacuum source, a chamber and a sorbent material. The device may utilize vacuum extraction to volatilize the chemical compounds from the fixed surfaces so that they may be sorbed by the sorbent material. The sorbent material may then be analyzed using conventional thermal desorption/gas chromatography/mass spectrometry (TD/GC/MS) instrumentation to determine presence of the chemical compounds. The methods may include detecting release and presence of one or more chemical compounds and determining the efficacy of decontamination. The device may be useful in collection and analysis of a variety of chemical compounds, such as residual chemical warfare agents, chemical attribution signatures and toxic industrial chemicals.

  12. Climate-induced range overlap among closely related species

    Science.gov (United States)

    Krosby, Meade; Wilsey, Chad B.; McGuire, Jenny L.; Duggan, Jennifer M.; Nogeire, Theresa M.; Heinrichs, Julie A.; Tewksbury, Joshua J.; Lawler, Joshua J.

    2015-09-01

    Contemporary climate change is causing large shifts in biotic distributions, which has the potential to bring previously isolated, closely related species into contact. This has led to concern that hybridization and competition could threaten species persistence. Here, we use bioclimatic models to show that future range overlap by the end of the century is predicted for only 6.4% of isolated, congeneric species pairs of New World birds, mammals and amphibians. Projected rates of climate-induced overlap are higher for birds (11.6%) than for mammals (4.4%) or amphibians (3.6%). As many species will have difficulty tracking shifting climates, actual rates of future overlap are likely to be far lower, suggesting that hybridization and competition impacts may be relatively modest.

  13. Evolution of {sup 222} Rn and chemical species related with eruptive processes of the Popocatepetl volcano; Evolucion de {sup 222} Rn y especies quimicas relacionadas con procesos eruptivos del volcan Popocatepetl

    Energy Technology Data Exchange (ETDEWEB)

    Aranda, P.; Ceballos, S.; Cruz, D.; Hernandez, A.; Lopez, R.; Pena, P.; Salazar, S.; Segovia, N.; Tamez, E. [Instituto Nacional de Investigaciones Nucleares, A.P. 18-1027, 11801 Mexico D.F. (Mexico)

    1997-07-01

    The {sup 222} Rn monitoring in the Popocatepetl volcano was initiated on 1993. At December 21, 1994 it is initiated an eruptive stage in the volcano with gas emission, ashes and the lava dome formation on the crater at middle 1996. During all this time it has been determined radon concentrations on soils with active and passive detectors. In this work the changes in radon contents are reported also the physicochemical parameters in spring water related with the volcanic building associated to the recent activity of the volcano. (Author)

  14. Closing in on chemical bonds by opening up relativity theory.

    Science.gov (United States)

    Whitney, Cynthia K

    2008-03-01

    This paper develops a connection between the phenomenology of chemical bonding and the theory of relativity. Empirical correlations between electron numbers in atoms and chemical bond stabilities in molecules are first reviewed and extended. Quantitative chemical bond strengths are then related to ionization potentials in elements. Striking patterns in ionization potentials are revealed when the data are viewed in an element-independent way, where element-specific details are removed via an appropriate scaling law. The scale factor involved is not explained by quantum mechanics; it is revealed only when one goes back further, to the development of Einstein's special relativity theory. PMID:19325749

  15. 21 CFR 1300.02 - Definitions relating to listed chemicals.

    Science.gov (United States)

    2010-04-01

    ... Substances Import and Export Act, as amended (84 Stat. 1285; 21 U.S.C. 951) as amended. (2) The term... other legal entity who manufactures, distributes, imports, or exports a listed chemical, a tableting... 21 Food and Drugs 9 2010-04-01 2010-04-01 false Definitions relating to listed chemicals....

  16. First Chemical Analysis and Characterization of the Male Species-Specific Cephalic Labial-Gland Secretions of South American Bumblebees.

    Science.gov (United States)

    Brasero, Nicolas; Martinet, Baptiste; Urbanová, Klára; Valterová, Irena; Torres, Alexandra; Hoffmann, Wolfgang; Rasmont, Pierre; Lecocq, Thomas

    2015-10-01

    The evolution of signals and reproductive traits involved in the pre-mating recognition has been in focus of abundant research in several model species, such as bumblebees (genus Bombus). However, the most-studied bumblebee reproductive trait, the male cephalic labial gland secretions (CLGS), remains unknown among bumblebee species from South America. In this study, the CLGS of five South American bumblebees of the subgenera Thoracobombus (Bombus excellens and B. atratus) and Cullumanobombus (B. rubicundus, B. hortulanus, and B. melaleucus) were investigated, by comparing the chemical compositions of their secretions to those of closely related European species. The results showed an obvious interspecific differentiation in both subgenera. The interspecific differentiation among the species of the Thoracobombus subgenus involved different compounds present at high contents (main compounds), while those of the Cullumanobombus subgenus shared the same main components. This suggests that among the species of the Cullumanobombus subgenus, the differentiation in minor components could lead to species discrimination. PMID:26460558

  17. Various Chemical Strategies to Deceive Ants in Three Arhopala Species (Lepidoptera: Lycaenidae) Exploiting Macaranga Myrmecophytes

    OpenAIRE

    Inui, Yoko; Shimizu-kaya, Usun; Okubo, Tadahiro; Yamsaki, Eri; Itioka, Takao

    2015-01-01

    Macaranga myrmecophytes (ant-plants) are generally well protected from herbivore attacks by their symbiotic ants (plant-ants). However, larvae of Arhopala (Lepidoptera: Lycaenidae) species survive and develop on specific Macaranga ant-plant species without being attacked by the plant-ants of their host species. We hypothesized that Arhopala larvae chemically mimic or camouflage themselves with the ants on their host plant so that the larvae are accepted by the plant-ant species of their host....

  18. On the segregation of chemical species in a clear boundary layer over heterogeneous land surfaces

    Directory of Open Access Journals (Sweden)

    H. G. Ouwersloot

    2011-07-01

    Full Text Available We have systematically studied the inability of boundary layer turbulence to efficiently mix reactive species. This creates regions where the species are accumulated in a correlated or anti-correlated way, thereby modifying the mean reactivity. Here, we quantify this modification by the intensity of segregation, IS, and analyse the driving mechanisms: heterogeneity of the surface moisture and heat fluxes, various background wind patterns and non-uniform isoprene emissions. For typical conditions in the Amazon rain forest, applying homogeneous surface forcings, the isoprene-OH reaction rate is altered by less than 10 %. This is substantially smaller than the previously assumed IS of 50 % in recent large-scale model analyses of tropical rain forest chemistry. Spatial heterogeneous surface emissions enhance the segregation of species, leading to alterations of the chemical reaction rates of up to 20 %. For these cases, spatial segregation is induced by heterogeneities of the surface properties: a cool and wet forested patch characterized by high isoprene emissions is alternated with a warm and dry patch that represents pasture with relatively low isoprene emissions. The intensities of segregation are enhanced when the background wind direction is parallel to the borders between the patches and reduced in case of a perpendicular wind direction. The effects of segregation on trace gas concentrations vary per species. For the highly reactive OH, the differences in concentration averaged over the boundary layer are less than 2 % compared to homogeneous surface conditions, while the isoprene concentration is increased by as much as 12 % due to the reduced chemical reaction rates. These processes take place at the sub-grid scale of chemistry transport models and therefore need to be parameterized.

  19. Relative influence of chemical and non-chemical stressors on invertebrate communities

    NARCIS (Netherlands)

    Rico, Andreu; Brink, van den Paul J.; Leitner, Patrick; Graf, Wolfram; Focks, Andreas

    2016-01-01

    A key challenge for the ecological risk assessment of chemicals has been to evaluate the relative contribution of chemical pollution to the variability observed in biological communities, as well as to identify multiple stressor groups. In this study we evaluated the toxic pressure exerted by >

  20. Diffusion/Dispersion Transport of Chemically Reacting Species

    Energy Technology Data Exchange (ETDEWEB)

    Helgeson, Harold; Wenk, Hans-Rudolf

    2014-06-06

    The project characterized and quantified as a function of pressure, temperature and bulk composition the exergonic intra- and extracellular reactions catalyzed by thermo- and hyperthermophilic microbes at the oil-water interface in sedimentary basins. The reactions have been characterized and described quantitatively in terms of the chemical potentials of the components of the system in compositional hyperspace using thermodynamics, together with Gibbs free energy minimization and mass transfer computer experiments. A quantitative understanding of the biogeochemical processes responsible for the degradation of reservoired petroleum is fundamental to minimize the deleterious effects of microbial sulfidization and degradation processes.

  1. Relative species abundance of replicator dynamics with sparse interactions

    CERN Document Server

    Obuchi, Tomoyuki; Tokita, Kei

    2016-01-01

    A theory of relative species abundance on sparsely-connected networks is presented by investigating the replicator dynamics with symmetric interactions. Sparseness of a network involves difficulty in analyzing the fixed points of the equation, and we avoid this problem by treating large self interaction $u$, which allows us to construct a perturbative expansion. Based on this perturbation, we find that the nature of the interactions is directly connected to the abundance distribution, and some characteristic behaviors, such as multiple peaks in the abundance distribution and all species coexistence at moderate values of $u$, are discovered in a wide class of the distribution of the interactions. The all species coexistence collapses at a critical value of $u$, $u_c$, and this collapsing is regarded as a phase transition. To get more quantitative information, we also construct a non-perturbative theory on random graphs based on techniques of statistical mechanics. The result shows those characteristic behavior...

  2. Environmental Issues Related to Chemical Fertilizer Use in China

    Institute of Scientific and Technical Information of China (English)

    CAOZHIHONG

    1996-01-01

    The current status of chemical fertilizers production and consumption in China as well as their important roles in Chinese modern agriculture are discussed with special concerns to the environmental issues related to chemical fertilizer use.On the one hand.the total amount of chemical fertilizer produced is insufficient to meet the agricultural needs.On the other hand.the production and consumption of chemical fertilizers in China are obviously not balanced.In some areas over application of nitrogen fertilizers and loss of phosphate fertilizer due to soil erosion have resulted in some undesirable environmental problems such as increase of nitrate in water and eutrophication of water bodies.Maximum scientific uses of organic manures in combination with reasonable use of chemical fertilizers are part of good practices not only in increasuing soil productivity and keeping sustainable agriculture development but also in minimizing their detrimental effects on the environment.

  3. Computing multi-species chemical equilibrium with an algorithm based on the reaction extents

    DEFF Research Database (Denmark)

    Paz-Garcia, Juan Manuel; Johannesson, Björn; Ottosen, Lisbeth M.;

    2013-01-01

    A mathematical model for the solution of a set of chemical equilibrium equations in a multi-species and multiphase chemical system is described. The computer-aid solution of model is achieved by means of a Newton-Raphson method enhanced with a line-search scheme, which deals with the non-negative...

  4. Chemical espionage by parasitic wasps. How Trichogramma species exploit moth sex pheromone systems.

    NARCIS (Netherlands)

    Noldus, L.P.J.J.

    1989-01-01

    Interactions between insects are for a great deal mediated by semiochemicals. For instance, female moths release specific volatile chemicals in order to attract males of the same species. These substances are called sex pheromones. Egg parasitoids use various chemical cues in their search for hosts,

  5. Study of various chemical species behaviour for contamination risk

    International Nuclear Information System (INIS)

    The goal of this paper is to precise the behaviour of different radiochemical species in the primary coolant of PWR plants. Managing these pollutants must lead: To limit workers contamination risk to avoid incidental dissemination in the containment atmosphere when the primary circuit is opened; To limit reactor coolant system (RCS) walls ''over-contamination'' to decrease the dose rates during the maintenance operations. In French Plants, Co 60, iodine, silver and antimony represent the major radiochemical pollutants which require a good understanding of the different phenomena to ensure the lowest contamination risks. The stakes deal with the control and the optimization of collective and individual doses including waste treatment with low costs. These stakes represent primordial elements of nuclear acceptability. (authors)

  6. Acoustic Aposematism and Evasive Action in Select Chemically Defended Arctiine (Lepidoptera: Erebidae) Species: Nonchalant or Not?

    Science.gov (United States)

    Dowdy, Nicolas J; Conner, William E

    2016-01-01

    Tiger moths (Erebidae: Arctiinae) have experienced intense selective pressure from echolocating, insectivorous bats for over 65 million years. One outcome has been the evolution of acoustic signals that advertise the presence of toxins sequestered from the moths' larval host plants, i.e. acoustic aposematism. Little is known about the effectiveness of tiger moth anti-bat sounds in their natural environments. We used multiple infrared cameras to reconstruct bat-moth interactions in three-dimensional (3-D) space to examine how functional sound-producing organs called tymbals affect predation of two chemically defended tiger moth species: Pygarctia roseicapitis (Arctiini) and Cisthene martini (Lithosiini). P. roseicapitis and C. martini with intact tymbals were 1.8 and 1.6 times less likely to be captured by bats relative to those rendered silent. 3-D flight path and acoustic analyses indicated that bats actively avoided capturing sound-producing moths. Clicking behavior differed between the two tiger moth species, with P. roseicapitis responding in an earlier phase of bat attack. Evasive flight behavior in response to bat attacks was markedly different between the two tiger moth species. P. roseicapitis frequently paired evasive dives with aposematic sound production. C. martini were considerably more nonchalant and employed evasion in fewer interactions. Our results show that acoustic aposematism is effective at deterring bat predation in a natural context and that this strategy is likely to be the ancestral function of tymbal organs within the Arctiinae. PMID:27096408

  7. Structural and Chemical Characterization of Hardwood from Tree Species with Applications as Bioenergy Feedstocks

    Science.gov (United States)

    Çetinkol, Özgül Persil; Smith-Moritz, Andreia M.; Cheng, Gang; Lao, Jeemeng; George, Anthe; Hong, Kunlun; Henry, Robert; Simmons, Blake A.; Heazlewood, Joshua L.; Holmes, Bradley M.

    2012-01-01

    Eucalypt species are a group of flowering trees widely used in pulp production for paper manufacture. For several decades, the wood pulp industry has focused research and development efforts on improving yields, growth rates and pulp quality through breeding and the genetic improvement of key tree species. Recently, this focus has shifted from the production of high quality pulps to the investigation of the use of eucalypts as feedstocks for biofuel production. Here the structure and chemical composition of the heartwood and sapwood of Eucalyptus dunnii, E. globulus, E. pillularis, E. urophylla, an E. urophylla-E. grandis cross, Corymbia citriodora ssp. variegata, and Acacia mangium were compared using nuclear magnetic resonance spectroscopy (NMR), X-ray diffraction (XRD) and biochemical composition analysis. Some trends relating to these compositions were also identified by Fourier transform near infrared (FT-NIR) spectroscopy. These results will serve as a foundation for a more comprehensive database of wood properties that will help develop criteria for the selection of tree species for use as biorefinery feedstocks. PMID:23300786

  8. Structural and chemical characterization of hardwood from tree species with applications as bioenergy feedstocks.

    Science.gov (United States)

    Cetinkol, Özgül Persil; Smith-Moritz, Andreia M; Cheng, Gang; Lao, Jeemeng; George, Anthe; Hong, Kunlun; Henry, Robert; Simmons, Blake A; Heazlewood, Joshua L; Holmes, Bradley M

    2012-01-01

    Eucalypt species are a group of flowering trees widely used in pulp production for paper manufacture. For several decades, the wood pulp industry has focused research and development efforts on improving yields, growth rates and pulp quality through breeding and the genetic improvement of key tree species. Recently, this focus has shifted from the production of high quality pulps to the investigation of the use of eucalypts as feedstocks for biofuel production. Here the structure and chemical composition of the heartwood and sapwood of Eucalyptus dunnii, E. globulus, E. pillularis, E. urophylla, an E. urophylla-E. grandis cross, Corymbia citriodora ssp. variegata, and Acacia mangium were compared using nuclear magnetic resonance spectroscopy (NMR), X-ray diffraction (XRD) and biochemical composition analysis. Some trends relating to these compositions were also identified by Fourier transform near infrared (FT-NIR) spectroscopy. These results will serve as a foundation for a more comprehensive database of wood properties that will help develop criteria for the selection of tree species for use as biorefinery feedstocks. PMID:23300786

  9. Structural and Chemical Characterization of Hardwood from Tree Species with Applications as Bioenergy Feedstocks

    Energy Technology Data Exchange (ETDEWEB)

    Çetinkol, Özgül Persil; Smith-Moritz, Andreia M.; Cheng, Gang; Lao, Jeemeng; George, Anthe; Hong, Kunlun; Henry, Robert; Simmons, Blake A.; Heazlewood, Joshua L.; Holmes, Bradley M.; Zabotina, Olga A.

    2012-12-28

    Eucalypt species are a group of flowering trees widely used in pulp production for paper manufacture. For several decades, the wood pulp industry has focused research and development efforts on improving yields, growth rates and pulp quality through breeding and the genetic improvement of key tree species. Recently, this focus has shifted from the production of high quality pulps to the investigation of the use of eucalypts as feedstocks for biofuel production. Here the structure and chemical composition of the heartwood and sapwood of Eucalyptus dunnii, E. globulus, E. pillularis, E. urophylla, an E. urophylla-E. grandis cross, Corymbia citriodora ssp. variegata, and Acacia mangium were compared using nuclear magnetic resonance spectroscopy (NMR), X-ray diffraction (XRD) and biochemical composition analysis. Some trends relating to these compositions were also identified by Fourier transform near infrared (FT-NIR) spectroscopy. These results will serve as a foundation for a more comprehensive database of wood properties that will help develop criteria for the selection of tree species for use as biorefinery feedstocks.

  10. Acoustic Aposematism and Evasive Action in Select Chemically Defended Arctiine (Lepidoptera: Erebidae) Species: Nonchalant or Not?

    Science.gov (United States)

    Dowdy, Nicolas J.; Conner, William E.

    2016-01-01

    Tiger moths (Erebidae: Arctiinae) have experienced intense selective pressure from echolocating, insectivorous bats for over 65 million years. One outcome has been the evolution of acoustic signals that advertise the presence of toxins sequestered from the moths’ larval host plants, i.e. acoustic aposematism. Little is known about the effectiveness of tiger moth anti-bat sounds in their natural environments. We used multiple infrared cameras to reconstruct bat-moth interactions in three-dimensional (3-D) space to examine how functional sound-producing organs called tymbals affect predation of two chemically defended tiger moth species: Pygarctia roseicapitis (Arctiini) and Cisthene martini (Lithosiini). P. roseicapitis and C. martini with intact tymbals were 1.8 and 1.6 times less likely to be captured by bats relative to those rendered silent. 3-D flight path and acoustic analyses indicated that bats actively avoided capturing sound-producing moths. Clicking behavior differed between the two tiger moth species, with P. roseicapitis responding in an earlier phase of bat attack. Evasive flight behavior in response to bat attacks was markedly different between the two tiger moth species. P. roseicapitis frequently paired evasive dives with aposematic sound production. C. martini were considerably more nonchalant and employed evasion in fewer interactions. Our results show that acoustic aposematism is effective at deterring bat predation in a natural context and that this strategy is likely to be the ancestral function of tymbal organs within the Arctiinae. PMID:27096408

  11. Chemical analysis of endolymph and the growing otolith: fractionation of metals in freshwater fish species.

    Science.gov (United States)

    Melancon, Sonia; Fryer, Brian J; Markham, James L

    2009-06-01

    The fractionation of metals from water to otolith is an area of research that has received relatively limited attention, especially in freshwater systems. The objectives of the present research were to study the metal partitioning between otolith and endolymph of two freshwater species: Lake trout (Salvelinus namaycush), and burbot (Lota lota). We also included the chemical analyses of water and blood from fish of the same species collected in the same area but during different years. These results provide insight regarding the partition of metals between water and fish. This is one of the first studies to provide a range of trace metal concentrations for endolymph and the growing otolith (both aragonite and vaterite) and to directly measure otolith-endolymph partition coefficients for freshwater fish. The trace elements (Mg, Sr, and Ba) most often used as otolith elemental tracers were the ones with the lowest uptake from water to blood. We found that endolymph and whole blood had similar metal concentrations, with Mg and Fe being the only elements enriched in whole blood. Results showed few significant differences in trace metal content between wild lake trout and burbot endolymph (except for K, Mg, and Ba), but significant differences existed between their aragonitic otoliths. These results suggest two different crystallization processes in these species or the presence of different proteins (and/or organic matrices) that would selectively influence elemental incorporation in the otoliths. PMID:19154085

  12. Processing of Pheromone Information in Related Species of Heliothine Moths

    Directory of Open Access Journals (Sweden)

    Bente G. Berg

    2014-10-01

    Full Text Available In heliothine moths, the male-specific olfactory system is activated by a few odor molecules, each of which is associated with an easily identifiable glomerulus in the primary olfactory center of the brain. This arrangement is linked to two well-defined behavioral responses, one ensuring attraction and mating behavior by carrying information about pheromones released by conspecific females and the other inhibition of attraction via signal information emitted from heterospecifics. The chance of comparing the characteristic properties of pheromone receptor proteins, male-specific sensory neurons and macroglomerular complex (MGC-units in closely-related species is especially intriguing. Here, we review studies on the male-specific olfactory system of heliothine moths with particular emphasis on five closely related species, i.e., Heliothis virescens, Heliothis subflexa, Helicoverpa zea, Helicoverpa assulta and Helicoverpa armigera.

  13. On the Epistemological and Ontological Status of Chemical Relations

    Directory of Open Access Journals (Sweden)

    Andrés Bernal

    2010-12-01

    Full Text Available Following several authors, we point out the importance of relations in the conceptual frame of chemistry. We propose that an important characteristic of chemistry is given by the epistemological challenge associated with selectively related entities. We also suggest that internal relation ontologies have been seen by chemists as better suited for assessing this challenge, and that this ontological perspective has played an important role in shaping chemical concepts.

  14. Closing in on Chemical Bonds by Opening up Relativity Theory

    Directory of Open Access Journals (Sweden)

    Cynthia Kolb Whitney

    2008-03-01

    Full Text Available This paper develops a connection between the phenomenology of chemical bonding and the theory of relativity. Empirical correlations between electron numbers in atoms and chemical bond stabilities in molecules are first reviewed and extended. Quantitative chemical bond strengths are then related to ionization potentials in elements. Striking patterns in ionization potentials are revealed when the data are viewed in an element-independent way, where element-specific details are removed via an appropriate scaling law. The scale factor involved is not explained by quantum mechanics; it is revealed only when one goes back further, to the development of Einstein’s special relativity theory.

  15. PETN: Variation in Physical and Chemical Characteristics Related to Aging.

    Energy Technology Data Exchange (ETDEWEB)

    Monroe, D. C. (Dierdre Christina); Laintz, K. E. (Kenneth E.); Kramer, J. F. (John F.); Peterson, P. D. (Paul D.)

    2006-01-01

    Physical and chemical analyses of five PETN (pentaerythritol tetranitrate) batches have been conducted to assist in defining powder acceptance criteria for qualification of newly manufactured powders, as well as for examination of potential changes related to aging and thus changes in performance. Results showed that (1) repeatable Fisher Sub-Sieve Sizer measurements (which relate well to historic performance data) could be obtained with consistent sample setup and measurement techniques; (2) BET nitrogen adsorption estimates of surface area correlate well with Fisher measurements and appear less variable; (3) PharmaVision particle size analyses show promise in discriminating among PETN batches; and (4) SEMs are extremely useful in semi-quantitative discrimination among batches. Physical and chemical data will be related to performance data (to be obtained) to develop quantitative physical and chemical tests useful in predicting performance over time, i.e., as powders age.

  16. Species- and age-related variation in metal exposure and accumulation of two passerine bird species

    Energy Technology Data Exchange (ETDEWEB)

    Berglund, A.M.M., E-mail: asa.berglund@emg.umu.se [Section of Ecology, 20014 University of Turku (Finland); Koivula, M.J.; Eeva, T. [Section of Ecology, 20014 University of Turku (Finland)

    2011-10-15

    We measured the concentration of several elements (arsenic [As], calcium [Ca], cadmium [Cd], copper [Cu], nickel [Ni], lead [Pb], selenium [Se] and zinc [Zn]) in adult and nestling pied flycatchers (Ficedula hypoleuca) and great tits (Parus major) at different distances to a Cu-Ni smelter in 2009. Feces of nestlings generally failed to correspond with internal element concentrations but reflected the pollution exposure, indicating an increased stress by removal of excess metals. The uptake of Cu and Ni were regulated, but As, Cd, Pb and Se accumulated in liver tissue. Pied flycatchers had generally higher element concentrations than great tits. The higher accumulation of As and Pb in pied flycatcher livers was explained by a more efficient absorption, whereas the higher Cd concentration was primarily due to different intake of food items. Age-related differences occurred between the two species, though both Cd and Se accumulated with age. - Highlights: > We measured metal concentrations in feces and livers of two passerine species. > We examined species- and age-related differences in polluted environments. > Feces was evaluated as a useful non-destructive measure of increased stress. > Generally pied flycatchers accumulated higher concentrations than great tits. > Cadmium and selenium accumulated with age in both species. - Accumulation of metals in liver of two insectivorous passerines reflects inter-specific differences in diet, absorption rate and physiological requirements.

  17. Aspergillus fumigatus-Related Species in Clinical Practice

    Science.gov (United States)

    Lamoth, Frédéric

    2016-01-01

    Aspergillus fumigatus is the main etiologic agent of invasive aspergillosis (IA). Other Aspergillus species belonging to the section Fumigati (A. fumigatus complex) may occasionally be the cause of IA. These strains are often misidentified, as they cannot be distinguished from A. fumigatus by conventional morphological analysis and sequencing methods. This lack of recognition may have important consequences as these A. fumigatus-related species often display some level of intrinsic resistance to azoles and other antifungal drugs. A. lentulus, A. udagawae, A. viridinutans, and A. thermomutatus (Neosartorya pseudofischeri) have been associated with refractory cases of IA. Microbiologists should be able to suspect the presence of these cryptic species behind a putative A. fumigatus isolate on the basis of some simple characteristics, such as defect in sporulation and/or unusual antifungal susceptibility profile. However, definitive species identification requires specific sequencing analyses of the beta-tubulin or calmodulin genes, which are not available in most laboratories. Multiplex PCR assays or matrix-assisted laser desorption ionization – time-of-flight mass spectrometry (MALDI-TOF MS) gave promising results for rapid and accurate distinction between A. fumigatus and other Aspergillus spp. of the section Fumigati in clinical practice. Improved diagnostic procedures and antifungal susceptibility testing may be helpful for the early detection and management of these particular IA cases.

  18. Chemical exposure-response relationship between air pollutants and reactive oxygen species in the human respiratory tract.

    Science.gov (United States)

    Lakey, Pascale S J; Berkemeier, Thomas; Tong, Haijie; Arangio, Andrea M; Lucas, Kurt; Pöschl, Ulrich; Shiraiwa, Manabu

    2016-01-01

    Air pollution can cause oxidative stress and adverse health effects such as asthma and other respiratory diseases, but the underlying chemical processes are not well characterized. Here we present chemical exposure-response relations between ambient concentrations of air pollutants and the production rates and concentrations of reactive oxygen species (ROS) in the epithelial lining fluid (ELF) of the human respiratory tract. In highly polluted environments, fine particulate matter (PM2.5) containing redox-active transition metals, quinones, and secondary organic aerosols can increase ROS concentrations in the ELF to levels characteristic for respiratory diseases. Ambient ozone readily saturates the ELF and can enhance oxidative stress by depleting antioxidants and surfactants. Chemical exposure-response relations provide a quantitative basis for assessing the relative importance of specific air pollutants in different regions of the world, showing that aerosol-induced epithelial ROS levels in polluted megacity air can be several orders of magnitude higher than in pristine rainforest air. PMID:27605301

  19. Chemical exposure-response relationship between air pollutants and reactive oxygen species in the human respiratory tract

    Science.gov (United States)

    Lakey, Pascale S. J.; Berkemeier, Thomas; Tong, Haijie; Arangio, Andrea M.; Lucas, Kurt; Pöschl, Ulrich; Shiraiwa, Manabu

    2016-01-01

    Air pollution can cause oxidative stress and adverse health effects such as asthma and other respiratory diseases, but the underlying chemical processes are not well characterized. Here we present chemical exposure-response relations between ambient concentrations of air pollutants and the production rates and concentrations of reactive oxygen species (ROS) in the epithelial lining fluid (ELF) of the human respiratory tract. In highly polluted environments, fine particulate matter (PM2.5) containing redox-active transition metals, quinones, and secondary organic aerosols can increase ROS concentrations in the ELF to levels characteristic for respiratory diseases. Ambient ozone readily saturates the ELF and can enhance oxidative stress by depleting antioxidants and surfactants. Chemical exposure-response relations provide a quantitative basis for assessing the relative importance of specific air pollutants in different regions of the world, showing that aerosol-induced epithelial ROS levels in polluted megacity air can be several orders of magnitude higher than in pristine rainforest air. PMID:27605301

  20. Chemical and genetic characterization of Phlomis species and wild hybrids in Crete.

    Science.gov (United States)

    Georgescu, Luciana; Stefanakis, Michalis K; Kokkini, Stella; Katerinopoulos, Haralambos E; Pirintsos, Stergios A

    2016-02-01

    The genus Phlomis is represented in the island of Crete (Greece, Eastern Mediterranean) by three species Phlomis cretica C. Presl., Phlomis fruticosa L., the island endemic Phlomis lanata Willd. and three hybrids Phlomis x cytherea Rech.f. (P. cretica x P. fruticosa), Phlomis x commixta Rech.f. (P. cretica x P. lanata) and Phlomis x sieberi Vierh. (P. fruticosa x P. lanata). This work describes (a) the profile of hybrids and parental species concerning their volatile compounds, (b) the suitability of ribosomal nuclear (ITS region), chloroplast (trnH-psbA), and AFLP markers to identify hybrids and (c) their competence to characterize the different chemotypes of both hybrids and their parental species. The cluster analysis and PCA constructed from chemical data (volatile oils) suggest that there are three groups of taxa. Group IA includes P. cretica and P. fruticosa, group IB includes P. x cytherea, whereas group II consists of P. x commixta, P. x sieberi and P. lanata. Volatile compounds detected only in the hybrids P. x sieberi and P. x commixta correspond to the 3% of the total compounds, value that is much higher in P. x cytherea (21%). Neighbor-joining, statistical parsimony analysis and the observations drawn from ribotypes spectrum of ITS markers divided Phlomis species in two groups, P. lanata and the complex P. cretica/P. fruticosa. In contrast to the ITS region, the plastid DNA marker follows a geographically related pattern. Neighbor-Net, PCA and Bayesian assignment analysis performed for AFLP markers separated the genotypes into three groups corresponding to populations of P. cretica, P. fruticosa, and P. lanata, respectively, while populations of P. x commixta, P. x cytherea, and P. x sieberi presented admixed ancestry. Most of the P. x cytherea samples were identified as F1 hybrids by Bayesian assignment test, while those of P. x commixta and P. x sieberi were identified as F2 hybrids. Overall, high chemical differentiation is revealed in one of the

  1. Stabilizing Chemical Reality: The Analytic-Synthetic Ideal of Chemical Species

    OpenAIRE

    Mi Gyung Kim

    2014-01-01

    Chemistry is a science of analysis and synthesis. This simple statement characterizes chemistry as an art that breaks down the ‘nature out there’ and puts it back together in a form convenient to our use. It hides the fact that chemical substances are products of the analytic and synthetic methods invented at particular places and times in history. Objects of chemical inquiry are not a random collection of natural and artificial substances but are constituted by the stable laboratory procedur...

  2. Some inconvenient truths about biosignatures involving two chemical species on Earth-like exoplanets

    CERN Document Server

    Rein, Hanno; Spiegel, David S

    2014-01-01

    The detection of strong thermochemical disequilibrium in the atmosphere of an extrasolar planet is thought to be a potential biosignature. In this article we present a new kind of false positive that can mimic a disequilibrium or any other biosignature that involves two chemical species. We consider a scenario where the exoplanet hosts a moon that has its own atmosphere and neither of the atmospheres is in chemical disequilibrium. Our results show that the integrated spectrum of the planet and the moon closely resembles that of a single object in strong chemical disequilibrium. We derive a firm limit on the maximum spectral resolution that can be obtained for both directly-imaged and transiting planets. The spectral resolution of even idealized space-based spectrographs that might be achievable in the next several decades is in general insufficient to break the degeneracy. Both chemical species can only be definitively confirmed in the same object if absorption features of both chemicals can be unambiguously ...

  3. Chemically active species in an Oxygen Inductively Coupled Plasma

    Science.gov (United States)

    Ly, Nathaniel; Boffard, John; Lin, Chun; Wendt, Amy; Radovanov, Svetlana; Persing, Harold; Likhanskii, Alexandre

    2015-09-01

    Oxygen plasmas are used in a wide variety of applications including ion implantation and photoresist striping. Here we combine noninvasive optical emission spectroscopy (OES) measurements and numerical simulations to investigate the plasma parameters in both oxygen inductively coupled plasmas (ICP) and oxygen-argon ICPs. An emission model makes use of available electron impact excitation cross sections for atomic and molecular oxygen to relate measured O and O2+emission intensities to corresponding plasma parameters, including the electron temperature, electron density, and the dissociation fraction of the neutral oxygen. For plasma simulations we use the CRTRS, 2D/3D code that selfconsistently solves for ICP power deposition, electrostatic potential and plasma dynamics in the driftdiffusion approximation (or full momentum equations). Comparison of the experimental OES measurements are used to check the validity of the plasma simulation which yields results that the OES approach has difficulty in measuring including the relative fluxes of O+ and O2+,which is important for ion implantation. The authors acknowledge support from NSF Grant PHY-1068670, and from Dr. Shahid Rauf for developing CRTRS.

  4. Lactobacillus herbarum sp. nov., a species related to Lactobacillus plantarum.

    Science.gov (United States)

    Mao, Yuejian; Chen, Meng; Horvath, Philippe

    2015-12-01

    Strain TCF032-E4 was isolated from a traditional Chinese fermented radish. It shares >99% 16S rRNA sequence identity with L. plantarum, L. pentosus and L. paraplantarum. This strain can ferment ribose, galactose, glucose, fructose, mannose, mannitol, N-acetylglucosamine, amygdalin, arbutin, salicin, cellobiose, maltose, lactose, melibiose, trehalose and gentiobiose. It cannot ferment sucrose, which can be used by L. pentosus, L. paraplantarum, L. fabifermentans, L. xiangfangensis and L. mudanjiangensis, as well as most of the L. plantarum strains (88.7%). TCF032-E4 cannot grow at temperature above 32 °C. This strain shares 78.2-83.6% pheS (phenylalanyl-tRNA synthetase alpha subunit) and 89.5-94.9% rpoA (RNA polymerase alpha subunit) sequence identity with L. plantarum, L. pentosus, L. paraplantarum, L. fabifermentans, L. xiangfangensis and L. mudanjiangensis. These results indicate that TCF032-E4 represents a distinct species. This hypothesis was further confirmed by whole-genome sequencing and comparison with available genomes of related species. The draft genome size of TCF032-E4 is approximately 2.9 Mb, with a DNA G+C content of 43.5 mol%. The average nucleotide identity (ANI) between TCF032-E4 and related species ranges from 79.0 to 81.1%, the highest ANI value being observed with L. plantarum subsp. plantarum ATCC 14917T. A novel species, Lactobacillus herbarum sp. nov., is proposed with TCF032-E4T ( = CCTCC AB2015090T = DSM 100358T) as the type strain. PMID:26410554

  5. Retrotranspositions in orthologous regions of closely related grass species

    Directory of Open Access Journals (Sweden)

    Swigoňová Zuzana

    2006-08-01

    Full Text Available Abstract Background Retrotransposons are commonly occurring eukaryotic transposable elements (TEs. Among these, long terminal repeat (LTR retrotransposons are the most abundant TEs and can comprise 50–90% of the genome in higher plants. By comparing the orthologous chromosomal regions of closely related species, the effects of TEs on the evolution of plant genomes can be studied in detail. Results Here, we compared the composition and organization of TEs within five orthologous chromosomal regions among three grass species: maize, sorghum, and rice. We identified a total of 132 full or fragmented LTR retrotransposons in these regions. As a percentage of the total cumulative sequence in each species, LTR retrotransposons occupy 45.1% of the maize, 21.1% of the rice, and 3.7% of the sorghum regions. The most common elements in the maize retrotransposon-rich regions are the copia-like retrotransposons with 39% and the gypsy-like retrotransposons with 37%. Using the contiguous sequence of the orthologous regions, we detected 108 retrotransposons with intact target duplication sites and both LTR termini. Here, we show that 74% of these elements inserted into their host genome less than 1 million years ago and that many retroelements expanded in size by the insertion of other sequences. These inserts were predominantly other retroelements, however, several of them were also fragmented genes. Unforeseen was the finding of intact genes embedded within LTR retrotransposons. Conclusion Although the abundance of retroelements between maize and rice is consistent with their different genome sizes of 2,364 and 389 Mb respectively, the content of retrotransposons in sorghum (790 Mb is surprisingly low. In all three species, retrotransposition is a very recent activity relative to their speciation. While it was known that genes re-insert into non-orthologous positions of plant genomes, they appear to re-insert also within retrotransposons, potentially

  6. Various chemical strategies to deceive ants in three Arhopala species (lepidoptera: Lycaenidae exploiting Macaranga myrmecophytes.

    Directory of Open Access Journals (Sweden)

    Yoko Inui

    Full Text Available Macaranga myrmecophytes (ant-plants are generally well protected from herbivore attacks by their symbiotic ants (plant-ants. However, larvae of Arhopala (Lepidoptera: Lycaenidae species survive and develop on specific Macaranga ant-plant species without being attacked by the plant-ants of their host species. We hypothesized that Arhopala larvae chemically mimic or camouflage themselves with the ants on their host plant so that the larvae are accepted by the plant-ant species of their host. Chemical analyses of cuticular hydrocarbons showed that chemical congruency varied among Arhopala species; A. dajagaka matched well the host plant-ants, A. amphimuta did not match, and unexpectedly, A. zylda lacked hydrocarbons. Behaviorally, the larvae and dummies coated with cuticular chemicals of A. dajagaka were well attended by the plant-ants, especially by those of the host. A. amphimuta was often attacked by all plant-ants except for the host plant-ants toward the larvae, and those of A. zylda were ignored by all plant-ants. Our results suggested that conspicuous variations exist in the chemical strategies used by the myrmecophilous butterflies that allow them to avoid ant attack and be accepted by the plant-ant colonies.

  7. Chemical composition fluctuations in roots of Plumbago scandens L. in relation to floral development

    OpenAIRE

    Selma R. de Paiva; Lucilene A. Lima; Maria Raquel Figueiredo; Maria Auxiliadora C. Kaplan

    2011-01-01

    Plumbago scandens L. is a Brazilian tropical/subtropical species that occurs along the coast. Chemically it is mainly represented by naphthoquinones, flavonoids, terpenoids and steroids. The aim of the present work is to study quantitative changes in the root metabolic production of Plumbago scandens during different physiologic developmental stages relative to floration. The results indicated the presence of four substances in the extracts: plumbagin, epi-isoshinanolone, palmitic acid and si...

  8. Chemical composition in relation with biomass ash structure

    Science.gov (United States)

    Holubcik, Michal; Jandacka, Jozef

    2014-08-01

    Biomass combustion can be more complicated like combustion of fossil fuels because it is necessary to solve problems with lower ash melting temperature. It can cause a lot of problems during combustion process. Chemical composition of biomass ash has great impact on sinters and slags creation in ash because it affects structure of heated ash. In this paper was solved relation between chemical composition and structure of heated ash from three types of biomass (spruce wood, miscanthus giganteus and wheat straw). Amount of SiO2, CaO, MgO, Al2O3 and K2O was determined. Structure of heated ash was optically determined after heating to 1000 °C or 1200 °C. Results demonstrated that chemical composition has strong effect on structure and color of heated ash.

  9. Structural and Chemical Characterization of Hardwood from Tree Species with Applications as Bioenergy Feedstocks

    OpenAIRE

    Çetinkol, Özgül Persil; Smith-Moritz, Andreia M.; Cheng, Gang; Lao, Jeemeng; George, Anthe; Hong, Kunlun; Henry, Robert; Simmons, Blake A.; Heazlewood, Joshua L.; Holmes, Bradley M

    2012-01-01

    Eucalypt species are a group of flowering trees widely used in pulp production for paper manufacture. For several decades, the wood pulp industry has focused research and development efforts on improving yields, growth rates and pulp quality through breeding and the genetic improvement of key tree species. Recently, this focus has shifted from the production of high quality pulps to the investigation of the use of eucalypts as feedstocks for biofuel production. Here the structure and chemical...

  10. Chemical Constituents and Antibacterial and Antifungal Activities of Two Aglaia Species

    Institute of Scientific and Technical Information of China (English)

    WANG,Bin-Gui; LI,Xiao-Ming; PROKSCH,Peter

    2004-01-01

    @@ In the course of searching bioactive natural products from the plant genus Aglaia, we selected two species, A. cordata and A. testicularis, for further chemical study. Totally twenty natural compounds were obtained and structurally elucidated with which eleven of them were discovered for the first time. Among these compounds, lignans, rocaglamides,aglains and bisamides were the main constituents of the two plant species. The results from a bioactive screening indicated that some of the lignans possess potent antibacterial and antifungal activity.

  11. Study of Chemical Constituents and Medicinal Uses of Indicator Species of District Bannu

    OpenAIRE

    Rehman ullah khan; Saad Ullah khan; Sultan Mehmood; Ihsan ullah; Aziz Khan

    2013-01-01

    The present study was carried out to assess record and report the chemical constituents and ethnobotanical knowledge of indicator species of District Bannu. Medicinal outlines of about 57 plants were recorded through interview local people i.e. farmers, herbalists, hakims and Medicinal plants user dealers. The present investigation comprises the indigenous uses of 57 species belonging to 36 families of Angiosperms based upon their utility. Out of this rich Medicinal germplasm, 66.15% plants a...

  12. Comparative human and rat neurospheres reveal species differences in chemical effects on neurodevelopmental key events.

    Science.gov (United States)

    Baumann, Jenny; Gassmann, Kathrin; Masjosthusmann, Stefan; DeBoer, Denise; Bendt, Farina; Giersiefer, Susanne; Fritsche, Ellen

    2016-06-01

    The developing brain is highly vulnerable to the adverse effects of chemicals, resulting in neurodevelopmental disorders in humans. Currently, animal experiments in the rat are the gold standard for developmental neurotoxicity (DNT) testing; however, these guideline studies are insufficient in terms of animal use, time and costs and bear the issue of species extrapolation. Therefore, the necessity for alternative methods that predict DNT of chemicals faster, cheaper and with a high predictivity for humans is internationally agreed on. In this respect, we developed an in vitro model for DNT key event screening, which is based on primary human and rat neural progenitor cells grown as neurospheres. They are able to mimic basic processes of early fetal brain development and enable an investigation of species differences between humans and rodents in corresponding cellular models. The goal of this study was to investigate to what extent human and rat neurospheres were able to correctly predict the DNT potential of a well-characterized training set of nine chemicals by investigating effects on progenitor cell proliferation, migration and neuronal differentiation in parallel to cell viability, and to compare these chemical responses between human and rat neurospheres. We demonstrate that (1) by correlating these human and rat in vitro results to existing in vivo data, human and rat neurospheres classified most compounds correctly and thus may serve as a valuable component of a modular DNT testing strategy and (2) human and rat neurospheres differed in their sensitivity to most chemicals, reflecting toxicodynamic species differences of chemicals. PMID:26216354

  13. Chemosensory responses to chemical and visual stimuli in five species of colubrid snakes

    Directory of Open Access Journals (Sweden)

    Anthony J. Saviola

    2012-07-01

    Full Text Available Snakes utilize chemical and visual stimuli during predation, however the emphasis on these cues and which cues are used to initiate predation varies among species. For example, rattlesnakes using the ambush strategy rely on chemical cues to locate an ambush station, then visual and thermal cues to initiate envenomating strikes, then chemical cues again to track prey. By contrast, many natricine snakes use chemical cues to initiate predation, increasing the rate of tongue flicking regardless of whether visual cues are present. The present study examined the individual and interactive effects of chemical and visual stimuli of prey on the predatory behavior of five snake taxa representing three feeding guilds. Bull snakes (Pituophis catenifer, Eastern Corn snakes (Pantherophis guttatus, and Midland Rat snakes (Scotophis spiloides have a diet primarily consisting of mammals; Western Fox snakes (Mintonius vulpina prey primarily on bird eggs; and Common Kingsnakes (Lampropeltis getula prey equally on mammals and reptiles. Three patterns of response to chemical and visual stimuli of the test prey (Mus musculus were observed. Mammal specialists responded to chemical cues. Fox snakes responded to visual cues, but not to chemical cues. Kingsnakes exhibited increased rates of tongue flicking in response to both chemical and visual stimuli. This study suggests correlations between the evolution of prey preference, foraging ecology and the utilization of chemical or visual stimuli by snakes.

  14. The Relations Among Threatened Species, Their Protection, and Taboos

    Directory of Open Access Journals (Sweden)

    Carl Folke

    1997-06-01

    Full Text Available We analyzed the role of taboos for the protection of species listed as "threatened" by the World Conservation Union (IUCN, and also for species known to be endemic and keystone. The study was limited to taboos that totally avoid or prohibit any use of particular species and their populations. We call them specific-species taboos . Through a literature review, 70 currently existing examples of specific-species taboos were identified and analyzed. The species avoided were grouped into biological classes. Threat categories were determined for each species, based on the IUCN Red Data Book. We found that ~ 30% of the identified taboos prohibit any use of species listed as threatened by IUCN. Of the specific-species taboos, 60% are set on reptiles and mammals. In these two classes, ~ 50% of the species are threatened, representing all of the threatened species in our analysis, with the exception of one bird species. Both endemic and keystone species that are important for ecosystem functions are avoided by specific-species taboos. Specific-species taboos have important ecological ramifications for the protection of threatened and ecologically important populations of species. We do not suggest that specific-species taboos are placed on species because they are, or have been, endangered; instead, we emphasize that species are avoided for a variety of other reasons. It is urgent to identify and analyze resource practices and social mechanisms of traditional societies, such as taboos, and to investigate their possible ecological significance. Although it may provide insights of value for conservation, not only of species, but also of ecosystem processes and functions, such information is being lost rapidly.

  15. Infestation of Glycaspis brimblecombei Moore on Thirteen Eucalyptus Species and Their Relationship with the Chemical Composition of Essential Oils

    Directory of Open Access Journals (Sweden)

    Alejandro Lucia

    2016-01-01

    Full Text Available Glycaspis brimblecombei is a pest insect that affects Eucalyptus genus and was firstly detected in Argentina in 2005. The main objective of this study is to determine the correlation between the level of infestation and chemical composition of essential oils extract. In an experimental plantation of 13 Eucalyptus species, the natural presence of the psyllid in the adaxial and abaxial faces of the leaves was determined and the mean number of individuals per species was calculated. The essential oils were extracted by hydrodistillation and analyzed for their chemical composition by gas chromatography-mass spectrometry. The results showed that 7 out of 13 species of Eucalyptus were not affected by G. brimblecombei: E. dunnii, E. globulus maidenii, E. globulus ssp. globulus, E. viminalis, E. cinerea, E. sideroxylon, and E. gunnii. The most affected Eucalyptus species were E. tereticornis and E. camaldulensis whereas the infestation in E. grandis × E. tereticornis and E. grandis × E. camaldulensis was intermediate. E. saligna and E. grandis were the least affected species. The relative concentrations of the compounds 1,8-cineole and α- and β-phellandrene in the essential oils are highly correlated to the rate of infestation with G. brimblecombei.

  16. Competitive strategies differentiate closely related species of marine actinobacteria.

    Science.gov (United States)

    Patin, Nastassia V; Duncan, Katherine R; Dorrestein, Pieter C; Jensen, Paul R

    2016-02-01

    Although competition, niche partitioning, and spatial isolation have been used to describe the ecology and evolution of macro-organisms, it is less clear to what extent these principles account for the extraordinary levels of bacterial diversity observed in nature. Ecological interactions among bacteria are particularly challenging to address due to methodological limitations and uncertainties over how to recognize fundamental units of diversity and link them to the functional traits and evolutionary processes that led to their divergence. Here we show that two closely related marine actinomycete species can be differentiated based on competitive strategies. Using a direct challenge assay to investigate inhibitory interactions with members of the bacterial community, we observed a temporal difference in the onset of inhibition. The majority of inhibitory activity exhibited by Salinispora arenicola occurred early in its growth cycle and was linked to antibiotic production. In contrast, most inhibition by Salinispora tropica occurred later in the growth cycle and was more commonly linked to nutrient depletion or other sources. Comparative genomics support these differences, with S. arenicola containing nearly twice the number of secondary metabolite biosynthetic gene clusters as S. tropica, indicating a greater potential for secondary metabolite production. In contrast, S. tropica is enriched in gene clusters associated with the acquisition of growth-limiting nutrients such as iron. Coupled with differences in growth rates, the results reveal that S. arenicola uses interference competition at the expense of growth, whereas S. tropica preferentially employs a strategy of exploitation competition. The results support the ecological divergence of two co-occurring and closely related species of marine bacteria by providing evidence they have evolved fundamentally different strategies to compete in marine sediments. PMID:26241505

  17. Endogenous pararetroviral sequences in tomato (Solanum lycopersicum and related species

    Directory of Open Access Journals (Sweden)

    Machado Margit Laimer

    2007-05-01

    Full Text Available Abstract Background Endogenous pararetroviral sequences (EPRVs are a recently discovered class of repetitive sequences that is broadly distributed in the plant kingdom. The potential contribution of EPRVs to plant pathogenicity or, conversely, to virus resistance is just beginning to be explored. Some members of the family Solanaceae are particularly rich in EPRVs. In previous work, EPRVs have been characterized molecularly in various species of Nicotiana including N.tabacum (tobacco and Solanum tuberosum (potato. Here we describe a family of EPRVs in cultivated tomato (Solanum lycopersicum L. and a wild relative (S.habrochaites. Results Molecular cloning and DNA sequence analysis revealed that tomato EPRVs (named LycEPRVs are most closely related to those in tobacco. The sequence similarity of LycEPRVs in S.lycopersicum and S.habrochaites indicates they are potentially derived from the same pararetrovirus. DNA blot analysis revealed a similar genomic organization in the two species, but also some independent excision or insertion events after species separation, or flanking sequence divergence. LycEPRVs share with the tobacco elements a disrupted genomic structure and frequent association with retrotransposons. Fluorescence in situ hybridization revealed that copies of LycEPRV are dispersed on all chromosomes in predominantly heterochromatic regions. Methylation of LycEPRVs was detected in CHG and asymmetric CHH nucleotide groups. Although normally quiescent EPRVs can be reactivated and produce symptoms of infection in some Nicotiana interspecific hybrids, a similar pathogenicity of LycEPRVs could not be demonstrated in Solanum L. section Lycopersicon [Mill.] hybrids. Even in healthy plants, however, transcripts derived from multiple LycEPRV loci and short RNAs complementary to LycEPRVs were detected and were elevated upon infection with heterologous viruses encoding suppressors of PTGS. Conclusion The analysis of LycEPRVs provides further

  18. Chemical profiles of body surfaces and nests from six Bornean stingless bee species.

    Science.gov (United States)

    Leonhardt, Sara Diana; Blüthgen, Nico; Schmitt, Thomas

    2011-01-01

    Stingless bees (Apidae: Meliponini) are the most diverse group of Apid bees and represent common pollinators in tropical ecosystems. Like honeybees they live in large eusocial colonies and rely on complex chemical recognition and communication systems. In contrast to honeybees, their ecology and especially their chemical ecology have received only little attention, particularly in the Old World. We previously have analyzed the chemical profiles of six paleotropical stingless bee species from Borneo and revealed the presence of species-specific cuticular terpenes- an environmentally derived compound class so far unique among social insects. Here, we compared the bees' surface profiles to the chemistry of their nest material. Terpenes, alkanes, and alkenes were the dominant compound groups on both body surfaces and nest material. However, bee profiles and nests strongly differed in their chemical composition. Body surfaces thus did not merely mirror nests, rendering a passive compound transfer from nests to bees unlikely. The difference between nests and bees was particularly pronounced when all resin-derived compounds (terpenes) were excluded and only genetically determined compounds were considered. When terpenes were included, bee profiles and nest material still differed, because whole groups of terpenes (e.g., sesquiterpenes) were found in nest material of some species, but missing in their chemical profile, indicating that bees are able to influence the terpene composition both in their nests and on their surfaces. PMID:21165680

  19. Influence of relative permeabilities on chemical enhanced oil recovery

    International Nuclear Information System (INIS)

    The main objective of chemical flooding is to mobilize the trapped oil remaining after a secondary recovery by waterflooding. This purpose is achieved by lowering the oil-water interfacial tension and producing partial miscibility between both phases. The chemical partition among phases (phase behavior) influences all other physical properties. In particular, it affects residual saturations determining relative permeability curves. Relative permeabilities rule the flow of each phase through the porous medium, so they play an essential role in oil recovery. Therefore, in this work we study the influence of relative permeabilities on the behavior of a surfactant-polymer flooding for the three different types of phase behavior. This analysis is performed applying the 3D compositional numerical simulator UTCHEM developed at the University of Texas at Austin. From the examples studied, we conclude that the influence of relative permeabilities depends on the type of phase behavior, i.e., as microemulsion relative permeability decreases, oil recovery increases for Types II(+) and III while slightly decreases for Type II(-). Moreover, a better displacement efficiency is observed for Types II(+) and III, because they behave similarly to a miscible displacement.

  20. Meeting the challenges related to material issues in chemical industries

    Indian Academy of Sciences (India)

    Baldev Raj; U Kamachi Mudali; T Jayakumar; K V Kasiviswanathn; K Natarajan

    2000-12-01

    Reliable performance and profitability are two important requirements for any chemical industry. In order to achieve high level of reliability and excellent performance, several issues related to design, materials selection, fabrication, quality assurance, transport, storage, inputs from condition monitoring, failure analysis etc. have to be adequately addressed and implemented. Technology related to nondestructive testing and monitoring of the plant is also essential for precise identification of defect sites and to take appropriate remedial decision regarding repair, replacement or modification of process conditions. The interdisciplinary holistic approach enhances the life of critical engineering components in chemical plants. Further, understanding the failure modes of the components through the analysis of failed components throws light on the choice of appropriate preventive measures to be taken well in advance, to have a control over the overall health of the plant. The failure analysis also leads to better design modification and condition monitoring methodologies, for the next generation components and plants. At the Indira Gandhi Centre for Atomic Research (IGCAR), Kalpakkam, a unique combination of the expertise in design, materials selection, fabrication, NDT development, condition monitoring, life prediction and failure analysis exists to obtain desired results for achieving high levels of reliability and performance assessment of critical engineering components in chemical industries. Case studies related to design, materials selection and fabrication aspects of critical components in nuclear fuel reprocessing plants, NDT development and condition monitoring of various components of nuclear power plants, and important failure investigations on critical engineering components in chemical and allied industries are discussed in this paper. Future directions are identified and planned approaches are briefly described.

  1. Application of a framework for extrapolating chemical effects across species in pathways controlled by estrogen receptor-á

    Science.gov (United States)

    Cross-species extrapolation of toxicity data from limited surrogate test organisms to all wildlife with potential of chemical exposure remains a key challenge in ecological risk assessment. A number of factors affect extrapolation, including the chemical exposure, pharmacokinetic...

  2. Size and chemical characterization of individual particles resulting from biomass burning of local southern California species

    International Nuclear Information System (INIS)

    The chemical composition and size of individual particles derived from combustion products of several species found in Southern California were obtained using aerosol time-of-flight mass spectrometry. The major inorganic species observed in > 90% of all biomass burning particles is potassium, indicated by the atomic ion, as well as clusters containing chloride, nitrate, and sulfate ions in the mass spectra. By obtaining positive and negative ion mass spectra it is possible to identify distinct chemical marker combinations in particles resulting from the burning of plant species, which in turn allows for differentiation from particles produced from other combustion sources such as vehicle emissions. Using these markers, particles derived from biomass burning were identified in ambient aerosol samples

  3. 19-Fluorine nuclear magnetic resonance chemical shift variability in trifluoroacetyl species

    OpenAIRE

    Sloop, Joseph

    2013-01-01

    Joseph C SloopSchool of Science and Technology, Georgia Gwinnett College, Lawrenceville, GA, USAAbstract: This review examines the variability of chemical shifts observed in 19-fluorine (19F) nuclear magnetic resonance spectra for the trifluoroacetyl (TFA) functional group. The range of 19F chemical shifts reported spectra for the TFA group varies generally from −85 to −67 ppm relative to CFCl3. The literature revealed several factors that impact chemical shifts of the TFA...

  4. Relating species abundance distributions to species-area curves in two Mediterranean-type shrublands

    Science.gov (United States)

    Keeley, J.E.

    2003-01-01

    Based on both theoretical and empirical studies there is evidence that different species abundance distributions underlie different species-area relationships. Here I show that Australian and Californian shrubland communities (at the scale from 1 to 1000 m2) exhibit different species-area relationships and different species abundance patterns. The species-area relationship in Australian heathlands best fits an exponential model and species abundance (based on both density and cover) follows a narrow log normal distribution. In contrast, the species-area relationship in Californian shrublands is best fit with the power model and, although species abundance appears to fit a log normal distribution, the distribution is much broader than in Australian heathlands. I hypothesize that the primary driver of these differences is the abundance of small-stature annual species in California and the lack of annuals in Australian heathlands. Species-area is best fit by an exponential model in Australian heathlands because the bulk of the species are common and thus the species-area curves initially rise rapidly between 1 and 100 m2. Annuals in Californian shrublands generate very broad species abundance distributions with many uncommon or rare species. The power function is a better model in these communities because richness increases slowly from 1 to 100 m2 but more rapidly between 100 and 1000 m2 due to the abundance of rare or uncommon species that are more likely to be encountered at coarser spatial scales. The implications of this study are that both the exponential and power function models are legitimate representations of species-area relationships in different plant communities. Also, structural differences in community organization, arising from different species abundance distributions, may lead to different species-area curves, and this may be tied to patterns of life form distribution.

  5. Impact of dust storm on chemical species of S, Cl and Ca in Shanghai atmosphere particles

    International Nuclear Information System (INIS)

    Background: Dust storm originated from the northwest region of China brought dust particles for Shanghai every spring, which resulted in serious particulate pollution. However, the studies of the impact of dust storm on the Shanghai atmospheric aerosols were limited to the concentrations of ions and elements. It is considered that the chemical species of atmospheric aerosols were much more necessary for the evaluation of the impact of dust storm on the particulate pollution in Shanghai. Purpose: Based on the elements concentration variations, backward trajectories of air masses and chlorine, calcium, sulfur species in aerosols during the dust event, the impact of dust storm on the chemical species of aerosols in Shanghai was studied. Methods: Elements concentrations of the samples were analyzed by X-ray fluorescence (XRF) based on synchrotron radiation. To identify the potential importance of different source regions on aerosol composition during dust events, the air mass trajectories were calculated by using the model HYSPLIT version 4 developed by NOAA/ARL. Chemical species of S, Cl, Ca were analyzed by synchrotron radiation X-ray absorption near edge structure (XANES). Sulfur K-edge XANES is capable of distinguishing various sulfate species in a non-destructive way and we used linear combination fitting procedure to quantify the concentrations of sulfate species in PM. Results: Elements concentration variations during the dust storm period showed that crust elements (Si, Al, Ca, K, Mg, Fe, Ti) in particles increased substantially during dust storm. However, pollution elements (S, Zn, Pb, Cu, V, Cr, As) from local region decreased by the clean effect of dust storm. Combined XANES of S, Cl, Ca in particulate samples with backward trajectories, the possible sources and reasons of their chemical species were studied. During dust storm, sulfur mainly existed as CaSO4·2H2O, Cl existed as organic chloride and Cl-, Ca existed as CaCO3. In the samples of other days

  6. Isolated and synergistic effects of chemical and structural defenses of two species of Tethya (Porifera: Demospongiae)

    Science.gov (United States)

    Ribeiro, Suzi Meneses; Cassiano, Keila Mara; Cavalcanti, Diana Negrão; Teixeira, Valéria Laneuville; Pereira, Renato Crespo

    2012-02-01

    Sponges are an important source of many interesting secondary metabolites with multiple ecological roles. Sponges can also use their spicules as a means of deterring consumers. The present study investigated the importance of chemicals and spicules as defensive strategies against predation for two congeneric sponge species from the Brazilian coast, Tethya rubra and Tethya maza. Crude extract and spicules differed somewhat in their effectiveness between these sponge species, with T. maza better defended than T. rubra against predation by the hermit crab Calcinus tibicen and synergistic effects stronger in T. rubra. These results show that defensive strategies may be similar between sponge species possessing monophyletic origin, and reveal the importance of research on congeneric species to understand the ecology and evolution of defensive strategies.

  7. Kaempferitrin from Uncaria guianensis (Rubiaceae) and its potential as a chemical marker for the species

    Energy Technology Data Exchange (ETDEWEB)

    Valente, Ligia M.M.; Liechocki, Sally; Barboza, Rodolfo S.; Paixao, Djavan da [Universidade Federal do Rio de Janeiro (UFRJ), RJ (Brazil). Inst. de Quimica], e-mail: valente@iq.ufrj.br; Bizarri, Carlos H.B.; Almeida, M. Beatriz S.; Benevides, Paulo J.C.; Siani, Antonio C. [Fundacao Oswaldo Cruz (FIOCRUZ), Rio de Janeiro, RJ (Brazil). Inst. de Tecnologia em Farmacos; Magalhaes, Alvicler [Universidade Estadual de Campinas (UNICAMP), SP (Brazil). Inst. de Quimica

    2009-07-01

    Uncaria tomentosa (Willd.) DC. and U. guianensis (Aubl.) Gmel., known as cat's claw, are large woody vines native to the Amazonian and Central American rain forests. The species contain, in different proportions, indole and oxindole alkaloids, triterpenoid glycosides, sterols and proanthocyanidins. U. tomentosa can be chemically identified by its oxindole alkaloid profile and content, whereas U. guianensis has no satisfactorily established chemical markers. This work describes, for the first time, the isolation of kaempferol-3,7-O-(a)-dirhamnoside (kaempferitrin) in Uncaria species. Screening for this compound in leaves, stems or bark of both species through TLC and HPLC-DAD-MS showed the presence of kaempferitrin only in the leaves and stems of U. guianensis, at a ratio almost thirty six times greater in the leaves than in the stems. These results reveal the selectivity of U. guianensis to produce this bioactive flavonoid glycoside, and suggest this compound as a potential chemical marker for the species.(author)

  8. USE OF AMAZONIAN SPECIES FOR AGING DISTILLED BEVERAGES: PHYSICAL AND CHEMICAL WOOD ANALYSIS

    Directory of Open Access Journals (Sweden)

    Jonnys Paz Castro

    2015-06-01

    Full Text Available The process of storing liquor in wooden barrels is a practice that aims to improve the sensory characteristics, such as color, aroma and flavor, of the beverage. The quality of the liquor stored in these barrels depends on wood characteristics such as density, permeability, chemical composition, anatomy, besides the wood heat treatment used to fabricate the barrels. Brazil has a great diversity of forests, mainly in the north, in the Amazon. This region is home to thousands of tree species, but is limited to the use of only a few native species to store liquors. The objective of this study was to determine some of the physical and chemical characteristics for four Amazon wood species. The results obtained in this study will be compared with others from woods that are traditionally used for liquor storage. The species studied were angelim-pedra (Hymenolobium petraeum Ducke cumarurana (Dipteryx polyphylla (Huber Ducke, jatobá (Hymenaea courbaril L. and louro-vermelho (Nectandra rubra (Mez CK Allen. The trees were collected from Precious Woods Amazon Company forest management area, in Silves, Amazonas. Analyzes such as: concentration of extractives, lignin amount, percentage of minerals (ash and tannin content, density, elemental analysis (CHNS-O and thermal analysis were done. It was observed that the chemical composition (lignin, holocellulose and elemental analysis (percentage of C, H, N and O of the woods have significant differences. The jatobá wood presented higher tannin content, and in the thermal analysis, was that which had the lowest mass loss.

  9. Specificity of psychiatric manifestations in relation to neurotoxic chemicals.

    Science.gov (United States)

    Ross, W D; Sholiton, M C

    1983-01-01

    Previous impressions of specificity of psychiatric manifestations in relation to particular chemical intoxications have been confirmed by comparisons of the symptoms and signs of two groups of individuals. Nine persons exposed to inorganic mercury had "erethism" and xenophobia in addition to non-specific features of central nervous system poisoning. Twelve men with heavy exposure to organotins, in contrast to ten men with light or no exposure, more frequently presented an unique alternation between outbursts of range and deep depression, the later lasting from a few hours to a few days. The more heavily exposed men also had a greater number of nonspecific symptoms from neurotoxins. PMID:6575580

  10. Impact of oil and related chemicals on the marine environment

    International Nuclear Information System (INIS)

    This review updates a previous review entitled ''Impact of Oil on the Marine Environment''. It covers oil and individual hydrocarbons, used lubricating oils, chemical control agents for oil spills, and wastes from offshore petroleum operations. It considers all major knowledge generated since the mid-1970s. The review covers its topics comprehensively, from a consideration of the composition, sources and inputs of oil to its ecological and human health effects and its effects on man's use of the sea. The review addresses several key questions on the present levels of contamination, the impact of hydrocarbons and related chemicals on marine biota, the recovery potential of marine ecosystems exposed to these contaminants, the degree of protection required for marine ecosystems known to be vulnerable and sensitive, and recommended research and other actions to fill gaps in knowledge. The review describes the hazards of marine oil pollution and associated chemicals and wastes as they are understood currently, and clarifies the importance of reducing oil inputs in coastal and offshore waters. It assists in considering fundamental questions, asked by the public and decision-makers alike, such as: how much oil is entering our oceans, and how much harm is it doing? (author)

  11. Some inconvenient truths about biosignatures involving two chemical species on Earth-like exoplanets.

    Science.gov (United States)

    Rein, Hanno; Fujii, Yuka; Spiegel, David S

    2014-05-13

    The detection of strong thermochemical disequilibrium in the atmosphere of an extrasolar planet is thought to be a potential biosignature. In this article we present a previously unidentified kind of false positive that can mimic a disequilibrium or any other biosignature that involves two chemical species. We consider a scenario where the exoplanet hosts a moon that has its own atmosphere and neither of the atmospheres is in chemical disequilibrium. Our results show that the integrated spectrum of the planet and the moon closely resembles that of a single object in strong chemical disequilibrium. We derive a firm limit on the maximum spectral resolution that can be obtained for both directly imaged and transiting planets. The spectral resolution of even idealized space-based spectrographs that might be achievable in the next several decades is in general insufficient to break the degeneracy. Both chemical species can only be definitively confirmed in the same object if absorption features of both chemicals can be unambiguously identified and their combined depth exceeds 100%. PMID:24778224

  12. The influence of electrohydrodynamic flow on the distribution of chemical species in positive corona

    Science.gov (United States)

    Pontiga, Francisco; Yanallah, Khelifa; Bouazza, R.; Chen, Junhong

    2015-09-01

    A numerical simulation of positive corona discharge in air, including the effect of electrohydrodynamic (EHD) motion of the gas, has been carried out. Air flow is assumed to be confined between two parallel plates, and corona discharge is produced around a thin wire, midway between the plates. Therefore, fluid dynamics equations, including electrical forces, have been solved together with the continuity equation of each neutral species. The plasma chemical model included 24 chemical reactions and ten neutral species, in addition to electrons and positive ions. The results of the simulation have shown that the influence of EHD flow on the spatial distributions of the species is quite different depending on the species. Hence, reactive species like atomic oxygen and atomic nitrogen are confined to the vicinity of the wire, and they are weakly affected by the EHD gas motion. In contrast, nitrogen oxides and ozone are efficiently dragged outside the active region of the corona discharge by the EHD flow. This work was supported by the Spanish Government Agency ``Ministerio de Ciencia e Innovación'' under Contract No. FIS2011-25161.

