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Sample records for charged peptide ions

  1. Fragmentation of phosphorylated and singly charged peptide ions via interaction with metastable atoms.

    Science.gov (United States)

    Berkout, Vadym D; Doroshenko, Vladimir M

    2008-12-01

    Fragmentation of phosphorylated peptide ions via interaction with electronically excited metastable argon atoms was studied in a linear trap - time-of-flight mass spectrometer. Doubly charged ions of phosphorylated peptides from an Enolase digest were produced by electrospray ionization and subjected to a metastable atom beam in the linear trap. The metastable argon atoms were generated using a glow-discharge source. An intensive series of c- and z- ions were observed in all cases, with the phosphorylation group intact. The formation of molecular radical cations with reduced charge indicated that an electron transfer from a highly excited metastable state of argon to the peptide cation occurred. Additionally, singly charged Bradykinin, Substance P and Fibrinopeptide A molecular ions were fragmented via interaction with electronically excited metastable helium atoms. The fragmentation mechanism was different in this case and involved Penning ionization.

  2. Generation of highly charged peptide and protein ions by atmospheric pressure matrix-assisted infrared laser desorption/ionization ion trap mass spectrometry.

    Science.gov (United States)

    König, Simone; Kollas, Oliver; Dreisewerd, Klaus

    2007-07-15

    We show that highly charged ions can be generated if a pulsed infrared laser and a glycerol matrix are employed for atmospheric pressure matrix-assisted laser desorption/ionization mass spectrometry with a quadrupole ion trap. Already for small peptides like bradykinin, doubly protonated ions form the most abundant analyte signal in the mass spectra. The center of the charge-state distribution increases with the size of the analyte. For example, insulin is detected with a most abundant ion signal corresponding to a charge state of four, whereas for cytochrome c, the 10 times protonated ion species produces the most intense signal. Myoglobin is observed with up to 13 charges. The high m/z ratios allow us to use the Paul trap for the detection of MALDI-generated protein ions that are, owing to their high molecular weight, not amenable in their singly protonated charge state. Formation of multiple charges critically depends on the addition of diluted acid to the analyte-matrix solution. Tandem mass spectra generated by collision-induced dissociation of doubly charged peptides are also presented. The findings allow speculations about the involvement of electrospray ionization processes in these MALDI experiments.

  3. Peptide sequencing and characterization of post-translational modifications by enhanced ion-charging and liquid chromatography electron-transfer dissociation tandem mass spectrometry

    DEFF Research Database (Denmark)

    Kjeldsen, Frank; Giessing, Anders; Ingrell, Christian R

    2007-01-01

    We have tested the effect of m-nitrobenzyl alcohol (m-NBA) as a method to increase the average charge state of protonated gas-phase molecular ions generated by ESI from tryptic peptides and phosphopeptides. Various concentrations of m-NBA were added to the mobile phases of a liquid chromatography...

  4. The 4-pyridylmethyl ester as a protecting group for glutamic and aspartic acids: 'flipping' peptide charge states for characterization by positive ion mode ESI-MS.

    Science.gov (United States)

    Garapati, Sriramya; Burns, Colin S

    2014-03-01

    Use of the 4-pyridylmethyl ester group for side-chain protection of glutamic acid residues in solid-phase peptide synthesis enables switching of the charge state of a peptide from negative to positive, thus making detection by positive ion mode ESI-MS possible. The pyridylmethyl ester moiety is readily removed from peptides in high yield by hydrogenation. Combining the 4-pyridylmethyl ester protecting group with benzyl ester protection reduces the number of the former needed to produce a net positive charge and allows for purification by RP HPLC. This protecting group is useful in the synthesis of highly acidic peptide sequences, which are often beset by problems with purification by standard RP HPLC and characterization by ESI-MS.

  5. Peptide fragmentation by keV ion-induced dissociation

    NARCIS (Netherlands)

    Bari, S.; Hoekstra, R.A.; Schlathölter, T.A.

    2010-01-01

    We have studied multiple ionization and dissociation of a trapped protonated peptide (leucine enkephalin) as induced by keV singly and doubly charged ions (H(+), He(+,) (2+)) to demonstrate the potential of keV ions as a future tool for peptide identification. In contrast to conventional excitation

  6. Charge Breeding of Radioactive Ions

    CERN Document Server

    Wenander, F J C

    2013-01-01

    Charge breeding is a technique to increase the charge state of ions, in many cases radioactive ions. The singly charged radioactive ions, produced in an isotope separator on-line facility, and extracted with a low kinetic energy of some tens of keV, are injected into a charge breeder, where the charge state is increased to Q. The transformed ions are either directed towards a dedicated experiment requiring highly charged ions, or post-accelerated to higher beam energies. In this paper the physics processes involved in the production of highly charged ions will be introduced, and the injection and extraction beam parameters of the charge breeder defined. A description of the three main charge-breeding methods is given, namely: electron stripping in gas jet or foil; external ion injection into an electron-beam ion source/trap (EBIS/T); and external ion injection into an electron cyclotron resonance ion source (ECRIS). In addition, some preparatory devices for charge breeding and practical beam delivery aspects ...

  7. Gold Ion-Angiotensin Peptide Interaction by Mass Spectrometry

    Science.gov (United States)

    Lee, Jenny; Jayathilaka, Lasanthi P.; Gupta, Shalini; Huang, Jin-Sheng; Lee, Bao-Shiang

    2012-05-01

    Stimulated by the interest in developing gold compounds for treating cancer, gold ion-angiotensin peptide interactions are investigated by mass spectrometry. Under the experimental conditions used, the majority of gold ion-angiotensin peptide complexes contain gold in the oxidation states I and III. Both ESI-MS and MALDI-TOF MS detect singly/multiply charged ions for mononuclear/multinuclear gold-attached peptides, which are represented as [peptide + a Au(I) + b Au(III) + (e - a -3b) H]e+, where a,b ≥ 0 and e is charge. ESI-MS data shows singly/multiply charged ions of Au(I)-peptide and Au(III)-peptide complexes. This study reveals that MALDI-TOF MS mainly detects singly charged Au(I)-peptide complexes, presumably due to the ionization process. The electrons in the MALDI plume seem to efficiently reduce Au(III) to Au(I). MALDI also tends to enhance the higher polymeric forms of gold-peptide complexes regardless of the laser power used. Collision-induced dissociation experiments of the mononuclear and dinuclear gold-attached peptide ions for angiotensin peptides show that the gold ion (a soft acid) binding sites are in the vicinity of Cys (a soft ligand), His (a major anchor of peptide for metal ion chelation), and the basic residue Arg. Data also suggests that the abundance of gold-attached peptides increases with higher gold concentration until saturation, after which an increase in gold ion concentration leads to the aggregation and/or precipitation of gold-bound peptides.

  8. Laserspray ionization, a new atmospheric pressure MALDI method for producing highly charged gas-phase ions of peptides and proteins directly from solid solutions.

    Science.gov (United States)

    Trimpin, Sarah; Inutan, Ellen D; Herath, Thushani N; McEwen, Charles N

    2010-02-01

    The first example of a matrix-assisted laser desorption/ionization (MALDI) process producing multiply charged mass spectra nearly identical to those observed with electrospray ionization (ESI) is presented. MALDI is noted for its ability to produce singly charged ions, but in the experiments described here multiply charged ions are produced by laser ablation of analyte incorporated into a common MALDI matrix, 2,5-dihydroxybenzoic acid, using standard solvent-based sample preparation protocols. Laser ablation is known to produce matrix clusters in MALDI provided a threshold energy is achieved. We propose that these clusters (liquid droplets) are highly charged, and under conditions that produce sufficient matrix evaporation, ions are field-evaporated from the droplets similarly to ESI. Because of the multiple charging, advanced mass spectrometers with limited mass-to-charge range can be used for protein characterization. Thus, using an Orbitrap mass spectrometer, low femtomole quantities of proteins produce full-range mass spectra at 100,000 mass resolution with <5-ppm mass accuracy and with 1-s acquisition. Furthermore, the first example of protein fragmentation using electron transfer dissociation with MALDI is presented.

  9. Hydration of highly charged ions.

    Science.gov (United States)

    Hofer, Thomas S; Weiss, Alexander K H; Randolf, Bernhard R; Rode, Bernd M

    2011-08-01

    Based on a series of ab initio quantum mechanical charge field molecular dynamics (QMCF MD) simulations, the broad spectrum of structural and dynamical properties of hydrates of trivalent and tetravalent ions is presented, ranging from extreme inertness to immediate hydrolysis. Main group and transition metal ions representative for different parts of the periodic system are treated, as are 2 threefold negatively charged anions. The results show that simple predictions of the properties of the hydrates appear impossible and that an accurate quantum mechanical simulation in cooperation with sophisticated experimental investigations seems the only way to obtain conclusive results.

  10. Matrix assisted ionization: new aromatic and nonaromatic matrix compounds producing multiply charged lipid, peptide, and protein ions in the positive and negative mode observed directly from surfaces.

    Science.gov (United States)

    Li, Jing; Inutan, Ellen D; Wang, Beixi; Lietz, Christopher B; Green, Daniel R; Manly, Cory D; Richards, Alicia L; Marshall, Darrell D; Lingenfelter, Steven; Ren, Yue; Trimpin, Sarah

    2012-10-01

    Matrix assisted inlet ionization (MAII) is a method in which a matrix:analyte mixture produces mass spectra nearly identical to electrospray ionization without the application of a voltage or the use of a laser as is required in laserspray ionization (LSI), a subset of MAII. In MAII, the sample is introduced by, for example, tapping particles of dried matrix:analyte into the inlet of the mass spectrometer and, therefore, permits the study of conditions pertinent to the formation of multiply charged ions without the need of absorption at a laser wavelength. Crucial for the production of highly charged ions are desolvation conditions to remove matrix molecules from charged matrix:analyte clusters. Important factors affecting desolvation include heat, vacuum, collisions with gases and surfaces, and even radio frequency fields. Other parameters affecting multiply charged ion production is sample preparation, including pH and solvent composition. Here, findings from over 100 compounds found to produce multiply charged analyte ions using MAII with the inlet tube set at 450 °C are presented. Of the compounds tested, many have -OH or -NH(2) functionality, but several have neither (e.g., anthracene), nor aromaticity or conjugation. Binary matrices are shown to be applicable for LSI and solvent-free sample preparation can be applied to solubility restricted compounds, and matrix compounds too volatile to allow drying from common solvents. Our findings suggest that the physical properties of the matrix such as its morphology after evaporation of the solvent, its propensity to evaporate/sublime, and its acidity are more important than its structure and functional groups.

  11. Laserspray ionization imaging of multiply charged ions using a commercial vacuum MALDI ion source.

    Science.gov (United States)

    Inutan, Ellen D; Wager-Miller, James; Mackie, Ken; Trimpin, Sarah

    2012-11-06

    This is the first report of imaging mass spectrometry (MS) from multiply charged ions at vacuum. Laserspray ionization (LSI) was recently extended to applications at vacuum producing electrospray ionization-like multiply charged ions directly from surfaces using a commercial intermediate pressure matrix-assisted laser desorption/ionization ion mobility spectrometry (IMS) MS instrument. Here, we developed a strategy to image multiply charged peptide ions. This is achieved by the use of 2-nitrophloroglucinol as matrix for spray deposition onto the tissue section and implementation of "soft" acquisition conditions including lower laser power and ion accelerating voltages similar to electrospray ionization-like conditions. Sufficient ion abundance is generated by the vacuum LSI method to employ IMS separation in imaging multiply charged ions obtained on a commercial mass spectrometer ion source without physical instrument modifications using the laser in the commercially available reflection geometry alignment. IMS gas-phase separation reduces the complexity of the ion signal from the tissue, especially for multiply charged relative to abundant singly charged ions from tissue lipids. We show examples of LSI tissue imaging from charge state +2 of three endogenous peptides consisting of between 1 and 16 amino acid residues from the acetylated N-terminal end of myelin basic protein: mass-to-charge (m/z) 795.81 (+2) molecular weight (MW) 1589.6, m/z 831.35 (+2) MW 1660.7, and m/z 917.40 (+2) MW 1832.8.

  12. Laserspray ionization on a commercial atmospheric pressure-MALDI mass spectrometer ion source: selecting singly or multiply charged ions.

    Science.gov (United States)

    McEwen, Charles N; Larsen, Barbara S; Trimpin, Sarah

    2010-06-15

    Multiply charged ions, similar to those obtained with electrospray ionization, are produced at atmospheric pressure (AP) using standard MALDI conditions of laser fluence and reflective geometry. Further, the charge state can be switched to singly charged ions nearly instantaneously by changing the voltage applied to the MALDI target plate. Under normal AP-MALDI operating conditions in which a voltage is applied to the target plate, primarily singly charged ions are observed, but at or near zero volts, highly charged ions are observed for peptides and proteins. Thus, switching between singly and multiply charged ions requires only manipulation of a single voltage. As in ESI, multiple charging, produced using the AP-MALDI source, allows compounds with molecular weights beyond the mass-to-charge limit of the mass spectrometer to be observed and improves the fragmentation relative to singly charged ions.

  13. Metal Ion Controlled Polymorphism of a Peptide

    DEFF Research Database (Denmark)

    Hemmingsen, Lars Bo Stegeager; Jancso, Attila; Szunyogh, Daniel;

    2011-01-01

    , …) in the peptide, and the ligand and structural preferences of the metal ion (in our studies Zn2+, Cd2+, Hg2+, Cu+/2+). Simultaneously, new species such as metal ion bridged ternary complexes or even oligomers may be formed. In recent previous studies we have observed similar polymorphism of zinc finger model...

  14. Holographic heavy ion collisions with baryon charge

    CERN Document Server

    Casalderrey-Solana, Jorge; van der Schee, Wilke; Triana, Miquel

    2016-01-01

    We numerically simulate collisions of charged shockwaves in Einstein-Maxwell theory in anti-de Sitter space as a toy model of heavy ion collisions with non-zero baryon charge. The stress tensor and the baryon current become well described by charged hydrodynamics at roughly the same time. The effect of the charge density on generic observables is typically no larger than 15\\%. %The rapidity profile of the charge is wider than the profile of the local energy density. We find significant stopping of the baryon charge and compare our results with those in heavy ion collision experiments.

  15. Ion Mobility Spectrometry-Hydrogen Deuterium Exchange Mass Spectrometry of Anions: Part 1. Peptides to Proteins

    Science.gov (United States)

    Donohoe, Gregory C.; Khakinejad, Mahdiar; Valentine, Stephen J.

    2015-04-01

    Ion mobility spectrometry (IMS) coupled with hydrogen deuterium exchange (HDX)-mass spectrometry (MS) has been used to study the conformations of negatively-charged peptide and protein ions. Results are presented for ion conformers of angiotensin 1, a synthetic peptide (SP), bovine insulin, ubiquitin, and equine cytochrome c. In general, the SP ion conformers demonstrate a greater level of HDX efficiency as a greater proportion of the sites undergo HDX. Additionally, these ions exhibit the fastest rates of exchange. Comparatively, the angiotensin 1 ions exhibit a lower rate of exchange and HDX level presumably because of decreased accessibility of exchange sites by charge sites. The latter are likely confined to the peptide termini. Insulin ions show dramatically reduced HDX levels and exchange rates, which can be attributed to decreased conformational flexibility resulting from the disulfide bonds. For the larger ubiquitin and protein ions, increased HDX is observed for larger ions of higher charge state. For ubiquitin, a conformational transition from compact to more elongated species (from lower to higher charge states) is reflected by an increase in HDX levels. These results can be explained by a combination of interior site protection by compact conformers as well as decreased access by charge sites. The elongated cytochrome c ions provide the largest HDX levels where higher values correlate with charge state. These results are consistent with increased exchange site accessibility by additional charge sites. The data from these enhanced IMS-HDX experiments are described in terms of charge site location, conformer rigidity, and interior site protection.

  16. Surface nanostructures by single highly charged ions.

    Science.gov (United States)

    Facsko, S; Heller, R; El-Said, A S; Meissl, W; Aumayr, F

    2009-06-03

    It has recently been demonstrated that the impact of individual, slow but highly charged ions on various surfaces can induce surface modifications with nanometer dimensions. Generally, the size of these surface modifications (blisters, hillocks, craters or pits) increases dramatically with the potential energy of the highly charged ion, while the kinetic energy of the projectile ions seems to be of little importance. This paper presents the currently available experimental evidence and theoretical models and discusses the circumstances and conditions under which nanosized features on different surfaces due to the impact of slow highly charged ions can be produced.

  17. Handbook for highly charged ion spectroscopic research

    CERN Document Server

    Hutton, Roger; Currell, Fred; Martinson, Indrek; Hagmann, Siegbert

    2011-01-01

    Highly charged ions are key research objects in atomic physics. Precision spectroscopy of such ions provides a powerful tool for exploring relativistic and quantum electrodynamics effects. Additionally, the interaction of high-energy heavy-ions with matter is itself a topic of importance in many areas of applied physics, including fusion and plasma physics, accelerator physics, materials science and semiconductor device preparation and behavior. This work provides a complete overview of modern methods of studying highly charged ions. With chapters covering everything from the essential backgro

  18. Spectroscopy with trapped highly charged ions

    Energy Technology Data Exchange (ETDEWEB)

    Beiersdorfer, P

    2008-01-23

    We give an overview of atomic spectroscopy performed on electron beam ion traps at various locations throughout the world. Spectroscopy at these facilities contributes to various areas of science and engineering, including but not limited to basic atomic physics, astrophysics, extreme ultraviolet lithography, and the development of density and temperature diagnostics of fusion plasmas. These contributions are accomplished by generating, for example, spectral surveys, making precise radiative lifetime measurements, accounting for radiative power emitted in a given wavelength band, illucidating isotopic effects, and testing collisional-radiative models. While spectroscopy with electron beam ion traps had originally focused on the x-ray emission from highly charged ions interacting with the electron beam, the operating modes of such devices have expanded to study radiation in almost all wavelength bands from the visible to the hard x-ray region; and at several facilities the ions can be studied even in the absence of an electron beam. Photon emission after charge exchange or laser excitation has been observed, and the work is no longer restricted to highly charged ions. Much of the experimental capabilities are unique to electron beam ion traps, and the work performed with these devices cannot be undertaken elsewhere. However, in other areas the work on electron beam ion traps rivals the spectroscopy performed with conventional ion traps or heavy-ion storage rings. The examples we present highlight many of the capabilities of the existing electron beam ion traps and their contributions to physics.

  19. Charge Transport Phenomena in Peptide Molecular Junctions

    Directory of Open Access Journals (Sweden)

    Alessandra Luchini

    2008-01-01

    Full Text Available Inelastic electron tunneling spectroscopy (IETS is a valuable in situ spectroscopic analysis technique that provides a direct portrait of the electron transport properties of a molecular species. In the past, IETS has been applied to small molecules. Using self-assembled nanoelectronic junctions, IETS was performed for the first time on a large polypeptide protein peptide in the phosphorylated and native form, yielding interpretable spectra. A reproducible 10-fold shift of the I/V characteristics of the peptide was observed upon phosphorylation. Phosphorylation can be utilized as a site-specific modification to alter peptide structure and thereby influence electron transport in peptide molecular junctions. It is envisioned that kinases and phosphatases may be used to create tunable systems for molecular electronics applications, such as biosensors and memory devices.

  20. Experimental recombination rates for highly charged ions

    Energy Technology Data Exchange (ETDEWEB)

    Reinhold Schuch [Dept. of Atomic Physics, Stockholm Univ., Frescativ., Stockholm (Sweden)

    2000-01-01

    Recent studies of recombination between free electrons and highly charged ions using electron coolers of heavy-ion storage rings have produced accurate rate coefficients of interest for plasma modeling and diagnostics. Some surprises were discovered which can lead to revisions of recombination models. With bare ions one finds at low energy a strong and puzzling deviation from radiative recombination theory. Dielectronic recombination with C3+, N4+ show that jj coupling gives essential contributions to the cross section also for light ions. (author)

  1. Production and ion-ion cooling of highly charged ions in electron string ion source.

    Science.gov (United States)

    Donets, D E; Donets, E D; Donets, E E; Salnikov, V V; Shutov, V B; Syresin, E M

    2009-06-01

    The scheme of an internal injection of Au atoms into the working space of the "Krion-2" electron string ion source (ESIS) was applied and tested. In this scheme Au atoms are evaporated from the thin tungsten wire surface in vicinity of the source electron string. Ion beams with charge states up to Au51+ were produced. Ion-ion cooling with use of C and O coolant ions was studied. It allowed increasing of the Au51+ ion yield by a factor of 2. Ions of Kr up to charge state 28+ were also produced in the source. Electron strings were first formed with injection electron energy up to 6 keV. Methods to increase the ESIS ion output are discussed.