  13. Trans-species polymorphism at antimicrobial innate immunity cathelicidin genes of Atlantic cod and related species

    Directory of Open Access Journals (Sweden)

    Katrín Halldórsdóttir

    2015-05-01

    Full Text Available Natural selection, the most important force in evolution, comes in three forms. Negative purifying selection removes deleterious variation and maintains adaptations. Positive directional selection fixes beneficial variants, producing new adaptations. Balancing selection maintains variation in a population. Important mechanisms of balancing selection include heterozygote advantage, frequency-dependent advantage of rarity, and local and fluctuating episodic selection. A rare pathogen gains an advantage because host defenses are predominantly effective against prevalent types. Similarly, a rare immune variant gives its host an advantage because the prevalent pathogens cannot escape the host’s apostatic defense. Due to the stochastic nature of evolution, neutral variation may accumulate on genealogical branches, but trans-species polymorphisms are rare under neutrality and are strong evidence for balancing selection. Balanced polymorphism maintains diversity at the major histocompatibility complex (MHC in vertebrates. The Atlantic cod is missing genes for both MHC-II and CD4, vital parts of the adaptive immune system. Nevertheless, cod are healthy in their ecological niche, maintaining large populations that support major commercial fisheries. Innate immunity is of interest from an evolutionary perspective, particularly in taxa lacking adaptive immunity. Here, we analyze extensive amino acid and nucleotide polymorphisms of the cathelicidin gene family in Atlantic cod and closely related taxa. There are three major clusters, Cath1, Cath2, and Cath3, that we consider to be paralogous genes. There is extensive nucleotide and amino acid allelic variation between and within clusters. The major feature of the results is that the variation clusters by alleles and not by species in phylogenetic trees and discriminant analysis of principal components. Variation within the three groups shows trans-species polymorphism that is older than speciation and that

  14. Study on the chemical species of platinum group elements in geological samples by molecular activation analysis

    International Nuclear Information System (INIS)

    The chemical species of platinum group elements in some upper mantle-derived xenoliths from Eastern China are studied by molecular activation analysis, in which the chemical stepwise dissolution, nickel fire assay preconcentration and neutron activation analysis are jointly applied. The weighted sums of platinum group elements in 6 phases are in agreement with their total contents. The distribution patterns of platinum group elements in sulphides show that sulphide segregation is one of the important mechanisms for the fractionation of platinum group elements in upper mantle-derived material during partial melting

  15. Delimitation and characterisation of Talaromyces purpurogenus and related species

    DEFF Research Database (Denmark)

    Yilmaz, N.; Houbraken, J.; Hoekstra, E. S.;

    2012-01-01

    Taxa of the Talaromyces purpurogenus complex were studied using a polyphasic approach. ITS barcodes were used to show relationships between species of the T. purpurogenus complex and other Talaromyces species. RPB1, RPB2, beta-tubulin and calmodulin sequences were used to delimit phylogenetic...

  16. Chemical composition, antioxidant activity and bioaccessibility studies in phenolic extracts of two Hericium wild edible species

    OpenAIRE

    Heleno, Sandrina A.;; Barros, Lillian; Martins, Anabela; Queiroz, Maria João R. P.; Morales, Patricia; Fernández-Ruiz, Virginia; Ferreira, Isabel C. F. R.

    2015-01-01

    Mushrooms are rich sources of bioactive compounds such as phenolic acids. When ingested, these molecules have to be released from the matrix to be transformed/absorbed by the organism, so that they can exert their bioactivity. Several in vitro methodologies have been developed in order to evaluate the bioavailability of bioactive compounds. Herein, two Hericium species were analyzed for their chemical composition and antioxidant activity. Furthermore, an in vitro digestion of the mushrooms an...

  17. Species Composition and Relative Abundance of Mosquitoes in Swat, Pakistan

    Directory of Open Access Journals (Sweden)

    Ikram Ilahi

    2013-04-01

    Full Text Available A comprehensive survey of mosquitoes (Diptera: Culicidae was conducted in Swat Pakistan, from April to September during 2000. The survey involved the sampling of both, adult and immature stages of mosquitoes, and recovered a total of 21 species in five genera. Sampling of adult mosquitoes involved Pyrethrum spray collections, Man-biting collections, and Animal-biting collection. Immature stages of mosquitoes were collected from variety of habitats including springs, irrigation channels, rice fields, marshes, temporary pools, construction pools, agriculture pools, river margins, ditches, waste water drains, wells and tree holes. During the study most of the species built up their populations in June, July and August, while a few increased their populations in September. During the survey of immature stages, from a total of 138 samples taken, Cx. quinquefasciatus showed maximum frequency of occurrence (recovered from 48 samples followed by An. maculatus (17 samples, Cx. pseudovishnui (14 samples, An. annularis and An. stephensi (13 samples each, Cx. bitaeniorhynchus (11 samples, An. splendidus (5 samples and Cx. theileri (4 samples. The rest of the species occurred infrequently. The observations on habitat specificity of different species of mosquitoes showed the rice fields as the most favorable site for mosquito breeding (harboring 12 species followed by river margins (five species and temporary pools and springs (four species each. During this study Ae. aegypti was recovered from tyres in Mingora; it was not reported earlier from Swat.

  18. Alternative mechanisms of increased eggshell hardness of avian brood parasites relative to host species.

    Science.gov (United States)

    Igic, Branislav; Braganza, Kim; Hyland, Margaret M; Silyn-Roberts, Heather; Cassey, Phillip; Grim, Tomas; Rutila, Jarkko; Moskát, Csaba; Hauber, Mark E

    2011-11-01

    Obligate brood parasitic birds lay their eggs in nests of other species and parasite eggs typically have evolved greater structural strength relative to host eggs. Increased mechanical strength of the parasite eggshell is an adaptation that can interfere with puncture ejection behaviours of discriminating hosts. We investigated whether hardness of eggshells is related to differences between physical and chemical traits from three different races of the parasitic common cuckoo Cuculus canorus, and their respective hosts. Using tools developed for materials science, we discovered a novel correlate of increased strength of parasite eggs: the common cuckoo's egg exhibits a greater microhardness, especially in the inner region of the shell matrix, relative to its host and sympatric non-host species. We then tested predictions of four potential mechanisms of shell strength: (i) increased relative thickness overall, (ii) greater proportion of the structurally harder shell layers, (iii) higher concentration of inorganic components in the shell matrix, and (iv) elevated deposition of a high density compound, MgCO(3), in the shell matrix. We confirmed support only for hypothesis (i). Eggshell characteristics did not differ between parasite eggs sampled from different host nests in distant geographical sites, suggesting an evolutionarily shared microstructural mechanism of stronger parasite eggshells across diverse host-races of brood parasitic cuckoos. PMID:21561966

  19. Use of Wild Relatives and Closely Related Species to Adapt Common Bean to Climate Change

    Directory of Open Access Journals (Sweden)

    James D. Kelly

    2013-05-01

    Full Text Available Common bean (Phaseolus vulgaris L. is an important legume crop worldwide. However, abiotic and biotic stress limits bean yields to <600 kg ha−1 in low-income countries. Current low yields result in food insecurity, while demands for increased yields to match the rate of population growth combined with the threat of climate change are significant. Novel and significant advances in genetic improvement using untapped genetic diversity available in crop wild relatives and closely related species must be further explored. A meeting was organized by the Global Crop Diversity Trust to consider strategies for common bean improvement. This review resulted from that meeting and considers our current understanding of the genetic resources available for common bean improvement and the progress that has been achieved thus far through introgression of genetic diversity from wild relatives of common bean, and from closely related species, including: P. acutifolius, P. coccineus, P. costaricensis and P. dumosus. Newly developed genomic tools and their potential applications are presented. A broad outline of research for use of these genetic resources for common bean improvement in a ten-year multi-disciplinary effort is presented.

  20. Genetically modified yeast of the species Issatchenkia orientalis and closely relates species, and fermentation processes using same

    Science.gov (United States)

    Suominen, Pirkko; Aristidou, Aristos; Pentilla, Merja; Ilmen, Marja; Ruohonen, Laura; Koivuranta, Kari; Roberg-Perez, Kevin

    2012-01-17

    Cells of the species Issatchenkia orientalis and closely related yeast species are transformed with a vector to introduce an exogenous lactate dehydrogenase gene. The cells produce lactic acid efficiently and are resistant at low pH, high lactate titer conditions.

  1. Use of chemical elements of 1A family by tropical tree species

    International Nuclear Information System (INIS)

    This study aims to evaluate the distribution of K, Rb and Cs in leaves of trees of the Atlantic Forest through studies of correlation between the chemical elements. For this, we used the Instrumental Neutron Activation Analysis for the quantification of the chemical elements. The concentration ranges found were 6700-24000 mg / kg for K, 16 to 72mg / kg for Rb and 0.08 to 0,92mg / kg for Cs. As Rb has chemical similarity to K, is easily absorbed by plants, leading to a high value (0.9) of the Pearson correlation. For the correlation between K and Cs, no significant values were detected except for some species of the Myrtaceae family. However, average correlations (0.6 < r <0.8) between Rb-Cs were obtained for seven plant species of different families. The absence of a specific pattern using of K, Rb and Cs by plants showed great complexity in the distribution of chemical elements in the ecosystem

  2. Chemical composition of herbaceous grass and legume species grown for maximum biomass production

    Energy Technology Data Exchange (ETDEWEB)

    Cherney, J.H.; Johnson, K.D.; Volenec, J.J.; Anliker, K.S.

    1988-01-01

    Chemical composition varies among herbaceous biomass species. As conversion processes are refined, it may be advantageous to select feedstocks based on compositional differences between or within species. Our objective was to characterize chemical composition in a range of herbaceous crops evaluated for biomass potential in the upper midwest region of the United States. Two legume and six grass species were evaluated under maximum economic yield management conditions. Although neutral detergent fiber (NDF) concentration ranged from 480 g kg/sup -1/ in the legumes to 740 g kg/sup -1/ in the grasses, year, site, harvest, or nitrogen (N) fertilization did not have a large effect on NDF. Lignin concentration was as low as 38 g kg/sup -1/ in the six grasses, and as high as 102 g kg/sup -1/ in the two legumes. Xylose concentration reflected differences in total hemicellulose for grasses and legumes, with a range of 55 g kg/sup -1/ in legumes to 200 g kg/sup -1/ in grasses. Concentrations of the alkali-labile phenolic monomer, p-coumaric acid, ranged from 0.2 g kg/sup -1/ in legumes to 11 g kg/sup -1/ in grasses. Species differences were more important than year, site, harvest, or N fertilization in determining composition of these herbaceous crops.

  3. Interaction of chemical species with biological regulation of the metabolism of essential trace elements

    Energy Technology Data Exchange (ETDEWEB)

    Windisch, W. [Center of Life and Food Sciences, Technische Univ. Muenchen, Freising (Germany)

    2002-02-01

    Variations in the chemical speciation of dietary trace elements can result in the provision of different amounts of these micronutrients to the organism and might thus induce interactions with trace-element metabolism. The chemical species of Zn, Fe, Cu, and Mn can interact with other components of the diet even before reaching the site of absorption, e.g. by formation of poorly soluble complexes with phytic acid. This might considerably modify the amount of metabolically available trace elements; differences between absorptive capacity per se toward dietary species seems to be less important. Homeostasis usually limits the quantities of Zn, Fe, Cu, and Mn transported from the gut into the organism, and differences between dietary species are largely eliminated at this step. There is no homeostatic control of absorption of Se and I, and organisms seem to be passively exposed to influx of these micronutrients irrespective of dietary speciation. Inside the organism the trace elements are usually converted into a metabolically recognizable form, channeled into their biological functions, or submitted to homeostatically controlled excretion. Some dietary species can, however, be absorbed as intact compounds. As long as the respective quantities of trace elements are not released from their carriers, they are not recognized properly by trace element metabolism and might induce tissue accumulation, irrespective of homeostatic control. (orig.)

  4. Selection of potential cold water marine species for testing of oil dispersants, and chemically dispersed oil

    International Nuclear Information System (INIS)

    A study regarding marine species for toxicity testing for Alaska conditions was presented and the potential adverse impacts of a large marine oil spill in cold water were discussed with the objective to determine if the spill should be treated by the use of oil dispersants. Without dispersion, the oil can pollute marine epifauna and can deposit on beaches. The decision to apply dispersants to a marine oil spill requires knowledge of the toxicity of the undispersed oil to pelagic marine life occurring via natural dispersion as opposed to the toxicity of the oil-dispersant mixture. Most standard toxicity tests apply to warm water species. This paper discussed the need to have a standard test species relevant to Alaska waters for toxicity testing. In this study, toxicity testing was done according to the methods of the Chemical Response to Oil Spills : Ecological Effects Research Forum (CROSERF). The testing included capturing adult species in the winter and holding them until larval hatching. Toxicity testing was completed in a narrow time frame before hatching ceased. Many chemical samples were tested. Topsmelt, urchins, shellfish, mysids, copepods, pink salmon fry, and tidepool sculpin were considered by the author to be the most useful for certain types of toxicity testing. 29 refs

  5. Chemical constituents and biological activities of species of Justicia: a review

    Directory of Open Access Journals (Sweden)

    Geone M. Corrêa

    2012-02-01

    Full Text Available The Acanthaceae family is an important source of therapeutic drugs, and the ethnopharmacological knowledge of this family requires urgent documentation as several of its species are near extinction. Justicia is the largest genus of Acanthaceae, with approximately 600 species. The present work provides a review addressing the chemistry and pharmacology of the genus Justicia. In addition, the biological activities of compounds isolated from the genus are also covered. The chemical and pharmacological information in the present work may inspire new biomedical applications for the species of Justicia, considering atom economy, the synthesis of environmentally benign products without producing toxic by-products, the use of renewable sources of raw materials, and the search for processes with maximal efficiency of energy.

  6. Novel chemical species of Santilli’s magnegas in hadronic chemistry

    Energy Technology Data Exchange (ETDEWEB)

    Zodape, Sangesh P. [Department of Chemistry, Visvesvaraya National Institute of Technology, Nagpur – 440 010, India E-mail: sangesh02@gmail.com (India)

    2015-03-10

    In this paper we have reviewed the novel chemical species, the magnecules, synthesized by Santilli that comprises of individual atoms, radicals and ordinary molecules bonded through the magnetic attractive forces originating out of toroidal polarization of the orbitals of atomic electrons under strong magnetic fields. The main focus of this paper is to review the fabulous applications of Santill’s magnegas. The novel magnecular species of hydrogen and oxygen find their place in fuel industry especially in fuel cells with the increase in its power, efficiency and total output. In this account we have also considered the flame temperature report of the new magnecular species of gases. We emphasize the importance of this new field.

  7. The effect of elevated CO2 on the chemical composition and construction costs of leaves of 27 C3 species

    OpenAIRE

    POORTER, H.; Berkel, Y. van; Baxter, B; Hertog, J. den; Dijkstra, P.; Gifford, R.M.; K. L. Griffin; Roumet, C.; Roy, J; Wong, S. C.

    1997-01-01

    We determined the proximate chemical composition as well as the construction costs of leaves of 27 species, grown at ambient and at a twice-ambient partial pressure of atmospheric CO₂. These species comprised wild and agricultural herbaceous plants as well as tree seedlings. Both average responses across species and the range in response were considered. Expressed on a total dry weight basis, the main change in chemical composition due to CO₂ was the accumulation of total non-structural carbo...

  8. Chemical composition and digestibility of some browse plant species collected from Algerian arid rangelands

    Energy Technology Data Exchange (ETDEWEB)

    Boufennara, S.; Lopez, S.; Boussebouna, H.; Bodas, R.; Bouazza, L.

    2012-11-01

    Many wild browse and bush species are undervalued mainly because of insufficient knowledge about their potential feeding value. The objective was to evaluate some nutritional attributes of various Algerian browse and shub species (Atriplex halimus, Artemisia campestris, Artemisia herba-alba, Astragalus gombiformis, Calobota saharae, Retama raetam, Stipagrostis pungens, Lygeum spartum and Stipa tenacissima). Chemical composition, phenols and tannins concentration, in vitro digestibility, in vitro gas production kinetics and in vitro bio-assay for assessment of tannins using buffered rumen fluid, and in situ disappearence of the edible parts of the plants (leaves, thin twigs and flowers) were determined. In general, protein content in dicotyledon species was always greater than in monocotyledon grasses, these showing higher neutral and acid detergent fibre and lower lignin contents than dicots. The tannin concentrations varied considerably between species, but in general the plants investigated in this study had low tannin contents (except for Artemisia spp. and S. tenacissima). Monocots showed lower in vitro and in situ digestibilities, fermentation rate, cumulative gas production and extent of degradation than dicot species. The plants were clustered by principal components analysis in two groups: poor-quality grasses and the most digestible dicot species. Chemical composition (neutral detergent fibre and protein) and digestibility were the main influential variables determining the ranking. In conclusion, A. halimus, A. campestris, A. herba-alba and A. gombiformis can be considered of greater nutritional value than the highly fibrous and low digestible grasses (S. pungens, L. spartum and S. tenacissima) that should be considered emergency roughages. (Author) 46 refs.

  9. Cross-species amplification of microsatellite loci developed for Passiflora edulis Sims. in related Passiflora Species

    Directory of Open Access Journals (Sweden)

    Gilmara Alvarenga Fachardo Oliveira

    2013-10-01

    Full Text Available The aim of this study was to evaluate the selected 41 SSR markers developed for yellow passion fruit (Passiflora edulis f. flavicarpa Sims. for their transferability to 11 different Passiflora species. Twenty-one SSR were successfully amplified in 10 wild species of passion fruit producing 101 bands. All the markers were amplifiable for at least one species. The mean transferability was 68,8%, ranging from 15,4% (primer PE11 to 100 % (PE13, PE18, PE37, PE41 and PE88. Transferability was higher for the species from the Passiflora subgenus than for those from the Decaloba and Dysosmia subgenus. The results indicated a high level of nucleotide sequence conservation of the primer regions in the species evaluated, and consequently, they could potentially be used for the establishment of molecular strategies for use in passion fruit breeding and genetics.

  10. Wood Chemical Composition in Species of Cactaceae: The Relationship between Lignification and Stem Morphology

    OpenAIRE

    Jorge Reyes-Rivera; Gonzalo Canché-Escamilla; Marcos Soto-Hernández; Teresa Terrazas

    2015-01-01

    In Cactaceae, wood anatomy is related to stem morphology in terms of the conferred support. In species of cacti with dimorphic wood, a unique process occurs in which the cambium stops producing wide-band tracheids (WBTs) and produces fibers; this is associated with the aging of individuals and increases in size. Stem support and lignification have only been studied in fibrous tree-like species, and studies in species with WBTs or dimorphic wood are lacking. In this study, we approach this pro...

  11. The monoamine oxidase inhibitory activity of essential oils obtained from Eryngium species and their chemical composition.

    Science.gov (United States)

    Klein-Júnior, Luiz Carlos; Dos Santos Passos, Carolina; Tasso de Souza, Tiago Juliano; Gobbi de Bitencourt, Fernanda; Salton, Juliana; de Loreto Bordignon, Sérgio Augusto; Henriques, Amélia Teresinha

    2016-06-01

    Context Monoamine oxidase (MAO) inhibitors are used in the treatment of depression, anxiety disorders, and the symptomatic treatment of Parkinson's disease. Eryngium, the most representative of the Apiaceae family, is well known for the presence of essential oils (EOs), which have already demonstrated MAO inhibitory potential. Objective The objective of this study is to evaluate the MAO inhibitory capacity of the EOs obtained from Eryngium floribundum Cham. & Schlecht. (EF), E. eriophorum Cham. & Schlecht. (EE), E. nudicaule Lam. (EN), E. horridum Malme (EH), and E. pandanifolium Cham. & Schlecht. (EP). Materials and methods EOs were obtained from fresh whole plants by hydrodistillation (3 h). Chemical analyses were performed by GC/MS using apolar and polar columns, with oven temperature from 60 to 300 °C at 3 °C/min. The MAO-A and -B activities were evaluated in vitro by an end-point method using kynuramine as the substrate and mitochondrial suspension or human recombinant enzymes as the enzymatic source. DMSO 2%, clorgyline 10(-7) M, and pargyline 10(-6) M were used as controls. Results and discussion EFEO, EEEO, ENEO, EHEO, and EPEO GC/MS analysis showed (E)-caryophyllene (4.9-10.8%), germacrene D (0.6-35.1%), bicyclogermacrene (10.4-17.2), spathulenol (0.4-36.0%), and globulol (1.4-18.6%) as main constituents. None of the EOs inhibited MAO-A activity (4 and 40 μg/mL). However, EHEO inhibited MAO-B activity with an IC50 value of 5.65 μg/mL (1-200 μg/mL). Pentadecane (10 μM), its major constituent (53.5%), did not display significant MAO-B inhibition. Conclusion The study demonstrates the promising application of Eryngium species as a source of potential central nervous system bioactive secondary metabolites, specially related to neurodegenerative disorders. PMID:26810928

  12. Glenea coomani Pic, 1926 and its related species of South China with description of a new species

    Directory of Open Access Journals (Sweden)

    Meiying Lin

    2011-12-01

    Full Text Available Glenea coomani Pic, 1926 distributed in Vietnam, Laos and China is redescribed, and its sibling species, G. neohumerosa sp. n. is described from China (Guangxi, Hainan and Fujian and North Vietnam. They are separated from each other by differences in genitalia, and apical teeth and maculae of elytra. Another four related species and one subspecies are illustrated with short notes and new localities, and the lectotype and paralectotype of Glenea tonkinea Aurivillius, 1925 are designated. A key to the related species is presented.

  13. Line-of-sight-attenuation chemical species tomography through the level set method

    International Nuclear Information System (INIS)

    Chemical species tomography based on line-of-sight attenuation (LOSA-CST) is an emerging diagnostic for mapping the concentration of a gaseous species. Since laser absorption measurements alone are insufficient to specify a unique species concentration distribution, reconstruction algorithms must incorporate additional information that promotes presumed physical attributes of the distribution. This paper pioneers the application of the level set method to LOSA-CST. The species concentration distribution is initially represented by a signed distance function, which is progressively deformed by forces that scale with the difference between the measured and simulated absorption data, as well as deviation from spatial smoothness. The final distribution explains the LOSA data and is also qualitatively consistent with mixed advection/diffusion transport physics. The algorithm is demonstrated by solving a simulated laser tomography experiment on a turbulent methane plume. - Highlights: • Infer gas species concentration from line-of-sight-attenuation (LOSA) data. • Underling matrix problem is rank-deficient. • Additional information must be added based on presumed solution attributes. • Level set method promotes smooth, contiguous solution with distinct phase boundary. • Superior performance compared to simple Tikhonov smoothing/non-negativity

  14. Identification of a new Irgarol-1051 related s-triazine species in coastal waters

    International Nuclear Information System (INIS)

    A previously unknown s-triazine species present in commercially available Irgarol-1051, a booster biocide additive in copper-based antifouling paints for the replacement of organotin-based antifoulants, has been identified in the coastal aquatic environment. After careful isolation, purification and characterization by high resolution MS-MS and 1H NMR, the molecular structure of that unknown species is found to be N,N'-di-tert-butyl-6-methylthiol-s-triazine-2,4-diamine (designated as M3). Levels of Irgarol-1051, its major degradation product (M1) and the newly identified M3 in the coastal waters of Hong Kong, one of the world's busiest ports located in the southern coast of China, were monitored by SPME-GC-MS and SPME-GC-FID. Water samples from five locations within Hong Kong waters were analysed and the levels of Irgarol-1051, M1 and M3 were found to be 0.1-1.6 μg l-1, 36.8-259.0 μg l-1 and 0.03-0.39 μg l-1, respectively. Our results indicate that M3 is relatively stable against photo-and bio-degradation and may pose considerable risk to primary producer communities in the coastal marine environment. - An s-triazine species resists degradation and may be a chemical risk for marine coastal communities

  15. Hydrogenation of CO-bearing species on grains: unexpected chemical desorption of CO

    Science.gov (United States)

    Minissale, M.; Moudens, A.; Baouche, S.; Chaabouni, H.; Dulieu, F.

    2016-05-01

    The amount of methanol in the gas phase and the CO depletion from the gas phase are still open problems in astrophysics. In this work, we investigate solid-state hydrogenation of CO-bearing species via H-exposure of carbon monoxide, formaldehyde, and methanol-thin films deposited on cold surfaces, paying attention to the possibility of a return to the gas phase. The products are probed via infrared spectroscopy (reflection absorption infrared spectroscopy), and two types of mass spectroscopy protocols: temperature-programmed desorption, and during-exposure desorption techniques. In the case of the [CO+H] reactive system, we have found that chemical desorption of CO is more efficient than H-addition reactions and HCO and H2CO formation; the studies of the [H2CO +H] reactive system show a strong competition between all surface processes, chemical desorption of H2CO, H-addition (CH3OH formation) and H-abstraction (CO formation); finally, [CH3OH + H] seems to be a non-reactive system and chemical desorption of methanol is not efficient. CO-bearing species present a see-saw mechanism between CO and H2CO balanced by the competition of H-addition and H2-abstraction that enhances the CO chemical desorption. The chemical network leading to methanol has to be reconsidered. The methanol formation on the surface of interstellar dust grain is still possible through CO+H reaction; nevertheless, its consumption of adsorbed H atoms should be higher than previously expected.

  16. Phytotoxic activity and chemical composition of aqueous volatile fractions from Eucalyptus species.

    Directory of Open Access Journals (Sweden)

    Jinbiao Zhang

    Full Text Available The essential oils from four Eucalyptus species (E. spathulata, E. salubris, E. brockwayii and E. dundasii have been previously confirmed to have stronger inhibitory effects on germination and seedling growth of silverleaf nightshade (Solanum elaeagnifolium Cav.. The aqueous volatile fractions (AVFs were the water soluble volatile fractions produced together with the essential oils (water insoluble fractions during the steam distillation process. The aim of this study was to further assess the phytotoxicity of AVFs from the four Eucalyptus species and their chemical composition. The fresh leaves of the four Eucalyptus species were used for the extraction of AVFs. The AVFs were tested for their phytotoxic effects on the perennial weed, silverleaf nightshade under laboratory conditions. The chemical compositions of the AVFs were determined by gas chromatograph-mass spectrometry (GC-MS. Our results showed that the AVFs had strong inhibition on the germination and seedling growth of silverleaf nightshade. The inhibition index increased with the increasing concentrations of AVFs. The inhibitory effects of the AVFs varied between different Eucalyptus species. The AVF from E. salubris demonstrated the highest inhibitory activity on the weed tested, with complete inhibition on germination and seedling growth at a concentration of 75%. The GC-MS analysis revealed that 1,8-cineole, isopentyl isovalerate, isomenthol, pinocarvone, trans-pinocarveol, alpha-terpineol and globulol were the main compounds in the AVFs. These results indicated that all AVFs tested had differential inhibition on the germination and seedling growth of silverleaf nightshade, which could be due to the joint effects of compounds present in the AVFs as these compounds were present in different quantities and ratio between Eucalyptus species.

  17. Differential Sharing of Chemical Cues by Social Parasites Versus Social Mutualists in a Three-Species Symbiosis.

    Science.gov (United States)

    Emery, Virginia J; Tsutsui, Neil D

    2016-04-01

    Chemical recognition systems are crucial for maintaining the unity of social insect colonies. It has been proposed that colonies form a common chemical signature, called the gestalt odor, which is used to distinguish colony members and non-members. This chemical integration is achieved actively through social interactions such as trophallaxis and allogrooming, or passively such as through exposure to common nest material. When colonies are infiltrated by social parasites, the intruders often use some form of chemical mimicry. However, it is not always clear how this chemical mimicry is accomplished. Here, we used a three-species nesting symbiosis to test the differences in chemical integration of mutualistic (parabiotic) and parasitic ant species. We found that the parasite (Solenopsis picea) obtains chemical cues from both of the two parabiotic host ant species. However, the two parabiotic species (Crematogaster levior and Camponotus femoratus) maintain species-specific cues, and do not acquire compounds from the other species. Our findings suggest that there is a fundamental difference in how social mutualists and social parasites use chemicals to integrate themselves into colonies. PMID:27130488

  18. Polyphasic taxonomy of Aspergillus fumigatus and related species

    DEFF Research Database (Denmark)

    Hong, S.B.; Go, S.J.; Shin, H.D.; Frisvad, Jens Christian; Samson, R.A.

    2005-01-01

    the A. fumigatus sensu stricto species. A. lentulus including isolates from clinical origin, Korean soil and from a dolphin Clustered into an isolated group based on beta-tubulin, calmodulin and actin gene sequences, differing from A. fumigalus by morphological characters, growth temperature and...

  19. Models to relate species to environment: a hierarchical statistical approac

    NARCIS (Netherlands)

    Jamil, T.

    2012-01-01

    In the last two decades, the interest of community ecologists in trait-based approaches has grown dramatically and these approaches have been increasingly applied to explain and predict response of species to environmental conditions. A variety of modelling techniques are available. The dominant tec

  20. Acoustic wave detection of chemical species electrokinetically transported within a capillary tube.

    Science.gov (United States)

    Li, Paul C H; Prasad, Ronald

    2003-06-01

    For the first time, we report the acoustic wave detection of chemical species being transported in a capillary tube to a region where acoustic coupling occurs. The measured parameter was a change in phase, which was originally only attributed to a change in solution density as the analyte passed by the detection region. Accordingly, we report the detection of change in phase as various chemical species (e.g. Cy5 dye, Cy5-derivatized glycine and underivatized glycine) were introduced into and migrated along a capillary tube through electrokinetic processes. To improve detection sensitivity, we modified various experimental parameters, such as run buffer concentration, capillary wall thickness and transducer frequency. Although acoustic wave detection was feasible, the peak width and detection limit were inadequate as compared to conventional detection methods for HPLC or CE. Nevertheless, the effects of various physical and chemical relaxation processes on acoustic wave absorption were discussed, and this has shed some light on explaining some observations, which cannot be explained by density differences alone. Accordingly, the acoustic wave method is suggested to investigate these processes, as studied in ultrasonic relaxation spectroscopy, in a flow system. PMID:12866892

  1. Species interactions–area relationships: biological invasions and network structure in relation to island area

    OpenAIRE

    Sugiura, Shinji

    2010-01-01

    The relationship between species number and island area is a fundamental rule in ecology. However, the extent to which interactions with exotic species and how the structure of species interactions is related to island area remain unexplored. Here, I document the relationship between island area and (i) interactions with exotic species and (ii) network structure of species interactions in the context of mutualistic interactions between ants and extrafloral nectary-bearing plants on the oceani...

  2. Reactive oxygen species: their relation to pneumoconiosis and carcinogenesis

    OpenAIRE

    Vallyathan, V; Shi, X.; Castranova, V.

    1998-01-01

    Occupational exposures to mineral particles cause pneumoconiosis and other diseases, including cancer. Recent studies have suggested that reactive oxygen species (ROS) may play a key role in the mechanisms of disease initiation and progression following exposure to these particles. ROS-induced primary stimuli result in the increased secretion of proinflammatory cytokines and other mediators, promoting events that appear to be important in the progression of cell injury and pulmonary disease. ...

  3. Bryophyllum pinnatum and Related Species Used in Anthroposophic Medicine: Constituents, Pharmacological Activities, and Clinical Efficacy.

    Science.gov (United States)

    Fürer, Karin; Simões-Wüst, Ana Paula; von Mandach, Ursula; Hamburger, Matthias; Potterat, Olivier

    2016-07-01

    Bryophyllum pinnatum (syn. Kalanchoe pinnata) is a succulent perennial plant native to Madagascar that was introduced in anthroposophic medicine in the early 20th century. In recent years, we conducted a large collaborative project to provide reliable data on the chemical composition, pharmacological properties, and clinical efficacy of Bryophyllum. Here, we comprehensively review the phytochemistry, as well as the pharmacological and clinical data. As to the pharmacology, special emphasis is given to properties related to the use in anthroposophic medicine as a treatment for "hyperactivity diseases", such as preterm labor, restlessness, and sleep disorders. Studies suggesting that B. pinnatum may become a new treatment option for overactive bladder syndrome are also reviewed. Tolerability is addressed, and toxicological data are discussed in conjunction with the presence of potentially toxic bufadienolides in Bryophyllum species. The few data available on two related species with medicinal uses, Bryophyllum daigremontianum and Bryophyllum delagoense, have also been included. Taken together, current data support the use of B. pinnatum for the mentioned indications, but further studies are needed to fully understand the modes of action, and to identify the pharmacologically active constituents. PMID:27220081

  4. Characterization of homoionic Fe2+-type montmorillonite: Potential chemical species of iron contaminant

    International Nuclear Information System (INIS)

    Fe2+-montmorillonite with Fe2+ ions occupying cation exchange sites is an ideal transformation product in bentonite buffer material. In our previous study on preparation and characterization of Fe2+-montmorillonite, the montmorillonite sample that adsorbed Fe2+ ions on almost all of the cation exchange sites was prepared using a FeCl2 solution under an inert gas condition [N. Kozai, Y. Adachi, S. Kawamura, K. Inada, T. Kozaki, S. Sato, H. Ohashi, T. Ohnuki, T. Banba, J. Nucl. Sci. Technol. 38 (2001) 1141]. In view of the unstable nature of iron(II) chemical species, this study attempted to determine the potential contaminant iron chemical species in the sample. Nondestructive elemental analysis revealed that a small amount of chloride ions remained dispersed throughout the clay particles. The chloride ion retention may be due to the adsorption of FeCl+ ion pairs in the initial FeCl2 solution and the subsequent containment of the Cl- ions that are dissociated from the FeCl+ ion pairs during excess salt removal treatment. Two explanations are advanced for the second process: the slow release of the remaining Cl- ions from the collapsed interlayer of the montmorillonite, and the transformation of a minor fraction of the remaining FeCl+ ion pairs to iron(III) hydroxide chloride complexes having low solubility. - Graphical abstract: The distribution of Si (left) and Cl (right) in homoionic Fe2+-type montmorillonite prepared under an inert gas atmosphere by a conventional method using a FeCl2 solution. A small fraction of chloride ions remained dispersed throughout the clay. This paper mainly discusses the potential contaminant iron chemical species in this sample other than Fe2+ ions

  5. Comparison of the physico-chemical and phytochemical characteristics of the oil of two Plukenetia species.

    Science.gov (United States)

    Chirinos, Rosana; Pedreschi, Romina; Domínguez, Gilberto; Campos, David

    2015-04-15

    A physico-chemical and phytochemical characterisation of the oil of two rich sources of polyunsaturated fatty acids, tocopherols and phytosterols is presented for two close species of Plukenetia, endemic to the Amazon Region of Peru. Plukenetia huayllabambana presented approximately 9% more oil yield than Plukenetia volubilis. Fatty acid profiles were pretty similar for both species but P. huayllabambana presented a significantly higher content of α-linolenic acid than P. volubilis (51.3 and 45.6 g/100 g oil, respectively). Important contents of γ- and δ-tocopherol were evidenced in both oils (127.6 and 84.0 and, 93.3 and 47.5 mg/100 g oil, for P. volubilis and P. huayllabambana, respectively). β-Sitosterol was the most important and representative phytosterol in both oils (∼127 mg/100 g oil). The results of this study indicate P. huayllabambana as an important dietary source of health promoting phytochemicals. PMID:25466144

  6. Vaporization of chemical species and the production of aerosols during a core debris/concrete interaction

    International Nuclear Information System (INIS)

    The equilibrium chemical composition within gas bubbles sparging through isothermal molten corium-concrete mixtures has been evaluated theoretically. A series of sensitivity calculations gives some insight into a number of factors which are of importance in determining the radionuclide and non-radioactive releases during core-concrete interaction. The degree of mixing or layering of the pool has turned out to be of paramount importance in determining the magnitudes of the releases. The presence of unoxidized zirconium in the melt tends to enhance the release of a number of species and the type of concrete used for the base mat can have a significant effect. The predictions can be sensitive to the thermodynamic data used in the calculations. The vaporization of various species into the gas bubbles can require large amounts of heat; the loss of this heat from the melt can have an effect on the extent of the vaporization

  7. Status of chemical elements in Atlantic Forest tree species near an industrial complex

    International Nuclear Information System (INIS)

    Environmental quality assessment studies have been conducted with tree species largely distributed in the Atlantic Forest. Leaf and soil samples were collected in the conservation unit Parque Estadual da Serra do Mar (PESM) nearby the industrial complex of Cubatao, Sao Paulo State, Brazil, and analyzed for chemical elements by instrumental neutron activation analysis. Results were compared to background values obtained in the Parque Estadual Carlos Botelho (PECB). The higher As, Fe, Hg and Zn mass fractions in the tree leaves of PESM indicated anthropogenic influence on this conservation unit. (author)

  8. Chemical sanitizers to control biofilms formed by two Pseudomonas species on stainless steel surface

    OpenAIRE

    Danila Soares Caixeta; Thiago Henrique Scarpa; Danilo Florisvaldo Brugnera; Dieyckson Osvani Freire; Eduardo Alves; Luiz Ronaldo de Abreu; Roberta Hilsdorf Piccoli

    2012-01-01

    The biofilm formation of Pseudomonas aeruginosa and Pseudomonas fluorescens on AISI 304 stainless steel in the presence of reconstituted skim milk under different temperatures was conducted, and the potential of three chemical sanitizers in removing the mono-species biofilms formed was compared. Pseudomonas aeruginosa cultivated in skim milk at 28 °C presented better growth rate (10.4 log CFU.mL-1) when compared with 3.7 and 4.2 log CFU.mL-1 for P. aeruginosa and P. fluorescens cultivated at ...

  9. Model analysis of the chemical conversion of exhaust species in the expanding plumes of subsonic aircraft

    Energy Technology Data Exchange (ETDEWEB)

    Moellhoff, M.; Hendricks, J.; Lippert, E.; Petry, H. [Koeln Univ. (Germany). Inst. fuer Geophysik und Meteorologie; Sausen, R. [Deutsche Forschungsanstalt fuer Luft- und Raumfahrt e.V. (DLR), Oberpfaffenhofen (Germany). Inst. fuer Physik der Atmosphaere

    1997-12-31

    A box model and two different one-dimensional models are used to investigate the chemical conversion of exhaust species in the dispersing plume of a subsonic aircraft flying at cruise altitude. The effect of varying daytime of release as well as the impact of changing dispersion time is studied with special respect to the aircraft induced O{sub 3} production. Effective emission amounts for consideration in mesoscale and global models are calculated. Simulations with modified photolysis rates are performed to show the sensitivity of the photochemistry to the occurrence of cirrus clouds. (author) 8 refs.

  10. Plant Species Rather Than Climate Greatly Alters the Temporal Pattern of Litter Chemical Composition During Long-Term Decomposition

    Science.gov (United States)

    Li, Yongfu; Chen, Na; Harmon, Mark E.; Li, Yuan; Cao, Xiaoyan; Chappell, Mark A.; Mao, Jingdong

    2015-10-01

    A feedback between decomposition and litter chemical composition occurs with decomposition altering composition that in turn influences the decomposition rate. Elucidating the temporal pattern of chemical composition is vital to understand this feedback, but the effects of plant species and climate on chemical changes remain poorly understood, especially over multiple years. In a 10-year decomposition experiment with litter of four species (Acer saccharum, Drypetes glauca, Pinus resinosa, and Thuja plicata) from four sites that range from the arctic to tropics, we determined the abundance of 11 litter chemical constituents that were grouped into waxes, carbohydrates, lignin/tannins, and proteins/peptides using advanced 13C solid-state NMR techniques. Decomposition generally led to an enrichment of waxes and a depletion of carbohydrates, whereas the changes of other chemical constituents were inconsistent. Inconsistent convergence in chemical compositions during decomposition was observed among different litter species across a range of site conditions, whereas one litter species converged under different climate conditions. Our data clearly demonstrate that plant species rather than climate greatly alters the temporal pattern of litter chemical composition, suggesting the decomposition-chemistry feedback varies among different plant species.

  11. Comparison of the chemical compositions and nutritive values of various pumpkin (Cucurbitaceae) species and parts.

    Science.gov (United States)

    Kim, Mi Young; Kim, Eun Jin; Kim, Young-Nam; Choi, Changsun; Lee, Bog-Hieu

    2012-02-01

    Pumpkins have considerable variation in nutrient contents depending on the cultivation environment, species, or part. In this study, the general chemical compositions and some bioactive components, such as tocopherols, carotenoids, and β-sitosterol, were analyzed in three major species of pumpkin (Cucurbitaceae pepo, C. moschata, and C. maxima) grown in Korea and also in three parts (peel, flesh, and seed) of each pumpkin species. C. maxima had significantly more carbohydrate, protein, fat, and fiber than C. pepo or C. moschata (P pumpkin was highest in C. pepo. The major fatty acids in the seeds were palmitic, stearic, oleic, and linoleic acids. C. pepo and C. moschata seeds had significantly more γ-tocopherol than C. maxima, whose seeds had the highest β-carotene content. C. pepo seeds had significantly more β-sitosterol than the others. Nutrient compositions differed considerably among the pumpkin species and parts. These results will be useful in updating the nutrient compositions of pumpkin in the Korean food composition database. Additional analyses of various pumpkins grown in different years and in different areas of Korea are needed. PMID:22413037

  12. Chemical espionage on species-specific butterfly anti-aphrodisiacs by hitchhiking Trichogramma wasps

    NARCIS (Netherlands)

    Huigens, M.E.; Woelke, J.B.; Pashalidou, F.G.; Bukovinszky, T.; Smid, H.M.; Fatouros, N.E.

    2010-01-01

    Parasitic wasps employ a wide range of chemical cues to find their hosts. Very recently, we discovered how 2 closely related egg parasitoids, Trichogramma brassicae and Trichogramma evanescens, exploit the anti-aphrodisiac pheromone benzyl cyanide of one of their hosts, the gregarious large cabbage

  13. Entrainment in an electrochemical forced oscillator as a method of classification of chemical species-a new strategy to develop a chemical sensor

    Science.gov (United States)

    Nakata, S.; Yoshikawa, K.; Kawakami, H.

    1992-10-01

    We propose a new sensing method of varios chemical species based on information on the mode of entrainment in an electrochemically forced oscillator. It is demonstrated that the presence of one of the four basic taste compounds (salty, sweet, bitter, and sour) changes the mode of entrainment in a unique way. Thus a characteristics change of the entrainment allows us to obtain information on the properties of the electrochemical system. The response of the mode of entrainment to the taste compounds is related to the nonlinear properties of the studied electrochemical system, i.e., its voltage dependent capacitance and conductance. The experimental results are compared with computer simulations of a model system in which the capacitance is a nonlinear function of the voltage.

  14. Two new species of Dicranomyia Stephens, 1829, with notes on related species (Diptera, Limoniidae)

    NARCIS (Netherlands)

    Geiger, Willy

    1985-01-01

    Dicranomyia (D.) lorettae sp.n. and Dicranomyia (D.) mattheyi sp.n. are described. Comments are given on the relationship of the new species and the chorea group sensu Lackschewitz & Pagast, 1941. The synonymy of Dicranomyia hygropetrica Vaillant, 1952, and Dicranomyia mitis (Meigen, 1830) is establ

  15. Animal Related Activities as Determinants of Species Knowledge

    Science.gov (United States)

    Randler, Christoph

    2010-01-01

    Previous work has established a relationship between knowledge and environmental concern. Different factors may contribute to this knowledge and animal-related leisure activities may also contribute to this knowledge. 390 participants in Leipzig, Germany were interviewed to assess their animal-related leisure activities, their demographic status…

  16. Chemical Processes Related to Combustion in Fluidised Bed

    Energy Technology Data Exchange (ETDEWEB)

    Steenari, Britt-Marie; Lindqvist, Oliver [Chalmers Univ. of Technology, Goeteborg (Sweden). Dept. of Environmental Inorganic Chemistry

    2002-12-01

    with evaluation of other biomass ash particles and, as an extension, the speciation of Cu and Zn will be studied as well. Ash fractions from combustion of MSW in a BFB boiler have been investigated regarding composition and leaching properties, i.e. environmental impact risks. The release of salts from the cyclone ash fraction can be minimised by the application of a simple washing process, thus securing that the leaching of soluble substances stays within the regulative limits. The MSW ash - water systems contain some interesting chemical issues, such as the interactions between Cr(VI) and reducing substances like Al-metal. The understanding of such chemical processes is important since it gives a possibility to predict effects of a change in ash composition. An even more detailed understanding of interactions between a solution containing ions and particle surfaces can be gained by theoretical modelling. In this project (and with additional unding from Aangpannefoereningens Forskningsstiftelse) a theoretical description of ion-ion interactions and the solid-liquid-interface has been developed. Some related issues are also included in this report. The publication of a paper on the reactions of ammonia in the presence of a calcining limestone surface is one of them. A review paper on the influence of combustion conditions on the properties of fly ash and its applicability as a cement replacement in concrete is another. The licentiate thesis describing the sampling and measurement of Cd in flue gas is also included since it was finalised during the present period. A co-operation project involving the Geology Dept. at Goeteborg Univ. and our group is briefly discussed. This project concerns the utilisation of granules produced from wood ash and dolomite as nutrient source for forest soil. Finally, the plans for our flue gas simulator facility are discussed.

  17. Effects of Pig Slurry Application and Crops on Phosphorus Content in Soil and the Chemical Species in Solution

    OpenAIRE

    2015-01-01

    The application of pig slurry rates and plant cultivation can modify the soil phosphorus (P) content and distribution of chemical species in solution. The purpose of this study was to evaluate the total P, available P and P in solution, and the distribution of chemical P species in solution, in a soil under longstanding pig slurry applications and crop cultivation. The study was carried out in soil columns with undisturbed structure, collected in an experiment conducted for eight years in the...

  18. Contribution of species-specific chemical signatures to soil organic matter in Kohala, HI.

    Science.gov (United States)

    Stewart, C. E.; Amatangelo, K.; Neff, J. C.

    2008-12-01

    Soil organic matter (SOM) inherits much of its chemical structure from the dominant vegetation, including phenolic (lignin-derived), aromatic, and aliphatic (cutin and wax-derived) compounds. The Hawaiian fern species Dicranopteris decomposes more slowly than the angiosperm, Cheirodendron due to high concentrations of recalcitrant C compounds. These aliphatic fern leaf waxes are well-preserved and may comprise a large portion of the recalcitrant organic matter in these soils. Our objective was to determine the chemical signature of fern and angiosperm vegetation types and trace the preservation or loss of those compounds into the soil. We collected live tissue, litter, roots, and soil (tannin-derivatives. There was a general decrease of lignin-derived phenolic compounds from live to litter to soils and an increase in more recalcitrant, aromatic and aliphatic C. Recalcitrant fern-derived cutin and leaf waxes (alkene and alkanes structures) were evident in the soils, but clear species differences were not observed. Although ferns contain distinct lipid and wax-derived compounds, soils developed under fern do not appear to accumulate these compounds in SOM.

  19. Vibrational Spectroscopy of Chemical Species in Silicon and Silicon-Rich Nitride Thin Films

    Directory of Open Access Journals (Sweden)

    Kirill O. Bugaev

    2012-01-01

    Full Text Available Vibrational properties of hydrogenated silicon-rich nitride (SiN:H of various stoichiometry (0.6≤≤1.3 and hydrogenated amorphous silicon (a-Si:H films were studied using Raman spectroscopy and Fourier transform infrared spectroscopy. Furnace annealing during 5 hours in Ar ambient at 1130∘C and pulse laser annealing were applied to modify the structure of films. Surprisingly, after annealing with such high-thermal budget, according to the FTIR data, the nearly stoichiometric silicon nitride film contains hydrogen in the form of Si–H bonds. From analysis of the FTIR data of the Si–N bond vibrations, one can conclude that silicon nitride is partly crystallized. According to the Raman data a-Si:H films with hydrogen concentration 15% and lower contain mainly Si–H chemical species, and films with hydrogen concentration 30–35% contain mainly Si–H2 chemical species. Nanosecond pulse laser treatments lead to crystallization of the films and its dehydrogenization.

  20. Study of Chemical Constituents and Medicinal Uses of Indicator Species of District Bannu

    Directory of Open Access Journals (Sweden)

    Rehman ullah khan

    2013-06-01

    Full Text Available The present study was carried out to assess record and report the chemical constituents and ethnobotanical knowledge of indicator species of District Bannu. Medicinal outlines of about 57 plants were recorded through interview local people i.e. farmers, herbalists, hakims and Medicinal plants user dealers. The present investigation comprises the indigenous uses of 57 species belonging to 36 families of Angiosperms based upon their utility. Out of this rich Medicinal germplasm, 66.15% plants are wild while 44.18%, species were found to be cultivated, 26.74% species are both wild and cultivated of the total flora of this area. The most important medicinal families are Solanaceae (7 spp, 12.28%, Asteraceae (5 spp, 8.77%, Mimosaceae (3 spp, 5.26%, Moraceae (3 spp, 5.26%, Malvaceae, Amaranthaceae, Chenopodiaceae, Euphorbiaceae, Papilionaceae, Plantaginaceae, and Rhamnaceae (2 spp, 3.51% While the remaining 25 families having 1 species each which is 1.75% of all families. The most common medicinal plants in the area are Abroma augusta (L. F., Acacia modesta wall., Achyranthes bidentata Blume , Albizia lebbeek L., Calotropis procera L., Capparis decidua Forsk Carthamus oxycantha M. B, Chenopodium album L., Citrus medica L., Citrullus colocynthis Schrad, Cuscuta reflexa Roxb, Cynodon dactylon L. Cyperus rotundrus L., Dodonia viscosa L., Eucalyptus globule L., Nerium oleander L., Papaver somniferum L., Trachy spermum ammi L. Typha orientallis J. Preslw., Vitex negundo L., Withania somnifera L., Xanthium strumarium L., Zizphus mauratiana Lam., Some plants have wild fruits i.e.., Solanum nigrum L., while Nerium oleander L. and Dodonaea viscosa (L. Jaeq are ornamental.

  1. Genetic studies of medfly populations and related species

    International Nuclear Information System (INIS)

    Multilocus enzyme electrophoresis (MLEE) and random amplified polymorphic DNA were used to detect genetic markers in Ceratitis capitata. The authors employed both types of markers (1) to study the genome organization of the medfly, (2) to determine the level of intraspecific genetic diversity, and (3) to understand the evolution of the geographical populations. Sterility and high mutation rates in interstrain crosses were observed in C. capitata, reminiscent of hybrid dysgenesis in Drosophila, and may represent the activation of mobile elements, useful for medfly transformation. The biochemical, genetic and molecular characterization of the enzyme alcohol dehydrogenase clarified the peculiarity of this selectable system, compared with that of Drosophila, and revealed a surprisingly high sequence variability in medfly populations. The phylogenetic relationships between C. capitata and other Tephritidae species of economic importance were analysed by the MLEE approach. (author)

  2. Co-occurrence patterns of Bornean vertebrates suggest competitive exclusion is strongest among distantly related species.

    Science.gov (United States)

    Beaudrot, Lydia; Struebig, Matthew J; Meijaard, Erik; van Balen, S; Husson, Simon; Marshall, Andrew J

    2013-11-01

    Assessing the importance of deterministic processes in structuring ecological communities is a central focus of community ecology. Typically, community ecologists study a single taxonomic group, which precludes detection of potentially important biotic interactions between distantly related species, and inherently assumes competition is strongest between closely related species. We examined distribution patterns of vertebrate species across the island of Borneo in Southeast Asia to assess the extent to which inter-specific competition may have shaped ecological communities on the island and whether the intensity of inter-specific competition in present-day communities varies as a function of evolutionary relatedness. We investigated the relative extent of competition within and between species of primates, birds, bats and squirrels using species presence-absence and attribute data compiled for 21 forested sites across Borneo. We calculated for each species pair the checkerboard unit value (CU), a statistic that is often interpreted as indicating the importance of interspecific competition. The percentage of species pairs with significant CUs was lowest in within-taxon comparisons. Moreover, for invertebrate-eating species the percentage of significantly checkerboarded species pairs was highest in comparisons between primates and other taxa, particularly birds and squirrels. Our results are consistent with the interpretation that competitive interactions between distantly related species may have shaped the distribution of species and thus the composition of Bornean vertebrate communities. This research highlights the importance of taking into account the broad mammalian and avian communities in which species occur for understanding the factors that structure biodiversity. PMID:23736548

  3. Number of endemic and native plant species in the Galapagos Archipelago in relation to geographical parameters

    DEFF Research Database (Denmark)

    Willerslev, Eske; Hansen, Anders J.; Nielsen, Kirstine Klitgaard;

    2002-01-01

    By simple and multiple regression analyses we investigate updated species numbers of endemic and native vascular plants and seed plants in the Galapagos Archipelago in relation to geographical parameters. We find that the best models to describe species numbers are regression models with log......-transformed species numbers as dependent and log-transformed modified area (i.e. area not covered with barren lava) as an independent variable. This holds both for total species number, for native species number, for endemic species number and for total number of seed plants as well as number of endemic seed plants...

  4. An update review on Commiphora molmol and related species.

    Science.gov (United States)

    Tonkal, Abdulkader M D; Morsy, Tosson A

    2008-12-01

    The origins of myrrh and frankincense are traced to the Arabian Peninsula. According to Herodotus (5th century BC): "Arabia is the only country which produces frankincense, myrrh, cassia, and cinnamon.., the trees bearing the frankincense are guarded by winged serpents of small size and various colors." Diodorus Siculus wrote, in the second half of the first century BC, that "all of Arabia exudes a most delicate fragrance; even the seamen passing by Arabia can smell the strong fragrance that gives health and vigor." He also mentioned gold mines so pure that no smelting was necessary. The Magi, carrying myrrh, frankincense, and gold, came from the East: Arabia. The frankincense trade route, with transport by donkeys and later by camel caravans, reached Jerusalem and Egypt from the Dhofar region of what is today Oman, through Yemen, turning north to follow the Red Sea coast. It is likely that the same or similar species of the resin-bearing plants grew across the Red Sea in the area that is now Somalia and Ethiopia, while the collection of the gum resins was initiated in Arabia. Myrrh contributed much in the human welfare. Schistosomiasis was known in ancient Egypt since remote times. Haematuria with urinary bladder disturbances was mentioned in four Papyrus papers dated back to 1950-1900 BC, and Schistosoma ova was detected in a cirrhotic liver of a mummy from 1200 BC (Ruffer, 1910). Also, Fasciola eggs were detected in a mummy (Looss, 1896). Fascioliasis infected over 17 million people worldwide causing marked morbidity and mortality (Haseeb et al., 2002). Schistosomiasis affected over 200 million people in 74 countries and territories worldwide (WHO, 1999) causing several chronic complications. Both were incriminated to predispose or accompanied human hepatitis and predisposed to HCV (Wahib et al., 2006). Most zoonotic helminthes induced immune response (Nutman, 2001) characterized by producing of type 2 cytokines, Ig G1, IgG2, IgE antibodies and eosinophil and

  5. Species interactions and chemical stress combined effects of intraspecific and interspecific interactions and pyrene n Daphnia magna populations dynamics

    NARCIS (Netherlands)

    Viaene, K.P.J.; Laender, de F.; Rico, A.; Brink, van den P.J.; Guardo, Di A.; Morselli, M.; Janssen, C.R.

    2015-01-01

    Species interactions are often suggested as an important factor when assessing the effects of chemicals on higher levels of biological organization. Nevertheless, the contribution of intraspecific and interspecific interactions to chemical effects on populations is often overlooked. In the present s

  6. [Chemical tests with Marrubium species. Official data on Marubii herba in Pharmacopoeia Hungarica VII].

    Science.gov (United States)

    Telek, E; Tõth, L; Botz, L; Máthé, I

    1997-01-01

    About 40 species of the Marrubium genus (Lamiaceae) are known of which 2 species (M. vulgare L. and M. peregrinum L.) and one hybrid (M. x paniculatum Desr.) can be found as native plants in Hungary. The above-ground parts of M. vulgare L. are official in Hungarian Pharmacopoeia VII. Active substances in Marrubii herba are labdane-structured bitter materials. Although the presence of furanic labdane diterpenes in the plant is known, the pharmacopoeia gives only microscopic tests, qualitative tests (for other parts of the plant and foreign organic matter) for the bitter value of Marrubii herba. We have examined the main terpenoid substances isolated with column, gel and preparative layer chromatography. Structure elucidations were performed by means of UV, mass and NMR spectroscopy. We have compared the changes in terpenoid-type compounds (premarrubiin and marrubiin) in plants during the vegetation period; in different Marrubium species and in the different extractions of horehound by means of thin layer chromatography and densitometry. By reason of our results we propose qualitative and quantitative chemical tests for the paragraph of Marrubii herba in Pharmacopoeia Hungarica VII. PMID:9163258

  7. The effect of elevated CO2 on the chemical composition and construction costs of leaves of 27 C-3 species

    NARCIS (Netherlands)

    Poorter, H; VanBerkel, Y; Baxter, R; DenHertog, J; Dijkstra, P; Gifford, RM; Griffin, KL; Roumet, C; Roy, J

    1997-01-01

    We determined the proximate chemical composition as well as the construction costs of leaves of 27 species, grown at ambient and at a twice-ambient partial pressure of atmospheric CO2, These species comprised wild and agricultural herbaceous plants as well as tree seedlings, Both average responses a

  8. Environmental Fate of Organophosphorus Compounds Related to Chemical Weapons

    Energy Technology Data Exchange (ETDEWEB)

    Davisson, M L; Love, A H; Vance, A; Reynolds, J G

    2005-02-08

    chloride and hydroxyl (strong nucleophile) dominated experimental solutions. Because of its overwhelming abundance in solution relative to hydroxyl ion, bicarbonate likely effectively competes in nucleophilic attack on phosphorus. The addition of natural dissolved organic matter at 100 mg/L in pH 7 bicarbonate buffered solution slowed VX hydrolysis rates {approx}2 times relative to controls, suggesting hydrophobic interaction. Adsorption experiments derived isotherms from batch aqueous experiments on montmorillonite clay, iron-oxyhydroxide goethite, and on amorphous silica. VX had moderate affinity for montmorillonite and amorphous silica, and very low affinity toward goethite. The addition of dissolved organic matter into solution enhanced VX adsorption to goethite, consistent with its high affinity for hydrophobic organic matter (log K{sub oc} = 2.52). Diisopropylaminoethylthiol (DESH), a hydrolysis product of VX showed equivalent adsorption to montmorillonite, and poor affinity to goethite and silica. However, hydrolysis products O-Ethylmethylphosphonic acid (EMPA) and methylphosphonic acid (MPA) strongly adsorbed on goethite, but not on montmorillonite or silica, suggesting a ligand-exchange mechanism. VX degraded rapidly when completely dried onto goethite followed by rehydration, consistent with an irreversible chemical adsorption mechanism.

  9. Relative hazard of radioactive contamination and chemical pollution of pools

    International Nuclear Information System (INIS)

    Tests have been performed to study the danger of radioactive and chemical water pollution when the current standards of maximum permissible concentrations of chemical substances and average annual permissible concentrations (AAPC) of radionuclides are equally exceeded. Model water reservoirs and water organisms were used to study the effect of 16 various radioactive and chemical substances: mercury methyl and mercury bichloride, pesticides, 226Ra, 137Cs, 89Sr, 60Co, 65Zn, 210Pb, 210Po. The results of these studies showed that the safety factor for AAPC of radionuclides (up to damaging effect) is 1000-10000 times greater than PMC of chemical substances. Considering that the standards of the radionuclides studied for all the population (AAPCp) are 3-10 times lower than for separate groups, their minimum affecting concentrations prove to be equal to 105-106 AAPCp, while the differences in the safety factors of the standards for radionuclides and chemical substances in affecting water and water organisms will amount to a factor of 104-105

  10. Efficiency of generation of chemically active species by pulsed corona discharges

    International Nuclear Information System (INIS)

    G-values for the production of chemically active species by pulsed corona discharges are estimated within the framework of analytical streamer theory. Estimates for the production of oxygen and nitrogen atoms in the heads of propagating streamers are compared with recent experimental results obtained with the use of very short current pulses of duration of several nanoseconds. Production of oxygen and nitrogen atoms for long current pulses, of duration of several hundred nanoseconds, at a stage after bridging the discharge gap by a streamer is also considered. It is shown that, while oxygen atoms are produced during the discharge, generation of nitrogen atoms takes place mainly after the discharge, in collisions between vibrationally excited nitrogen molecules. (fast track communication)

  11. Chemical composition of the essential oil from Croton kimosorum, an endemic species to Madagascar.

    Science.gov (United States)

    Rabehaja, Delphin J R; Ihandriharison, Harilala; Ramanoelina, Panja A R; Benja, Rakotonirina; Ratsimamanga-Urverg, Suzanne; Bighelli, Ange; Casanova, Joseph; Tomi, Félix

    2014-01-01

    Croton kimosorum Leandri is an endemic species to Madagascar. The chemical composition of aerial parts, leaf and stem oils is reported for the first time. Analysis was carried out by combination of chromatographic (CC, GC), spectroscopic and spectrometric (MS, 13C NMR) techniques. In total, 76 compounds have been identified. Essential oil isolated from aerial parts contained mainly linalool (21.6%), sabinene (10.4%), 1,8-cineole (6.3%), beta-pinene (6.2%), (E)-beta-caryophyllene (5.9%), terpinen-4-ol (4.8%), geraniol (4,5%) and germacrene D (2.3%). In comparison with the first sample, the composition of leaf and stem oils varied slightly, while essential oil isolated by vapor distillation from a semi-industrial still exhibited similar composition. PMID:24660481

  12. Parent type chemical species formed by recoil implantation reaction in tris(β-diketonato)metal(III)

    International Nuclear Information System (INIS)

    Chemical reactions induced by recoil implantation were studied focussing on parent type species in tris(β-diketonato)metal(III) complexes. The yield of the substitution reaction *M + M(acac)3 → *M(acac)3 + M was dependent on the force constant ratio K(*M-O)/K(M-O), showing that competition occurred between *M and M in the cage of the acetylacetonate complex. In the case of *Cr implantation in Co(acac)3, an exceptionally large yield could be explained by formation of Co(acac)2, whose central metal easily exchanges with *Cr, and by pickup of acac. When different β-diketonate complexes were examined in the reaction *Cr + M(β-dik)3 → *Cr(β-dik)3 + M the yield was dependent on the stability of the M(β-dik)3 complexes. A reaction model to explain these results reasonably was presented. (orig.)

  13. Chemical-specific adjustment factors (inter-species toxicokinetics) to establish the ADI for steviol glycosides.

    Science.gov (United States)

    Roberts, Ashley; Lynch, Barry; Rogerson, Rebecca; Renwick, Andrew; Kern, Hua; Coffee, Matthew; Cuellar-Kingston, Nicole; Eapen, Alex; Crincoli, Christine; Pugh, George; Bhusari, Sachin; Purkayastha, Sidd; Carakostas, Michael

    2016-08-01

    The acceptable daily intake (ADI) of commercially available steviol glycosides is currently 0-4 mg/kg body weight (bw)/day, based on application of a 100-fold uncertainty factor to a no-observed-adverse-effect-level value from a chronic rat study. Within the 100-fold uncertainty factor is a 10-fold uncertainty factor to account for inter-species differences in toxicokinetics (4-fold) and toxicodynamics (2.5-fold). Single dose pharmacokinetics of stevioside were studied in rats (40 and 1000 mg/kg bw) and in male human subjects (40 mg/kg bw) to generate a chemical-specific, inter-species toxicokinetic adjustment factor. Tmax values for steviol were at ∼8 and ∼20 h after administration in rats and humans, respectively. Peak concentrations of steviol were similar in rats and humans, while steviol glucuronide concentrations were significantly higher in humans. Glucuronidation in rats was not saturated over the dose range 40-1000 mg/kg bw. The AUC0-last for steviol was approximately 2.8-fold greater in humans compared to rats. Chemical-specific adjustment factors for extrapolating toxicokinetics from rat to human of 1 and 2.8 were established based on Cmax and AUC0-last data respectively. Because these factors are lower than the default value of 4.0, a higher ADI for steviol glycosides of between 6 and 16 mg/kg bw/d is justified. PMID:27181453

  14. Chemical Species and Content Analysis of 125I in Bok-choy and Ipomoea Aquatica Forsk

    International Nuclear Information System (INIS)

    Iodine has been long known as an indispensable element in the synthesis of thyroid hormones. Severe iodine deficiency in diet leads to iodine deficiency disorders in humans. An isotope tracer experiment was carried out to study the chemical species and content analysis of 125I absorbed by the Bok-choy and Ipomoea Aquatica Forsk. The results showed that inorganic 125I, organic 125I and residual 125I have been detected in Bok-choy and Ipomoea Aquatica Forsk. In Bok-choy,the inorganic 125I content is the most which up to 42.48%, and except for residual 125I the organic 125I content is taken up to 7.91%. But in Ipomoea Aquatica Forsk, the content of 125I ranks as residual 125I > the inorganic 125I > organic 125I followed by 64.97%, 28.36% and 6.66%. The consists of inorganic 125I is I-, IO3-and I2 in both Bok-choy and Ipomoea Aquatica Forsk, and I-is the main chemical species. The protein-125I was the main form of organic iodine which respectively amounts to 22.43% and 8.68% of total iodine, the content of amylose-125I was the least which was 0.78% and 0.40% in both Bok-choy and Ipomoea Aquatica Forsk, and the content of the nucleic acid-125I is between them. The results showed that Bok-choy and Ipomoea Aquatica Forsk can enriched Iodine in environment. so, they could be cultivated as iodine vegetable. (authors)

  15. Toxicity of proton-metal mixtures in the field: Linking stream macroinvertebrate species diversity to chemical speciation and bioavailability

    International Nuclear Information System (INIS)

    Understanding metal and proton toxicity under field conditions requires consideration of the complex nature of chemicals in mixtures. Here, we demonstrate a novel method that relates streamwater concentrations of cationic metallic species and protons to a field ecological index of biodiversity. The model WHAM-FTOX postulates that cation binding sites of aquatic macroinvertebrates can be represented by the functional groups of natural organic matter (humic acid), as described by the Windermere Humic Aqueous Model (WHAM6), and supporting field evidence is presented. We define a toxicity function (FTOX) by summing the products: (amount of invertebrate-bound cation) x (cation-specific toxicity coefficient, αi). Species richness data for Ephemeroptera, Plecoptera and Trichoptera (EPT), are then described with a lower threshold of FTOX, below which all organisms are present and toxic effects are absent, and an upper threshold above which organisms are absent. Between the thresholds the number of species declines linearly with FTOX. We parameterised the model with chemistry and EPT data for low-order streamwaters affected by acid deposition and/or abandoned mines, representing a total of 412 sites across three continents. The fitting made use of quantile regression, to take into account reduced species richness caused by (unknown) factors other than cation toxicity. Parameters were derived for the four most common or abundant cations, with values of αi following the sequence (increasing toxicity) H+ + and Al, FTOX shows a steady decline with increasing pH, crossing the lower threshold near to pH 7. Competition effects among cations mean that toxicity due to Cu and Zn is rare at lower pH values, and occurs mostly between pH 6 and 8.

  16. Toxicity of proton-metal mixtures in the field: Linking stream macroinvertebrate species diversity to chemical speciation and bioavailability

    Energy Technology Data Exchange (ETDEWEB)

    Stockdale, Anthony [Centre for Ecology and Hydrology, Lancaster Environment Centre, Library Avenue, Bailrigg, Lancaster LA1 4AP (United Kingdom); Tipping, Edward, E-mail: et@ceh.ac.uk [Centre for Ecology and Hydrology, Lancaster Environment Centre, Library Avenue, Bailrigg, Lancaster LA1 4AP (United Kingdom); Lofts, Stephen [Centre for Ecology and Hydrology, Lancaster Environment Centre, Library Avenue, Bailrigg, Lancaster LA1 4AP (United Kingdom); Ormerod, Stephen J. [Catchment Research Group, Cardiff School of Biosciences, Cardiff University, Cardiff CF10 3US (United Kingdom); Clements, William H. [Department of Fish, Wildlife, and Conservation Biology, Colorado State University, Fort Collins, CO 80523 (United States); Blust, Ronny [Ecophysiology, Biochemistry and Toxicology Group, Department of Biology, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp (Belgium)

    2010-10-01

    Understanding metal and proton toxicity under field conditions requires consideration of the complex nature of chemicals in mixtures. Here, we demonstrate a novel method that relates streamwater concentrations of cationic metallic species and protons to a field ecological index of biodiversity. The model WHAM-F{sub TOX} postulates that cation binding sites of aquatic macroinvertebrates can be represented by the functional groups of natural organic matter (humic acid), as described by the Windermere Humic Aqueous Model (WHAM6), and supporting field evidence is presented. We define a toxicity function (F{sub TOX}) by summing the products: (amount of invertebrate-bound cation) x (cation-specific toxicity coefficient, {alpha}{sub i}). Species richness data for Ephemeroptera, Plecoptera and Trichoptera (EPT), are then described with a lower threshold of F{sub TOX}, below which all organisms are present and toxic effects are absent, and an upper threshold above which organisms are absent. Between the thresholds the number of species declines linearly with F{sub TOX}. We parameterised the model with chemistry and EPT data for low-order streamwaters affected by acid deposition and/or abandoned mines, representing a total of 412 sites across three continents. The fitting made use of quantile regression, to take into account reduced species richness caused by (unknown) factors other than cation toxicity. Parameters were derived for the four most common or abundant cations, with values of {alpha}{sub i} following the sequence (increasing toxicity) H{sup +} < Al < Zn < Cu. For waters affected mainly by H{sup +} and Al, F{sub TOX} shows a steady decline with increasing pH, crossing the lower threshold near to pH 7. Competition effects among cations mean that toxicity due to Cu and Zn is rare at lower pH values, and occurs mostly between pH 6 and 8.

  17. Assessment of local wood species used for the manufacture of cookware and the perception of chemical benefits and chemical hazards associated with their use in Kumasi, Ghana

    Directory of Open Access Journals (Sweden)

    Mensah John Kenneth

    2012-12-01

    Full Text Available Abstract Background Historical proven wood species have no reported adverse health effect associated with its past use. Different historical proven species have traditionally been used to manufacture different wooden food contact items. This study uses survey questionnaires to assess suppliers’, manufacturers’, retailers’ and consumers’ (end-users’ preferences for specific wood species, to examine the considerations that inform these preferences and to investigate the extent of awareness of the chemical benefits and chemical hazards associated with wooden food contact material use. Methods Through the combined use of a cross sectional approach and a case study design, 25 suppliers, 25 manufacturers, 25 retailers and 125 consumers (end-users of wooden food contact materials in four suburbs in Kumasi Metropolitan Area (Anloga junction, Ahinsan Bus Stop, Ahwia-Pankrono and Race Course and Ashanti Akyim Agogo in the Ashanti Akyim North District of the Ashanti Region were administered with closed ended questionnaires. The questionnaires were prepared in English, but local language, Twi, was used to translate and communicate the content of the questionnaire where necessary. Results Suppliers’, manufacturers’ and retailers’ preferences for specific wood species for most wooden cookware differed from that of consumers (end-users. But all respondent groups failed to indicate any awareness of chemical benefits or chemical hazards associated with either the choice of specific wood species for specific wooden cookware or with the general use of wooden food contact materials. The lack of appreciation of chemical benefits or hazards associated with active principles of wooden cookware led to heavy reliance of consumers (end-users on the wood density, price, attractive grain pattern and colour or on the judgement of retailers in their choice of specific species for a wooden cookware. Conclusion This study contributes some practical suggestions

  18. Anti-Inflammatory Properties and Chemical Characterization of the Essential Oils of Four Citrus Species.

    Directory of Open Access Journals (Sweden)

    Jorge Luis Amorim

    Full Text Available Citrus fruits have potential health-promoting properties and their essential oils have long been used in several applications. Due to biological effects described to some citrus species in this study our objectives were to analyze and compare the phytochemical composition and evaluate the anti-inflammatory effect of essential oils (EO obtained from four different Citrus species. Mice were treated with EO obtained from C. limon, C. latifolia, C. aurantifolia or C. limonia (10 to 100 mg/kg, p.o. and their anti-inflammatory effects were evaluated in chemical induced inflammation (formalin-induced licking response and carrageenan-induced inflammation in the subcutaneous air pouch model. A possible antinociceptive effect was evaluated in the hot plate model. Phytochemical analyses indicated the presence of geranial, limonene, γ-terpinene and others. EOs from C. limon, C. aurantifolia and C. limonia exhibited anti-inflammatory effects by reducing cell migration, cytokine production and protein extravasation induced by carrageenan. These effects were also obtained with similar amounts of pure limonene. It was also observed that C. aurantifolia induced myelotoxicity in mice. Anti-inflammatory effect of C. limon and C. limonia is probably due to their large quantities of limonene, while the myelotoxicity observed with C. aurantifolia is most likely due to the high concentration of citral. Our results indicate that these EOs from C. limon, C. aurantifolia and C. limonia have a significant anti-inflammatory effect; however, care should be taken with C. aurantifolia.

  19. Anti-Inflammatory Properties and Chemical Characterization of the Essential Oils of Four Citrus Species

    Science.gov (United States)

    Amorim, Jorge Luis; Simas, Daniel Luiz Reis; Pinheiro, Mariana Martins Gomes; Moreno, Daniela Sales Alviano; Alviano, Celuta Sales; da Silva, Antonio Jorge Ribeiro

    2016-01-01

    Citrus fruits have potential health-promoting properties and their essential oils have long been used in several applications. Due to biological effects described to some citrus species in this study our objectives were to analyze and compare the phytochemical composition and evaluate the anti-inflammatory effect of essential oils (EO) obtained from four different Citrus species. Mice were treated with EO obtained from C. limon, C. latifolia, C. aurantifolia or C. limonia (10 to 100 mg/kg, p.o.) and their anti-inflammatory effects were evaluated in chemical induced inflammation (formalin-induced licking response) and carrageenan-induced inflammation in the subcutaneous air pouch model. A possible antinociceptive effect was evaluated in the hot plate model. Phytochemical analyses indicated the presence of geranial, limonene, γ-terpinene and others. EOs from C. limon, C. aurantifolia and C. limonia exhibited anti-inflammatory effects by reducing cell migration, cytokine production and protein extravasation induced by carrageenan. These effects were also obtained with similar amounts of pure limonene. It was also observed that C. aurantifolia induced myelotoxicity in mice. Anti-inflammatory effect of C. limon and C. limonia is probably due to their large quantities of limonene, while the myelotoxicity observed with C. aurantifolia is most likely due to the high concentration of citral. Our results indicate that these EOs from C. limon, C. aurantifolia and C. limonia have a significant anti-inflammatory effect; however, care should be taken with C. aurantifolia. PMID:27088973

  20. Relating species and functional diversity using stable isotope probing

    Science.gov (United States)

    Prosser, J. I.; Rangel-Castro, J. I.; Mahmood, S.; Nicol, G.; Meharg, A. A.; Killham, K. S.

    2004-12-01

    Microbial communities play an essential role in biogeochemical cycles and analysis of laboratory cultures has provided much information on biochemical processes and physiological characteristics of functional groups of microorganisms responsible for these processes. However, the majority of microorganisms cannot be grown readily in laboratory culture and cultivation-independent molecular techniques are required for analysis of community structure and diversity. These techniques have demonstrated considerable microbial diversity in natural communities and have revealed the existence of abundant microorganisms belonging to novel, previously unsuspected microbial groups. Molecular analysis of natural communities typically provides little information on links between specific microorganisms and the biogeochemical processes that they carry out. We are therefore ignorant of the significance of microbial diversity for ecosystem processes and of the ecosystem function of uncultivated, but abundant microbial groups. Stable isotope probing enables identification of which members of a community are involved in the utilisation of specific substrates, particularly carbon substrates. It involves amendment of environmental samples, or field application with 13C-labelled carbon substrates and, after a period of exposure, extraction of nucleic acids and separation of 13C-labelled (heavy) and 12C-labelled (light) nucleic acid pools by density gradient centrifugation. The heavy nucleic acid pool will be derived only from organisms assimilating the labelled substrate.Molecular analysis of this pool provides information on identity and relative abundance of active members of the community. The technique therefore enables in situ functional analysis of microbial groups without the requirement for laboratory cultivation. Stable isotope probing has been used to determine which organisms are involved in the degradation of specific organic substrates, including recalcitrant compounds, and

  1. Chemical and morphological characteristics of key tree species of the Carpathian Mountains

    Energy Technology Data Exchange (ETDEWEB)

    Mankovska, Blanka; Godzik, Barbara; Badea, Ovidiu; Shparyk, Yuri; Moravcik, Pavel

    2004-07-01

    Concentrations of Al, B, Ca, Cu, Fe, K, Mg, Mn, N, Na, P, S and Zn in the foliage of white fir (Abies alba), Norway spruce (Picea abies) and common beech (Fagus sylvatica) from 25 sites of the Carpathian Mts. forests (Czech Republic, Poland, Romania, Slovakia and Ukraine) are discussed in a context of their limit values. S/N ratio was different from optimum in 90% of localities when compared with the European limit values. Likewise we found increase of Fe and Cu concentrations compared with their background levels in 100% of locations. Mn concentrations were increased in 76% of localities. Mn mobilization values indicate the disturbance of physiological balance leading to the change of the ratio with Fe. SEM-investigation of foliage waxes from 25 sites in the Carpathian Mts. showed, that there is a statistically significant difference in mean wax quality. Epistomatal waxes were damaged as indicated by increased development of net and amorphous waxes. The most damaged stomata in spruce needles were from Yablunitsa, Synevir and Brenna; in fir needles from Stoliky, and in beech leaves from Mala Fatra, Morske Oko and Beregomet. Spruce needles in the Carpathian Mts. had more damaged stomata than fir needles and beech leaves. Spruce seems to be the most sensitive tree species to environmental stresses including air pollution in forests of the Carpathian Mountains. Foliage surfaces of three forest tree species contained Al, Si, Ca, Fe, Mg, K, Cl, Mn, Na, Ni and Ti in all studied localities. Presence of nutrition elements (Ca, Fe, Mg, K and Mn) on foliage surface hinders opening and closing stomata and it is not physiologically usable for tree species. - Chemical composition of foliage and structure of epicuticular waxes indicated phytotoxic effects of air pollution in many forest sites of the Carpathian Mountains.

  2. Chemical and morphological characteristics of key tree species of the Carpathian Mountains

    International Nuclear Information System (INIS)

    Concentrations of Al, B, Ca, Cu, Fe, K, Mg, Mn, N, Na, P, S and Zn in the foliage of white fir (Abies alba), Norway spruce (Picea abies) and common beech (Fagus sylvatica) from 25 sites of the Carpathian Mts. forests (Czech Republic, Poland, Romania, Slovakia and Ukraine) are discussed in a context of their limit values. S/N ratio was different from optimum in 90% of localities when compared with the European limit values. Likewise we found increase of Fe and Cu concentrations compared with their background levels in 100% of locations. Mn concentrations were increased in 76% of localities. Mn mobilization values indicate the disturbance of physiological balance leading to the change of the ratio with Fe. SEM-investigation of foliage waxes from 25 sites in the Carpathian Mts. showed, that there is a statistically significant difference in mean wax quality. Epistomatal waxes were damaged as indicated by increased development of net and amorphous waxes. The most damaged stomata in spruce needles were from Yablunitsa, Synevir and Brenna; in fir needles from Stoliky, and in beech leaves from Mala Fatra, Morske Oko and Beregomet. Spruce needles in the Carpathian Mts. had more damaged stomata than fir needles and beech leaves. Spruce seems to be the most sensitive tree species to environmental stresses including air pollution in forests of the Carpathian Mountains. Foliage surfaces of three forest tree species contained Al, Si, Ca, Fe, Mg, K, Cl, Mn, Na, Ni and Ti in all studied localities. Presence of nutrition elements (Ca, Fe, Mg, K and Mn) on foliage surface hinders opening and closing stomata and it is not physiologically usable for tree species. - Chemical composition of foliage and structure of epicuticular waxes indicated phytotoxic effects of air pollution in many forest sites of the Carpathian Mountains

  3. Significant divergence of sex-related non-coding RNA expression patterns among closely related species in Drosophila

    Institute of Scientific and Technical Information of China (English)

    YANG YongFei; LI Zheng; FAN QiChang; LONG ManYuan; ZHANG WenXia

    2007-01-01

    Whether or not non-coding RNA genes play a significant role in reproductive biology and evolution of sex determination systems is an important problem. We report identification of sex-related non-coding RNA (ncRNA) genes and an analysis of ncRNAs expression patterns among Drosophila species. We detected 12 candidate ncRNAs that are expressed in the gonads of D. melanogaster by an integrative approach of RT-PCR and computational analysis of sequence conservation across species. We experimentally analyzed these ncRNA gene transcripts in head, ovary and testis of closely related species D. simulans, D. yakuba, D. pseudoobscura and D. virilis. We observed that the occurrence and extent of expression of most ncRNA fragments among closely related species show significant divergence.

  4. Wing pattern morphology of three closely related Melitaea (Lepidoptera, Nymphalidae species reveals highly inaccurate external morphology-based species identification

    Directory of Open Access Journals (Sweden)

    Jure Jugovic

    2014-06-01

    Full Text Available Wing morphology of the three closely related species of Melitaea – M. athalia (Rottemburg, 1775, M. aurelia (Nickerl, 1850 and M. britomartis Assmann, 1847 – co-occurring in the Balkans (SE Europe was investigated in detail through visual inspection, morphometric analysis and multivariate statistical analysis. Results are compared to recent phylogenetic studies, searching for concordant patterns and discrepancies between the two approaches. The morphology of the genitalic structures is also compared with the results of the other two approaches. The main conclusions are as follows: (1 small albeit significant differences in wing morphology exist among the three species and (2 while the structure of male genitalia and phylogenetic position of the three species are concordant, they are (3 in discordance with the wing morphology. The present study represents another example where identification based on external morphology would lead to highly unreliable determinations, hence identification based on phylogenetic studies and/or genitalia is strongly recommended not only for the three studied species but also more broadly within the genus. Furthermore, we show that some of the characters generally used in the identification of these three Melitaea species should be avoided in future.

  5. Meta-analysis of the relative sensitivity of semi-natural vegetation species to ozone

    International Nuclear Information System (INIS)

    This study identified 83 species from existing publications suitable for inclusion in a database of sensitivity of species to ozone (OZOVEG database). An index, the relative sensitivity to ozone, was calculated for each species based on changes in biomass in order to test for species traits associated with ozone sensitivity. Meta-analysis of the ozone sensitivity data showed a wide inter-specific range in response to ozone. Some relationships in comparison to plant physiological and ecological characteristics were identified. Plants of the therophyte lifeform were particularly sensitive to ozone. Species with higher mature leaf N concentration were more sensitive to ozone than those with lower leaf N concentration. Some relationships between relative sensitivity to ozone and Ellenberg habitat requirements were also identified. In contrast, no relationships between relative sensitivity to ozone and mature leaf P concentration, Grime's CSR strategy, leaf longevity, flowering season, stomatal density and maximum altitude were found. The relative sensitivity of species and relationships with plant characteristics identified in this study could be used to predict sensitivity to ozone of untested species and communities. - Meta-analysis of the relative sensitivity of semi-natural vegetation species to ozone showed some relationships with physiological and ecological characteristics

  6. Number of endemic and native plant species in the Galapagos Archipelago in relation to geographical parameters

    DEFF Research Database (Denmark)

    Willerslev, E.; Hansen, Anders J.; Nielsen, K. K.;

    2002-01-01

    species numbers as dependent and log-transformed modified area (i.e. area not covered with barren lava) as an independent variable. This holds both for total species number, for native species number, for endemic species number and for total number of seed plants as well as number of endemic seed plants......By simple and multiple regression analyses we investigate updated species numbers of endemic and native vascular plants and seed plants in the Galapagos Archipelago in relation to geographical parameters. We find that the best models to describe species numbers are regression models with log-transformed....... For the ratio between endemic and native species, modified area is also the major significant variable, but with a negative regression slope. Multiple regression models show that some isolation measures are significant contributors and may explain some of the residual variation, but their contribution...

  7. Long-Term Changes in Species Composition and Relative Abundances of Sharks at a Provisioning Site

    OpenAIRE

    Juerg M. Brunnschweiler; Abrantes, Kátya G.; Barnett, Adam

    2014-01-01

    Diving with sharks, often in combination with food baiting/provisioning, has become an important product of today’s recreational dive industry. Whereas the effects baiting/provisioning has on the behaviour and abundance of individual shark species are starting to become known, there is an almost complete lack of equivalent data from multi-species shark diving sites. In this study, changes in species composition and relative abundances were determined at the Shark Reef Marine Reserve, a multi-...

  8. The top 27 animal alien species introduced into Europe for aquaculture and related activities.

    OpenAIRE

    D. SAVINI; A. OCCHIPINTI AMBROGI; Marchini, A; Tricarico, E; GHERARDI F.; Olenin, S.; Gollasch, S.

    2010-01-01

    The information extracted from IMPASSE, DAISIE, Fish-Base, and FAO-DIAS inventories of alien species were used to draw a list of the 27 most utilized animal alien species for aquaculture and related activities (e.g. stocking, sport fishing, ornamental purposes) in Europe. Three variables have been considered to assess their negative ecological impacts when these species escape from aquaculture facilities: (i) their distribution across Europe (including non-EU Member States); (ii) evidence of ...

  9. The organisation and evolution of a repeated DNA sequence family in related Allium species

    OpenAIRE

    Evans, Ian Jeffrey

    1983-01-01

    A large proportion of the genomes of species belonging to the genus Allium comprises repetitive sequence DNA, a component implicated as a cause of the large variation in C-values between even closely related species. The work presented here represents part of the first phase in the characterisation of some of these repetitive sequences in a number of Allium species. One repetitive DNA sequence family, BIOOO, isolated from the genome of A. sativum, has been characterised with respect to the...

  10. Root discrimination of closely related crop and weed species using FT MIR-ATR spectroscopy

    Directory of Open Access Journals (Sweden)

    Catharina eMeinen

    2015-09-01

    Full Text Available Root discrimination of species is a pre-condition for studying belowground competition processes between crop and weed species. In this experiment, we tested Fourier transform mid-infrared (FT MIR-attenuated total reflection (ATR spectroscopy to discriminate roots of closely related crop and weed species grown in the greenhouse: maize/barnyard grass, barley/wild oat, wheat/blackgrass (Poaceae, and sugar beet/common lambsquarters (Chenopodiaceae. Fresh (moist and dried root segments as well as ground roots were analyzed by FT MIR-ATR spectroscopy. Root absorption spectra showed species specific peak distribution and peak height. A clear separation according to species was not possible with fresh root segments. Dried root segments (including root basis, middle section and root tip of maize/barnyard grass and sugar beet/common lambsquarters formed completely separated species clusters. Wheat and blackgrass separated in species specific clusters when root tips were removed from cluster analysis. A clear separation of dried root segments according to species was not possible in the case of barley and wild oat. Cluster analyses of ground roots revealed a 100 % separation of all tested crop and weed species combinations. Spectra grouped in Poaceae and Chenopodiaceae clusters. Within the Poaceae cluster, C3 and C4 species differed significantly in heterogeneity. Thus, root spectra reflected the degree of kinship. To quantify species proportion in root mixtures, a two- and a three-species model for species quantification in root mixtures of maize, barnyard grass, and wild oat was calculated. The models showed low standard errors of prediction (RMSEP and high residual predictive deviation (RPD values in an external test set validation. Hence, FT MIR-ATR spectroscopy seems to be a promising tool for root research even between closely related plant species.

  11. Molecular characterization and functional analysis of elite genes in wheat and its related species

    Indian Academy of Sciences (India)

    Jirui Wang; Pengfei Qi; Yuming Wei; Dengcai Liu; George Fedak; Youliang Zheng

    2010-12-01

    The tribe Triticeae includes major cereal crops (bread wheat, durum wheat, triticale, barley and rye), as well as abundant forage and lawn grasses. Wheat and its wild related species possess numerous favourable genes for yield improvement, grain quality enhancement, biotic and abiotic stress resistance, and constitute a giant gene pool for wheat improvement. In recent years, significant progress on molecular characterization and functional analysis of elite genes in wheat and its related species have been achieved. In this paper, we review the cloned functional genes correlated with grain quality, biotic and abiotic stress resistance, photosystem and nutrition utilization in wheat and its related species.

  12. Chemical taxonomy of red-flowered wild Camellia species based on floral anthocyanins.

    Science.gov (United States)

    Li, Jian-Bin; Hashimoto, Fumio; Shimizu, Keiichi; Sakata, Yusuke

    2013-01-01

    This study uses anthocyanins in the red flowers of section Camellia as taxonomic markers to investigate the phenetic relationships among 33 wild species from China, Taiwan, and Japan. The 25 anthocyanins from section Camellia produced 38 pigment patterns that serve as phenetic markers. Principal Component Analysis (PCA) indicated that the attachment of one or two glucoses to the cyanidin-core structure at the 3- or the 3- and 5-positions, respectively, was the most influential pattern against the first factor, Z₁. In addition, two alternative pigment patterns, acylated or non-acylated, and the structural isomerism (cis- or trans-) of the p-coumaroyl group were relatively significant patterns. Ward's minimum-variance cluster analysis (WMVCA) produced a dendrogram that consisted of two sub-clusters. One sub-cluster (A) was constructed by species that have mainly two types of anthocyanins: 3,5-di-O-β-glucosides (Camellia saluenensis) and sambubioside of cyanidin (Camellia reticulata). The other sub-cluster (B) was made up of the 3-O-β-glucosides of cyanidin (Camellia japonica) and delphinidin (Camellia hongkongensis), with a higher proportion of the 3-O-β-galactosides (Camellia mairei and Camellia boreali-yunnanica). The former group showed a higher proportion of acylation, over 63%, but with the exception of Camellia azalea. The latter group showed less than 52% acylation, but with the exception of C. hongkongensis and C. boreali-yunnanica. PCA and WMVCA indicated that the greater the amount of di-O-glycosides and acylation, the more primitive anthocyanin traits the species possess. Based on these results, in conjunction with geographical and literary information, the data suggest that the Xinan district is the site/center of origin for the red-flowered Camellia species of which both C. saluenensis and C. reticulata have the most primitive anthocyanin traits. PMID:23122772

  13. Relating metal bioavailability to risk assessment for aquatic species: Daliao River watershed, China

    International Nuclear Information System (INIS)

    The spatial distribution of metal bioavailability (Ni, Cu, Zn, and Pb) was first evaluated within the waters of Daliao River watershed, using the diffusive gradient in thin films (DGT) and chemical equilibrium models. To assess potential risks associated with metal bioavailability, site-specific 95% protection levels (HC5), risk characterizations ratios (RCR) and ratios of DGT-labile/HC5 were derived, using species sensitivity distribution (SSD). The highest bioavailability values for metals were recorded in the main channel of the Daliao River, followed by the Taizi River. Dynamic concentrations predicted by WHAM 7.0 and NICA-Donnan for Cu and Zn agreed well with DGT results. The estuary of the Daliao River was found to have the highest risks related to Ni, Cu, and Zn. The number of sites at risk increased when considering the total toxicity of Ni, Cu, and Zn. - Highlights: • Spatial variation in metal bioavailability within Daliao River watershed was studied. • WHAM 7.0 and NICA-Donnan examined the differences in predicting metal speciation. • Bioavailability values of metals were highest in main channel of the Daliao River. • Site-specific 95% protection levels (HC5)/risk variations were assessed using SSD. • Maximum risks from Ni, Cu, and Zn occurred in the estuary of the Daliao River. - The highest bioavailability values and the highest risks of metals were found in the estuary of the Daliao River

  14. Species from within the Phytophthora cryptogea complex and related species, P. erythroseptica and P. sansomeana, readily hybridize.

    Science.gov (United States)

    Safaiefarahani, Banafsheh; Mostowfizadeh-Ghalamfarsa, Reza; Hardy, Giles E St J; Burgess, Treena I

    2016-08-01

    During a study on the phylogenetic relationships between species in the Phytophthora cryptogea complex and related species, Phytophthora erythroseptica and Phytophthora sansomeana, 19 hybrid isolates with multiple polymorphisms in the nuclear sequences were observed. Molecular characterization of hybrids was achieved by sequencing three nuclear (internal transcribed spacers, β-tubulin (TUB), heat shock protein 90) and two mitochondrial (cytochrome c oxidase subunit I (coxI), NADH dehydrogenase subunit I (NADH)) gene regions and cloning of the single-copy nuclear gene, TUB. Based on the molecular studies the hybrid isolates belonged to six distinct groups between P. cryptogea, P. erythroseptica, Phytophthora pseudocryptogea, P. sansomeana, and Phytophthora sp. kelmania. In all cases, only a single coxI and NADH allele was detected and nuclear genes were biparentally inherited, suggesting that the hybrids arose from sexual recombination events. Colony morphology, growth rate, cardinal temperatures, breeding system, and morphology of sporangia, oogonia, oospores, and antheridia were also determined. Some morphological differences between the hybrids and the parental species were noted; however, they were not sufficient to reliably distinguish the taxa and DNA markers from nuclear and mitochondrial genes will to be necessary for their identification. The parental species are all important pathogens of agricultural fields that have been transported globally. With the apparent ease of hybridization within this group there is ample opportunity for virulent hybrids to form, perhaps with extended host ranges. PMID:27521629

  15. Chemical Analysis and Biological Activity of the Essential Oils of Two Endemic Soqotri Commiphora Species

    Directory of Open Access Journals (Sweden)

    Wulf Schultze

    2010-02-01

    Full Text Available The barks of two endemic Commiphora species namely, Commiphora ornifolia (Balf.f. Gillett and Commiphora parvifolia Engl., were collected from Soqotra Island in Yemen and their essential oils were obtained by hydrodistillation. The chemical composition of both oils was investigated by GC and GC-MS. Moreover, the essential oils were evaluated for their antimicrobial activity against two Gram-positive bacteria, two Gram-negative bacteria and one yeast species by using a broth micro-dilution assay for minimum inhibitory concentrations (MIC and for their antioxidant activity by measuring the DPPH radical scavenging activity. A total of 45 constituents of C. ornifolia (85.6% and 44 constituents of C. parvifolia (87.1% were identified. The oil of C. ornifolia was characterized by a high content of oxygenated monoterpenes (56.3%, of which camphor (27.3%, α-fenchol (15.5%, fenchone (4.4% and borneol (2.9% were identified as the main components. High contents of oxygenated sesquiterpenes (36.1% and aliphatic acids (22.8% were found in C. parvifolia oil, in which caryophyllene oxide (14.2%, β-eudesmol (7.7%, bulnesol (5.7%, T-cadinol (3.7% and hexadecanoic acid (18.4% predominated. The results of the antimicrobial assay showed that both oils exhibited moderate to high antibacterial activity especially against Gram-positive bacteria. C. ornifolia oil was the most active. In addition, the DPPH-radical scavenging assay exhibited only weak antioxidant activities for both oils at the high concentration tested.

  16. Chemical Composition, Nitrogen Fractions and Amino Acids Profile of Milk from Different Animal Species.

    Science.gov (United States)

    Rafiq, Saima; Huma, Nuzhat; Pasha, Imran; Sameen, Aysha; Mukhtar, Omer; Khan, Muhammad Issa

    2016-07-01

    Milk composition is an imperative aspect which influences the quality of dairy products. The objective of study was to compare the chemical composition, nitrogen fractions and amino acids profile of milk from buffalo, cow, sheep, goat, and camel. Sheep milk was found to be highest in fat (6.82%±0.04%), solid-not-fat (11.24%±0.02%), total solids (18.05%±0.05%), protein (5.15%±0.06%) and casein (3.87%±0.04%) contents followed by buffalo milk. Maximum whey proteins were observed in camel milk (0.80%±0.03%), buffalo (0.68%±0.02%) and sheep (0.66%±0.02%) milk. The non-protein-nitrogen contents varied from 0.33% to 0.62% among different milk species. The highest r-values were recorded for correlations between crude protein and casein in buffalo (r = 0.82), cow (r = 0.88), sheep (r = 0.86) and goat milk (r = 0.98). The caseins and whey proteins were also positively correlated with true proteins in all milk species. A favorable balance of branched-chain amino acids; leucine, isoleucine, and valine were found both in casein and whey proteins. Leucine content was highest in cow (108±2.3 mg/g), camel (96±2.2 mg/g) and buffalo (90±2.4 mg/g) milk caseins. Maximum concentrations of isoleucine, phenylalanine, and histidine were noticed in goat milk caseins. Glutamic acid and proline were dominant among non-essential amino acids. Conclusively, current exploration is important for milk processors to design nutritious and consistent quality end products. PMID:26954163

  17. On the detectability of trace chemical species in the martian atmosphere using gas correlation filter radiometry

    Science.gov (United States)

    Sinclair, J. A.; Irwin, P. G. J.; Calcutt, S. B.; Wilson, E. L.

    2015-11-01

    The martian atmosphere is host to many trace gases including water (H2O) and its isotopologues, methane (CH4) and potentially sulphur dioxide (SO2), nitrous oxide (N2O) and further organic compounds, which would serve as indirect tracers of geological, chemical and biological processes on Mars. With exception of the recent detection of CH4 by Curiosity, previous detections of these species have been unsuccessful or considered tentative due to the low concentrations of these species in the atmosphere (∼10-9 partial pressures), limited spectral resolving power and/or signal-to-noise and the challenge of discriminating between telluric and martian features when observing from the Earth. In this study, we present radiative transfer simulations of an alternative method for detection of trace gas species - the gas correlation radiometry method. Two potential observing scenarios were explored where a gas correlation filter radiometer (GCFR) instrument: (1) performs nadir and/or limb sounding of the martian atmosphere in the thermal infrared (200-2000 cm-1 from an orbiting spacecraft or (2) performs solar occultation measurements in the near-infrared (2000-5000 cm-1) from a lander on the martian surface. In both scenarios, simulations of a narrowband filter radiometer (without gas correlation) were also generated to serve as a comparison. From a spacecraft, we find that a gas correlation filter radiometer, in comparison to a filter radiometer (FR), offers a greater discrimination between temperature and dust, a greater discrimination between H2O and HDO, and would allow detection of N2O and CH3OH at concentrations of ∼10 ppbv and ∼2 ppbv, respectively, which are lower than previously-derived upper limits. However, the lowest retrievable concentration of SO2 (approximately 2 ppbv) is comparable with previous upper limits and CH4 is only detectable at concentrations of approximately 10 ppbv, which is an order of magnitude higher than the concentration recently measured

  18. Susceptibility of helminth species from horses against different chemical compounds in Brazil.

    Science.gov (United States)

    Felippelli, Gustavo; Cruz, Breno Cayeiro; Gomes, Lucas Vinicius Costa; Lopes, Welber Daniel Zanetti; Teixeira, Weslen Fabrício Pires; Maciel, Willian Giquelin; Buzzulini, Carolina; Bichuette, Murilo Abud; Campos, Gabriel Pimentel; Soares, Vando Edésio; Bergamasco, Paula Luzia Formigoni; de Oliveira, Gilson Pereira; da Costa, Alvimar José

    2015-09-15

    By means of parasitological necropsies, the present study aimed to evaluate, in six experiments, the degree of susceptibility or resistance of different helminth species which naturally infect horses to ivermectin 0.2 mg/kg, abamectin 0.2 mg/kg, moxidectin 0.4 mg/kg, trichlorfon 35 mg/kg, ivermectin 0.2 mg/kg+praziquantel 2.5 mg/kg, abamectin 0.2 mg/kg+praziquantel 2.5 mg/kg and ivermectin 0.2 mg/kg+6.6 mg/kg pyrantel. At experimental day zero, the horses were allocated to treatment groups based on average counts of strongylid eggs per gram of feces (EPG) obtained on days -3, -2 and -1. Oxyuris sp. infections were confirmed as positive or negative. All the animals in the six experiments were naturally infected by this helminth species. Each group (control or treated) consisted of six animals. All the assessed Habronema muscae populations analyzed were susceptible to ivermectin, abamectin and moxidectin. Of the six Trichostrongylus axei populations, four were susceptible to ivermectin, abamectin, moxidectin, trichlorfon and ivermectin+praziquantel, and two were resistant to abamectin+praziquantel and ivermectin+pyrantel. Both Strongyloides westeri populations analyzed were susceptible to ivermectin, abamectin, moxidectin and abamectin+praziquantel. For O. equi, resistance was found in four different populations treated with ivermectin, abamectin, moxidectin, trichlorfon and ivermectin+praziquantel. Only combinations of abamectin+praziquantel and ivermectin+pyrantel were effective against this parasite species. All the large strongyles diagnosed in the present study (Strongyus edentatus, Strongyus vulgaris and Triodontophorus serratus) were susceptible to all the chemicals tested, with the exception of trichlorfon. Of the Cyathostominae populations, one was diagnosed as resistant to ivermectin and another to trichlorfon. The remaining populations from this nematode group were considered to be sensitive to ivermectin, abamectin, moxidectin, ivermectin

  19. CD-REST: a system for extracting chemical-induced disease relation in literature.

    Science.gov (United States)

    Xu, Jun; Wu, Yonghui; Zhang, Yaoyun; Wang, Jingqi; Lee, Hee-Jin; Xu, Hua

    2016-01-01

    Mining chemical-induced disease relations embedded in the vast biomedical literature could facilitate a wide range of computational biomedical applications, such as pharmacovigilance. The BioCreative V organized a Chemical Disease Relation (CDR) Track regarding chemical-induced disease relation extraction from biomedical literature in 2015. We participated in all subtasks of this challenge. In this article, we present our participation system Chemical Disease Relation Extraction SysTem (CD-REST), an end-to-end system for extracting chemical-induced disease relations in biomedical literature. CD-REST consists of two main components: (1) a chemical and disease named entity recognition and normalization module, which employs the Conditional Random Fields algorithm for entity recognition and a Vector Space Model-based approach for normalization; and (2) a relation extraction module that classifies both sentence-level and document-level candidate drug-disease pairs by support vector machines. Our system achieved the best performance on the chemical-induced disease relation extraction subtask in the BioCreative V CDR Track, demonstrating the effectiveness of our proposed machine learning-based approaches for automatic extraction of chemical-induced disease relations in biomedical literature. The CD-REST system provides web services using HTTP POST request. The web services can be accessed fromhttp://clinicalnlptool.com/cdr The online CD-REST demonstration system is available athttp://clinicalnlptool.com/cdr/cdr.html. Database URL:http://clinicalnlptool.com/cdr;http://clinicalnlptool.com/cdr/cdr.html. PMID:27016700

  20. Image optimization for chemical species tomography with an irregular and sparse beam array

    International Nuclear Information System (INIS)

    High-speed tomographic imaging of hostile engineering processes using absorption-based measurements presents a number of difficulties. In some cases, these challenges include severe limitations on the number of available measurement paths through the subject and the process of designing the geometrical arrangement of these paths for best imaging performance. This paper considers the case of a chemical species tomography system based on near-IR spectroscopic absorption measurements, intended for application to one cylinder of a multi-cylinder production engine. Some of the results, however, are also applicable to other hard-field tomographic modalities in applications where similar constraints may be encountered. A hitherto unreported design criterion is presented for optimal beam geometry for imaging performance, resulting in an irregular array with only 27 measurement paths through the subject for the engine application. Image reconstruction for this severely limited geometry is considered at length, using both simulated and experimental phantom data. Novel methods are presented for the practical generation of gaseous phantoms for calibration and testing of the system. The propane absorption coefficient at 1700 nm is measured. Quantitative imaging of propane plumes in air is demonstrated, showing good localization of circular plumes with diameter as small as 1/5 of the subject diameter and excellent imaging of multiple plumes

  1. Chemical and biochemical composition of caviar from different sturgeon species and origins.

    Science.gov (United States)

    Wirth, M; Kirschbaum, F; Gessner, J; Krüger, A; Patriche, N; Billard, R

    2000-08-01

    The chemical and biochemical composition of caviar in 22 specimens of wild caught and of 2 farmed animals were measured. The results include grain size, protein and fat content, fatty acid composition of triglycerides and phospholipids, as well as the concentrations of relevant heavy metals and chlorinated hydrocarbons. The average protein content varied between 26.2 and 31.1% (wet weight) and fat from 10.9 to 19.4% (wet weight) with lowest values for caviar from farmed sturgeon. The triglycerides and phospholipids contained more n-3 fatty acids, especially eicosapentaenoic and docosahexaenoic acid than n-6 fatty acids. The copper and zinc concentrations varied between 1.20 and 1.69 and 10.3 and 12.4 mg/kg (wet weight), respectively. These values reflect the elevated requirement of sturgeons for these components. Lead content varied between 0.06 and 0.15 mg/kg (wet weight). The cadmium concentrations were less than 5 micrograms/kg (wet weight) leading to the conclusion that no accumulation took place in the eggs. The concentrations of sigma DDT and sigma PCB were extremely high in caviar from Huso huso compared to the samples of the other species thus reflecting the different food habits leading to increased bio-accumulation. PMID:10996895

  2. Toxicological and chemical investigation of untreated municipal wastewater: Fraction- and species-specific toxicity.

    Science.gov (United States)

    Hrubik, Jelena; Glisic, Branka; Tubic, Aleksandra; Ivancev-Tumbas, Ivana; Kovacevic, Radmila; Samardzija, Dragana; Andric, Nebojsa; Kaisarevic, Sonja

    2016-05-01

    Absence of a municipal wastewater (WW) treatment plant results in the untreated WW discharge into the recipient. The present study investigated toxic effects and chemical composition of water extracts and fractions from untreated WW and recipient Danube River (DR). Samples were prepared by solid-phase extraction and silica gel fractionation and screened for EROD activity and cytotoxicity using aquatic models, comprising of fish liver cells (PLHC-1) and a model of the early development of zebrafish embryos, while rat (H4IIE) and human (HepG2) hepatoma cells served as mammalian models. Polar fraction caused cytotoxicity and increased the EROD activity in PLHC-1 cells, and increased mortality and developmental abnormalities in developing zebrafish embryos. In H4IIE, polar fraction induced inhibition of cell growth and increased EROD activity, whereas HepG2 exerted low or no response to the exposure. Non-polar and medium-polar fractions were ineffective. Tentative identification by GC/MS showed that WW is characterized by the hydrocarbons, alkylphenols, plasticizers, and a certain number of benzene derivatives and organic acids. In DR, smaller number of organic compounds was identified and toxicity was less pronounced than in WW treatments. The present study revealed the potent toxic effect of polar fraction of untreated WW, with biological responses varying in sensitivity across organisms. Obtained results confirmed that fraction- and species-specific toxicity should be considered when assessing health risk of environmental pollution. PMID:26829069

  3. Chemical sanitizers to control biofilms formed by two Pseudomonas species on stainless steel surface

    Directory of Open Access Journals (Sweden)

    Danila Soares Caixeta

    2012-03-01

    Full Text Available The biofilm formation of Pseudomonas aeruginosa and Pseudomonas fluorescens on AISI 304 stainless steel in the presence of reconstituted skim milk under different temperatures was conducted, and the potential of three chemical sanitizers in removing the mono-species biofilms formed was compared. Pseudomonas aeruginosa cultivated in skim milk at 28 °C presented better growth rate (10.4 log CFU.mL-1 when compared with 3.7 and 4.2 log CFU.mL-1 for P. aeruginosa and P. fluorescens cultivated at 7 °C, respectively. Pseudomonas aeruginosa formed biofilm when cultivated at 28 °C. However, only the adhesion of P. aeruginosa and P. fluorescens was observed when incubated at 7 °C. The sodium dichloroisocyanurate was the most efficient sanitizer in the reduction of the adhered P. aeruginosa cells at 7 and 28 °C and those on the biofilm, respectively. The hydrogen peroxide was more effective in the reduction of adhered cells of P. fluorescens at 7 °C.

  4. MORPHO-CHEMICAL DESCRIPTION AND ANTIMICROBIAL ACTIVITY OF DIFFERENT OCIMUM SPECIES

    Directory of Open Access Journals (Sweden)

    KAKARAPARTHI PANDU SASTRY

    2012-12-01

    Full Text Available Basil is a popular medicinal and culinary herb, and its essential oils have been used extensively for many years in food products, perfumery, dental and oral products. Basil essential oils and their principal constituents were found to exhibit antimicrobial activity against a wide range of Gram-negative and Gram-positive bacteria, yeast, and mould. The essential oils obtained from aerial parts of three different species of Ocimum comprising twenty one germplasm lines were investigated for their essential oil composition and antimicrobial activity during 2010. Essential oils from seventeen germplasm lines in Ocimum basilicum and two each in Ocimum tenuiflorum and Ocimum gratissimum were investigated for anti-microbial activity against four bacterial strains (Staphylococcus aureus, Bacillus sps., Escherichia coli and Pseudomonas aeruginosa. The morpho-chemotypes exhibited wide variability for morphological and chemical traits. Anti-bacterial activity was found to be high for Staphylococcus aureus, moderate for Escherichia coli, low for Bacillus and Pseudomonas aeruginosa was highly resistant. The essential oils of Pale Green-Broad Leaves (O. basilicum and CIM Ayu (O. gratissimum exhibited significant antibacterial activity against both S. aureus and E. coli signifying them promising for anti-bacterial activity. No relationship was observed between chemotype specificity and anti-bacterial activity, indicating that apart from major components of essential oil, minor components and other factors may be responsible for anti-microbial activities.

  5. Meta-analysis of the relative sensitivity of semi-natural vegetation species to ozone.

    Science.gov (United States)

    Hayes, F; Jones, M L M; Mills, G; Ashmore, M

    2007-04-01

    This study identified 83 species from existing publications suitable for inclusion in a database of sensitivity of species to ozone (OZOVEG database). An index, the relative sensitivity to ozone, was calculated for each species based on changes in biomass in order to test for species traits associated with ozone sensitivity. Meta-analysis of the ozone sensitivity data showed a wide inter-specific range in response to ozone. Some relationships in comparison to plant physiological and ecological characteristics were identified. Plants of the therophyte lifeform were particularly sensitive to ozone. Species with higher mature leaf N concentration were more sensitive to ozone than those with lower leaf N concentration. Some relationships between relative sensitivity to ozone and Ellenberg habitat requirements were also identified. In contrast, no relationships between relative sensitivity to ozone and mature leaf P concentration, Grime's CSR strategy, leaf longevity, flowering season, stomatal density and maximum altitude were found. The relative sensitivity of species and relationships with plant characteristics identified in this study could be used to predict sensitivity to ozone of untested species and communities. PMID:16899330

  6. Long-term changes in species composition and relative abundances of sharks at a provisioning site.

    Directory of Open Access Journals (Sweden)

    Juerg M Brunnschweiler

    Full Text Available Diving with sharks, often in combination with food baiting/provisioning, has become an important product of today's recreational dive industry. Whereas the effects baiting/provisioning has on the behaviour and abundance of individual shark species are starting to become known, there is an almost complete lack of equivalent data from multi-species shark diving sites. In this study, changes in species composition and relative abundances were determined at the Shark Reef Marine Reserve, a multi-species shark feeding site in Fiji. Using direct observation sampling methods, eight species of sharks (bull shark Carcharhinus leucas, grey reef shark Carcharhinus amblyrhynchos, whitetip reef shark Triaenodon obesus, blacktip reef shark Carcharhinus melanopterus, tawny nurse shark Nebrius ferrugineus, silvertip shark Carcharhinus albimarginatus, sicklefin lemon shark Negaprion acutidens, and tiger shark Galeocerdo cuvier displayed inter-annual site fidelity between 2003 and 2012. Encounter rates and/or relative abundances of some species changed over time, overall resulting in more individuals (mostly C. leucas of fewer species being encountered on average on shark feeding dives at the end of the study period. Differences in shark community composition between the years 2004-2006 and 2007-2012 were evident, mostly because N. ferrugineus, C. albimarginatus and N. acutidens were much more abundant in 2004-2006 and very rare in the period of 2007-2012. Two explanations are offered for the observed changes in relative abundances over time, namely inter-specific interactions and operator-specific feeding protocols. Both, possibly in combination, are suggested to be important determinants of species composition and encounter rates, and relative abundances at this shark provisioning site in Fiji. This study, which includes the most species from a spatially confined shark provisioning site to date, suggests that long-term provisioning may result in competitive

  7. Long-term changes in species composition and relative abundances of sharks at a provisioning site.

    Science.gov (United States)

    Brunnschweiler, Juerg M; Abrantes, Kátya G; Barnett, Adam

    2014-01-01

    Diving with sharks, often in combination with food baiting/provisioning, has become an important product of today's recreational dive industry. Whereas the effects baiting/provisioning has on the behaviour and abundance of individual shark species are starting to become known, there is an almost complete lack of equivalent data from multi-species shark diving sites. In this study, changes in species composition and relative abundances were determined at the Shark Reef Marine Reserve, a multi-species shark feeding site in Fiji. Using direct observation sampling methods, eight species of sharks (bull shark Carcharhinus leucas, grey reef shark Carcharhinus amblyrhynchos, whitetip reef shark Triaenodon obesus, blacktip reef shark Carcharhinus melanopterus, tawny nurse shark Nebrius ferrugineus, silvertip shark Carcharhinus albimarginatus, sicklefin lemon shark Negaprion acutidens, and tiger shark Galeocerdo cuvier) displayed inter-annual site fidelity between 2003 and 2012. Encounter rates and/or relative abundances of some species changed over time, overall resulting in more individuals (mostly C. leucas) of fewer species being encountered on average on shark feeding dives at the end of the study period. Differences in shark community composition between the years 2004-2006 and 2007-2012 were evident, mostly because N. ferrugineus, C. albimarginatus and N. acutidens were much more abundant in 2004-2006 and very rare in the period of 2007-2012. Two explanations are offered for the observed changes in relative abundances over time, namely inter-specific interactions and operator-specific feeding protocols. Both, possibly in combination, are suggested to be important determinants of species composition and encounter rates, and relative abundances at this shark provisioning site in Fiji. This study, which includes the most species from a spatially confined shark provisioning site to date, suggests that long-term provisioning may result in competitive exclusion among shark

  8. Metal accumulation by stream bryophytes, related to chemical speciation

    Energy Technology Data Exchange (ETDEWEB)

    Tipping, E. [Centre for Ecology and Hydrology, Lancaster Environment Centre, Library Avenue, Bailrigg, Lancaster LA1 4AP (United Kingdom)], E-mail: et@ceh.ac.uk; Vincent, C.D.; Lawlor, A.J.; Lofts, S. [Centre for Ecology and Hydrology, Lancaster Environment Centre, Library Avenue, Bailrigg, Lancaster LA1 4AP (United Kingdom)

    2008-12-15

    Metal accumulation by aquatic bryophytes was investigated using data for headwater streams of differing chemistry. The Windermere Humic Aqueous Model (WHAM) was applied to calculate chemical speciation, including competitive proton and metal interactions with external binding sites on the plants. The speciation modelling approach gives smaller deviations between observed and predicted bryophyte contents of Cu, Zn, Cd and Pb than regressions based on total filtered metal concentrations. If all four metals, and Ni, are considered together, the WHAM predictions are superior at the 1% level. Optimised constants for bryophyte binding by the trace metals are similar to those for humic substances and simple carboxylate ligands. Bryophyte contents of Na, Mg and Ca are approximately explained by binding at external sites, while most of the K is intracellular. Oxide phases account for some of the Al, and most of the Mn, Fe and Co. - Speciation modelling can be used to interpret the accumulation of Ni, Cu, Zn, Cd and Pb by bryophytes, supporting its use to quantify trace metal bioavailability in the field.

  9. Metal accumulation by stream bryophytes, related to chemical speciation

    International Nuclear Information System (INIS)

    Metal accumulation by aquatic bryophytes was investigated using data for headwater streams of differing chemistry. The Windermere Humic Aqueous Model (WHAM) was applied to calculate chemical speciation, including competitive proton and metal interactions with external binding sites on the plants. The speciation modelling approach gives smaller deviations between observed and predicted bryophyte contents of Cu, Zn, Cd and Pb than regressions based on total filtered metal concentrations. If all four metals, and Ni, are considered together, the WHAM predictions are superior at the 1% level. Optimised constants for bryophyte binding by the trace metals are similar to those for humic substances and simple carboxylate ligands. Bryophyte contents of Na, Mg and Ca are approximately explained by binding at external sites, while most of the K is intracellular. Oxide phases account for some of the Al, and most of the Mn, Fe and Co. - Speciation modelling can be used to interpret the accumulation of Ni, Cu, Zn, Cd and Pb by bryophytes, supporting its use to quantify trace metal bioavailability in the field

  10. Melting and related precursor cooperative phenomena in chemically bonded assemblies

    International Nuclear Information System (INIS)

    A number of experimental studies of condensed matter assemblies with different types of chemical bonding will provide the focus of this work. Condensed compounds X(CH3)4, with X = C,Si or Ge, are the first of such assemblies; two phase boundaries in the pressure temperature plane being studied: melting and a solid phase boundary heralding orientational disordering of molecules still however on a lattice. Secondly, directionally bonded d-electron transition metals such as Ni, Pd and Nb will be treated. Here, melting is the main focus, but the precursor transition is now the separation of a high-temperature ductile solid from a lower temperature mechanically brittle phase. A dislocation-mediated model of these transitions is discussed, leading into the third area of covalently bonded solids graphite and silicon. Here topological defect models again provide the focus; both dislocations and rotation-dislocations now being invoked. Some qualitative suggestions are made to interpret the melting curve of graphite subjected to high pressure. (author)

  11. Chemical speciation of heavy metals in sandy soils in relation to availability and mobility.

    OpenAIRE

    Temminghoff, E.J.M.

    1998-01-01

    The environmental risk of heavy metals which are present in soil at a certain total content is highly dependent on soil properties. Chemical speciation is a comprehensive term for the distribution of heavy metals over all possible chemical forms (species) in soil solution and in the solid phase. The chemical behaviour of heavy metals depends among others on the quantity and type of sorption sites at the solid surface (e.g. organic matter) and environmental conditions (e.g. pH, competitors, co...

  12. SPECIES DIFFERENCES IN ANDROGEN AND ESTROGEN RECEPTOR STRUCTURE AND FUNCTION AMONG VERTEBRATES AND INVERTEBRATES: INTERSPECIES EXTRAPOLATIONS REGARDING ENDOCRINE DISRUPTING CHEMICALS

    Science.gov (United States)

    Species Differences in Androgen and Estrogen Receptor Structure and Function Among Vertebrates and Invertebrates: Interspecies Extrapolations regarding Endocrine Disrupting Chemicals VS Wilson1, GT Ankley2, M Gooding 1,3, PD Reynolds 1,4, NC Noriega 1, M Cardon 1, P Hartig1,...

  13. Combined Effects of Long-Living Chemical Species during Microbial Inactivation Using Atmospheric Plasma-Treated Water▿

    OpenAIRE

    Naïtali, Murielle; Kamgang-Youbi, Georges; Herry, Jean-Marie; Bellon-Fontaine, Marie-Noëlle; Brisset, Jean-Louis

    2010-01-01

    Electrical discharges in humid air at atmospheric pressure (nonthermal quenched plasma) generate long-lived chemical species in water that are efficient for microbial decontamination. The major role of nitrites was evidenced together with a synergistic effect of nitrates and H2O2 and matching acidification. Other possible active compounds are considered, e.g., peroxynitrous acid.

  14. Review of chemical vapor deposition of graphene and related applications.

    Science.gov (United States)

    Zhang, Yi; Zhang, Luyao; Zhou, Chongwu

    2013-10-15

    Since its debut in 2004, graphene has attracted enormous interest because of its unique properties. Chemical vapor deposition (CVD) has emerged as an important method for the preparation and production of graphene for various applications since the method was first reported in 2008/2009. In this Account, we review graphene CVD on various metal substrates with an emphasis on Ni and Cu. In addition, we discuss important and representative applications of graphene formed by CVD, including as flexible transparent conductors for organic photovoltaic cells and in field effect transistors. Growth on polycrystalline Ni films leads to both monolayer and few-layer graphene with multiple layers because of the grain boundaries on Ni films. We can greatly increase the percentage of monolayer graphene by using single-crystalline Ni(111) substrates, which have smooth surface and no grain boundaries. Due to the extremely low solubility of carbon in Cu, Cu has emerged as an even better catalyst for the growth of monolayer graphene with a high percentage of single layers. The growth of graphene on Cu is a surface reaction. As a result, only one layer of graphene can form on a Cu surface, in contrast with Ni, where more than one layer can form through carbon segregation and precipitation. We also describe a method for transferring graphene sheets from the metal using polymethyl methacrylate (PMMA). CVD graphene has electronic properties that are potentially valuable in a number of applications. For example, few-layer graphene grown on Ni can function as flexible transparent conductive electrodes for organic photovoltaic cells. In addition, because we can synthesize large-grain graphene on Cu foil, such large-grain graphene has electronic properties suitable for use in field effect transistors. PMID:23480816

  15. Species tree estimation for the late blight pathogen, Phytophthora infestans, and close relatives.

    Directory of Open Access Journals (Sweden)

    Jaime E Blair

    Full Text Available To better understand the evolutionary history of a group of organisms, an accurate estimate of the species phylogeny must be known. Traditionally, gene trees have served as a proxy for the species tree, although it was acknowledged early on that these trees represented different evolutionary processes. Discordances among gene trees and between the gene trees and the species tree are also expected in closely related species that have rapidly diverged, due to processes such as the incomplete sorting of ancestral polymorphisms. Recently, methods have been developed for the explicit estimation of species trees, using information from multilocus gene trees while accommodating heterogeneity among them. Here we have used three distinct approaches to estimate the species tree for five Phytophthora pathogens, including P. infestans, the causal agent of late blight disease in potato and tomato. Our concatenation-based "supergene" approach was unable to resolve relationships even with data from both the nuclear and mitochondrial genomes, and from multiple isolates per species. Our multispecies coalescent approach using both Bayesian and maximum likelihood methods was able to estimate a moderately supported species tree showing a close relationship among P. infestans, P. andina, and P. ipomoeae. The topology of the species tree was also identical to the dominant phylogenetic history estimated in our third approach, Bayesian concordance analysis. Our results support previous suggestions that P. andina is a hybrid species, with P. infestans representing one parental lineage. The other parental lineage is not known, but represents an independent evolutionary lineage more closely related to P. ipomoeae. While all five species likely originated in the New World, further study is needed to determine when and under what conditions this hybridization event may have occurred.

  16. Middle atmosphere heating by exothermic chemical reactions involving odd-hydrogen species

    Science.gov (United States)

    Mlynczak, Martin G.; Solomon, Susan

    1991-01-01

    The rate of heating which occurs in the middle atmosphere due to four exothermic reactions involving members of the odd-hydrogen family is calculated. The following reactions are considered: O + OH yields O2 + H; H + O2 + M yields HO2 + M; H + O3 yields OH + O2; and O + HO2 yields OH + O2. It is shown that the heating rates due to these reactions rival the oxygen-related heating rates conventionally considered in middle-atmosphere models. The conversion of chemical potential energy into molecular translational energy (heat) by these odd-hydrogen reactions is shown to be a significant energy source in the middle atmosphere that has not been previously considered.

  17. Volcanic monitoring for radon and chemical species in the soil and in spring water samples

    Energy Technology Data Exchange (ETDEWEB)

    Segovia, N. E-mail: nurina@terra.com.mx; Armienta, M.A.; Valdes, C.; Mena, M.; Seidel, J.L.; Monnin, M.; Pena, P.; Lopez, M.B.E.; Reyes, A.V

    2003-06-01

    Soil radon has been monitored at two fixed stations in the northern flank of Popocatepetl Volcano, a high risk volcano located 60 km SE from Mexico City. Water samples from three springs were also studied for radon as well as major and trace elements. Radon in the soil was recorded using track detectors. Radon in the water samples was evaluated using the liquid scintillation method and an Alphaguard. The major elements were determined through conventional chemical methods and trace elements using an ICP-MS equipment. Soil radon levels were low, indicating a moderate diffuse degassing through the flanks of the volcano. Groundwater radon had almost no relation with the eruptive stages. Water chemistry was stable in the reported time (2000-2002)

  18. Volcanic monitoring for radon and chemical species in the soil and in spring water samples

    International Nuclear Information System (INIS)

    Soil radon has been monitored at two fixed stations in the northern flank of Popocatepetl Volcano, a high risk volcano located 60 km SE from Mexico City. Water samples from three springs were also studied for radon as well as major and trace elements. Radon in the soil was recorded using track detectors. Radon in the water samples was evaluated using the liquid scintillation method and an Alphaguard. The major elements were determined through conventional chemical methods and trace elements using an ICP-MS equipment. Soil radon levels were low, indicating a moderate diffuse degassing through the flanks of the volcano. Groundwater radon had almost no relation with the eruptive stages. Water chemistry was stable in the reported time (2000-2002)

  19. Discrimination and chemical phylogenetic study of seven species of Dendrobium using infrared spectroscopy combined with cluster analysis

    Science.gov (United States)

    Luo, Congpei; He, Tao; Chun, Ze

    2013-04-01

    Dendrobium is a commonly used and precious herb in Traditional Chinese Medicine. The high biodiversity of Dendrobium and the therapeutic needs require tools for the correct and fast discrimination of different Dendrobium species. This study investigates Fourier transform infrared spectroscopy followed by cluster analysis for discrimination and chemical phylogenetic study of seven Dendrobium species. Despite the general pattern of the IR spectra, different intensities, shapes, peak positions were found in the IR spectra of these samples, especially in the range of 1800-800 cm-1. The second derivative transformation and alcoholic extracting procedure obviously enlarged the tiny spectral differences among these samples. The results indicated each Dendrobium species had a characteristic IR spectra profile, which could be used to discriminate them. The similarity coefficients among the samples were analyzed based on their second derivative IR spectra, which ranged from 0.7632 to 0.9700, among the seven Dendrobium species, and from 0.5163 to 0.9615, among the ethanol extracts. A dendrogram was constructed based on cluster analysis the IR spectra for studying the chemical phylogenetic relationships among the samples. The results indicated that D. denneanum and D. crepidatum could be the alternative resources to substitute D. chrysotoxum, D. officinale and D. nobile which were officially recorded in Chinese Pharmacopoeia. In conclusion, with the advantages of high resolution, speediness and convenience, the experimental approach can successfully discriminate and construct the chemical phylogenetic relationships of the seven Dendrobium species.

  20. Divergence in gene expression within and between two closely related flycatcher species.

    Science.gov (United States)

    Uebbing, Severin; Künstner, Axel; Mäkinen, Hannu; Backström, Niclas; Bolivar, Paulina; Burri, Reto; Dutoit, Ludovic; Mugal, Carina F; Nater, Alexander; Aken, Bronwen; Flicek, Paul; Martin, Fergal J; Searle, Stephen M J; Ellegren, Hans

    2016-05-01

    Relatively little is known about the character of gene expression evolution as species diverge. It is for instance unclear if gene expression generally evolves in a clock-like manner (by stabilizing selection or neutral evolution) or if there are frequent episodes of directional selection. To gain insights into the evolutionary divergence of gene expression, we sequenced and compared the transcriptomes of multiple organs from population samples of collared (Ficedula albicollis) and pied flycatchers (F. hypoleuca), two species which diverged less than one million years ago. Ordination analysis separated samples by organ rather than by species. Organs differed in their degrees of expression variance within species and expression divergence between species. Variance was negatively correlated with expression breadth and protein interactivity, suggesting that pleiotropic constraints reduce gene expression variance within species. Variance was correlated with between-species divergence, consistent with a pattern expected from stabilizing selection and neutral evolution. Using an expression PST approach, we identified genes differentially expressed between species and found 16 genes uniquely expressed in one of the species. For one of these, DPP7, uniquely expressed in collared flycatcher, the absence of expression in pied flycatcher could be associated with a ≈20-kb deletion including 11 of 13 exons. This study of a young vertebrate speciation model system expands our knowledge of how gene expression evolves as natural populations become reproductively isolated. PMID:26928872

  1. Determining High-Quality Critical Body Residues for Multiple Species and Chemicals by Applying Improved Experimental Design and Data Interpretation Concepts

    DEFF Research Database (Denmark)

    van der Heijden, Stephan A.; Hermens, Joop L. M.; Sinnige, Theo L.;

    2015-01-01

    , and by a factor of 2.6 between the three species but for individual chemicals. Accounting for the chemicals internal distribution to different partitioning domains and relating effects to estimated concentrations in the target compartment (i.e., membrane lipids) was expected to but did not decrease the overall......Ecotoxicological effect data are generally expressed as effective concentrations in the external exposure medium and do thus not account for differences in chemical uptake, bioavailability, and metabolism, which can introduce substantial data variation. The Critical Body Residue (CBR) concept...... provides clear advantages, because it links effects directly to the internal exposure. Using CBRs instead of external concentrations should therefore reduce variability. For compounds that act via narcosis even a constant CBR has been proposed. Despite the expected uniformity, CBR values...

  2. The relative toxicities of several pesticides to naiads of three species of stoneflies

    Science.gov (United States)

    Sanders, Herman O.; Cope, Oliver B.

    1968-01-01

    Static bioassays were conducted to determine the relative acute toxicities of some insecticides, herbicides, fungicides, a defoliant, and a molluscicide to the naiads of three species of stonef!y, Pteronarcys califomica, Pteronarcella badia, and Claassenia sabulosa. Toxic effects were measured by determination of median lethal concn (Lcoo) for 24-, 48-, and 96-hr exposures, at 15.5C. Endrin and dieldrin were the most and DDT the least toxic of the chlorinated hydrocarbon insecticides tested. Parathion was the most toxic organophosphate insecticide to P. califomica naiads, but dursban was the most toxic to P. badia and C. sabulosa naiads. Trichlorofon ( Dipterex) was the least toxic to all three species. P. badia, the species of smallest size, was the species most susceptible to most pesticides, followed in descending order of sensitivity by C. sabulosa and P. califomica. Smaller specimens of P. californica naiads were consistently more susceptible to some insecticides than larger specimens of the same species.

  3. Natural background levels and threshold values of chemical species in three large-scale groundwater bodies in Northern Italy

    Energy Technology Data Exchange (ETDEWEB)

    Molinari, Antonio, E-mail: ant.molinari2002@libero.it [Politecnico di Milano, Dipartimento di Ingegneria Idraulica, Ambientale, Infrastrutture Viarie e Rilevamento, Piazza L. Da Vinci, 32-20133 Milano (Italy); Guadagnini, Laura [Politecnico di Milano, Dipartimento di Ingegneria Idraulica, Ambientale, Infrastrutture Viarie e Rilevamento, Piazza L. Da Vinci, 32-20133 Milano (Italy); Marcaccio, Marco [ARPA Emilia-Romagna, Direzione Tecnica, Largo Caduti del Lavoro, 6-40122 Bologna (Italy); Guadagnini, Alberto [Politecnico di Milano, Dipartimento di Ingegneria Idraulica, Ambientale, Infrastrutture Viarie e Rilevamento, Piazza L. Da Vinci, 32-20133 Milano (Italy)

    2012-05-15

    We analyze natural background levels (NBLs) and threshold values (TVs) of spatially distributed chemical species (NH{sub 4}, B and As) which may be a potential pressure and concern in three large scale alluvial and fluvio-deltaic aquifers at different depths of the Apennines and Po river plains in Emilia-Romagna, Northern Italy. Our results are based on statistical methodologies designed to separate the natural and anthropogenic contributions in monitored concentrations by modeling the empirical distribution of the detected concentration with a mixture of probability density functions. Available chemical observations are taken over a 20 years period and are associated with different depths and cover planar investigation scales of the order of hundreds of kilometers. High concentration values detected for NH{sub 4} and B appear to be related to high natural background levels. Due to interaction with the host rock in different geochemical environments we observed that concentration vary in time and space (including in depth) consistently with the hydrogeochemical features and the occurrence of natural attenuation mechanisms in the analyzed reservoirs. Conversely, estimated As NBLs are not consistent with the conceptual model of the hydrogeochemical behavior of the systems analyzed and experimental evidences of As content in aquifer cores. This is due to the inability of these techniques to incorporate the complex dynamics of the processes associated with the specific hydrogeochemical setting. Statistical analyses performed upon aggregating the concentration data according to different time observation windows allow identifying temporal dynamics of NBLs and TVs of target compounds within the observation time frame. Our results highlight the benefit of a dynamic monitoring process and analysis of well demarcated groundwater bodies to update the associated NBLs as a function of the temporal dependence of natural processes occurring in the subsurface. Monitoring

  4. Chemical species of metallic elements in the aquatic environment of an ex-mining catchment.

    Science.gov (United States)

    Ashraf, Muhammad Aqeel; Ahmad, Mushtaq; Akib, Shatirah; Balkhair, Khaled S; Abu Bakar, Nor Kartini

    2014-08-01

    This study was conducted to investigate the chemical speciation of dissolved and particulate elements (lead, zinc, copper, chromium, arsenic, and tin) in the mining wastewater of a former tin-mining catchment. The speciation patterns of dissolved elements were estimated by an adsorptive stripping voltammeter (ASV), while particulate elements were analyzed by using a newly developed sequential-extraction leaching procedure. The procedure has been operationally defined among five host fractions, namely exchangeable, carbonate, reducible, organic bound, and residual fractions. A total of six elements (lead, zinc, copper, chromium, arsenic, and tin) were analyzed in thirty samples at ten locations (P1-P10), with three samples taken from each of the ten locations, to get the average value from the former tin-mining catchment. The results showed that the heavy metal pollutions in locations P4 and P8 were more severe than in other sampling sites, especially tin and lead pollution. In the water samples from locations P4 and P8, both the total contents and the most dangerous non-residual fractions of tin and lead were extremely high. More than 90% of the total concentrations of arsenic and chromium existed in the residual fraction. Concentrations of copper and zinc mainly occurred in the residual fraction (more than 60%), while lead and tin presented mostly in the non-residual fractions in surface water. For all of the six dissolved elements, the less-labile species formed the predominant fraction in their speciation patterns. The speciation patterns of particulate elements showed that most of the concentrations of zinc, copper, chromium, and arsenic were found in the reducible fraction; whereas lead and tin were mainly associated with the organic fraction. PMID:25306787

  5. Evaluation of morphological and chemical aspects of different wood species by spectroscopy and thermal methods

    Science.gov (United States)

    Popescu, Maria-Cristina; Popescu, Carmen-Mihaela; Lisa, Gabriela; Sakata, Yusaku

    2011-03-01

    The aim of this study is to find the most convenient procedure to make an easy differentiation between various kinds of wood. The wood samples used were: fir (Acer alba), poplar (Populus tremula), lime (Tillia cordata), sycamore (Acer pseudoplatanus), sweet cherry (Prunus avium), hornbeam (Carpinus betulus), walnut (Juglans regia), beech (Fagus sylvatica), oak (Quercus robur). The methods of investigation used were FT-IR spectroscopy, X-ray diffraction and thermogravimetry. By FT-IR spectroscopy, was observed that the ratio values of lignin/carbohydrate IR bands for wood decreases with increasing the average wood density, showing a decrease in lignin content. Also, the calculated values of lignin percentage from the FT-IR spectra are in very good correlation with the values from literature. Following the deconvolution process of the X-ray diffraction patterns, it was found that the degree of crystallinity, the apparent lateral crystallite size, the proportion of crystallite interior chains and cellulose fraction tend to increase with increasing of the wood density. Thermal analysis is able to give information about degradation temperatures for the principal components of different wood samples. The shape of DTG curves depends on the wood species that cause the enlargement of the peaks or the maxima of the decomposition step varies at larger or smaller temperatures ranges. The temperatures and weight loss percentage are particular for each kind of wood. This study showed that analytical methods used have the potential to be important sources of information for a quick evaluation of the chemical composition of wood samples.

  6. Spatial variation of PM 2.5 chemical species and source-apportioned mass concentrations in New York City

    Science.gov (United States)

    Ito, Kazuhiko; Xue, Nan; Thurston, George

    2004-10-01

    Particulate matter (PM) is a chemically non-specific pollutant, and may originate or be derived from different emission source types. Thus, its toxicity may well vary depending on its chemical composition. If the PM toxicity could be determined based on source types, the regulation of PM may be implemented more effectively. A large number of monitors began collecting PM less than 2.5 μm in diameter (PM2.5) mass samples for subsequent chemical speciation starting 2000-2001 in the US. The data from this chemical speciation network can be useful for source-oriented evaluations of PM health effects. However, there are several issues that need to be considered in the analysis and interpretation of these data. One major issue is a monitor's representation of regional, sub-regional, and local air pollution exposures to the population in a city or metropolitan area. Because health outcomes in time-series air pollution epidemiological studies are aggregated over a wide geographical area, regional PM pollution may have smaller errors in exposure estimates than more spatially varying local pollution. However, the relative strength of association between source-apportioned PM and health outcomes may not be interpretable as the relative causal role of the source types. To our knowledge, there has not yet been a systematic and quantitative evaluation of this issue. In this study, we attempt to evaluate this issue by analyzing newly available PM2.5 speciation data from three monitors (a few miles apart) in New York City during 2001-2002. The strongest temporal correlations across the three monitors were found for the individual PM components that are related to secondary aerosols (e.g., S, NH4). We also conducted source-apportionment of the data using absolute principal component analysis and positive matrix factorization. We identified four major source/pollution types: (1) secondary (largely regional) aerosols; (2) soil; (3) traffic-related; and (4) residual oil burning

  7. Tree Species Traits Influence Soil Physical, Chemical, and Biological Properties in High Elevation Forests

    OpenAIRE

    Ayres, Edward; Steltzer, Heidi; Berg, Sarah; Wallenstein, Matthew D.; Simmons, Breana L.; Wall, Diana H

    2009-01-01

    Background Previous studies have shown that plants often have species-specific effects on soil properties. In high elevation forests in the Southern Rocky Mountains, North America, areas that are dominated by a single tree species are often adjacent to areas dominated by another tree species. Here, we assessed soil properties beneath adjacent stands of trembling aspen, lodgepole pine, and Engelmann spruce, which are dominant tree species in this region and are distributed widely in North Amer...