  2. Prediction of peptide drift time in ion mobility mass spectrometry from sequence-based features

    KAUST Repository

    Wang, Bing

    2013-05-09

    Background: Ion mobility-mass spectrometry (IMMS), an analytical technique which combines the features of ion mobility spectrometry (IMS) and mass spectrometry (MS), can rapidly separates ions on a millisecond time-scale. IMMS becomes a powerful tool to analyzing complex mixtures, especially for the analysis of peptides in proteomics. The high-throughput nature of this technique provides a challenge for the identification of peptides in complex biological samples. As an important parameter, peptide drift time can be used for enhancing downstream data analysis in IMMS-based proteomics.Results: In this paper, a model is presented based on least square support vectors regression (LS-SVR) method to predict peptide ion drift time in IMMS from the sequence-based features of peptide. Four descriptors were extracted from peptide sequence to represent peptide ions by a 34-component vector. The parameters of LS-SVR were selected by a grid searching strategy, and a 10-fold cross-validation approach was employed for the model training and testing. Our proposed method was tested on three datasets with different charge states. The high prediction performance achieve demonstrate the effectiveness and efficiency of the prediction model.Conclusions: Our proposed LS-SVR model can predict peptide drift time from sequence information in relative high prediction accuracy by a test on a dataset of 595 peptides. This work can enhance the confidence of protein identification by combining with current protein searching techniques. 2013 Wang et al.; licensee BioMed Central Ltd.

  3. Coulomb crystallization of highly charged ions.

    Science.gov (United States)

    Schmöger, L; Versolato, O O; Schwarz, M; Kohnen, M; Windberger, A; Piest, B; Feuchtenbeiner, S; Pedregosa-Gutierrez, J; Leopold, T; Micke, P; Hansen, A K; Baumann, T M; Drewsen, M; Ullrich, J; Schmidt, P O; López-Urrutia, J R Crespo

    2015-03-13

    Control over the motional degrees of freedom of atoms, ions, and molecules in a field-free environment enables unrivalled measurement accuracies but has yet to be applied to highly charged ions (HCIs), which are of particular interest to future atomic clock designs and searches for physics beyond the Standard Model. Here, we report on the Coulomb crystallization of HCIs (specifically (40)Ar(13+)) produced in an electron beam ion trap and retrapped in a cryogenic linear radiofrequency trap by means of sympathetic motional cooling through Coulomb interaction with a directly laser-cooled ensemble of Be(+) ions. We also demonstrate cooling of a single Ar(13+) ion by a single Be(+) ion-the prerequisite for quantum logic spectroscopy with a potential 10(-19) accuracy level. Achieving a seven-orders-of-magnitude decrease in HCI temperature starting at megakelvin down to the millikelvin range removes the major obstacle for HCI investigation with high-precision laser spectroscopy.

  4. Ion specific effects on charged interfaces

    OpenAIRE

    Medda, Luca

    2013-01-01

    The physico-chemical phenomena occurring at charged interfaces are specifically affected by the type and the concentration of electrolytes. This has implications both in living and in inorganic systems. The discovery of the ‘ion specific effects’ dates back to Hofmeister (1888), who observed the specific effect of salts in promoting egg white proteins precipitation. Nowadays we are aware that ion specific effects are ubiquitous in all fields of science and technology where electrolytes play a...

  5. Charge Exchange Effect on Space-Charge-Limited Current Densities in Ion Diode

    Institute of Scientific and Technical Information of China (English)

    石磊

    2002-01-01

    The article theoretically studied the charge-exchange effects on space charge limited electron and ion current densities of non-relativistic one-dimensional slab ion diode, and compared with those of without charge exchange.

  6. Production of Charge in Heavy Ion Collisions

    CERN Document Server

    Pratt, Scott; Ratti, Claudia

    2015-01-01

    By analyzing preliminary experimental measurements of charge-balance functions from the STAR Collaboration at the Relativistic-Heavy-Ion Collider (RHIC), it is found that pictures where balancing charges are produced in a single surge, and therefore separated by a single length scale, are inconsistent with data. In contrast, a model that assumes two surges, one associated with the formation of a thermalized quark-gluon plasma and a second associated with hadronization, provides a far superior reproduction of the data. A statistical analysis of the model comparison finds that the two-surge model best reproduces the data if the charge production from the first surge is similar to expectations for equilibrated matter taken from lattice gauge theory. The charges created in the first surge appear to separate by approximately one unit of spatial rapidity before emission, while charges from the second wave appear to have separated by approximately a half unit or less.

  7. Charge Transfer Dissociation (CTD) Mass Spectrometry of Peptide Cations: Study of Charge State Effects and Side-Chain Losses

    Science.gov (United States)

    Li, Pengfei; Jackson, Glen P.

    2017-01-01

    1+, 2+, and 3+ precursors of substance P and bradykinin were subjected to helium cation irradiation in a 3D ion trap mass spectrometer. Charge exchange with the helium cations produces a variety of fragment ions, the number and type of which are dependent on the charge state of the precursor ions. For 1+ peptide precursors, fragmentation is generally restricted to C-CO backbone bonds (a and x ions), whereas for 2+ and 3+ peptide precursors, all three backbone bonds (C-CO, C-N, and N-Cα) are cleaved. The type of backbone bond cleavage is indicative of possible dissociation channels involved in CTD process, including high-energy, kinetic-based, and ETD-like pathways. In addition to backbone cleavages, amino acid side-chain cleavages are observed in CTD, which are consistent with other high-energy and radical-mediated techniques. The unique dissociation pattern and supplementary information available from side-chain cleavages make CTD a potentially useful activation method for the structural study of gas-phase biomolecules.

  8. MALDI versus ESI: The Impact of the Ion Source on Peptide Identification.

    Science.gov (United States)

    Nadler, Wiebke Maria; Waidelich, Dietmar; Kerner, Alexander; Hanke, Sabrina; Berg, Regina; Trumpp, Andreas; Rösli, Christoph

    2017-02-15

    For mass spectrometry-based proteomic analyses, electrospray ionization (ESI) and matrix-assisted laser desorption/ionization (MALDI) are the commonly used ionization techniques. To investigate the influence of the ion source on peptide detection in large-scale proteomics, an optimized GeLC/MS workflow was developed and applied either with ESI/MS or with MALDI/MS for the proteomic analysis of different human cell lines of pancreatic origin. Statistical analysis of the resulting data set with more than 72 000 peptides emphasized the complementary character of the two methods, as the percentage of peptides identified with both approaches was as low as 39%. Significant differences between the resulting peptide sets were observed with respect to amino acid composition, charge-related parameters, hydrophobicity, and modifications of the detected peptides and could be linked to factors governing the respective ion yields in ESI and MALDI.

  9. Commercial intermediate pressure MALDI ion mobility spectrometry mass spectrometer capable of producing highly charged laserspray ionization ions.

    Science.gov (United States)

    Inutan, Ellen D; Wang, Beixi; Trimpin, Sarah

    2011-02-01

    The first examples of highly charged ions observed under intermediate pressure (IP) vacuum conditions are reported using laser ablation of matrix/analyte mixtures. The method and results are similar to those obtained at atmospheric pressure (AP) using laserspray ionization (LSI) and/or matrix assisted inlet ionization (MAII). Electrospray ionization (ESI), LSI, and MAII are methods operating at AP and have been shown, with or without the use of a voltage or a laser, to produce highly charged ions with very similar ion abundance and charge states. A commercial matrix-assisted laser desorption/ionization ion mobility spectrometry (IMS) mass spectrometry (MS) instrument (SYNAPT G2) was used for the IP developments. The necessary conditions for producing highly charged ions of peptides and small proteins at IP appear to be a pressure drop region and the use of suitable matrixes and laser fluence. Ionization to produce these highly charged ions under the low pressure conditions of IP does not require specific heating or a special inlet ion transfer region. However, under the current setup, ubiquitin is the highest molecular weight protein observed. These findings are in accord with the need to provide thermal energy in the pressure drop region, similar to LSI and MAII, to improve sensitivity and extend the types of compounds that produce highly charged ions. The practical utility of IP-LSI in combination with IMS-MS is demonstrated for the analysis of model mixtures composed of a lipid, peptides, and a protein. Further, endogenous multiply charged peptides are observed directly from delipified mouse brain tissue with drift time distributions that are nearly identical in appearance to those obtained from a synthesized neuropeptide standard analyzed by either LSI- or ESI-IMS-MS at AP. Efficient solvent-free gas-phase separation enabled by the IMS dimension separates the multiply charged peptides from lipids that remained on the delipified tissue. Lipid and peptide

  10. Radioactive decays of highly-charged ions

    Directory of Open Access Journals (Sweden)

    Gao B. S.

    2015-01-01

    Full Text Available Access to stored and cooled highly-charged radionuclides offers unprecedented opportunities to perform high-precision investigations of their decays. Since the few-electron ions, e.g. hydrogen- or helium-like ions, are quantum mechanical systems with clear electronic ground state configurations, the decay studies of such ions are performed under well-defined conditions and allow for addressing fundamental aspects of the decay process. Presented here is a compact review of the relevant experiments conducted at the Experimental Storage Ring ESR of GSI. A particular emphasis is given to the investigations of the two-body beta decay, namely the bound-state β-decay and its time-mirrored counterpart, orbital electron-capture.

  11. Dielectronic recombination of multiply charged ions

    Energy Technology Data Exchange (ETDEWEB)

    Datz, S.; Dittner, P.F.; Fou, C.M.; Miller, P.D.; Pepmiller, P.L.

    1986-09-01

    Using a merged electron-ion merged beam apparatus in conjunction with the ORNL EN Tandem Van de Graaff, we have measured dielectronic recombination in ..delta..n = 0 transitions for a number of Li-liked (B/sup 2 +/, C/sup 3 +/, N/sup 4 +/, and O/sup 5 +/), Be-like (C/sup 2 +/, N/sup 3 +/, and O/sup 4 +/), B-like (N/sup 2 +/, O/sup 3 +/, and F/sup 4 +/), and Na-like (P/sup 4 +/, S/sup 5 +/, and Cl/sup 6 +/) ions. The results are compared with theory which includes field enhancement and extension of the more highly charged ions is discussed. 11 refs., 11 figs.

  12. Precision mass measurements of highly charged ions

    Science.gov (United States)

    Kwiatkowski, A. A.; Bale, J. C.; Brunner, T.; Chaudhuri, A.; Chowdhury, U.; Ettenauer, S.; Frekers, D.; Gallant, A. T.; Grossheim, A.; Lennarz, A.; Mane, E.; MacDonald, T. D.; Schultz, B. E.; Simon, M. C.; Simon, V. V.; Dilling, J.

    2012-10-01

    The reputation of Penning trap mass spectrometry for accuracy and precision was established with singly charged ions (SCI); however, the achievable precision and resolving power can be extended by using highly charged ions (HCI). The TITAN facility has demonstrated these enhancements for long-lived (T1/2>=50 ms) isobars and low-lying isomers, including ^71Ge^21+, ^74Rb^8+, ^78Rb^8+, and ^98Rb^15+. The Q-value of ^71Ge enters into the neutrino cross section, and the use of HCI reduced the resolving power required to distinguish the isobars from 3 x 10^5 to 20. The precision achieved in the measurement of ^74Rb^8+, a superallowed β-emitter and candidate to test the CVC hypothesis, rivaled earlier measurements with SCI in a fraction of the time. The 111.19(22) keV isomeric state in ^78Rb was resolved from the ground state. Mass measurements of neutron-rich Rb and Sr isotopes near A = 100 aid in determining the r-process pathway. Advanced ion manipulation techniques and recent results will be presented.

  13. Substituent effects on the gas-phase fragmentation reactions of sulfonium ion containing peptides.

    Science.gov (United States)

    Sierakowski, James; Amunugama, Mahasilu; Roberts, Kade D; Reid, Gavin E

    2007-01-01

    The multistage mass spectrometric (MS/MS and MS3) gas-phase fragmentation reactions of methionine side-chain sulfonium ion containing peptides formed by reaction with a series of para-substituted phenacyl bromide (XBr where X=CH2COC6H4R, and R=--COOH, --COOCH3, --H, --CH3 and --CH2CH3) alkylating reagents have been examined in a linear quadrupole ion trap mass spectrometer. MS/MS of the singly (M+) and multiply ([M++nH](n+1)+) charged precursor ions results in exclusive dissociation at the fixed charge containing side chain, independently of the amino acid composition and precursor ion charge state (i.e., proton mobility). However, loss of the methylphenacyl sulfide side-chain fragment as a neutral versus charged (protonated) species was observed to be highly dependent on the proton mobility of the precursor ion, and the identity of the phenacyl group para-substituent. Molecular orbital calculations were performed at the B3LYP/6-31+G** level of theory to calculate the theoretical proton affinities of the neutral side-chain fragments. The log of the ratio of neutral versus protonated side-chain fragment losses from the derivatized side chain were found to exhibit a linear dependence on the proton affinity of the side-chain fragmentation product, as well as the proton affinities of the peptide product ions. Finally, MS3 dissociation of the nominally identical neutral and protonated loss product ions formed by MS/MS of the [M++H]2+ and [M++2H]3+ precursor ions, respectively, from the peptide GAILM(X)GAILK revealed significant differences in the abundances of the resultant product ions. These results suggest that the protonated peptide product ions formed by gas-phase fragmentation of sulfonium ion containing precursors in an ion trap mass spectrometer do not necessarily undergo intramolecular proton 'scrambling' prior to their further dissociation, in contrast to that previously demonstrated for peptide ions introduced by external ionization sources.

  14. (The physics of highly charged ions)

    Energy Technology Data Exchange (ETDEWEB)

    Phaneuf, R.A.

    1990-10-12

    The Fifth International Conference on the Physics of Highly Charged Ions drew more than 200 participants, providing an excellent overview of this growing field. Important technical developments and experimental results in electron-ion collisions were reported. The merging of fast ion beams from accelerators or storage rings with advanced high-intensity electron-beam targets has yielded data of unprecedented quality on radiative and dielectronic recombination, providing stringent tests of theory. Long-awaited technical innovations in electron-impact excitation measurements were also reported. The level of activity in multicharged ion-surface interactions has increased. More sophisticated experimental studies of the neutralization process have shown the inadequacy of previously accepted mechanisms, and theoretical activity in this area is just being initiated. The IAEA meetings addressed atomic and molecular data needs for fusion research, with ITER providing a key focus. Such data are especially critical to modeling and diagnostics of the edge plasma. The ALADDIN data base system has been universally accepted and has streamlined the exchange of numerical data among data centers and the fusion community. The IAEA continues to play a pivotal role in the identification of data needs, and in the coordination of data compilation and research activities for fusion applications.

  15. Development of a linear ion trap/orthogonal-time-of-flight mass spectrometer for time-dependent observation of product ions by ultraviolet photodissociation of peptide ions.

    Science.gov (United States)

    Kim, Tae-Young; Schwartz, Jae C; Reilly, James P

    2009-11-01

    A hybrid linear ion trap/orthogonal time-of-flight (TOF) mass spectrometer has been developed to observe time-dependent vacuum ultraviolet photodissociation product ions. In this apparatus, a reflectron TOF mass analyzer is orthogonally interfaced to an LTQ using rf-only octopole and dc quadrupole ion guides. Precursor ions are generated by electrospray ionization and isolated in the ion trap. Subsequently they are directed to the TOF source where photodissociation occurs and product ions are extracted for mass analysis. To detect photodissociation product ions having axially divergent trajectories, a large rectangular detector is utilized. With variation of the time between photodissociation and orthogonal extraction in the TOF source, product ions formed over a range of times after photoexcitation can be sampled. Time-dependent observation of product ions following 157 nm photodissociation of a singly charged tryptic peptide ion (NWDAGFGR) showed that prompt photofragment ions (x- and v-type ions) dominate the tandem mass spectrum up to 1 micros after the laser shot, but the intensities of low energy thermal fragment ions (y-type ions) become comparable several microseconds later. Different proton mobilization time scales were observed for arginine- and lysine-terminated tryptic peptides.

  16. Study on charge equilibration time of highly charged ions in carbon foils

    Institute of Scientific and Technical Information of China (English)

    Fang Yan; Xiao Guo-Qing; Xu Hu-Shan; Sun Zhi-Yu; Zhao Yong-Wao; Hu Zheng-Guo; Xu Hua-Gen; Huang Wian-Heng; Wang Yu-Yu

    2008-01-01

    Charge state distribution of 0.8MeV/u uranium ions after transmission through a thin carbon foil has been studied.It is observed that the charge state distribution is equilibrated after the uranium ions have passed through a 15 μg/cm2 carbon foil.The equilibrated average charge state is 33.72 and the charge equilibration time of uranium ions in carbon foil is less than 5.4fs.

  17. Role of acetylation and charge in antimicrobial peptides based on human beta-defensin-3.

    Science.gov (United States)

    Papanastasiou, Emilios Andrew; Hua, Quyen; Sandouk, Aline; Son, U Hyon; Christenson, Andrew James; Van Hoek, Monique Louise; Bishop, Barney Michael

    2009-07-01

    Cationic antimicrobial peptides are an evolutionarily ancient and essential element of innate immunity in higher organisms. The precise mechanism by which these peptides exert their antimicrobial activity on bacteria is not well understood. Decapeptides based on the C-terminus of human beta-defensin-3 were designed and evaluated to study the role of charge in defining the antimicrobial activity and selectivity of these peptides against Escherichia coli. Acetylated derivatives of these peptides were prepared in order to further evaluate how positively charged primary amines contribute to potency in these small antimicrobial peptides. These peptides enabled us to explore the relationship between net charge, charge distribution and antimicrobial activity. While the results indicate that net charge is a major factor in antimicrobial activity in these peptides, the actual relationship between charge and potency appears to be more complex.

  18. Negative Ion In-Source Decay Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry for Sequencing Acidic Peptides

    Science.gov (United States)

    McMillen, Chelsea L.; Wright, Patience M.; Cassady, Carolyn J.

    2016-05-01

    Matrix-assisted laser desorption/ionization (MALDI) in-source decay was studied in the negative ion mode on deprotonated peptides to determine its usefulness for obtaining extensive sequence information for acidic peptides. Eight biological acidic peptides, ranging in size from 11 to 33 residues, were studied by negative ion mode ISD (nISD). The matrices 2,5-dihydroxybenzoic acid, 2-aminobenzoic acid, 2-aminobenzamide, 1,5-diaminonaphthalene, 5-amino-1-naphthol, 3-aminoquinoline, and 9-aminoacridine were used with each peptide. Optimal fragmentation was produced with 1,5-diaminonphthalene (DAN), and extensive sequence informative fragmentation was observed for every peptide except hirudin(54-65). Cleavage at the N-Cα bond of the peptide backbone, producing c' and z' ions, was dominant for all peptides. Cleavage of the N-Cα bond N-terminal to proline residues was not observed. The formation of c and z ions is also found in electron transfer dissociation (ETD), electron capture dissociation (ECD), and positive ion mode ISD, which are considered to be radical-driven techniques. Oxidized insulin chain A, which has four highly acidic oxidized cysteine residues, had less extensive fragmentation. This peptide also exhibited the only charged localized fragmentation, with more pronounced product ion formation adjacent to the highly acidic residues. In addition, spectra were obtained by positive ion mode ISD for each protonated peptide; more sequence informative fragmentation was observed via nISD for all peptides. Three of the peptides studied had no product ion formation in ISD, but extensive sequence informative fragmentation was found in their nISD spectra. The results of this study indicate that nISD can be used to readily obtain sequence information for acidic peptides.

  19. Lithium-Ion Cell Charge-Control Unit Developed

    Science.gov (United States)

    Reid, Concha M.; Manzo, Michelle A.; Buton, Robert M.; Gemeiner, Russel

    2005-01-01

    A lithium-ion (Li-ion) cell charge-control unit was developed as part of a Li-ion cell verification program. This unit manages the complex charging scheme that is required when Li-ion cells are charged in series. It enables researchers to test cells together as a pack, while allowing each cell to charge individually. This allows the inherent cell-to-cell variations to be addressed on a series string of cells and reduces test costs substantially in comparison to individual cell testing.

  20. Water and Ion Permeation through Electrically Charged Nanopore

    Institute of Scientific and Technical Information of China (English)

    ZENG Li; ZUO Guang-Hong; GONG Xiao-Jing; LU Hang-Jun; WANG Chun-Lei; WU Ke-Fei; WAN Rong-Zheng

    2008-01-01

    @@ The behaviour of water and small solutes in confined geometries is important to a variety of chemical and nanofluidic applications. Here we investigate the permeation and distribution of water and ions in electrically charged carbon cylindrical nanopore during the osmotic process using molecular dynamics simulations. In the simulations, charges are distributed uniformly on the pores with diameter of 0.9 nm. For nanopores with no charge or a low charge, ions are difficult to enter. With the increasing of charge densities on the pores, ions will appear inside the nanopores because of the large electronic forces between the ions and the charged pores. Different ion entries induce varying effects on osmotic water flow. Our simulations reveal that the osmotic water can flow through the negatively charged pore occupied by K+ ions, while water flux through the positively charged pores will be disrupted by Cl- ions inside the pores. This may be explained by the different radial distributions of K+ions and Cl- ions inside the charged nanopores.

  1. Frequency metrology using highly charged ions

    Science.gov (United States)

    Crespo López-Urrutia, J. R.

    2016-06-01

    Due to the scaling laws of relativistic fine structure splitting, many forbidden optical transitions appear within the ground state configurations of highly charged ions (HCI). In some hydrogen-like ions, even the hyperfine splitting of the 1s ground state gives rise to optical transitions. Given the very low polarizability of HCI, such laser-accessible transitions are extremely impervious to external perturbations and systematics that limit optical clock performance and arise from AC and DC Stark effects, such as black-body radiation and light shifts. Moreover, AC and DC Zeeman splitting are symmetric due to the much larger relativistic spin-orbit coupling and corresponding fine-structure splitting. Appropriate choice of states or magnetic sub-states with suitable total angular momentum and magnetic quantum numbers can lead to a cancellation of residual quadrupolar shifts. All these properties are very advantageous for the proposed use of HCI forbidden lines as optical frequency standards. Extremely magnified relativistic, quantum electrodynamic, and nuclear size contributions to the binding energies of the optically active electrons make HCI ideal tools for fundamental research, as in proposed studies of a possible time variation of the fine structure constant. Beyond this, HCI that cannot be photoionized by vacuum-ultraviolet photons could also provide frequency standards for future lasers operating in that range.

  2. Metal ion binding to peptides: Oxygen or nitrogen sites?

    NARCIS (Netherlands)

    Dunbar, R. C.; Polfer, N. C.; G. Berden,; Oomens, J.

    2012-01-01

    Infrared multiple-photon dissociation (IRMPD) spectroscopy was used to probe the conformations of gas-phase metal-ion complexes between a series of five metal ions and six small peptide ligands. This report is presented in recognition and tribute for the Armentrout group's long and hugely produ

  3. Metal ion binding to peptides: oxygen or nitrogen sites?

    NARCIS (Netherlands)

    R.C. Dunbar; N.C. Polfer; G. Berden; J. Oomens

    2012-01-01

    Infrared multiple-photon dissociation (IRMPD) spectroscopy was used to probe the conformations of gas-phase metal-ion complexes between a series of five metal ions and six small peptide ligands. This report is presented in recognition and tribute for the Armentrout group's long and hugely productive

  4. Cooling of highly charged ions in a Penning trap

    Energy Technology Data Exchange (ETDEWEB)

    Gruber, L

    2000-03-31

    Highly charged ions are extracted from an electron beam ion trap and guided to Retrap, a cryogenic Penning trap, where they are merged with laser cooled Be{sup +} ions. The Be{sup +} ions act as a coolant for the hot highly charged ions and their temperature is dropped by about 8 orders of magnitude in a few seconds. Such cold highly charged ions form a strongly coupled nonneutral plasma exhibiting, under such conditions, the aggregation of clusters and crystals. Given the right mixture, these plasmas can be studied as analogues of high density plasmas like white dwarf interiors, and potentially can lead to the development of cold highly charged ion beams for applications in nanotechnology. Due to the virtually non existent Doppler broadening, spectroscopy on highly charged ions can be performed to an unprecedented precision. The density and the temperature of the Be{sup +} plasma were measured and highly charged ions were sympathetically cooled to similar temperatures. Molecular dynamics simulations confirmed the shape, temperature and density of the highly charged ions. Ordered structures were observed in the simulations.

  5. Transfer ionization in collisions with a fast highly charged ion.

    Science.gov (United States)

    Voitkiv, A B

    2013-07-26

    Transfer ionization in fast collisions between a bare ion and an atom, in which one of the atomic electrons is captured by the ion whereas another one is emitted, crucially depends on dynamic electron-electron correlations. We show that in collisions with a highly charged ion a strong field of the ion has a very profound effect on the correlated channels of transfer ionization. In particular, this field weakens (strongly suppresses) electron emission into the direction opposite (perpendicular) to the motion of the ion. Instead, electron emission is redirected into those parts of the momentum space which are very weakly populated in fast collisions with low charged ions.

  6. Ion-pair mediated transport of small model peptides in liquid phase micro extraction under acidic conditions.

    Science.gov (United States)

    Reubsaet, J Léon E; Paulsen, Jonas V

    2005-02-01

    This paper discusses the behaviour of five small model peptides in a three phase (aqueous donor-organic-aqueous acceptor) liquid phase micro extraction system in relation to their physico-chemical properties (charge, hydrophobicity). It is proved that for all peptides transport over the organic phase is mediated by aliphatic sulphonic acids. Heptane-1-sulphonic acid gave the best overall recoveries. It appeared that peptides with hydrophobic properties (IPI) and a high number of positive charges (KYK) show good recoveries and are enriched in the acceptor phase. Variation in the pH (1.6-4.4) of the donor phase shows that there are peptide-dependent optimal pH-values for their recovery. Increasing pH in the acceptor phase shows that in most cases the recovery decreases due to decreased ion-pair mediated membrane transport. For KYK the partition between the organic phase and the aqueous acceptor-phase is also driven by the solubility in the aqueous acceptor phase. Increase of the ion strength of the acceptor phase did not affect the recovery of the peptides. Except for KYK, which showed decreased recovery when the ion strength increased. Another finding is that delocalisation of positive charge causes bad recovery, probably due to incomplete ion-pair-peptide complex formation.

  7. Peptide immobilisation on porous silicon surface for metal ions detection

    Directory of Open Access Journals (Sweden)

    Chazalviel Jean-Noël

    2011-01-01

    Full Text Available Abstract In this work, a Glycyl-Histidyl-Glycyl-Histidine (GlyHisGlyHis peptide is covalently anchored to the porous silicon PSi surface using a multi-step reaction scheme compatible with the mild conditions required for preserving the probe activity. In a first step, alkene precursors are grafted onto the hydrogenated PSi surface using the hydrosilylation route, allowing for the formation of a carboxyl-terminated monolayer which is activated by reaction with N-hydroxysuccinimide in the presence of a peptide-coupling carbodiimide N-ethyl-N'-(3-dimethylaminopropyl-carbodiimide and subsequently reacted with the amino linker of the peptide to form a covalent amide bond. Infrared spectroscopy (FT-IR and X-ray photoelectron spectroscopy are used to investigate the different steps of functionalization. The property of peptides to form stable complexes with metal ions is exploited to achieve metal-ion recognition by the peptide-modified PSi-based biosensor. An electrochemical study of the GlyHisGlyHis-modified PSi electrode is achieved in the presence of copper ions. The recorded cyclic voltammograms show a quasi-irreversible process corresponding to the Cu(II/Cu(I couple. The kinetic factors (the heterogeneous rate constant and the transfer coefficient and the stability constant of the complex formed on the porous silicon surface are determined. These results demonstrate the potential role of peptides grafted on porous silicon in developing strategies for simple and fast detection of metal ions in solution.

  8. Peptide immobilisation on porous silicon surface for metal ions detection

    Science.gov (United States)

    Sam, Sabrina S.; Chazalviel, Jean-Noël Jn; Gouget-Laemmel, Anne Chantal Ac; Ozanam, François F.; Etcheberry, Arnaud A.; Gabouze, Nour-Eddine N.

    2011-06-01

    In this work, a Glycyl-Histidyl-Glycyl-Histidine (GlyHisGlyHis) peptide is covalently anchored to the porous silicon PSi surface using a multi-step reaction scheme compatible with the mild conditions required for preserving the probe activity. In a first step, alkene precursors are grafted onto the hydrogenated PSi surface using the hydrosilylation route, allowing for the formation of a carboxyl-terminated monolayer which is activated by reaction with N-hydroxysuccinimide in the presence of a peptide-coupling carbodiimide N-ethyl- N'-(3-dimethylaminopropyl)-carbodiimide and subsequently reacted with the amino linker of the peptide to form a covalent amide bond. Infrared spectroscopy (FT-IR) and X-ray photoelectron spectroscopy are used to investigate the different steps of functionalization. The property of peptides to form stable complexes with metal ions is exploited to achieve metal-ion recognition by the peptide-modified PSi-based biosensor. An electrochemical study of the GlyHisGlyHis-modified PSi electrode is achieved in the presence of copper ions. The recorded cyclic voltammograms show a quasi-irreversible process corresponding to the Cu(II)/Cu(I) couple. The kinetic factors (the heterogeneous rate constant and the transfer coefficient) and the stability constant of the complex formed on the porous silicon surface are determined. These results demonstrate the potential role of peptides grafted on porous silicon in developing strategies for simple and fast detection of metal ions in solution.

  9. Peptide immobilisation on porous silicon surface for metal ions detection.

    Science.gov (United States)

    Sam, Sabrina S; Chazalviel, Jean-Noël Jn; Gouget-Laemmel, Anne Chantal Ac; Ozanam, François F; Etcheberry, Arnaud A; Gabouze, Nour-Eddine N

    2011-01-01

    In this work, a Glycyl-Histidyl-Glycyl-Histidine (GlyHisGlyHis) peptide is covalently anchored to the porous silicon PSi surface using a multi-step reaction scheme compatible with the mild conditions required for preserving the probe activity. In a first step, alkene precursors are grafted onto the hydrogenated PSi surface using the hydrosilylation route, allowing for the formation of a carboxyl-terminated monolayer which is activated by reaction with N-hydroxysuccinimide in the presence of a peptide-coupling carbodiimide N-ethyl-N'-(3-dimethylaminopropyl)-carbodiimide and subsequently reacted with the amino linker of the peptide to form a covalent amide bond. Infrared spectroscopy (FT-IR) and X-ray photoelectron spectroscopy are used to investigate the different steps of functionalization.The property of peptides to form stable complexes with metal ions is exploited to achieve metal-ion recognition by the peptide-modified PSi-based biosensor. An electrochemical study of the GlyHisGlyHis-modified PSi electrode is achieved in the presence of copper ions. The recorded cyclic voltammograms show a quasi-irreversible process corresponding to the Cu(II)/Cu(I) couple. The kinetic factors (the heterogeneous rate constant and the transfer coefficient) and the stability constant of the complex formed on the porous silicon surface are determined. These results demonstrate the potential role of peptides grafted on porous silicon in developing strategies for simple and fast detection of metal ions in solution.

  10. Photons shedding light on electron capture by highly charged ions

    NARCIS (Netherlands)

    Hoekstra, Romke Anne

    1990-01-01

    In this thesis charge transfer is studied in collisions of highly charged ions (Aq+) with neutral particles (B). Because the electron is captured resonantly (i.e. without its binding energy) by the ion, a limited number of highly excited states (characterized by the quantum numbers nlm) is preferent

  11. Problems with Accurate Atomic Lfetime Measurements of Multiply Charged Ions

    Energy Technology Data Exchange (ETDEWEB)

    Trabert, E

    2009-02-19

    A number of recent atomic lifetime measurements on multiply charged ions have reported uncertainties lower than 1%. Such a level of accuracy challenges theory, which is a good thing. However, a few lessons learned from earlier precision lifetime measurements on atoms and singly charged ions suggest to remain cautious about the systematic errors of experimental techniques.

  12. Affecting proton mobility in activated peptide and whole protein ions via lysine guanidination.

    Science.gov (United States)

    Pitteri, Sharon J; Reid, Gavin E; McLuckey, Scott A

    2004-01-01

    We have evaluated the effect of lysine guanidination in peptides and proteins on the dissociation of protonated ions in the gas phase. The dissociation of guanidinated model peptide ions compared to their unmodified forms showed behavior consistent with concepts of proton mobility as a major factor in determining favored fragmentation channels. Reduction of proton mobility associated with lysine guanidination was reflected by a relative increase in cleavages occurring C-terminal to aspartic acid residues as well as increases in small molecule losses. To evaluate the effect of guanidination on the dissociation behavior of whole protein ions, bovine ubiquitin was selected as a model. Essentially, all of the amide bond cleavages associated with the +10 charge state of fully guanidinated ubiquitin were observed to occur C-terminal to aspartic acid residues, unlike the dissociation behavior of the +10 ion of the unmodified protein, where competing cleavage N-terminal to proline and nonspecific amide bond cleavages were also observed. The +8 and lower charge states of the guanidinated protein showed prominent losses of small neutral molecules. This overall fragmentation behavior is consistent with current hypotheses regarding whole protein dissociation that consider proton mobility and intramolecular charge solvation as important factors in determining favored dissociation channels, and are also consistent with the fragmentation behaviors observed for the guanidinated model peptide ions. Further evaluation of the utility of condensed phase guanidination of whole proteins is necessary but the results described here confirm that guanidination can be an effective strategy for enhancing C-terminal aspartic acid cleavages. Gas phase dissociation exclusively at aspartic acid residues, especially for whole protein ions, could be useful in identifying and characterizing proteins via tandem mass spectrometry of whole protein ions.

  13. Ion and water transport in charge-modified graphene nanopores

    CERN Document Server

    Qiu, Yinghua; Chen, Weiyu; Si, Wei; Tan, Qiyan; Chen, Yunfei

    2016-01-01

    Porous graphene has high mechanical strength and atomic layer thickness, which make it a promising material for material separation and biomolecule sensing. Electrostatic interactions between charges in aqueous solution are a kind of strong long-range interaction which may have great influence on the fluid transport through nanopores. Here, molecular dynamics simulations were conducted to investigate ion and water transport through a 1.05-nm-in-diameter monolayer graphene nanopore with its edge charge-modified. From the results, it is found that the nanopores are selective to counterions when they are charged. As the charge amount increases, the total ionic currents show an increase-decrease profile while the co-ion currents monotonously decrease. The co-ions rejection can reach 75% and 90% when the nanopores are negatively and positively charged, respectively. Cl ions current increases and reaches a plateau, and Na+ current decreases with the charge amount in the systems where they act as counterions. Beside...

  14. Experimental results on charge fluctuations in heavy-ion collisions

    CERN Document Server

    Mishra, D K; Netrakanti, P K; Pant, L M; Mohanty, A K

    2016-01-01

    We present a subset of experimental results on charge fluctuation from the heavy-ion collisions to search for phase transition and location of critical point in the QCD phase diagram. Measurements from the heavy-ion experiments at the SPS and RHIC energies observe that total charge fluctuations increase from central to peripheral collisions. The net-charge fluctuations in terms of dynamical fluctuation measure $\

  15. Ion and water transport in charge-modified graphene nanopores

    Institute of Scientific and Technical Information of China (English)

    裘英华; 李堃; 陈伟宇; 司伟; 谭启檐; 陈云飞

    2015-01-01

    Porous graphene has a high mechanical strength and an atomic-layer thickness that makes it a promising material for material separation and biomolecule sensing. Electrostatic interactions between charges in aqueous solutions are a type of strong long-range interaction that may greatly infl uence fl uid transport through nanopores. In this study, molecular dynamic simulations were conducted to investigate ion and water transport through 1.05-nm diameter monolayer graphene nanopores, with their edges charge-modified. Our results indicated that these nanopores are selective to counterions when they are charged. As the charge amount increases, the total ionic currents show an increase–decrease profile while the co-ion currents monotonically decrease. The co-ion rejection can reach 76.5%and 90.2%when the nanopores are negatively and positively charged, respectively. The Cl−ion current increases and reaches a plateau, and the Na+current decreases as the charge amount increases in systems in which Na+ions act as counterions. In addition, charge modification can enhance water transport through nanopores. This is mainly due to the ion selectivity of the nanopores. Notably, positive charges on the pore edges facilitate water transport much more strongly than negative charges.

  16. Synthetic Channel-forming Peptides and Ion Selectivity

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    @@ Introduction Peptides made up of alternating L- and D- amino acids can form β-helices as in gramicidin A or cyclic peptides that aggregate to form tubes[1]. In both cases the structures are hollow with all the side chains projecting outwards. Kennedy et al. [2] postulated that peptides having the (LLLD)n configuration could form helices with every fourth side chain projecting inward.It is a fact that synthetic N-formyl-( LeuSerLeuGly)6-OH, when added to a lipid bilayer, dimerizes, to form ion channels having conductances greater than that of gramicidin.

  17. Evaporative cooling of highly charged ions in EBIT (Electron Beam Ion Trap): An experimental realization

    Energy Technology Data Exchange (ETDEWEB)

    Schneider, M.B.; Levine, M.A.; Bennett, C.L.; Henderson, J.R.; Knapp, D.A.; Marrs, R.E.

    1988-12-01

    Both the total number and trapping lifetime of near-neon-like gold ions held in an electron beam ion trap have been greatly increased by a process of 'evaporative cooling'. A continuous flow of low-charge-state ions into the trap cools the high-charge-state ions in the trap. Preliminary experimental results using titanium ions as a coolant are presented. 8 refs., 6 figs., 2 tabs.

  18. The charge spectrum of positive ions in a hydrogen aurora

    Science.gov (United States)

    Lynch, J.; Pulliam, D.; Leach, R.; Scherb, F.

    1976-01-01

    An auroral ion charge spectrometer was flown into a hydrogen aurora on a Javelin sounding rocket launched from Churchill, Manitoba. The instrument contained an electrostatic analyzer which selected particles with incident energy per unit charge up to 20 keV/charge and an 80-kV power supply which accelerated these ions onto an array of solid state detectors. Ions tentatively identified as H(+), He(+2), and O(+) were detected from 225 to 820 km in altitude. The experiment did not discriminate between H(+) and He(+), or between O(+), N(+), and C(+). Upper limits of highly charged heavy ion abundances have been set at 20% of the He(+2) and 0.15% of the H(+). It is concluded that both terrestrial and solar wind sources play significant roles in auroral ion precipitation.

  19. A singly charged ion source for radioactive 11C ion acceleration

    Science.gov (United States)

    Katagiri, K.; Noda, A.; Nagatsu, K.; Nakao, M.; Hojo, S.; Muramatsu, M.; Suzuki, K.; Wakui, T.; Noda, K.

    2016-02-01

    A new singly charged ion source using electron impact ionization has been developed to realize an isotope separation on-line system for simultaneous positron emission tomography imaging and heavy-ion cancer therapy using radioactive 11C ion beams. Low-energy electron beams are used in the electron impact ion source to produce singly charged ions. Ionization efficiency was calculated in order to decide the geometric parameters of the ion source and to determine the required electron emission current for obtaining high ionization efficiency. Based on these considerations, the singly charged ion source was designed and fabricated. In testing, the fabricated ion source was found to have favorable performance as a singly charged ion source.