  8. The Rules of Aggression: How Genetic, Chemical and Spatial Factors Affect Intercolony Fights in a Dominant Species, the Mediterranean Acrobat Ant Crematogaster scutellaris.

    Directory of Open Access Journals (Sweden)

    Filippo Frizzi

    Full Text Available Nest-mate recognition plays a key role in the biology of ants. Although individuals coming from a foreign nest are, in most cases, promptly rejected, the degree of aggressiveness towards non nest-mates may be highly variable among species and relies on genetic, chemical and environmental factors. We analyzed intraspecific relationships among neighboring colonies of the dominant Mediterranean acrobat ant Crematogaster scutellaris integrating genetic, chemical and behavioral analyses. Colony structure, parental relationships between nests, cuticular hydrocarbons profiles (CHCs and aggressive behavior against non nest-mates were studied in 34 nests located in olive tree trunks. Bayesian clustering analysis of allelic variation at nine species-specific microsatellite DNA markers pooled nests into 14 distinct clusters, each representing a single colony, confirming a polydomous arrangement of nests in this species. A marked genetic separation among colonies was also detected, probably due to long distance dispersion of queens and males during nuptial flights. CHCs profiles varied significantly among colonies and between nests of the same colony. No relationship between CHCs profiles and genetic distances was detected. The level of aggressiveness between colonies was inversely related to chemical and spatial distance, suggesting a 'nasty neighbor' effect. Our findings also suggest that CHCs profiles in C. scutellaris may be linked to external environmental factors rather than genetic relationships.

  9. Intercontinental chemical variation in the invasive ant Wasmannia auropunctata (Roger) (Hymenoptera Formicidae): a key to the invasive success of a tramp species

    Science.gov (United States)

    Errard, Christine; Delabie, Jacques; Jourdan, Hervé; Hefetz, Abraham

    2005-07-01

    Unicoloniality emerges as a feature that characterizes successful invasive species. Its underlying mechanism is reduced intraspecific aggression while keeping interspecific competitiveness. To that effect, we present here a comparative behavioural and chemical study of the invasive ant Wasmannia auropunctata in parts of its native and introduced ranges. We tested the hypothesis that introduced populations (New Caledonia archipelago) have reduced intraspecific aggression relative to native populations (e.g., Ilhéus area, Brazil) and that this correlates with reduced variability in cuticular hydrocarbons (CHCs). As predicted, there was high intraspecific aggression in the Brazilian populations, but no intraspecific aggression among the New Caledonian populations. However, New Caledonian worker W. auropunctata remained highly aggressive towards ants of other invasive species. The chemical data corresponded with the behaviour. While CHCs of ants from the regions of Brazil diverged, the profiles of ants from various localities in New Caledonia showed high uniformity. We suggest that in New Caledonia W. auropunctata appears to behave as a single supercolony, whereas in its native range it acts as a multicolonial species. The uniformity of recognition cues in the New Caledonia ants may reflect a process whereby recognition alleles became fixed in the population, but may also be the consequence of a single introduction event and subsequent aggressive invasion of the ecosystem. Chemical uniformity coupled with low intraspecific but high interspecific aggression, lend credence to the latter hypothesis.

  10. The Rules of Aggression: How Genetic, Chemical and Spatial Factors Affect Intercolony Fights in a Dominant Species, the Mediterranean Acrobat Ant Crematogaster scutellaris.

    Science.gov (United States)

    Frizzi, Filippo; Ciofi, Claudio; Dapporto, Leonardo; Natali, Chiara; Chelazzi, Guido; Turillazzi, Stefano; Santini, Giacomo

    2015-01-01

    Nest-mate recognition plays a key role in the biology of ants. Although individuals coming from a foreign nest are, in most cases, promptly rejected, the degree of aggressiveness towards non nest-mates may be highly variable among species and relies on genetic, chemical and environmental factors. We analyzed intraspecific relationships among neighboring colonies of the dominant Mediterranean acrobat ant Crematogaster scutellaris integrating genetic, chemical and behavioral analyses. Colony structure, parental relationships between nests, cuticular hydrocarbons profiles (CHCs) and aggressive behavior against non nest-mates were studied in 34 nests located in olive tree trunks. Bayesian clustering analysis of allelic variation at nine species-specific microsatellite DNA markers pooled nests into 14 distinct clusters, each representing a single colony, confirming a polydomous arrangement of nests in this species. A marked genetic separation among colonies was also detected, probably due to long distance dispersion of queens and males during nuptial flights. CHCs profiles varied significantly among colonies and between nests of the same colony. No relationship between CHCs profiles and genetic distances was detected. The level of aggressiveness between colonies was inversely related to chemical and spatial distance, suggesting a 'nasty neighbor' effect. Our findings also suggest that CHCs profiles in C. scutellaris may be linked to external environmental factors rather than genetic relationships. PMID:26445245

  11. Natural background levels and threshold values of chemical species in three large-scale groundwater bodies in Northern Italy.

    Science.gov (United States)

    Molinari, Antonio; Guadagnini, Laura; Marcaccio, Marco; Guadagnini, Alberto

    2012-05-15

    We analyze natural background levels (NBLs) and threshold values (TVs) of spatially distributed chemical species (NH(4), B and As) which may be a potential pressure and concern in three large scale alluvial and fluvio-deltaic aquifers at different depths of the Apennines and Po river plains in Emilia-Romagna, Northern Italy. Our results are based on statistical methodologies designed to separate the natural and anthropogenic contributions in monitored concentrations by modeling the empirical distribution of the detected concentration with a mixture of probability density functions. Available chemical observations are taken over a 20 years period and are associated with different depths and cover planar investigation scales of the order of hundreds of kilometers. High concentration values detected for NH(4) and B appear to be related to high natural background levels. Due to interaction with the host rock in different geochemical environments we observed that concentration vary in time and space (including in depth) consistently with the hydrogeochemical features and the occurrence of natural attenuation mechanisms in the analyzed reservoirs. Conversely, estimated As NBLs are not consistent with the conceptual model of the hydrogeochemical behavior of the systems analyzed and experimental evidences of As content in aquifer cores. This is due to the inability of these techniques to incorporate the complex dynamics of the processes associated with the specific hydrogeochemical setting. Statistical analyses performed upon aggregating the concentration data according to different time observation windows allow identifying temporal dynamics of NBLs and TVs of target compounds within the observation time frame. Our results highlight the benefit of a dynamic monitoring process and analysis of well demarcated groundwater bodies to update the associated NBLs as a function of the temporal dependence of natural processes occurring in the subsurface. Monitoring protocols could

  12. ANALYSIS OF CHEMICAL COMPOUNDS OF AGARWOOD OIL FROM DIFFERENT SPECIES BY GAS CHROMATOGRAPHY MASS SPECTROMETRY (GCMS

    Directory of Open Access Journals (Sweden)

    Yumi Zuhanis Has-Yun Hashim

    2014-05-01

    Full Text Available ABSTRACT: Agarwood oil is a highly prized type of oil due to its unique aroma. The oil is extracted from the fragrant resin found in the agarwood tree (trunk.  The unique aroma and quality of agarwood resin and oil are contributed by the presence of certain chemical compounds. In this work, analysis and comparison of the chemical compounds of agarwood oil from A. malaccensis, A. sub-integra and a mixture of both were conducted.  The essential oils were diluted in hexane (5% prior to gas chromatography mass spectrometry (GCMS analysis performed using Agilent GCMS 7890A coupled with MSD quadrupole detector 5975 C.  Separation of analytes by gas chromatography was carried out using a Hewlett Packard HP-5MS silica capillary column (30 m X 0.25 mm X 0.25 mm. A total of 107 compounds were identified from the three samples of agarwood oils. Fifty-five (55 components were identified in A. malaccensis sample which contributes to the largest portion of the total compounds. About 20% of the compounds identified were aromatic and sesquiterpenes which have been revealed to be the main active compounds of agarwood oils which also give the aroma and pleasant odour of agarwood. Different compositions or profile of chemical components were found in agarwood oils from the two different species. Two compounds were commonly identified in all three samples namely 3-phenyl-2-butanone and alpha-cubebene.  Further studies are needed to refine the results which later can be used to assist detection and authentication of agarwood as well as its scientific-based grading. ABSTRAK: Minyak gaharu merupakan sejenis minyak beraroma unik yang mendapat permintaan tinggi dan mahal. Minyak ini diekstrak daripada resin beraroma yang terbentuk di dalam batang pokok gaharu. Keunikan aroma dan kualiti resin dan minyak gaharu ini bergantung kepada kehadiran bahan kimia tertentu. Penyelidikan ini menjurus kepada analisis dan perbandingan bahan-bahan kimia yang terdapat dalam minyak

  13. Chemical vapor generation of silver for atomic absorption spectrometry with the multiatomizer: Radiotracer efficiency study and characterization of silver species

    International Nuclear Information System (INIS)

    Volatile Ag species were generated in flow injection arrangement from nitric acid environment in the presence of surfactants (Triton X-100 and Antifoam B) and permanent Pd deposits as the reaction modifiers. Atomic absorption spectrometry (AAS) with multiple microflame quartz tube atomizer heated to 900 deg. C was used for atomization; evidence was found for thermal mechanism of atomization. Relative and absolute limits of detection (3σ, 250 μl sample loop) measured under optimized conditions were: 1.4 μg l-1 and 0.35 ng, respectively. The efficiency of chemical vapor generation (CVG) as well as spatial distribution of residual analyte in the apparatus was studied by 111Ag radioactive indicator (half-life 7.45 days) of high specific activity. It was found out that 23% of analyte was released into the gaseous phase. However, only 8% was found on filters placed at the entrance to the atomizer due to transport losses. About 40% of analyte remained in waste liquid, whereas the rest was found deposited over the CVG system. Presented study follows the hypothesis that the 'volatile' Ag species are actually metallic nanoparticles formed upon reduction in liquid phase and then released with good efficiency to the gaseous phase. Number/charge size distributions of dry aerosol were determined by Scanning Mobility Particle Sizer. Ag was detected in 40-45 nm particles holding 10 times more charge if compared to Boltzmann equilibrium. At the same time, Ag was also present on 150 nm particles, the main size mode of the CVG generator. The increase of Ag in standards was reflected by proportional increase in particle number/charge for 40-45 nm size particles only. Transmission electron microscopy revealed particles of 8 ± 2 nm sampled from the gaseous phase, which were associated in isolated clusters of few to few tens of nanometres. Ag presence in those particles was confirmed by Energy Dispersive X-ray Spectroscopy (EDS) analysis.

  14. The phylogeny of closely related species as revealed by the genealogy of a speciation gene, Odysseus

    OpenAIRE

    Ting, Chau-Ti; Tsaur, Shun-Chern; Wu, Chung-I

    2000-01-01

    Molecular differentiation between races or closely related species is often incongruent with the reproductive divergence of the taxa of interest. Shared ancient polymorphism and/or introgression during secondary contact may be responsible for the incongruence. At loci contributing to speciation, these two complications should be minimized (1, 2); hence, their variation may more faithfully reflect the history of the species' reproductive differentiation. In this study, we analyzed DNA polymorp...

  15. Multiplex PCR for the Detection of Lactobacillus pontis and Two Related Species in a Sourdough Fermentation

    OpenAIRE

    Müller, Martin R. A.; Ehrmann, Matthias A.; Vogel, Rudi F.

    2000-01-01

    A specific multiplex PCR assay based on the amplification of parts of the 16S rRNA molecule was designed. Primers derived from variable regions of the 16S rRNA provided a means of easily differentiating the species Lactobacillus pontis and Lactobacillus panis. They could be clearly discriminated from the phylogenetically related species Lactobacillus vaginalis, Lactobacillus oris, and Lactobacillus reuteri and from other lactobacilli commonly known to be present in sourdough. Other strains is...

  16. Sensory development and its relation to habitat change in three species of sciaenids.

    Science.gov (United States)

    Poling, K R; Fuiman, L A

    1998-01-01

    Visual and mechanosensory development of three sciaenid species was investigated to examine possible correlations between sensory morphology and patterns of habitat use. Although the three species have different migration patterns as early larvae, few differences in sensory morphology occurred between species until late in the larval period. Atlantic croaker, Micropogonias undulatus, were distinguished by enhancements of visual morphology (large eyes, abundant photoreceptors, and best summation of the three species). Croaker arrive inshore later in the larval period and, after settlement, appear to use deeper water habitats than do the other two species. Spotted seatrout, Cynoscion nebulosus, had the fewest enhancements of visual morphology but had more free neuromasts than the other two species late in the larval period. After settlement, seatrout are primarily associated with seagrass habitats. Red drum, Sciaenops ocellatus, did not have pronounced specialization of one sensory system, as did the other two species. For part of the larval period, neuromast numbers were higher in red drum than in the other two species. Later, enhancements of visual morphology did occur, but only eye and lens size were the same as those of Atlantic croaker. Red drum larvae appear to use a wider variety of habitats than do the other two species. In none of the species examined did sensory changes correlate with offshore to inshore movements, and only initial rod formation occurred prior to settlement. Distinct sensory changes did not occur concurrent with habitat changes, probably due to constructional and phylogenetic constraints. Rather, sensory differences are related to the environmental conditions in the predominant inshore habitat occupied by each species after settlement, when morphological limitations are less severe. PMID:9807012

  17. Chemical Compositions of RV Tauri Stars and Related Objects

    CERN Document Server

    Rao, S Sumangala

    2013-01-01

    We have undertaken a comprehensive abundance analysis for a sample of relatively unexplored RV Tauri and RV Tauri like stars to further our understanding of post-Asymptotic Giant Branch (post-AGB) evolution. From our study based on high resolution spectra and grid of model atmospheres, we find indications of mild s-processing for V820 Cen and IRAS 06165+3158. On the other hand, SU Gem and BT Lac exhibit the effects of mild dust-gas winnowing. We have also compiled the existing abundance data on RV Tauri objects and find that a large fraction of them are afflicted by dust-gas winnowing and now added by the present work, we find a small group of two RV Tauris showing mild s-process enhancement in our Galaxy. With two out of three reported s-process enhanced objects belonging to RV Tauri spectroscopic class C, these intrinsically metal-poor objects appear to be promising candidates to analyse the possible s-processing in RV Tauri stars.

  18. Evidence for nonallopatric speciation among closely related sympatric Heliotropium species in the Atacama Desert.

    Science.gov (United States)

    Luebert, Federico; Jacobs, Pit; Hilger, Hartmut H; Muller, Ludo A H

    2014-02-01

    The genetic structure of populations of closely related, sympatric species may hold the signature of the geographical mode of the speciation process. In fully allopatric speciation, it is expected that genetic differentiation between species is homogeneously distributed across the genome. In nonallopatric speciation, the genomes may remain undifferentiated to a large extent. In this article, we analyzed the genetic structure of five sympatric species from the plant genus Heliotropium in the Atacama Desert. We used amplified fragment length polymorphisms (AFLPs) to characterize the genetic structure of these species and evaluate their genetic differentiation as well as the number of loci subject to positive selection using divergence outlier analysis (DOA). The five species form distinguishable groups in the genetic space, with zones of overlap, indicating that they are possibly not completely isolated. Among-species differentiation accounts for 35% of the total genetic differentiation (F ST = 0.35), and F ST between species pairs is positively correlated with phylogenetic distance. DOA suggests that few loci are subject to positive selection, which is in line with a scenario of nonallopatric speciation. These results support the idea that sympatric species of Heliotropium sect. Cochranea are under an ongoing speciation process, characterized by a fluctuation of population ranges in response to pulses of arid and humid periods during Quaternary times. PMID:24558582

  19. Do plant traits predict the competitive abilities of closely related species?

    Science.gov (United States)

    Schwartz, Lauren M; Gibson, David J; Young, Bryan G

    2015-01-01

    Invasive species are a threat to every ecosystem. There is a strong incentive to predict which species will become invasive before they become too widespread and unmanageable. Different approaches have been advocated to assess invasive species potential. These include examining plant functional traits, quantifying competitive ability and phylogenetic comparison. In this study, we conducted experiments based on the above approaches in a multi-year, temporally replicated, set of experiments to compare these assessment methods to determine the invasive potential of Japanese chaff flower (Achyranthes japonica). We compared plant traits and competitive ability of Japanese chaff flower with two agricultural invasive species, Palmer amaranth (Amaranthus palmeri) and tall waterhemp (Amaranthus tuberculatus), and one endangered plant species, bloodleaf (Iresine rhizomatosa), in the Amaranthaceae. Additionally, we assessed the invasive potential based on each of these approaches and determined the degree of agreement between them. A relatively conservative assessment integrating all three approaches would be that the competitive ability of closely related individuals with similar functional traits would share invasive potential. In a greenhouse experiment, each of the study species and soya beans were grown as monocultures and were evaluated to assess the drawdown of an aboveground (light) and a belowground (nitrogen) resource. In a field experiment, each study species was grown at varying densities per 15-cm-diameter pot with or without one or two soya bean plants, to simulate relative densities for soya beans grown in 38- and 76-cm-wide row spacing, respectively. In addition, Japanese chaff flower seedlings were planted either as un-manipulated seedlings or as a seedling cut back to the soil surface at the four-node stage (cut Japanese chaff flower) at which point seedlings have reached a perennial growth stage. The greenhouse experiment showed that each species drew down

  20. Transfer of complexed and dissociated ionic species at soft interfaces: a voltammetric study of chemical kinetic and diffusional effects.

    Science.gov (United States)

    Laborda, Eduardo; Olmos, José Manuel; Molina, Ángela

    2016-04-21

    A new transfer mechanism is considered in which two different ionic species of the same charge can be transferred across a soft interface while they interconvert with each other in the original phase through a homogeneous chemical reaction: the aqueous complexation-dissociation coupled to transfer (ACDT) mechanism. This can correspond to a free ion in aqueous solution in the presence of a neutral ligand that complexes it leading to a species that can be more or less lipophilic than the free ion. As a result, the transfer to the organic phase can be facilitated or hindered by the aqueous-phase chemical reaction. Rigorous and approximate explicit analytical solutions are derived for the study of the above mechanism via normal pulse voltammetry, derivative voltammetry and chronoamperometry at macrointerfaces. The solutions enable us to examine the process whatever the species' lipophilicity and diffusivity in each medium and the kinetics and thermodynamics of the chemical reaction in solution. Moreover, when the chemical reaction is at equilibrium, explicit expressions for cyclic voltammetry and square wave voltammetry are obtained. With this set of equations, the influence of different physicochemical phenomena on the voltammetric response is studied as well as the most suitable strategies to characterize them. PMID:27020610

  1. Modelling chemistry in aircraft plumes 2: the chemical conversion of NOx to reservoir species under different conditions

    International Nuclear Information System (INIS)

    An expanding plume model with chemistry has been used to study the chemical conversion of nitrogen oxides to reservoir species in aircraft plumes under various conditions. A plume from a B747 was studied, where the NOx emission index was 26.1 g kg-1. Several sensitivity tests were performed for emissions at 07 UT at 50oN under summer conditions. The amount of NOx remaining in the plume after 15 h was between 58 and 69%, assuming background concentrations of ozone and NOx ranging from 50 to 200 ppb and 50 to 200 ppt, respectively. A somewhat higher range in the chemical conversion of NOx was calculated when changing the temperature from 200 to 240 K. The remaining NOx in the plume increased to 90% in a study where the aircraft emissions were released in air masses already exposed to aircraft emissions some hours before. The rate of chemical conversion of NOx to reservoir species was highly dependent on the number of sunlit hours during the 15 h period. The diurnal, seasonal and latitudinal variations in the chemical conversion of NOx to reservoir species were studied. As a first approximation, the conversion rates can be used to modify the aircraft NOx emissions at cruise altitudes used in mesoscale models. (author)

  2. Reverse Pulse Voltammetry at Spherical and Disc Microelectrodes: Characterization of Homogeneous Chemical Equilibria and Their Impact on the Species Diffusivities

    International Nuclear Information System (INIS)

    The value of the electrochemical technique Reverse Pulse Voltammetry (RPV) for the characterization of chemical equilibria in solution is theoretically investigated. For this, the RPV response of the square scheme is studied at spherical and disc electrodes of any size assuming that the chemical reactions are at equilibrium. When the effective diffusion coefficients of the oxidized and reduced species are the same, analytical solutions are reported for both electrode geometries. Otherwise, a rigorous analytical solution is derived for spherical electrodes whereas the case of microdiscs is addressed by numerical simulations. The theory for the square scheme enables the study of the RPV response in very different situations, including the cases where the electrochemical and/or chemical transformations alter significantly the species diffusivity such as in electron transfer processes in room temperature ionic liquids or in the association of the electroactive species with (bio) macromolecules and nanoparticles. It is found that, when medium-size (disc or spherical) microelectrodes are employed, the RPV method enables the simultaneous determination of the effective diffusion coefficients of the oxidized and reduced species as well as the apparent formal potential. These magnitudes make it possible a sound physicochemical characterization of the system

  3. Glacier mass balance reconstruction by sublimation induced enrichment of chemical species on Cerro Tapado (Chilean Andes

    Directory of Open Access Journals (Sweden)

    P. Ginot

    2006-01-01

    Full Text Available A 36 m long ice core down to bedrock from the Cerro Tapado glacier (5536 m a.s.l, 30°08' S, 69°55' W was analyzed to reconstruct past climatic conditions for Northern Chile. Because of the marked seasonality in the precipitation (short wet winter and extended dry summer periods in this region, major snow ablation and related post-depositional processes occur on the glacier surface during summer periods. They include predominantly sublimation and dry deposition. Assuming that, like measured during the field campaign, the enrichment of chloride was always related to sublimation, the chemical record along the ice core may be applied to reconstruct the history of such secondary processes linked to the past climatic conditions over northern Chile. For the time period 1962–1999, a mean annual net accumulation of 316 mm water equivalent (weq and 327 mm weq loss by sublimation was deduced by this method. This corresponds to an initial total annual accumulation of 539 mm weq. The annual variability of the accumulation and sublimation is related with the Southern Oscillation Index (SOI: higher net-accumulation during El-Niño years and more sublimation during La Niña years. The deepest part of the ice record shows a time discontinuity; with an ice body deposited under different climatic conditions: 290 mm higher precipitation but with reduced seasonal distribution (+470 mm in winter and –180 mm in summer and –3°C lower mean annual temperature. Unfortunately, its age is unknown. The comparison with regional proxy data however let us conclude that the glacier buildup did most likely occur after the dry mid-Holocene.

  4. Chemical Species in the Vapor Phase of Hanford Double-Shell Tanks: Potential Impacts on Waste Tank Corrosion Processes

    Energy Technology Data Exchange (ETDEWEB)

    Felmy, Andrew R.; Qafoku, Odeta; Arey, Bruce W.; Boomer, Kayle D.

    2010-09-22

    The presence of corrosive and inhibiting chemicals on the tank walls in the vapor space, arising from the waste supernatant, dictate the type and degree of corrosion that occurs there. An understanding of how waste chemicals are transported to the walls and the affect on vapor species from changing supernatant chemistry (e.g., pH, etc.), are basic to the evaluation of risks and impacts of waste changes on vapor space corrosion (VSC). In order to address these issues the expert panel workshop on double-shell tank (DST) vapor space corrosion testing (RPP-RPT-31129) participants made several recommendations on the future data and modeling needs in the area of DST corrosion. In particular, the drying of vapor phase condensates or supernatants can form salt or other deposits at the carbon steel interface resulting in a chemical composition at the near surface substantially different from that observed directly in the condensates or the supernatants. As a result, over the past three years chemical modeling and experimental studies have been performed on DST supernatants and condensates to predict the changes in chemical composition that might occur as condensates or supernatants equilibrate with the vapor space species and dry at the carbon steel surface. The experimental studies included research on both the chemical changes that occurred as the supernatants dried as well as research on how these chemical changes impact the corrosion of tank steels. The chemical modeling and associated experimental studies were performed at the Pacific Northwest National Laboratory (PNNL) and the research on tank steel corrosion at the Savannah River National Laboratory (SRNL). This report presents a summary of the research conducted at PNNL with special emphasis on the most recent studies conducted in FY10. An overall summary of the project results as well as their broader implications for vapor space corrosion of the DST’s is given at the end of this report.

  5. Chemical composition fluctuations in roots of Plumbago scandens L. in relation to floral development

    Directory of Open Access Journals (Sweden)

    Selma R. Paiva

    2011-12-01

    Full Text Available Plumbago scandens L. is a Brazilian tropical/subtropical species that occurs along the coast. Chemically it is mainly represented by naphthoquinones, flavonoids, terpenoids and steroids. The aim of the present work is to study quantitative changes in the root metabolic production of Plumbago scandens during different physiologic developmental stages relative to floration. The results indicated the presence of four substances in the extracts: plumbagin, epi-isoshinanolone, palmitic acid and sitosterol, independent on developmental stage. The naphthoquinone plumbagin has always showed to be the major component of all extracts. Naphthoquinones exhibited their highest content during floration, while the content of the two others components decreased during this stage, revealing an inverse profile. The chemical composition changed depending on the plant requirements.Plumbago scandens L. é uma espécie brasileira tropical/subtropical que ocorre ao longo da costa. Quimicamente, é principalmente representada por naftoquinonas, flavonóides, terpenóides e esteróides. objetivo do presente trabalho é estudar mudanças quantitativas da produção metabólica nas raízes de Plumbago scandens durante diferentes estágios de desenvolvimento fisiológico, relativos à floração. Os resultados indicaram a presença de quatro substâncias nos extratos: plumbagina, epi-isoshinanolona, ácido palmítico e sitosterol, independente do estágio de desenvolvimento. A naftoquinona plumbagina tem sempre mostrado ser o componente majoritário de todos os extratos. Naftoquinonas exibiram seus maiores conteúdos durante a floração, enquanto o conteúdo dos dois outros componentes decresceu durante este estágio, revelando um perfil inverso. A composição química modificou dependendo das necessidades da planta.

  6. Patterns of tree species diversity in relation to climatic factors on the Sierra Madre Occidental, Mexico.

    Science.gov (United States)

    Silva-Flores, Ramón; Pérez-Verdín, Gustavo; Wehenkel, Christian

    2014-01-01

    Biological diversity can be defined as variability among living organisms from all sources, including terrestrial organisms, marine and other aquatic ecosystems, and the ecological complexes which they are part of. This includes diversity within species, between species, and of ecosystems. Numerous diversity indices combine richness and evenness in a single expression, and several climate-based explanations have been proposed to explain broad-scale diversity patterns. However, climate-based water-energy dynamics appears to be an essential factor that determines patterns of diversity. The Mexican Sierra Madre Occidental occupies an area of about 29 million hectares and is located between the Neotropical and Holarctic ecozones. It shelters a high diversity of flora, including 24 different species of Pinus (ca. 22% on the whole), 54 species of Quercus (ca. 9-14%), 7 species of Arbutus (ca. 50%) and many other trees species. The objectives of this study were to model how tree species diversity is related to climatic and geographic factors and stand density and to test the Metabolic Theory, Productivity-Diversity Hypothesis, Physiological Tolerance Hypothesis, Mid-Domain Effect, and the Water-Energy Dynamic Theory on the Sierra Madre Occidental, Durango. The results supported the Productivity-Diversity Hypothesis, Physiological Tolerance Hypothesis and Water-Energy Dynamic Theory, but not the Mid-Domain Effect or Metabolic Theory. The annual aridity index was the variable most closely related to the diversity indices analyzed. Contemporary climate was found to have moderate to strong effects on the minimum, median and maximum tree species diversity. Because water-energy dynamics provided a satisfactory explanation for the patterns of minimum, median and maximum diversity, an understanding of this factor is critical to future biodiversity research. Quantile regression of the data showed that the three diversity parameters of tree species are generally higher in cold

  7. Significant differences in alkaloid content of Coptis chinensis (Huanglian, from its related American species

    Directory of Open Access Journals (Sweden)

    Skeels Matthew

    2009-08-01

    Full Text Available Abstract Background The growing popularity of Chinese herbal medicine in the United States has prompted large-scale import of raw herbs from Asia. Many of the Asian herbs have phylogenetically related North American species. We compared three phylogenetically related species, namely Coptis chinensis (Huanglian, Hydrastis canadensis and Coptis trifolia to show whether they can be substituted by one another in terms of alkaloid content. Methods We used microwave assisted extraction to obtain alkaloids berberine, coptisine, palmatine and hydrastine. High performance liquid chromatography (HPLC was used to quantify each alkaloid. Results Hydrastis canadensis has the most berberine, whereas Coptis trifolia has the most coptisine. Hydrastine and palmatine were unique to Hydrastis canadensis and Coptis chinensis respectively. Conclusion Neither Hydrastis canadensis nor Coptis trifolia contains all the alkaloids found in Coptis chinensis used in Chinese medicine. Substitutes of this Chinese species by its American relatives are not recommended.

  8. PCR amplification of repetitive sequences as a possible approach in relative species quantification

    DEFF Research Database (Denmark)

    Ballin, Nicolai Zederkopff; Vogensen, Finn Kvist; Karlsson, Anders H

    2012-01-01

    in binary mixtures. PCR LUX primers were designed that amplify repetitive and single copy sequences to establish the species dependent number (constants) (SDC) of amplified repetitive sequences per genome. The SDCs and data from amplification of repetitive sequences were tested for their...... repetitive sequences is therefore frequently used in absolute quantification but problems occur in relative quantification as the number of repetitive sequences is unknown. A promising approach was developed where data from amplification of repetitive sequences were used in relative quantification of species...... applicability to relatively quantify the amount of chicken DNA in a binary mixture of chicken DNA and pig DNA. However, the designed PCR primers lack the specificity required for regulatory species control....

  9. Comparison of two freshwater turtle species as monitors of radionuclide and chemical contamination: DNA damage and residue analysis

    International Nuclear Information System (INIS)

    Two species of turtles that occupy different ecological niches were compared for their usefulness as monitors of freshwater ecosystems where both low-level radioactive and nonradioactive contaminants are present. The pond slider (Trachemys scripta) and common snapping turtle (Chelydra serpentina) were analyzed for the presence of 90Sr, 137Cs, 60Co, and Hg, radionuclides and chemicals known to be present at the contaminated site, and single-strand breaks in liver DNA. The integrity of the DNA was examined by the alkaline unwinding assay, a technique that detects strand breaks as a biological marker of possible exposure to genotoxic agents. This measure of DNA damage was significantly increased in both species of turtles at the contaminated site compared with turtles of the same species at a reference site, and shows that contaminant-exposed populations were under more severe genotoxic stress than those at the reference site. The level of strand breaks observed at the contaminated site was high and in the range reported for other aquatic species exposed to deleterious concentrations of genotoxic agents such as chemicals and ionizing radiation. Statistically significantly higher concentrations of radionuclides and Hg were detected in the turtles from the contaminated area. Mercury concentrations were significantly higher in the more carnivorous snapping turtle compared with the slider; however, both species were effective monitors of the contaminants

  10. BioCreative V CDR task corpus: a resource for chemical disease relation extraction

    OpenAIRE

    Li, Jiao; Sun, Yueping; Johnson, Robin J.; Sciaky, Daniela; Wei, Chih-Hsuan; Leaman, Robert; Davis, Allan Peter; Mattingly, Carolyn J.; Wiegers, Thomas C.; Lu, Zhiyong

    2016-01-01

    Community-run, formal evaluations and manually annotated text corpora are critically important for advancing biomedical text-mining research. Recently in BioCreative V, a new challenge was organized for the tasks of disease named entity recognition (DNER) and chemical-induced disease (CID) relation extraction. Given the nature of both tasks, a test collection is required to contain both disease/chemical annotations and relation annotations in the same set of articles. Despite previous efforts...

  11. Traits related to species persistence and dispersal explain changes in plant communities subjected to habitat loss

    DEFF Research Database (Denmark)

    Marini, Lorenzo; Bruun, Hans Henrik; Heikkinen, Risto; Helm, Aveliina; Honnay, Olivier; Krauss, Jochen; Kühn, Ingolf; Lindborg, Regina; Pärtel, Meelis; Bommarco, Riccardo

    2012-01-01

    Aim Habitat fragmentation is a major driver of biodiversity loss but it is insufficiently known how much its effects vary among species with different life-history traits; especially in plant communities, the understanding of the role of traits related to species persistence and dispersal in...... regions distributed over four countries in Central and Northern Europe. Methods Our dataset was composed of primary data from studies on the distribution of plant communities in 300 grassland fragments in five regions. The regional datasets were consolidated by standardizing nomenclature and species life-history...... traits and by recalculating standardized landscape measures from the original geographical data. We assessed the responses of plant species richness to habitat area, connectivity, plant life-history traits and their interactions using linear mixed models. Results We found that the negative effect of...

  12. Ward identities and consistency relations for the large scale structure with multiple species

    International Nuclear Information System (INIS)

    We present fully nonlinear consistency relations for the squeezed bispectrum of Large Scale Structure. These relations hold when the matter component of the Universe is composed of one or more species, and generalize those obtained in [1,2] in the single species case. The multi-species relations apply to the standard dark matter + baryons scenario, as well as to the case in which some of the fields are auxiliary quantities describing a particular population, such as dark matter halos or a specific galaxy class. If a large scale velocity bias exists between the different populations new terms appear in the consistency relations with respect to the single species case. As an illustration, we discuss two physical cases in which such a velocity bias can exist: (1) a new long range scalar force in the dark matter sector (resulting in a violation of the equivalence principle in the dark matter-baryon system), and (2) the distribution of dark matter halos relative to that of the underlying dark matter field

  13. Differentiation of water-related traits in terrestrial and epiphytic Cymbidium species

    Directory of Open Access Journals (Sweden)

    Shi-Bao eZhang

    2015-04-01

    Full Text Available Epiphytes that grow in the canopies of tropical and subtropical forests experience different water regimes when compared with terrestrial plants. However, the differences in adaptive strategies between epiphytic and terrestrial plants with respect to plant water relations remain poorly understood. To understand how water-related traits contrast between epiphytic and terrestrial growth forms within the Cymbidium (Orchidaceae, we assessed leaf anatomy, hydraulics, and physiology of seven terrestrial and 13 epiphytic species using a common garden experiment. Compared with terrestrial species, epiphytic species had higher values for leaf mass per unit area (LMA, leaf thickness (LT, epidermal thickness, saturated water content (SWC and the time required to dry saturated leaves to 70% relative water content (T70. However, vein density (Dvein, stomatal density (SD, and photosynthetic capacity (Amax did not differ significantly between the two forms. T70 was positively correlated with LT, LMA, and SWC, and negatively correlated with stomatal index (SI. Amax showed positive correlations with SD and SI, but not with Dvein. Vein density was marginally correlated with SD, and significantly correlated with SI. Overall, epiphytic orchids exhibited substantial ecophysiological differentiations from terrestrial species, with the former type showing trait values indicative of greater drought tolerance and increased water storage capacity. The ability to retain water in the leaves plays a key role in maintaining a water balance in those epiphytes. Therefore, the process of transpiration depends less upon the current substrate water supply and enables epiphytic Cymbidium species to adapt more easily to canopy habitats.

  14. ESC resistance of commercial grade polycarbonates during exposure to butter and related chemicals

    DEFF Research Database (Denmark)

    Kjellander, Carina Koch; Nielsen, Tenna B; Ghanbari-Siahkali, Afshin;

    2008-01-01

    Three commercial grades of polycarbonates (Lexan (R) 144, Lexan (R) 104 and Makrolon Rx1805) were studied with respect to resistance to environmental stress cracking (ESC) when exposed to butter and related chemicals. The polycarbonates (PCs) were extensively characterised to determine whether...... differences in ESC resistance could be related to their structural or chemical properties. MALDI-TOF mass spectrometry revealed that Makrolon Rx:1805 contains a low molar mass material characterised as poly(propylene glycol)p, which was confirmed by ATR-FTIR and H-1 NMR. Some "non-absorbing" chemicals, such...

  15. Agrilus rubensteini, a new species from the Philippines related to the emerald ash borer, Agrilus planipennis Fairmaire (Coleoptera: Buprestidae)

    Science.gov (United States)

    A new species from the Philippines closely related to the emerald ash borer, Agrilus planipennis Fairmaire, 1888 (Coleoptera: Buprestidae) is described: Agrilus rubensteini Chamorro & Jendek, new species. This is the first species in the A. cyaneoniger species-group recorded for the Philippines. Agr...

  16. Effects of body size on sex-related migration vary between two closely related gull species with similar size dimorphism

    OpenAIRE

    Bosman, D.S.; Vercruijsse, H. J. P.; Stienen, E.W.M.; Vincx, M.; L. Neve; Lens, L.

    2012-01-01

    Studies of migration have revealed multiple trade-offs with other life-history traits that may underlie observed variation in migratory properties among ages and sexes. To assess whether, and to what extent, body size and/or sex-specific differences in competition for resources (e.g. breeding territories or winter food) may shape variation in migration distance and timing of arrival in ecologically and phylogenetically related species, we combined over 30 000 sightings of individually marked,...

  17. Smells like home: Chemically mediated co-habitation of two termite species in a single nest

    Czech Academy of Sciences Publication Activity Database

    Jirošová, Anna; Dolejšová, Klára; Kyjaková, Pavlína; Jančařík, Andrej; Majer, Pavel; Hanus, Robert

    Stockholm: International Society of Chemical Ecology, 2015. s. 389. [ISCE 2015. 29.06.2015-03.07.2015, Stockholm] R&D Projects: GA ČR GP13-25354P Institutional support: RVO:61388963 Keywords : termites * termite inquilines * Inquilinitermes inquilinus * Constrictotermes cavifrons * chemical communication * wax esters Subject RIV: CC - Organic Chemistry

  18. Changes in the chemical profile of cephalic salivary glands of Scaptotrigona postica (Hymenoptera, Meliponini) workers are phase related.

    Science.gov (United States)

    Poiani, Silvana B; Morgan, E David; Drijfhout, Falko P; da Cruz-Landim, Carminda

    2015-09-01

    Most advanced eusocial bees recruit their nest mates to food resources. Recent studies in Meliponini species have revealed that the cephalic salivary (labial) glands (CSGs) are responsible for the production of scent trail pheromones. Studies on CSGs have shown that changes occur in worker glandular cell morphology from emergence from brood combs until forager phase, which may be correlated to changes in the composition of the CSG secretion. However, the composition of the CSG secretion and the chemical changes that occur in it according to the worker's life phase or tasks performed are unknown for many species, including Scaptotrigona postica. In this study, the chemical profile of CSG secretion in S. postica workers was studied. Glands were taken from specimens that were newly emerged (NE), working in the brood comb area (CA) and foraging (FO), and were analyzed by gas chromatography-mass spectrometry. The results showed that the glandular secretion consists of oxygenated compounds of middle volatility (acids, alcohols, aldehydes, ketones, esters and ether), and their quantity varies among the different life phases, increasing as the individual moves from intra- to extra-colonial activities. The NE phase contained the smallest variety and quantity of compounds. Because of the variability of compounds, the CA workers were separated into three subgroups according to the chemical constitution of their secretion. Forager workers showed the largest quantity and variety of chemical compounds. The major compounds in forager gland secretion were 7-hexadecen-1-yl acetate and 5-tetradecen-1-yl acetate. Statistical analysis indicates that the chemical composition of glandular secretion is phase related. PMID:26333928

  19. Species interactions and chemical stress: combined effects of intraspecific and interspecific interactions and pyrene on Daphnia magna population dynamics.

    Science.gov (United States)

    Viaene, Karel P J; De Laender, Frederik; Rico, Andreu; Van den Brink, Paul J; Di Guardo, Antonio; Morselli, Melissa; Janssen, Colin R

    2015-08-01

    Species interactions are often suggested as an important factor when assessing the effects of chemicals on higher levels of biological organization. Nevertheless, the contribution of intraspecific and interspecific interactions to chemical effects on populations is often overlooked. In the present study, Daphnia magna populations were initiated with different levels of intraspecific competition, interspecific competition, and predation and exposed to pyrene pulses. Generalized linear models were used to test which of these factors significantly explained population size and structure at different time points. Pyrene had a negative effect on total population densities, with effects being more pronounced on smaller D. magna individuals. Among all species interactions tested, predation had the largest negative effect on population densities. Predation and high initial intraspecific competition were shown to interact antagonistically with pyrene exposure. This was attributed to differences in population structure before pyrene exposure and pyrene-induced reductions in predation pressure by Chaoborus sp. larvae. The present study provides empirical evidence that species interactions within and between populations can alter the response of aquatic populations to chemical exposure. Therefore, such interactions are important factors to be considered in ecological risk assessments. PMID:25772479

  20. QTL mapping of pomological traits in peach and related species breeding germplasm

    NARCIS (Netherlands)

    Fresnedo-Ramírez, J.; Bink, M.C.A.M.; Weg, van de W.E.; Famula, T.R.; Crisosto, C.H.; Frett, T.; Gasic, K.; Peace, C.P.; Gradziel, T.M.

    2015-01-01

    Peach is an economically important fruit tree crop that exhibits high phenotypic variability yet suffers from diversity-limited gene pool. Genetic introgression of novel alleles from related species is being pursued to expand genetic diversity. This process is, however, challenging and requires the

  1. Mitochondrial Genome Analysis of Wild Rice (Oryza minuta) and Its Comparison with Other Related Species

    Science.gov (United States)

    Asaf, Sajjad; Khan, Abdul Latif; Khan, Abdur Rahim; Waqas, Muhammad; Kang, Sang-Mo; Khan, Muhammad Aaqil; Shahzad, Raheem; Seo, Chang-Woo; Shin, Jae-Ho; Lee, In-Jung

    2016-01-01

    Oryza minuta (Poaceae family) is a tetraploid wild relative of cultivated rice with a BBCC genome. O. minuta has the potential to resist against various pathogenic diseases such as bacterial blight (BB), white backed planthopper (WBPH) and brown plant hopper (BPH). Here, we sequenced and annotated the complete mitochondrial genome of O. minuta. The mtDNA genome is 515,022 bp, containing 60 protein coding genes, 31 tRNA genes and two rRNA genes. The mitochondrial genome organization and the gene content at the nucleotide level are highly similar (89%) to that of O. rufipogon. Comparison with other related species revealed that most of the genes with known function are conserved among the Poaceae members. Similarly, O. minuta mt genome shared 24 protein-coding genes, 15 tRNA genes and 1 ribosomal RNA gene with other rice species (indica and japonica). The evolutionary relationship and phylogenetic analysis revealed that O. minuta is more closely related to O. rufipogon than to any other related species. Such studies are essential to understand the evolutionary divergence among species and analyze common gene pools to combat risks in the current scenario of a changing environment. PMID:27045847

  2. Differences in memory dynamics between two closely related parasitoid wasp species

    NARCIS (Netherlands)

    Bleeker, M.A.K.; Smid, H.M.; Steidle, J.L.M.; Kruidhof, H.M.; van Loon, J.J.A.; Vet, L.E.M.

    2006-01-01

    The two closely related parasitoids Cotesia glomerata and C. rubecula (Hymenoptera: Braconidae) coexist in The Netherlands where they occupy slightly different niches. When searching for their caterpillar hosts, they use host plant odours that are released upon feeding by the caterpillars. The speci

  3. Comparative study of closely related \\kur{Asteraceae} species with different invasive status

    OpenAIRE

    ŠAFARČÍKOVÁ, Simona

    2008-01-01

    Complex of 4 closely related Asteraceae species with different invasive status (native Bidens tripartita, casual aliens Cosmos bipinnatus, Coreopis tinctoria and invasive alien Bidens frondosa) was studied to clarify the invasive success of Bidens frondosa and to assess the invasive potential of both unsuccessful aliens. Among studied characteristics were included: reproductive traits (germination in different regimes, seed viability and seed production), growth characteristics (relative grow...

  4. Book of abstracts Chemical Engineering: IV All-Russian Conference on chemical engineering, All-Russian Youth Conference on chemical engineering, All-Russian school on chemical engineering for young scientists and specialists. Chemical engineering of nanomaterials. Energy- and resource-saving chemical-engineering processes and problems of their intensification. Processes and apparatuses of chemical engineering, chemical cybernetics. Ecological problems of chemical engineering and related fields

    International Nuclear Information System (INIS)

    In the given volume of abstracts of the IV All-Russian Conference on chemical engineering, All-Russian Youth Conference on chemical engineering, All-Russian school on chemical engineering for young scientists and specialists (Moscow, March 18-23, 2012) there are the abstracts of the reports concerning chemical engineering of nanomaterials, energy- and resource-saving chemical-engineering processes, processes and apparatuses of chemical engineering, chemical cybernetics, ecological problems of chemical engineering and related fields. The abstracts deal with state-of-the-art and future development of theoretical and experimental investigations as well as with experience in practical realization of development works in the field of chemical engineering and relative areas

  5. Synchrotron radiation study of the uranium chemical species electrodeposited for alpha spectrometry sources

    Energy Technology Data Exchange (ETDEWEB)

    Burciaga V, D. C.; Mendez, C. G.; Esparza P, H.; Fuentes C, L.; Fuentes M, L.; Montero C, M. E. [Centro de Investigacion en Materiales Avanzados, S. C., Miguel de Cervantes 120, Complejo Industrial Chihuahua, 31109 Chihuahua (Mexico); Beesley, A. M. [School of Chemical Engineering and Analytical Science, University of Manchester, Oxford Road, M13 9PL Manchester (United Kingdom); Crespo, M. T., E-mail: elena.montero@cimav.edu.m [Centro de Investigaciones Energeticas, Medioambientales y Tecnologicas, Laboratorio de Metrologia de Radiaciones Ionizantes, Avda. Complutense 22, 28040 Madrid (Spain)

    2011-02-15

    Alpha spectrometry (As) with semiconductor detectors has applications in nuclear decay data measurements, environmental, geological and nuclear wastes studies and other works requiring determination of actinide and other alpha emitter contents. In order to obtain accurate measurements by producing good resolution alpha spectra, As sources must be thin and uniform. As sources produced by electrodeposition consist of a radioactive deposit onto a metallic substrate (cathode of the electrolytic cell). Natural U sources prepared by the Hallstadius method have co-deposited Pt, originated from the dissolution of the anode during the electrodeposition. A recent work published else-where has reported a study on the morphology and spatial distribution of the U/Pt deposits with the related chemical speciation of U, using scanning electron microscopy with energy dispersive X-ray spectroscopy, X-ray photoelectron spectroscopy and X-ray absorption fine structure. The purpose of this work is to explain the structure of the Pt/U deposits. We have obtained new spectra of the U L III edge X-ray absorption fine structure by total electron yield at Stanford Synchrotron radiation light source, Bl 2-3. Grazing incidence X-ray diffraction (Gi-XRD) patterns were obtained at Stanford Synchrotron radiation light source, Bl 11-3. Gi-XRD patterns show a bimodal distribution of grain sizes of Pt, with dimensions {approx} 5 and 20 nm; schoepite diffraction signals suggest grain dimensions of {approx} 5 nm, i.e. with low crystallization. X-ray absorption fine structure spectra were fitted assuming two different structures: uranyl hydroxide and schoepite, and results were compared. U-U path shows low intensity that also may be a result of low crystallization. (Author)

  6. Novel Microsatellite Loci for Sebaea aurea (Gentianaceae and Cross-Amplification in Related Species

    Directory of Open Access Journals (Sweden)

    Jonathan Kissling

    2013-12-01

    Full Text Available Premise of the study: Microsatellite loci were developed in Sebaea aurea (Gentianaceae to investigate the functional role of diplostigmaty (i.e., the presence of additional stigmas along the style. Methods and Results: One hundred seventy-four and 180 microsatellite loci were isolated through 454 shotgun sequencing of genomic and microsatellite-enriched DNA libraries, respectively. Sixteen polymorphic microsatellite loci were characterized, and 12 of them were selected to genotype individuals from two populations. Microsatellite amplification was conducted in two multiplex groups, each containing six microsatellite loci. Cross-species amplification was tested in seven other species of Sebaea. The 12 novel microsatellite loci amplified only in the two most closely related species to S. aurea (i.e., S. ambigua and S. minutiflora and were also polymorphic in these two species. Conclusions: These results demonstrate the usefulness of this set of newly developed microsatellite loci to investigate the mating system and population genetic structure in S. aurea and related species.

  7. Relationships between Duck and Grassland Bird Relative Abundance and Species Richness in Southern Saskatchewan

    Directory of Open Access Journals (Sweden)

    Susan P. Skinner

    2008-06-01

    Full Text Available Digital map products that integrate long-term duck population and land-use data are currently being used to guide conservation program delivery on the Canadian Prairies. However, understanding the inter-relationships between ducks and other grassland bird species would greatly enhance program planning and delivery. We hypothesized that ducks, and Northern Pintail (Anas acuta in particular, may function as an umbrella guild for the overall breeding habitat quality for other grassland bird species. We compared grassland bird species richness and relative abundance among areas of low, moderate, and high predicted waterfowl breeding densities (i.e., duck density strata in the southern Missouri Coteau, Saskatchewan. We conducted roadside point counts and delineated habitats within a 400 m radius of each point. The duck high-density stratum supported greater avian species richness and abundance than did the duck low-density stratum. Overall, duck and other grassland bird species richness and abundance were moderately correlated, with all r between 0.37 and 0.69 (all P < 0.05. Although the habitat requirements of Northern Pintail may overlap with those of other grassland endemics, priority grassland bird species richness was only moderately correlated with total pintail abundance in both years, and the abundances of pintail and grassland songbirds listed by the Committee on the Status of Endangered Wildlife in Canada were not correlated. No differences in the mean number of priority grassland species were detected among the strata. Adequate critical habitat for several priority species may not be protected if conservation is focused only in areas of moderate to high wetland density because large tracts of contiguous, dry grassland habitat (e.g., pasture occur infrequently in high-quality duck habitat.

  8. Effects of polyhalogenated hydrocarbons and related contaminants on common tern reproduction: Integration of (bio)chemical and ecological responses

    Energy Technology Data Exchange (ETDEWEB)

    Murk, A.J. [Agricultural Univ., Wageningen (Netherlands); Boudewijn, T.J.; Dirksen, S. [Bureau Waardenburg, Culemborg (Netherlands); Bosveld, A.T.C. [Univ. of Utrecht (Netherlands); Rossaert, G.; Ysebaert, T.; Meire, P. [Inst. for Nature Management, Hasselt (Belgium); Meininger, P.L.

    1995-12-31

    An integrated ecotoxicological study was made to establish the possible effects of polyhalogenated hydrocarbons (PHAHs) on common tern (Stema hirundo) reproduction. In eight Dutch or Belgian colonies, breeding biology and food choice were determined. In all colonies 15 second eggs from three-egg clutches were collected for artificial incubation and (bio)chemical analysis. Results from these analyses were combined with biological data from the remaining eggs of the clutches. A relationship was found between yolksac mono-ortho PCB levels and main food species (fish or insects) of the adult terns before egg-laying. Colony average breeding data differed only slightly, and were difficult to relate to PHAH levels. When the colonies were grouped after yolksac PHAH-patterns and main food species, significant differences in average egg laying date, egg laying period, incubation period, egg volume and chick weight could be related to differences in yolksac PHAH and retinoid levels, and hepatic EROD activity. The data from all colonies also were used as one dataset and correlated with the (bio)chemical parameters. In summary there were significant correlations or clear trends between yolksac PHAHs or hepatic EROD-activity and prolonged egg laying and incubation period, and smaller eggs and chicks. Lower yolksac retinoid and plasma thyroid hormone levels, and a higher ratio of plasma retinol over yolksac retinoids correlated with longer egg laying and incubation periods, and smaller chicks and eggs (only with thyroid hormone).

  9. Stretching and breaking of chemical bonds, correlation of electrons, and radical properties of covalent species

    OpenAIRE

    Sheka, Elena

    2014-01-01

    Chemical bonds are considered in light of correlation of valence electrons that is strengthened when the bond is dissociated. In the framework of the unrestricted Hartree-Fock single-reference version of the configuration interaction theory, effectively unpaired electrons lay the foundation of the electron correlation measure in terms of total number of the electrons (molecular chemical susceptibility). graphs and their singularities with respect to the interatomic distance allow presenting a...

  10. Applications of LPG fiber optical sensors for relative humidity and chemical-warfare-agents monitoring

    Science.gov (United States)

    Luo, Shufang; Liu, Yongcheng; Sucheta, Artur; Evans, Mishell K.; Van Tassell, Roger

    2002-09-01

    A long-period grating (LPG) fiber optic sensor has been developed for monitoring the relative humidity levels and toxic chemicals, especially the chemical warfare agents. The principle of operation of this sensor is based on monitoring the refractive index changes exhibited by the reactive coating applied to the surface of the LPG region in response to analytes. Specific interaction of the analyte with the thin film polymer coating produces as the output a wavelength shift that can be correlated with the concentration of the analyte. Thin polymer coating for relative humidity sensor is made of carboxymethylcellulose (CMC) covalently bound to the surface of the fiber. Coating for chemical warfare agent detection employs metal nanoclusters imbedded in polyethylenimine (PEI) for specific reaction. The relative humidity level can be determined from 0% to 95% and the level of toxic chemicals can be determined is at least on the scale of 1 ppm. This small-size and low-cost LPG fiber optic sensor exhibited high sensitivity, rapid response, repeatability and durability. The goal of developing relative humidity sensor is to produce a fiber optic sensor-based health monitoring system for building, while the chemical sensor has found its application in point detection network for chemical warfare agent monitoring.

  11. A chemical probe technique for the determination of reactive halogen species in aqueous solution: Part 2 – chloride solutions and mixed bromide/chloride solutions

    Directory of Open Access Journals (Sweden)

    C. Anastasio

    2006-02-01

    Full Text Available Although reactive halogen species (X*=X●, ●X2−, X2 and HOX, where X=Br, Cl, or I are important environmental oxidants, relatively little is known about their kinetics in condensed phases such as seawater and sea-salt particles. Here we describe a new technique to determine reactive chlorine and bromine species in aqueous solutions by using allyl alcohol (CH2=CHCH2OH as a chemical probe. This probe is combined with competition kinetics in order to determine steady state concentrations of X*(aq. In some cases the technique also can be used to determine the rates of formation and lifetimes of X* in aqueous solution. In a companion paper we reported the results of our method development for aqueous solutions containing only bromide (Br−. In this paper, we discuss method development for solutions containing chloride (Cl− alone, and for solutions containing both bromide and chloride.

  12. Catheter-related bacteraemia and infective endocarditis caused by Kocuria species.

    Science.gov (United States)

    Lai, C C; Wang, J Y; Lin, S H; Tan, C K; Wang, C Y; Liao, C H; Chou, C H; Huang, Y T; Lin, H I; Hsueh, P R

    2011-02-01

    We describe five patients with positive blood culture for Kocuria species. Three patients had catheter-related bacteraemia and one had infective endocarditis caused by Kocuria kristinae, and one had a K. marina isolate, which was considered to be a contaminant. Identification of the isolates was further confirmed by 16S rRNA gene sequence analysis. In conclusion, Kocuria species are an unusual cause of infection in immunocompromised patients. Accurate identification with molecular methods is imperative for the diagnosis of these unusual pathogens. PMID:20218989

  13. Growth response and ionic relation in two brassica species under water stress conditions

    International Nuclear Information System (INIS)

    A glasshouse study of Brassica campestris and Brassica juncea showed that the growth and the ionic parameters of both the species were significantly (p < 0.0 I) affected due to water stress. Shoot length of both the species decreased consistently with decrease in solute potential (PSI) in the root medium. Relative growth rate and dry mass was higher in B. juncea than B. campestris but leaf area was less. Concentrations of K Ca/sup 2/ P and S generally decreased with gradual increase in water stress B. campestris was more susceptible to water stress than B juncea. (author)

  14. Are cactus growth forms related to germination responses to light? A test using Echinopsis species

    Science.gov (United States)

    Ortega-Baes, Pablo; Aparicio-González, Mónica; Galíndez, Guadalupe; del Fueyo, Patricia; Sühring, Silvia; Rojas-Aréchiga, Mariana

    2010-05-01

    In this study, we investigated the effect of light regimen (white light vs. darkness) on the germination of 12 species of the Echinopsis genus (tribe Trichocereeae, Cactaceae). This genus presents a variety of growth forms and relatively small and uniform seed size. These traits allowed us to test, within the same linage and removing seed mass effect, the hypothesis that the germination response to light (indifferent to light or positive photoblastic) is related to growth form. Our results reject this hypothesis since no seeds germinated in darkness, so all of the species can be classified as being positively photoblastic. The proportion of seed germination with white light was significantly different among cactus growth forms. Columnar cacti (arborescent, creeping and short) showed a greater proportion of seed germination than barrel and globose cacti. The germination rate differed among growth forms and species. At constant temperatures, creeping columnar cacti presented a significantly higher germination rate than the other growth forms. With alternating temperatures, columnar cacti showed higher germination rates than the other growth forms. The low proportion of seeds that germinated for some species indicates that they show seed dormancy. Our results suggest that germination responses to light in the cactus family could be related to seed mass and phylogenetic constraints.

  15. Habitat filtering and niche differentiation jointly explain species relative abundance within grassland communities along fertility and disturbance gradients.

    OpenAIRE

    Maire, Vincent; Gross, Nicolas; BORGER, Luca; Proulx, Raphaël; Wirth, Christian; Da Silveira Pontes, Laise; Soussana, Jean-François; Louault, Frédérique

    2012-01-01

    Deterministic niche-based processes have been proposed to explain species relative abundance within communities but lead to different predictions: habitat filtering (HF) predicts dominant species to exhibit similar traits while niche differentiation (ND) requires that species have dissimilar traits to coexist. Using a multiple trait-based approach, we evaluated the relative roles of HF and ND in determining species abundances in productive grasslands. Four dimensions of the functional niche o...

  16. Soil chemical properties related to acidity under successive pig slurry application

    OpenAIRE

    Cledimar Rogério Lourenzi; Carlos Alberto Ceretta; Leandro Souza da Silva; Gustavo Trentin; Eduardo Girotto; Felipe Lorensini; Tadeu Luis Tiecher; Gustavo Brunetto

    2011-01-01

    Pig slurry application as soil manure can alter the chemical properties of the soil and affect its acidity, modifying the environment for crop growth and development. The objective of this study was to evaluate the chemical properties related to soil acidity subjected to successive applications of pig slurry. The experiment was conducted in May 2000, in an experimental area of the Federal University of Santa Maria (UFSM) under no-tillage and lasted until January 2008. Nineteen surface applica...

  17. Chemical and biological work-related risks across occupations in Europe: a review

    OpenAIRE

    Montano, Diego

    2014-01-01

    Background Work-related health inequalities are determined to some extent by an unequal exposure to chemical and biological risk factors of disease. Although their potential economic burden in the European Union (EU-25) might be substantial, comprehensive reviews focusing on the distribution of these risks across occupational groups are limited. Thus, the main objective of this review is to provide a synopsis of the exposure to chemical and biological hazards across occupational groups. In ad...

  18. Chemical composition of hydroethanolic extracts from five species of the Passiflora genus

    Directory of Open Access Journals (Sweden)

    Marna E Sakalem

    2012-12-01

    Full Text Available The diversified genus Passiflora is well distributed all over Brazil, and many species have been long used as medicinal plants, mainly against anxiety disturbances. This effect has been attributed to its rich flavonoid composition. Flavonoids’ main class, flavonoid glycosides, has presented central action, particularly as sedative-hypnotic, anxiolytic and analgesic. The objective of the present study was to make a phytochemical screening of five little studied Passiflora species, in order to evaluate their phenolic composition. For this aim, HPLC-DAD-ESI-MS/MS was used. After the preparation of the hydroalcoholic extracts, each species was evaluated by direct injection electrospray ionization (ESI and tandem mass spectrometry. Although belonging to the same genus, the composition of each species presented particularities; this justifies the importance of studies aiming for the phenolic composition of different Passiflora species. Flavones C-glycosides were detected in all extracts, and are found as the main constituents in P. vitifolia, P. coccinea, P. bahiensis and P. sidifolia. In this last one, flavone-6,8-di-C-glycoside, apigenin-6-C-rhamnosyl-8-C-arabinoside are present in high content. Cyclopassiflosides were found in high content together with cyanogenic glycosides in P. quadrangularis, while in P. coccinea, besides flavones-C-glycosides were also found procyanidins.

  19. A crowdsourcing workflow for extracting chemical-induced disease relations from free text.

    Science.gov (United States)

    Li, Tong Shu; Bravo, Àlex; Furlong, Laura I; Good, Benjamin M; Su, Andrew I

    2016-01-01

    Relations between chemicals and diseases are one of the most queried biomedical interactions. Although expert manual curation is the standard method for extracting these relations from the literature, it is expensive and impractical to apply to large numbers of documents, and therefore alternative methods are required. We describe here a crowdsourcing workflow for extracting chemical-induced disease relations from free text as part of the BioCreative V Chemical Disease Relation challenge. Five non-expert workers on the CrowdFlower platform were shown each potential chemical-induced disease relation highlighted in the original source text and asked to make binary judgments about whether the text supported the relation. Worker responses were aggregated through voting, and relations receiving four or more votes were predicted as true. On the official evaluation dataset of 500 PubMed abstracts, the crowd attained a 0.505F-score (0.475 precision, 0.540 recall), with a maximum theoretical recall of 0.751 due to errors with named entity recognition. The total crowdsourcing cost was $1290.67 ($2.58 per abstract) and took a total of 7 h. A qualitative error analysis revealed that 46.66% of sampled errors were due to task limitations and gold standard errors, indicating that performance can still be improved. All code and results are publicly available athttps://github.com/SuLab/crowd_cid_relexDatabase URL:https://github.com/SuLab/crowd_cid_relex. PMID:27087308

  20. Species distribution in human immunodeficiency virus-related mycobacterial infections: implications for selection of initial treatment.

    Science.gov (United States)

    Montessori, V; Phillips, P; Montaner, J; Haley, L; Craib, K; Bessuille, E; Black, W

    1996-06-01

    Management of mycobacterial infection is species specific; however, treatment is prompted by positive smears or cultures, often several weeks before species identification. The objective of this study was to determine the species distribution of mycobacterial isolates from various body sites in patients infected with human immunodeficiency virus (HIV). All mycobacterial isolates recovered at St. Paul's Hospital (Vancouver, British Columbia, Canada) from April 1989 to March 1993 were reviewed. Among 357 HIV-positive patients with mycobacterial infections, 64% (96) of the sputum isolates were Mycobacterium avium complex (MAC), 18% were Mycobacterium tuberculosis, and 17% were Mycobacterium kansasii. Lymph node involvement (25 patients) was due to either MAC (72%) or M. tuberculosis (24%). Two hundred ninety-eight episodes of mycobacteremia were due to MAC (98%), M. tuberculosis (1%), and M. kansasii (1%). Similarly, cultures of 84 bone marrow biopsy specimens (99%), 19 intestinal biopsy specimens (100%), and 30 stool specimens (97%) yielded predominantly MAC. These results have implications for initial therapy, particularly in areas where rapid methods for species identification are not readily available. Because of considerable geographic variation, development of guidelines for selection of initial therapy depends on regional determination of species distribution in HIV-related mycobacterial infections. PMID:8783698

  1. Archaeorhizomyces borealis sp. nov. and a sequence-based classification of related soil fungal species.

    Science.gov (United States)

    Menkis, Audrius; Urbina, Hector; James, Timothy Y; Rosling, Anna

    2014-12-01

    The class Archaeorhizomycetes (Taphrinomycotina, Ascomycota) was introduced to accommodate an ancient lineage of soil-inhabiting fungi found in association with plant roots. Based on environmental sequencing data Archaeorhizomycetes may comprise a significant proportion of the total fungal community in soils. Yet the only species described and cultivated in this class is Archaeorhizomyces finlayi. In this paper, we describe a second species from a pure culture, Archaeorhizomyces borealis NS99-600(T) (=CBS138755(ExT)) based on morphological, physiological, and multi-locus molecular characterization. Archaeorhizomyces borealis was isolated from a root tip of a Pinus sylvestris seedling grown in a forest nursery in Lithuania. Analysis of Archaeorhizomycete species from environmental samples shows that it has a Eurasian distribution and is the most commonly observed species. Archaeorhizomyces borealis shows slow growth in culture and forms yellowish creamy colonies, characteristics that distinguish A. borealis from its closest relative A. finlayi. Here we also propose a sequence-based taxonomic classification of Archaeorhizomycetes and predict that approximately 500 species in this class remain to be isolated and described. PMID:25457942

  2. Changes in the Relative Abundance of Two Saccharomyces Species from Oak Forests to Wine Fermentations

    Science.gov (United States)

    Dashko, Sofia; Liu, Ping; Volk, Helena; Butinar, Lorena; Piškur, Jure; Fay, Justin C.

    2016-01-01

    Saccharomyces cerevisiae and its sibling species Saccharomyces paradoxus are known to inhabit temperate arboreal habitats across the globe. Despite their sympatric distribution in the wild, S. cerevisiae is predominantly associated with human fermentations. The apparent ecological differentiation of these species is particularly striking in Europe where S. paradoxus is abundant in forests and S. cerevisiae is abundant in vineyards. However, ecological differences may be confounded with geographic differences in species abundance. To compare the distribution and abundance of these two species we isolated Saccharomyces strains from over 1200 samples taken from vineyard and forest habitats in Slovenia. We isolated numerous strains of S. cerevisiae and S. paradoxus, as well as a small number of Saccharomyces kudriavzevii strains, from both vineyard and forest environments. We find S. cerevisiae less abundant than S. paradoxus on oak trees both within and outside the vineyard, but more abundant on grapevines and associated substrates. Analysis of the uncultured microbiome shows, that both S. cerevisiae and S. paradoxus are rare species in soil and bark samples, but can be much more common in grape must. In contrast to S. paradoxus, European strains of S. cerevisiae have acquired multiple traits thought to be important for life in the vineyard and dominance of wine fermentations. We conclude, that S. cerevisiae and S. paradoxus currently share both vineyard and non-vineyard habitats in Slovenia and we discuss factors relevant to their global distribution and relative abundance. PMID:26941733

  3. Aspergillus oerlinghausenensis, a new mould species closely related to A. fumigatus.

    Science.gov (United States)

    Houbraken, Jos; Weig, Michael; Groß, Uwe; Meijer, Martin; Bader, Oliver

    2016-02-01

    Two isolates belonging to Aspergillus section Fumigati were recovered from German soil on itraconazole containing agar media. Phylogenetic analysis and phenotypic characterization of both isolates show that they represent a novel species named Aspergillus oerlinghausenensis (holotype CBS H-22119(HT), ex-type CBS 139183(T) = IBT 33878 = DTO 316-A3). The species is phylogenetically related to A. fischeri and A. fumigatus. Aspergillus oerlinghausenensis can be differentiated from A. fischeri by its higher growth rate at 50°C. Furthermore, A. oerlinghausenensis is protoheterothallic as only the MAT1-1 idiomorph was detected, while A. fischeri is homothallic. The species differs from A. fumigatus by a weak sporulation on malt extract agar at 25°C, a floccose colony texture on Czapek yeast extract agar and malt extract agar and subglobose instead of subclavate vesicles. The cyp51A promoter region of A. oerlinghausenensis deviates from the previously reported cyp51A promoter regions in A. fumigatus and potentially presents a novel azole resistance conferring modification. Due to the close relationship of A. oerlinghausenensis with A. fischeri and A. fumigatus, this species is placed in a good position for comparative studies involving these species. PMID:26667219

  4. Changes in the Relative Abundance of Two Saccharomyces Species from Oak Forests to Wine Fermentations.

    Science.gov (United States)

    Dashko, Sofia; Liu, Ping; Volk, Helena; Butinar, Lorena; Piškur, Jure; Fay, Justin C

    2016-01-01

    Saccharomyces cerevisiae and its sibling species Saccharomyces paradoxus are known to inhabit temperate arboreal habitats across the globe. Despite their sympatric distribution in the wild, S. cerevisiae is predominantly associated with human fermentations. The apparent ecological differentiation of these species is particularly striking in Europe where S. paradoxus is abundant in forests and S. cerevisiae is abundant in vineyards. However, ecological differences may be confounded with geographic differences in species abundance. To compare the distribution and abundance of these two species we isolated Saccharomyces strains from over 1200 samples taken from vineyard and forest habitats in Slovenia. We isolated numerous strains of S. cerevisiae and S. paradoxus, as well as a small number of Saccharomyces kudriavzevii strains, from both vineyard and forest environments. We find S. cerevisiae less abundant than S. paradoxus on oak trees both within and outside the vineyard, but more abundant on grapevines and associated substrates. Analysis of the uncultured microbiome shows, that both S. cerevisiae and S. paradoxus are rare species in soil and bark samples, but can be much more common in grape must. In contrast to S. paradoxus, European strains of S. cerevisiae have acquired multiple traits thought to be important for life in the vineyard and dominance of wine fermentations. We conclude, that S. cerevisiae and S. paradoxus currently share both vineyard and non-vineyard habitats in Slovenia and we discuss factors relevant to their global distribution and relative abundance. PMID:26941733

  5. Changes in the relative abundance of two Saccharomyces species from oak forests to wine fermentations

    Directory of Open Access Journals (Sweden)

    Sofia eDashko

    2016-02-01

    Full Text Available Saccharomyces cerevisiae and its sibling species S. paradoxus are known to inhabit temperate arboreal habitats across the globe. Despite their sympatric distribution in the wild, S. cerevisiae is predominantly associated with human fermentations. The apparent ecological differentiation of these species is particularly striking in Europe where S. paradoxus is abundant in forests and S. cerevisiae is abundant in vineyards. However, ecological differences may be confounded with geographic differences in species abundance. To compare the distribution and abundance of these two species we isolated Saccharomyces strains from over 1,200 samples taken from vineyard and forest habitats in Slovenia. We isolated numerous strains of S. cerevisiae and S. paradoxus as well as small number of S. kudriavzevii strains from both vineyard and forest environments. We find S. cerevisiae less abundant than S. paradoxus on oak trees both within and outside the vineyard, but more abundant on grapevines and associated substrates. Analysis of the uncultured microbiome shows that both S. cerevisiae and S. paradoxus are rare species in soil and bark samples, but can be much more common in grape must. In contrast to S. paradoxus, European strains of S. cerevisiae have acquired multiple traits thought to be important for life in the vineyard and dominance of wine fermentations. We conclude that S. cerevisiae and S. paradoxus currently share both vineyard and non-vineyard habitats in Slovenia and we discuss factors relevant to their global distribution and relative abundance.

  6. Comparison of rumen microbial inhibition resulting from various essential oils isolated from relatively unpalatable plant species.

    Science.gov (United States)

    Oh, H K; Jones, M B; Longhurst, W M

    1968-01-01

    Essential oils were isolated from eight plant species which were relatively unpalatable to sheep and deer. The inhibitory potency of these essential oils upon sheep and deer rumen microorganisms was compared, in terms of total gas and volatile fatty acid (VFA) production, by use of an anaerobic manometric technique. Inhibitory effects of oils from the eight plant species may be placed in four groups: (i) essential oils from vinegar weed (Trichostema lanceoletum) and California bay (Umbellularia californica) inhibited rumen microbial activity most; (ii) lesser inhibition was exhibited by rosemary (Rosmarinus officinalis) and California mugwort (Artemisia douglasiana) oils, followed by (iii) blue-gum eucalyptus (Eucalyptus globulus) and sagebrush (Artemisia tridentata) oils; and (iv) oils from Douglas fir (Psuedotsuga menziesii) and Jerusalem oak (chenopodium botrys) resulted in the least inhibition, when 0.3 ml of each oil was used. A highly significant correlation coefficient (r = 0.98(**)) between total gas and VFA production indicated the validity of either method to measure the activity of rumen microorganisms. Our results are discussed in relation to the hypothesis that the selectivity and voluntary consumption of ruminants are related to the characteristic odor and antibacterial action of essential oils isolated from relatively unpalatable plant species. PMID:5636470

  7. Evaluation of the chemical reactions from two electrogenerated species in picoliter volumes by scanning electrochemical microscopy.

    Science.gov (United States)

    Wang, Qian; Rodríguez-López, Joaquín; Bard, Allen J

    2010-09-10

    The volume created by the positioning of two scanning electrochemical microscope (SECM) probes (tip and substrate) at a micrometric distance defines a "picoliter beaker" where homogeneous electron-transfer reactions are studied. The SECM is used to concurrently electrogenerate in situ two reactive species and to evaluate the possibility of detecting their reactivity. Two reaction cases are studied: the first, called the "reversible case", occurs when the electrochemically generated species at the substrate electrode can also react at the tip to yield the same product as the reaction in the gap. The second case, named the "irreversible case", occurs when the electrochemically generated species at the substrate are not able to react at the tip. Digital simulations are performed and compared to experimental studies. These show that an unusual compensation between collection and feedback effects render the analysis inapplicable in the "reversible case". The "irreversible case" is shown experimentally. PMID:20687152

  8. Effects of Pig Slurry Application and Crops on Phosphorus Content in Soil and the Chemical Species in Solution

    Directory of Open Access Journals (Sweden)

    Lessandro De Conti

    2015-06-01

    Full Text Available The application of pig slurry rates and plant cultivation can modify the soil phosphorus (P content and distribution of chemical species in solution. The purpose of this study was to evaluate the total P, available P and P in solution, and the distribution of chemical P species in solution, in a soil under longstanding pig slurry applications and crop cultivation. The study was carried out in soil columns with undisturbed structure, collected in an experiment conducted for eight years in the experimental unit of the Universidade Federal de Santa Maria (UFSM, Santa Maria (RS. The soil was an Argissolo Vermelho distrófico arênico (Typic Hapludalf, subjected to applications of 0, 20, 40, and 80 m3 ha-1 pig slurry. Soil samples were collected from the layers 0-5, 5-10, 10-20, 20-30, 30-40, and 40-60 cm, before and after black oat and maize grown in a greenhouse, for the determination of available P, total P and P in the soil solution. In the solution, the concentration of the major cations, anions, dissolved organic carbon (DOC, and pH were determined. The distribution of chemical P species was determined by software Visual Minteq. The 21 pig slurry applications increased the total P content in the soil to a depth of 40 cm, and the P extracted by Mehlich-1 and from the solution to a depth of 30 cm. Successive applications of pig slurry changed the balance between the solid and liquid phases in the surface soil layers, increasing the proportion of the total amount of P present in the soil solution, aside from changing the chemical species in the solution, reducing the percentage complexed with Al and increasing the one complexed with Ca and Mg in the layers 0-5 and 5-10 cm. Black oat and maize cultivation increased pH in the solution, thereby increasing the proportion of HPO42- and reducing H2PO4- species.

  9. ANALYSIS OF CHEMICAL COMPOUNDS OF AGARWOOD OIL FROM DIFFERENT SPECIES BY GAS CHROMATOGRAPHY MASS SPECTROMETRY (GCMS)

    OpenAIRE

    Yumi Zuhanis Has-Yun Hashim; Nur Izzah Ismail; Phirdaous Abbas

    2014-01-01

    ABSTRACT: Agarwood oil is a highly prized type of oil due to its unique aroma. The oil is extracted from the fragrant resin found in the agarwood tree (trunk).  The unique aroma and quality of agarwood resin and oil are contributed by the presence of certain chemical compounds. In this work, analysis and comparison of the chemical compounds of agarwood oil from A. malaccensis, A. sub-integra and a mixture of both were conducted.  The essential oils were diluted in hexane (5%) prior to gas chr...

  10. Chemical composition of fog water in Nanjing area of China and its related fog microphysics

    Science.gov (United States)

    Lu, Chunsong; Niu, Shengjie; Tang, Lili; Lv, Jingjing; Zhao, Lijuan; Zhu, Bin

    2010-07-01

    Fog samples were collected at Pancheng in the Nanjing area of China during December 2006 and December 2007. Fog droplet spectra, surface meteorological elements and visibility were also measured during the same period. The data from PM 10, SO 2 and NO 2 measurements were obtained from the air quality monitoring networks of Nanjing. The total ionic concentration (TIC) and electrical conductivity (EC) in fog samples, and the local pollutant emissions were one or two orders of magnitude higher than those found in Europe or South America for instance. Pollutants were expected to be mainly from local sources, including factories, plants, freeways, soil sources, house construction, and biomass burning. Advection also contributed to pollution levels in radiation-advection fogs. The scavenging of NH 3 and coarse particles by fog droplets was the main cause for the high mean pH value of 5.9. In-phase temporal evolution of TIC, [SO 42-], [NO 3-], SO 2, NO 2, PM 10 and S/LWC (S: the surface area of fog droplets per unit volume of air; LWC: liquid water content) was found to be due to the interaction of air pollutants and fog droplets, change of air mass due to advection, and so on. S/LWC seemed to be a better indicator for describing the relationship between TIC and microphysics with respect to LWC. A formula between TIC and S/LWC was derived and the related parameters were discussed. Depositions of chemical species in fog cases were estimated and the result showed that deposition was efficient.

  11. Development and characterization of simple sequence repeats for Bipolaris sorokiniana and cross transferability to related species.

    Science.gov (United States)

    Fajolu, Oluseyi L; Wadl, Phillip A; Vu, Andrea L; Gwinn, Kimberly D; Scheffler, Brian E; Trigiano, Robert N; Ownley, Bonnie H

    2013-01-01

    Simple sequence repeats (SSR) markers were developed from a small insert genomic library for Bipolaris sorokiniana, a mitosporic fungal pathogen that causes spot blotch and root rot in switchgrass. About 59% of sequenced clones (n = 384) harbored SSR motifs. After eliminating redundant sequences, 196 SSR loci were identified, of which 84.7% were dinucleotide repeats and 9.7% and 5.6% were tri- and tetra-nucleotide repeats, respectively. Primer pairs were designed for 105 loci and 85 successfully amplified loci. Sixteen polymorphic loci were characterized with 15 B. sorokiniana isolates obtained from infected switchgrass plant materials collected from five states in USA. These loci successfully cross-amplified isolates from at least one related species, including Bipolaris oryzae, Bipolaris spicifera and Bipolaris victoriae, that causes leaf spot on switchgrass. Haploid gene diversity per locus across all isolates studied varied 0.633-0.861. Principal component analysis of SSR data clustered isolates according to their respective species. These SSR markers will be a valuable tool for genetic variability and population studies of B. sorokiniana and related species that are pathogenic on switchgrass and other host plants. In addition, these markers are potential diagnostic tools for species in the genus Bipolaris. PMID:23709521

  12. Effects of Dispersal-Related Factors on Species Distribution Model Accuracy for Boreal Lake Ecosystems

    Directory of Open Access Journals (Sweden)

    Simon Hallstan

    2013-05-01

    Full Text Available Species distribution modeling is used in applied ecology; for example in predicting the consequences of global change. However, questions still remain about the robustness of model predictions. Here we estimate effects of landscape spatial configuration and organism flight ability—factors related to dispersal—on the accuracy of species distribution models. Distribution models were developed for 129 phytoplankton taxa, 164 littoral invertebrate taxa and 44 profundal invertebrate taxa sampled in 105 Swedish lakes, using six different modeling techniques (generalized linear models (GLM, multivariate adaptive regression splines (MARS, classification tree analysis (CTA, mixture discriminant analysis (MDA, generalized boosting models (GBM and random forests (RF. Model accuracy was not affected by dispersal ability (i.e., invertebrate flight ability, but the accuracy of phytoplankton assemblage predictions and, to a lesser extent, littoral invertebrate assemblages were related to ecosystem size and connectivity. Although no general pattern across species or spatial configuration was evident from our study, we recommend that dispersal and spatial configuration of ecosystems should be considered when developing species distribution models.

  13. Differences between Lipids Extracted from Five Species Are Not Sufficient To Explain Biomagnification of Nonpolar Organic Chemicals

    DEFF Research Database (Denmark)

    Jahnke, Annika; Holmbäck, Jan; Andersson, Rina Argelia;

    2015-01-01

    Lipids are the major sorptive phase for many organic chemicals that bioaccumulate in foodwebs. However, “lipids” are usually operationally defined by the extraction protocol. Large differences in sorptive capacities between species would violate assumptions implicit in widely used lipid-normaliza......Lipids are the major sorptive phase for many organic chemicals that bioaccumulate in foodwebs. However, “lipids” are usually operationally defined by the extraction protocol. Large differences in sorptive capacities between species would violate assumptions implicit in widely used lipid......-normalization procedures and invalidate generic bioaccumulation factors. We extracted lipids from five species from different trophic levels and domains and determined fractions of triglycerides, phospholipids, and cholesterol. We passively dosed the lipids with cyclic volatile methylsiloxanes and chlorobenzenes via...... headspace from spiked olive oil to determine their sorptive capacities. Lipids from seal blubber and pork bacon solely composed of triglycerides had capacities similar to that of olive oil; lipids from mussels, herring, and guillemot egg had quantifiable fractions of phospholipids and cholesterol and showed...

  14. Chiral dynamics and operator relations at non-zero chemical potential

    International Nuclear Information System (INIS)

    We discuss Taylor expansions of operator expectation values in QCD with respect to chemical potentials of quarks. Maxwell's relations between coefficients and Ward identities between series are used to relate the operators which give the Taylor coefficients of the series for the chiral condensate, the pseudoscalar susceptibility and the mass dependence of quark number susceptibilities. Through such relations the physics of chiral dynamics are explored. The renormalized expectation values of the chiral condensate and its Taylor coefficients are extracted from simulation

  15. Genetic divergence within the Drosophila mayaguana subcluster, a closely related triad of Caribbean species in the repleta species group.

    Science.gov (United States)

    O'Grady, P M; Durando, C M; Heed, W B; Wasserman, M; Etges, W; Desalle, R

    2002-01-01

    The mayaguana triad of the Drosophila repleta species group includes D. mayaguana, D. straubae, and D. parisiena, the latter two of which are very similar when examined morphologically. Many morphological characters used to define these taxa are quantitative and overlap substantially among some forms--it is only through suites of such characters that species can be identified. We apply Population Aggregation Analysis and tree building methods to five rapidly evolving gene regions--the mitochondrial AT rich region and the nuclear acetylcholinesterase, hunchback, mastermind, and vestigial loci to test the morphological species delineations within the morphocryptic mayaguana triad. We find that D. mayaguana is diagnosable using DNA sequences, but the other two species form a non-diagnosable paraphyletic assemblage. A single ecological factor, oviposition substrate, is an important diagnostic character distinguishing D. straubae from D. parisiena, highlighting the importance of examining a diverse array of data (morphological, molecular, ecological, and behavioral) when defining species limits. PMID:12471672

  16. Assessing the impact of non-native freshwater fishes on native species using relative weight

    Directory of Open Access Journals (Sweden)

    Giannetto D.

    2012-01-01

    Full Text Available The aim of the research was to test relative weight (Wr, a condition index which allows evaluation of fish well-being, as a tool to investigate the impact of the presence of non native species (NNS on the condition of the key native species (NS of the Tiber River basin (Italy: Barbustyberinus Bonaparte, Leuciscus cephalus (Linnaeus, Leuciscus lucumonis Bianco, Rutilus rubilio (Bonaparte and Telestes muticellus (Bonaparte. By means of Canonical Correlation Analysis, data from 130 sampling sites, distributed throughout Tiber River basin, were examined. Wr of NS was related to densities of NNS and to environmental variables. Moreover, the correlation between Wr of NS and density of NNS was investigated through linear regression analysis and covariance analysis. Preliminary results encourage the use of Wr as a tool to assess the relationship between NS and ecological factors (such as the presence of NNS and to explain the changes that occur along the longitudinal gradient of a river.

  17. Evaluating chemical exposure and effect models for aquatic species with a focus on crude oil constituents

    NARCIS (Netherlands)

    Hoop, L. de

    2016-01-01

    The aim of this PhD thesis is to evaluate a suite of exposure and effect models on their applicability in ecological risk assessment for aquatic species and ecosystems. The focus is on oil constituents, as it is largely unknown whether current ecological models are applicable to crude oil and its co

  18. The study and applications of photochemical-dynamical gravity wave model Ⅱ-- The effects of stable gravity wave on chemical species distribution in mesosphere

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    A nonlinear, compressible, non-isothermal gravity wave model that involves photochemistry is used to study the effects of gravity wave on atmospheric chemical species distributions in this paper. The changes in the distributions of oxygen compound and hydrogen compound density induced by gravity wave propagation are simulated. The results indicate that when a gravity wave propagates through a mesopause region, even if it does not break, it can influence the background distributions of chemical species. The effect of gravity wave on chemical species at night is larger than in daytime.

  19. Redescription of Neocamallanus singhi (Nematoda: Camallanidae) with a note on related species.

    Science.gov (United States)

    De, N C; Majumdar, G

    1984-01-01

    The present paper deals with the redescription of the nematode Neocamallanus singhi Ali, 1957 based on specimens collected from the fish, Channa striata from Burdwan, West Bengal, India. Comparative study of this species with other related forms described from freshwater fishes of India and Pakistan indicates that Neocamallanus bengalensis Soota et Chaturvedi, 1971 and N. ophicephali Rehana et Bilquees, 1972 are synonyms of N. singhi. PMID:6745795

  20. Microbial Environment Affects Innate Immunity in Two Closely Related Earthworm Species Eisenia andrei and Eisenia fetida

    OpenAIRE

    Jiří Dvořák; Veronika Mančíková; Václav Pižl; Dana Elhottová; Marcela Silerová; Radka Roubalová; František Skanta; Petra Procházková; Martin Bilej

    2013-01-01

    Survival of earthworms in the environment depends on their ability to recognize and eliminate potential pathogens. This work is aimed to compare the innate defense mechanisms of two closely related earthworm species, Eisenia andrei and Eisenia fetida, that inhabit substantially different ecological niches. While E. andrei lives in a compost and manure, E. fetida can be found in the litter layer in forests. Therefore, the influence of environment-specific microbiota on the immune response of b...

  1. Anatomy of Subterranean Organs of Medicinally Used Cardueae and Related Species and its Value for Discrimination

    OpenAIRE

    Fritz, Elisabeth; Saukel, Johannes

    2010-01-01

    Numerous species of the Asteraceae, the composites, are famous for their use in both traditional and conventional medicine. Reliable anatomical descriptions of these plants and of possible adulterations provide a basis for fast identification and cheap purity controls of respective medicinal drugs by means of light microscopy. Nevertheless, detailed comparative studies on root and rhizome anatomy of valuable as well as related inconsiderable composite plants are largely missing yet. The prese...

  2. Genetic diversity among Salvia miltiorrhiza Bunge and related species inferred from nrDNA ITS sequences

    OpenAIRE

    ZHANG Li; Zhao, Hong-Xia; Fan, Xing; WANG, Meng; Ding, Chun-Bang; Yang, Rui-Wu

    2012-01-01

    To investigate the genetic diversity and phylogenetic relationships of Salvia miltiorrhiza and related species, we analyzed the nuclear ribosomal DNA internal transcribed spacer (ITS) region for 7 accessions of Salvia miltiorrhiza and another 23 samples from other taxa within the genus Salvia by maximum parsimony and Bayesian inference analyses. There were 257 variation sites amounting to 40.8% of the total base pairs. All of the data revealed abundant genetic diversity in the genus Salvia. T...

  3. TOXICITY AND METABOLISM STUDIES WITH EPA (ENVIRONMENTAL PROTECTION AGENCY) PRIORITY POLLUTANTS AND RELATED CHEMICALS IN FRESHWATER ORGANISMS

    Science.gov (United States)

    Twenty-two chemicals from the EPA priority pollutant list were studied for their acute and/or chronic toxicity to selected freshwater organisms. Freshwater species tested included the fathead minnow (Pimephales promelas), rainbow trout (Salmo gairdneri), bluegill sunfish (Lepomis...

  4. Influence of the mineralogical composition of cement in the diffusion of chemical species

    International Nuclear Information System (INIS)

    The disposal is the final stage of radioactive waste management. This is essentially placing them in a facility with a reasonable assurance of safety. In this last stage, the ultimate goal is the confinement and isolation of radioactive waste from the human environment for a time period and under conditions such that the release of radionuclides not put in radiation risk to people and the environment. In relation to the storage of radioactive waste of low and medium activity, the final repositories for radioactive waste, based in cement materials are already operating in many countries. The isolation is performed by applying natural or artificial barriers between radioactive waste and man so as to prevent the release of radionuclides to the environment, until they have decreased their toxicity. The cement-based materials are involved in the different stages of the radioactive waste management since they are used for immobilization of waste in the container, container manufacturing and filling the spaces between the containers and vaults container and also as a barrier engineering and construction material in civil engineering. The concrete (cement mix + water + sand + gravel) it is one of the materials used to produce the engineered barrier system and produce containers for radioactive waste. In addition to their mechanical properties (product processing into hydraulic binder after being hydrated), their composition and solubility allow cushion the contact groundwater to ph higher (12.0 - 13.5) during considerable time scales (1014 - 1015 years) and it has an active role with the radionuclides confinement present in the radiological inventory of radioactive waste. The study of the microstructures of cement is a constant challenge for specialists working in this area, mainly due to the complex and heterogeneous mineralogical composition. Cement consists of many different phases in order to achieve specific properties such as reactivity properties, setting time

  5. Differential water mite parasitism, phenoloxidase activity, and resistance to mites are unrelated across pairs of related damselfly species.

    Directory of Open Access Journals (Sweden)

    Julia J Mlynarek

    Full Text Available Related host species often demonstrate differences in prevalence and/or intensity of infection by particular parasite species, as well as different levels of resistance to those parasites. The mechanisms underlying this interspecific variation in parasitism and resistance expression are not well understood. Surprisingly, few researchers have assessed relations between actual levels of parasitism and resistance to parasites seen in nature across multiple host species. The main goal of this study was to determine whether interspecific variation in resistance against ectoparasitic larval water mites either was predictive of interspecific variation in parasitism for ten closely related species of damselflies (grouped into five "species pairs", or was predicted by interspecific variation in a commonly used measure of innate immunity (total Phenoloxidase or potential PO activity. Two of five species pairs had interspecific differences in proportions of individuals resisting larval Arrenurus water mites, only one of five species pairs had species differences in prevalence of larval Arrenurus water mites, and another two of five species pairs showed species differences in mean PO activity. Within the two species pairs where species differed in proportion of individuals resisting mites the species with the higher proportion did not have correspondingly higher PO activity levels. Furthermore, the proportion of individuals resisting mites mirrored prevalence of parasitism in only one species pair. There was no interspecific variation in median intensity of mite infestation within any species pair. We conclude that a species' relative ability to resist particular parasites does not explain interspecific variation in parasitism within species pairs and that neither resistance nor parasitism is reflected by interspecific variation in total PO or potential PO activity.

  6. Consideration on thermodynamic data for predicting solubility and chemical species of elements in groundwater. Part 1: Tc, U, Am

    International Nuclear Information System (INIS)

    The solubility determines the release of radionuclides from waste form and is used as a source term in radionuclide migration analysis in performance assessment of radioactive waste repository. Complexations of radionuclides by ligands in groundwater affect the interaction between radionuclides and geologic media, thus affect their migration behavior. Thermodynamic data for Tc, Am and U were reviewed and compiled to be used for predicting the solubility and chemical species in groundwater. Thermodynamic data were reviewed with emphasis on the hydrolysis and carbonate complexation that can dominate the speciation in typical groundwater. Thermodynamic data for other species were selected based on existing database. Thermodynamic data for other important elements are under investigation, thus shown in an appendix for temporary use. (author)

  7. Consideration on thermodynamic data for predicting solubility and chemical species of elements in groundwater. Part 1: Tc, U, Am

    Energy Technology Data Exchange (ETDEWEB)

    Yamaguchi, Tetsuji; Takeda, Seiji [Japan Atomic Energy Research Inst., Tokai, Ibaraki (Japan). Tokai Research Establishment

    1999-01-01

    The solubility determines the release of radionuclides from waste form and is used as a source term in radionuclide migration analysis in performance assessment of radioactive waste repository. Complexations of radionuclides by ligands in groundwater affect the interaction between radionuclides and geologic media, thus affect their migration behavior. Thermodynamic data for Tc, Am and U were reviewed and compiled to be used for predicting the solubility and chemical species in groundwater. Thermodynamic data were reviewed with emphasis on the hydrolysis and carbonate complexation that can dominate the speciation in typical groundwater. Thermodynamic data for other species were selected based on existing database. Thermodynamic data for other important elements are under investigation, thus shown in an appendix for temporary use. (author)

  8. Efficient conversion of lignin into single chemical species by solvothermal reaction in water p-cresol solvent

    Science.gov (United States)

    Okuda, Kazuhide; Man, Xin; Umetsu, Mitsuo; Takami, Seiichi; Adschiri, Tadafumi

    2004-04-01

    Lignin was selectively converted into single chemical species in water-p-cresol mixtures at 673 K. Complete depression of char formation was realized in a mixture of 1.8 g of water and 2.5 g of p-cresol. The frame structure of lignin was efficiently decomposed within a reaction time of 4 min. The species obtained had a molecular weight of 214 (M+) assigned by gas chromatography-mass spectroscopy and was identified as hydroxylphenyl-(hydroxyltolyl)-methane (HPHTM) by 1H and 13C nuclear magnetic resonance. Its yield approached the maximum of 80% C at {\\sim } 30 min of reaction time. HPHTM was presumably produced by the addition of p-cresol at the most active C agr position of the hydroxyphenylpropane derivative that was formed by the hydrolysis of lignin.

  9. Efficient conversion of lignin into single chemical species by solvothermal reaction in water-p-cresol solvent

    International Nuclear Information System (INIS)

    Lignin was selectively converted into single chemical species in water-p-cresol mixtures at 673 K. Complete depression of char formation was realized in a mixture of 1.8 g of water and 2.5 g of p-cresol. The frame structure of lignin was efficiently decomposed within a reaction time of 4 min. The species obtained had a molecular weight of 214 (M+) assigned by gas chromatography-mass spectroscopy and was identified as hydroxylphenyl-(hydroxyltolyl)-methane (HPHTM) by 1H and 13C nuclear magnetic resonance. Its yield approached the maximum of 80% C at ∼ 30 min of reaction time. HPHTM was presumably produced by the addition of p-cresol at the most active C α position of the hydroxyphenylpropane derivative that was formed by the hydrolysis of lignin

  10. Strategies and chemical design approaches to reduce the potential for formation of reactive metabolic species.

    Science.gov (United States)

    Argikar, Upendra A; Mangold, James B; Harriman, Shawn P

    2011-01-01

    Metabolic activation of new chemical entities to reactive intermediates is routinely monitored in drug discovery and development. Reactive intermediates may bind to cellular macromolecules such as proteins, DNA and may eventually lead to cell death via necrosis, apoptosis or oxidative stress. The evidence that the ultimate outcome of metabolic activation is an adverse drug reaction manifested as in vivo toxicity, is at best circumstantial. However, understanding the process of bioactivation of structural alerts by trapping the reactive intermediates is critical to guide medicinal chemistry efforts in quest for safer and potent molecules. This commentary provides a brief introduction to adverse drug reactions and mechanisms of reactive intermediate formation for various functional groups, followed by a review of chemical design approaches, examples of such strategies, possible isosteric replacements for structural alerts and rationalization of laboratory approaches to determine reactive intermediates, as a guide to today's medicinal chemist. PMID:21320068

  11. The smell of change: warming affects species interactions mediated by chemical information

    Czech Academy of Sciences Publication Activity Database

    Sentis, Arnaud; Ramon-Portugal, F.; Brodeur, J.; Hemptinne, J.-L.

    2015-01-01

    Roč. 21, č. 10 (2015), s. 3586-3594. ISSN 1354-1013 Grant ostatní: European Social Fund(CZ) CZ.1.07/2.3.00/30.0049 Institutional support: RVO:60077344 Keywords : chemical communication * climate change * insects Subject RIV: EH - Ecology, Behaviour Impact factor: 8.044, year: 2014 http://onlinelibrary.wiley.com/doi/10.1111/gcb.12932/abstract

  12. Characterization of Conserved Toxicogenomic Responses in Chemically Exposed Hepatocytes across Species and Platforms

    OpenAIRE

    El-Hachem, Nehme; Grossmann, Patrick; Blanchet-Cohen, Alexis; Bateman, Alain R.; Bouchard, Nicolas; Archambault, Jacques; Hugo J.W.L. Aerts; Haibe-Kains, Benjamin

    2015-01-01

    Background: Genome-wide expression profiling is increasingly being used to identify transcriptional changes induced by drugs and environmental stressors. In this context, the Toxicogenomics Project–Genomics Assisted Toxicity Evaluation system (TG-GATEs) project generated transcriptional profiles from rat liver samples and human/rat cultured primary hepatocytes exposed to more than 100 different chemicals. Objectives: To assess the capacity of the cell culture models to recapitulate pathways i...

  13. CHEMICAL, PHYSICAL AND SENSORY ANALYSIS OF ACTIVITY DIFFERENT YEAST SPECIES ON IDENTICAL SUBSTRATE IN WINE PRODUCTION

    OpenAIRE

    Vladimír Vietoris; Hana Balková,Tatiana Bojňanská; Ľubomír Bennár; Peter Czako

    2013-01-01

    Rizling vlašský is the second most important variety in Slovakia. The science of wine production includes a summary of knowledge and experience in the field of grape growing and wine making, or the production of different types of wines using specific methods of production. Wine quality is the result of the interaction between yeast, bacteria and microscopic funguses. In this research, we studied the effects of active dry wine yeasts on chemical, physical and sensory parameters in wine produc...

  14. Chemical Constituents of Two Endemic Sideritis Species from Turkey with Antioxidant Activity

    Directory of Open Access Journals (Sweden)

    Gülaçtı Topçu

    2012-01-01

    Full Text Available In this study, two Sideritis species, endemic to Turkey, S. niveotomentosa Huber – Morathii, S.brevidens P.H. Davis have been studied for their diterpenic compounds and the antioxidant properties. Eight known diterpenoids, which have ent-kaurene skeleton, were isolated from acetone and methanol extracts of these species. The structures of the isolated diterpenes were determined by using the NMR ( 1H-NMR, 13C-NMR, COSY, HMQC, and HMBC spectroscopy. The analysis of the phenolic compounds of the extracts was performed by high performance liquid chromatography coupled to tandem mass spectrometry (LC-MS/MS. Also the antioxidant capacity of the extracts was investigated namely by two methods; free radical scavenging and β-carotene bleaching activities.

  15. Toward systems metabolic engineering of Aspergillus and Pichia species for the production of chemicals and biofuels

    DEFF Research Database (Denmark)

    Caspeta, Luis; Nielsen, Jens

    2013-01-01

    Recently genome sequence data have become available for Aspergillus and Pichia species of industrial interest. This has stimulated the use of systems biology approaches for large-scale analysis of the molecular and metabolic responses of Aspergillus and Pichia under defined conditions, which has...... resulted in much new biological information. Case-specific contextualization of this information has been performed using comparative and functional genomic tools. Genomics data are also the basis for constructing genome-scale metabolic models, and these models have helped in the contextualization of...... knowledge on the fundamental biology of Aspergillus and Pichia species. Furthermore, with the availability of these models, the engineering of Aspergillus and Pichia is moving from traditional approaches, such as random mutagenesis, to a systems metabolic engineering approach. Here we review the recent...

  16. Chemically emulsified crude oil as substrate for bacterial oxidation : differences in species response

    International Nuclear Information System (INIS)

    The ability of bacterial species to oxidize alkanes in crude oil in water emulsions was studied. Alkanes in crude oil need specific physiological adaptations to the microorganisms. Synthesis of biosurfactants has been considered as a prerequisite for either specific adhesion mechanisms to large oil drops or emulsification of oil followed by uptake of submicron oil droplets. In this study four bacterial species were tested. Emulsions were prepared by nonionic sorbitan ester and polyoxyethylene ether surfactants. The oxidation rates were measured. Both positive and negative effects of surfactant amendments were observed. The same surfactant affected different bacteria in different ways. The response to the surfactant amendment depended on the physiological state of the bacteria. The results showed that surfactants resulted in decreased cell adhesion to the oil phase for all the bacteria. 19 refs., 3 tabs., 4 figs

  17. Study of the chemical species of fluorine 18 produced by neutron irradiation of lithium aluminate

    International Nuclear Information System (INIS)

    In the present work, the chemical form of fluorine-18 obtained by means of the neutron irradiated lithium aluminate was studied, in order to know its chemical behavior and to observe if it volatilizes and adheres to the walls of a tritium distillation system; for this matter paper chromatography and high voltage electrophoresis techniques were used. Lithium aluminate was synthetized, being characterized as LiAlO2 which was irradiated with neutrons in order to produce fluorine-18. Lithium aluminate is a non-soluble solid, therefore fluorine produced may not be extracted, unless it is dissolved or extracted through the solid. So as not affect in a drastic way the chemical form, it was submitted to extraction processes, agitating the irradiated samples with different acids and basic solutions in order to analyze fluorine-18. The best extraction agent was found to be HCl, where two forms of fluorine-18 were found, one at the point of application, probably as a complex hexafluoride-aluminate and the other as a characteristic Rf of the fluorine ion. In the tritium distillation with helium as a carrier of a sample irradiated and heated up to 220-250oC, no volatile types of fluorine-18 were found, thus it can be considered that in commercial production of tritium by means of neutron irradiation of lithium aluminate, fluorine-18 is not a damaging pollutant of the equipment pipe system. (Author)

  18. Chemical Variation in a Dominant Tree Species: Population Divergence, Selection and Genetic Stability across Environments

    OpenAIRE

    Julianne M O'Reilly-Wapstra; Miller, Alison M.; Hamilton, Matthew G.; Dean Williams; Naomi Glancy-Dean; Potts, Brad M.

    2013-01-01

    Understanding among and within population genetic variation of ecologically important plant traits provides insight into the potential evolutionary processes affecting those traits. The strength and consistency of selection driving variability in traits would be affected by plasticity in differences among genotypes across environments (G×E). We investigated population divergence, selection and environmental plasticity of foliar plant secondary metabolites (PSMs) in a dominant tree species, Eu...

  19. Chemical Composition and Seasonality of Aromatic Mediterranean Plant Species by NMR-Based Metabolomics

    OpenAIRE

    Monica Scognamiglio; Brigida D’Abrosca; Assunta Esposito; Antonio Fiorentino

    2015-01-01

    An NMR-based metabolomic approach has been applied to analyse seven aromatic Mediterranean plant species used in traditional cuisine. Based on the ethnobotanical use of these plants, the approach has been employed in order to study the metabolic changes during different seasons. Primary and secondary metabolites have been detected and quantified. Flavonoids (apigenin, quercetin, and kaempferol derivatives) and phenylpropanoid derivatives (e.g., chlorogenic and rosmarinic acid) are the main id...

  20. Portuguese Thymbra and Thymus species volatiles: chemical composition and biological activities.

    Science.gov (United States)

    Figueiredo, A C; Barroso, J G; Pedro, L G; Salgueiro, L; Miguel, M G; Faleiro, M L

    2008-01-01

    Thymbra capitata and Thymus species are commonly known in Portugal as thyme and they are currently used as culinary herbs, as well as for ornamental, aromatizing and traditional medicinal purposes. The present work reports on the state of the art on the information available on the taxonomy, ethnobotany, cell and molecular biology of the Portuguese representatives of these genera and on the chemotaxonomy and antibacterial, antifungal and antioxidant activities of their essential oils and other volatile-containing extracts. PMID:19075695

  1. MORPHO-CHEMICAL DESCRIPTION AND ANTIMICROBIAL ACTIVITY OF DIFFERENT OCIMUM SPECIES

    OpenAIRE

    KAKARAPARTHI PANDU SASTRY; RAMACHANDRAN RAMESH KUMAR; ARIGARI NIRANJAN KUMAR; GOGTE SNEHA; MARGARET ELIZABETH

    2012-01-01

    Basil is a popular medicinal and culinary herb, and its essential oils have been used extensively for many years in food products, perfumery, dental and oral products. Basil essential oils and their principal constituents were found to exhibit antimicrobial activity against a wide range of Gram-negative and Gram-positive bacteria, yeast, and mould. The essential oils obtained from aerial parts of three different species of Ocimum comprising twenty one germplasm lines were investigated for the...

  2. Self-limitation as an explanation for species' relative abundances and the long-term persistence of rare species

    OpenAIRE

    Yenni, Glenda Marie

    2013-01-01

    Much of ecological theory describes species interactions. These interactions often play an important theoretical role in facilitating coexistence. In particular, rarity in ecological communities, though often observed, provides a significant challenge to theoretical and empirical ecologists alike. I use a plant community model to simulate the effect of stronger negative frequency dependence on the long-term persistence of the rare species in a simulated community. This strong self-limitation ...

  3. Microbial environment affects innate immunity in two closely related earthworm species Eisenia andrei and Eisenia fetida.

    Science.gov (United States)

    Dvořák, Jiří; Mančíková, Veronika; Pižl, Václav; Elhottová, Dana; Silerová, Marcela; Roubalová, Radka; Skanta, František; Procházková, Petra; Bilej, Martin

    2013-01-01

    Survival of earthworms in the environment depends on their ability to recognize and eliminate potential pathogens. This work is aimed to compare the innate defense mechanisms of two closely related earthworm species, Eisenia andrei and Eisenia fetida, that inhabit substantially different ecological niches. While E. andrei lives in a compost and manure, E. fetida can be found in the litter layer in forests. Therefore, the influence of environment-specific microbiota on the immune response of both species was followed. Firstly, a reliable method to discern between E. andrei and E. fetida based on species-specific primers for cytochrome c oxidase I (COI) and stringent PCR conditions was developed. Secondly, to analyze the immunological profile in both earthworm species, the activity and expression of lysozyme, pattern recognition protein CCF, and antimicrobial proteins with hemolytic function, fetidin and lysenins, have been assessed. Whereas, CCF and lysozyme showed only slight differences in the expression and activity, fetidin/lysenins expression as well as the hemolytic activity was considerably higher in E. andrei as compared to E. fetida. The expression of fetidin/lysenins in E. fetida was not affected upon the challenge with compost microbiota, suggesting more substantial changes in the regulation of the gene expression. Genomic DNA analyses revealed significantly higher level of fetidin/lysenins (determined using universal primer pairs) in E. andrei compared to E. fetida. It can be hypothesized that E. andrei colonizing compost as a new habitat acquired an evolutionary selection advantage resulting in a higher expression of antimicrobial proteins. PMID:24223917

  4. Relative abundance and species richness of cerambycid beetles in partial cut and uncut bottomland hardwood forests

    Science.gov (United States)

    Newell, P.; King, S.

    2009-01-01

    Partial cutting techniques are increasingly advocated and used to create habitat for priority wildlife. However, partial cutting may or may not benefit species dependent on deadwood; harvesting can supplement coarse woody debris in the form of logging slash, but standing dead trees may be targeted for removal. We sampled cerambycid beetles during the spring and summer of 2006 and 2007 with canopy malaise traps in 1- and 2-year-old partial cut and uncut bottomland hardwood forests of Louisiana. We captured a total of 4195 cerambycid beetles representing 65 species. Relative abundance was higher in recent partial cuts than in uncut controls and with more dead trees in a plot. Total species richness and species composition were not different between treatments. The results suggest partial cuts with logging slash left on site increase the abundance of cerambycid beetles in the first few years after partial cutting and that both partial cuts and uncut forest should be included in the bottomland hardwood forest landscape.

  5. Determination of Nutritional Value and Digestibility and Degradability of Twigs in Four Tree Species through Chemical and in situ (Nylon Bags Techniques

    Directory of Open Access Journals (Sweden)

    H. Yosefifar

    2012-07-01

    Full Text Available This study has been conducted in order to determine nutritional value and digestibility and degradability of twigs in four tree species including Zelkova carpinifolia, Gleditchia caspica, Populus deltoids and Quercus castanaefolia through chemical and in situ techniques using 3 fistulated sheep in National Research Institute for Animal Science, IRAN. The experiment conducted based on Randomized Complete Block Design and obtained data were analyzed by software SAS and Neway. Chemical compounds (crude protein (CP, Neutral Detergent Fiber (NDF, Acid Detergent Fiber (ADF, Ether Extract (EE, Ash, Crude Fiber (CF, NFC(Non Fiber Carbohydrate, Nitrogen Free Extract (NFE and organic material (OM and degradation (dry matter and protein were determined. Amount of crude protein for 4 species are as follow Z. carpinifolia (11%, G. caspica (15.4%, P. deltoids (10.3% and Q. castanaefolia (9.5%, also amount of crude fiber in these trees are respectively 32.7, 18.6, 13.9 and 22.9%. Survey conducted on species’ degradation and on amounts of dry matter and protein which disappear after 0, 4, 8, 16, 24, 48, 72 and 96 hours. Results of degradation in dry matter and protein showed that extent of degradation has been an uptrend over time of incubation and it follows a similar trend at all times. The most degradation of dry matter (80.6% and protein (91.6% are related to G. caspica and the least degradation of dry matter (36% and protein (38.4% are related to Q. castanaefolia. Results showed that as a replacement or a complementary for alfalfa, the four considered tree species can provide some parts of food requirements by livestock through a correct programming.

  6. On the relation between chemical composition and optical properties of detonation nanodiamonds

    KAUST Repository

    Kirmani, Ahmad R.

    2015-06-23

    The morphology and presence of impurities strongly influence mechanical, optical, electrical, and thermal properties of detonation nanodiamonds (DNDs). Here we report insights on the chemical composition and its effect on the optical properties of the DNDs obtained by rate-zonal density gradient ultracentrifugation. Herein, for the first time, a detailed valence band structure of as-prepared and oxidized DNDs is reported. Photoemission spectroscopy (PES) measurements demonstrate that the defects, originating from fullerene-like C bonding in the sp2 shells of the DNDs, are governing the literature-reported loss of the emission spectral features arising from the nitrogen-vacancy (NV) center excitations. X-ray photoelectron spectroscopy (XPS) measurements reveal that nitrogen is present in the DNDs in the form of N–O bonded species located at the surface region/sp2 shells, while in core of the DND it is in the form of N–C/N=C species.

  7. Compilation of Physicochemical and Toxicological Information About Hydraulic Fracturing-Related Chemicals (Draft Database)

    Science.gov (United States)

    The purpose of this product is to make accessible the information about the 1,173 hydraulic fracturing-related chemicals that were listed in the external review draft of the Hydraulic Fracturing Drinking Water Assessment that was released recently. The product consists of a serie...

  8. Available IMARES generated ecotoxicological data with relevance to petroleum related chemicals

    NARCIS (Netherlands)

    Vries, de P.; Klok, T.C.

    2011-01-01

    This document provides an overview of ecotoxicological tests of oil and oil-related chemicals performed by Imares. This meta-data overview was generated for the potential use of its underlying data in the ecotoxicological models in the SYMBIOSES model system.

  9. Chemical Composition and Antigerminative Activity of the Essential Oils from Five Salvia Species

    OpenAIRE

    Vincenzo De Feo; Enrica De Falco; Emilia Mancini; Graziana Roscigno; Laura De Martino

    2010-01-01

    The chemical composition of the essential oils of Salvia africana L., Salvia elegans Vahl, Salvia greggii A. Gray, Salvia mellifera Green and Salvia munzii Epling, cultivated in Eboli (Salerno, Southern Italy), was studied by means of GC and GC-MS analyses. In all, 88 compounds were identified, 54 for S. africana, accounting for 95.4% of the total oil, 55 for S. elegans (92.9%), 50 for S. greggii (96.9%), 54 for S. mellifera (90.4%) and 47 for S. munzii (97.5%), respectively. In S. africana,t...

  10. Multilocus phylogeny and MALDI-TOF analysis of the plant pathogenic species Alternaria dauci and relatives

    DEFF Research Database (Denmark)

    Brun, Sophie; Madrid, Hugo; Gerrits Van Den Ende, Bert; Andersen, Birgitte; Marinach-Patrice, Carine; Mazier, Dominique; De Hoog, G. Sybren

    2013-01-01

    The genus Alternaria includes numerous phytopathogenic species, many of which are economically relevant. Traditionally, identification has been based on morphology, but is often hampered by the tendency of some strains to become sterile in culture and by the existence of species-complexes of...... morphologically similar taxa. This study aimed to assess if strains of four closely-related plant pathogens, i.e., accurately Alternaria dauci (ten strains), Alternaria porri (six), Alternaria solani (ten), and Alternaria tomatophila (ten) could be identified using multilocus phylogenetic analysis and Matrix......-Assisted Laser Desorption Ionisation Time of Flight (MALDI-TOF) profiling of proteins. Phylogenetic analyses were performed on three loci, i.e., the internal transcribed spacer (ITS) region of rRNA, and the glyceraldehyde-3-phosphate dehydrogenase (gpd) and Alternaria major antigen (Alt a 1) genes. Phylogenetic...

  11. Development of Microsatellite Markers for Lagerstroemia indica (Lythraceae and Related Species

    Directory of Open Access Journals (Sweden)

    Yang Liu

    2013-02-01

    Full Text Available Premise of the study: Microsatellite markers were developed and characterized to analyze genetic diversity within Lagerstroemia cultivars and related species. Methods and Results: Using simple sequence repeat (SSR-enriched libraries, 11 species-specific polymorphic genomic SSRs were developed from L. indica ‘Hong Die Fei Wu’. All primers were tested on 48 L. indica individuals from China, the United States, and France. The primers amplified four to 12 alleles per locus, including di-, tri-, and tetranucleotide repeats. Observed and expected heterozygosities ranged from 0.1875 to 0.7609 and 0.2836 to 0.8385, respectively. The primers were also highly cross-transferrable to L. subcostata, L. limii, L. fauriei, L. caudata, and L. speciosa. Conclusions: The new primers will enlarge the bank of SSRs available to genetic research of Lagerstroemia. These SSR markers will facilitate population genetics and molecular marker-assisted selection of L. indica.

  12. Chemical constituents variations of essential oils from rhizomes of four Zingiberaceae species

    International Nuclear Information System (INIS)

    The essential oils were extracted using the hydrodistillation method from four Zingiberaceae species; Zingiber officinale var.rubrum, Zingiber amaricans, Kaempferia galanga, and Boesenbergia pandurata. Volatile components of all extracts were analyzed by gas chromatography-mass spectrometry (GC-MS) techniques. The major constituents of Zingiber officinale, Zingiber amaricans, Kaempferia galanga, and Boesenbergia pandurata were identified as E-citral (20.98%), zerumbone (40.70%), ethyl p -methoxycinnamate (58.47%) and camphor (57.97%), respectively. Kaempferia galanga and Zingiber amaricans were rich in sesquiterpenes whereas Boesenbergia pandurata and Zingiber officinale var. rubrum contained mostly monoterpenes. (author)

  13. Chemical composition of essential oil of Senecio coincyi, an endemic species of the Central Iberian Peninsula.

    Science.gov (United States)

    Arrabal, Carlos; Martínez García, Felipe; Paz Arraiza, María; Guerrero García, Silvia

    2011-01-01

    The essential oil has been studied of leaves of Senecio coincyi Rouy, an endemic species of Spain restricted to a very small area of the Central Iberian Peninsula. Samples from five locations were obtained by hydrodistillation and extraction and analysed by gas chromatography-mass spectrometry. The main compound was 1-tridecene (28.1 +/- 8.5%). The presence of unsaturated hydrocarbons (1-undecene, 1-dodecene and 1-tridecene) seems to indicate a chemotaxonomic relationship between Senecio coincyi and S. congestus. PMID:21366061

  14. Chromatographic speciation of Cr(III)-species, inter-species equilibrium isotope fractionation and improved chemical purification strategies for high-precision isotope analysis.

    Science.gov (United States)

    Larsen, K K; Wielandt, D; Schiller, M; Bizzarro, M

    2016-04-22

    Chromatographic purification of chromium (Cr), which is required for high-precision isotope analysis, is complicated by the presence of multiple Cr-species with different effective charges in the acid digested sample aliquots. The differing ion exchange selectivity and sluggish reaction rates of these species can result in incomplete Cr recovery during chromatographic purification. Because of large mass-dependent inter-species isotope fractionation, incomplete recovery can affect the accuracy of high-precision Cr isotope analysis. Here, we demonstrate widely differing cation distribution coefficients of Cr(III)-species (Cr(3+), CrCl(2+) and CrCl2(+)) with equilibrium mass-dependent isotope fractionation spanning a range of ∼1‰/amu and consistent with theory. The heaviest isotopes partition into Cr(3+), intermediates in CrCl(2+) and the lightest in CrCl2(+)/CrCl3°. Thus, for a typical reported loss of ∼25% Cr (in the form of Cr(3+)) through chromatographic purification, this translates into 185ppm/amu offset in the stable Cr isotope ratio of the residual sample. Depending on the validity of the mass-bias correction during isotope analysis, this further results in artificial mass-independent effects in the mass-bias corrected (53)Cr/(52)Cr (μ(53)Cr* of 5.2ppm) and (54)Cr/(52)Cr (μ(54)Cr* of 13.5ppm) components used to infer chronometric and nucleosynthetic information in meteorites. To mitigate these fractionation effects, we developed strategic chemical sample pre-treatment procedures that ensure high and reproducible Cr recovery. This is achieved either through 1) effective promotion of Cr(3+) by >5 days exposure to HNO3H2O2 solutions at room temperature, resulting in >∼98% Cr recovery for most types of sample matrices tested using a cationic chromatographic retention strategy, or 2) formation of Cr(III)-Cl complexes through exposure to concentrated HCl at high temperature (>120°C) for several hours, resulting in >97.5% Cr recovery using a

  15. Distribution and bioaccumulation of steroidal and phenolic endocrine disrupting chemicals in wild fish species from Dianchi Lake, China

    International Nuclear Information System (INIS)

    The distribution and bioaccumulation of steroidal and phenolic endocrine disrupting chemicals (EDCs) were studied in various tissues of wild fish species from Dianchi Lake, China. In muscle tissue, 4-tert-octylphenol, 4-cumylphenol, 4-nonlyphenol and bisphenol A were detected in fish from each sampling site, with maximal concentrations of 4.6, 4.4, 18.9 and 83.5 ng/g dry weight (dw), respectively. Steroids (estrone, 17β-estradiol 17α-ethynylestradiol and estriol) were found at lower levels (<11.3 ng/g dw) and less frequently in muscle samples. The highest concentrations of steroids and phenols were found in liver, followed by those in gill and the lowest concentration was found in muscle. The field bioconcentration factors (BCFs) of phenols were calculated in fish species ranged from 18 to 97. Moreover, the measured tissue concentrations were utilized in order to estimate water concentration of steroids (4.4-18.0 ng/L). These results showed that steroidal and phenolic EDCs were likely ubiquitous contaminants in wild fish. - Highlights: → We assess the occurrence of EDCs in wild fish from Dianchi Lake, China. → We investigate the distribution of steroidal and phenolic EDCs in fish tissues. → We estimate the bioaccumulation of wild fish to steroidal and phenolic EDCs. → Steroidal and phenolic EDCs are likely ubiquitous contaminants in wild fish. - Contaminants of endocrine disrupting chemicals in wild fish.

  16. Mimicking brain tissues by doping scatterers into gelatin tissue phantoms and determination of chemical species responsible for NMPPAS

    Science.gov (United States)

    Dahal, Sudhir; Cullum, Brian M.

    2012-06-01

    It has been shown that non-resonant multiphoton photoacoustic spectroscopy (NMPPAS) has a great potential to be used as a high resolution surgical guidance technique during brain tumor surgery due to its ability of non-invasive or minimally invasive tumor differentiation. However, for experimental purposes associated with method validation, the use of real tissues is not always ideal because of issues such as availability, safety, storage, chemical doping, necessary control of size and shape, etc. To overcome these issues, tissue phantoms made from animal tissues and/or biochemical constituents, are often employed for such analyses. This work demonstrates the ability to develop and characterize gelatin based tissue phantoms with comparable optical and acoustic properties to real tissues by doping the phantoms with a scattering substance, 0.3 μm diameter Al2O3 particles. Using these phantoms, light scattering coefficients (μs) of 39 cm-1 have been generated, which are comparable to real brain tissue, thus making them a great alternative to real tissue for validation studies. In addition, this work also investigates the non-fluorescent species NAD+ found in the tissues, to evaluate its potential for being detected by NMPPAS. NMPPAS spectra of NAD+ shows a very promising beginning to determine other chemical species such as flavins, collagen, tryptophan, etc responsible for NMPPAS spectral signatures, associated with tumorogenesis.

  17. Distribution and bioaccumulation of steroidal and phenolic endocrine disrupting chemicals in wild fish species from Dianchi Lake, China

    Energy Technology Data Exchange (ETDEWEB)

    Liu Jingliang; Wang Renmin; Huang Bin; Lin Chan; Wang Yu [Faculty of Environmental Science and Engineering, Kunming University of Science and Technology, Kunming, Yunnan 650093 (China); Pan Xuejun, E-mail: xjpan@kmust.edu.cn [Faculty of Environmental Science and Engineering, Kunming University of Science and Technology, Kunming, Yunnan 650093 (China)

    2011-10-15

    The distribution and bioaccumulation of steroidal and phenolic endocrine disrupting chemicals (EDCs) were studied in various tissues of wild fish species from Dianchi Lake, China. In muscle tissue, 4-tert-octylphenol, 4-cumylphenol, 4-nonlyphenol and bisphenol A were detected in fish from each sampling site, with maximal concentrations of 4.6, 4.4, 18.9 and 83.5 ng/g dry weight (dw), respectively. Steroids (estrone, 17{beta}-estradiol 17{alpha}-ethynylestradiol and estriol) were found at lower levels (<11.3 ng/g dw) and less frequently in muscle samples. The highest concentrations of steroids and phenols were found in liver, followed by those in gill and the lowest concentration was found in muscle. The field bioconcentration factors (BCFs) of phenols were calculated in fish species ranged from 18 to 97. Moreover, the measured tissue concentrations were utilized in order to estimate water concentration of steroids (4.4-18.0 ng/L). These results showed that steroidal and phenolic EDCs were likely ubiquitous contaminants in wild fish. - Highlights: > We assess the occurrence of EDCs in wild fish from Dianchi Lake, China. > We investigate the distribution of steroidal and phenolic EDCs in fish tissues. > We estimate the bioaccumulation of wild fish to steroidal and phenolic EDCs. > Steroidal and phenolic EDCs are likely ubiquitous contaminants in wild fish. - Contaminants of endocrine disrupting chemicals in wild fish.

  18. Species relations among wild Arachis species with the A genome as revealed by FISH mapping of rDNA loci and heterochromatin detection.

    Science.gov (United States)

    Robledo, G; Lavia, G I; Seijo, G

    2009-05-01

    Section Arachis of the homonymous genus includes 29 wild diploid species and two allotetraploids (A. monticola and the domesticated peanut, A. hypogaea L.). Although, three different genomes (A, B and D) have been proposed for diploid species with x = 10, they are still not well characterized. Moreover, neither the relationships among species within each genome group nor between diploids and tetraploids (AABB) are completely resolved. To tackle these issues, particularly within the A genome, in this study the rRNA genes (5S and 18S-26S) and heterochromatic bands were physically mapped using fluorescent in situ hybridization (FISH) in 13 species of Arachis. These molecular cytogenetic landmarks have allowed individual identification of a set of chromosomes and were used to construct detailed FISH-based karyotypes for each species. The bulk of the chromosome markers mapped revealed that, although the A genome species have a common karyotype structure, the species can be arranged in three groups (La Plata River Basin, Chiquitano, and Pantanal) on the basis of the variability observed in the heterochromatin and 18S-26S rRNA loci. Notably, these groups are consistent with the geographical co-distribution of the species. This coincidence is discussed on the basis of the particular reproductive traits of the species such as autogamy and geocarpy. Combined with geographic distribution of the taxa, the cytogenetic data provide evidence that A. duranensis is the most probable A genome ancestor of tetraploid species. It is expected that the groups of diploid species established, and their relation with the cultigen, may aid to rationally select wild species with agronomic traits desirable for peanut breeding programs. PMID:19234686

  19. Hawaiian native forest conserves water relative to timber plantation: species and stand traits influence water use.

    Science.gov (United States)

    Kagawa, Aurora; Sack, Lawren; Duarte, Ka'eo; James, Shelley

    2009-09-01

    Tropical forests are becoming increasingly alien-dominated through the establishment of timber plantations and secondary forests. Despite widespread recognition that afforestation results in increased evapotranspiration and lower catchment yields, little is known of the impacts of timber plantations on water balance relative to native forest. Native forest trees have been claimed to use water conservatively and enhance groundwater recharge relative to faster-growing alien species, and this argument should motivate native forest preservation and restoration. However, data have been available primarily for leaf-level gas exchange rather than for whole-plant and stand levels. We measured sap flow of dominant tree and tree fern species over eight weeks in native Metrosideros polymorpha forest and adjacent alien timber plantations on the island of Hawai'i and estimated total stand transpiration. Metrosideros polymorpha had the lowest values of sap flux density and whole-tree water use (200 kg m(-2) sapwood d(-1), or 8 kg/d for trees of 35 cm mean diameter at breast height, D), substantially less than timber species Eucalyptus saligna or Fraxinus uhdei (33 and 34 kg/d for trees of 73 and 30 cm mean D, respectively). At the stand level, E. saligna and F. uhdei trees had three- and ninefold higher water use, respectively, than native M. polymorpha trees. Understory Cibotium tree ferns were most abundant in M. polymorpha-dominated forest where they accounted for 70% of water use. Overall, F. uhdei plantation had the highest water use at 1.8 mm/d, more than twice that of either E. saligna plantation or M. polymorpha forest. Forest water use was influenced by species composition, stem density, tree size, sapwood allocation, and understory contributions. Transpiration varied strongly among forest types even within the same wet tropical climate, and in this case, native forest had strikingly conservative water use. Comparisons of vegetation cover in water use should provide

  20. Prevalence and Antibiotic Susceptibility of Salmonella species Isolated from Beef and its Related Samples in Techiman Municipality of Ghana

    OpenAIRE

    Frederick Adzitey; Joseph Kwame Nsoah; Gabriel Ayum Teye

    2015-01-01

    Salmonella species are important foodborne pathogens that have been implicated in a number of foodborne outbreaks. A total of 240 beef and its related samples obtained from the Techiman Municipality of Ghana were screened using the conventional method in the Food and Drug Administration-Bacteriological Analytical Manual (FDA-BAM)-USA. The overall prevalence of Salmonella species was 57.08%. The prevalence of Salmonella species ranged from 33.30% to 75.00% in the meat and its related samples (...

  1. Chemical and Biological Analyses of the Essential Oils and Main Constituents of Piper Species

    Directory of Open Access Journals (Sweden)

    Leonor Laura Leon

    2012-02-01

    Full Text Available The essential oils obtained from leaves of Piper duckei and Piper demeraranum by hydrodistillation were analyzed by gas chromatography-mass spectrometry. The main constituents found in P. demeraranum oil were limonene (19.3% and β-elemene (33.1% and in P. duckei oil the major components found were germacrene D (14.7% and trans-caryophyllene (27.1%. P. demeraranum and P. duckei oils exhibited biological activity, with IC50 values between 15 to 76 μg mL−1 against two Leishmania species, P. duckei oil being the most active. The cytotoxicity of the essential oils on mice peritoneal macrophage cells was insignificant, compared with the toxicity of pentamidine. The main mono- and sesquiterpene, limonene (IC50 = 278 μM and caryophyllene (IC50 = 96 μM, were tested against the strains of Leishmania amazonensis, and the IC50 values of these compounds were lower than those found for the essential oils of the Piper species. The HET-CAM test was used to evaluate the irritation potential of these oils as topical products, showing that these oils can be used as auxiliary medication in cases of cutaneous leishmaniasis, with less side effects and lower costs.

  2. Chemical composition of particles from traditional burning of Pakistani wood species

    Science.gov (United States)

    Shahid, Imran; Kistler, Magdalena; Mukhtar, Azam; Ramirez-Santa Cruz, Carlos; Bauer, Heidi; Puxbaum, Hans

    2015-11-01

    Total particulate matter (TPM) emitted during burning of three types of Pakistani wood (eucalyptus camaldulensis, local name Safeeda; acacia nilotica, local name Kikar, Babul; dalbergia sissoo, Shisham, Tali) in a traditional brick stove were collected and analyzed for anhydrosugars, sugar alcohols, trace metals, soluble ions and carbonaceous species. This is a first study reporting anhydrosugars in wood smoke particles emitted during traditional burning of common wood types in Pakistan. Carbonaceous species showed the highest contribution to the particulate matter. Although the total carbon (TC) contribution was similar for all burnings (64.8-70.2%), the EC/OC ratio varied significantly, from 0.2 to 0.3 for Accacia and Dalbergia to 0.7-0.8 for Eucalyptus and Wood-mix. Among inorganic constituents potassium chloride and silicon were found at levels higher than 1%. The levoglucosan concentrations ranged from 3.0 to 6.6% (average 5.6%) with the highest value for Accacia and lowest value for the wood-mix. The high levoglucosan/mannosan ratios of 20-28 were typical for hardwood. The ratio between levoglucosan and galactosan varied stronger and was found to be around 13-20 for Accacia, Eucalyptus and Wood mix, and 43 for Dalbergia. The determined levoglucosan concentrations allowed assessing the conversion factor for calculation of biomass smoke contribution to ambient particulate matter levels in Pakistan.

  3. A review on botanical species and chemical compounds with appetite suppressing properties for body weight control.

    Science.gov (United States)

    Astell, Katie J; Mathai, Michael L; Su, Xiao Q

    2013-09-01

    As obesity has reached epidemic proportions, the management of this global disease is of clinical importance. The availability and popularity of natural dietary supplements for the treatment of obesity has risen dramatically in recent years. The purpose of this paper was to review the effect of commonly available over the counter plant-derived supplements used to suppress appetite for obesity control and management. The data were obtained from the electronic databases PubMed, SpringerLink, Google Scholar, ScienceDirect, and MEDLINE with full text (via EBSCOHost) and the databases were accessed during late 2012 - early January 2013. The botanical species discussed in this review include Camellia sinensis, Caralluma fimbriata, Citrus aurantium, Coleus forskohlii, Garcinia cambogia and Phaseolus vulgaris. This review found that many botanical species including crude extracts and isolated compounds from plants have been shown to provide potentially promising therapeutic effects including appetite control and weight loss. However, many of these crude extracts and compounds need to be further investigated to define the magnitude of the effects, optimal dosage, mechanisms of action, long term safety, and potential side effects. PMID:23666454

  4. Pyrite oxidation by hexavalent chromium: investigation of the chemical processes by monitoring of aqueous metal species.

    Science.gov (United States)

    Demoisson, Frédéric; Mullet, Martine; Humbert, Bernard

    2005-11-15

    Pyrite, an iron sulfide, occurs in many soils and sediments, making it an important natural reductant of toxic metal pollutants. This study investigated the processes leading to aqueous Cr(VI) reduction by pyrite in a closed thermostated (25 +/- 0.1 degrees C) system and under an argon atmosphere. Synthetic pyrite suspensions were reacted with a range of Cr(VI) solutions from 0 to 7 x 10(-4) M and at pH 2-8. Metal species concentrations were continuously monitored during a period lasting approximately 20 h. Preliminary experiments carried out in acidic media without Cr(VI) have shown that some pyrite dissolution occurred. Then, metal species concentration changes with time during pyrite oxidation by Cr(VI) solutions exhibited two distinct trends depending on the complete or incomplete Cr(VI) removal. As long as chromate existed in solution, the Cr-(Ill) to Fe(lIl) ratio was found to be an effective parameter to investigate the pyrite reaction stoichiometry with Cr(VI). Experimental values close to 2 suggest that sulfur compounds with oxidation states between 0 and 2 should be formed during pyrite oxidation by Cr(VI). If Cr(VI) was completely reduced from solution, then the pyrite oxidation by Fe(lll) ions took place to generate ferrous ions. PMID:16323772

  5. Aerosol-halogen interaction: Change of physico-chemical properties of SOA by naturally released halogen species

    Science.gov (United States)

    Ofner, J.; Balzer, N.; Buxmann, J.; Grothe, H.; Krüger, H.; Platt, U.; Schmitt-Kopplin, P.; Zetzsch, C.

    2011-12-01

    Reactive halogen species are released by various sources like photo-activated sea-salt aerosol or salt pans and salt lakes. These heterogeneous release mechanisms have been overlooked so far, although their potential of interaction with organic aerosols like Secondary Organic Aerosol (SOA), Biomass Burning Organic Aerosol (BBOA) or Atmospheric Humic LIke Substances (HULIS) is completely unknown. Such reactions can constitute sources of gaseous organo-halogen compounds or halogenated organic particles in the atmospheric boundary layer. To study the interaction of organic aerosols with reactive halogen species (RHS), SOA was produced from α-pinene, catechol and guaiacol using an aerosol smog-chamber. The model SOAs were characterized in detail using a variety of physico-chemical methods (Ofner et al., 2011). Those aerosols were exposed to molecular halogens in the presence of UV/VIS irradiation and to halogens, released from simulated natural halogen sources like salt pans, in order to study the complex aerosol-halogen interaction. The heterogeneous reaction of RHS with those model aerosols leads to different gaseous species like CO2, CO and small reactive/toxic molecules like phosgene (COCl2). Hydrogen containing groups on the aerosol particles are destroyed to form HCl or HBr, and a significant formation of C-Br bonds could be verified in the particle phase. Carbonyl containing functional groups of the aerosol are strongly affected by the halogenation process. While changes of functional groups and gaseous species were visible using FTIR spectroscopy, optical properties were studied using Diffuse Reflectance UV/VIS spectroscopy. Overall, the optical properties of the processed organic aerosols are significantly changed. While chlorine causes a "bleaching" of the aerosol particles, bromine shifts the maximum of UV/VIS absorption to the red end of the UV/VIS spectrum. Further physico-chemical changes were recognized according to the aerosol size-distributions or the

  6. BioCreative V CDR task corpus: a resource for chemical disease relation extraction.

    Science.gov (United States)

    Li, Jiao; Sun, Yueping; Johnson, Robin J; Sciaky, Daniela; Wei, Chih-Hsuan; Leaman, Robert; Davis, Allan Peter; Mattingly, Carolyn J; Wiegers, Thomas C; Lu, Zhiyong

    2016-01-01

    Community-run, formal evaluations and manually annotated text corpora are critically important for advancing biomedical text-mining research. Recently in BioCreative V, a new challenge was organized for the tasks of disease named entity recognition (DNER) and chemical-induced disease (CID) relation extraction. Given the nature of both tasks, a test collection is required to contain both disease/chemical annotations and relation annotations in the same set of articles. Despite previous efforts in biomedical corpus construction, none was found to be sufficient for the task. Thus, we developed our own corpus called BC5CDR during the challenge by inviting a team of Medical Subject Headings (MeSH) indexers for disease/chemical entity annotation and Comparative Toxicogenomics Database (CTD) curators for CID relation annotation. To ensure high annotation quality and productivity, detailed annotation guidelines and automatic annotation tools were provided. The resulting BC5CDR corpus consists of 1500 PubMed articles with 4409 annotated chemicals, 5818 diseases and 3116 chemical-disease interactions. Each entity annotation includes both the mention text spans and normalized concept identifiers, using MeSH as the controlled vocabulary. To ensure accuracy, the entities were first captured independently by two annotators followed by a consensus annotation: The average inter-annotator agreement (IAA) scores were 87.49% and 96.05% for the disease and chemicals, respectively, in the test set according to the Jaccard similarity coefficient. Our corpus was successfully used for the BioCreative V challenge tasks and should serve as a valuable resource for the text-mining research community.Database URL: http://www.biocreative.org/tasks/biocreative-v/track-3-cdr/. PMID:27161011

  7. Arabidopsis transcriptional responses differentiating closely related chemicals (herbicides) and cross-species extrapolation to Brassica

    Science.gov (United States)

    Using whole genome Affymetrix ATH1 GeneChips we characterized the transcriptional response of Arabidopsis thaliana Columbia 24 hours after treatment with five different herbicides. Four of them (chloransulam, imazapyr, primisulfuron, sulfometuron) inhibit acetolactate synthase (A...

  8. Species richness and relative abundance of breeding birds in forests of the Mississippi Alluvial Valley

    Science.gov (United States)

    Nelms, C.O.; Twedt, D.J.