  20. A singly charged ion source for radioactive {sup 11}C ion acceleration

    Energy Technology Data Exchange (ETDEWEB)

    Katagiri, K.; Noda, A.; Nagatsu, K.; Nakao, M.; Hojo, S.; Muramatsu, M.; Suzuki, K.; Wakui, T.; Noda, K. [National Institute of Radiological Sciences, 4-9-1 Anagawa, Inage-ku, Chiba-shi, Chiba 263-8555 (Japan)

    2016-02-15

    A new singly charged ion source using electron impact ionization has been developed to realize an isotope separation on-line system for simultaneous positron emission tomography imaging and heavy-ion cancer therapy using radioactive {sup 11}C ion beams. Low-energy electron beams are used in the electron impact ion source to produce singly charged ions. Ionization efficiency was calculated in order to decide the geometric parameters of the ion source and to determine the required electron emission current for obtaining high ionization efficiency. Based on these considerations, the singly charged ion source was designed and fabricated. In testing, the fabricated ion source was found to have favorable performance as a singly charged ion source.

  1. The role of space charge compensation for ion beam extraction and ion beam transport (invited)

    Energy Technology Data Exchange (ETDEWEB)

    Spädtke, Peter, E-mail: p.spaedtke@gsi.de [GSI Helmholtzzentrum für Schwerionenforschung GmbH (Germany)

    2014-02-15

    Depending on the specific type of ion source, the ion beam is extracted either from an electrode surface or from a plasma. There is always an interface between the (almost) space charge compensated ion source plasma, and the extraction region in which the full space charge is influencing the ion beam itself. After extraction, the ion beam is to be transported towards an accelerating structure in most cases. For lower intensities, this transport can be done without space charge compensation. However, if space charge is not negligible, the positive charge of the ion beam will attract electrons, which will compensate the space charge, at least partially. The final degree of Space Charge Compensation (SCC) will depend on different properties, like the ratio of generation rate of secondary particles and their loss rate, or the fact whether the ion beam is pulsed or continuous. In sections of the beam line, where the ion beam is drifting, a pure electrostatic plasma will develop, whereas in magnetic elements, these space charge compensating electrons become magnetized. The transport section will provide a series of different plasma conditions with different properties. Different measurement tools to investigate the degree of space charge compensation will be described, as well as computational methods for the simulation of ion beams with partial space charge compensation.

  2. In-Trap Spectroscopy of Charge-Bred Radioactive Ions

    Science.gov (United States)

    Lennarz, A.; Grossheim, A.; Leach, K. G.; Alanssari, M.; Brunner, T.; Chaudhuri, A.; Chowdhury, U.; Crespo López-Urrutia, J. R.; Gallant, A. T.; Holl, M.; Kwiatkowski, A. A.; Lassen, J.; Macdonald, T. D.; Schultz, B. E.; Seeraji, S.; Simon, M. C.; Andreoiu, C.; Dilling, J.; Frekers, D.

    2014-08-01

    In this Letter, we introduce the concept of in-trap nuclear decay spectroscopy of highly charged radioactive ions and describe its successful application as a novel spectroscopic tool. This is demonstrated by a measurement of the decay properties of radioactive mass A=124 ions (here, In124 and Cs124) in the electron-beam ion trap of the TITAN facility at TRIUMF. By subjecting the trapped ions to an intense electron beam, the ions are charge bred to high charge states (i.e., equivalent to the removal of N-shell electrons), and an increase of storage times to the level of minutes without significant ion losses is achieved. The present technique opens the venue for precision spectroscopy of low branching ratios and is being developed in the context of measuring electron-capture branching ratios needed for determining the nuclear ground-state properties of the intermediate odd-odd nuclei in double-beta (ββ) decay.

  3. Electron capture by highly charged ions from surfaces and gases

    Energy Technology Data Exchange (ETDEWEB)

    Allen, F.

    2008-01-11

    In this study highly charged ions produced in Electron Beam Ion Traps are used to investigate electron capture from surfaces and gases. The experiments with gas targets focus on spectroscopic measurements of the K-shell x-rays emitted at the end of radiative cascades following electron capture into Rydberg states of Ar{sup 17+} and Ar{sup 18+} ions as a function of collision energy. The ions are extracted from an Electron Beam Ion Trap at an energy of 2 keVu{sup -1}, charge-selected and then decelerated down to 5 eVu{sup -1} for interaction with an argon gas target. For decreasing collision energies a shift to electron capture into low orbital angular momentum capture states is observed. Comparative measurements of the K-shell x-ray emission following electron capture by Ar{sup 17+} and Ar{sup 18+} ions from background gas in the trap are made and a discrepancy in the results compared with those from the extraction experiments is found. Possible explanations are discussed. For the investigation of electron capture from surfaces, highly charged ions are extracted from an Electron Beam Ion Trap at energies of 2 to 3 keVu{sup -1}, charge-selected and directed onto targets comprising arrays of nanoscale apertures in silicon nitride membranes. The highly charged ions implemented are Ar{sup 16+} and Xe{sup 44+} and the aperture targets are formed by focused ion beam drilling in combination with ion beam assisted thin film deposition, achieving hole diameters of 50 to 300 nm and aspect ratios of 1:5 to 3:2. After transport through the nanoscale apertures the ions pass through an electrostatic charge state analyzer and are detected. The percentage of electron capture from the aperture walls is found to be much lower than model predictions and the results are discussed in terms of a capillary guiding mechanism. (orig.)

  4. Charge breeding of radioactive ions with EBIS and EBIT

    CERN Document Server

    Wenander, Fredrik

    2010-01-01

    A charge state breeder, which transforms externally injected singly charged ions to a higher charge state q+, is an important tool which has applications within atomic, nuclear and even particle physics. The charge breeding concept of radioactive ions has already been demonstrated at REX-ISOLDE/CERN with the use of an Electron beam Ion Source (EBIS) and at several facilities employing Electron Resonance Cyclotron Ion Sources (ECRIS). As will be demonstrated in this paper, EBIS and Electron Beam Ion Traps (EBIT), are well suited for the task as they are capable of delivering clean, highly charged beams within a short transformation time. The increasing demand for highly charged ions of all kind of elements and isotopes, stable and radioactive, to be used for low-energy experiments such as TITAN at TRIUMF and MATS at FAIR, but also for post-acceleration to higher energies, is now pushing the development of the breeders. The next challenge will be to satisfy the needs, for example space-charge capacity, of the s...

  5. Auger neutralization rates of multiply charged ions near metal surfaces

    Energy Technology Data Exchange (ETDEWEB)

    Nedeljkovic, N.N.; Janev, R.K.; Lazur, V.Y.

    1988-08-15

    Transition rates for the Auger neutralization processes of multiply charged ions on metal surfaces are calculated in closed analytical form. The core potential of a multiply charged ion is represented by a pseudopotential, which accounts for the electron screening effects and allows transition to the pure Coulomb case (fully stripped ions). The relative importance of various neutralization channels in slow-ion--surface collisions is discussed for the examples of He/sup 2+/+Mo(100) and C/sup 3+/+Mo(100) collisional systems.

  6. Signatures of Mechanically Interlocked Topology of Lasso Peptides by Ion Mobility-Mass Spectrometry: Lessons from a Collection of Representatives

    Science.gov (United States)

    Fouque, Kevin Jeanne Dit; Lavanant, Hélène; Zirah, Séverine; Hegemann, Julian D.; Zimmermann, Marcel; Marahiel, Mohamed A.; Rebuffat, Sylvie; Afonso, Carlos

    2016-11-01

    Lasso peptides are characterized by a mechanically interlocked structure, where the C-terminal tail of the peptide is threaded and trapped within an N-terminal macrolactam ring. Their compact and stable structures have a significant impact on their biological and physical properties and make them highly interesting for drug development. Ion mobility - mass spectrometry (IM-MS) has shown to be effective to discriminate the lasso topology from their corresponding branched-cyclic topoisomers in which the C-terminal tail is unthreaded. In fact, previous comparison of the IM-MS data of the two topologies has yielded three trends that allow differentiation of the lasso fold from the branched-cyclic structure: (1) the low abundance of highly charged ions, (2) the low change in collision cross sections (CCS) with increasing charge state and (3) a narrow ion mobility peak width. In this study, a three-dimensional plot was generated using three indicators based on these three trends: (1) mean charge divided by mass (ζ), (2) relative range of CCS covered by all protonated molecules (ΔΩ/Ω) and (3) mean ion mobility peak width (δΩ). The data were first collected on a set of twenty one lasso peptides and eight branched-cyclic peptides. The indicators were obtained also for eight variants of the well-known lasso peptide MccJ25 obtained by site-directed mutagenesis and further extended to five linear peptides, two macrocyclic peptides and one disulfide constrained peptide. In all cases, a clear clustering was observed between constrained and unconstrained structures, thus providing a new strategy to discriminate mechanically interlocked topologies.

  7. Signatures of Mechanically Interlocked Topology of Lasso Peptides by Ion Mobility-Mass Spectrometry: Lessons from a Collection of Representatives

    Science.gov (United States)

    Fouque, Kevin Jeanne Dit; Lavanant, Hélène; Zirah, Séverine; Hegemann, Julian D.; Zimmermann, Marcel; Marahiel, Mohamed A.; Rebuffat, Sylvie; Afonso, Carlos

    2017-02-01

    Lasso peptides are characterized by a mechanically interlocked structure, where the C-terminal tail of the peptide is threaded and trapped within an N-terminal macrolactam ring. Their compact and stable structures have a significant impact on their biological and physical properties and make them highly interesting for drug development. Ion mobility - mass spectrometry (IM-MS) has shown to be effective to discriminate the lasso topology from their corresponding branched-cyclic topoisomers in which the C-terminal tail is unthreaded. In fact, previous comparison of the IM-MS data of the two topologies has yielded three trends that allow differentiation of the lasso fold from the branched-cyclic structure: (1) the low abundance of highly charged ions, (2) the low change in collision cross sections (CCS) with increasing charge state and (3) a narrow ion mobility peak width. In this study, a three-dimensional plot was generated using three indicators based on these three trends: (1) mean charge divided by mass (ζ), (2) relative range of CCS covered by all protonated molecules (ΔΩ/Ω) and (3) mean ion mobility peak width (δΩ). The data were first collected on a set of twenty one lasso peptides and eight branched-cyclic peptides. The indicators were obtained also for eight variants of the well-known lasso peptide MccJ25 obtained by site-directed mutagenesis and further extended to five linear peptides, two macrocyclic peptides and one disulfide constrained peptide. In all cases, a clear clustering was observed between constrained and unconstrained structures, thus providing a new strategy to discriminate mechanically interlocked topologies.

  8. Charge reversal Fourier transform ion cyclotron resonance mass spectrometry.

    Science.gov (United States)

    Lobodin, Vladislav V; Savory, Joshua J; Kaiser, Nathan K; Dunk, Paul W; Marshall, Alan G

    2013-02-01

    We report the first charge reversal experiments performed by tandem-in-time rather than tandem-in-space MS/MS. Precursor odd-electron anions from fullerene C(60), and even-electron ions from 2,7-di-tert-butylfluorene-9-carboxylic acid and 3,3'-bicarbazole were converted into positive product ions ((-)CR(+)) inside the magnet of a Fourier transform ion cyclotron resonance mass spectrometer. Charge reversal was activated by irradiating precursor ions with high energy electrons or UV photons: the first reported use of those activation methods for charge reversal. We suggest that high energy electrons achieve charge reversal in one step as double electron transfer, whereas UV-activated (-)CR(+) takes place stepwise through two single electron transfers and formally corresponds to a neutralization-reionization ((-)NR(+)) experiment.

  9. Production of High-Intensity, Highly Charged Ions

    CERN Document Server

    Gammino, S

    2013-01-01

    In the past three decades, the development of nuclear physics facilities for fundamental and applied science purposes has required an increasing current of multicharged ion beams. Multiple ionization implies the formation of dense and energetic plasmas, which, in turn, requires specific plasma trapping configurations. Two types of ion source have been able to produce very high charge states in a reliable and reproducible way: electron beam ion sources (EBIS) and electron cyclotron resonance ion sources (ECRIS). Multiple ionization is also obtained in laser-generated plasmas (laser ion sources (LIS)), where the high-energy electrons and the extremely high electron density allow step-by-step ionization, but the reproducibility is poor. This chapter discusses the atomic physics background at the basis of the production of highly charged ions and describes the scientific and technological features of the most advanced ion sources. Particular attention is paid to ECRIS and the latest developments, since they now r...

  10. Production of highly charged argon ions from a room temperature electron beam ion trap

    Institute of Scientific and Technical Information of China (English)

    WANG Tie-Shan; PENG Hai-Bo; Ovsyannikov V P; Kentsch U; Ullmann F; CHENG Rui; Zschornack G

    2008-01-01

    In this work.highly charged ions have been extracted from the advanced Electron Beam Ion Source (EBIS-A) developed in a scientific cooperation between the Dresden University of Technology and the DREEBIT GmbH Dresden.The charge state distributions of ions extracted from the EBIS-A are measured in and extracted in the leaky mode.3×105 Ar18+ ions per pulse are extracted in the pulse mode.The ion charge state distribution is a function of the ionization time.

  11. Charge Transfer and Ionization by Intermediate-Energy Heavy Ions

    Energy Technology Data Exchange (ETDEWEB)

    Toburen, L. H. [East Carolina University; McLawhorn, S. L. [East Carolina University; McLawhorn, R. A. [East Carolina University; Evans, N. L. [East Carolina University; Justiniano, E. L. B. [East Carolina University; Shinpaugh, J. L. [East Carolina University; Schultz, David Robert [ORNL; Reinhold, Carlos O [ORNL

    2006-11-01

    The use of heavy ion beams for microbeam studies of mammalian cell response leads to a need to better understand interaction cross sections for collisions of heavy ions with tissue constituents. For ion energies of a few MeV u-1 or less, ions capture electrons from the media in which they travel and undergo subsequent interactions as partially 'dressed' ions. For example, 16 MeV fluorine ions have an equilibrium charge of 7+, 32 MeV sulphur ions have an equilibrium charge of approx. 11+, and as the ion energies decrease the equilibrium charge decreases dramatically. Data for interactions of partially dressed ions are extremely rare, making it difficult to estimate microscopic patterns of energy deposition leading to damage to cellular components. Such estimates, normally obtained by Monte Carlo track structure simulations, require a comprehensive database of differential and total ionisation cross sections as well as charge transfer cross sections. To provide information for track simulation, measurement of total ionisation cross sections have been initiated at East Carolina University using the recoil ion time-of-flight method that also yields cross sections for multiple ionisation processes and charge transfer cross sections; multiple ionisation is prevalent for heavy ion interactions. In addition, measurements of differential ionisation cross sections needed for Monte Carlo simulation of detailed event-by-event particle tracks are under way. Differential, total and multiple ionisation cross sections and electron capture and loss cross sections measured for C+ ions with energies of 100 and 200 keV u-1 are described.

  12. Charge transfer and ionisation by intermediate-energy heavy ions.

    Science.gov (United States)

    Toburen, L H; McLawhorn, S L; McLawhorn, R A; Evans, N L; Justiniano, E L B; Shinpaugh, J L; Schultz, D R; Reinhold, C O

    2006-01-01

    The use of heavy ion beams for microbeam studies of mammalian cell response leads to a need to better understand interaction cross sections for collisions of heavy ions with tissue constituents. For ion energies of a few MeV u(-1) or less, ions capture electrons from the media in which they travel and undergo subsequent interactions as partially 'dressed' ions. For example, 16 MeV fluorine ions have an equilibrium charge of 7(+), 32 MeV sulphur ions have an equilibrium charge of approximately 11(+), and as the ion energies decrease the equilibrium charge decreases dramatically. Data for interactions of partially dressed ions are extremely rare, making it difficult to estimate microscopic patterns of energy deposition leading to damage to cellular components. Such estimates, normally obtained by Monte Carlo track structure simulations, require a comprehensive database of differential and total ionisation cross sections as well as charge transfer cross sections. To provide information for track simulation, measurement of total ionisation cross sections have been initiated at East Carolina University using the recoil ion time-of-flight method that also yields cross sections for multiple ionisation processes and charge transfer cross sections; multiple ionisation is prevalent for heavy ion interactions. In addition, measurements of differential ionisation cross sections needed for Monte Carlo simulation of detailed event-by-event particle tracks are under way. Differential, total and multiple ionisation cross sections and electron capture and loss cross sections measured for C(+) ions with energies of 100 and 200 keV u(-1) are described.

  13. Toward a Rational Design of Highly Folded Peptide Cation Conformations. 3D Gas-Phase Ion Structures and Ion Mobility Characterization

    Science.gov (United States)

    Pepin, Robert; Laszlo, Kenneth J.; Marek, Aleš; Peng, Bo; Bush, Matthew F.; Lavanant, Helène; Afonso, Carlos; Tureček, František

    2016-10-01

    Heptapeptide ions containing combinations of polar Lys, Arg, and Asp residues with non-polar Leu, Pro, Ala, and Gly residues were designed to study polar effects on gas-phase ion conformations. Doubly and triply charged ions were studied by ion mobility mass spectrometry and electron structure theory using correlated ab initio and density functional theory methods and found to exhibit tightly folded 3D structures in the gas phase. Manipulation of the basic residue positions in LKGPADR, LRGPADK, KLGPADR, and RLGPADK resulted in only minor changes in the ion collision cross sections in helium. Replacement of the Pro residue with Leu resulted in only marginally larger collision cross sections for the doubly and triply charged ions. Disruption of zwitterionic interactions in doubly charged ions was performed by converting the C-terminal and Asp carboxyl groups to methyl esters. This resulted in very minor changes in the collision cross sections of doubly charged ions and even slightly diminished collision cross sections in most triply charged ions. The experimental collision cross sections were related to those calculated for structures of lowest free energy ion conformers that were obtained by extensive search of the conformational space and fully optimized by density functional theory calculations. The predominant factors that affected ion structures and collision cross sections were due to attractive hydrogen bonding interactions and internal solvation of the charged groups that overcompensated their Coulomb repulsion. Structure features typically assigned to the Pro residue and zwitterionic COO-charged group interactions were only secondary in affecting the structures and collision cross sections of these gas-phase peptide ions.

  14. Toward a Rational Design of Highly Folded Peptide Cation Conformations. 3D Gas-Phase Ion Structures and Ion Mobility Characterization.

    Science.gov (United States)

    Pepin, Robert; Laszlo, Kenneth J; Marek, Aleš; Peng, Bo; Bush, Matthew F; Lavanant, Helène; Afonso, Carlos; Tureček, František

    2016-10-01

    Heptapeptide ions containing combinations of polar Lys, Arg, and Asp residues with non-polar Leu, Pro, Ala, and Gly residues were designed to study polar effects on gas-phase ion conformations. Doubly and triply charged ions were studied by ion mobility mass spectrometry and electron structure theory using correlated ab initio and density functional theory methods and found to exhibit tightly folded 3D structures in the gas phase. Manipulation of the basic residue positions in LKGPADR, LRGPADK, KLGPADR, and RLGPADK resulted in only minor changes in the ion collision cross sections in helium. Replacement of the Pro residue with Leu resulted in only marginally larger collision cross sections for the doubly and triply charged ions. Disruption of zwitterionic interactions in doubly charged ions was performed by converting the C-terminal and Asp carboxyl groups to methyl esters. This resulted in very minor changes in the collision cross sections of doubly charged ions and even slightly diminished collision cross sections in most triply charged ions. The experimental collision cross sections were related to those calculated for structures of lowest free energy ion conformers that were obtained by extensive search of the conformational space and fully optimized by density functional theory calculations. The predominant factors that affected ion structures and collision cross sections were due to attractive hydrogen bonding interactions and internal solvation of the charged groups that overcompensated their Coulomb repulsion. Structure features typically assigned to the Pro residue and zwitterionic COO-charged group interactions were only secondary in affecting the structures and collision cross sections of these gas-phase peptide ions. Graphical Abstract ᅟ.