    1993-01-01

    In 1992, the Vicksburg Field Research Station of the National Wetlands Research Center initiated research on the ecology of migratory birds within forests of the Mississippi Alluvial Valley (MAV). The MAV was historically a nearly contiguous bottomland hardwood forest, however, only remnants remain. These remnants are fragmented and often influenced by drainage projects, silviculture, agriculture, and urban development. Our objectives are to assess species richness and relative abundance, and to relate these to the size, quality, and composition of forest stands. Species richness and relative abundance were estimated for 53 randomly selected forest sites using 1 to 8 point counts per site, depending on the size of the forest fragment. However, statistical comparisons among sites will be restricted to an equal number ofpoint counts within the sites being compared. Point counts, lasting five minutes, were conducted from 11 May to 29 June 1992, foltowing Ralph, Sauer, and Droege (Point Count Standards; memo dated 9 March 1992). Vegetation was measured at the first three points on each site using a modification of the methods employed by Martin and Roper (Condor 90: 5 1-57; 1988). During 252 counts, 7 1 species were encountered, but only 62 species were encountered within a 50-m radius of point center. The mean number of species encountered within 50 m of a point, was 7.3 (s.d. = 2.7) and the mean number of individuals was 11.2 (s.d. = 4.2). The mean number of species detected at any distance was 9.6 (s.d, = 2.8) and the mean number of individuals was 15.6 (s.d. = 7.9). The most frequently encountered warblers in the MAV were Prothonotary Warbler and Northern Parula. Rarely encountered warblers were American Redstart and Worm-eating Warbler. The genera, Quercus, Ulmus, Carya, and Celtis were each encountered at 80 or more of the 152 points at which vegetation was sampled. Species most frequentlyencountered were: sugarberry (Celtis laevagata), water hickory (Caqa

  9. Chemical composition and larvicidal activity of essential oil from Mentha spicata (Linn.) against three mosquito species.

    Science.gov (United States)

    Govindarajan, M; Sivakumar, R; Rajeswari, M; Yogalakshmi, K

    2012-05-01

    Mosquitoes are blood-feeding insects and serve as the most important vectors for spreading human diseases such as malaria, yellow fever, dengue fever, and filariasis. The continued use of synthetic insecticides has resulted in resistance in mosquitoes. Synthetic insecticides are toxic and affect the environment by contaminating soil, water, and air, and then natural products may be an alternative to synthetic insecticides because they are effective, biodegradable, eco-friendly, and safe to environment. Botanical origin may serve as suitable alternative biocontrol techniques in the future. Mentha spicata, an edible and medicinal plant, is chiefly distributed in Southeast Asia and South Asia. In the present study, the toxicity of mosquito larvicidal activity of leaf essential oil (EO) and their major chemical constituents from Mentha spicata against Culex quinquefasciatus, Aedes aegypti, and Anopheles stephensi. The chemical composition of the leaf EO was analyzed using gas chromatography-mass spectroscopy (GC-MS). GC-MS revealed that the EO of M. spicata contained 18 compounds. The major chemical components identified were carvone (48.60%), cis-carveol (21.30%), and limonene (11.30%). The EO had a significant toxic effect against early third-stage larvae of C. quinquefasciatus, A. aegypti, and A. stephensi with LC(50) values of 62.62, 56.08, and 49.71 ppm and LC(90) values of 118.70, 110.28, and 100.99 ppm, respectively. The three major pure constituents extracted from the M. spicata leaf EO were also tested individually against three mosquito larvae. The LC(50) values of carvone, cis-carveol, and limonene appeared to be most effective against A. stephensi (LC(50) 19.33, 28.50, and 8.83 ppm) followed by A. aegypti (LC(50) 23.69, 32.88, and 12.01 ppm), and C. quinquefasciatus (LC(50) 25.47, 35.20, and 14.07 ppm). The results could be useful in search for newer, safer, and more effective natural larvicidal agents against C. quinquefasciatus, A. aegypti, and A

  10. CHEMICALS

    CERN Multimedia

    Medical Service

    2002-01-01

    It is reminded that all persons who use chemicals must inform CERN's Chemistry Service (TIS-GS-GC) and the CERN Medical Service (TIS-ME). Information concerning their toxicity or other hazards as well as the necessary individual and collective protection measures will be provided by these two services. Users must be in possession of a material safety data sheet (MSDS) for each chemical used. These can be obtained by one of several means : the manufacturer of the chemical (legally obliged to supply an MSDS for each chemical delivered) ; CERN's Chemistry Service of the General Safety Group of TIS ; for chemicals and gases available in the CERN Stores the MSDS has been made available via EDH either in pdf format or else via a link to the supplier's web site. Training courses in chemical safety are available for registration via HR-TD. CERN Medical Service : TIS-ME :73186 or service.medical@cern.ch Chemistry Service : TIS-GS-GC : 78546

  11. Chemical composition and antifungal properties of essential oils of three Pistacia species.

    Science.gov (United States)

    Duru, M E; Cakir, A; Kordali, S; Zengin, H; Harmandar, M; Izumi, S; Hirata, T

    2003-02-01

    The chemical composition of essential oils obtained from the leaves of Pistacia vera, Pistacia terebinthus, Pistacia lentiscus and the resin of Pistacia lentiscus were analyzed by GC and GC-MS. alpha-Pinene, beta-pinene, limonene, terpinen-4-ol and alpha-terpineol were found to be the major components. The antifungal activities of the above oils and P. lentiscus resin (total, acidic and neutral fractions) against the growth of three agricultural pathogens, Pythium ultimum, Rhizoctonia solani and Fusarium sambucinum were evaluated. Some doses of P. terebinthus, P. vera and P. lentiscus leaf oils and total and neutral fraction of P. lentiscus resin significantly inhibited the growth of R. solani. However, all samples did not show antifungal activity against P. ultimum and F. sambucinum, but increased the growth of F. sambucinum. PMID:12628418

  12. Transient analysis of diffusive chemical reactive species for couple stress fluid flow over vertical cylinder

    Institute of Scientific and Technical Information of China (English)

    H. P. RANI; G. J. REDDY; C. N. KIM

    2013-01-01

    The unsteady natural convective couple stress fluid flow over a semi-infinite vertical cylinder is analyzed for the homogeneous first-order chemical reaction effect. The couple stress fluid flow model introduces the length dependent effect based on the material constant and dynamic viscosity. Also, it introduces the biharmonic operator in the Navier-Stokes equations, which is absent in the case of Newtonian fluids. The solution to the time-dependent non-linear and coupled governing equations is carried out with an unconditionally stable Crank-Nicolson type of numerical schemes. Numerical results for the transient flow variables, the average wall shear stress, the Nusselt number, and the Sherwood number are shown graphically for both generative and destructive reactions. The time to reach the temporal maximum increases as the reaction constant K increases. The average values of the wall shear stress and the heat transfer rate decrease as K increases, while increase with the increase in the Sherwood number.

  13. Chemical composition and biological activities of the essential oils from two Pereskia species grown in Brazil.

    Science.gov (United States)

    Souza, Lucéia Fatima; De Barros, Ingrid Bergman Inchausti; Mancini, Emilia; De Martino, Laura; Scandolera, Elia; De Feo, Vincenzo

    2014-12-01

    The chemical composition of the essential oils of Pereskia aculeata Mill. and P. grandifolia Haw. (Cactaceae), grown in Brazil, was studied by means of GC and GC-MS. In all, 37 compounds were identified, 30 for P. aculeata and 15 for P. grandifolia. Oxygenated diterpenes are the main constituents, both in the oil ofP. grandifolia (55.5%) and in that ofP. aculeata (29.4%). The essential oils were evaluated for their in vitro phytotoxic activity against germination and initial radicle growth of Raphanus sativus L., Sinapis arvensis L., and Phalaris canariensis L. seeds. The essential oil of P. grandifolia, at all doses tested, significantly inhibited the radicle elongation of R. sativus. Moreover, the antimicrobial activity of the essential oils was assayed against ten bacterial strains. The essential oils showed weak inhibitory activity against the Gram-positive pathogens. PMID:25632490

  14. Modeling of photolysis rates over Europe: impact on chemical gaseous species and aerosols

    Science.gov (United States)

    Real, E.; Sartelet, K.

    2011-02-01

    This paper evaluates the impact of photolysis rate calculation on simulated European air composition and air quality. In particular, the impact of the cloud parametrisation and the impact of aerosols on photolysis rates are analysed. Photolysis rates are simulated using the Fast-JX photolysis scheme and gas and aerosol concentrations over Europe are simulated with the regional chemistry-transport model Polair3D of the Polyphemus platform. The photolysis scheme is first used to update the clear-sky tabulation of photolysis rates used in the previous Polair3D version. Important differences in photolysis rates are simulated, mainly due to updated cross-sections and quantum yields in the Fast-JX scheme. In the previous Polair3D version, clouds were taken into account by multiplying the clear-sky photolysis rates by a correction factor. In the new version, clouds are taken into account more accurately by simulating them directly in the photolysis scheme. Differences in photolysis rates inside clouds can be large but outside clouds, and especially at the ground, differences are small. To take into account the impact of aerosols on photolysis rates, Polair3D and Fast-JX are coupled. Photolysis rates are updated every hour. Large impact on photolysis rates is observed at the ground, decreasing with altitude. The aerosol specie that impact the most photolysis rates is dust especially in south Europe. Strong impact is also observed over anthropogenic emission regions (Paris, The Po and the Ruhr Valley) where mainly nitrate and sulphate reduce the incoming radiation. Differences in photolysis rates lead to changes in gas concentrations, with the largest impact simulated on OH and NO concentrations. At the ground, monthly mean concentrations of both species are reduced over Europe by around 10 to 14% and their tropospheric burden by around 10%. The decrease in OH leads to an increase of the life-time of several species such as VOC. NO2 concentrations are not strongly impacted

  15. Evolution of chemical species during electrodeposition of uranium for alpha spectrometry by the Hallstadius method

    Energy Technology Data Exchange (ETDEWEB)

    Beesley, A.M. [School of Chemical Engineering and Analytical Science, University of Manchester, Sackville Street, Manchester, M60 1QD (United Kingdom); Crespo, M.T. [CIEMAT, Avda. Complutense, 22, 28040, Madrid (Spain)], E-mail: teresa.crespo@ciemat.es; Weiher, N.; Tsapatsaris, N. [School of Chemical Engineering and Analytical Science, University of Manchester, Sackville Street, Manchester, M60 1QD (United Kingdom); Cozar, J.S. [CIEMAT, Avda. Complutense, 22, 28040, Madrid (Spain); Esparza, H.; Mendez, C.G. [Centro de Investigacion en Materiales Avanzados (CIMAV), Miguel de Cervantes 120, Complejo Ind. Chihuahua, Chihuahua, Chih. CP 31109 (Mexico); Hill, P. [School of Chemical Engineering and Analytical Science, University of Manchester, Sackville Street, Manchester, M60 1QD (United Kingdom); Schroeder, S.L.M. [School of Chemical Engineering and Analytical Science, University of Manchester, Sackville Street, Manchester, M60 1QD (United Kingdom); School of Chemistry, University of Manchester, Oxford Road, Manchester, M13 9PL (United Kingdom); Montero-Cabrera, M.E. [Centro de Investigacion en Materiales Avanzados (CIMAV), Miguel de Cervantes 120, Complejo Ind. Chihuahua, Chihuahua, Chih. CP 31109 (Mexico)

    2009-09-15

    The morphology and composition of uranium alpha sources with co-deposited platinum have been investigated by scanning electron microscopy (SEM) with energy dispersive X-ray fluorescence analysis (EDX), X-ray photoelectron spectroscopy (XPS) and X-ray absorption fine structure (XAFS) studies. Combined SEM and EDX measurements reveal the effect of porous platinum on the morphology of the sources which in turn affects their alpha-spectral resolution. The XPS analysis suggests that the presence of platinum initially increases the concentration of hydroxyl species in the deposits, which then act as centres for subsequent preferential uranium precipitation. XPS and XAFS analysis also provide for first time an indication of oxidation states of uranium present in the sources prepared by the Hallstadius method. These results are in line with Hansen's theory of electrodeposition of actinides.

  16. Evolution of chemical species during electrodeposition of uranium for alpha spectrometry by the Hallstadius method

    International Nuclear Information System (INIS)

    The morphology and composition of uranium alpha sources with co-deposited platinum have been investigated by scanning electron microscopy (SEM) with energy dispersive X-ray fluorescence analysis (EDX), X-ray photoelectron spectroscopy (XPS) and X-ray absorption fine structure (XAFS) studies. Combined SEM and EDX measurements reveal the effect of porous platinum on the morphology of the sources which in turn affects their alpha-spectral resolution. The XPS analysis suggests that the presence of platinum initially increases the concentration of hydroxyl species in the deposits, which then act as centres for subsequent preferential uranium precipitation. XPS and XAFS analysis also provide for first time an indication of oxidation states of uranium present in the sources prepared by the Hallstadius method. These results are in line with Hansen's theory of electrodeposition of actinides.

  17. A chemical probe technique for the determination of reactive halogen species in aqueous solution: Part 1 – bromide solutions

    Directory of Open Access Journals (Sweden)

    C. Anastasio

    2006-02-01

    Full Text Available Reactive halogen species (X*=X●, ●X2−, X2 and HOX, where X=Br, Cl, or I in seawater, sea-salt particles, and snowpacks play important roles in the chemistry of the marine boundary layer. Despite this, relatively little is known about the steady-state concentrations or kinetics of reactive halogens in these environmental samples. In part this is because there are few instruments or techniques that can be used to characterize aqueous reactive halogens. To better understand this chemistry, we have developed a chemical probe technique that can detect and quantify aqueous reactive bromine and chlorine species (Br*(aq and Cl*(aq. This technique is based on the reactions of short-lived X*(aq species with allyl alcohol (CH2=CHCH2OH to form stable 3-halo-1,2-propanediols that are analyzed by gas chromatography. Using this technique in conjunction with competition kinetics allows determination of the steady state concentrations of the aqueous reactive halogens and, in some cases, the rates of formation and lifetimes of X* in aqueous solutions. We report here the results of the method development for aqueous solutions containing only bromide (Br−.

  18. Chemical Constituents and Structural Characterization of Polysaccharides from Four Typical Bamboo Species Leaves

    Directory of Open Access Journals (Sweden)

    Cheng-Zhang Wang

    2015-03-01

    Full Text Available In order to find bamboo leaves with high contents of bioactive polysaccharides, 32 samples were chosen to analyze their polysaccharide content by GC and sulfuric acid-anthrone colorimetric assays. Purified polysaccharides (BLPS were separated from the four varieties P. nigra (Lodd. Munro (PN, P. vivax McClure (PV, Chimonobambusa quadrangularis (Fenzi Makino (CQ, and P. bambussoides cv. Tanakae (PB by ultrasound extraction, solution precipitation, ion exchange resin, DEAE-52 and Sephadex G-100 chromatography. BLPS structural characterization was accomplished by HPLC-GPC, Fourier transform infra-red spectroscopy (FTIR and NaIO4-HIO4 oxidation reactions. The results showed that the total polysaccharides of the bamboo leaves in samples 1–32 ranged between 1.4% and 5.4%, Samples No. 29–No. 32 (PN, PV, CQ, and PB contained 2–3 fold more polysaccharides than No. 1~No. 28 among the 32 different species, particularly the content of galactose was in a range of 21.5%–34.1% for these four typical bamboo species leaves, which was also more than 2–3 fold higher than in No. 1–No. 28. Sugar analysis indicated that PN-PBLPS-1, PV-PBLPS-1, CQ-PBLPS-1 and PB-PBLPS-1 from the four varieties were homogeneous polysaccharides with molecular weights of 2.04 × 104, 1.15 × 104, 8.75 × 104 and 1.48 × 104 Da, respectively. PB-PBLPS-1 was a mixture of α-galactopyranose and β-d-glucopyranose linkages with α-(1→6 or β-(1→6glycosidic bonds, while PN-PBLPS-1, PV-PBLPS-1, and CQ-PBLPS-1 had α galactopyranose linkages with α-(1→6 glycosidic bonds.

  19. Relative adherence of Bacteroides species and strains to Actinomyces viscosus on saliva-coated hydroxyapatite

    International Nuclear Information System (INIS)

    The study was designed to compare the adherence of several Bacteroides species to A. viscosus. Using 3H, we labeled 24 laboratory strains, including 13 Bacteroides species and 11 fresh clinical isolates of three Bacteroides species. Their adherence to A. viscosus bound to a saliva-coated mineral surface was quantified by liquid scintillation. Adherence relative to a standard strain, B. gingivalis 2561, was compared. Among the lab bacteroides, those of B. gingivalis (eight strains) were the greatest binders (mean, 80.5 ± 12.4%). Strains of other lab bacteroides bound less well (mean, 33.4 ± 6.3%). The difference in means was statistically significant (p less than 0.01). The mean for B. gingivalis strains was also significantly greater than that for strains of B. intermedius (51.7 ± 6.2%). Attachment of B. gingivalis was saturable in experiments in which either input concentration or time was the independent variable, indicating that B. gingivalis cells do not accumulate in this vitro simulation of plaque formation by binding to each other. Subculture did not seem to affect the degree of binding

  20. Ethical and Animal Welfare Considerations in Relation to Species Selection for Animal Experimentation.

    Science.gov (United States)

    Webster, John

    2014-01-01

    Ethical principles governing the conduct of experiments with animals are reviewed, especially those relating to the choice of species. Legislation requires that the potential harm to animals arising from any procedure should be assessed in advance and justified in terms of its possible benefit to society. Potential harms may arise both from the procedures and the quality of the animals' lifetime experience. The conventional approach to species selection is to use animals with the "lowest degree of neurophysiological sensitivity". However; this concept should be applied with extreme caution in the light of new knowledge. The capacity to experience pain may be similar in mammals, birds and fish. The capacity to suffer from fear is governed more by sentience than cognitive ability, so it cannot be assumed that rodents or farm animals suffer less than dogs or primates. I suggest that it is unethical to base the choice of species for animal experimentation simply on the basis that it will cause less distress within society. A set of responsibilities is outlined for each category of moral agent. These include regulators, operators directly concerned with the conduct of scientific experiments and toxicology trials, veterinarians and animal care staff; and society at large. PMID:26479009

  1. Stream salamander species richness and abundance in relation to environmental factors in Shenandoah National Park, Virginia

    Science.gov (United States)

    Grant, E.H.C.; Jung, R.E.; Rice, K.C.

    2005-01-01

    Stream salamanders are sensitive to acid mine drainage and may be sensitive to acidification and low acid neutralizing capacity (ANC) of a watershed. Streams in Shenandoah National Park, Virginia, are subject to episodic acidification from precipitation events. We surveyed 25 m by 2 m transects located on the stream bank adjacent to the water channel in Shenandoah National Park for salamanders using a stratified random sampling design based on elevation, aspect and bedrock geology. We investigated the relationships of four species (Eurycea bislineata, Desmognathus fuscus, D. monticola and Gyrinophilus porphyriticus) to habitat and water quality variables. We did not find overwhelming evidence that stream salamanders are affected by the acid-base status of streams in Shenandoah National Park. Desmognathus fuscus and D. monticola abundance was greater both in streams that had a higher potential to neutralize acidification, and in higher elevation (>700 m) streams. Neither abundance of E. bislineata nor species richness were related to any of the habitat variables. Our sampling method preferentially detected the adult age class of the study species and did not allow us to estimate population sizes. We suggest that continued monitoring of stream salamander populations in SNP will determine the effects of stream acidification on these taxa.

  2. Ethical and Animal Welfare Considerations in Relation to Species Selection for Animal Experimentation

    Directory of Open Access Journals (Sweden)

    John Webster

    2014-12-01

    Full Text Available Ethical principles governing the conduct of experiments with animals are reviewed, especially those relating to the choice of species. Legislation requires that the potential harm to animals arising from any procedure should be assessed in advance and justified in terms of its possible benefit to society. Potential harms may arise both from the procedures and the quality of the animals’ lifetime experience. The conventional approach to species selection is to use animals with the “lowest degree of neurophysiological sensitivity”. However; this concept should be applied with extreme caution in the light of new knowledge. The capacity to experience pain may be similar in mammals, birds and fish. The capacity to suffer from fear is governed more by sentience than cognitive ability, so it cannot be assumed that rodents or farm animals suffer less than dogs or primates. I suggest that it is unethical to base the choice of species for animal experimentation simply on the basis that it will cause less distress within society. A set of responsibilities is outlined for each category of moral agent. These include regulators, operators directly concerned with the conduct of scientific experiments and toxicology trials, veterinarians and animal care staff; and society at large.

  3. Molecular characterization of various trichomonad species isolated from humans and related mammals in Indonesia.

    Science.gov (United States)

    Kamaruddin, Mudyawati; Tokoro, Masaharu; Rahman, Md Moshiur; Arayama, Shunsuke; Hidayati, Anggi P N; Syafruddin, Din; Asih, Puji B S; Yoshikawa, Hisao; Kawahara, Ei

    2014-10-01

    Trichomonad species inhabit a variety of vertebrate hosts; however, their potential zoonotic transmission has not been clearly addressed, especially with regard to human infection. Twenty-one strains of trichomonads isolated from humans (5 isolates), pigs (6 isolates), rodents (6 isolates), a water buffalo (1 isolate), a cow (1 isolate), a goat (1 isolate), and a dog (1 isolate) were collected in Indonesia and molecularly characterized. The DNA sequences of the partial 18S small subunit ribosomal RNA (rRNA) gene or 5.8S rRNA gene locus with its flanking regions (internal transcribed spacer region, ITS1 and ITS2) were identified in various trichomonads; Simplicimonas sp., Hexamastix mitis, and Hypotrichomonas sp. from rodents, and Tetratrichomonas sp. and Trichomonas sp. from pigs. All of these species were not detected in humans, whereas Pentatrichomonas hominis was identified in humans, pigs, the dog, the water buffalo, the cow, and the goat. Even when using the high-resolution gene locus of the ITS regions, all P. hominis strains were genetically identical; thus zoonotic transmission between humans and these closely related mammals may be occurring in the area investigated. The detection of Simplicimonas sp. in rodents (Rattus exulans) and P. hominis in water buffalo in this study revealed newly recognized host adaptations and suggested the existence of remaining unrevealed ranges of hosts in the trichomonad species. PMID:25352694

  4. Genetic Differentiations among the Populations of Salvia japonica (Lamiaceae and Its Related Species

    Directory of Open Access Journals (Sweden)

    SUDARMONO

    2008-03-01

    Full Text Available Morphological and genetic variations within Salvia japonica (Lamiaceae and its related species in Japan were analyzed for clarifying their taxonomic significance. The genetic variations were explored through chloroplast and nuclear ribosomal DNA sequences and allozyme polymorphisms. Since chromosome numbers characterized the genus of Salvia, we also examined whether the karyotypes were different. We examined 58 populations of S. japonica and 14 populations of others species of Salvia. Among the populations of S. japonica represented four forms (f. japonica, f. longipes, f. lanuginosa and f. albiflora. The size of chromosomes were various among Salvia spp. Based on the allozyme as well as the DNA sequence, the populations of S. japonica separated from the others Salvia species. The populations of S. japonica exhibited four combinations of the morphological characters. However, these combinations did not correlate to the four forms of S. japonica. In addition, the morphological variations did not correlate to the allozyme and DNA sequences. It is suggested that the four morphological variations as well as the four form of S. japonica should not considered to be a taxonomic unit; accordingly, S. japonica were considered to be still at the early stage of speciation process.

  5. Testing DNA barcodes in closely related species of Curcuma (Zingiberaceae) from Myanmar and China.

    Science.gov (United States)

    Chen, Juan; Zhao, Jietang; Erickson, David L; Xia, Nianhe; Kress, W John

    2015-03-01

    The genus Curcuma L. is commonly used as spices, medicines, dyes and ornamentals. Owing to its economic significance and lack of clear-cut morphological differences between species, this genus is an ideal case for developing DNA barcodes. In this study, four chloroplast DNA regions (matK, rbcL, trnH-psbA and trnL-F) and one nuclear region (ITS2) were generated for 44 Curcuma species and five species from closely related genera, represented by 96 samples. PCR amplification success rate, intra- and inter-specific genetic distance variation and the correct identification percentage were taken into account to assess candidate barcode regions. PCR and sequence success rate were high in matK (89.7%), rbcL (100%), trnH-psbA (100%), trnL-F (95.7%) and ITS2 (82.6%) regions. The results further showed that four candidate chloroplast barcoding regions (matK, rbcL, trnH-psbA and trnL-F) yield no barcode gaps, indicating that the genus Curcuma represents a challenging group for DNA barcoding. The ITS2 region presented large interspecific variation and provided the highest correct identification rates (46.7%) based on BLASTClust method among the five regions. However, the ITS2 only provided 7.9% based on NJ tree method. An increase in discriminatory power needs the development of more variable markers. PMID:25158042

  6. Description and evaluation of the Model for Ozone and Related chemical Tracers, version 4 (MOZART-4

    Directory of Open Access Journals (Sweden)

    L. K. Emmons

    2010-01-01

    Full Text Available The Model for Ozone and Related chemical Tracers, version 4 (MOZART-4 is an offline global chemical transport model particularly suited for studies of the troposphere. The updates of the model from its previous version MOZART-2 are described, including an expansion of the chemical mechanism to include more detailed hydrocarbon chemistry and bulk aerosols. Online calculations of a number of processes, such as dry deposition, emissions of isoprene and monoterpenes and photolysis frequencies, are now included. Results from an eight-year simulation (2000–2007 are presented and evaluated. The MOZART-4 source code and standard input files are available for download from the NCAR Community Data Portal (http://cdp.ucar.edu.

  7. Cutaneous signs of systemic toxicity due to dioxins and related chemicals

    Energy Technology Data Exchange (ETDEWEB)

    Dunagin, W.G.

    1984-04-01

    The controversy about dioxin effects on human health received a great deal of attention recently when the State of Missouri was declared to have a dioxin crisis. However, dioxin and several related chemicals are widespread throughout the world. Cutaneous signs play an important part in evaluating toxicity of dioxin and similar chemicals. Chloracne is the most sensitive indicator of significant dioxin exposure. Porphyria cutanea tarda and hyperpigmentation are other known cutaneous effects, and malignant fibrous histiocytomas of the skin may possibly be associated, although data are inconclusive on this point. The AMC Council on Scientific Affairs recommended that all physicians become familiar with chloracne and other toxic effects of dioxin. Dermatologists, especially, should be aware of the problem and may discover early cases of previously unsuspected exposure to this group of chemicals.

  8. Surveillance study of vector species on board passenger ships, Risk factors related to infestations

    Directory of Open Access Journals (Sweden)

    Hatzoglou Chrissi

    2008-03-01

    Full Text Available Abstract Background Passenger ships provide conditions suitable for the survival and growth of pest populations. Arthropods and rodents can gain access directly from the ships' open spaces, can be carried in shiploads, or can be found on humans or animals as ectoparasites. Vectors on board ships may contaminate stored foods, transmit illness on board, or, introduce diseases in new areas. Pest species, ship areas facilitating infestations, and different risk factors related to infestations were identified in 21 ferries. Methods 486 traps for insects and rodents were placed in 21 ferries. Archives of Public Health Authorities were reviewed to identify complaints regarding the presence of pest species on board ferries from 1994 to 2004. A detail questionnaire was used to collect data on ship characteristics and pest control practices. Results Eighteen ferries were infested with flies (85.7%, 11 with cockroaches (52.3%, three with bedbugs, and one with fleas. Other species had been found on board were ants, spiders, butterflies, beetles, and a lizard. A total of 431 Blattella germanica species were captured in 28 (9.96% traps, and 84.2% of them were nymphs. One ship was highly infested. Cockroach infestation was negatively associated with ferries in which Hazard Analysis Critical Control Point system was applied to ensure food safety on board (Relative Risk, RR = 0.23, p = 0.03, and positively associated with ferries in which cockroaches were observed by crew (RR = 4.09, p = 0.007, no cockroach monitoring log was kept (RR = 5.00, p = 0.02, and pesticide sprays for domestic use were applied by crew (RR = 4.00, p = 0.05. Cockroach infested ships had higher age (p = 0.03. Neither rats nor mice were found on any ship, but three ferries had been infested with a rodent in the past. Conclusion Integrated pest control programs should include continuing monitoring for a variety of pest species in different ship locations; pest control measures should be more

  9. Stress in the neighborhood: Tissue glucocorticoids relative to stream quality for five species of fish.

    Science.gov (United States)

    King, Gregory D; Chapman, Jacqueline M; Cooke, Steven J; Suski, Cory D

    2016-03-15

    Anthropogenic alterations to terrestrial habitat (e.g., urbanization, deforestation, agriculture) can have a variety of negative effects on watercourses that flow through disturbed landscapes. Currently, the relationship between stream habitat quality and fish condition remains poorly understood. The use of physiological metrics such as glucocorticoids (GCs) provides a useful tool for quantifying these effects by relating the health of resident fishes to stream quality. To date, however, most studies that measure GC levels tend to focus on a single, large-bodied species, rather than evaluating how GCs may be influenced differently between species in a community. In this study, we measured cortisol, the glucocorticoid found in fishes, from fish tissues to quantify effects of habitat degradation on the glucocorticoid function of five species of juvenile and small-bodied stream fish which differ ecologically and phylogenetically. Largemouth bass Micropterus salmoides, brown bullhead Ameiurus nebulosus, white sucker Catostomus commersonii, pumpkinseed Lepomis gibbosus, and logperch Percina caprodes were sampled from a reference and a degraded stream. Upon capture, fish were either euthanized immediately, to quantify baseline stress parameters, or following a standardized stressor, to quantify GC responsiveness. As a result of stream degradation largemouth bass possessed altered baseline GC concentrations and brown bullhead and logperch had altered GC responses to a stressor. White sucker and pumpkinseed did not demonstrate any alteration in baseline or post-stress GC concentrations. Together, our results show that different species residing in identical habitats can demonstrate a variety of responses to environmental stress, highlighting the variation in physiological ability to cope under poor environmental conditions, as well as the difficulty of predicting GC dynamics in wild animals. Understanding the relationships between GC function, habitat quality, and

  10. Microbial environment affects innate immunity in two closely related earthworm species Eisenia andrei and Eisenia fetida.

    Directory of Open Access Journals (Sweden)

    Jiří Dvořák

    Full Text Available Survival of earthworms in the environment depends on their ability to recognize and eliminate potential pathogens. This work is aimed to compare the innate defense mechanisms of two closely related earthworm species, Eisenia andrei and Eisenia fetida, that inhabit substantially different ecological niches. While E. andrei lives in a compost and manure, E. fetida can be found in the litter layer in forests. Therefore, the influence of environment-specific microbiota on the immune response of both species was followed. Firstly, a reliable method to discern between E. andrei and E. fetida based on species-specific primers for cytochrome c oxidase I (COI and stringent PCR conditions was developed. Secondly, to analyze the immunological profile in both earthworm species, the activity and expression of lysozyme, pattern recognition protein CCF, and antimicrobial proteins with hemolytic function, fetidin and lysenins, have been assessed. Whereas, CCF and lysozyme showed only slight differences in the expression and activity, fetidin/lysenins expression as well as the hemolytic activity was considerably higher in E. andrei as compared to E. fetida. The expression of fetidin/lysenins in E. fetida was not affected upon the challenge with compost microbiota, suggesting more substantial changes in the regulation of the gene expression. Genomic DNA analyses revealed significantly higher level of fetidin/lysenins (determined using universal primer pairs in E. andrei compared to E. fetida. It can be hypothesized that E. andrei colonizing compost as a new habitat acquired an evolutionary selection advantage resulting in a higher expression of antimicrobial proteins.

  11. Modeling of photolysis rates over Europe: impact on chemical gaseous species and aerosols

    Directory of Open Access Journals (Sweden)

    E. Real

    2010-07-01

    Full Text Available This paper evaluates the impact of photolysis rate calculation on European air composition and air quality monitoring. In particular, the impact of cloud parametrisation and the impact of aerosols on photolysis rates are analysed. Photolysis rates are simulated using the Fast-JX photolysis scheme and gas and aerosol concentrations over Europe are simulated with the regional model Polair3D of the Polyphemus platform. The photolysis scheme is first use to update the clear sky tabulation used in the previous Polair3D version. Important differences in photolysis rates are simulated, mainly due to updated cross-sections in the Fast-JX scheme. In the previous Polair3D version, clouds were taken into account by multiplying the clear-sky photolysis rates using a correction factor. In a second stage, the impact of clouds is taken into account more accurately by simulating them directly in the photolysis scheme. Differences in photolysis rates inside clouds are as high as differences between simulations with and without clouds. Outside clouds, the differences are small. The largest difference in gas concentrations is simulated for OH with a mean increase of its tropospheric burden of 4 to 5%.

    To take into account the impact of aerosols on photolysis rates, Polair3D and Fast-JX are coupled. Photolysis rates are updated every hour. Large impact on photolysis rates is observed at the ground, decreasing with altitude. The aerosol species that impact the most photolysis rates is dust especially in South Europe. Strong impact is also observed over anthropogenic emission regions (Paris, The Po and the Ruhr Valley where mainly nitrate and sulphate reduced the incoming radiation. Differences in photolysis rates lead to changes in gas concentrations, with the largest impact simulated for OH and NO concentrations. At the ground, monthly mean concentrations of both species are reduced over Europe by around 10 to 14% and their tropospheric burden by around 10

  12. Harmonisation of standards related to limiting chemical risk associated with work processes.

    Science.gov (United States)

    Bostan, Ionel

    2013-01-01

    The presented paper tackles the issue of risk factors specific to work processes that involve the presence of chemicals. The reason that supports the present approach is the fact that the risks most likely to affect health in the workplace have been lately associated with the exposure of workers engaged in industrial activities to aggressive chemical agents. In order to tackle this problem, we shall resort to the normative regulations that have been adjusted upon Romania's inclusion in the European Union. The harmonization and alignment of the national standards--applied to the work systems that make use of various chemical substances likely to affect the health of the human resource--to the European guidelines and regulations has brought about a significant improvement in workplace security practices. Consequently, the arguments and demonstrations in the presented study are based on elements of the European acquis and the Romanian regulations which are all related to the chemical risk factors generated by harmful chemicals, or the potentially accident-prone properties of the substances used in work processes. PMID:24069850

  13. Gustatory sensitivity and food acceptance in two phylogenetically closely related papilionid species: Papilio hospiton and Papilio machaon.

    Directory of Open Access Journals (Sweden)

    Giorgia Sollai

    Full Text Available In herbivorous insects, food selection depends on sensitivity to specific chemical stimuli from host-plants as well as to secondary metabolites (bitter and to sugars (phagostimulatory. Bitter compounds are noxious, unpalatable or both and evoke an aversive feeding response. Instead, sugars and sugar alcohols play a critical role in determining and enhancing the palatability of foods. We assumed that peripheral taste sensitivity may be related to the width of the host selection. Our model consists of two closely phylogenetically related Papilionid species exhibiting a difference in host plant choice: Papilio hospiton and Papilio machaon. The spike activity of the lateral and medial maxillary styloconic taste sensilla was recorded following stimulation with several carbohydrates, nicotine and NaCl, with the aim of characterizing their gustatory receptor neurons and of comparing their response patterns in the light of their different acceptability in feeding behaviour. The results show that: a each sensillum houses phagostimulant and phagodeterrent cells; b the spike activity of the gustatory neurons in response to different taste stimuli is higher in P. hospiton than in P. machaon; c sugar solutions inhibit the spike activity of the deterrent and salt cells, and the suppression is higher in P. machaon than in P. hospiton. In conclusion, we propose that the different balance between the phagostimulant and phagodeterrent inputs from GRNs of maxillary sensilla may contribute in determining the difference in food choice and host range.

  14. The relations between Cs-137, unsupported Pb-210 and chemical properties in forest soil

    International Nuclear Information System (INIS)

    In order to research the relations between the activities of radionuclides and soil chemical properties, we measured Cs-137, unsupported Pb-210 activities and some soil chemical properties, and compared. The study site, Otyouzu basin, is mainly covered with Hinoki (Japanese cypress) stands. The 16 samples was sampled at 10m intervals with a core sampler. The concentration of Cs-137, unsupported Pb-210 in soils, and other chemical properties of soil are measured and compared each other. As chemical properties of soil, ECEC, Carbon contents (C), Fed, Feo, Fet, clay contents (clay), pH(H2O), P-t, P-org, P-ava were measured. And, from these datum, Feo/Fed, (Fed-Feo)/Fet, P-ava/P-t, C/P-org were calculated. The Correlation Coefficients (C.C.) between both radionuclide and carbon contents is relatively high. Although there were no correlations between contents of each from of phosphorus, C.C. between both radionuclide activities and C/P-org, P-ava/P-t were relatively high. It may be dew to the uneven distributions of some elements or nutrients in forest soil. So it may suggest that the concentration of Cs-137 and unsupported Pb-210 cannot be used as the indices that directly indicate the contents of some elements or nutrients except carbon contents. However, the concentration of two radionuclides may be used as indirect indices such as P-ava/P-t, C/P-org, (Fed-Feo)/Fet. These indices can give the information about chemical reactions occur in soils. (author)

  15. Chemical Composition, Larvicidal and Cytotoxic Activities of the Essential Oils from two Bauhinia Species

    Directory of Open Access Journals (Sweden)

    Leôncio M. de Sousa

    2015-10-01

    Full Text Available The essential oils obtained by hydrodistilation from leaves of Bauhinia pulchella Benth. and Bauhinia ungulata L. were analysed by GC-FID and GC-MS. The major components of B. pulchella essential oil were identified as a -pinene (23.9%, caryophyllene oxide (22.4% and b -pinene (12.2%, while in the B. ungulata essential oil were caryophyllene oxide (23.0%, (E-caryophyllene (14.5% and a -copaene (7.2%. The essential oils were subsequently evaluated for their larvicidal and cytotoxic activities. Larval bioassay against Aedes aegypti of B. pulchella and B. ungulata essential oils showed LC 50 values of 105.9 ± 1.5 and 75.1 ± 2.8 m g/mL, respectively. The essential oils were evaluated against four human cancer cells lines: HL-60 (pro-myelocytic leukemia, MCF-7 (breast adenocarcinoma, NCI-H292 (lung carcinoma and HEP-2 ( cervical adenocarcinoma, showing IC 50 values in the range of 9.9 to 53.1 m g/mL. This is the first report on chemical composition of essential from leaves of B. pulchella and on larvicidal and cytotoxic activities of the essential oils.

  16. Chemical composition and antimicrobial activity of the essential oils from four Ruta species growing in Algeria.

    Science.gov (United States)

    Haddouchi, Farah; Chaouche, Tarik Mohammed; Zaouali, Yosr; Ksouri, Riadh; Attou, Amina; Benmansour, Abdelhafid

    2013-11-01

    Antimicrobial properties of plants essential oils have been investigated in order to suggest them as potential tools to overcome the microbial drug resistance and the increasing incidence of food borne diseases problems. The aim of this research is to study the antibacterial and antifungal effects of four traditional plants essential oils, Ruta angustifolia, Ruta chalepensis, Ruta graveolens and Ruta tuberculata, against standard bacterial and fungal strains. The chemical compounds of the oils were examined by GC/MS. Results revealed a powerful antifungal activity against filamentous fungi. Aspergillus fumigatus and Cladosporium herbarum are the most sensitive strains to these oils with MIC values less than 3.5 μg ml(-1) for certain oils, reaching 7.8 μg ml(-1) for other. GC/MS essay exhibited ketones as the most abundant constituent of these oils except for R. tuberculata essential oil which has a completely different composition, monoterpenes alcohols being the most abundant. These compositions explain their potential antifungal activity. PMID:23768355

  17. [Studying the influence of some reactive oxygen species on physical and chemical parameters of blood].

    Science.gov (United States)

    Martusevich, A K; Martusevich, A A; Solov'eva, A G; Peretyagin, S P

    2014-01-01

    The aim of this work was to estimate the dynamics of blood physical and chemical parameters when blood specimens were processed by singlet oxygen in vitro. Our experiments were executed with whole blood specimens of healthy people (n=10). Each specimen was divided into five separate portions of 5 ml. The first portion was a control (without any exposures). The second one was processed by an oxygen-ozone mixture (at ozone concentration of 500 mcg/l, the third portion--by oxygen, and the fourth and fifth ones were processed by a gas mixture with singlet oxygen (50 and 100% of generator power). In blood samples after processing we studied the activity of lactate dehydrogenase, aldehyde dehydrogenase and superoxide dismutase, erythrocyte and plasma levels of glucose and lactate, acid-base balance and the partial pressure of gases in blood. It was found out, that blood processing by singlet oxygen leads to optimization of energy, detoxication and antioxidant enzymes functioning with changes in plasma and erythrocyte level of glucose and lactate, normalization of blood gases level and acid-base balance. Our results show, that the effect of singlet oxygen on enzyme activity is more pronounced than exposure to an oxygen-ozone gas mixture. PMID:25702489

  18. Chemical Composition and Biological Activities of the Essential Oils from Three Melaleuca Species Grown in Tunisia

    Directory of Open Access Journals (Sweden)

    Ismail Amri

    2012-12-01

    Full Text Available The chemical composition of the essential oils of Melaleuca armillaris Sm., Melaleuca styphelioides Sm. and Melaleuca acuminata F. Muell., collected in Tunisia, was studied by means of GC and GC-MS analysis. In all, 46 compounds were identified, 38 for M. armillaris, 20 for M. acuminata and eight for M. styphelioides, respectively. The presence of a sesquiterpenic fraction (52.2% characterized the oil from M. armillaris; M. sthypheliodes oil was rich in methyl eugenol, a phenolic compound (91.1%, while M. acuminata oil is mainly constituted by oxygenated monoterpenoids (95.6%. The essential oils were evaluated for their in vitro potentially phytotoxic activity against germination and initial radicle growth of Raphanus sativus L., Lepidium sativum L., Sinapis arvensis L., Triticum durum L. and Phalaris canariensis L. seeds. The radicle elongation of five seeds was inhibited at the highest doses tested, while germination of all seeds was not affected. Moreover, the essential oils showed low antimicrobial activity against eight selected microorganisms.

  19. CHEMICAL, PHYSICAL AND SENSORY ANALYSIS OF ACTIVITY DIFFERENT YEAST SPECIES ON IDENTICAL SUBSTRATE IN WINE PRODUCTION

    Directory of Open Access Journals (Sweden)

    Vladimír Vietoris

    2013-02-01

    Full Text Available Rizling vlašský is the second most important variety in Slovakia. The science of wine production includes a summary of knowledge and experience in the field of grape growing and wine making, or the production of different types of wines using specific methods of production. Wine quality is the result of the interaction between yeast, bacteria and microscopic funguses. In this research, we studied the effects of active dry wine yeasts on chemical, physical and sensory parameters in wine production. We have applied five kinds of yeasts (FERMIVIN, FERMIVIN PDV, FERMICRU AR2, FERMIFLOR and FERMICRU VB1. It can be concluded that the application of active dry wine yeasts is beneficial for the production of rizling vlašský. The best showing were yeasts FERMIFLOR and FERMIVIN PDM. In the last sample where they were left the original yeasts the varietal aroma was preserved. It can be noted that the wine was right technologically produced and all wines were harmonious with a pleasant fresh taste.

  20. Federal agencies active in chemical industry-related research and development

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1995-09-29

    The Energy Policy Act of 1992 calls for a program to further the commercialization of renewable energy and energy efficient technologies for the industrial sector.. The primary objective of the Office of Industrial Technologies Chemical Industry Team is to work in partnership with the US chemical industry to maximize economic, energy, and environmental benefits through research and development of innovative technologies. This document was developed to inventory organizations within the federal government on current chemical industry-related research and development. While an amount of funding or number of projects specifically relating to chemical industry research and development was not defined in all organizations, identified were about 60 distinct organizations representing 7 cabinet-level departments and 4 independent agencies, with research efforts exceeding $3.5 billion in fiscal year 1995. Effort were found to range from less than $500 thousand per year at the Departments of Agriculture and the Interior to over $100 million per year at the Departments of Commerce, Defense, Energy, and Health and Human Services and the National Aeronautics and Space Administration. The total number of projects in these programs exceeded 10,000. This document is complete to the extent that agencies volunteered information. Additions, corrections, and changes are encouraged and will be incorporated in future revisions.

  1. Comparative study of the chemical composition of essential oils of five Tagetes species collected in Venezuela.

    Science.gov (United States)

    Armas, Kaylin; Rojas, Janne; Rojas, Luis; Morales, Antonio

    2012-09-01

    The leaves and inflorescences of five species of Tagetes, family Asteraceae, were collected from different locations in Mérida state, Venezuela, and their essential oils analyzed by GC and GC/MS. Several differences were observed in the composition of these oils, mainly regarding the major components, which for T. caracasana were trans-ocimenone (64.3%) and cis-tagetone (13.7%), and for T. erecta, piperitone (35.9%) and terpinolene (22.2%). High amounts of trans-anethole (87.5%) and estragole (10.7%) were observed in T. filifolia, while T. subulata essential oil contained terpinolene (26.0%), piperitenone (13.1%) and limonene (10.8%). For T. patula, two different oil samples were analyzed, leaves (TPL) and inflorescences (TPI). The TPL oil showed terpinolene (20.9%) and piperitenone (14.0%) as main components, while the TPI sample was composed mainly of beta-caryophyllene (23.7%), terpinolene (15.6%) and cis-beta-ocimene (15.5%). PMID:23074915

  2. Chemical and biological evaluation of the essential oils of different Melaleuca species.

    Science.gov (United States)

    Farag, R S; Shalaby, A S; El-Baroty, G A; Ibrahim, N A; Ali, M A; Hassan, E M

    2004-01-01

    The essential oils of the fresh leaves of M. ericifolia, M. leucadendron, M. armillaris and M. styphelioides were isolated by a hydrodistillation method and analysed by a gas chromatography/mass spectrometry (GC/MS) technique. The essential oil of M. ericifolia contained methyl eugenol (96.84%) as a major constituent, whereas M. leucadendron was rich in 1,8-cineole (64.30%). The essential oil of M. armillaris was rich in 1,8-cineole (33.93%) followed by terpinen-4-ol (18.79%), whereas M. styphelioides was rich in caryophyllene oxide (43.78%) and (-) spathulenol (9.65%). The essential oils of these species possessed antimicrobial and antifungal activities. M. ericifolia exhibited the highest inhibitory effects against Bacillus subtiles and Aspergillus niger. The antiviral activities of the essential oils against Herpes simplex virus type 1 (HSV-1) were studied in African green monkey kidney cells (Vero) by a plaque reduction assay. The volatile oil of M. armillaris was more effective as a virucidal (up to 99%) than that of M. leucadendron (92%) and M. ericifolia (91.5%). The effects of the essential oils on the antioxidant system status in carbon tetrachloride treated animals were studied. The essential oil of M. armillaris exhibited a marked antioxidant effect, it improved vitamin E, vitamin C and superoxide dismutase parameters so it can be used as a free radical suppressor. PMID:14750197

  3. Chemical Profile, Antioxidant and Antibacterial Activities of Achillea moschata Wulfen, an Endemic Species from the Alps

    Directory of Open Access Journals (Sweden)

    Sara Vitalini

    2016-06-01

    Full Text Available Aerial parts of Achillea moschata Wulfen (Asteraceae growing wild in the Italian Rhaetian Alps were investigated to describe, for the first time, their phenolic content, as well as to characterize the essential oil. Inspection of the metabolic profile combining HPLC-DAD and ESI-MS/MS data showed that the methanol extract contained glycosylated flavonoids with luteolin and apigenin as the main aglycones. Among them, the major compound was 7-O-glucosyl apigenin. Caffeoyl derivates were other phenolics identified. The essential oil obtained by steam distillation and investigated by GC/FID and GC/MS showed camphor, 1,8-cineole, and bornylacetate as the main constituents. The antioxidant capacity of three different extracts with increasing polarity and of the essential oil was evaluated by employing ABTS·+ and DPPH· radical scavenging assays. The methanolic extract was the only significantly effective sample against both synthetic radicals. All samples were also tested against Gram-positive (Bacillus cereus, Enterococcus faecalis, Staphylococcus aureus and Gram-negative (Escherichia coli, Proteus mirabilis, Pseudomonas aeruginosa bacterial species using the disk diffusion assay. The non-polar extracts (dichloromethane and petroleum ether and the essential oil possessed a broad spectrum of antimicrobial activity expressed according to inhibition zone diameter (8–24 mm.

  4. Chemical Profile, Antioxidant and Antibacterial Activities of Achillea moschata Wulfen, an Endemic Species from the Alps.

    Science.gov (United States)

    Vitalini, Sara; Madeo, Moira; Tava, Aldo; Iriti, Marcello; Vallone, Lisa; Avato, Pinarosa; Cocuzza, Clementina Elvezia; Simonetti, Paolo; Argentieri, Maria Pia

    2016-01-01

    Aerial parts of Achillea moschata Wulfen (Asteraceae) growing wild in the Italian Rhaetian Alps were investigated to describe, for the first time, their phenolic content, as well as to characterize the essential oil. Inspection of the metabolic profile combining HPLC-DAD and ESI-MS/MS data showed that the methanol extract contained glycosylated flavonoids with luteolin and apigenin as the main aglycones. Among them, the major compound was 7-O-glucosyl apigenin. Caffeoyl derivates were other phenolics identified. The essential oil obtained by steam distillation and investigated by GC/FID and GC/MS showed camphor, 1,8-cineole, and bornylacetate as the main constituents. The antioxidant capacity of three different extracts with increasing polarity and of the essential oil was evaluated by employing ABTS·+ and DPPH· radical scavenging assays. The methanolic extract was the only significantly effective sample against both synthetic radicals. All samples were also tested against Gram-positive (Bacillus cereus, Enterococcus faecalis, Staphylococcus aureus) and Gram-negative (Escherichia coli, Proteus mirabilis, Pseudomonas aeruginosa) bacterial species using the disk diffusion assay. The non-polar extracts (dichloromethane and petroleum ether) and the essential oil possessed a broad spectrum of antimicrobial activity expressed according to inhibition zone diameter (8-24 mm). PMID:27347915

  5. Rhipicephalus sanguineus and R. turanicus (Acari:Ixodidae): closely related species with different biological characteristics.

    Science.gov (United States)

    Ioffe-Uspensky, I; Mumcuoglu, K Y; Uspensky, I; Galun, R

    1997-01-01

    Life cycle parameters of 2 closely related tick species, Rhipicephalus sanguineus Latreille and R. turanicus Pomerantsev, were studied under laboratory conditions. Both Rhipicephalus, which have small adults, demonstrated the same adaptations as large tick species inhabiting deserts and semideserts: high reproductive rate, decrease in egg size, and an increase in interstage growth to compensate for the smaller size at birth. Pronounced quantitative differences between both species were discerned in relation to these adaptations. Female R. turanicus produced twice as many eggs as R. sanguineus which was facilitated by the greater amount of blood engorged by females and by the smaller egg weight in R. turanicus as compared with R. sanguineus. In all developmental stages, the weight increase from unfed to fed ticks was greater in R. turanicus than in R. sanguineus (23% higher in larvae, 118% in nymphs, and 26% in females). The increase in weight in R. turanicus from the unfed larva (0.013 mg) to the unfed female (3.31 mg) was 254-fold, and in R. sanguineus it was 127-fold (from 0.021 to 2.54 mg). In nymphal R. turanicus, the higher density and the greater height of the dorsal epicuticular folds, as well as procuticular indentations found inside the folds allow this tick to stretch its alloscutum during blood engorgement to a greater extent than R. sanguineus. The rates of blood ingestion (for nymphs and females), egg maturation, and metamorphosis were 1.1-1.7 times greater in R. turanicus than in R. sanguineus. A life cycle strategy with both a higher reproductive rate and faster development in R turanicus may be explained by its greater dependence on environmental factors than that in R. sanguineus. PMID:9086715

  6. Spectral estimation of soil properties in siberian tundra soils and relations with plant species composition

    DEFF Research Database (Denmark)

    Bartholomeus, Harm; Schaepman-Strub, Gabriela; Blok, Daan;

    2012-01-01

    yields a good prediction model for K and a moderate model for pH. Using these models, soil properties are determined for a larger number of samples, and soil properties are related to plant species composition. This analysis shows that variation of soil properties is large within vegetation classes, but......Predicted global warming will be most pronounced in the Arctic and will severely affect permafrost environments. Due to its large spatial extent and large stocks of soil organic carbon, changes to organic matter decomposition rates and associated carbon fluxes in Arctic permafrost soils will...... significantly impact the global carbon cycle. We explore the potential of soil spectroscopy to estimate soil carbon properties and investigate the relation between soil properties and vegetation composition. Soil samples are collected in Siberia, and vegetation descriptions are made at each sample point. First...

  7. Protection of neuronal cells against reactive oxygen species by carnosine and related compounds.

    Science.gov (United States)

    Boldyrev, Alexander; Bulygina, Elena; Leinsoo, Toomas; Petrushanko, Irina; Tsubone, Shiori; Abe, Hiroki

    2004-01-01

    Carnosine and related compounds were compared in terms of their abilities to decrease the levels of reactive oxygen species (ROS) in suspensions of isolated neurons activated by N-methyl-D-aspartic acid (NMDA) using both stationary fluorescence measurements and flow cytometry. Carnosine was found to suppress the fluorescent signal induced by ROS production and decreased the proportion of highly fluorescent neurons, while histidine showed opposite effects. N-Acetylated derivatives of both carnosine and histidine demonstrated weak (statistically indistinguishable) suppressive effects on the ROS signal. N-Methylated derivatives of carnosine suppressed intracellular ROS generation to the same extent as carnosine. This rank of effectiveness is distinct from that previously obtained for the anti-radical ability of CRCs (anserine>carnosine>ophidine). These differences suggest that the similar ability of carnosine and its N-methylated derivatives to protect neuronal cells against the excitotoxic effect of NMDA is not solely related to the antioxidant properties of these compounds. PMID:14698913

  8. The complete mitochondrial genome of Oxyuris equi: Comparison with other closely related species and phylogenetic implications.

    Science.gov (United States)

    Zhang, Yan; Xu, Wen-Wen; Guo, Dong-Hui; Liu, Ze-Xuan; Duan, Hong; Su, Xin; Fu, Xue; Yue, Dong-Mei; Gao, Yuan; Wang, Chun-Ren

    2015-12-01

    The equine pinworm Oxyuris equi (Nematoda: Oxyuridomorpha) is the most common horse nematode, has a worldwide distribution, and causes major economic losses. In the present study, the complete O. equi mitochondrial (mt) genome was sequenced, and the mt genome structure and organization were compared with those of other closely related pinworm species, Enterobius vermicularis and Wellcomia siamensis. The O. equi mt genome is a 13,641-bp circular DNA molecule that encodes 36 genes (12 protein-coding genes, 22 tRNAs, and two rRNAs) and one non-coding region, which is slightly shorter than that of E. vermicularis and W. siamensis. The O. equi mt gene arrangement was consistent with that of GA13-type E. vermicularis but it differs from GA12-type W. siamensis. Phylogenetic analyses using concatenated amino acid sequences of the 12 protein-coding genes with three different computational algorithms (maximum parsimony, maximum likelihood, and Bayesian inference) revealed that there were two distinct clades in Chromadorea nematodes that reflected infraorder. Spiruromorpha formed one clade, whereas Rhabditomorpha, Ascaridomorpha, and Oxyuridomorpha formed another clade. O. equi, E. vermicularis, and W. siamensis represent distinct but closely related species, which indicated that Oxyuridomorpha is paraphyletic. Sequencing the O. equi mt genome provides novel genetic markers for studying the molecular epidemiology and population genetics of pinworms. PMID:26452611

  9. Influence of chemical form, feeding regimen, and animal species on the gastrointestinal absorption of plutonium

    International Nuclear Information System (INIS)

    We evaluated the effect of chemical form and feeding regimen on the gastrointestinal (GI) absorption of plutonium in adult mice at plutonium concentrations relevant to the establishment of drinking water standards. Mean fractional GI absorption values in fasted adult mice were: Pu(VI) bicarbonate, 15 x 10-4; Pu(IV) bicarbonate, 20 x 10-4; Pu(IV) nitrate (pH2), 17 x 10-4; Pu(IV) citrate, 24 x 10-4; and Pu(IV) polymer, 3 x 10-4. Values in fed adult mice were: Pu(VI) bicarbonate, 1.4 x 10-4; Pu(IV) polymer, 0.3 x 10-4. Pu(VI) is the oxidation state in chlorinated drinking waters and Pu(IV) is the oxidation state in many untreated natural waters. To assess the validity of extrapolating data from mice to humans, we also determined the GI absorption of Pu(VI) bicarbonate in adult baboons with a dual-isotope method that does not require animal sacrifice. Fractional GI absorption values obtained by this method were 23 +- 10 x 10-4 for fasted baboons (n=5) and 1.4 +- 0.9 x 10-4 for fed baboons (n=3). We have so far validated this method in one baboon and are currently completing validation in two additional animals. At low plutonium concentrations, plutonium oxidation state [Pu(VI) vs Pu(IV)] and administration medium (bicarbonate vs nitrate vs citrate) had little effect on the GI absorption of plutonium in mice. Formation of Pu(IV) polymers and animal feeding decreased the GI absorption of plutonium 5- to 10-fold. The GI absorption of Pu(VI) bicarbonate in both fed and fasted adult baboons appeared to be the same as in fed and fasted adult mice, respectively. 17 refs., 2 tabs

  10. PACSY, a relational database management system for protein structure and chemical shift analysis

    International Nuclear Information System (INIS)

    PACSY (Protein structure And Chemical Shift NMR spectroscopY) is a relational database management system that integrates information from the Protein Data Bank, the Biological Magnetic Resonance Data Bank, and the Structural Classification of Proteins database. PACSY provides three-dimensional coordinates and chemical shifts of atoms along with derived information such as torsion angles, solvent accessible surface areas, and hydrophobicity scales. PACSY consists of six relational table types linked to one another for coherence by key identification numbers. Database queries are enabled by advanced search functions supported by an RDBMS server such as MySQL or PostgreSQL. PACSY enables users to search for combinations of information from different database sources in support of their research. Two software packages, PACSY Maker for database creation and PACSY Analyzer for database analysis, are available from http://pacsy.nmrfam.wisc.eduhttp://pacsy.nmrfam.wisc.edu.

  11. Species richness and relative abundance of birds in natural and anthropogenic fragments of Brazilian Atlantic forest

    Directory of Open Access Journals (Sweden)

    Luiz dos Anjos

    2004-06-01

    Full Text Available Bird communities were studied in two types of fragmented habitat of Atlantic forest in the State of Paraná, southern Brazil; one consisted of forest fragments that were created as a result of human activities (forest remnants, the other consisted of a set of naturally occurring forest fragments (forest patches. Using quantitative data obtained by the point counts method in 3 forest patches and 3 forest remnants during one year, species richness and relative abundance were compared in those habitats, considering species groups according to their general feeding habits. Insectivores, omnivores, and frugivores presented similar general tendencies in both habitats (decrease of species number with decreasing size and increasing isolation of forest fragment. However, these tendencies were different, when considering the relative abundance data: the trunk insectivores presented the highest value in the smallest patch while the lowest relative abundance was in the smallest remnant. In the naturally fragmented landscape, time permitted that the loss of some species of trunk insectivores be compensated for the increase in abundance of other species. In contrast, the remnants essentially represented newly formed islands that are not yet at equilibrium and where future species losses would make them similar to the patches.Comunidades de aves foram estudadas em duas regiões fragmentadas de floresta Atlântica no Estado do Paraná, sul do Brasil; uma região é constituída de fragmentos florestais que foram criados como resultado de atividades humanas (remanescentes florestais e a outra de um conjunto de fragmentos florestais naturais (manchas de floresta. Usando dados quantitativos (o método de contagens pontuais previamente obtidos em 3 manchas de floresta e em 3 remanescentes florestais durante um ano, a riqueza e a abundância relativa de aves foram comparadas naqueles habitats considerando as espécies pelos seus hábitos alimentares. Inset

  12. Transcriptome Sequencing of Chemically Induced Aquilaria sinensis to Identify Genes Related to Agarwood Formation

    Science.gov (United States)

    Ye, Wei; Wu, Hongqing; He, Xin; Wang, Lei; Zhang, Weimin; Li, Haohua; Fan, Yunfei; Tan, Guohui; Liu, Taomei; Gao, Xiaoxia

    2016-01-01

    Background Agarwood is a traditional Chinese medicine used as a clinical sedative, carminative, and antiemetic drug. Agarwood is formed in Aquilaria sinensis when A. sinensis trees are threatened by external physical, chemical injury or endophytic fungal irritation. However, the mechanism of agarwood formation via chemical induction remains unclear. In this study, we characterized the transcriptome of different parts of a chemically induced A. sinensis trunk sample with agarwood. The Illumina sequencing platform was used to identify the genes involved in agarwood formation. Methodology/Principal Findings A five-year-old Aquilaria sinensis treated by formic acid was selected. The white wood part (B1 sample), the transition part between agarwood and white wood (W2 sample), the agarwood part (J3 sample), and the rotten wood part (F5 sample) were collected for transcriptome sequencing. Accordingly, 54,685,634 clean reads, which were assembled into 83,467 unigenes, were obtained with a Q20 value of 97.5%. A total of 50,565 unigenes were annotated using the Nr, Nt, SWISS-PROT, KEGG, COG, and GO databases. In particular, 171,331,352 unigenes were annotated by various pathways, including the sesquiterpenoid (ko00909) and plant–pathogen interaction (ko03040) pathways. These pathways were related to sesquiterpenoid biosynthesis and defensive responses to chemical stimulation. Conclusions/Significance The transcriptome data of the different parts of the chemically induced A. sinensis trunk provide a rich source of materials for discovering and identifying the genes involved in sesquiterpenoid production and in defensive responses to chemical stimulation. This study is the first to use de novo sequencing and transcriptome assembly for different parts of chemically induced A. sinensis. Results demonstrate that the sesquiterpenoid biosynthesis pathway and WRKY transcription factor play important roles in agarwood formation via chemical induction. The comparative analysis of

  13. Evolution of H2O related species in the neutral coma of 67P

    Science.gov (United States)

    Bieler, A. M.; Altwegg, K.; Balsiger, H. R.; Bar-Nun, A.; Berthelier, J. J.; Bochsler, P. A.; Briois, C.; Calmonte, U.; Combi, M. R.; De Keyser, J.; van Dishoeck, E.; Fiethe, B.; Fuselier, S. A.; Gasc, S.; Gombosi, T. I.; Hansen, K. C.; Hässig, M.; Jäckel, A.; Kopp, E.; Korth, A.; Le Roy, L.; Mall, U.; Maggiolo, R.; Marty, B.; Mousis, O.; Owen, T. C.; Reme, H.; Rubin, M.; Sémon, T.; Tzou, C. Y.; Waite, J. H., Jr.; Walsh, C.; Wurz, P.

    2015-12-01

    The ROSINA-DFMS mass spectrometer has been probing the coma of 67Psince the spacecraft arrived at the comet in August 2014.The acquired data set covers a large range of viewing geometries forthe ever changing conditions of 67P along its journey to pericenter. With the high temporal resolutionof ROSINA-DFMS we are able to examine diurnal and seasonal changesof different species in the gaseous coma.Large scale heterogeneities in the coma have been reported since the very first measurements of the neutral inventory at 67P.Many of the minor species are seen to follow one of the major compounds,H2O, CO or CO2.In this paper we will present the latest results on H2O related species.We will discuss the possible trapping/building mechanisms responsible for these species and why it is different from other species such asCO, N2 or CO2. Acknowledgements:Work at the University of Michigan was funded by NASA contract JPL-1266313.Work at UoB was funded by the State of Bern, the Swiss National Science Foundationand the European Space Agency PRODEX Program. Work at MPS was funded by the Max-Planck Society and BMWI contract 50QP1302. Work at Southwest Research institute was supported by subcontract #1496541 from the Jet Propulsion Laboratory. Work at BIRA-IASB was supported by the Belgian Science Policy Office via PRODEX/ROSINA PEA 90020. This work has been carried out thanks to the support of the A*MIDEX project (n° ANR-11-IDEX-0001-02) funded by the « Investissements d'Avenir » French Government program, managed by the French National Research Agency (ANR). This work was supported by CNES grants at IRAP, LATMOS, LPC2E, UTINAM, CRPG, and by the European Research Council (grant no. 267255 to B. Marty). A. Bar-Nun thanks the Ministry of Science and the Israel Space agency. Work by JHW at Southwest Research Institute was funded by the NASA JPL subcontract NAS703001TONMO710889. EvD and CW are supported by A-ERC grant 291141 CHEMPLAN and an NWO Veni award. We acknowledge herewith the

  14. Quantifying the relative molecular orbital alignment for molecular junctions with similar chemical linkage to electrodes

    OpenAIRE

    Baldea, Ioan

    2015-01-01

    Estimating the relative alignment between the frontier molecular orbitals that dominates the charge transport through single-molecule junctions represents a challenge for theory. This requires approaches beyond the widely employed framework provided by the density functional theory, wherein the Kohn-Sham "orbitals" are treated as if they were real molecular orbitals, which is not the case. In this paper, we report results obtained by means of quantum chemical calculations, including the EOM-C...

  15. Predicting work-related flow in the chemical industry / Erika Maree

    OpenAIRE

    Maree, Erika

    2008-01-01

    In a new world of work characterised by competitiveness, benchmarking, technological innovation and efficiency, the South African chemical industry needs to function at an optimal level to meet the demands of its stakeholders and employees. The industry needs leadership of the highest standard and an efficient, productive workforce. The objective of this study was to determine the relationship between leader empowering behaviour, self-efficacy, job resources and work-related flow for empl...

  16. Inter-Division IV/V WG on Chemically Peculiar and Related Stars

    Science.gov (United States)

    Weiss, Werner W.

    2007-03-01

    A meeting of the IAU Working Group on Chemically Peculiar and Related Stars was held in Sydney on July 16th, 2003. The focus of the business session was on possible effects on our WG due to plans for restructuring the IAU. Working Groups are to be evaluated every 3 years and in general, will be limited to a period of 3 or 6 years.

  17. Preliminary Lists of PFOS, PFAS, PFOA and Related Compounds and Chemicals that May Degrade to PFCA

    OpenAIRE

    OECD

    2006-01-01

    The OECD conducted a survey in 2004 on Perfluorooctane Sulfonate (PFOS), Perfluoroalkyl Sulfonate (PFAS), Perfluorooctanoic Acid (PFOA), related substances and products/mixtures containing these substances within OECD and non-OECD member countries. The information sought were quantities manufactured or imported, concentration of the chemicals in the products or mixtures, uses, use in consumer products, availability of alternatives or substitutes and essential uses for which no substitutes are...

  18. Hygroscopic properties of the Paris urban aerosol in relation to its chemical composition

    OpenAIRE

    K. A. Kamilli; L. Poulain; Held, A.; Nowak, A.; Birmili, W.; A. Wiedensohler

    2013-01-01

    Aerosol hygroscopic growth factors and chemical properties were measured as part of the MEGAPOLI "Megacities Plume Case Study" at the urban site LHVP in the city center of Paris from June to August 2009, and from January to February 2010. Descriptive hygroscopic growth factors (DGF) were derived in the diameter range from 25 to 350 nm at relative humidities of 30, 55, 75, and 90% by applying the summation method on humidified and dry aerosol size distributions measured simultaneously w...