  15. Charge-transfer spectra of tetravalent lanthanide ions in oxides

    NARCIS (Netherlands)

    Hoefdraad, H.E.

    1975-01-01

    The charge-transfer spectra of Ce4+, Pr4+ and Tb4+ in a number of oxides are reported. It is noted that the position of the first charge-transfer band is fixed for the metal ion in an oxygen coordination of VI, but varies in VIII coordination as a function of the host lattice. It is argued that this

  16. Collision phenomena involving highly-charged ions in astronomical objects

    Science.gov (United States)

    Chutjian, A.

    2001-01-01

    A description of the role of highly charged ions in various astronomical objects; includes the use of critical quantities such as cross sections for excitation, charge-exchange, X-ray emission, radiative recombination (RR) and dielectronic recombination (DR); and lifetimes, branching ratios, and A-values.

  17. A vacuum spark ion source: High charge state metal ion beams

    Science.gov (United States)

    Yushkov, G. Yu.; Nikolaev, A. G.; Oks, E. M.; Frolova, V. P.

    2016-02-01

    High ion charge state is often important in ion beam physics, among other reasons for the very practical purpose that it leads to proportionately higher ion beam energy for fixed accelerating voltage. The ion charge state of metal ion beams can be increased by replacing a vacuum arc ion source by a vacuum spark ion source. Since the voltage between anode and cathode remains high in a spark discharge compared to the vacuum arc, higher metal ion charge states are generated which can then be extracted as an ion beam. The use of a spark of pulse duration less than 10 μs and with current up to 10 kA allows the production of ion beams with current of several amperes at a pulse repetition rate of up to 5 pps. We have demonstrated the formation of high charge state heavy ions (bismuth) of up to 15 + and a mean ion charge state of more than 10 +. The physics and techniques of our vacuum spark ion source are described.

  18. A vacuum spark ion source: High charge state metal ion beams

    Energy Technology Data Exchange (ETDEWEB)

    Yushkov, G. Yu., E-mail: gyushkov@mail.ru; Nikolaev, A. G.; Frolova, V. P. [High Current Electronics Institute, Siberian Branch of the Russian Academy of Science, Tomsk 634055 (Russian Federation); Oks, E. M. [High Current Electronics Institute, Siberian Branch of the Russian Academy of Science, Tomsk 634055 (Russian Federation); Tomsk State University of Control System and Radioelectronics, Tomsk 634050 (Russian Federation)

    2016-02-15

    High ion charge state is often important in ion beam physics, among other reasons for the very practical purpose that it leads to proportionately higher ion beam energy for fixed accelerating voltage. The ion charge state of metal ion beams can be increased by replacing a vacuum arc ion source by a vacuum spark ion source. Since the voltage between anode and cathode remains high in a spark discharge compared to the vacuum arc, higher metal ion charge states are generated which can then be extracted as an ion beam. The use of a spark of pulse duration less than 10 μs and with current up to 10 kA allows the production of ion beams with current of several amperes at a pulse repetition rate of up to 5 pps. We have demonstrated the formation of high charge state heavy ions (bismuth) of up to 15 + and a mean ion charge state of more than 10 +. The physics and techniques of our vacuum spark ion source are described.

  19. A compact source for bunches of singly charged atomic ions

    Science.gov (United States)

    Murböck, T.; Schmidt, S.; Andelkovic, Z.; Birkl, G.; Nörtershäuser, W.; Vogel, M.

    2016-04-01

    We have built, operated, and characterized a compact ion source for low-energy bunches of singly charged atomic ions in a vacuum beam line. It is based on atomic evaporation from an electrically heated oven and ionization by electron impact from a heated filament inside a grid-based ionization volume. An adjacent electrode arrangement is used for ion extraction and focusing by applying positive high-voltage pulses to the grid. The method is particularly suited for experimental environments which require low electromagnetic noise. It has proven simple yet reliable and has been used to produce μs-bunches of up to 106 Mg+ ions at a repetition rate of 1 Hz. We present the concept, setup and characterizing measurements. The instrument has been operated in the framework of the SpecTrap experiment at the HITRAP facility at GSI/FAIR to provide Mg+ ions for sympathetic cooling of highly charged ions by laser-cooled 24Mg+.

  20. Cryogenic linear Paul trap for cold highly charged ion experiments.

    Science.gov (United States)

    Schwarz, M; Versolato, O O; Windberger, A; Brunner, F R; Ballance, T; Eberle, S N; Ullrich, J; Schmidt, P O; Hansen, A K; Gingell, A D; Drewsen, M; López-Urrutia, J R Crespo

    2012-08-01

    Storage and cooling of highly charged ions require ultra-high vacuum levels obtainable by means of cryogenic methods. We have developed a linear Paul trap operating at 4 K capable of very long ion storage times of about 30 h. A conservative upper bound of the H(2) partial pressure of about 10(-15) mbar (at 4 K) is obtained from this. External ion injection is possible and optimized optical access for lasers is provided, while exposure to black body radiation is minimized. First results of its operation with atomic and molecular ions are presented. An all-solid state laser system at 313 nm has been set up to provide cold Be(+) ions for sympathetic cooling of highly charged ions.

  1. Charge-state-dependent energy loss of slow ions. I. Experimental results on the transmission of highly charged ions

    Science.gov (United States)

    Wilhelm, Richard A.; Gruber, Elisabeth; Smejkal, Valerie; Facsko, Stefan; Aumayr, Friedrich

    2016-05-01

    We report on energy loss measurements of slow (v ≪v0 ), highly charged (Q >10 ) ions upon transmission through a 1-nm-thick carbon nanomembrane. We emphasize here the scaling of the energy loss with the velocity and charge exchange or loss. We show that a weak linear velocity dependence exists, whereas charge exchange dominates the kinetic energy loss, especially in the case of a large charge capture. A universal scaling of the energy loss with the charge exchange and velocity is found and discussed in this paper. A model for charge-state-dependent energy loss for slow ions is presented in paper II in this series [R. A. Wilhelm and W. Möller, Phys. Rev. A 93, 052709 (2016), 10.1103/PhysRevA.93.052709].

  2. Stopping power of charged particles due to ion wave excitations

    Science.gov (United States)

    Nitta, H.; Muroki, C.; Nambu, M.

    2002-08-01

    Stopping power due to ion wave excitations is derived for a charged particle moving in a two-component plasma. Unlike previous theories based on ion-acoustic-wave approximation (IAWA), the excitation of short-wavelength ion waves is taken into account. The obtained stopping power has a magnitude larger than that of IAWA. Stopping power at subsonic velocities, where stopping power in IAWA disappears, is even larger than that of supersonic velocities.

  3. Stopping power of charged particles due to ion wave excitations.

    Science.gov (United States)

    Nitta, H; Muroki, C; Nambu, M

    2002-08-01

    Stopping power due to ion wave excitations is derived for a charged particle moving in a two-component plasma. Unlike previous theories based on ion-acoustic-wave approximation (IAWA), the excitation of short-wavelength ion waves is taken into account. The obtained stopping power has a magnitude larger than that of IAWA. Stopping power at subsonic velocities, where stopping power in IAWA disappears, is even larger than that of supersonic velocities.

  4. Production of High-Intensity, Highly Charged Ions

    OpenAIRE

    S. GamminoINFN, LNS, Catania

    2014-01-01

    In the past three decades, the development of nuclear physics facilities for fundamental and applied science purposes has required an increasing current of multicharged ion beams. Multiple ionization implies the formation of dense and energetic plasmas, which, in turn, requires specific plasma trapping configurations. Two types of ion source have been able to produce very high charge states in a reliable and reproducible way: electron beam ion sources (EBIS) and electron cyc...

  5. Reducing Space Charge Effects in a Linear Ion Trap by Rhombic Ion Excitation and Ejection

    Science.gov (United States)

    Zhang, Xiaohua; Wang, Yuzhuo; Hu, Lili; Guo, Dan; Fang, Xiang; Zhou, Mingfei; Xu, Wei

    2016-07-01

    Space charge effects play important roles in ion trap operations, which typically limit the ion trapping capacity, dynamic range, mass accuracy, and resolving power of a quadrupole ion trap. In this study, a rhombic ion excitation and ejection method was proposed to minimize space charge effects in a linear ion trap. Instead of applying a single dipolar AC excitation signal, two dipolar AC excitation signals with the same frequency and amplitude but 90° phase difference were applied in the x- and y-directions of the linear ion trap, respectively. As a result, mass selective excited ions would circle around the ion cloud located at the center of the ion trap, rather than go through the ion cloud. In this work, excited ions were then axially ejected and detected, but this rhombic ion excitation method could also be applied to linear ion traps with ion radial ejection capabilities. Experiments show that space charge induced mass resolution degradation and mass shift could be alleviated with this method. For the experimental conditions in this work, space charge induced mass shift could be decreased by ~50%, and the mass resolving power could be improved by ~2 times at the same time.

  6. Characterization of the internal ion environment of biofilms based on charge density and shape of ion.

    Science.gov (United States)

    Kurniawan, Andi; Tsuchiya, Yuki; Eda, Shima; Morisaki, Hisao

    2015-12-01

    Biofilm polymers contain both electrically positively and negatively charged sites. These charged sites enable the biofilm to trap and retain ions leading to an important role of biofilm such as nutrient recycling and pollutant purification. Much work has focused on the ion-exchange capacity of biofilms, and they are known to adsorb ions through an exchange mechanism between the ions in solution and the ions adsorbed to the charged sites on the biofilm polymer. However, recent studies suggest that the adsorption/desorption behavior of ions in a biofilm cannot be explained solely by this ion exchange mechanism. To examine the possibility that a substantial amount of ions are held in the interstitial region of the biofilm polymer by an electrostatic interaction, intact biofilms formed in a natural environment were immersed in distilled water and ion desorption was investigated. All of the detected ion species were released from the biofilms over a short period of time, and very few ions were subsequently released over more time, indicating that the interstitial region of biofilm polymers is another ion reserve. The extent of ion retention in the interstitial region of biofilms for each ion can be determined largely by charge density, |Z|/r, where |Z| is the ion valence as absolute value and r is the ion radius. The higher |Z|/r value an ion has, the stronger it is retained in the interstitial region of biofilms. Ion shape is also a key determinant of ion retention. Spherical and non-spherical ions have different correlations between the condensation ratio and |Z|/r. The generality of these findings were assured by various biofilm samples. Thus, the internal regions of biofilms exchange ions dynamically with the outside environment.

  7. Measurement of Metastable Lifetimes of Highly-Charged Ions

    Science.gov (United States)

    Smith, Steven J.; Chutjian, A.; Lozano, J.

    2002-01-01

    The present work is part of a series of measurements of metastable lifetimes of highly-charged ions (HCIs) which contribute to optical absorption, emission and energy balance in the Interstellar Medium (ISM), stellar atmospheres, etc. Measurements were carried out using the 14-GHz electron cyclotron resonance ion source (ECRIS) at the JPL HCI facility. The ECR provides useful currents of charge states such as C(sup(1-6)+), Mg(sup(1-6)+) and Fe(sup(1-17)+). In this work the HCI beam is focused into a Kingdon electrostatic ion trap for measuring lifetimes via optical decays.

  8. Solar photovoltaic charging of lithium-ion batteries

    Science.gov (United States)

    Gibson, Thomas L.; Kelly, Nelson A.

    Solar photovoltaic (PV) charging of batteries was tested by using high efficiency crystalline and amorphous silicon PV modules to recharge lithium-ion battery modules. This testing was performed as a proof of concept for solar PV charging of batteries for electrically powered vehicles. The iron phosphate type lithium-ion batteries were safely charged to their maximum capacity and the thermal hazards associated with overcharging were avoided by the self-regulating design of the solar charging system. The solar energy to battery charge conversion efficiency reached 14.5%, including a PV system efficiency of nearly 15%, and a battery charging efficiency of approximately 100%. This high system efficiency was achieved by directly charging the battery from the PV system with no intervening electronics, and matching the PV maximum power point voltage to the battery charging voltage at the desired maximum state of charge for the battery. It is envisioned that individual homeowners could charge electric and extended-range electric vehicles from residential, roof-mounted solar arrays, and thus power their daily commuting with clean, renewable solar energy.

  9. Artificial transmembrane ion channels from self-assembling peptide nanotubes

    Science.gov (United States)

    Ghadiri, M. Reza; Granja, Juan R.; Buehler, Lukas K.

    1994-05-01

    NATURALLY occurring membrane channels and pores are formed from a large family of diverse proteins, peptides and organic secon-dary metabolites whose vital biological functions include control of ion flow, signal transduction, molecular transport and produc-tion of cellular toxins. But despite the availability of a large amount of biochemical information about these molecules1, the design and synthesis of artificial systems that can mimic the bio-logical function of natural compounds remains a formidable task2-12. Here we present a simple strategy for the design of artifi-cial membrane ion channels based on a self-assembled cylindrical β-sheet peptide architecture13. Our systems-essentially stacks of peptide rings-display good channel-mediated ion-transport activ-ity with rates exceeding 107 ions s-1, rivalling the performance of many naturally occurring counterparts. Such molecular assemblies should find use in the design of novel cytotoxic agents, membrane transport vehicles and drug-delivery systems.

  10. Charge exchange and energy loss of slow highly charged ions in 1 nm thick carbon nanomembranes.

    Science.gov (United States)

    Wilhelm, Richard A; Gruber, Elisabeth; Ritter, Robert; Heller, René; Facsko, Stefan; Aumayr, Friedrich

    2014-04-18

    Experimental charge exchange and energy loss data for the transmission of slow highly charged Xe ions through ultrathin polymeric carbon membranes are presented. Surprisingly, two distinct exit charge state distributions accompanied by charge exchange dependent energy losses are observed. The energy loss for ions exhibiting large charge loss shows a quadratic dependency on the incident charge state indicating that equilibrium stopping force values do not apply in this case. Additional angle resolved transmission measurements point on a significant contribution of elastic energy loss. The observations show that regimes of different impact parameters can be separated and thus a particle's energy deposition in an ultrathin solid target may not be described in terms of an averaged energy loss per unit length.

  11. Absolute cross sections for charge capture from Rydberg targets by slow highly charged ions

    Energy Technology Data Exchange (ETDEWEB)

    DePaola, B.D.; Huang, M.; Winecki, S.; Stoeckli, M.P.; Kanai, Y. [J. R. Macdonald Laboratory, Kansas State University, Manhattan, Kansas 66506 (United States); Lundeen, S.R.; Fehrenbach, C.W.; Arko, S.A. [Department of Physics, Colorado State University, Fort Collins, Colorado 80523 (United States)

    1995-09-01

    A crossed beam experiment has been used to measure absolute charge capture cross sections in collisions of slow highly charged xenon ions with laser excited Rydberg atoms. The cross sections were measured for scaled projectile velocities {ital nv}{sub {ital p}} from 1.0 to 6.0, for projectile charges of 8, 16, 32, and 40, where {ital n} is the principal quantum number of the target electron. Experimental cross sections are compared with predictions of classical models.

  12. Adsorption of Potassium and Calcium Ions by Variable Charge Soils

    Institute of Scientific and Technical Information of China (English)

    LIHONG-YAN; JIGUO-LIANG

    1992-01-01

    Interactions of potassium and calcium ions with four typical variable charge soils in South China were examined by measuring pK-0.5pCa value with a potassium ion-selective electrode and a calcium ion-selective electrode,and pK value with a potassium ion-selective electrode.The results showed that adsorption of potassium and calcium ions increased with soil suspension pH,and the tendency of the pK-0.5pCa value changing with pH differed with respect to pH range and potassium to calcium ratio.Adsorption of equal amount of calcium and potassium ions led to release of an identical number of protons,suggesting similar adsorption characteristics of these two ions when adsorbed by variable charge soils.Compared with red soil,latosol and lateritic red soil had higher adsorption selectivities for calcium ion.The red soil had a greater affinity for potassium ion than that for calcium ion at low concentration,which seems to result from its possession of 2:1 type minerals,such as vermiculite and mica with a high affinity for potassium ion.The results indicated that adsorption of potassium and calcium ions by the variable charge soils was chiefly caused by the electrostatic attraction between the cations and the soil surfaces.Moreover,it was found that sulfate could affect the adsorption by changing soil surface properties and by forming ion-pair.

  13. A New Technique for Diagnosing Multi-charged Ion Beams Produced by ECR Ion Source

    Institute of Scientific and Technical Information of China (English)

    ZhangZimin; ZhaoHongwei; CaoYun; MaLei; MaBaohua; LiJinyu; WangHui; FengYucheng; DuJunfeng

    2003-01-01

    In order to study the transmission properties of multi-charged ion beams between the ECR ion source and the analyzing magnet, a new diagnostic system composed of three Wien-filters with three single-wires has been built and installed on the IMP ECR source test bcnch. The single-wire is used to measure the beam profile and the beam density distribution, and the Wien-filter is used to measure the charge state distribution of ion beam.

  14. Low-energy state-selective charge transfer by multiply charged ions

    NARCIS (Netherlands)

    Lubinski, G; Juhasz, Z; Morgenstern, R; Hoekstra, R

    2001-01-01

    We present a combined rf-guided ion beam and photon emission spectroscopy method, which facilitates state-selective charge-transfer measurements at energies of direct relevance for astrophysics and fusion-plasma diagnostics and modeling. Ion energies have been varied from 1000 eV/amu down to energie

  15. Adsorption of Potassium and Sodium Ions by Variable Charge Soils

    Institute of Scientific and Technical Information of China (English)

    LIHONG-YAN; JIGUO-LIANG

    1992-01-01

    Adsorption of potassium and sodium ions by four typical variable charge soils of South China was studied.The results indicated that the variable charge soils saturated with H and Al showed a much higher preference for potassium ions relative to sodium ions,and this tendence could not be changed by such factors as the pH,the concentration of the cations,the dielectric constant of solvent,the accompanying anions and the iron oxide content etc.,suggesting that this difference in affinity is caused by the difference in the nature of the two cations.It was observed that a negative adsorption of sodium ions by latosol and lateritic red soil in a mixed system containing equal amount of potassium and sodium ions at low pH,which is caused by a competitive adsorption of potassium and sodium ions and repulsion of positive charge on the surfaces of soil particles for cations.The adsorption of potassium and sodium ions increased with the decreases in the dielectric constant of solvent and the iron oxide content.Sulfate affected the adsorption of potassium and sodium ions through changing the surface properties of the soils.

  16. Study on space charge compensation in negative hydrogen ion beam.

    Science.gov (United States)

    Zhang, A L; Peng, S X; Ren, H T; Zhang, T; Zhang, J F; Xu, Y; Guo, Z Y; Chen, J E

    2016-02-01

    Negative hydrogen ion beam can be compensated by the trapping of ions into the beam potential. When the beam propagates through a neutral gas, these ions arise due to gas ionization by the beam ions. However, the high neutral gas pressure may cause serious negative hydrogen ion beam loss, while low neutral gas pressure may lead to ion-ion instability and decompensation. To better understand the space charge compensation processes within a negative hydrogen beam, experimental study and numerical simulation were carried out at Peking University (PKU). The simulation code for negative hydrogen ion beam is improved from a 2D particle-in-cell-Monte Carlo collision code which has been successfully applied to H(+) beam compensated with Ar gas. Impacts among ions, electrons, and neutral gases in negative hydrogen beam compensation processes are carefully treated. The results of the beam simulations were compared with current and emittance measurements of an H(-) beam from a 2.45 GHz microwave driven H(-) ion source in PKU. Compensation gas was injected directly into the beam transport region to modify the space charge compensation degree. The experimental results were in good agreement with the simulation results.