  19. Effects of u.v.-B radiation on epicuticular wax production and chemical composition of four Picea species

    International Nuclear Information System (INIS)

    Two-yr-old Norway (Picea abies (L.) Karst.), red (P. rubens Sarg.), black (P. mariana (Mill.) B.S.P.) and white (P. glauca (Moench.) Voss) spruce seedlings were exposed from bud break for 35 or 63 d (4 * 5 h irradiance d−1) to a gradient of biologically effective u.v.-B radiation (λ = 280–315 nm) ranging from 0 * 61 kJ m−2 d−1 to 5 * 99 kJ m−1 d−1. No visible symptoms of u.v.-B injury were observed. Epicuticular wax production was not affected by needle exposure to increasing u.v.-B irradiance. Seven constituent classes were resolved by GC and confirmed by GC–MS in wax recovered from needles of the four species. Wax composition of Norway, black and red spruce was altered following needle exposure to increasing u.v.-B dose. White spruce wax composition was unaffected. Direction and magnitude of wax composition response was species-dependent. The proportion of nonacosane diols on Norway spruce needles increased (P < 0 * 05) whereas that of alkyl esters decreased with increasing u.v.-B dose. The proportion of fatty acids in black spruce needle wax increased (P < 0 * 05), and that of estolides (GC-identified) in red spruce needle wax increased (P < 0 * 05) with increasing u.v.-B dose. Changes in wax chemical composition reported were induced following to daily, 4-h duration exposures of needles to u.v.-B centred on 1200 hours. Affected variables exhibited a continuum of response. The highest dose applied was within the range of measured or predicted increases in mid-northern latitudes. Such changes in conifer needle epicuticular wax chemical composition might result in increased seedling sensitivity to the changing atmospheric environment, especially from co-exposure to tropospheric ozone in mid-northern latitudes where much of Canada’s productive forest is located. (author)

  20. Chemical Diversity and Biological Activity of the Volatiles of Five Artemisia Species from Far East Russia

    Directory of Open Access Journals (Sweden)

    Gulmira Özek

    2014-05-01

    Full Text Available Artemisia argyi , A. feddei, A. gmelinii, A. manshurica, and A. olgensis (Asteraceae were collected in Far East Russia. Oils were hydrodistilled and simultaneously analyzed by GC-FID and GC/MS. Main constituents were found as follows in Artemisia oils: selin-11-en-4 a -ol (18.0%, 1,8-cineole (14.2.0%, artemisia alcohol (12.9%, borneol (9.7% in A. argyi; camphor (31.2%, 1,8-cineole (17.6%, a -thujone (5.7% in A. feddei; longiverbenone (12.0%, isopinocamphone (8.9%, 1,8-cineole (6.7%, camphor (5.8%, trans-p-menth-2-en-1-ol (5.3% in A. gmelinii; germacrene D (11.2%, rosifoliol (10.1%, caryophyllene oxide (6.8%, eudesma-4(15,7-dien-1 b -ol (5.6% in A. manshurica; eudesma-4(15,7-dien-1 b -ol (6.9%, caryophyllene oxide (5.6%, guaia-6,10(14-dien-4 b -ol (5.1% and hexadecanoic acid (5.0% in A. olgensis. Oils were subsequently submitted for antifungal and antimosquito evaluations. Artemisia species oils showed biting deterrent effects in Aedes aegypti and Artemisia gmelinii oil with the most active biting deterrence index values of 0.82 ± 0.1 at 10 m g/mL. Larval bioassay of A. gmelinii and A. olgensis oils showed higher larvicidal activity against Ae. aegypti larvae with LD50 values of 83.8 (72.6 – 95.7 ppm and 91.0 (73.8 – 114.5 ppm, respectively. Antifungal activity was evaluated against the strawberry anthracnose-causing fungal plant pathogens Colletotrichum acutatum, C. fragariae and C. gloeosporioides using direct overlay bioautography assay and all showed non-selective weak antifungal activity. Antioxidant evaluations of the oils were performed by using b -carotene bleaching, Trolox equivalent and DPPH tests. The tested Artemisia oils demonstrated moderate antioxidant activity.

  1. Tissue distribution, gender- and genotype-dependent expression of autophagy-related genes in avian species.

    Directory of Open Access Journals (Sweden)

    Alissa Piekarski

    Full Text Available As a result of the genetic selection of broiler (meat-type breeders chickens for enhanced growth rate and lower feed conversion ratio, it has become necessary to restrict feed intake. When broilers are fed ad libitum, they would become obese and suffer from several health-related problems. A vital adaptation to starvation is autophagy, a self-eating mechanism for recycling cellular constituents. The autophagy pathway has witnessed dramatic growth in the last few years and extensively studied in yeast and mammals however, there is a paucity of information in avian (non-mammalian species. Here we characterized several genes involved in autophagosome initiation and elongation in Red Jungle fowl (Gallus gallus and Japanese quail (coturnix coturnix Japonica. Both complexes are ubiquitously expressed in chicken and quail tissues (liver, leg and breast muscle, brain, gizzard, intestine, heart, lung, kidney, adipose tissue, ovary and testis. Alignment analysis showed high similarity (50.7 to 91.5% between chicken autophagy-related genes and their mammalian orthologs. Phylogenetic analysis demonstrated that the evolutionary relationship between autophagy genes is consistent with the consensus view of vertebrate evolution. Interestingly, the expression of autophagy-related genes is tissue- and gender-dependent. Furthermore, using two experimental male quail lines divergently selected over 40 generations for low (resistant, R or high (sensitive, S stress response, we found that the expression of most studied genes are higher in R compared to S line. Together our results indicate that the autophagy pathway is a key molecular signature exhibited gender specific differences and likely plays an important role in response to stress in avian species.

  2. Relationship between Reproductive Allocation and Relative Abundance among 32 Species of a Tibetan Alpine Meadow: Effects of Fertilization and Grazing

    OpenAIRE

    Niu, Kechang; Schmid, Bernhard; Choler, Philippe; Du, Guozhen

    2012-01-01

    Background: Understanding the relationship between species traits and species abundance is an important goal in ecology and biodiversity science. Although theoretical studies predict that traits related to performance (e.g. reproductive allocation) are most directly linked to species abundance within a community, empirical investigations have rarely been done. It also remains unclear how environmental factors such as grazing or fertilizer application affect the predicted relationship. Met...

  3. Signatures of selection in loci governing major colour patterns in Heliconius butterflies and related species

    Directory of Open Access Journals (Sweden)

    Joron Mathieu

    2010-11-01

    Full Text Available Abstract Background Protein-coding change is one possible genetic mechanism underlying the evolution of adaptive wing colour pattern variation in Heliconius butterflies. Here we determine whether 38 putative genes within two major Heliconius patterning loci, HmYb and HmB, show evidence of positive selection. Ratios of nonsynonymous to synonymous nucleotide changes (ω were used to test for selection, as a means of identifying candidate genes within each locus that control wing pattern. Results Preliminary analyses using 454 transcriptome and Bacterial Artificial Chromosome (BAC sequences from three Heliconius species highlighted a cluster of genes within each region showing relatively higher rates of sequence evolution. Other genes within the region appear to be highly constrained, and no ω estimates exceeded one. Three genes from each locus with the highest average pairwise ω values were amplified from additional Heliconius species and races. Two selected genes, fizzy-like (HmYb and DALR (HmB, were too divergent for amplification across species and were excluded from further analysis. Amongst the remaining genes, HM00021 and Kinesin possessed the highest background ω values within the HmYb and HmB loci, respectively. After accounting for recombination, these two genes both showed evidence of having codons with a signature of selection, although statistical support for this signal was not strong in any case. Conclusions Tests of selection reveal a cluster of candidate genes in each locus, suggesting that weak directional selection may be occurring within a small region of each locus, but coding changes alone are unlikely to explain the full range of wing pattern diversity. These analyses pinpoint many of the same genes believed to be involved in the control of colour patterning in Heliconius that have been identified through other studies implementing different research methods.

  4. Auto-digital gain balancing: a new detection scheme for high-speed chemical species tomography of minor constituents

    International Nuclear Information System (INIS)

    In many dynamic gas-phase reaction processes, there is great interest to measure the distribution of minor constituents, i.e. −3 by volume (1000 ppm). One such case is the after-treatment of automotive gasoline engine exhaust by catalytic conversion, where a characteristic challenge is to image the distribution of 10 ppm (average) of carbon monoxide (CO) at 1000 frames per second across a 50 mm diameter exhaust pipe; this particular problem has been pursued as a case study. In this paper, we present a novel electronic scheme that achieves the required measurement of around 10−3 absorption with 10−4 precision at kHz bandwidth. This was not previously achievable with any known technology. We call the new scheme Auto-Digital Gain Balancing. It is amenable to replication for many simultaneous measurement channels, and it permits simultaneous measurement of multiple species, in some circumstances. Experimental demonstrations are presented in the near-infrared. In single scans of a tunable diode laser, measurements of both CO and CO2 have been made with 20 dB signal-to-noise ratio at peak absorption. This work paves the way for chemical species tomography of minor constituents in many dynamic gas-phase systems

  5. Determination of thephysico-chemical 131I species in the exhausts and stack effluent of a PWR power plant

    International Nuclear Information System (INIS)

    To quantify the credit that can be granted in the assessment of the 131I ingestion doses and the improvement that can be achieved in the ventilation systems if differences of the physico-chemical 131I species with respect to the environmental impact are taken into account, the fractions of the 131I species were determined in the stack effluent and in various exhausts of a 1300 MW/sub e/ PWR power plant during a period of 3 months. Based on these measurements, calculations for different cases of filtration of the main exhausts for iodine were carried out. The average fractions of elemental and organic 131I were about 70 and 30% respectively in the stack effluent during the time indicated. Elem. 131I orginated mainly from the hoods in which samples of the primary coolant are taken and processed. Org. 131I was mainly contributed by the equipment compartments. If the hood exhaust had been filtered, as was the case with the equipment compartment exhaust, the fractions of elem. and org. 131I would have been on the order of 50% each and the calculated 131I ingestion doses would have been a factor of 3 lower

  6. Mercury from combustion sources: a review of the chemical species emitted and their transport in the atmosphere

    International Nuclear Information System (INIS)

    Different species of mercury have different physical/chemical properties and thus behave quite differentially in air pollution control equipment and in the atmosphere. In general, emission of mercury from coal combustion sources are approximately 20-50% elemental mercury (Hg0) and 50-80% divalent mercury (Hg(II)), which may be predominantly HgCl2. Emissions of mercury from waste incinerators are approximately 10-20% Hg0 and 75-85% Hg(II). The partitioning of mercury in flue gas between the elemental and divalent forms may be dependent on the concentration of particulate carbon, HCl and other pollutants in the stack emissions. The emission of mercury from combustion facilities depends on the species in the exhaust stream and the type of air pollution control equipment used at the source. Air pollution control equipment for mercury removal at combustion facilities includes activated carbon injection, sodium sulfide injection and wet lime/limestone flue gas desulfurization. White Hg(II) is water-soluble and may be removed form the atmosphere by wet and dry deposition close to the combustion sources, the combination of a high vapor pressure and low water-solubility facilitate the long-range transport of Hg0 in the atmosphere. Background mercury in the atmosphere is predominantly Hg0. Elemental mercury is eventually removed from the atmosphere by dry deposition onto surfaces and by wet deposition after oxidation to water-soluble, divalent mercury. 62 refs., 2 figs., 1 tab

  7. Relative mutagenic effects of ionizing radiations and alkylating chemicals in rice

    International Nuclear Information System (INIS)

    Studies were undertaken on the relative mutagenic effects of three ionizing radiations (X-rays, gamma rays, fast neutrons) and five alkylating chemicals (DES, EMS, MMS, NMH, MNNG) in rice. Observations on seed germination, seedling survival, seedling height, seed fertility and chlorophyll deficient chimeras were made in the M1 generation. The M2 generation was grown as M1 ear progenies. Chlorophyll mutation frequency, segregation percentage and mutant spectrum were estimated. The mutagenic effectiveness and efficiency were also worked out. Radiations were more effective than chemical mutagens. Mutagenic effectiveness decreased with increase in doses of mutagens. This was due to the failure of mutation frequency to increase proportionately with increase in mutagen doses. Mutagenic efficiency was higher for radiations when estimated on the basis of lethality and injury whereas, based on sterility, chemical mutagens were more efficient. Mutagenic efficiency also decreased with increase in doses of mutagens. The most effective as well as efficient radiation was fast neutrons. Among chemical mutagens the most effective was NMH whereas the most efficient was EMS. (author)

  8. A combination of 3D-QSAR, docking, local-binding energy (LBE) and GRID study of the species differences in the carcinogenicity of benzene derivatives chemicals.

    Science.gov (United States)

    Fratev, Filip; Benfenati, Emilio

    2008-09-01

    A combination of 3D-QSAR, docking, local-binding energy (LBE) and GRID methods was applied as a tool to study and predict the mechanism of action of 100 carcinogenic benzene derivatives. Two 3D-QSAR models were obtained: (i) model of mouse carcinogenicity on the basis of 100 chemicals (model 1) and (ii) model of the differences in mouse and rat carcinogenicity on the basis of 73 compounds (model 2). 3D-QSAR regression maps indicated the important differences in species carcinogenicity, and the molecular positions associated with them. In order to evaluate the role of P450 metabolic process in carcinogenicity, the following approaches were used. The 3D models of CYP2E1 for mouse and rat were built up. A docking study was applied and the important ligand-protein residues interactions and oxidation positions of the molecules were identified. A new approach for quantitative assessment of metabolism pathways was developed, which enabled us to describe the species differences in CYP2E1 metabolism, and how it can be related to differences in the carcinogenic potential for a subset of compounds. The binding energies of the important substituents (local-binding energy-LBE) were calculated, in order to quantitatively demonstrate the contribution of the substituents in metabolic processes. Furthermore, a computational procedure was used for determining energetically favourable binding sites (GRID examination) of the enzymes. The GRID procedure allowed the identification of some important differences, related to species metabolism in CYP2E1. Comparing GRID, 3D-QSAR maps and LBE results, a similarity was identified, indicating a relationship between P450 metabolic processes and the differences in the carcinogenicity. PMID:18495507

  9. SEED PHYSIOLOGY CLASSIFICATION OF LAURACEAE FOREST SPECIES IN RELATION TO THE STORAGE BEHAVIOUR

    Directory of Open Access Journals (Sweden)

    Antonio Cláudio Davide

    2003-01-01

    Full Text Available Knowledge on the storability of seeds allows the establishment of suitable conditions forkeeping viability after harvest and elaboration of programs for the conservation of germoplasmabanks in the long term. This study aimed to classify seeds of Cryptocarya aschersoniana, Nectandranitidula, Ocotea odorifera and Persea pyrifolia in relation to the storage behavior based on theirtolerance to desiccation and low temperatures. Viability and moisture content were accessed forfreshly-processed seeds; for seeds desiccated; after 90 days for fresh seeds and stored at 5 °C packedin semi-permeable package and after 90 days for dry seeds stored at 5 °C and -18 °C with the impermeable wrapping. Statistical analysis was performed by comparing the overlaying confidence Classificação fisiológica de sementes de espécies florestais pertencentes à… 30intervals of the means of germination percentage for each species. The seeds of species studyed wereconsidered recalcitrant because loosed viability after desiccation.

  10. Fruit composition diversity in land races and modern pepino (Solanum muricatum) varieties and wild related species.

    Science.gov (United States)

    Herraiz, Franscisco J; Raigón, María D; Vilanova, Santiago; García-Martínez, María D; Gramazio, Pietro; Plazas, Mariola; Rodríguez-Burruezo, Adrián; Prohens, Jaime

    2016-07-15

    Pepino (Solanum muricatum) fruits from 15 accessions of cultivated pepino as well as six accessions from wild relatives were evaluated for contents in dry matter, protein, β-carotene, chlorophylls and seven minerals. Several-fold differences among accessions were found for most traits. Average values obtained were similar to those of melon and cucumber, but the phenolic contents were much higher. Wild species had significantly higher average contents for all traits vs. the cultivated pepino accessions. And, the comparisons among the cultivated pepino varieties showed that the modern varieties were more uniform in composition, and they possessed significantly lower concentrations of protein, P, K, and Zn than local land races. Most of the significant correlations among composition traits were positive. Our studies show that regular consumption of pepino fruits could make a significant contribution to the recommended daily intake of P, K, Fe and Cu as well as to the average daily intake of phenolics. Furthermore, the higher values for most nutrients measured in the wild species and in the local land races indicate that new pepino varieties with improved fruit contents in nutrient and bioactive compounds can be developed. PMID:26948588

  11. A new species of Tomopterna (Anura: Ranidae from the Kruger National Park, with notes on related species

    Directory of Open Access Journals (Sweden)

    N. I. Passmore

    1975-07-01

    Full Text Available A new species of Tomoptema, T. krugerensis, sp. n., has been recorded from the Kruger National Park, Republic of South Africa.Morphologically it is very similar to T. delalandei cryptotis (Boulenger but the mating call is markedly different from that of the other members of the genus and this is coupled with small but consistent morphological differences.T. krugerensis sp. n. is known to occur only on a portion of the western fringe of the vast sandveld areas of Mozambique, but possibly has a much wider distribution. Mating call, calling behaviour, eggs, early development and defence mechanisms are described. The affinities of the new form are discussed and the mating calls of other members of the genus are reviewed. Mating call is again shown to be a sensitive non-morphological taxonomic tool.

  12. Gene expression responses of HeLa cells to chemical species generated by an atmospheric plasma flow

    International Nuclear Information System (INIS)

    Highlights: • Response of HeLa cells to a plasma-irradiated medium was revealed by DNA microarray. • Gene expression pattern was basically different from that in a H2O2-added medium. • Prominently up-/down-regulated genes were partly shared by the two media. • Gene ontology analysis showed both similar and different responses in the two media. • Candidate genes involved in response to ROS were detected in each medium. - Abstract: Plasma irradiation generates many factors able to affect the cellular condition, and this feature has been studied for its application in the field of medicine. We previously reported that hydrogen peroxide (H2O2) was the major cause of HeLa cell death among the chemical species generated by high level irradiation of a culture medium by atmospheric plasma. To assess the effect of plasma-induced factors on the response of live cells, HeLa cells were exposed to a medium irradiated by a non-lethal plasma flow level, and their gene expression was broadly analyzed by DNA microarray in comparison with that in a corresponding concentration of 51 μM H2O2. As a result, though the cell viability was sufficiently maintained at more than 90% in both cases, the plasma-medium had a greater impact on it than the H2O2-medium. Hierarchical clustering analysis revealed fundamentally different cellular responses between these two media. A larger population of genes was upregulated in the plasma-medium, whereas genes were downregulated in the H2O2-medium. However, a part of the genes that showed prominent differential expression was shared by them, including an immediate early gene ID2. In gene ontology analysis of upregulated genes, the plasma-medium showed more diverse ontologies than the H2O2-medium, whereas ontologies such as “response to stimulus” were common, and several genes corresponded to “response to reactive oxygen species.” Genes of AP-1 proteins, e.g., JUN and FOS, were detected and notably elevated in the plasma-medium. These

  13. Chemical Composition and Bioactivity of Essential Oil of Atalantia guillauminii against Three Species Stored Product Insects.

    Science.gov (United States)

    Yang, Kai; You, Chun-Xue; Wang, Cheng-Fang; Lei, Ning; Guo, Shan-Shan; Geng, Zhu-Feng; Du, Shu-Shan; Ma, Ping; Deng, Zhi-Wei

    2015-01-01

    The toxic and repellent activities of the essential oil extracted from the leaves of Atalantia guillauminii Swingle were evaluated against three stored product insects, red flour beetles (Tribolium castaneum), cigarette beetles (Lasioderma serricorne) and booklice (Liposcelis bostrychophila). The essential oil obtained by hydrodistillation was investigated by GC-MS. The main constituents of the essential oil were β-thujene (27.18%), elemicin (15.03%), eudesma-3, 7(11)-diene (9.64%), followed by (-)-4-terpeniol (6.70%) and spathulenol (5.25%). The crude oil showed remarkable contact toxicity against T. castaneum, L. serricorne adults and L. bostrychophila with LD50 values of 17.11, 24.07 µg/adult and 55.83 µg/cm(2) respectively and it also displayed strong fumigant toxicity against T. castaneum, L. serricorne adults with LC50 values of 17.60 and 12.06 mg/L respectively, while weak fumigant toxicity against L. bostrychophila with a LC50 value of 16.75 mg/L. Moreover, the essential oil also exhibited the same level repellency against the three stored product insects, relative to the positive control, DEET. At the same concentrations, the essential oil was more repellent to T. castaneum than to L. serricorne. Thus, the essential oil of A. guillauminii may be potential to be developed as a new natural fumigant/repellent in the control of stored product insects. PMID:26369599

  14. Application of high resolution Chemical Ionization Mass Spectrometry (CI-ToFMS to study SOA composition: focus on formation of oxygenated species via aqueous phase processing

    Directory of Open Access Journals (Sweden)

    D. Aljawhary

    2013-07-01

    Full Text Available This paper demonstrates the capabilities of Chemical Ionization Mass Spectrometry (CIMS to study secondary organic aerosol (SOA composition with a high resolution (HR time-of-flight mass analyzer (aerosol-CI-ToFMS. In particular, by studying aqueous oxidation of Water Soluble Organic Compounds (WSOC extracted from α-pinene ozonolysis SOA, we assess the capabilities of three common CIMS reagent ions: (a protonated water clusters (H2OnH+, (b acetate CH3C(OO− and (c iodide water clusters I(H2On− to monitor SOA composition. As well, we report the relative sensitivity of these reagent ions to a wide range of common organic aerosol constituents. We find that (H2OnH+ is more selective to the detection of less oxidized species, so that the range of O/C and OSC (carbon oxidation state in the SOA spectra is considerably lower than those measured using CH3C(OO− and I(H2On−. Specifically, (H2OnH+ ionizes organic compounds with OSC ≤ 1.3, whereas CH3C(OO− and I(H2On− both ionize highly oxygenated organics with OSC up to 4 with I(H2On− being more selective towards multi-functional organic compounds. In the bulk O/C and H/C space, i.e. in a Van Krevelen plot, there is a remarkable agreement in both absolute magnitude and oxidation trajectory between CI-ToFMS data and those from a high resolution aerosol mass spectrometer (HR-AMS. This indicates that the CI-ToFMS data captures much of the chemical change occurring in the particle and that gas phase species, which are not detected by the HR-AMS, do not dominate the overall ion signal. Finally, the data illustrate the capability of aerosol-CI-ToFMS to monitor specific chemical change, including the fragmentation and functionalization reactions that occur during organic oxidation, and the oxidative conversion of dimeric SOA species into monomers. Overall, aerosol-CI-ToFMS is a valuable, selective complement to some common SOA characterization methods, such as AMS and spectroscopic techniques. Both

  15. Synthesis of one-dimensional boron-related nanostructures by chemical vapor deposition

    Science.gov (United States)

    Guo, Li

    Motivated by the extensive research on carbon nanotubes (CNTs), boron and its related nano-structures have attracted increasing interest for potential applications in nanodevices and nanotechnologies, due to their extraordinary properties. In this work, different types of B-related nanostructures were successfully grown on oxidized Si substrates with or without transition metal catalysts in CVD processes. The gas chemistry was monitored by in-situ mass-spectroscopy and optical emission spectroscopy. These helped to identify the gas reactive species during the deposition, creating thereby a controllable, optimum synthesis process and helping in identifying the growth mechanism. The boron nitride nanotubes (BNNTs) were successfully synthesized at the low substrate temperatures of 600-800°C by a microwave plasma CVD process, using diborane and ammonia as the gas precursors. The optimum growth conditions of BNNTs were investigated by varying the experimental parameters, such as catalyst film thickness, substrate temperature, diborane flow rate, and growth time. The dense and crystalline BNNT deposits were obtained on 1nm nickel (Ni) or cobalt (Co) thin film coated oxidized Si (111) at a temperature of 800°C, a pressure of 15 torr, microwave power of 800 W, diborane flow rate (5 vol.% in hydrogen) of 5 sccm, ammonia flow rate of 27.5 sccm, hydrogen flow rate of 10sccm, and a deposition time of 1 hour. These nanotubes were either self-assembled in bundles or as a single tube with a diameter less than 10 nm. Raman spectra together with electron diffraction pattern indicated a hexagonal crystalline structure for these BN nanostructures. A growth mechanism of BNNTs involving dissolution-supersaturation-precipitation of BN in the metal catalysts was proposed. It was shown that the growth of BN nanostructures strongly depended on the catalyst and its film thickness, which resulted in the selective growth of BNNTs on the patterned catalyst islands. Ni dots with the diameters

  16. A soluble class I molecule analogous to mouse Q10 in the horse and related species.

    Science.gov (United States)

    Lew, A M; Valas, R B; Maloy, W L; Coligan, J E

    1986-01-01

    Horse serum is shown to contain a soluble class I molecule analogous to the secreted Q10 molecule in the mouse. This molecule has several similarities to the recently described mouse Q10 molecule: it is smaller than membrane-bound equine class I molecules; it occurs in a high molecular mass complex of 200-300 kd in serum; and the serum levels of the equine molecule are similar to that of the Q10 molecule (about 30 micrograms/ml). A soluble molecule is also detected in the sera of species related to the horse; it has in fact been found in all the wild members of the order Perissodactyla so far tested. However, it was not detected in the serum of members of the orders Carnivora, Sirenia, Proboscidea, Artiodactyla, and Primates that were tested, nor in the serum of members of the order Rodentia other than in that of the genus Mus. PMID:3519445

  17. Secondary metabolites characteristic of Penicillium citrinum, Penicillium steckii and related species

    DEFF Research Database (Denmark)

    Malmstrom, J.; Christophersen, C.; Frisvad, Jens Christian

    2000-01-01

    Two new carboxylic acids, tanzawaic acid E (1) and F (2) in addition to the unknown benzopyran 3,7-dimethyl-1,8-dihydroxy6-methoxy-isochroman (3), and the known mycotoxin 3,7-dimethyl-8-hydroxy-6-methoxyisochroman (4) were produced by a marine-derived strain of Penicillium steckii isolated from an...... unidentified tunicate. The carboxylic acids and the benzopyran were identified on the basis of mass spectrometry, and one and two dimensional NMR spectroscopic techniques. The structures 1 and 2 resemble tanzawaic acid A-D, previously isolated from Penicillium citrinum. Screening of isolates of species related...... to P. citrinum and P. steckii showed that P. citrinum (25 isolates) consistently produced citrinin and tanzawaic acid A. P. steckii (18 isolates) produced isochroman toxins (except 2) and tanzawaic acid E. P. sizovae consistently produced tanzawaic acid A. P. corylophilum (10 isolates) produced...

  18. Saprolegnia bulbosa sp. nov. isolated from an Argentine stream: taxonomy and comparison with related species.

    Science.gov (United States)

    Steciow, Mónica Mirta; Paul, Alan; Bala, Kanak

    2007-03-01

    Saprolegnia bulbosa sp. nov. was isolated from floating and decaying twigs and leaves in El Gato stream, Partido de La Plata, Buenos Aires Province, Argentina. The distinctive characteristics of S. bulbosa are the product of smooth oogonia and predominantly contorted monoclinous, androgynous and diclinous antheridia. The oogonial stalks are usually bent, curved or once coiled; oospores are subcentric, (1) 2-15 (45) per oogonium and are variable in size. Taxonomical description of this new species, its comparison with related oomycetes of the genus and the nucleotide sequences of the internal transcribed region (spacers ITS1, ITS2 and the gene 5.8S) of its rRNA gene are given here. PMID:17328749

  19. Tree species related functional properties of dissolved and total organic matter in throughfall, stemflow and forest floor solutions

    Science.gov (United States)

    Michalzik, Beate; Bischoff, Sebastian; Schwarz, Martin; Siemens, Jan; Thieme, Lisa; Wilcke, Wolfgang

    2016-04-01

    The amount and chemical nature of water-bound organic matter is a prerequisite for advancing our understanding of the C and nutrient cycling and associated ecosystem processes. While many investigations have addressed the nature and dynamics of DOM in terrestrial ecosystems, only a few have investigated the dynamics and composition of water-bound total OM (TOM) including the particulate organic matter fraction (POM; 0.45 μm forest floor (FF) are insufficiently understood. In particular we asked: How do tree species and forest types affect the amount of dissolved and particulate C and N in TF and FF solutions and thus the input into the mineral soil? Do functional properties (e.g. aromaticity) of DOM and TOM differ in TF, SF and FF solutions collected in beech and spruce stands and among different beech stands across Germany? To monitor (mineral) soil input fluxes of DOM and POM in different spruce and beech forests, we fortnightly sampled TF and FF solution over three years (2010-2012) in the "Hainich-Dün-Exploratory", Thuringia, Central Germany, which forms part of the DFG SPP 1374 "Exploratories for Large-scale and Long-term Functional Biodiversity Research". To characterize chemical properties of DOM and TOM, we applied solid-state 13C NMR spectroscopy to TF, SF and FF solutions from three European beech regions across Germany and from Norway spruce sites of the Hainich-Dün-Exploratory. Fluxes of POC and PN were highly variable between years and added significantly to the annual budgets of DOC and DN in TF and FF solutions especially in beech forests. The non-consideration of these particle-bound element fluxes remarkable underestimates the TOC input to the soil by 30 to 40% and those of TN by 10 to 20%. We therefore emphasize the imperative to include POC and PN fluxes into C and N budgeting of forest ecosystems. 13C NMR spectroscopy revealed remarkable tree-species related differences in the composition of DOM and TOM. Compared to DOM, TOM generally showed

  20. Prevalence of self-reported symptoms and consequences related to inhalation of airborne chemicals in a Danish general population

    DEFF Research Database (Denmark)

    Linneberg, Allan; Dirksen, Asger; Elberling, Jesper; Berg, Nikolaj Drimer

    2008-01-01

    To estimate the prevalence and consequences of self-reported symptoms related to inhalation of airborne chemicals in a Danish general population.......To estimate the prevalence and consequences of self-reported symptoms related to inhalation of airborne chemicals in a Danish general population....

  1. Chemical and physical properties of two-year short-rotation deciduous species. [Olea sp. , Populus deltoides, Platanus sp. , Alnus glutinosa, Paulownia tomentosa, Robina pseudoacacia, Acer saccharinum

    Energy Technology Data Exchange (ETDEWEB)

    Lee, C.S

    1982-01-01

    The following seven broadleaved species were tested: autumn olive (Olea sp.) eastern cottonwood (Populus deltoides), sycamore (Platanus species), black alder (Alnus glutinosa), royal paulownia (Paulownia tomentosa), black locust (Robina pseudoacacia) and silver maple (Acer saccharinum). The species and portions both significantly affected the chemical and the physical findings of the juvenile wood. The ages, which were tested in factorial combination with the species, also showed a significant effect on both the chemical and the physical properties of wood. All of the results indicated that both chemical and physical properties did vary with species, among the portions of the wood, and according to the ages of the wood. From the portion standpoint, the bark had higher gross heat content, sulphur content, ash content and lignin content, and it was also higher in all three kinds of extractives contents. The wood portion was found to be rich in holocellulose, alpha-cellulose and pentosan. In considering the chemical and physical properties of juvenile wood among the species, eastern cottonwood was found to have the highest value for ash content and all of the three kinds of extractives content. Paulownia had the highest value for sulphur content. Black locust had highest gross heat content, holocellulose and alpha-cellulose contents. Silver maple had highest lignin content. Results from this study showed that these seven juvenile hardwood species can produce high biomass yields of fibre and energy when grown under intensive care in central and southern Illinois sites. The best species of these seven tested woods seem to be black locust, which could also serve as a raw material for the pulp and paper industry, as well as for a fuel for energy generation. However, further economic and energy efficiency analyses are needed before judging the feasibility of these short-rotation juvenile hardwood species.

  2. Enhancement of chemically induced reactive oxygen species production and DNA damage in human SH-SY5Y neuroblastoma cells by 872 MHz radiofrequency radiation

    International Nuclear Information System (INIS)

    The objective of the study was to investigate effects of 872 MHz radiofrequency (RF) radiation on intracellular reactive oxygen species (ROS) production and DNA damage at a relatively high SAR value (5 W/kg). The experiments also involved combined exposure to RF radiation and menadione, a chemical inducing intracellular ROS production and DNA damage. The production of ROS was measured using the fluorescent probe dichlorofluorescein and DNA damage was evaluated by the Comet assay. Human SH-SY5Y neuroblastoma cells were exposed to RF radiation for 1 h with or without menadione. Control cultures were sham exposed. Both continuous waves (CW) and a pulsed signal similar to that used in global system for mobile communications (GSM) mobile phones were used. Exposure to the CW RF radiation increased DNA breakage (p < 0.01) in comparison to the cells exposed only to menadione. Comparison of the same groups also showed that ROS level was higher in cells exposed to CW RF radiation at 30 and 60 min after the end of exposure (p < 0.05 and p < 0.01, respectively). No effects of the GSM signal were seen on either ROS production or DNA damage. The results of the present study suggest that 872 MHz CW RF radiation at 5 W/kg might enhance chemically induced ROS production and thus cause secondary DNA damage. However, there is no known mechanism that would explain such effects from CW RF radiation but not from GSM modulated RF radiation at identical SAR

  3. POPULATION SYNCHRONY WITHIN AND AMONG LEPIDOPTERA SPECIES IN RELATION TO WEATHER, PHYLOGENY, AND LARVEL PHENOLOGY

    Science.gov (United States)

    1. The population dynamics of native herbivore species in central Appalachian deciduous forests were studied by analysing patterns of synchrony among intra- and interspecific populations and weather. 2. Spatial synchrony of 10 Lepidoptera species and three weather variables (min...

  4. Redescription of Crematogastercypria Santschi, 1930, new status, with description of two new related species from Greece and Turkey (Hymenoptera, Formicidae).

    Science.gov (United States)

    Salata, Sebastian; Borowiec, Lech

    2015-01-01

    Crematogaster (Crematogaster) jehovaevar.cypria Santschi, 1930 is raised to species rank. Two new, related species are described from the north-eastern part of the Mediterranean Basin: Crematogaster (Crematogaster) erectepilosasp. n. (Dodecanese, Greece) and Crematogaster (Crematogaster) gullukdagensissp. n. (Antalya Prov., Turkey). These three species are well distinguished from other species of the subgenus Crematogaster of the north-eastern part of the Mediterranean Basin in their first gastral tergite bearing numerous erect setae. Colour photographs of all taxa are provided, a key to the species of Crematogastercypria group and species groups of the Crematogaster s. str. from the north-eastern Mediterranean region are given and a list of Crematogaster s. str. described from this region is provided (see Appendix). PMID:26052239

  5. [DNA and chemical analyses of commercial fly agaric-related products].

    Science.gov (United States)

    Maruyama, Takuro; Kawahara, Nobuo; Fukiharu, Toshimitsu; Yokoyama, Kazumasa; Makino, Yukiko; Goda, Yukihiro

    2005-04-01

    Since June 6, 2002, psilocin and psilocybin-containing fungi (commonly called "magic mushrooms") have been regulated by the Narcotics and Psychotropics Control Law in Japan. However, various fly agaric-related products are now entering the Japanese market via the internet. In this study, fly agaric-related products available in this way were investigated for raw materials by DNA analysis and for additives by chemical analysis. Nucleotide sequence analysis of the mitochondrial 12S rDNA region suggested that these fly agaric-related products originate from A. muscaria or A. muscaria var. persicina. Furthermore, they were classified into three strains based on the ITS2-LSU nucleotide sequence. Harmine derivatives and/or tryptamine derivatives were detected in some of these products by LC/MS analysis. In accordance with this, the matK gene of Peganum harmala was found in all of the harmine derivative-containing samples. PMID:16018591

  6. Taxonomic evaluation of Streptomyces hirsutus and related species using multi-locus sequence analysis

    Science.gov (United States)

    Phylogenetic analyses of species of Streptomyces based on 16S rRNA gene sequences resulted in a statistically well-supported clade (100% bootstrap value) containing 8 species having very similar gross morphology. These species, including Streptomyces bambergiensis, Streptomyces chlorus, Streptomyces...

  7. Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity.

    Science.gov (United States)

    Bredeson, Jessen V; Lyons, Jessica B; Prochnik, Simon E; Wu, G Albert; Ha, Cindy M; Edsinger-Gonzales, Eric; Grimwood, Jane; Schmutz, Jeremy; Rabbi, Ismail Y; Egesi, Chiedozie; Nauluvula, Poasa; Lebot, Vincent; Ndunguru, Joseph; Mkamilo, Geoffrey; Bart, Rebecca S; Setter, Tim L; Gleadow, Roslyn M; Kulakow, Peter; Ferguson, Morag E; Rounsley, Steve; Rokhsar, Daniel S

    2016-05-01

    Cassava (Manihot esculenta) provides calories and nutrition for more than half a billion people. It was domesticated by native Amazonian peoples through cultivation of the wild progenitor M. esculenta ssp. flabellifolia and is now grown in tropical regions worldwide. Here we provide a high-quality genome assembly for cassava with improved contiguity, linkage, and completeness; almost 97% of genes are anchored to chromosomes. We find that paleotetraploidy in cassava is shared with the related rubber tree Hevea, providing a resource for comparative studies. We also sequence a global collection of 58 Manihot accessions, including cultivated and wild cassava accessions and related species such as Ceará or India rubber (M. glaziovii), and genotype 268 African cassava varieties. We find widespread interspecific admixture, and detect the genetic signature of past cassava breeding programs. As a clonally propagated crop, cassava is especially vulnerable to pathogens and abiotic stresses. This genomic resource will inform future genome-enabled breeding efforts to improve this staple crop. PMID:27088722

  8. Simple sequence repeat markers useful for sorghum downy mildew (Peronosclerospora sorghi and related species

    Directory of Open Access Journals (Sweden)

    Odvody Gary N

    2008-11-01

    Full Text Available Abstract Background A recent outbreak of sorghum downy mildew in Texas has led to the discovery of both metalaxyl resistance and a new pathotype in the causal organism, Peronosclerospora sorghi. These observations and the difficulty in resolving among phylogenetically related downy mildew pathogens dramatically point out the need for simply scored markers in order to differentiate among isolates and species, and to study the population structure within these obligate oomycetes. Here we present the initial results from the use of a biotin capture method to discover, clone and develop PCR primers that permit the use of simple sequence repeats (microsatellites to detect differences at the DNA level. Results Among the 55 primers pairs designed from clones from pathotype 3 of P. sorghi, 36 flanked microsatellite loci containing simple repeats, including 28 (55% with dinucleotide repeats and 6 (11% with trinucleotide repeats. A total of 22 microsatellites with CA/AC or GT/TG repeats were the most abundant (40% and GA/AG or CT/TC types contribute 15% in our collection. When used to amplify DNA from 19 isolates from P. sorghi, as well as from 5 related species that cause downy mildew on other hosts, the number of different bands detected for each SSR primer pair using a LI-COR- DNA Analyzer ranged from two to eight. Successful cross-amplification for 12 primer pairs studied in detail using DNA from downy mildews that attack maize (P. maydis & P. philippinensis, sugar cane (P. sacchari, pearl millet (Sclerospora graminicola and rose (Peronospora sparsa indicate that the flanking regions are conserved in all these species. A total of 15 SSR amplicons unique to P. philippinensis (one of the potential threats to US maize production were detected, and these have potential for development of diagnostic tests. A total of 260 alleles were obtained using 54 microsatellites primer combinations, with an average of 4.8 polymorphic markers per SSR across 34

  9. The relative impacts of climate and land-use change on conterminous United States bird species from 2001 to 2075

    Science.gov (United States)

    Sohl, Terry L.

    2014-01-01

    Species distribution models often use climate data to assess contemporary and/or future ranges for animal or plant species. Land use and land cover (LULC) data are important predictor variables for determining species range, yet are rarely used when modeling future distributions. In this study, maximum entropy modeling was used to construct species distribution maps for 50 North American bird species to determine relative contributions of climate and LULC for contemporary (2001) and future (2075) time periods. Species presence data were used as a dependent variable, while climate, LULC, and topographic data were used as predictor variables. Results varied by species, but in general, measures of model fit for 2001 indicated significantly poorer fit when either climate or LULC data were excluded from model simulations. Climate covariates provided a higher contribution to 2001 model results than did LULC variables, although both categories of variables strongly contributed. The area deemed to be "suitable" for 2001 species presence was strongly affected by the choice of model covariates, with significantly larger ranges predicted when LULC was excluded as a covariate. Changes in species ranges for 2075 indicate much larger overall range changes due to projected climate change than due to projected LULC change. However, the choice of study area impacted results for both current and projected model applications, with truncation of actual species ranges resulting in lower model fit scores and increased difficulty in interpreting covariate impacts on species range. Results indicate species-specific response to climate and LULC variables; however, both climate and LULC variables clearly are important for modeling both contemporary and potential future species ranges.

  10. Molecular evolution of the E8 promoter in tomato and some of its relative wild species

    Indian Academy of Sciences (India)

    Lingxia Zhao; Liya Lu; Lida Zhang; Aoxue Wang; Ning Wang; Zhuobin Liang; Xiaowen Lu; Kexuan Tang

    2009-03-01

    The E8 gene is related to ethylene biosynthesis in plants. To explore the effect of the expression pattern of the E8 gene on different E8 promoters, the molecular evolution of E8 promoters was investigated. A total of 16 E8 promoters were cloned from 16 accessions of seven tomato species, and were further analysed. The results from 19 E8 promoters including three previously cloned E8 promoters (X13437, DQ317599 and AF515784) showed that the size of the E8 promoters varied from 2101 bp (LA2150) to 2256 bp (LA2192); their sequences shared 69.9% homology and the average A/T content was 74.9%. Slide-window analysis divided E8 promoters into three regions – A, B and C – and the sequence identity in these regions was 72.5%, 41.2% and 70.8%, respectively. By searching the cis-elements of E8 promoters in the PLACE database, mutant nucleotides were found in some functional elements, and deletions or insertions were also found in regions responsible for ethylene biosysnthesis (–1702 to –1274) and the negative effect region (–1253 to –936). Our results indicate that the size of the functional region for ethylene biosynthesis in the E8 promoter could be shortened from 429 bp to 113 bp (–1612 to –1500). The results of molecular evolution analysis showed that the 19 E8 promoters could be classified into four clade groups, which is basically consistent with evolution of the tomato genome. Southern blot analysis results showed that the copy number of E8 promoters in tomato and some other wild species changed from 1 to 4. Taken together, our study provides important information for further elucidating the E8 gene expression pattern in tomato, analysing functional elements in the E8 promoter and reconstructing the potent E8 promoter.

  11. Different responses of two Mosla species to potassium limitation in relation to acid rain deposition

    Institute of Scientific and Technical Information of China (English)

    Meng WANG; Bao-jing GU; Ying GE; Zhen LIU; De-an JIANG; Scott X. CHANG; Jie CHANG

    2009-01-01

    The increasingly serious problem of acid rain is leading to increased potassium (K) loss from soils, and in our field investigation, we found that even congenerically relative Mosla species show different tolerance to K-deficiency. A hydroponic study was conducted on the growth of two Mosla species and their morphological, physiological and stoichiometric traits in response to limited (0.35 mmol K/L), normal (3.25 mmol K/L) and excessive (6.50 mmol K/L) K concentrations. Mosla hang-chowensis is an endangered plant, whereas Mosla dianthera a widespread weed. In the case of M. hangchowensis, in comparison with normal K concentration, K-limitation induced a significant reduction in net photosynthetic rate (Pn), soluble protein content, and superoxide dismutase (SOD) activity, but an increase in malondialdehyde (MDA) concentration. However, leaf mass ratio (LMR) and root mass ratio (RMR) were changed little by K-limitation. In contrast, for M. dianthera, K-limitation had little effect on Pn, soluble protein content, SOD activity, and MDA concentration, but increased LMR and RMR. Critical values of N (nitrogen):K and K:P (phosphorus) ratios in the shoots indicated that limitation in acquiring K occurred under K-limited conditions for M. hangchowensis but not for M. dianthera. We found that low K content in natural habitats was a restrictive factor in the growth and distribution of M. hangchowensis, and soil K-deficiency caused by acid rain worsened the situation of M. hangchowensis, while M. dianthera could well acclimate to the increasing K-deficiency. We suggest that controlling the acid rain and applying K fertilizers may be an effective way to rescue the endangered M. hangchowensis.

  12. Hygroscopic properties of the Paris urban aerosol in relation to its chemical composition

    OpenAIRE

    K. A. Kamilli; L. Poulain; A. Held; Nowak, A.; Birmili, W.; Wiedensohler, A.

    2014-01-01

    Aerosol hygroscopic growth factors and chemical properties were measured as part of the MEGAPOLI "Megacities Plume Case Study" at the urban site Laboratoire d'Hygiène de la Ville de Paris (LHVP) in the city center of Paris from June to August 2009, and from January to February 2010. Descriptive hygroscopic growth factors (DGF) were derived in the diameter range from 25 to 350 nm at relative humidities of 30, 55, 75, and 90% by applying the summation method on humidified and ...

  13. Recent developments in methods of chemical analysis in investigations of firearm-related events.

    Science.gov (United States)

    Zeichner, Arie

    2003-08-01

    A review of recent (approximately the last ten years) developments in the methods used for chemical analysis in investigations of firearm-related events is provided. This review discusses:examination of gunshot (primer) residues (GSR) and gunpowder (propellant) residues on suspects and their clothing;detection of firearm imprints on the hands of suspects;identification of the bullet entry holes and estimation of shooting distance;linking weapons and/or fired ammunition to the gunshot entries, and estimation of the time since discharge. PMID:12811451

  14. Scientific Opinion on the safety and efficacy of aliphatic and alicyclic ethers (chemical group 16 when used as flavourings for all animal species

    Directory of Open Access Journals (Sweden)

    EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP

    2012-11-01

    Full Text Available Chemical group 16 consists of aliphatic and alicyclic ethers, of which four are currently authorised for use as flavours in food. The FEEDAP Panel was unable to perform an assessment of 1,5,5,9-tetramethyl-13-oxatricyclo[8.3.0.0.(4.9]tridecane and theaspirane because of issues related to the purity of the compounds. The FEEDAP Panel concludes that: i1,8-cineole is safe at the high use level proposed by the applicant (5 mg/kg complete feed for all animal species with a margin of safety of 5.6 to 28.2; ii2-(2-methylprop-1-enyl-4-methyltetrahydropyran (Class II is safe at a maximum of 0.3 mg/kg complete feed for cattle, salmonids and non food producing animals and of 0.5 mg/kg complete feed for pigs and poultry. The absence of a margin of safety would not allow the simultaneous administration in feed and water for drinking of these substances. The total dose from all sources should not exceed that recommended when given in feed alone. No safety concern would arise for the consumer from the use of compounds belonging to CG 16 up to the highest safe level in feedingstuffs for all animal species. The FEEDAP Panel considers it prudent to treat both compounds under assessment as irritants to skin, eyes and respiratory tract, and as skin sensitisers. The FEEDAP Panel considers that the concentrations of the compounds belonging to CG 16 in the environment are not expected to exceed levels of concern when used in animal feeds at the levels considered to be safe to the target species. Since these compounds are used in food as flavourings, and their function in feed is essentially the same as that in food, no further demonstration of efficacy is necessary.

  15. Chemical fractionation tests on South African coal sources to obtain species-specific information on ash fusion temperatures (AFT)

    Energy Technology Data Exchange (ETDEWEB)

    J.C. van Dyk; L.L. Baxter; J.H.P. van Heerden; R.L.J. Coetzer [Sasol Technology, Sasolburg (South Africa). Syngas and Coal Technologies, R& amp; D Division

    2005-10-01

    Detailed coal and feedstock characteristics are essential to predict gasification performance when a specific coal source is to be gasified. One property that specifically gives detail information on the suitability of a coal source for gasification purposes is the ash fusion temperature (AFT). The AFT of a coal source indicates the extent to which ash agglomeration and ash clinkering are likely to occur within the gasifier. The principal aim of this paper is to obtain mineral species-specific information on ash properties and the specific affect on AFT. Chemical fractionation treatment resulted in coals having different mineral properties that can be used to explain the affect of specific minerals on the AFT of coal. The highest concentration and species of minerals were removed from the coal by acid leaching (HCl and HNO{sub 3}) where Al, Ca, Mg, Na and Fe were removed in high concentrations from the coal. The AFT of coal after leaching increased to {gt}1600{sup o}C. Based on the 95% confidence intervals depicted the following components can be highlighted as having a statistical significant effect on the AFT: Al{sub 2}O{sub 3}, Fe{sub 2}O{sub 3}, CaO, MgO, P{sub 2}O{sub 5} and SiO{sub 2}-Al{sub 2}O{sub 3} combination. When mineral ratio was used, the best correlation coefficient ) with AFT was obtained with the dolomite ratio. This is in agreement with the results obtained from the correlations between the AFT and the ash composition where CaO and MgO resulted in the best correlation with AFT. Results presented in this paper again highlights the fact and confirmed work from other researchers that ash composition (elemental analyses) on its own does not explain AFT behavior or commercial performance of coal accurately. 14 refs., 6 figs., 6 tabs.

  16. Ability of structurally diverse natural products and synthetic chemicals to induce gene expression mediated by estrogen receptors from various species.

    Science.gov (United States)

    Matthews, J B; Fertuck, K C; Celius, T; Huang, Y-W; Fong, C J; Zacharewski, T R

    2002-10-01

    The ability of 14 structurally diverse estrogenic compounds to induce reporter gene expression mediated by estrogen receptors (ERs) from different species was examined. MCF-7 cells were transiently transfected with a Gal4-regulated luciferase reporter gene (17m5-G-Luc) and Gal4-ER chimeric receptors containing the D, E and F domains of the human alpha (Gal4-hERalphadef), mouse alpha (Gal4-mERalphadef), mouse beta (Gal4-mERbetadef), chicken (Gal4-cERalphadef), green anole (Gal4-aERalphadef), Xenopus (Gal4-xERdef) or rainbow trout alpha ERs (Gal4-rtERalphadef). The efficacy of 17beta-estradiol (E2) in inducing reporter gene expression was similar among the different constructs overall, with EC(50) values ranging from 0.05 to 0.7nM. However, Gal4-rtERalphadef had an EC(50) value at 37 degrees C of 28nM, though at 20 degrees C an EC(50) value of 1nM was observed. Despite a similar response to E2 treatment among the ERs, many differences were observed in the magnitude of the response to other structurally diverse chemicals. For example, coumestrol induced Gal4-mERbetadef- and Gal4-aERdef-mediated reporter gene expression 164- and 8-fold greater, respectively, than mediated with the other Gal4-ERs. As well, in contrast to results with other Gal4-ERs, alpha-zearalenol consistently induced Gal4-rtERalphadef-mediated reporter gene activity at lower concentrations than did E2. Overall, the results demonstrate that selected estrogenic compounds exhibit a differential ability to induce reporter gene activity mediated by ERs from different vertebrate species. These data also highlight the importance of incubation temperature when examining rtERalpha-mediated activity. PMID:12477484

  17. Speciation of trace elements in biological samples by nuclear analytical and related techniques coupled with chemical and biochemical separation

    International Nuclear Information System (INIS)

    In the past, most analytical problems relating to biological systems were addressed by measuring the total concentrations of elements. Now there is increasing interest of the importance of their chemical forms, in which an element is present in biological systems, e.g., the oxidation state, the binding state with macromolecules, or even the molecular structure. The biological effects of chromium, which is classified as an essential nutrient, are dependent upon its oxidation. state. In general, trivalent chromium is biochemically active, whereas hexavalent chromium is considered to be toxic. Mercury is one of serious environmental persistent pollutants. However, organic forms of mercury are known to possess much higher toxicity than inorganic mercury. Therefore, information on speciation is critically required in order to better understanding of their bioavailability, metabolism, transformation, and toxicity in vivo. Recently, chemical speciation of selenium, mercury, copper, zinc, iron, and so on, has been investigated by INAA, ICP-MS, XRF, EXAFS and related techniques combined with chemical and biochemical separation (extraction, chromatography, gel electrophoresis, etc.). INAA, XRF, and ICP-MS have superior advantages in aspect of multielemental analysis with high accuracy and sensitivity, which render the possibility of analyzing various elements of interest simultaneously. These offline or online techniques have been flexibly applied to different biological matrixes, such as human hair, serum, urine, various tissues and organs in our researches. In addition, EXAFS provides structural information about the moiety of metal centers up to a distance of approximately 4-5 Anstrom. For instance, hepatocellular carcinoma (HCC) is one of the most common cancers worldwide. Imbalance of elements, such as Se, Zn, Fe, Cu, Cd, Ca, etc., has been found in the whole blood or serum of patients with HCC. We found that the profiles of Se, Cd, Fe, Zn and Cu-containing proteins

  18. Protein Content and Amino Acid Composition in Grains of Wheat-Related Species

    Institute of Scientific and Technical Information of China (English)

    JIANG Xiao-ling; TIAN Ji-chun; HAO Zhi; ZHANG Wei-dong

    2008-01-01

    The protein content and amino acid composition for 17 wheat-related species(WRS)and three common wheats(control) were determined and analyzed,and the essential amino acids(EAAs)in WRS were evaluated according to FAO/WHO amino acid recommendations.The results showed that the mean protein content for WRS was 16.67%,which was 23.21% higher than that for the control.The mean contents(g 100 g-1 protein)of most amino acids for WRS were lysine 2.74%,threonine 2.83%,phenylalanine 4.17%,isoleucine 3.42%,valine 3.90%,histidine 2.81%,glutamic acid 29.96%,proline 9.12%,glycine 3.59%,alanine 3.37%,and cysteine 1.57%,which were higher than those for the control.The contents of the other 6 amino acids for WRS were lower than those for the control.The materials(Triticum monococcum L.,Triticum carthlicum Nevski,and Triticum turgidum L.)contained relatively high concentration of the most deficient EAAs(lysine, threonine,and methionine).Comparing with FAO/WHO amino acid recommendations,the amino acid scores(AAS)of lysine(49.8%),threonine(70.7%),and sulfur-containing amino acids(74.8%)were the lowest,which were considered as the main limiting amino acids in WRS.It was observed that the materials with Triticum urartu Tum.(AA)and Aegilops speltoides Tausch.(SS)genomes had relatively high contents of protein and EAA.The contents of protein(16.91%), phenylalanine(4.78%),isoleucine(3.53%),leucine(6.16%),and valine(4.09%)for the diploid materials were higher than those for the other materials.These results will provide some information for selecting parents in breeding about nutrient quality and utilization of fine gene in wheat.

  19. Screening onions and related species for resistance to Anthracnose (Colletotrichum gloeosporioides)

    International Nuclear Information System (INIS)

    Anthracnose (Colletotrichum gloeosporioides) is an airborne disease which causes significant yield losses in onion (Allium cepa var. cepa) and shallot (A. cepa var. ascalonicum) in tropical regions. There is scant variation in the response to the pathogen within A. cepa, but high resistance was found in accessions of A. fistulosum, A. galanthum, A. roylei and other onion-related species. Their introgression recently became feasible, and their resistances to temperate diseases are currently being exploited. Screening for resistance to anthracnose is facilitated by in vitro multiplication of the plant material and the use of massive experimental inoculation under conditions highly conducive to the disease (27oC, 95% relative humidity) in a growing chamber. These elements provide economic, quick, repeatable and reliable screening. Protocols for the in vitro introduction of Allium plant material, for its multiplication and its acclimatisation are provided. On average, the number of explants doubles every three to four weeks. An aggressive strain should be selected, and the inoculum produced as a suspension of conidia, which is mass sprayed on the populations to be screened. High relative humidity (100%) should be ensured by covering the plants with plastic bags during the incubation period (48 to 96 hours after inoculation). The disease is scored after two weeks. A high level of resistance was found in accessions of A. galanthum and A. fistulosum, and partial resistance in A. roylei. A genetic analysis of the resistance in A. roylei to a Brazilian isolate, revealed that it is dominantly inherited and most probably determined by more than one gene. (author)

  20. DNA barcoding in closely related species: A case study of Primula L.sect.Proliferae Pax (Primulaceae) in China

    Institute of Scientific and Technical Information of China (English)

    Hai-Fei YAN; Gang HAO; Chi-Ming HU; Xue-Jun GE

    2011-01-01

    DNA barcoding is a method of identifying species by analyzing one or a few short standardized DNA sequences. There are particular challenges in barcoding plants, especially for distinguishing closely related species. Hence, there is an urgent need to evaluate the performance of candidate loci for distinguishing between species, especially closely related species, to complement the rbcL + matK combination suggested as the core barcode for land plants. We sampled 48 individuals representing 12 species in Primula sect. Proliferae Pax in China to evaluate the performance of eight leading candidate barcode loci (matK, rbcL, rpoB, rpoCl, trnH-psbA, psbK-psbI, atpFatpH, and internal transcribed spacer (ITS)). The core combination rbcL + matK gave only 50% species resolution in sect. Proliferae. In terms of intraspecies and interspecies divergence, degree of monophyly, and sequence similarity, ITS, trnH-psbA, and psbK-psbI showed good performance as single-locus barcodes. Internal transcribed spacer displayed the highest genetic divergence and best discriminatory power, both alone and in combination with rbcL +matK (83.3% species resolution). We recommend evaluating the use of ITS for barcoding in other species. Low or single copy nuclear regions would provide more sophisticated barcoding tools in the long term, even though further research is required to find suitable loci.

  1. Estimating number of species and relative abundances in stream-fish communities: effects of sampling effort and discontinuous spatial distributions

    Science.gov (United States)

    Angermeier, Paul L.; Smogor, Roy A.

    1995-01-01

    We sampled fishes and measured microhabitat in series of contiguous habitat units (riffles, runs, pools) in three Virginia streams. We used Monte Carlo simulations to construct hypothetical series of habitat units, then examined how number of species, similarity in relative abundances, and number of microhabitats accumulated with increasing number of habitat units (i.e., sampling effort). Proportions of all species and microhabitats represented were relatively low and variable at low sampling effort, but increased asymptotically and became less variable with greater sampling effort. To facilitate comparisons among streams, we fitted simulation results to negative exponential curves. The curves indicated that 90% of the species present were usually found by sampling 5 to 14 habitat units (stream length of 22–67 stream widths). Estimates of species relative abundances required less sampling effort for a given accuracy than estimates of number of species. Rates of species accumulation (with effort) varied among streams and reflected discontinuity in species distributions among habitat units. Most discontinuity seemed to be due to low population density rather than to habitat selectivity. Results from an Illinois stream corroborated our findings from Virginia, and suggested that greater sampling effort is needed to characterize fish community structure in more homogeneous stream reaches.

  2. Relationship between reproductive allocation and relative abundance among 32 species of a Tibetan alpine meadow: effects of fertilization and grazing.

    Directory of Open Access Journals (Sweden)

    Kechang Niu

    Full Text Available BACKGROUND: Understanding the relationship between species traits and species abundance is an important goal in ecology and biodiversity science. Although theoretical studies predict that traits related to performance (e.g. reproductive allocation are most directly linked to species abundance within a community, empirical investigations have rarely been done. It also remains unclear how environmental factors such as grazing or fertilizer application affect the predicted relationship. METHODOLOGY: We conducted a 3-year field experiment in a Tibetan alpine meadow to assess the relationship between plant reproductive allocation (RA and species relative abundance (SRA on control, grazed and fertilized plots. Overall, the studied plant community contained 32 common species. PRINCIPAL FINDINGS: At the treatment level, (i RA was negatively correlated with SRA on control plots and during the first year on fertilized plots. (ii No negative RA-SRA correlations were observed on grazed plots and during the second and third year on fertilized plots. (iii Seed size was positively correlated with SRA on control plots. At the plot level, the correlation between SRA and RA were not affected by treatment, year or species composition. CONCLUSIONS/SIGNIFICANCE: Our study shows that the performance-related trait RA can negatively affect SRA within communities, which is possibly due to the tradeoffs between clonal growth (for space occupancy and sexual reproduction. We propose that if different species occupy different positions along these tradeoffs it will contribute to biodiversity maintenance in local communities or even at lager scale.

  3. The γ-gliadin multigene family in common wheat (Triticum aestivum and its closely related species

    Directory of Open Access Journals (Sweden)

    Chen Qing

    2009-04-01

    Full Text Available Abstract Background The unique properties of wheat flour primarily depend on gluten, which is the most important source of protein for human being. γ-Gliadins have been considered to be the most ancient of the wheat gluten family. The complex family structure of γ-gliadins complicates the determination of their function. Moreover, γ-gliadins contain several sets of celiac disease epitopes. However, no systematic research has been conducted yet. Results A total of 170 γ-gliadin genes were isolated from common wheat and its closely related species, among which 138 sequences are putatively functional. The ORF lengths of these sequences range from 678 to 1089 bp, and the repetitive region is mainly responsible for the size heterogeneity of γ-gliadins. The repeat motif P(Q/L/S/T/I/V/R/AF(S/Y/V/Q/I/C/LP(R/L/S/T/H/C/YQ1–2(P(S/L/T/A/F/HQQ1–2is repeated from 7 to 22 times. Sequence polymorphism and linkage disequilibrium analyses show that γ-gliadins are highly diverse. Phylogenic analyses indicate that there is no obvious discrimination between Sitopsis and Ae. tauschii at the Gli-1 loci, compared with diploid wheat. According to the number and placement of cysteine residues, we defined nine cysteine patterns and 17 subgroups. Alternatively, we classified γ-gliadins into two types based on the length of repetitive domain. Amino acid composition analyses indicate that there is a wide range of essential amino acids in γ-gliadins, and those γ-gliadins from subgroup SG-10 and SG-12 and γ-gliadins with a short repetitive domain are more nutritional. A screening of toxic epitopes shows that γ-gliadins with a pattern of C9 and γ-gliadins with a short repetitive domain almost lack any epitopes. Conclusion γ-Gliadin sequences in wheat and closely related Aegilops species are diverse. Each group/subgroup contributes differently to nutritional quality and epitope content. It is suggested that the genes with a short repetitive domain are more

  4. Daily Temperature Fluctuations Alter Interactions between Closely Related Species of Marine Nematodes.

    Directory of Open Access Journals (Sweden)

    Nele De Meester

    Full Text Available In addition to an increase in mean temperature, climate change models predict decreasing amplitudes of daily temperature fluctuations. In temperate regions, where daily and seasonal fluctuations are prominent, such decreases in daily temperature fluctuations can have a pronounced effect on the fitness of species and on the outcome of species interactions. In this study, the effect of a temperature regime with daily fluctuations versus a constant temperature on the fitness and interspecific interactions of three cryptic species of the marine nematode species complex of Litoditis marina (Pm I, Pm III and Pm IV were investigated. In a lab experiment, different combinations of species (monospecific treatment: Pm I and Pm IV and Pm III alone; two-species treatment: Pm I + Pm IV; three-species treatment: Pm I + Pm IV + Pm III were subjected to two different temperature regimes: one constant and one fluctuating temperature. Our results showed that fluctuating temperature had minor or no effects on the population fitness of the three species in monocultures. In contrast, interspecific interactions clearly influenced the fitness of all three species, both positively and negatively. Temperature regime did have a substantial effect on the interactions between the species. In the two-species treatment, temperature regime altered the interaction from a sort of mutualism to commensalism. In addition, the strength of the interspecific interactions changed depending on the temperature regime in the three-species treatment. This experiment confirms that interactions between the species can change depending on the abiotic environment; these results show that it is important to incorporate the effect of fluctuations on interspecific interactions to predict the effect of climate change on biodiversity.

  5. Chemical composition of 8 eucalyptus species' essential oils and the evaluation of their antibacterial, antifungal and antiviral activities

    Directory of Open Access Journals (Sweden)

    Elaissi Ameur

    2012-06-01

    Full Text Available Abstract Background In 1957, Tunisia introduced 117 species of Eucalyptus; they have been used as fire wood, for the production of mine wood and to fight erosion. Actually, Eucalyptus essential oil is traditionally used to treat respiratory tract disorders such as pharyngitis, bronchitis, and sinusitis. A few investigations were reported on the biological activities of Eucalyptus oils worldwide. In Tunisia, our previous works conducted in 2010 and 2011 had been the first reports to study the antibacterial activities against reference strains. At that time it was not possible to evaluate their antimicrobial activities against clinical bacterial strains and other pathogens such as virus and fungi. Methods The essential oils of eight Eucalyptus species harvested from the Jbel Abderrahman, Korbous (North East Tunisia and Souinet arboreta (North of Tunisia were evaluated for their antimicrobial activities by disc diffusion and microbroth dilution methods against seven bacterial isolates: Haemophilus influenzae, Klebsiella pneumoniae, Pseudomonas aeruginosa, Staphylococcus aureus, Streptococcus agalactiae, Streptococcus pneumoniae and Streptococcus pyogenes. In addition, the bactericidal, fungicidal and the antiviral activities of the tested oils were carried out. Results Twenty five components were identified by GC/FID and GC/MS. These components were used to correlate with the biological activities of the tested oils. The chemical principal component analysis identified three groups, each of them constituted a chemotype. According to the values of zone diameter and percentage of the inhibition (zdi, % I, respectively, four groups and subgroups of bacterial strains and three groups of fungal strains were characterized by their sensitivity levels to Eucalyptus oils. The cytotoxic effect and the antiviral activity varied significantly within Eucalyptus species oils. Conclusions E. odorata showed the strongest activity against S. aureus, H. influenzae

  6. Quantifying the relative molecular orbital alignment for molecular junctions with similar chemical linkage to electrodes

    Science.gov (United States)

    Bâldea, Ioan

    2014-11-01

    Estimating the relative alignment between the frontier molecular orbitals (MOs) that dominates the charge transport through single-molecule junctions represents a challenge for theory. This requires approaches beyond the widely employed framework provided by the density functional theory, wherein the Kohn-Sham ‘orbitals’ are treated as if they were real MOs, which is not the case. In this paper, we report results obtained by means of quantum chemical calculations, including the equation-of-motion coupled-cluster singles and doubles, which is the state-of-the-art of quantum chemistry for medium-size molecules like those considered here. These theoretical results are validated against data on the MO energy offset relative to the electrodes’ Fermi energy extracted from experiments for junctions based on 4,4’-bipyridine and 1,4-dicyanobenzene.

  7. Quantifying the relative molecular orbital alignment for molecular junctions with similar chemical linkage to electrodes

    International Nuclear Information System (INIS)

    Estimating the relative alignment between the frontier molecular orbitals (MOs) that dominates the charge transport through single-molecule junctions represents a challenge for theory. This requires approaches beyond the widely employed framework provided by the density functional theory, wherein the Kohn–Sham ‘orbitals’ are treated as if they were real MOs, which is not the case. In this paper, we report results obtained by means of quantum chemical calculations, including the equation-of-motion coupled-cluster singles and doubles, which is the state-of-the-art of quantum chemistry for medium-size molecules like those considered here. These theoretical results are validated against data on the MO energy offset relative to the electrodes’ Fermi energy extracted from experiments for junctions based on 4,4’-bipyridine and 1,4-dicyanobenzene. (paper)

  8. Hygroscopic properties of the Paris urban aerosol in relation to its chemical composition

    Science.gov (United States)

    Kamilli, K. A.; Poulain, L.; Held, A.; Nowak, A.; Birmili, W.; Wiedensohler, A.

    2014-01-01

    Aerosol hygroscopic growth factors and chemical properties were measured as part of the MEGAPOLI "Megacities Plume Case Study" at the urban site Laboratoire d'Hygiène de la Ville de Paris (LHVP) in the city center of Paris from June to August 2009, and from January to February 2010. Descriptive hygroscopic growth factors (DGF) were derived in the diameter range from 25 to 350 nm at relative humidities of 30, 55, 75, and 90% by applying the summation method on humidified and dry aerosol size distributions measured simultaneously with a humidified differential mobility particle sizer (HDMPS) and a twin differential mobility particle sizer (TDMPS). For 90% relative humidity, the DGF varied from 1.06 to 1.46 in summer, and from 1.06 to 1.66 in winter. Temporal variations in the observed mean DGF could be well explained with a simple growth model based on the aerosol chemical composition measured by aerosol mass spectrometry (AMS) and black carbon photometry (MAAP). In particular, good agreement was observed when sulfate was the predominant inorganic factor. A clear overestimation of the predicted growth factor was found when the nitrate mass concentration exceeded values of 10 μg m-3, e.g., during winter.

  9. Effects of organic chemicals derived from ambient particulate matter on lung inflammation related to lipopolysaccharide

    Energy Technology Data Exchange (ETDEWEB)

    Inoue, Ken-ichiro; Yanagisawa, Rie; Hirano, Seishiro; Kobayashi, Takahiro [National Institute for Environmental Studies, Environmental Health Sciences Division, Tsukuba, Ibaraki (Japan); Takano, Hirohisa [National Institute for Environmental Studies, Environmental Health Sciences Division, Tsukuba, Ibaraki (Japan); Kyoto Prefectural University of Medicine, Inflammation and Immunology, Graduate School of Medical Science, Kyoto (Japan); Ichinose, Takamichi [Oita University of Nursing and Health Sciences, Department of Health Science, Oita (Japan); Yoshikawa, Toshikazu [Kyoto Prefectural University of Medicine, Inflammation and Immunology, Graduate School of Medical Science, Kyoto (Japan)

    2006-12-15

    The effects of components of ambient particulate matter (PM) on individuals with predisposing respiratory disorders are not well defined. We have previously demonstrated that airway exposure to diesel exhaust particles (DEP) or organic chemicals (OC) extracted from DEP (DEP-OC) enhances lung inflammation related to bacterial endotoxin (lipopolysaccharide, LPS). The present study aimed to examine the effects of airway exposure to OC extracted from urban PM (PM-OC) on lung inflammation related to LPS. ICR mice were divided into four experimental groups that intratracheally received vehicle, LPS (2.5 mg/kg), PM-OC (4 mg/kg), or PM-OC + LPS. Lung inflammation, lung water content, and lung expression of cytokines were evaluated 24 h after intratracheal administration. LPS challenge elicited lung inflammation evidenced by cellular profiles of bronchoalveolar lavage fluid and lung histology, which was further aggravated by the combined challenge with PM-OC. The combination with PM-OC and LPS did not significantly exaggerate LPS-elicited pulmonary edema. LPS instillation induced elevated lung expression of interleukin-1{beta}, macrophage inflammatory protein-1{alpha}, macrophage chemoattractant protein-1, and keratinocyte chemoattractant, whereas the combined challenge with PM-OC did not influence these levels. All the results were consistent with our previous reports on DEP-OC. These results suggest that the extracted organic chemicals from PM exacerbate infectious lung inflammation. The mechanisms underlying the enhancing effects are not mediated via the enhanced local expression of proinflammatory cytokines. (orig.)