  17. Study on space charge compensation in negative hydrogen ion beam

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, A. L.; Chen, J. E. [University of Chinese Academy of Sciences, Beijing 100049 (China); State Key Laboratory of Nuclear Physics and Technology, Institute of Heavy Ion Physics, School of Physics, Peking University, Beijing 100871 (China); Peng, S. X., E-mail: sxpeng@pku.edu.cn; Ren, H. T.; Zhang, T.; Zhang, J. F.; Xu, Y.; Guo, Z. Y. [State Key Laboratory of Nuclear Physics and Technology, Institute of Heavy Ion Physics, School of Physics, Peking University, Beijing 100871 (China)

    2016-02-15

    Negative hydrogen ion beam can be compensated by the trapping of ions into the beam potential. When the beam propagates through a neutral gas, these ions arise due to gas ionization by the beam ions. However, the high neutral gas pressure may cause serious negative hydrogen ion beam loss, while low neutral gas pressure may lead to ion-ion instability and decompensation. To better understand the space charge compensation processes within a negative hydrogen beam, experimental study and numerical simulation were carried out at Peking University (PKU). The simulation code for negative hydrogen ion beam is improved from a 2D particle-in-cell-Monte Carlo collision code which has been successfully applied to H{sup +} beam compensated with Ar gas. Impacts among ions, electrons, and neutral gases in negative hydrogen beam compensation processes are carefully treated. The results of the beam simulations were compared with current and emittance measurements of an H{sup −} beam from a 2.45 GHz microwave driven H{sup −} ion source in PKU. Compensation gas was injected directly into the beam transport region to modify the space charge compensation degree. The experimental results were in good agreement with the simulation results.

  18. Charge state distribution analysis of Al and Pb ions from the laser ion source at IMP

    CERN Document Server

    Shan, Sha; Zhang-Min, Li; Xiao-Hong, Guo; Lun-Cai, Zhou; Guo-Zhu, Cai; Liang-ting, Sun; Xue-Zhen, Zhang; Huan-Yu, Zhao; Xi-Meng, Chen; Hong-Wei, Zhao

    2013-01-01

    A prototype laser ion source that could demonstrate the possibility of producing intense pulsed high charge state ion beams has been established with a commercial Nd:YAG laser (E max = 3 J, 1064 nm, 8-10 ns) to produce laser plasma for the research of Laser Ion Source (LIS). At the laser ion source test bench, high purity (99.998 %) aluminum and lead targets have been tested for laser plasma experiment. An Electrostatic Ion Analyzer (EIA) and Electron Multiply Tube (EMT) detector were used to analyze the charge state and energy distribution of the ions produced by the laser ion source. The maximum charge states of Al12+ and Pb7+ were achieved. The results will be presented and discussed in this paper.

  19. Atomic physics with highly charged ions

    Energy Technology Data Exchange (ETDEWEB)

    Richard, P.

    1991-08-01

    This report discusses: One electron outer shell processes in fast ion-atom collisions; role of electron-electron interaction in two-electron processes; multi-electron processes at low energy; multi-electron processes at high energy; inner shell processes; molecular fragmentation studies; theory; and, JRM laboratory operations.

  20. High Intensity High Charge State ECR Ion Sources

    CERN Document Server

    Leitner, Daniela

    2005-01-01

    The next-generation heavy ion beam accelerators such as the proposed Rare Isotope Accelerator (RIA), the Radioactive Ion Beam Factory at RIKEN, the GSI upgrade project, the LHC-upgrade, and IMP in Lanzhou require a great variety of high charge state ion beams with a magnitude higher beam intensity than currently achievable. High performance Electron Cyclotron Resonance (ECR) ion sources can provide the flexibility since they can routinely produce beams from hydrogen to uranium. Over the last three decades, ECR ion sources have continued improving the available ion beam intensities by increasing the magnetic fields and ECR heating frequencies to enhance the confinement and the plasma density. With advances in superconducting magnet technology, a new generation of high field superconducting sources is now emerging, designed to meet the requirements of these next generation accelerator projects. The talk will briefly review the field of high performance ECR ion sources and the latest developments for high intens...

  1. Size-to-charge dispersion of collision-induced dissociation product ions for enhancement of structural information and product ion identification.

    Science.gov (United States)

    Zinnel, Nathanael F; Russell, David H

    2014-05-20

    Ion mobility is used to disperse product ions formed by collision-induced dissociation (CID) on the basis of charge state and size-to-charge ratio. We previously described an approach for combining CID with ion mobility mass spectrometry (IM-MS) for dispersing fragment ions along charge state specific trend lines (Zinnel, N. F.; Pai, P. J.; Russell, D. H. Anal. Chem. 2012, 84, 3390; Sowell, R. A.; Koeniger, S. L.; Valentine, S. J.; Moon, M. H.; Clemmer, D. E. J. Am. Soc. Mass Spectrom. 2004, 15, 1341; McLean, J. A.; Ruotolo, B. T.; Gillig, K. J.; Russell, D. H. Int. J. Mass Spectrom. 2005, 240, 301), and this approach was used to assign metal ion binding sites for human metallothionein protein MT-2a (Chen, S. H.; Russell, W. K.; Russell, D. H. Anal. Chem. 2013, 85, 3229). Here, we use this approach to distinguish b-type N-terminal fragment ions from both internal fragment ions and y-type C-terminal fragment ions. We also show that in some cases specific secondary structural elements, viz., extended coils or helices, can be obtained for the y-type fragment ions series. The advantage of this approach is that product ion identity can be correlated to gas-phase ion structure, which provides rapid identification of the onset and termination of extended coil structure in peptides.

  2. Adsorption of insulin peptide on charged single-walled carbon nanotubes: significant role of ordered water molecules.

    Science.gov (United States)

    Shen, Jia-Wei; Wu, Tao; Wang, Qi; Kang, Yu; Chen, Xin

    2009-06-02

    Ordered hydration shells: The more ordered hydration shells outside the charged CNT surfaces prevent more compact adsorption of the peptide in the charged CNT systems [picture: see text], but peptide binding strengths on the charged CNT surfaces are stronger due to the electrostatic interaction.Studies of adsorption dynamics and stability for peptides/proteins on single-walled carbon nanotubes (SWNTs) are of great importance for a better understanding of the properties and nature of nanotube-based biosystems. Herein, the dynamics and mechanism of the adsorption of the insulin chain B peptide on different charged SWNTs are investigated by explicit solvent molecular dynamics simulations. The results show that all types of surfaces effectively attract the model peptide. Water molecules play a significant role in peptide adsorption on the surfaces of charged carbon nanotubes (CNTs). Compared to peptide adsorption on neutral CNT surfaces, the more ordered hydration shells outside the tube prevent more compact adsorption of the peptide in charged CNT systems. This shield effect leads to a smaller conformational change and van der Waals interaction between the peptide and surfaces, but peptide binding strengths on charged CNT surfaces are stronger than those on the neutral CNT surface due to the strong electrostatic interaction. The result of these simulations implies the possibility of improving the binding strength of peptides/proteins on CNT surfaces, as well as keeping the integrity of the peptide/protein conformation in peptide/protein-CNT complexes by charging the CNTs.

  3. Parity nonconservation in dielectronic recombination of multiply charged ions

    CERN Document Server

    Kozlov, M G; Currell, F J

    2007-01-01

    We discuss a parity nonconserving (PNC) asymmetry in the cross section of dielectronic recombination of polarized electrons on multiply charged ions with Z>40. This effect is strongly enhanced for close doubly-excited states of opposite parity in the intermediate compound ion. Such states are known for He-like ions. However, these levels have large energy and large radiative widths which hampers observation of the PNC asymmetry. We argue that accidentally degenerate states of the more complex ions may be more suitable for the corresponding experiment.

  4. Interrelationships among biological activity, disulfide bonds, secondary structure, and metal ion binding for a chemically synthesized 34-amino-acid peptide derived from alpha-fetoprotein.

    Science.gov (United States)

    MacColl, R; Eisele, L E; Stack, R F; Hauer, C; Vakharia, D D; Benno, A; Kelly, W C; Mizejewski, G J

    2001-10-01

    A 34-amino-acid peptide has been chemically synthesized based on a sequence from human alpha-fetoprotein. The purified peptide is active in anti-growth assays when freshly prepared in pH 7.4 buffer at 0.20 g/l, but this peptide slowly becomes inactive. This functional change is proven by mass spectrometry to be triggered by the formation of an intrapeptide disulfide bond between the two cysteine residues on the peptide. Interpeptide cross-linking does not occur. The active and inactive forms of the peptide have almost identical secondary structures as shown by circular dichroism (CD). Zinc ions bind to the active peptide and completely prevents formation of the inactive form. Cobalt(II) ions also bind to the peptide, and the UV-Vis absorption spectrum of the cobalt-peptide complex shows that: (1) a near-UV sulfur-to-metal-ion charge-transfer band had a molar extinction coefficient consistent with two thiolate bonds to Co(II); (2) the lowest-energy visible d-d transition maximum at 659 nm, also, demonstrated that the two cysteine residues are ligands for the metal ion; (3) the d-d molar extinction coefficient showed that the metal ion-ligand complex was in a distorted tetrahedral symmetry. The peptide has two cysteines, and it is speculated that the other two metal ion ligands might be the two histidines. The Zn(II)- and Co(II)-peptide complexes had similar peptide conformations as indicated by their ultraviolet CD spectra, which differed very slightly from that of the free peptide. Surprisingly, the cobalt ions acted in the reverse of the zinc ions in that, instead of stabilizing anti-growth form of the peptide, they catalyzed its loss. Metal ion control of peptide function is a saliently interesting concept. Calcium ions, in the conditions studied, apparently do not bind to the peptide. Trifluoroethanol and temperature (60 degrees C) affected the secondary structure of the peptide, and the peptide was found capable of assuming various conformations in solution

  5. Engineering Short Preorganized Peptide Sequences for Metal Ion Coordination: Copper(II) a Case Study.

    Science.gov (United States)

    Lima, L M P; Iranzo, O

    2016-01-01

    Peptides are multidentate chiral ligands capable of coordinating different metal ions. Nowadays, they can be obtained with high yield and purity, thanks to the advances on peptide/protein chemistry as well as in equipment (peptide synthesizers). Based on the identity and length of their amino acid sequences, peptides can present different degrees of flexibility and folding. Although short peptide sequences (ion coordination. Based on our experience, we present a general scheme for the design, synthesis, and characterization of these peptidic scaffolds and provide protocols for the study of their metal ion coordination properties.

  6. Emission of ions and charged soot particles by aircraft engines

    Directory of Open Access Journals (Sweden)

    A. Sorokin

    2003-01-01

    Full Text Available In this article, a model which examines the formation and evolution of chemiions in an aircraft engine is proposed. This model which includes chemiionisation, electron thermo-emission, electron attachment to soot particles and to neutral molecules, electron-ion and ion-ion recombination, ion-soot interaction, allows the determination of the ion concentration at the exit of the combustor and at the nozzle exit of the engine. It also allows the determination of the charge of the soot particles. For the engine considered, the upper limit for the ion emission index EIi is of the order of (2-5 x1016 ions/kg-fuel if ion-soot interactions are ignored and the introduction of ion-soot interactions lead about to a 50% reduction. The results also show that most of the soot particles are either positively or negatively charged, the remaining neutral particles representing approximately 20% of the total particles. A comparison of the model results with the available ground-based experimental data obtained on the ATTAS research aircraft engines during the SULFUR experiments (Schumann, 2002 shows an excellent agreement.

  7. Electrochemical model based charge optimization for lithium-ion batteries

    Science.gov (United States)

    Pramanik, Sourav; Anwar, Sohel

    2016-05-01

    In this paper, we propose the design of a novel optimal strategy for charging the lithium-ion battery based on electrochemical battery model that is aimed at improved performance. A performance index that aims at minimizing the charging effort along with a minimum deviation from the rated maximum thresholds for cell temperature and charging current has been defined. The method proposed in this paper aims at achieving a faster charging rate while maintaining safe limits for various battery parameters. Safe operation of the battery is achieved by including the battery bulk temperature as a control component in the performance index which is of critical importance for electric vehicles. Another important aspect of the performance objective proposed here is the efficiency of the algorithm that would allow higher charging rates without compromising the internal electrochemical kinetics of the battery which would prevent abusive conditions, thereby improving the long term durability. A more realistic model, based on battery electro-chemistry has been used for the design of the optimal algorithm as opposed to the conventional equivalent circuit models. To solve the optimization problem, Pontryagins principle has been used which is very effective for constrained optimization problems with both state and input constraints. Simulation results show that the proposed optimal charging algorithm is capable of shortening the charging time of a lithium ion cell while maintaining the temperature constraint when compared with the standard constant current charging. The designed method also maintains the internal states within limits that can avoid abusive operating conditions.

  8. Electrokinetic inversion of ion screening charges in nano-channels

    CERN Document Server

    Zhu, Xin; Ni, Sheng; Zhang, Xingye; Liu, Yang

    2016-01-01

    This work studies a counter-intuitive but basic process of ionic screening in nano-fluidic channels. Numerical simulations and perturbation analysis reveal that, under significant electrokinetic transport, the ion screening charges can be locally inverted in the channels: their charge sign becomes the same as that of the channel surface charges. The process is identified to originate from the coupling of longitudinal transport and junction electrostatics. This finding may revise the common understanding of ionic screening in nano-channels and indicates that their ion selectivity can be locally changed by transport. Furthermore, the charge inversion process results in a body force torque on channel fluids, which is a possible mechanism for vortex generation in the channels.

  9. Controlled charge exchange between alkaline earth metals and their ions

    Science.gov (United States)

    Gacesa, Marko; Côté, Robin

    2015-05-01

    We theoretically investigate the prospects of realizing controlled charge exchange via magnetic Feshbach resonances in cold and ultracold collisions of atoms and ions. In particular, we focus on near-resonant charge exchange in heteroisotopic combinations of alkaline earth metals, such as 9Be++10 Be9 Be+10Be+ , which exhibit favorable electronic and hyperfine structure. The quantum scattering calculations are performed for a range of initial states and experimentally attainable magnetic fields in standard coupled-channel Feshbach projection formalism, where higher-order corrections such as the mass-polarization term are explicitely included. In addition, we predict a number of magnetic Feshbach resonances for different heteronuclear isotopic combinations of the listed and related alkaline earth elements. Our results imply that near-resonant charge-exchange could be used to realize atom-ion quantum gates, as well as controlled charge transfer in optically trapped cold quantum gases. This work is partially supported by ARO.

  10. Charge Breeding and Production of Multiply Charged Ions in EBIS and ECRIS

    CERN Document Server

    Wenander, Frederik J C

    2001-01-01

    The REXEBIS is an Electron Beam Ion Source (EBIS) developed for charge breeding of the exotic and sometimes short-lived isotopes that are produced at ISOLDE for the REX-ISOLDE post accelerator. Bunches of singly charged radioactive ions are injected into the EBIS and charge bred to a charge-to-mass ratio of approximately ¼, and thereafter extracted and injected into a short 3-stage LINAC for acceleration to a few MeV/u. This novel concept, employing a Penning trap to bunch and cool the ions from an on-line mass separator in combination with a charge breeding EBIS, should result in an efficient and compact system. The REXEBIS is based on a 0.5 A electron beam produced in the fringe field of a magnetic solenoid, and compressed to a current density of >200 A/cm2. The 2 T magnetic field is provided by a warm-bore superconducting solenoid, thus giving easy accessibility but no cryogenic pumping. The EBIS is switched between 60 kV (ion injection) and ~20 kV (ion extraction). This thesis presents the design and con...

  11. Charge Effect on the Quantum Dots-Peptide Self-Assembly Using Fluorescence Coupled Capillary Electrophoresis.

    Science.gov (United States)

    Wang, Jianhao; Li, Jingyan; Teng, Yiwan; Bi, Yanhua; Hu, Wei; Li, Jinchen; Wang, Cheli; Qiu, Lin; Jiang, Pengju

    2016-04-01

    We present a molecular characterization of metal-affinity driven self-assembly between CdSe-ZnS quantum dots and a series of hexahistidine peptides with different charges. In particular, we uti- lized fluorescence coupled capillary electrophoresis to test the self-assembly process of quantum dots with peptides in solution. Four peptides with different charges can be efficiently separated by fluorescence coupled capillary electrophoresis. The migration time appeared to be influenced by the charges of the peptide. In addition, the kinetics of self-assembly process of quantum dots with one of the peptides manifested a bi-phasic kinetics followed by a saturating stage. This work revealed that there exist two types of binding sites on the surface of quantum dots for peptide 1: one type termed "high priority" binding site and a "low priority" site which is occupied after the first binding sites are fully occupied. The total self-assembly process finishes in solution within 80 s. Our work represents the systematic investigation of the details of self-assembly kinetics utilizing high-resolution fluorescence coupled capillary electrophoresis. The charge effect of peptide coating quantum dots provides a new way of preparing bioprobes.

  12. Matrix-assisted laser desorption/ionization mass spectrometry method for selectively producing either singly or multiply charged molecular ions.

    Science.gov (United States)

    Trimpin, Sarah; Inutan, Ellen D; Herath, Thushani N; McEwen, Charles N

    2010-01-01

    Matrix-assisted laser desorption/ionization (MALDI) mass spectrometry (MS) is noted for its ability to produce primarily singly charged ions. This is an attribute when using direct ionization for complex mixtures such as protein digests or synthetic polymers. However, the ability to produce multiply charged ions, as with electrospray ionization (ESI), has advantages such as extending the mass range on mass spectrometers with limited mass-to-charge (m/z) range and enhancing fragmentation for structural characterization. We designed and fabricated a novel field free transmission geometry atmopsheric pressure (AP) MALDI source mounted to a high-mass resolution Orbitrap Exactive mass spectrometer. We report the ability to produce at will either singly charged ions or highly charged ions using a MALDI process by simply changing the matrix or the matrix preparation conditions. Mass spectra with multiply charged ions very similar to those obtained with ESI of proteins such as cytochrome c and ubiquitin are obtained with low femtomole amounts applied to the MALDI target plate and for peptides such as angiotensin I and II with application of attomole amounts. Single scan acquisitions produce sufficient ion current even from proteins.

  13. Atomic physics with highly charged ions. Progress report

    Energy Technology Data Exchange (ETDEWEB)

    Richard, P.

    1994-08-01

    The study of inelastic collision phenomena with highly charged projectile ions and the interpretation of spectral features resulting from these collisions remain as the major focal points in the atomic physics research at the J.R. Macdonald Laboratory, Kansas State University, Manhattan, Kansas. The title of the research project, ``Atomic Physics with Highly Charged Ions,`` speaks to these points. The experimental work in the past few years has divided into collisions at high velocity using the primary beams from the tandem and LINAC accelerators and collisions at low velocity using the CRYEBIS facility. Theoretical calculations have been performed to accurately describe inelastic scattering processes of the one-electron and many-electron type, and to accurately predict atomic transition energies and intensities for x rays and Auger electrons. Brief research summaries are given for the following: (1) electron production in ion-atom collisions; (2) role of electron-electron interactions in two-electron processes; (3) multi-electron processes; (4) collisions with excited, aligned, Rydberg targets; (5) ion-ion collisions; (6) ion-molecule collisions; (7) ion-atom collision theory; and (8) ion-surface interactions.

  14. Electrical detection of the biological interaction of a charged peptide via gallium arsenide junction-field-effect transistors

    Science.gov (United States)

    Lee, Kangho; Nair, Pradeep R.; Alam, Muhammad A.; Janes, David B.; Wampler, Heeyeon P.; Zemlyanov, Dmitry Y.; Ivanisevic, Albena

    2008-06-01

    GaAs junction-field-effect transistors (JFETs) are utilized to achieve label-free detection of biological interaction between a probe transactivating transcriptional activator (TAT) peptide and the target trans-activation-responsive (TAR) RNA. The TAT peptide is a short sequence derived from the human immunodeficiency virus-type 1 TAT protein. The GaAs JFETs are modified with a mixed adlayer of 1-octadecanethiol (ODT) and TAT peptide, with the ODT passivating the GaAs surface from polar ions in physiological solutions and the TAT peptide providing selective binding sites for TAR RNA. The devices modified with the mixed adlayer exhibit a negative pinch-off voltage (VP) shift, which is attributed to the fixed positive charges from the arginine-rich regions in the TAT peptide. Immersing the modified devices into a TAR RNA solution results in a large positive VP shift (>1 V) and a steeper subthreshold slope (˜80 mV/decade), whereas "dummy" RNA induced a small positive VP shift (˜0.3 V) without a significant change in subthreshold slopes (˜330 mV/decade). The observed modulation of device characteristics is analyzed with analytical modeling and two-dimensional numerical device simulations to investigate the electronic interactions between the GaAs JFETs and biological molecules.