  10. Sr isotope evolution during chemical weathering of granites -- impact of relative weathering rates of minerals

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    The Sr isotopic systematics in the weathering profiles of biotite granite and granite porphyry in southern Jiangxi Province were investigated. The results showed that during the chemical weathering of granites, remarked fractionation occurred between Rb and Sr. During the early stages of chemical weathering of granites, the released Sr/Si and Sr/Ca ratios are larger than those of the parent rocks, and the leaching rate of Sr is higher than those of Si, Ca, K, Rb, etc. Dynamic variations in relative weathering rates of the main Sr-contributing minerals led to fluctuation with time in 87Sr/86Sr ratios of inherent and released Sr in the weathering crust of granite. Successive weathering of biotite, plagioclase and K-feldspar made 87Sr/86Sr ratios in the weathering residues show such a fluctuation trend as to decrease first, increase, and then decrease again till they maintain stable. This work further indicates that when Sr isotopes are used to trace biogeochemical processes on both the catchment and global scales, one must seriously take account of the prefer-ential release of Sr from dissolving solid phase and the fluctuation of 87Sr/86Sr ratios caused by the variations of relative weathering rates of Sr-contributing minerals.

  11. Hygroscopic properties of the Paris urban aerosol in relation to its chemical composition

    Directory of Open Access Journals (Sweden)

    K. A. Kamilli

    2013-05-01

    Full Text Available Aerosol hygroscopic growth factors and chemical properties were measured as part of the MEGAPOLI "Megacities Plume Case Study" at the urban site LHVP in the city center of Paris from June to August 2009, and from January to February 2010. Descriptive hygroscopic growth factors (DGF were derived in the diameter range from 25 to 350 nm at relative humidities of 30, 55, 75, and 90% by applying the summation method on humidified and dry aerosol size distributions measured simultaneously with a humidified differential mobility particle sizer (HDMPS and a twin differential mobility particle sizer (TDMPS. For 90% relative humidity, the DGF varied from 1.06 to 1.46 in summer, and from 1.06 to 1.66 in winter. Temporal variations in the observed mean DGF could be well explained with a simple growth model based on the aerosol chemical composition measured by aerosol mass spectrometry (AMS and black carbon photometry (MAAP. In particular, good agreement was observed when sulfate was the predominant inorganic factor. A clear overestimation of the predicted growth factor was found when the nitrate mass concentration exceeded values of 10 μg m3, e.g. during winter.

  12. Identification of a putatively multixenobiotic resistance related Abcb1 transporter in amphipod species endemic to the highly pristine Lake Baikal.

    Science.gov (United States)

    Pavlichenko, Vasiliy V; Protopopova, Marina V; Timofeyev, Maxim; Luckenbach, Till

    2015-04-01

    The fauna of Lake Baikal in Eastern Siberia, the largest freshwater body on Earth, is characterized by high degrees of biodiversity and endemism. Amphipods, a prominent taxon within the indigenous fauna, occur in an exceptionally high number of endemic species. Considering the specific water chemistry of Lake Baikal with extremely low levels of potentially toxic natural organic compounds, it seems conceivable that certain adaptions to adverse environmental factors are missing in endemic species, such as cellular defense mechanisms mitigating toxic effects of chemicals. The degree to which the endemic fauna is affected by the recently occurring anthropogenic water pollution of Lake Baikal may depend on the existence of such cellular defense mechanisms in those species. We here show that endemic amphipods express transcripts for Abcb1, a major component of the cellular multixenobiotic resistance (MXR) defense against toxic chemicals. Based on a partial abcb1 cDNA sequence from Gammarus lacustris, an amphipod species common across Northern Eurasia but only rarely found in Lake Baikal, respective homologous sequences were cloned from five amphipods endemic to Lake Baikal, Eulimnogammarus verrucosus, E. vittatus, E. cyaneus, E. marituji, and Gmelinoides fasciatus, confirming that abcb1 is transcribed in those species. The effects of thermal (25 °C) and chemical stress (1-2 mg L(-1) phenanthrene) in short-term exposures (up to 24 h) on transcript levels of abcb1 and heat shock protein 70 (hsp70), used as a proxy for cellular stress in the experiments, were exemplarily examined in E. verrucosus, E. cyaneus, and Gammarus lacustris. Whereas increases of abcb1 transcripts upon treatments occurred only in the Baikalian species E. verrucosus and E. cyaneus but not in Gammarus lacustris, changes of hsp70 transcript levels were seen in all three species. At least for species endemic to Lake Baikal, the data thus indicate that regulation of the identified amphipod abcb1 is

  13. Effect of salt species on electrochemical properties of gel-type polymer electrolyte based on chemically crosslinking rubber

    International Nuclear Information System (INIS)

    In our study, for ion-polymer interaction in gel-type polymer electrolyte (GPE), two kinds of ions were used. GPE systems were composed of Mg or Li salt, organic solvent (γ-BL), and polymer matrix prepared by chemical crosslinking of NBR with poly(ethylene glycol)methylethermethacrylate (PEGMEM) having polar group (-CH2-CH2-O-) in the side chain of monomer. GPE consisting of Li+ ion had higher ionic conductivity than that of Mg2+ ion at below 100 wt.% of electrolyte content (1 M salt/γ-BL). On the other hand, GPE consisting of Mg2+ ion had higher ionic conductivity than that consisting of Li+ ion at over 120 wt.% of electrolyte content (1 M salt/γ-BL). The maximum liquid electrolyte content was 200 wt.% for all GPE systems. And the highest ionic conductivity of 3.3 x 10-2 S cm-1 was achieved for the case of Mg2+-GPE with 200 wt.% of liquid electrolyte contents at 20 deg. C. The interaction between ionic species and polymer matrix in GPE was investigated by using Fourier transform infrared spectroscopy (FT-IR). Also, cyclic voltammogram of Mg2+-GPE confirmed the electrochemical property of divalent cation with two electron-transfer reactions

  14. Schima superba outperforms other tree species by changing foliar chemical composition and shortening construction payback time when facilitated by shrubs.

    Science.gov (United States)

    Liu, Nan; Guo, Qinfeng; Ren, Hai; Sun, Zhongyu

    2016-01-01

    A 3.5-year field experiment was conducted in a subtropical degraded shrubland to assess how a nurse plant, the native shrub Rhodomyrtus tomentosa, affects the growth of the target trees Pinus elliottii, Schima superba, Castanopsis fissa, and Michelia macclurei, and to probe the intrinsic mechanisms from leaf chemical composition, construction cost (CC), and payback time aspects. We compared tree seedlings grown nearby shrub canopy (canopy subplots, CS) and in open space (open subplots, OS). S. superba in CS showed greater growth, while P. elliottii and M. macclurei were lower when compared to the plants grown in the OS. The reduced levels of high-cost compounds (proteins) and increased levels of low-cost compounds (organic acids) caused reduced CC values for P. elliottii growing in CS. While, the levels of both low-cost minerals and high-cost proteins increased in CS such that CC values of S. superba were similar in OS and CS. Based on maximum photosynthetic rates, P. elliottii required a longer payback time to construct required carbon in canopy than in OS, but the opposite was true for S. superba. The information from this study can be used to evaluate the potential of different tree species in the reforestation of subtropical degraded shrublands. PMID:26814426

  15. The making of a pest: the evolution of a fruit-penetrating ovipositor in Drosophila suzukii and related species.

    Science.gov (United States)

    Atallah, Joel; Teixeira, Lisa; Salazar, Raul; Zaragoza, George; Kopp, Artyom

    2014-04-22

    Evolutionary innovation can allow a species access to a new ecological niche, potentially reducing competition with closely related species. While the vast majority of Drosophila flies feed on rotting fruit and other decaying matter, and are harmless to human activity, Drosophila suzukii, which has a morphologically modified ovipositor, is capable of colonizing live fruit that is still in the process of ripening, causing massive agricultural damage. Here, we conducted the first comparative analysis of this species and its close relatives, analysing both ovipositor structure and fruit susceptibility. We found that the ovipositor of the species most closely related to D. suzukii, Drosophila subpulchrella, has a similar number of enlarged, evolutionarily derived bristles, but a notably different overall shape. Like D. suzukii, D. subpulchrella flies are capable of puncturing the skin of raspberries and cherries, but we found no evidence that they could penetrate the thicker skin of two varieties of grapes. More distantly related species, one of which has previously been mistaken for D. suzukii, have blunt ovipositors with small bristles. While they did not penetrate fruit skin in any of the assays, they readily colonized fruit interiors where the skin was broken. Our results suggest that considering evolutionary context may be beneficial to the management of invasive species. PMID:24573846

  16. Concerted evolution of duplicated mitochondrial control regions in three related seabird species

    Directory of Open Access Journals (Sweden)

    Birt Tim P

    2010-01-01

    Full Text Available Abstract Background Many population genetic and phylogenetic analyses of mitochondrial DNA (mtDNA assume that mitochondrial genomes do not undergo recombination. Recently, concerted evolution of duplicated mitochondrial control regions has been documented in a range of taxa. Although the molecular mechanism that facilitates concerted evolution is unknown, all proposed mechanisms involve mtDNA recombination. Results Here, we document a duplication of a large region (cytochrome b, tRNAThr, tRNAPro, ND6, tRNAGlu and the control region in the mitochondrial genome of three related seabird species. To investigate the evolution of duplicate control regions, we sequenced both control region copies (CR1 and CR2 from 21 brown (Sula leucogaster, 21 red-footed (S. sula and 21 blue-footed boobies (S. nebouxii. Phylogenetic analysis suggested that the duplicated control regions are predominantly evolving in concert; however, approximately 51 base pairs at the 5' end of CR1 and CR2 exhibited a discordant phylogenetic signal and appeared to be evolving independently. Conclusions Both the structure of the duplicated region and the conflicting phylogenetic signals are remarkably similar to a pattern found in Thalassarche albatrosses, which are united with boobies in a large clade that includes all procellariiform and most pelecaniform seabirds. Therefore we suggest that concerted evolution of duplicated control regions either is taxonomically widespread within seabirds, or that it has evolved many times.

  17. Product Variability of the ‘Cineole Cassette'Monoterpene Synthases of Related Nicotiana Species

    Institute of Scientific and Technical Information of China (English)

    Anke F(a)hnrich; Katrin Krause; Birgit Piechulla

    2011-01-01

    Nicotiana species of the section Alatae characteristically emit the floral scent compounds of the ‘cineole cassere' comprising 1,8-cineole,limonene,myrcene,α-pinene,β-pinene,sabinene,and α-terpineol.We successfully isolated genes of Nicotiana alata and Nicotiana langsdorfii that encoded enzymes,which produced the characteristic monoterpenes of this ‘cineole cassette' with α-terpineol being most abundant in the volatile spectra.The amino acid sequences of both terpineol synthases were 99% identical.The enzymes cluster in a monophyletic branch together with the closely related cineole synthase of Nicotiana suaveolens and monoterpene synthase 1 of Solanum lycopersicum.The cyclization reactions (α-terpineol to 1,8-cineole) of the terpineol synthases of N.alata and N.langsdorfii were less efficient compared to the ‘cineole cassette′ monoterpene synthases of Arabidopsis thaliana,N.suaveolens,Salvia fruticosa,Salvia officinalis,and Citrus unshiu.The terpineol synthases of N.alata and N.langsdorfii were localized in pistils and in the adaxial and abaxial epidermis of the petals.The enzyme activities reached their maxima at the second day after anthesis when flowers were fully opened and the enzyme activity in N.alata was highest at the transition from day to night (diurnal rhythm).

  18. Spatial and seasonal changes of arsenic species in Lake Taihu in relation to eutrophication.

    Science.gov (United States)

    Yan, Changzhou; Che, Feifei; Zeng, Liqing; Wang, Zaosheng; Du, Miaomiao; Wei, Qunshan; Wang, Zhenhong; Wang, Dapeng; Zhen, Zhuo

    2016-09-01

    Spatial and seasonal variations of arsenic species in Lake Taihu (including Zhushan Bay, Meiliang Bay, Gonghu Bay, and Southern Taihu) were investigated. Relatively high levels of total arsenic (TAs) and arsenate (As(V)) were observed in hyper-eutrophic regions during summer and autumn, which is attributed to exogenous contamination and seasonal endogenous release from sediments. The distributions of TAs and As(V) were significantly affected by total phosphorus, iron, manganese, and dissolved organic carbon. Arsenite (As(III)) and methylarsenicals (the sum of monomethylarsenic acid (MMA(V)) and dimethylarsenic acid (DMA(V))), mainly from biotransformation of As(V), were affected by temperature-controlled microalgae activities and local water quality parameters, exhibiting significantly higher concentrations and proportions in hyper-eutrophic and middle eutrophic regions during summer compared to mesotrophic region. The eutrophic environment, which induces changes in the main water quality parameters such as phosphorus, chlorophyll-a, iron, manganese, and dissolved organic carbon, can favor the biogeochemical cycling of arsenic in the aquatic systems. PMID:27152991

  19. Transposons play an important role in the evolution and diversification of centromeres among closely related species

    Directory of Open Access Journals (Sweden)

    Scott eJackson

    2015-04-01

    Full Text Available Centromeres are important chromosomal regions necessary for eukaryotic cell segregation and replication. Due to high amounts of tandem repeats and transposons, centromeres have been difficult to sequence in most multicellular organisms, thus their sequence structure and evolution are poorly understood. In this study, we analyzed transposons in the centromere 8 (Cen8 from the African cultivated rice (O. glaberrima and two subspecies of the Asian cultivated rice (O. sativa, indica and japonica. We detected much higher transposon contents (>69% in centromere regions than in the whole genomes of O. sativa ssp japonica and O. glaberrima (~35%. We compared the three Cen8s and identified numerous recent insertions of transposons that were frequently organized into multiple-layer nested blocks, similar to nested transposons in maize. Except for the Hopi retrotransposon, all LTR retrotransposons were shared but exhibit different abundances amongst the three Cen8s. Even though a majority of the transposons were located in intergenic regions, some gene-related transposons were found and may be involved in gene diversification. Chromatin immunoprecipitated (ChIP data analysis revealed that 165 families from both Class I and Class II transposons were found in CENH3-associated chromatin sequences. These results indicate essential roles for transposons in centromeres and that the rapid divergence of the Cen8 sequences between the two cultivated rice species was primarily caused by recent transposon insertions.

  20. Gene expression responses of HeLa cells to chemical species generated by an atmospheric plasma flow

    Energy Technology Data Exchange (ETDEWEB)

    Yokoyama, Mayo, E-mail: yokoyama@plasma.ifs.tohoku.ac.jp [Institute of Fluid Science, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577 (Japan); Johkura, Kohei, E-mail: kohei@shinshu-u.ac.jp [Department of Histology and Embryology, Shinshu University School of Medicine, 3-1-1 Asahi, Matsumoto 390-8621 (Japan); Sato, Takehiko, E-mail: sato@ifs.tohoku.ac.jp [Institute of Fluid Science, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577 (Japan)

    2014-08-08

    Highlights: • Response of HeLa cells to a plasma-irradiated medium was revealed by DNA microarray. • Gene expression pattern was basically different from that in a H{sub 2}O{sub 2}-added medium. • Prominently up-/down-regulated genes were partly shared by the two media. • Gene ontology analysis showed both similar and different responses in the two media. • Candidate genes involved in response to ROS were detected in each medium. - Abstract: Plasma irradiation generates many factors able to affect the cellular condition, and this feature has been studied for its application in the field of medicine. We previously reported that hydrogen peroxide (H{sub 2}O{sub 2}) was the major cause of HeLa cell death among the chemical species generated by high level irradiation of a culture medium by atmospheric plasma. To assess the effect of plasma-induced factors on the response of live cells, HeLa cells were exposed to a medium irradiated by a non-lethal plasma flow level, and their gene expression was broadly analyzed by DNA microarray in comparison with that in a corresponding concentration of 51 μM H{sub 2}O{sub 2}. As a result, though the cell viability was sufficiently maintained at more than 90% in both cases, the plasma-medium had a greater impact on it than the H{sub 2}O{sub 2}-medium. Hierarchical clustering analysis revealed fundamentally different cellular responses between these two media. A larger population of genes was upregulated in the plasma-medium, whereas genes were downregulated in the H{sub 2}O{sub 2}-medium. However, a part of the genes that showed prominent differential expression was shared by them, including an immediate early gene ID2. In gene ontology analysis of upregulated genes, the plasma-medium showed more diverse ontologies than the H{sub 2}O{sub 2}-medium, whereas ontologies such as “response to stimulus” were common, and several genes corresponded to “response to reactive oxygen species.” Genes of AP-1 proteins, e.g., JUN

  1. Compatibility Relations Between the Edible Carrot Daucus Carota and D. Pusillus, a Related Wild Species from the Argentinian Pampas

    Science.gov (United States)

    To establish the feasibility of hybridization between the wild carrot species Daucus pusillus Michx. (2n = 2x = 22; 2n = 2x = 22 and 20), collected in the pampas grasslands of Argentina, and the edible carrot, Daucus carota L. (2n = 2x = 18), controlled pollinations were attempted on the plant. Due ...

  2. Effects of shading on relative competitive advantage of three species of Sphagnum

    Directory of Open Access Journals (Sweden)

    J.Z. Ma

    2015-06-01

    Full Text Available (1 Sphagnum is an important genus of bryophytes holding 10–15 % of the terrestrial carbon stock. With climate change a drier surface may increase the abundance of vascular plants on peatlands, so shading of Sphagnum may increase. Here we describe growth cabinet experiments to reveal the effects of shading on interactions among mixtures of three species: S. capillifolium, S. palustre (hummock species, and S. fallax (a hollow species. We measured the six traits: growth in length, growth as increase in dry mass, side-shoot production, nitrogen and carbon proportion of the capitulum dry mass, and C:N ratio in the capitulum. (2 Shading had no effect on biomass production or side-shoot production but increased height increment in all three species. It also increased the C and N proportions of total dry mass but decreased C:N ratio in the capitula. (3 Neighbours of a different species reduced biomass and side-shoot production in the two hummock species but had no effect on the hollow species. (4 All three species showed interaction between shading and neighbour in two or more plant traits. S. fallax showed competitive advantage over S. palustre in no-shading treatments and over S. capillifolium in moderate shading treatments. In addition, under deep shading, S. fallax showed a competitive advantage over both hummock species. A clear competitive hierarchy S. fallax>S. capillifolium>S. palustre emerged which was consistent with the hierarchy of side-shoot production. (5 The results suggest that all the species appear to tolerate deep shade (for a few months at least. In a shaded environment, especially under deeply shaded conditions, S. fallax retains its dominance in hollow habitats (if water availability is guaranteed by virtue of its advantage in side-shoot production. (6 If shading increases then the abundance of different Sphagnum species is likely to change.

  3. Demographic shifts related to mycoheterotrophy and their fitness impacts in two Cephalanthera species.

    Science.gov (United States)

    Shefferson, Richard P; Roy, Mélanie; Püttsepp, Ülle; Selosse, Marc-André

    2016-06-01

    Evolutionary losses of photosynthesis in terrestrial plants all originate in photosynthetic ancestors. The adaptive context under which this transition happens has remained elusive because of the rarity of plants in which both photosynthetic and non-photosynthetic forms exist as a polymorphism. Here, we report on demographic patterns in photosynthetic ("green") and nonphotosynthetic ("albino") individuals within populations of two such species, Cephalanthera damasonium and C. longifolia, which also acquire nutrition from their mycorrhizal hosts (partial mycoheterotrophy). We hypothesized that demographic shifts in albinos relative to greens would include compensatory patterns with respect to fitness, such that maladaptive changes to survival or reproduction would be adaptively countered by changes to other parameters, such as growth probabilities. We tracked individuals in two populations of C. damasonium for 3 yr, and in one population of C. longifolia for 14 yr. We then analyzed vital rates for both phenotypes using general linear mixed models (GLMMs) and multi-state capture mark-recapture models (CMR), and used these models to develop size-classified, function-based population projection matrices. We estimated fitness as the deterministic population growth rate (λ) for each phenotype, and explored the impact of shifts in demographic patterns to albinism via life table response experiments (LTREs). Mortality differed between greens and albinos, but not similarly across species. Albinos generally sprouted less than greens, and flowered more when small but less at other times. Albinos typically had a higher probability of fruiting, although their lower flower numbers yielded lower numbers of fruits overall. Fitness did not differ significantly among phenotypes. Thus, we did not find significant evidence that albinism is adaptive or maladaptive; however, if in fact it is the latter, then we did find evidence of incomplete compensation for declines in survival and

  4. The making of a pest: the evolution of a fruit-penetrating ovipositor in Drosophila suzukii and related species

    OpenAIRE

    Atallah, Joel; Teixeira, Lisa; Salazar, Raul; Zaragoza, George; Kopp, Artyom

    2014-01-01

    Evolutionary innovation can allow a species access to a new ecological niche, potentially reducing competition with closely related species. While the vast majority of Drosophila flies feed on rotting fruit and other decaying matter, and are harmless to human activity, Drosophila suzukii, which has a morphologically modified ovipositor, is capable of colonizing live fruit that is still in the process of ripening, causing massive agricultural damage. Here, we conducted the first comparative an...

  5. Molecular diversity of arbuscular mycorrhizal fungi in relation to soil chemical properties and heavy metal contamination

    International Nuclear Information System (INIS)

    Abundance and diversity of arbuscular mycorrhizal fungi (AMF) associated with dominant plant species were studied along a transect from highly lead (Pb) and zinc (Zn) polluted to non-polluted soil at the Anguran open pit mine in Iran. Using an established primer set for AMF in the internal transcribed spacer (ITS) region of rDNA, nine different AMF sequence types were distinguished after phylogenetic analyses, showing remarkable differences in their distribution patterns along the transect. With decreasing Pb and Zn concentration, the number of AMF sequence types increased, however one sequence type was only found in the highly contaminated area. Multivariate statistical analysis revealed that further factors than HM soil concentration affect the AMF community at contaminated sites. Specifically, the soils' calcium carbonate equivalent and available P proved to be of importance, which illustrates that field studies on AMF distribution should also consider important environmental factors and their possible interactions. - The molecular diversity of AMF was found to be influenced by a combination of soil heavy metal and other soil chemical parameters.

  6. Jupiter's composition: sign of a (relatively) late formation in a chemically evolved protosolar disk

    CERN Document Server

    Guillot, T; Guillot, Tristan; Hueso, Ricardo

    2006-01-01

    It has been proposed that the enrichment in noble gases found by Galileo in Jupiter's atmosphere can be explained by their delivery inside cold planetesimals. We propose instead that this is a sign that the planet formed in a chemically evolved disk and that noble gases were acquired mostly in gaseous form during the planet's envelope capture phase. We show that the combined settling of grains to the disk midplane in the cold outer layers, the condensation of noble gases onto these grains at temperatures below 20-30K, and the evaporation from high disk altitudes effectively lead to a progressive, moderate enrichment of the disk. The fact that noble gases are vaporized from the grains in the hot inner disk regions (e.g. Jupiter formation region) is not a concern because a negative temperature gradient prevents convection from carrying the species into the evaporating region. We show that the ~2 times solar enrichment of Ar, Kr, Xe in Jupiter is hence naturally explained by a continuous growth of the planet gov...

  7. A new species of Anastrepha from Colombia related to Mexican fruit fly (Díptera: Tephritidae

    Directory of Open Access Journals (Sweden)

    ALLEM L NORRBOM

    2005-06-01

    Full Text Available Anastrepha manizaliensis Norrbom & Korytkowski, new species, is described from Colombia. lt breeds in fruit of Juglans neotropica Diels (Juglandaceae, commonly known in Colombia as "cedro negro". The new species was previously confused with Mexican fruit fly, Anastrepha ludens (Loew, a major pest of citrus and mango, leading to quarantine problems, bul true A. ludens does not occur in Colombia.

  8. Species Distribution of Oligochaetes Related to Environmental Parameters in Lake Sapanca (Marmara Region, Turkey)

    OpenAIRE

    Şahin, Serap Koşal; Yıldız, Seray

    2011-01-01

    In order to determine the oligochaeta fauna of Lake Sapanca (Turkey), samples were collected from 5 stations monthly, between September 2000-August 2001. As a result of the study, 13 species, which belong to 9 genera, were determined. These species are Aulodrilus limnobius, Tubifex tubifex, Tubifex ignotus, Tubifex nerthus, Limnodrilus hoffmeisteri, Potamothrix hammoniensis, Potamothrix vejdovskyi, Nais communis, Spirosperma ferox, Psammoryctides barbatus, Ilyodrilus templetoni, Psammoryctide...

  9. Prevalence and Antibiotic Susceptibility of Salmonella species Isolated from Beef and its Related Samples in Techiman Municipality of Ghana

    Directory of Open Access Journals (Sweden)

    Frederick Adzitey

    2015-08-01

    Full Text Available Salmonella species are important foodborne pathogens that have been implicated in a number of foodborne outbreaks. A total of 240 beef and its related samples obtained from the Techiman Municipality of Ghana were screened using the conventional method in the Food and Drug Administration-Bacteriological Analytical Manual (FDA-BAM-USA. The overall prevalence of Salmonella species was 57.08%. The prevalence of Salmonella species ranged from 33.30% to 75.00% in the meat and its related samples (table, knife and apron, and 6.30% to 93.80% at the various meat sale points (locations where meat is sold. Prevalence of Salmonella species was significantly higher in meat (75.00%, table (60.00% and knife (60.00%, than apron (33.33%. The most contaminated meat sale point was Kenten and Main markets (93.75% and the least contaminated sale point was Sansema junction (6.25%. All the Salmonella species were susceptible to ciprofloxacin but resistant to vancomycin. Intermediate resistances occur for all the antibiotics except ciprofloxacin and vancomycin. The Salmonella species also exhibited 23 antibiotic resistant patterns with the pattern EVa (erythromycin and vancomycin being the commonest (exhibited by nine different isolates. Multiple antibiotic index (MAR index ranged from 0.11 to 0.67. This study revealed that beef and its related samples in Techiman markets are contaminated with Salmonella.

  10. Closure relations for the multi-species Euler system. Construction and study of relaxation schemes for the multi-species and multi-components Euler systems

    International Nuclear Information System (INIS)

    After having recalled the formal convergence of the semi-classical multi-species Boltzmann equations toward the multi-species Euler system (i.e. mixture of gases having the same velocity), we generalize to this system the closure relations proposed by B. Despres and by F. Lagoutiere for the multi-components Euler system (i.e. mixture of non miscible fluids having the same velocity). Then, we extend the energy relaxation schemes proposed by F. Coquel and by B. Perthame for the numerical resolution of the mono-species Euler system to the multi-species isothermal Euler system and to the multi-components isobar-isothermal Euler system. This allows to obtain a class of entropic schemes under a CFL criteria. In the multi-components case, this class of entropic schemes is perhaps a way for the treatment of interface problems and, then, for the treatment of the numerical mixture area by using a Lagrange + projection scheme. Nevertheless, we have to find a good projection stage in the multi-components case. At last, in the last chapter, we discuss, through the study of a dynamical system, about a system proposed by R. Abgrall and by R. Saurel for the numerical resolution of the multi-components Euler system

  11. A unimodal species response model relating traits to environment with application to phytoplankton communities.

    Directory of Open Access Journals (Sweden)

    Tahira Jamil

    Full Text Available In this paper we attempt to explain observed niche differences among species (i.e. differences in their distribution along environmental gradients by differences in trait values (e.g. volume in phytoplankton communities. For this, we propose the trait-modulated Gaussian logistic model in which the niche parameters (optimum, tolerance and maximum are made linearly dependent on species traits. The model is fitted to data in the Bayesian framework using OpenBUGS (Bayesian inference Using Gibbs Sampling to identify according to which environmental variables there is niche differentiation among species and traits. We illustrate the method with phytoplankton community data of 203 lakes located within four climate zones and associated measurements on 11 environmental variables and six morphological species traits of 60 species. Temperature and chlorophyll-a (with opposite signs described well the niche structure of all species. Results showed that about 25% of the variance in the niche centres with respect to chlorophyll-a were accounted for by traits, whereas niche width and maximum could not be predicted by traits. Volume, mucilage, flagella and siliceous exoskeleton are found to be the most important traits to explain the niche centres. Species were clustered in two groups with different niches structures, group 1 high temperature-low chlorophyll-a species and group 2 low temperature-high chlorophyll-a species. Compared to group 2, species in group 1 had larger volume but lower surface area, had more often flagella but neither mucilage nor siliceous exoskeleton. These results might help in understanding the effect of environmental changes on phytoplankton community. The proposed method, therefore, can also apply to other aquatic or terrestrial communities for which individual traits and environmental conditioning factors are available.

  12. Student performance study: the outcomes of metabolic, molecular and physical-chemical characterization of intestinal tract microbiome on a four mammalian species model

    Directory of Open Access Journals (Sweden)

    Nataša CIBER

    2015-11-01

    Full Text Available Many environmental factors influence the structure of microbial communities, their activity and properties of the environment of the digestive tract. Contrary to constant disturbances, the system provides the basis for energy conversion and thus the long-term stable coexistence of different hosts and their specific intestinal microbiota over geological timescales. Since the methodological approaches proved to be the largest source of systematic errors in comparisons of microbial communities among different organisms of the same species or between different species, we tested a number of methods on samples from different species of mammals in order to verify the feasibility of this approach for future routine analysis of microbiomes:(i analyses of physical-chemical parameters;(iithe metabolic properties of attached, planktonic fractions in comparison to the total;(iiistructure of microbial communities of bacteria and archaea; (ivdata analysis. We used a model of intestinal samples from four species of mammals, encompassing the differences between the various types of intestinal tracts: ruminants and rodents (such as pre- and post- peptic fermentors, omnivores and carnivores. The second purpose of the study was to(iassess the extent of spread of data due to the cooperation of the various operators on the data obtained, and(ii to evaluate the skills of the students to carry out industry-oriented investigations and measurements in 1st year of MSc study Microbiology; and(iii to promote awareness of the importance of routine laboratory work day and the corresponding duties. The results suggest(ithat the operators independently organized and shared tasks;(iisuccessfully completed all methods;(iiiobtain relevant information;(ivcritically evaluated and interpreted within the extent of their knowledge;(v that relative standard deviation(RSD typically could be compared to those of the automated analytical procedures(<10 % and therefore represented the

  13. Cyanoacetylene and its /sup 13/C species: Evidence against relative isotope fractionation and improved /sup 12/C//sup 13/C abundance ratios

    Energy Technology Data Exchange (ETDEWEB)

    Wannier, P.G.; Linke, R.A.

    1978-12-15

    We use the J=9..-->..8 transitions of HCCCN and its /sup 13/C substituted species to obtain several results in Sgr B2 and Ori A. In Sgr B2 we test for relative isotope fractionation among the three carbon sites in HCCCN and find none to a level of +- 5%. We verify that HCCCN has low opacity in both sources and derive /sup 12/C//sup 13/C isotope ratios of 50 (Ori A) and 22 (Sgr B2), an indication of galactic evolution of this important ratio. That the Orion ''plateau'' feature is especially prominent in HCCCN indicates a surprisingly large polyatomic molecule abundance for this energetic source. Our spectra also yield information about other chemical species, including a new transition of NH/sub 2/CN, an improved frequency of U81505, and a new unidentified line U79220. In addition, sensitive upper limits for NH/sub 2/CN, CH/sub 2/CO, and HNO in the Orion ''spike'' source imply that this cloud is relatively deficient in these species.

  14. Circadian rhythms differ between sexes and closely related species of Nasonia wasps.

    Directory of Open Access Journals (Sweden)

    Rinaldo C Bertossa

    Full Text Available Activity rhythms in 24 h light-dark cycles, constant darkness, and constant light conditions were analyzed in four different Nasonia species for each sex separately. Besides similarities, clear differences are evident among and within Nasonia species as well as between sexes. In all species, activity in a light-dark cycle is concentrated in the photophase, typical for diurnal organisms. Contrary to most diurnal insect species so far studied, Nasonia follows Aschoff's rule by displaying long (>24 h internal rhythms in constant darkness but short (<24 h in constant light. In constant light, N. vitripennis males display robust circadian activity rhythms, whereas females are usually arrhythmic. In contrast to other Nasonia species, N. longicornis males display anticipatory activity, i.e. activity shortly before light-on in a light-dark cycle. As expected, N. oneida shows activity patterns similar to those of N. giraulti but with important differences in key circadian parameters. Differences in circadian activity patterns and parameters between species may reflect synchronization of specific life-history traits to environmental conditions. Scheduling mating or dispersion to a specific time of the day could be a strategy to avoid interspecific hybridization in Nasonia species that live in sympatry.

  15. Seedling growth and biomass allocation in relation to leaf habit and shade tolerance among 10 temperate tree species.

    Science.gov (United States)

    Modrzyński, Jerzy; Chmura, Daniel J; Tjoelker, Mark G

    2015-08-01

    Initial growth of germinated seeds is an important life history stage, critical for establishment and succession in forests. Important questions remain regarding the differences among species in early growth potential arising from shade tolerance. In addition, the role of leaf habit in shaping relationships underlying shade tolerance-related differences in seedling growth remains unresolved. In this study we examined variation in morphological and physiological traits among seedlings of 10 forest tree species of the European temperate zone varying in shade tolerance and leaf habit (broadleaved winter-deciduous species vs needle-leaved conifers) during a 10-week period. Seeds were germinated and grown in a controlled environment simulating an intermediate forest understory light environment to resolve species differences in initial growth and biomass allocation. In the high-resource experimental conditions during the study, seedlings increased biomass allocation to roots at the cost of leaf biomass independent of shade tolerance and leaf habit. Strong correlations between relative growth rate (RGR), net assimilation rate (NAR), leaf area ratio (LAR), specific leaf area (SLA) and leaf mass fraction (LMF) indicate that physiology and biomass allocation were equally important determinants of RGR as plant structure and leaf morphology among these species. Our findings highlight the importance of seed mass- and seed size-related root morphology (specific root length-SRL) for shade tolerance during early ontogeny. Leaf and plant morphology (SLA, LAR) were more successful in explaining variation among species due to leaf habit than shade tolerance. In both broadleaves and conifers, shade-tolerant species had lower SRL and greater allocation of biomass to stems (stem mass fraction). Light-seeded shade-intolerant species with greater SRL had greater RGR in both leaf habit groups. However, the greatest plant mass was accumulated in the group of heavy-seeded shade

  16. Comparative skull analysis suggests species-specific captivity-related malformation in lions (Panthera leo.

    Directory of Open Access Journals (Sweden)

    Joseph Saragusty

    Full Text Available Lion (Panthera leo populations have dramatically decreased worldwide with a surviving population estimated at 32,000 across the African savannah. Lions have been kept in captivity for centuries and, although they reproduce well, high rates of stillbirths as well as morbidity and mortality of neonate and young lions are reported. Many of these cases are associated with bone malformations, including foramen magnum (FM stenosis and thickened tentorium cerebelli. The precise causes of these malformations and whether they are unique to captive lions remain unclear. To test whether captivity is associated with FM stenosis, we evaluated 575 lion skulls of wild (N = 512 and captive (N = 63 origin. Tiger skulls (N = 276; 56 captive, 220 wild were measured for comparison. While no differences were found between males and females or between subadults and adults in FM height (FMH, FMH of captive lions (17.36±3.20 mm was significantly smaller and with greater variability when compared to that in wild lions (19.77±2.11 mm. There was no difference between wild (18.47±1.26 mm and captive (18.56±1.64 mm tigers in FMH. Birth origin (wild vs. captive as a factor for FMH remained significant in lions even after controlling for age and sex. Whereas only 20/473 wild lions (4.2% had FMH equal to or smaller than the 5th percentile of the wild population (16.60 mm, this was evident in 40.4% (23/57 of captive lion skulls. Similar comparison for tigers found no differences between the captive and wild populations. Lions with FMH equal to or smaller than the 5th percentile had wider skulls with smaller cranial volume. Cranial volume remained smaller in both male and female captive lions when controlled for skull size. These findings suggest species- and captivity-related predisposition for the pathology in lions.

  17. 羊肉膻味组成及脱膻技术研究进展%Study on the Species-related Flavors and the Ways to Improve the Acceptability of Mutton

    Institute of Scientific and Technical Information of China (English)

    张雪梅

    2009-01-01

    The compounds that are responsible for the species-related characterizing flavors of mutton were reviewed, and the article also introduced some usual methods used now to reduce the odor of mutton. Short branched-chain fatty acids such as 4-methyloctanoic acid; 4-methylnonanoic acid and so on were considered the main compounds that were responsible for the species-related flavors of mutton. The methods that were used to improve the flavors include Chinese traditional ways, the physical and chemical ways and microbiological ways, but, there was not an effective method to industrialized produce at present.

  18. Chemical alterations and regulations of biomolecules in lifestyle-related diseases.

    Science.gov (United States)

    Miyoshi, Noriyuki

    2016-06-01

    We know experientially that not only nutrient factors but also non-nutritive functional food factors are playing important roles in maintenance of homeostasis, health promotion, and disease prevention. Although some of these effective behaviors are supported by accumulating scientific evidences, it is in general difficult to determine properly in human. Therefore, the discovering of novel biomarker and developments of the analytical method are one of the prudent strategies to understand disease etiology and evaluate efficacies of functional food factors via monitoring the pathophysiological alteration in live body, tissue, and cells. This review describes recent our findings on (1) formation mechanism, bioactivities, quantitative determination of cholesterol ozonolysis product, secosterol as possible biomarker for lifestyle-related disease, and (2) chemical biology approach for the investigating molecular mechanisms of most promising cancer chemopreventive food factors, isothiocyanate-inducing bioactivities. PMID:26856708

  19. Relatively low temperature synthesis of graphene by radio frequency plasma enhanced chemical vapor deposition

    International Nuclear Information System (INIS)

    We present a simple, low-cost and high-effective method for synthesizing high-quality, large-area graphene using radio frequency plasma enhanced chemical vapor deposition (RF-PECVD) on SiO2/Si substrate covered with Ni thin film at relatively low temperatures (650 deg. C). During deposition, the trace amount of carbon (CH4 gas flow rate of 2 sccm) is introduced into PECVD chamber and the deposition time is only 30 s, in which the carbon atoms diffuse into the Ni film and then segregate on its surface, forming single-layer or few-layer graphene. After deposition, Ni is removed by wet etching, and the obtained single continuous graphene film can easily be transferred to other substrates. This investigation provides a large-area, low temperature and low-cost synthesis method for graphene as a practical electronic material.

  20. Modeling the Relations Between Flow Regime Components, Species Traits, and Spawning Success of Fishes in Warmwater Streams

    Science.gov (United States)

    Craven, Scott W.; Peterson, James T.; Freeman, Mary C.; Kwak, Thomas J.; Irwin, Elise

    2010-08-01

    Modifications to stream hydrologic regimes can have a profound influence on the dynamics of their fish populations. Using hierarchical linear models, we examined the relations between flow regime and young-of-year fish density using fish sampling and discharge data from three different warmwater streams in Illinois, Alabama, and Georgia. We used an information theoretic approach to evaluate the relative support for models describing hypothesized influences of five flow regime components representing: short-term high and low flows; short-term flow stability; and long-term mean flows and flow stability on fish reproductive success during fish spawning and rearing periods. We also evaluated the influence of ten fish species traits on fish reproductive success. Species traits included spawning duration, reproductive strategy, egg incubation rate, swimming locomotion morphology, general habitat preference, and food habits. Model selection results indicated that young-of-year fish density was positively related to short-term high flows during the spawning period and negatively related to flow variability during the rearing period. However, the effect of the flow regime components varied substantially among species, but was related to species traits. The effect of short-term high flows on the reproductive success was lower for species that broadcast their eggs during spawning. Species with cruiser swimming locomotion morphologies (e.g., Micropterus) also were more vulnerable to variable flows during the rearing period. Our models provide insight into the conditions and timing of flows that influence the reproductive success of warmwater stream fishes and may guide decisions related to stream regulation and management.

  1. Four-locus phylogeny of Fusarium avenaceum and related species and their species-specific identification based on partial phosphate permease gene sequences.

    Science.gov (United States)

    Stakheev, Alexander A; Khairulina, Dina R; Zavriev, Sergey K

    2016-05-16

    The fungus Fusarium avenaceum and its closest relatives are responsible for contamination of agricultural plants and their products by mycotoxins such as enniatins and moniliformin. Precise identification of mycotoxin producers is necessary for estimation of the accumulation risk of those compounds and for preventing the consumption of highly contaminated products. Nucleic acids amplification-based techniques proved to be the most rapid and reliable approach for pathogen diagnostics and identification. In this study partial phosphate permease gene (PHO) sequences were determined for Fusarium avenaceum (including one isolate identified as F. arthrosporioides), F. tricinctum, F. acuminatum and F. torulosum. Phylogenetic analysis of 40 isolates of those species from different climates and geographical regions of Russia and some neighboring countries based on sequences of PHO, translation elongation factor 1 alpha (TEF1α), beta-tubulin (β-TUB), enniatin synthetase (Esyn1) genes and combined data set demonstrated that the PHO gene possesses the highest rate of variability among them and can be considered as an informative marker for phylogenetic studies of these species. According to the combined data set phylogeny, the isolates of each species formed clusters with a high bootstrap support. Analysis of PHO sequences revealed a high intraspecific variability of F. avenaceum: there were 5 independent clusters on the dendrogram, including one cluster which was closer to F. torulosum than to other F. avenaceum isolates. Variable sites in PHO sequences have been used for the design of species-specific primers and a fluorescent hydrolysis probe. The specificity of the assay was shown for DNA samples extracted from 68 isolates of 23 Fusarium species. Quantitative PCR approach was applied to estimate the contamination rate of 17 naturally infected oat and barley samples, previously characterized by microbiological procedures. PMID:26974249

  2. Chemical response of Picea glehnii seed-epiphytic Penicillium species to Pythium vexans under in vitro competitive conditions for mycelial growth.

    Science.gov (United States)

    Yamaji, Keiko; Hashidoko, Yasuyuki; Fukushi, Yukiharu; Tahara, Satoshi

    2005-04-01

    The potential protection of Picea glehnii seedlings from damping-off by seed-epiphytic Penicillium species was investigated. We studied the chemical response of seed-epiphytic Penicillium species (Pen. cyaneum, Pen. damascenum, and Pen. implicatum) to Pythium vexans, a damping-off fungus, in vitro. Penicillium species were cultured singly or cocultured with Pyt. vexans for 14 or 18 d, and mycelial growth, pH of culture filtrate, antifungal activity of the culture filtrate against Pyt. vexans, and the amount of antifungal compound produced by each Penicillium species, were examined. The filtrate of both the single culture of Penicillium and the coculture of Penicillium and Pyt. vexans showed antifungal activity against Pyt. vexans. In a coculture with Pyt. vexans, Pen. cyaneum produced an antifungal compound (patulin) as in the single culture. Pen. damascenum cocultured with Pyt. vexans produced an antifungal compound (citrinin), as it did in the single culture and in larger amounts on day 10. Pen. implicatum produced two antifungal compounds, frequentin and palitantin, and the ratio of frequentin (with higher antifungal activity than palitantin) to palitantin was higher in the coculture with Pyt. vexans than in the single culture. Our results indicate that these Penicillium species have the ability to produce antifungal compounds and to keep anti-fungal activity under competitive condition with Pyt. vexans. The chemical response of these Penicillium species to Pyt. vexans may contribute to protect P. glehnii seedlings from damage by Pyt. vexans. PMID:16124252

  3. New species of Diabrotica Chevrolat (Coleoptera: Chrysomelidae: Galerucinae and a key to Diabrotica and related genera: results of a synopsis of North and Central American Diabrotica species

    Directory of Open Access Journals (Sweden)

    Alexander Derunkov

    2015-02-01

    Full Text Available The following 18 new species of Diabrotica are described and illustrated as a result of the synopsis of North and Central American species: D. barclayi sp. nov., Guatemala; D. caveyi sp. nov., Costa Rica; D. costaricensis sp. nov., Costa Rica; D. dmitryogloblini sp. nov., Mexico; D. duckworthorum sp. nov., Honduras; D. hartjei sp. nov., Panama; D. josephbalyi sp. nov., Costa Rica; D. lawrencei sp. nov., Mexico; D. mantillerii sp. nov., Panama; D. martinjacobyi sp. nov., Honduras; D. mitteri sp. nov., Panama; D. perkinsi sp. nov., Guatemala; D. redfordae sp. nov., Costa Rica; D. reysmithi sp. nov., Costa Rica; D. salvadorensis sp. nov., El Salvador; D. sel sp. nov., Panama; D. spangleri sp. nov., Costa Rica; D. waltersi sp. nov., Panama. In addition, a key to separate Diabrotica from related genera is presented.

  4. In vitro metabolism of the mycotoxin enniatin B in different species and cytochrome p450 enzyme phenotyping by chemical inhibitors.

    Science.gov (United States)

    Fæste, Christiane K; Ivanova, Lada; Uhlig, Silvio

    2011-09-01

    Enniatins are cyclic hexapeptidic mycotoxins produced by fungi growing on field grains, especially in wet climates. They show considerable resistance to food and feed processing technologies and might cause intoxication of humans and animals. Enniatins are also under exploration as anticancer drugs. The observed difference of in vitro and in vivo toxicities suggests low absorption or fast elimination of the enniatins after oral uptake. In the study presented here, in vitro metabolism studies of enniatin B were performed using rat, dog, and human liver microsomes under conditions of linear kinetics to estimate the respective elimination rates. Furthermore, cytochrome P450 reaction phenotyping with chemical inhibitors selective for human enzymes was carried out. Twelve metabolites were separated and characterized by multiple high-performance liquid chromatographic/mass spectrometric analyses as products of oxidation and demethylation reactions. Biotransformation rates and metabolite patterns varied considerably in the three species. The intrinsic clearances determined in assays with rat, dog, and human liver microsomes were 1.16, 8.23, and 1.13 l/(h · kg), respectively. The predicted enniatin B in vivo blood clearances were 1.57 l/(h · kg) in rats, 1.67 l/(h · kg) in dogs, and 0.63 l/(h · kg) in humans. CYP3A4 was important for enniatin B metabolism in human microsomes as shown by 80% inhibition and impaired metabolite formation in the presence of troleandomycin. CYP1A2 and CYP2C19 were additionally involved. Preliminary results showed that CYP3A and CYP1A might also be relevant in rats and dogs. The extensive hepatic metabolism could explain the reduced in vivo potential of enniatin B. PMID:21622627

  5. Chemical Analysis and Biological Activity of the Essential Oils of Two Valerianaceous Species from China: Nardostachys chinensis and Valeriana officinalis

    Directory of Open Access Journals (Sweden)

    Jianglin Zhao

    2010-09-01

    Full Text Available In order to investigate essential oils with biological activity from local wild plants, two valerianaceous species, Nardostachys chinensis and Valeriana officinalis, were screened for their antimicrobial and antioxidant activity. The essential oils were obtained from the roots and rhizomes of the two plants by hydro-distillation, and were analyzed for their chemical composition by gas chromatography (GC and gas chromatography-mass spectrometry (GC-MS. Calarene (25.31%, aristolone (13.35%, α-selinene (7.32% and β-maaliene (6.70% were the major compounds of the 23 identified components which accounted for 92.76% of the total oil of N. chinensis. Patchoulol (16.75%, α-pinene (14.81%, and β-humulene (8.19% were the major compounds among the 20 identified components, which accounted for 88.11% of the total oil of V. officinalis. Both oils were rich in sesquiterpene hydrocarbons as well as their oxygenated derivatives. Essential oils were shown to have broad spectrum antibacterial activity with MIC values that ranged from 62.5 μg/mL to 400 μg/mL, and IC50 values from 36.93 μg/mL to 374.72 μg/mL. The oils were also shown to have moderate antifungal activity to Candida albicans growth as well as inhibition of spore germination of Magnaporthe oryzae. Two essential oils were assessed by 1,1-diphenyl-2-picrylhydrazyl (DPPH free radical scavenging, β-carotene bleaching and ferrozine-ferrous ions assays, respectively, to show moderate antioxidant activity. Results suggest that the isolated essential oils could be used for future development of antimicrobial and antioxidant agents.

  6. Influence of tree species on the herbaceous understory and soil chemical characteristics in a silvopastoral system in semi-arid northeastern Brazil

    Directory of Open Access Journals (Sweden)

    R. S. C. Menezes

    1999-12-01

    Full Text Available Studies from some semi-arid regions of the world have shown the beneficial effect of trees in silvopastoral systems, by promoting the formation of resource islands and increasing the sustainability of the system. No data are available in this respect for tree species of common occurrence in semi-arid Northeastern Brazil. In the present study, conducted in the summer of 1996, three tree species (Zyziphus joazeiro, Spondias tuberosa and Prosopis juliflora: found within Cenchrus ciliaris pastures were selected to evaluate differences on herbaceous understory and soil chemical characteristics between samples taken under the tree canopy and in open grass areas. Transects extending from the tree trunk to open grass areas were established, and soil (0-15 cm and herbaceous understory (standing live biomass in 1 m² plots samples were taken at 0, 25, 50, 100, 150 and 200% of the average canopy radius (average radius was 6.6 ± 0.5, 4.5 ± 0.5, and 5.3 ± 0.8 m for Z. joazeiro, P. juliflora, and S. tuberosa , respectively. Higher levels of soil C, N, P, Ca, Mg, K, and Na were found under the canopies of Z. joazeiro and P. juliflora: trees, as compared to open grass areas. Only soil Mg organic P were higher under the canopies of S. tuberosa trees, as compared to open grass areas. Herbaceous understory biomass was significantly lower under the canopy of S. tuberosa and P. juliflora trees (107 and 96 g m-2, respectively relatively to open grass areas (145 and 194 g m-2. No herbaceous biomass differences were found between Z. joazeiro canopies and open grass areas (107 and 87 g m-2, respectively. Among the three tree species studied, Z. joazeiro was the one that presented the greatest potential for use in a silvopastoral system at the study site, since it had a larger nutrient stock in the soil without negatively affecting herbaceous understory biomass, relatively to open grass areas.

  7. Relations between Environmentally Disturbing Establishments and three Invertebrate Indicator Species in the Baltic Sea

    OpenAIRE

    Joelsson, Anna-Emilia

    2013-01-01

    In order to improve the knowledge about polluted areas in Sweden, Naturvårdsverket has compiled a list of all establishments and other anthropological activities, so called MIFOobjects, which emit harmful chemicals. Those activities which are placed on land might, depending on factors such as closeness to the sea, water solubility, degradability and toxicity of the chemicals have an impact on the biota in the Baltic Sea. In this study, spatial and statistical methods were used to explore pote...

  8. Phylogenetic Study of Mangifera laurina and its Related Species Using cpDNA trnL-F Spacer Markers

    Directory of Open Access Journals (Sweden)

    FITMAWATI

    2010-03-01

    Full Text Available Phylogenetic study of cpDNA intergenic spacer trnL-F of Mangifera laurina and their related species within the genus Mangifera in Indonesia was conducted using Rutaceae as the outgroup. This study was to reconstruct phylogenetic relationships and to understand infraspecific relationships within Mangifera based on cpDNA trnL-F intergenic spacer sequences. The results showed that Mangifera sp. Hiku (mangga hiku as the basic cultivar in the clade, and it supported the monophyletic group in Mangifera. And phylogenetic construction indicated that Mangifera sp. Hiku was the progenitor of M. laurina and their related species.

  9. New Microsatellite Markers for Tricyrtis macrantha (Convallariaceae and Cross-Amplification in Closely Related Species

    Directory of Open Access Journals (Sweden)

    Noriko Ohki

    2013-05-01

    Full Text Available Premise of the study: Microsatellite markers were characterized in Tricyrtis macrantha (sect. Brachycyrtis, Convallariaceae, a vulnerable species endemic to Japan, to investigate its genetic diversity and population structure. Methods and Results: Eleven microsatellite markers were developed. The number of alleles per locus ranged from one to seven, and genetic diversity per locus ranged from 0.142 to 0.812. Four markers were successfully amplified in other species of sect. Brachycyrtis (T. ishiiana, T. ishiiana var. surugensis, and T. macranthopsis. Conclusions: The microsatellite markers can be used to investigate the genetic diversity and population structure of the vulnerable and endangered species of Tricyrtis sect. Brachycyrtis, to aid in the development of conservation strategies for each species.

  10. Area-wide integrated pest control operation in Thailand: Two interacting closely related species, Bactrocera dorsalis sensu stricto and Bactrocera correcta, with potential of species complexity

    International Nuclear Information System (INIS)

    Full text: Since 1987, we have set up a pilot project initially for the control of the Oriental fruit fly (OFF), Bactrocera dorsalis (Handel), and recently also for control of the Guava fruit fly (GFF), Bactrocera correcta. In doing so, we integrated the SIT with other monitoring and control methods in the Rajburi province (south) as well as recently in Phichit province (north). These two area-wide control programmes are operated with different management schemes integrating various stakeholders such as crop growers, local field operators, producers of the sterile insects, politicians, activists, reporters, exporters, scientific experts, and researchers from academies and research institutes. Regular feed back information systems of the field monitoring have been set-up with geographical positioning system (GPS) with the support of IAEA. Thus, most trapping sites and infested fruits collection sites from both the control areas have been geo-referenced and have become valuable resources for the population dynamic studies regarding the effectiveness of the area-wide control programme. Recent research is investigating the impact of the presence of two different but conceivably interacting closely related species, B. dorsalis and B. correcta, which are sympatric polyphagous species with highly overlapping commodity host ranges. However, their degree of host preferences is somewhat different. Crop growers and area-wide control experts require that our effective area-wide control programme needs to be tailored so that population suppression for both species is achieved. Besides, there were several (unpublished) reports indirectly suggesting mating interactions between the two species. This presentation reports initial analysis of mating tests between these two fruit fly species, comparison of their natural history, and the demographic data from our area-wide control areas and from general agricultural areas. We also addressed the use of established molecular genetic

  11. THE SPECIES PROBLEM AND ITS LOGIC: Inescapable Ambiguity and Framework-relativity

    OpenAIRE

    Bartlett, Steven James

    2015-01-01

    For more than fifty years, taxonomists have proposed numerous alternative definitions of species while they searched for a unique, comprehensive, and persuasive definition. This monograph shows that these efforts have been unnecessary, and indeed have provably been a pursuit of a will o' the wisp because they have failed to recognize the theoretical impossibility of what they seek to accomplish. A clear and rigorous understanding of the logic underlying species definition leads both to a reco...

  12. Hybridization among distantly related species: Examples from the polyploid genus Curcuma (Zingiberaceae).

    Science.gov (United States)

    Záveská, Eliška; Fér, Tomáš; Šída, Otakar; Marhold, Karol; Leong-Škorničková, Jana

    2016-07-01

    Discerning relationships among species evolved by reticulate and/or polyploid evolution is not an easy task, although it is widely discussed. The economically important genus Curcuma (ca. 120 spp.; Zingiberaceae), broadly distributed in tropical SE Asia, is a particularly interesting example of a group of palaeopolyploid origin whose evolution is driven mainly by hybridization and polyploidization. Although a phylogeny and a new infrageneric classification of Curcuma, based on commonly used molecular markers (ITS and cpDNA), have recently been proposed, significant evolutionary questions remain unresolved. We applied a multilocus approach and a combination of modern analytical methods to this genus to distinguish causes of gene tree incongruence and to identify hybrids and their parental species. Five independent regions of nuclear DNA (DCS, GAPDH, GLOBOSA3, LEAFY, ITS) and four non-coding cpDNA regions (trnL-trnF, trnT-trnL, psbA-trnH and matK), analysed as a single locus, were employed to construct a species tree and hybrid species trees using (*)BEAST and STEM-hy. Detection of hybridogenous species in the dataset was also conducted using the posterior predictive checking approach as implemented in JML. The resulting species tree outlines the relationships among major evolutionary lineages within Curcuma, which were previously unresolved or which conflicted depending upon whether they were based on ITS or cpDNA markers. Moreover, by using the additional markers in tests of plausible topologies of hybrid species trees for C. vamana, C. candida, C. roscoeana and C. myanmarensis suggested by previous molecular and morphological evidence, we found strong evidence that all the species except C. candida are of subgeneric hybrid origin. PMID:27090448

  13. The effect of crop sequences on soil microbial, chemical and physical indicators and its relationship with soybean sudden death syndrome (complex of Fusarium species)

    Energy Technology Data Exchange (ETDEWEB)

    Perez-Brandan, C.; Arzeno, J. L.; Huidobro, J.; Conforto, C.; Grumberg, B.; Hilton, S.; Bending, G. D.; Meriles, J. M.; Vargas-Gil, S.

    2014-06-01

    The effect of crop sequences on soil quality indicators and its relationship with sudden death syndrome (SDS, a complex of Fusarium species) was evaluated by physical, chemical, biochemical and molecular techniques. Regarding physical aspects, soybean/maize and maize mono culture exhibited the highest stable aggregate level, with values 41% and 43% higher than in soybean mono culture, respectively, and 133% higher than in bean mono culture. Bulk density (BD) was higher in soybean monoculture, being 4% higher than in bean monoculture. The chemical parameters organic matter, total N, P, K, Mg, Ca, and water holding capacity also indicated that soybean/maize and maize monoculture improved soil quality. Fungal and bacterial community fingerprints generated using Terminal Restriction Fragment Length Polymorphism analysis of intergenic transcribed spacer regions of rRNA genes and 16S rRNA genes, respectively, indicated a clear separation between the rotations. Fatty acid profiles evaluated by FAME showed that bean monoculture had higher biomass of Gram (+) bacteria and stress indicators than maize monoculture, while the soybean/maize system showed a significant increase in total microbial biomass (total FAMEs content) in comparison with soybean and bean monoculture. The incidence of SDS (Fusarium crassistipitatum) was markedly higher (15%) under soybean monoculture than when soybean was grown in rotation with maize. In the present work, soil microbial properties were improved under soybean/maize relative to continuous soybean. The improvement of soil health was one of the main causes for the reduction of disease pressure and crop yield improvement due to the benefits that crop rotation produces for soil quality. (Author)

  14. The effect of crop sequences on soil microbial, chemical and physical indicators and its relationship with soybean sudden death syndrome (complex of Fusarium species

    Directory of Open Access Journals (Sweden)

    Carolina Perez-Brandan

    2013-12-01

    Full Text Available The effect of crop sequences on soil quality indicators and its relationship with sudden death syndrome (SDS, a complex of Fusarium species was evaluated by physical, chemical, biochemical and molecular techniques. Regarding physical aspects, soybean/maize and maize monoculture exhibited the highest stable aggregate level, with values 41% and 43% higher than in soybean monoculture, respectively, and 133% higher than in bean monoculture. Bulk density (BD was higher in soybean monoculture, being 4% higher than in bean monoculture. The chemical parameters organic matter, total N, P, K, Mg, Ca, and water holding capacity also indicated that soybean/maize and maize monoculture improved soil quality. Fungal and bacterial community fingerprints generated using Terminal Restriction Fragment Length Polymorphism analysis of intergenic transcribed spacer regions of rRNA genes and 16S rRNA genes, respectively, indicated a clear separation between the rotations. Fatty acid profiles evaluated by FAME showed that bean monoculture had higher biomass of Gram (+ bacteria and stress indicators than maize monoculture, while the soybean/maize system showed a significant increase in total microbial biomass (total FAMEs content in comparison with soybean and bean monoculture. The incidence of SDS (Fusarium crassistipitatum was markedly higher (15% under soybean monoculture than when soybean was grown in rotation with maize. In the present work, soil microbial properties were improved under soybean/maize relative to continuous soybean. The improvement of soil health was one of the main causes for the reduction of disease pressure and crop yield improvement due to the benefits that crop rotation produces for soil quality.

  15. Cordyceps s.l. (Ascomycetes) Species Used as Medicinal Mushrooms are Closely Related with Higher Ability to Produce Cordycepin.

    Science.gov (United States)

    Kuo, Hsiao-Che; Huang, I-Ching; Chen, Tzong-Yueh

    2015-01-01

    Cordyceps s.l. (sensu lato) species have been used as herbal medicines; one of their main constituents is cordycepin. As genome sequencing techniques have become more cost-effective and more popular, more entomogenous fungal genomes have been sequenced and published. Here, we constructed a phylogenetic tree based on 18S rRNA sequences from Cordyceps species and analyzed the copy number of the key enzymes involved in biosynthesis of cordycepin from related fungal genomes that have been published. The sequences of the 18S rRNA gene were examined, and seven single nucleotides were found that could represent the evolutionary history of Cordyceps s.l. and which perfectly fit the phylogenetic tree. Their evolution was influenced mainly by host factors, rather than geographical location. The Cordyceps s.l. species that are used as herbal medicines are closely related in the phylogenetic tree. The major species for Chinese pharmaceutical markets, such as C. militaris and C. sinensis, have higher copy numbers of 5'-nucleotidase and adenylate kinase, and ribonucleotide reductases (RNRs), respectively. Moreover, absence of an RNR inhibitor may cause cordycepin accumulation. Presence of an RNR inhibitor may lead to lower cordycepin levels in fungal species in which no medicinal applications have been described. Cordycepin is not only an important secondary metabolite that is used as an herbal medicine, but it also has significance for understanding the evolution of these entomogenous species. PMID:26853963

  16. LEAF ANATOMICAL VARIATION IN RELATION TO STRESS TOLERANCE AMONG SOME WOODY SPECIES ON THE ACCRA PLAINS OF GHANA

    Directory of Open Access Journals (Sweden)

    DZOMEKU BELOVED MENSAH

    2012-12-01

    Full Text Available Leaf anatomical study was conducted on some woody species on the Accra Plains of Ghana. Leaf epidermal strips and transverse sections were mounted in Canada balsam and studied. The anatomical studies revealed numerous stomata on the lower epidermis of Azadirachta indica. The anatomical studies revealed the presence of thick cuticles, double-layered palisade mesophyll in most species and the presence of epidermal hairs in some species. Ficus capensis showed the presence of cystolith in the lower epidermis whereas Zanthoxylum zanthoxyloides showed the presence of mucilage gland in the upper epidermis. Epidermal cell of Chromolaena odorata are very large with undulating cell walls. The species studied had various adaptive anatomical features. The stomatal frequency of Azadirachta indica was very high. With the exception of Chromolaena odorata the stomatal frequencies of the species were relatively high. The stomatal dimensions showed that most of the species maintained constant stomatal length during the study period except Griffonia simplicifolia that increased the stomatal width during the afternoon. Unlike Morinda lucida, Griffonia simplicifolia and Chromolaena odorata, that showed reduction in the breadth of stomata, the other species maintained constant stomatal width.

  17. M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species

    Directory of Open Access Journals (Sweden)

    Messeguer Xavier

    2006-10-01

    Full Text Available Abstract Background Due to recent advances in whole genome shotgun sequencing and assembly technologies, the financial cost of decoding an organism's DNA has been drastically reduced, resulting in a recent explosion of genomic sequencing projects. This increase in related genomic data will allow for in depth studies of evolution in closely related species through multiple whole genome comparisons. Results To facilitate such comparisons, we present an interactive multiple genome comparison and alignment tool, M-GCAT, that can efficiently construct multiple genome comparison frameworks in closely related species. M-GCAT is able to compare and identify highly conserved regions in up to 20 closely related bacterial species in minutes on a standard computer, and as many as 90 (containing 75 cloned genomes from a set of 15 published enterobacterial genomes in an hour. M-GCAT also incorporates a novel comparative genomics data visualization interface allowing the user to globally and locally examine and inspect the conserved regions and gene annotations. Conclusion M-GCAT is an interactive comparative genomics tool well suited for quickly generating multiple genome comparisons frameworks and alignments among closely related species. M-GCAT is freely available for download for academic and non-commercial use at: http://alggen.lsi.upc.es/recerca/align/mgcat/intro-mgcat.html.

  18. A review of reaction rates and thermodynamic and transport properties for an 11-species air model for chemical and thermal nonequilibrium calculations to 30000 K

    Science.gov (United States)

    Gupta, Roop N.; Yos, Jerrold M.; Thompson, Richard A.; Lee, Kam-Pui

    1990-01-01

    Reaction rate coefficients and thermodynamic and transport properties are reviewed and supplemented for the 11-species air model which can be used for analyzing flows in chemical and thermal nonequilibrium up to temperatures of 3000 K. Such flows will likely occur around currently planned and future hypersonic vehicles. Guidelines for determining the state of the surrounding environment are provided. Curve fits are given for the various species properties for their efficient computation in flowfield codes. Approximate and more exact formulas are provided for computing the properties of partially ionized air mixtures in a high energy environment. Limitations of the approximate mixing laws are discussed for a mixture of ionized species. An electron number-density correction for the transport properties of the charged species is obtained. This correction has been generally ignored in the literature.

  19. Screening of Plantago species for physiological parameters in relation to seed yield

    Directory of Open Access Journals (Sweden)

    Apexa Patel and R. Saravanan

    2010-12-01

    Full Text Available Isabgol is a major export oriented medicinal crop of India. The genetic variability available in this crop is limited owing to the narrow gene poolexisting in our country. The physiological and growth characteristics of selected 7 species of Plantago were studied at DMAPR, Boriavi toinvestigate the relationship with the seed yield. Among the species studied, the lowest SLA (specific leaf area of 0.15 cm2 g-1 was noticed in P.lanceolate. SLW (specific leaf weight was recorded the lowest in P. coronopus (4.82 g cm-2 which was at par with P. indica. LAI also variedsignificantly among the species studied with the lowest being in P. arenaria (2.16 and P. serraria had the highest LAI (3. 87 among the speciesstudied. P. ovata produced the highest biomass (21.49 g plant-1, while P. psyllium had comparable DM, however produced low seed yield (1.09 gplant-1 with HI of 0.061. P. lanceolate and P. ovata showed higher thousand seed weight among the species. P. indica (29.99 >mol CO2 m-2s-1had the highest net photosynthetic rate among the species. Pn values for all the studied species were negatively correlated with their mean area ofindividual leaf (R2 0.366 and also with mean dry weight of leaves (R2 0.366. However, total biomass of plant was positively correlated withseed yield (R2 0.366. Thousand seed weight of studied species were significantly and positively correlated with the seed yield per plant (R20.771. In conclusion, leaf characteristics like high SLA, Pn , gs and TSW will positively contribute to the seed yield. These characters may beconsidered in the breeding programmes for the yield improvement of isabgol.

  20. Photobiont Relationships and Phylogenetic History of Dermatocarpon luridum var. luridum and Related Dermatocarpon Species

    Directory of Open Access Journals (Sweden)

    Kyle M. Fontaine

    2012-10-01

    Full Text Available Members of the genus Dermatocarpon are widespread throughout the Northern Hemisphere along the edge of lakes, rivers and streams, and are subject to abiotic conditions reflecting both aquatic and terrestrial environments. Little is known about the evolutionary relationships within the genus and between continents. Investigation of the photobiont(s associated with sub-aquatic and terrestrial Dermatocarpon species may reveal habitat requirements of the photobiont and the ability for fungal species to share the same photobiont species under different habitat conditions. The focus of our study was to determine the relationship between Canadian and Austrian Dermatocarpon luridum var. luridum along with three additional sub-aquatic Dermatocarpon species, and to determine the species of photobionts that associate with D. luridum var. luridum. Culture experiments were performed to identify the photobionts. In addition, the question of the algal sharing potential regarding different species of Dermatocarpon was addressed. Specimens were collected from four lakes in northwestern Manitoba, Canada and three streams in Austria. Three Canadian and four Austrian thalli of D. luridum var. luridum were selected for algal culturing. The nuclear Internal Transcribed Spacer (ITS rDNA gene of the fungal partner along with the algal ITS rDNA gene was sequenced to confirm the identity of the lichen/photobiont and afterwards the same data sets were used in phylogenetic analyses to assess algal sharing. The green algal photobiont was identified as Diplosphaera chodatii (Trebouxiophyceae. The phylogenetic analyses of Canadian and Austrian D. luridum var. luridum revealed that ITS sequences are identical despite the vast geographic distance. Phylogenetic placement of D. luridum var. decipiens and D. arnoldianum suggested that a re-examination of the species status might be necessary. This study concluded that additional photobiont culture experiments should be conducted