  15. High-Intensity, High Charge-State Heavy Ion Sources

    CERN Document Server

    Alessi, J

    2004-01-01

    There are many accelerator applications for high intensity heavy ion sources, with recent needs including dc beams for RIA, and pulsed beams for injection into synchrotrons such as RHIC and LHC. The present status of sources producing high currents of high charge state heavy ions will be reviewed. These sources include ECR, EBIS, and Laser ion sources. The benefits and limitations for these type sources will be described, for both dc and pulsed applications. Possible future improvements in these type sources will also be discussed.

  16. Electron impact ionization of highly charged lithiumlike ions

    Energy Technology Data Exchange (ETDEWEB)

    Wong, K L

    1992-10-01

    Electron impact ionization cross sections can provide valuable information about the charge-state and power balance of highly charged ions in laboratory and astrophysical plasmas. In the present work, a novel technique based on x-ray measurements has been used to infer the ionization cross section of highly charged lithiumlike ions on the Livermore electron beam ion trap. In particular, a correspondence is established between an observed x ray and an ionization event. The measurements are made at one energy corresponding to approximately 2.3 times the threshold energy for ionization of lithiumlike ions. The technique is applied to the transition metals between Z=22 (titanium, Ti[sup 19+]) and Z=26 (iron, Fe[sup 23+]) and to Z=56 (barium, Ba[sup 53+]). The results for the transition metals, which have an estimated 17-33% uncertainty, are in good overall agreement with a relativistic distorted-wave calculation. However, less good agreement is found for barium, which has a larger uncertainty. Methods for properly accounting for the polarization in the x-ray intensities and for inferring the charge-state abundances from x-ray observations, which were developed for the ionization measurements, as well as an x-ray model that assists in the proper interpretation of the data are also presented.

  17. Electron dynamics at surfaces induced by highly charged ions

    NARCIS (Netherlands)

    Morgenstern, R

    1998-01-01

    Energy spectra of electrons resulting from hydrogen-like multiply charged N6+ and Q(7+) ions on various surfaces are presented and discussed. Por metal target surfaces thr formation and decay of hollow atoms during the approach towards the surface is rather well understood in terms of the classical

  18. Review of highly charged heavy ion production with electron cyclotron resonance ion source (invited)

    Science.gov (United States)

    Nakagawa, T.

    2014-02-01

    The electron cyclotron resonance ion source (ECRIS) plays an important role in the advancement of heavy ion accelerators and other ion beam applications worldwide, thanks to its remarkable ability to produce a great variety of intense highly charged heavy ion beams. Great efforts over the past decade have led to significant ECRIS performance improvements in both the beam intensity and quality. A number of high-performance ECRISs have been built and are in daily operation or are under construction to meet the continuously increasing demand. In addition, comprehension of the detailed and complex physical processes in high-charge-state ECR plasmas has been enhanced experimentally and theoretically. This review covers and discusses the key components, leading-edge developments, and enhanced ECRIS performance in the production of highly charged heavy ion beams.

  19. Emission of ions and charged soot particles by aircraft engines

    Directory of Open Access Journals (Sweden)

    A. Sorokin

    2002-11-01

    Full Text Available In this article, a model which examines the formation and evolution of chemiions in an aircraft engine is proposed. This model which includes chemiionisation, electron thermo-emission, electron attachment to soot particles and to neutral molecules, electron-ion and ion-ion recombination, ion-soot interaction, allows the determination of the ion concentration at the exit of the combustor and at the nozzle exit of the engine. It also allows the determination of the charge of the soot particles. A comparison of the model results with the available ground-based experimental data obtained on the ATTAS research aircraft engines during the SULFUR experiments (Schumann, 2002 shows an excellent agreement.

  20. [Probabilistic calculations of biomolecule charge states that generate mass spectra of multiply charged ions].

    Science.gov (United States)

    Raznikova, M O; Raznikov, V V

    2015-01-01

    In this work, information relating to charge states of biomolecule ions in solution obtained using the electrospray ionization mass spectrometry of different biopolymers is analyzed. The data analyses have mainly been carried out by solving an inverse problem of calculating the probabilities of retention of protons and other charge carriers by ionogenic groups of biomolecules with known primary structures. The approach is a new one and has no known to us analogues. A program titled "Decomposition" was developed and used to analyze the charge distribution of ions of native and denatured cytochrome c mass spectra. The possibility of splitting of the charge-state distribution of albumin into normal components, which likely corresponds to various conformational states of the biomolecule, has been demonstrated. The applicability criterion for using previously described method of decomposition of multidimensional charge-state distributions with two charge carriers, e.g., a proton and a sodium ion, to characterize the spatial structure of biopolymers in solution has been formulated. In contrast to known mass-spectrometric approaches, this method does not require the use of enzymatic hydrolysis or collision-induced dissociation of the biopolymers.

  1. Charged Hadron Multiplicity Distribution at Relativistic Heavy-Ion Colliders

    Directory of Open Access Journals (Sweden)

    Ashwini Kumar

    2013-01-01

    Full Text Available The present paper reviews facts and problems concerning charge hadron production in high energy collisions. Main emphasis is laid on the qualitative and quantitative description of general characteristics and properties observed for charged hadrons produced in such high energy collisions. Various features of available experimental data, for example, the variations of charged hadron multiplicity and pseudorapidity density with the mass number of colliding nuclei, center-of-mass energies, and the collision centrality obtained from heavy-ion collider experiments, are interpreted in the context of various theoretical concepts and their implications. Finally, several important scaling features observed in the measurements mainly at RHIC and LHC experiments are highlighted in the view of these models to draw some insight regarding the particle production mechanism in heavy-ion collisions.

  2. Systematics of heavy-ion charge-exchange straggling

    Science.gov (United States)

    Sigmund, P.; Schinner, A.

    2016-10-01

    The dependence of heavy-ion charge-exchange straggling on the beam energy has been studied theoretically for several ion-target combinations. Our previous work addressed ions up to krypton, while the present study focuses on heavier ions, especially uranium. Particular attention has been paid to a multiple-peak structure which has been predicted theoretically in our previous work. For high-Z1 and high-Z2 systems, exemplified by U in Au, we identify three maxima in the energy dependence of charge-exchange straggling, while the overall magnitude is comparable with that of collisional straggling. Conversely, for U in C, charge-exchange straggling dominates, but only two peaks lie in the energy range where we presently are able to produce credible predictions. For U-Al we find good agreement with experiment in the energy range around the high-energy maximum. The position of the high-energy peak - which is related to processes in the projectile K shell - is found to scale as Z12 , in contrast to the semi-empirical Z13/2 dependence proposed by Yang et al. Measurements for heavy ions in heavy targets are suggested in order to reconcile a major discrepancy between the present calculations and the frequently-used formula by Yang et al.

  3. MULTIPLY CHARGED IONS COLLISIONS WITH ATOMS INTO EXCITED STATES

    Institute of Scientific and Technical Information of China (English)

    PanGuangyan

    1990-01-01

    The emission spectra in collisions between Ions and Atoms have been measured by an Optical Multichannel Analysis System (OMA).The experimental results demonstrate that there are two channels of excitation in collision between single charged ions and atoms and three channels of excitation in collision between double charged ions and atoms.Emission cross cestions and excitation cross sections have been obtained.K.Kadota et al and R.Shingal et al suggested that,under the appropriate conditions,the H42+-Li and He2++Na collision systems can be used efficiently to produce a laser of Lyman-α(30,4nm) and Lyman-β(25.6nm)lines via cascade to He+(2P)state.

  4. Multipole correction of atomic monopole models of molecular charge distribution. I. Peptides

    Science.gov (United States)

    Sokalski, W. A.; Keller, D. A.; Ornstein, R. L.; Rein, R.

    1993-01-01

    The defects in atomic monopole models of molecular charge distribution have been analyzed for several model-blocked peptides and compared with accurate quantum chemical values. The results indicate that the angular characteristics of the molecular electrostatic potential around functional groups capable of forming hydrogen bonds can be considerably distorted within various models relying upon isotropic atomic charges only. It is shown that these defects can be corrected by augmenting the atomic point charge models by cumulative atomic multipole moments (CAMMs). Alternatively, sets of off-center atomic point charges could be automatically derived from respective multipoles, providing approximately equivalent corrections. For the first time, correlated atomic multipoles have been calculated for N-acetyl, N'-methylamide-blocked derivatives of glycine, alanine, cysteine, threonine, leucine, lysine, and serine using the MP2 method. The role of the correlation effects in the peptide molecular charge distribution are discussed.

  5. High resolution charge spectroscopy of heavy ions with FNTD technology

    Science.gov (United States)

    Bartz, J. A.; Kodaira, S.; Kurano, M.; Yasuda, N.; Akselrod, M. S.

    2014-09-01

    This paper is focused on the improvement of the heavy charge particle charge resolution of Fluorescent Nuclear Track Detector (FNTD) technology. Fluorescent intensity of individual heavy charge particle tracks is used to construct the spectrum. Sources of spectroscopic line broadening were investigated and several fluorescent intensity correction procedures were introduced to improve the charge resolution down to δZ = 0.25 c.u. and enable FNTD technology to distinguish between all projectile fragments of 290 MeV carbon ions. The benefits of using FNTD technology for fragmentation study include large dynamic range and wide angular acceptance. While we describe these developments in the context of fragmentation studies, the same techniques are readily extended to FNTD LET spectroscopy in general.

  6. Strong-field relativistic processes in highly charged ions

    Energy Technology Data Exchange (ETDEWEB)

    Postavaru, Octavian

    2010-12-08

    In this thesis we investigate strong-field relativistic processes in highly charged ions. In the first part, we study resonance fluorescence of laser-driven highly charged ions in the relativistic regime by solving the time-dependent master equation in a multi-level model. Our ab initio approach based on the Dirac equation allows for investigating highly relativistic ions, and, consequently, provides a sensitive means to test correlated relativistic dynamics, bound-state quantum electrodynamic phenomena and nuclear effects by applying coherent light with x-ray frequencies. Atomic dipole or multipole moments may be determined to unprecedented accuracy by measuring the interference-narrowed fluorescence spectrum. Furthermore, we investigate the level structure of heavy hydrogenlike ions in laser beams. Interaction with the light field leads to dynamic shifts of the electronic energy levels, which is relevant for spectroscopic experiments. We apply a fully relativistic description of the electronic states by means of the Dirac equation. Our formalism goes beyond the dipole approximation and takes into account non-dipole effects of retardation and interaction with the magnetic field components of the laser beam. We predicted cross sections for the inter-shell trielectronic recombination (TR) and quadruelectronic recombination processes which have been experimentally confirmed in electron beam ion trap measurements, mainly for C-like ions, of Ar, Fe and Kr. For Kr{sup 30}+, inter-shell TR contributions of nearly 6% to the total resonant photorecombination rate were found. (orig.)

  7. A compact source for bunches of singly charged atomic ions.

    Science.gov (United States)

    Murböck, T; Schmidt, S; Andelkovic, Z; Birkl, G; Nörtershäuser, W; Vogel, M

    2016-04-01

    We have built, operated, and characterized a compact ion source for low-energy bunches of singly charged atomic ions in a vacuum beam line. It is based on atomic evaporation from an electrically heated oven and ionization by electron impact from a heated filament inside a grid-based ionization volume. An adjacent electrode arrangement is used for ion extraction and focusing by applying positive high-voltage pulses to the grid. The method is particularly suited for experimental environments which require low electromagnetic noise. It has proven simple yet reliable and has been used to produce μs-bunches of up to 10(6) Mg(+) ions at a repetition rate of 1 Hz. We present the concept, setup and characterizing measurements. The instrument has been operated in the framework of the SpecTrap experiment at the HITRAP facility at GSI/FAIR to provide Mg(+) ions for sympathetic cooling of highly charged ions by laser-cooled (24)Mg(+).

  8. Escherichia coli Peptide Binding Protein OppA Has a Preference for Positively Charged Peptides

    NARCIS (Netherlands)

    Klepsch, M. M.; Kovermann, M.; Löw, C.; Balbach, J.; Permentier, H. P.; Fusetti, F.; de Gier, J. W.; Gier, Jan-Willem de; Slotboom, D. J.; Berntsson, R. P. -A.

    2011-01-01

    The Escherichia coli peptide binding protein OppA is an essential component of the oligopeptide transporter Opp. Based on studies on its orthologue from Salmonella typhimurium, it has been proposed that OppA binds peptides between two and five amino acids long, with no apparent sequence selectivity.

  9. High ion charge states in a high-current, short-pulse, vacuum ARC ion sources

    Energy Technology Data Exchange (ETDEWEB)

    Anders, A.; Brown, I.; MacGill, R.; Dickinson, M. [Lawrence Berkeley National Lab., CA (United States)

    1996-08-01

    Ions of the cathode material are formed at vacuum arc cathode spots and extracted by a grid system. The ion charge states (typically 1-4) depend on the cathode material and only little on the discharge current as long as the current is low. Here the authors report on experiments with short pulses (several {mu}s) and high currents (several kA); this regime of operation is thus approaching a more vacuum spark-like regime. Mean ion charge states of up to 6.2 for tungsten and 3.7 for titanium have been measured, with the corresponding maximum charge states of up to 8+ and 6+, respectively. The results are discussed in terms of Saha calculations and freezing of the charge state distribution.

  10. Conformation-specific spectroscopy of peptide fragment ions in a low-temperature ion trap.

    Science.gov (United States)

    Wassermann, Tobias N; Boyarkin, Oleg V; Paizs, Béla; Rizzo, Thomas R

    2012-06-01

    We have applied conformer-selective infrared-ultraviolet (IR-UV) double-resonance photofragment spectroscopy at low temperatures in an ion trap mass spectrometer for the spectroscopic characterization of peptide fragment ions. We investigate b- and a-type ions formed by collision-induced dissociation from protonated leucine-enkephalin. The vibrational analysis and assignment are supported by nitrogen-15 isotopic substitution of individual amino acid residues and assisted by density functional theory calculations. Under such conditions, b-type ions of different size are found to appear exclusively as linear oxazolone structures with protonation on the N-terminus, while a rearrangement reaction is confirmed for the a (4) ion in which the side chain of the C-terminal phenylalanine residue is transferred to the N-terminal side of the molecule. The vibrational spectra that we present here provide a particularly stringent test for theoretical approaches.

  11. Conformation-Specific Spectroscopy of Peptide Fragment Ions in a Low-Temperature Ion Trap

    Science.gov (United States)

    Wassermann, Tobias N.; Boyarkin, Oleg V.; Paizs, Béla; Rizzo, Thomas R.

    2012-06-01

    We have applied conformer-selective infrared-ultraviolet (IR-UV) double-resonance photofragment spectroscopy at low temperatures in an ion trap mass spectrometer for the spectroscopic characterization of peptide fragment ions. We investigate b- and a-type ions formed by collision-induced dissociation from protonated leucine-enkephalin. The vibrational analysis and assignment are supported by nitrogen-15 isotopic substitution of individual amino acid residues and assisted by density functional theory calculations. Under such conditions, b-type ions of different size are found to appear exclusively as linear oxazolone structures with protonation on the N-terminus, while a rearrangement reaction is confirmed for the a 4 ion in which the side chain of the C-terminal phenylalanine residue is transferred to the N-terminal side of the molecule. The vibrational spectra that we present here provide a particularly stringent test for theoretical approaches.

  12. Modulating Charge Transfer Through Cyclic D,L α-Peptide Self-Assembly

    OpenAIRE

    Horne, W. Seth; Ashkenasy, Nurit; Ghadiri, M. Reza

    2005-01-01

    We describe a concise solid support-based synthetic method for the preparation of cyclic D,L α-peptides bearing 1,4,5,8-naphthalenetetracarboxylic diimide (NDI) side chains. Studies of the structural and photoluminescence properties of these molecules in solution show that the hydrogen bond directed self-assembly of the cyclic D,L α-peptide backbone promotes intermolecular NDI excimer formation. The efficiency of NDI charge transfer in the resulting supramolecular assemblies is shown to depen...

  13. Electrochemical Metal Ion Sensors. Exploiting Amino Acids and Peptides as Recognition Elements

    Directory of Open Access Journals (Sweden)

    Wenrong Yang

    2001-08-01

    Full Text Available Amino acids and peptides are known to bind metal ions, in some cases very strongly. There are only a few examples of exploiting this binding in sensors. The review covers the current literature on the interaction of peptides and metals and the electrochemistry of bound metal ions. Peptides may be covalently attached to surfaces. Of particular interest is the attachment to gold via sulfur linkages. Sulfur-containing peptides (eg cysteine may be adsorbed directly, while any amino group can be covalently attached to a carboxylic acid-terminated thiol. Once at a surface, the possibility for using the attached peptide as a sensor for metal ions becomes realised. Results from the authors’ laboratory and elsewhere have shown the potential for selective monitoring of metal ions at ppt levels. Examples of the use of poly-aspartic acid and the copper binding peptide Gly-Gly-His for detecting copper ions are given.

  14. Charge-dependent dissociation of insulin cations via ion/ion electron transfer

    Science.gov (United States)

    Liu, Jian; Gunawardena, Harsha P.; Huang, Teng-Yi; McLuckey, Scott A.

    2008-10-01

    The dissociation reactions of various charge states of insulin cations obtained directly from nano-electrospray were investigated as a result of ion/ion electron transfer from azobenzene anions. Data were collected with and without simultaneous ion trap collisional excitation of the first generation charge-reduced product during the ion/ion reaction period. Neither separation of the two constituent chains nor cleavages within the loop defined by the disulfide bridges were observed under normal electron transfer dissociation (ETD) conditions for any of the charge states studied. However, substantial sequence coverage (exocyclic region: 82.6%; entire protein: 38.8%) outside the ring structure was obtained for insulin +6, while only limited coverage (exocyclic: 43.5%; entire protein: 20.4%) was observed for insulin +5 and no dissociation, aside from low abundance side-chain losses, was noted for insulin +4 and +3 in the normal ETD spectra. When the first generation charge-reduced precursor ions were subjected to collisional activation during the ion/ion reaction period, higher sequence coverages were obtained for both insulin +5 (entire protein: 34.7%) and +4 (entire protein: 20.4%) with backbone cleavages occurring within the loop defined by the disulfide bonds. Dissociation of insulin +3 was not significantly improved by the additional activation. Separation of the two constituent chains resulting from cleavages of both of the two disulfide bridges that link the chains was observed for insulin +6, +5, and +4 when the charge-reduced species were activated. The dissociation of disulfide linkages in this study suggests that as the charge state decreases, disulfide bond cleavages dominate over N-C[alpha] bond cleavages in the electron transfer dissociation process.

  15. Irradiation of graphene field effect transistors with highly charged ions

    Science.gov (United States)

    Ernst, P.; Kozubek, R.; Madauß, L.; Sonntag, J.; Lorke, A.; Schleberger, M.

    2016-09-01

    In this work, graphene field-effect transistors are used to detect defects due to irradiation with slow, highly charged ions. In order to avoid contamination effects, a dedicated ultra-high vacuum set up has been designed and installed for the in situ cleaning and electrical characterization of graphene field-effect transistors during irradiation. To investigate the electrical and structural modifications of irradiated graphene field-effect transistors, their transfer characteristics as well as the corresponding Raman spectra are analyzed as a function of ion fluence for two different charge states. The irradiation experiments show a decreasing mobility with increasing fluences. The mobility reduction scales with the potential energy of the ions. In comparison to Raman spectroscopy, the transport properties of graphene show an extremely high sensitivity with respect to ion irradiation: a significant drop of the mobility is observed already at fluences below 15 ions/μm2, which is more than one order of magnitude lower than what is required for Raman spectroscopy.

  16. Influence of solar wind ions on photoemission charging of dust

    Science.gov (United States)

    Nouzak, Libor; Richterova, Ivana; Pavlu, Jiri; Safrankova, Jana; Nemecek, Zdenek

    2016-04-01

    The lunar surface covered by a layer of dust grains is exposed to solar wind particles and photons coming from the Sun on the sunlit side. Solar wind ions cause sputtering of dust grains or can be implanted into grains. We suppose that as a consequence of ion implantation, an additional energy is transferred to grains, more valence band electrons are excited, and the photoelectron yield is increased. An increase of the photoelectron current causes the enhanced density of electrons that form a sheet above the illuminated lunar surface. Thus, an influence of solar wind ions on the Debye length and photoelectron sheet formation is expected. We present laboratory estimations of work functions and photoelectron yields of a single micron-sized silica grain before and after ion implantation. The silica grain used as a lunar simulant is caught in the electrodynamic trap. Grain's specific charge is evaluated by an analysis of the grain motion within the trap, while its work function is determined from observations of a time evolution of the charge-to-mass ratio when the grain is irradiated by photons of different emission lines. By comparison of the photoelectron current (from grain) with photon flux (from UV source), we establish the photoelectron yield of the trapped object. The influence of ion implantation is thoroughly analyzed and discussed.

  17. Peripheral collisions of highly charged ions with metal clusters

    Institute of Scientific and Technical Information of China (English)

    Zhang Cheng-Jun; Hu Bi-Tao; Luo Xian-Wen

    2012-01-01

    Within the framework of the dynamical classical over-barrier model,the soft collisions between slow highly charged ions(SHCIs)Ar17+ and the large copper clusters under large impact parameters have been studied in this paper.We present the dominant mechanism of the electron transfer between SHCls and a large metal cluster by computational simulation.The evolution of the occupation of projectile ions,KLχ satellite lines,X-ray yields,Auger electron spectrum and scattering angles are provided.

  18. Characterization of Protein and Peptide Binding to Nanogels Formed by Differently Charged Chitosan Derivatives

    Directory of Open Access Journals (Sweden)

    Anastasia Zubareva

    2013-07-01

    Full Text Available Chitosan (Chi is a natural biodegradable cationic polymer with remarkable potency as a vehicle for drug or vaccine delivery. Chi possesses multiple groups, which can be used both for Chi derivatization and for particle formation. The aim of this work was to produce stable nanosized range Chi gels (nanogels, NGs with different charge and to study the driving forces of complex formation between Chi NGs and proteins or peptides. Positively charged NGs of 150 nm in diameter were prepared from hexanoyl chitosan (HC by the ionotropic gelation method while negatively charged NGs of 190 nm were obtained from succinoyl Chi (SC by a Ca2+ coacervation approach. NGs were loaded with a panel of proteins or peptides with different weights and charges. We show that NGs preferentially formed complexes with oppositely charged molecules, especially peptides, as was demonstrated by gel-electrophoresis, confocal microscopy and HPLC. Complex formation was accompanied by a change in zeta-potential and decrease in size. We concluded that complex formation between Chi NGs and peptide/proteins is mediated mostly by electrostatic interactions.

  19. Single ion induced surface nanostructures: a comparison between slow highly charged and swift heavy ions.

    Science.gov (United States)

    Aumayr, Friedrich; Facsko, Stefan; El-Said, Ayman S; Trautmann, Christina; Schleberger, Marika

    2011-10-05

    This topical review focuses on recent advances in the understanding of the formation of surface nanostructures, an intriguing phenomenon in ion-surface interaction due to the impact of individual ions. In many solid targets, swift heavy ions produce narrow cylindrical tracks accompanied by the formation of a surface nanostructure. More recently, a similar nanometric surface effect has been revealed for the impact of individual, very slow but highly charged ions. While swift ions transfer their large kinetic energy to the target via ionization and electronic excitation processes (electronic stopping), slow highly charged ions produce surface structures due to potential energy deposited at the top surface layers. Despite the differences in primary excitation, the similarity between the nanostructures is striking and strongly points to a common mechanism related to the energy transfer from the electronic to the lattice system of the target. A comparison of surface structures induced by swift heavy ions and slow highly charged ions provides a valuable insight to better understand the formation mechanisms.

  20. Semiconductor characterization by scanning ion beam induced charge (IBIC) microscopy

    CERN Document Server

    Vittone, E; Olivero, P; Manfredotti, C; Jaksic, M; Giudice, A Lo; Fizzotti, F; Colombo, E

    2016-01-01

    The acronym IBIC (Ion Beam Induced Charge) was coined in early 1990's to indicate a scanning microscopy technique which uses MeV ion beams as probes to image the basic electronic properties of semiconductor materials and devices. Since then, IBIC has become a widespread analytical technique to characterize materials for electronics or for radiation detection, as testified by more than 200 papers published so far in peer-reviewed journals. Its success stems from the valuable information IBIC can provide on charge transport phenomena occurring in finished devices, not easily obtainable by other analytical techniques. However, IBIC analysis requires a robust theoretical background to correctly interpret experimental data. In order to illustrate the importance of using a rigorous mathematical formalism, we present in this paper a benchmark IBIC experiment aimed to test the validity of the interpretative model based on the Gunn's theorem and to provide an example of the analytical capability of IBIC to characteriz...

  1. An electrostatic deceleration lens for highly charged ions.

    Science.gov (United States)

    Rajput, J; Roy, A; Kanjilal, D; Ahuja, R; Safvan, C P

    2010-04-01

    The design and implementation of a purely electrostatic deceleration lens used to obtain beams of highly charged ions at very low energies is presented. The design of the lens is such that it can be used with parallel as well as diverging incoming beams and delivers a well focused low energy beam at the target. In addition, tuning of the final energy of the beam over a wide range (1 eV/q to several hundred eV/q, where q is the beam charge state) is possible without any change in hardware configuration. The deceleration lens was tested with Ar(8+), extracted from an electron cyclotron resonance ion source, having an initial energy of 30 keV/q and final energies as low as 70 eV/q have been achieved.

  2. Low charge state heavy ion production with sub-nanosecond laser

    Energy Technology Data Exchange (ETDEWEB)

    Kanesue, T., E-mail: tkanesue@bnl.gov; Okamura, M. [Collider-Accelerator Department, Brookhaven National Laboratory, Upton, New York 11973 (United States); Kumaki, M. [Research Institute for Science and Engineering, Waseda University, Tokyo 169-8555 (Japan); Nishina Center for Accelerator-Based Science, RIKEN, Saitama 351-0198 (Japan); Ikeda, S. [Nishina Center for Accelerator-Based Science, RIKEN, Saitama 351-0198 (Japan); Interdisciplinary Graduate School of Science and Engineering, Tokyo Institute of Technology, Kanagawa 226-8503 (Japan)

    2016-02-15

    We have investigated laser ablation plasma of various species using nanosecond and sub-nanosecond lasers for both high and low charge state ion productions. We found that with sub-nanosecond laser, the generated plasma has a long tail which has low charge state ions determined by an electrostatic ion analyzer even under the laser irradiation condition for highly charged ion production. This can be caused by insufficient laser absorption in plasma plume. This property might be suitable for low charge state ion production. We used a nanosecond laser and a sub-nanosecond laser for low charge state ion production to investigate the difference of generated plasma using the Zirconium target.

  3. Low charge state heavy ion production with sub-nanosecond laser.

    Science.gov (United States)

    Kanesue, T; Kumaki, M; Ikeda, S; Okamura, M

    2016-02-01

    We have investigated laser ablation plasma of various species using nanosecond and sub-nanosecond lasers for both high and low charge state ion productions. We found that with sub-nanosecond laser, the generated plasma has a long tail which has low charge state ions determined by an electrostatic ion analyzer even under the laser irradiation condition for highly charged ion production. This can be caused by insufficient laser absorption in plasma plume. This property might be suitable for low charge state ion production. We used a nanosecond laser and a sub-nanosecond laser for low charge state ion production to investigate the difference of generated plasma using the Zirconium target.

  4. Ion Mobility-Mass Spectrometry as a Tool for the Structural Characterization of Peptides Bearing Intramolecular Disulfide Bond(s)

    Science.gov (United States)

    Massonnet, Philippe; Haler, Jean R. N.; Upert, Gregory; Degueldre, Michel; Morsa, Denis; Smargiasso, Nicolas; Mourier, Gilles; Gilles, Nicolas; Quinton, Loïc; De Pauw, Edwin

    2016-10-01

    Disulfide bonds are post-translationnal modifications that can be crucial for the stability and the biological activities of natural peptides. Considering the importance of these disulfide bond-containing peptides, the development of new techniques in order to characterize these modifications is of great interest. For this purpose, collision cross cections (CCS) of a large data set of 118 peptides (displaying various sequences) bearing zero, one, two, or three disulfide bond(s) have been measured in this study at different charge states using ion mobility-mass spectrometry. From an experimental point of view, CCS differences (ΔCCS) between peptides bearing various numbers of disulfide bonds and peptides having no disulfide bonds have been calculated. The ΔCCS calculations have also been applied to peptides bearing two disulfide bonds but different cysteine connectivities (Cys1-Cys2/Cys3-Cys4; Cys1-Cys3/Cys2-Cys4; Cys1-Cys4/Cys2-Cys3). The effect of the replacement of a proton by a potassium adduct on a peptidic structure has also been investigated.

  5. Progress in quantum electrodynamics theory of highly charged ions

    OpenAIRE

    Volotka, A. V.; Glazov, D. A.; Plunien, G.; Shabaev, V. M.

    2013-01-01

    Recent progress in quantum electrodynamics (QED) calculations of highly charged ions is reviewed. The theoretical predictions for the binding energies, the hyperfine splittings, and the g factors are presented and compared with available experimental data. Special attention is paid to tests of bound-state QED at strong field regime. Future prospects for tests of QED at the strongest electric and magnetic fields as well as for determination of the fine structure constant and the nuclear magnet...

  6. Anion and cation mixed-bed ion exchange for enhanced multidimensional separations of peptides and phosphopeptides.

    Science.gov (United States)

    Motoyama, Akira; Xu, Tao; Ruse, Cristian I; Wohlschlegel, James A; Yates, John R

    2007-05-15

    Shotgun proteomics typically uses multidimensional LC/MS/MS analysis of enzymatically digested proteins, where strong cation-exchange (SCX) and reversed-phase (RP) separations are coupled to increase the separation power and dynamic range of analysis. Here we report an on-line multidimensional LC method using an anion- and cation-exchange mixed bed for the first separation dimension. The mixed-bed ion-exchange resin improved peptide recovery over SCX resins alone and showed better orthogonality to RP separations in two-dimensional separations. The Donnan effect, which was enhanced by the introduction of fixed opposite charges in one column, is proposed as the mechanism responsible for improved peptide recovery by producing higher fluxes of salt cations and lower populations of salt anions proximal to the SCX phase. An increase in orthogonality was achieved by a combination of increased retention for acidic peptides and moderately reduced retention of neutral to basic peptides by the added anion-exchange resin. The combination of these effects led to approximately 100% increase in the number of identified peptides from an analysis of a tryptic digest of a yeast whole cell lysate. The application of the method to phosphopeptide-enriched samples increased by 94% phosphopeptide identifications over SCX alone. The lower pKa of phosphopeptides led to specific enrichment in a single salt step resolving acidic phosphopeptides from other phospho- and non-phosphopeptides. Unlike previous methods that use anion exchange to alter selectivity or enrich phosphopeptides, the proposed format is unique in that it works with typical acidic buffer systems used in electrospray ionization, making it feasible for online multidimensional LC/MS/MS applications.

  7. Spectroscopic Identification of Cyclic Imide b2-Ions from Peptides Containing Gln and Asn Residues

    NARCIS (Netherlands)

    J. Grzetic; J. Oomens

    2013-01-01

    In mass-spectrometry based peptide sequencing, formation of b- and y-type fragments by cleavage of the amide C-N bond constitutes the main dissociation pathway of protonated peptides under low-energy collision induced dissociation (CID). The structure of the b (2) fragment ion from peptides containi

  8. Laboratory Studies of Thermal Energy Charge Transfer of Multiply Charged Ions in Astrophysical Plasmas

    Science.gov (United States)

    Kwong, Victor H. S.

    2003-01-01

    The laser ablation/ion storage facility at the UNLV Physics Department has been dedicated to the study of atomic and molecular processes in low temperature plasmas. Our program focuses on the charge transfer (electron capture) of multiply charged ions and neutrals important in astrophysics. The electron transfer reactions with atoms and molecules is crucial to the ionization condition of neutral rich photoionized plasmas. With the successful deployment of the Far Ultraviolet Spectroscopic Explorer (FUSE) and the Chandra X-ray Observatory by NASA high resolution VUV and X-ray emission spectra fiom various astrophysical objects have been collected. These spectra will be analyzed to determine the source of the emission and the chemical and physical environment of the source. The proper interpretation of these spectra will require complete knowledge of all the atomic processes in these plasmas. In a neutral rich environment, charge transfer can be the dominant process. The rate coefficients need to be known accurately. We have also extended our charge transfer measurements to KeV region with a pulsed ion beam. The inclusion of this facility into our current program provides flexibility in extending the measurement to higher energies (KeV) if needed. This flexibility enables us to address issues of immediate interest to the astrophysical community as new observations are made by high resolution space based observatories.

  9. Effects of Ions Charge-Mass Ratio on Energy and Energy Spread of Accelerated Ions in Laser Driven Plasma

    Institute of Scientific and Technical Information of China (English)

    SANG Hai-Bo; DENG Shi-Qiang; XIE Bai-Song

    2013-01-01

    Effects of ions charge-mass ratio on energy and energy spread of accelerated ions in laser driven plasma are investigated in detail by proposing a simple double-layer model for a foil target driven by an ultrastrong laser.The radiation pressure acceleration mechanism plays an important role on the studied problem.For the ions near the plasma mirror,i.e.electrons layer,the dependence of ions energy on their charge-mass ratio is derived theoretically.It is found that the larger the charge-mass ratio is,the higher the accelerated ions energy gets.For those ions far away from the layer,the dependence of energy and energy spread on ions charge-mass ratio are also obtained by numerical performance.It exhibits that,as ions charge-mass ratio increases,not only the accelerated ions energy but also the energy spread will become large.

  10. Highly charged ion X-rays from Electron-Cyclotron Resonance Ion Sources

    OpenAIRE

    Indelicato, Paul; Boucard, S.; Covita, D. S.; Gotta, D.; Gruber, A; Hirtl, A.; Fuhrmann, H.; Le Bigot, E.-O.; Schlesser, S.; dos Santos, J. M. F.; Simons, L.M.; Stingelin, L.; Trassinelli, Martino; Veloso, J.; Wasser, A.

    2006-01-01

    Radiation from the highly-charged ions contained in the plasma of Electron-Cyclotron Resonance Ion Sources constitutes a very bright source of X-rays. Because the ions have a relatively low kinetic energy ($\\approx 1$~eV) transitions can be very narrow, containing only small Doppler broadening. We describe preliminary accurate measurements of two and three-electron ions with $Z=16$--18. We show how these measurement can test sensitively many-body relativistic calculations or can be used as X-...

  11. Production of a highly charged uranium ion beam with RIKEN superconducting electron cyclotron resonance ion source

    Energy Technology Data Exchange (ETDEWEB)

    Higurashi, Y.; Ohnishi, J.; Nakagawa, T.; Haba, H.; Fujimaki, M.; Komiyama, M.; Kamigaito, O. [RIKEN Nishina Center, 2-1 Hirosawa, Wako-shi, Saitama 351-0198 (Japan); Tamura, M.; Aihara, T.; Uchiyama, A. [SHI Accelerator Service Ltd., 1-17-6 Osaki, Shinagawa, Tokyo 141-0032 (Japan)

    2012-02-15

    A highly charged uranium (U) ion beam is produced from the RIKEN superconducting electron cyclotron resonance ion source using 18 and 28 GHz microwaves. The sputtering method is used to produce this U ion beam. The beam intensity is strongly dependent on the rod position and sputtering voltage. We observe that the emittance of U{sup 35+} for 28 GHz microwaves is almost the same as that for 18 GHz microwaves. It seems that the beam intensity of U ions produced using 28 GHz microwaves is higher than that produced using 18 GHz microwaves at the same Radio Frequency (RF) power.

  12. Charge density asymmetry of heavy-ion fusion reactions

    Energy Technology Data Exchange (ETDEWEB)

    Poenaru, N.D.; Ivascu, M.; Mazilu, D.; Sandulescu, A. (Institutul de Fizica si Inginerie Nucleara, Bucharest (Romania))

    1980-01-01

    The generalized liquid-drop model replacing surface energy by double folded Yukawa-plus-exponential function is extended for fusion of heavy ions with different charge densities. Calculated interaction barriers for some 58 pairs of nuclei are in good agreement with experimental ones, within -10% and +7%. For even-even beta-stable nuclei with Z =4-104 the general trend of variation of interaction barriers and fusion Q-values show the regions where the charge density asymmetry cannot be neglected. PES for the entrance channel of the reactions /sup 109/Ag + /sup 40/Ar, /sup 138/Ce + /sup 57/Fe, /sup 144/Nd + /sup 84/Kr and the corresponding charge-equilibrated system have been computed.

  13. Producing highly charged ions without solvent using laserspray ionization: a total solvent-free analysis approach at atmospheric pressure.

    Science.gov (United States)

    Wang, Beixi; Lietz, Christopher B; Inutan, Ellen D; Leach, Samantha M; Trimpin, Sarah

    2011-06-01

    First examples of highly charged ions in mass spectrometry (MS) produced from the solid state without using solvent during either sample preparation or mass measurement are reported. Matrix material, matrix/analyte homogenization time and frequency, atmospheric pressure (AP) to vacuum inlet temperature, and mass analyzer ion trap conditions are factors that influence the abundance of the highly charged ions created by laserspray ionization (LSI). LSI, like matrix-assisted laser desorption/ionization (MALDI), uses laser ablation of a matrix/analyte mixture from a surface to produce ions. Preparing the matrix/analyte sample without the use of solvent provides the ability to perform total solvent-free analysis (TSA) consisting of solvent-free ionization and solvent-free gas-phase separation using ion mobility spectrometry (IMS) MS. Peptides and small proteins such as non-β-amyloid components of Alzheimer's disease and bovine insulin are examples in which LSI and TSA were combined to produce multiply charged ions, similar to electrospray ionization, but without the use of solvent. Advantages using solvent-free LSI and IMS-MS include simplicity, rapid data acquisition, reduction of sample complexity, and the potential for an enhanced effective dynamic range. This is achieved by more inclusive ionization and improved separation of mixture components as a result of multiple charging.

  14. Experimental Results on Charge Fluctuations in Heavy-Ion Collisions

    Directory of Open Access Journals (Sweden)

    D. K. Mishra

    2017-01-01

    Full Text Available We present a subset of experimental results on charge fluctuation from the heavy-ion collisions to search for phase transition and location of critical point in the QCD phase diagram. Measurements from the heavy-ion experiments at the SPS and RHIC energies observe that total charge fluctuations increase from central to peripheral collisions. The net-charge fluctuations in terms of dynamical fluctuation measure ν(+-,dyn are studied as a function of collision energy (sNN and centrality of the collisions. The product of ν(+-,dyn and 〈Nch〉 shows a monotonic decrease with collision energies, which indicates that at LHC energy the fluctuations have their origin in the QGP phase. The fluctuations in terms of higher moments of net-proton, net-electric charge, and net-kaon have been measured for various sNN. Deviations are observed in both Sσ and κσ2 for net-proton multiplicity distributions from the Skellam and hadron resonance gas model for sNN<39 GeV. Higher moment results of the net-electric charge and net-kaon do not observe any significant nonmonotonic behavior as a function of collision energy. We also discuss the extraction of the freeze-out parameters using particle ratios and experimentally measured higher moments of net-charge fluctuations. The extracted freeze-out parameters from experimentally measured moments and lattice calculations are found to be in agreement with the results obtained from the fit of particle ratios to the thermal model calculations.

  15. Dynamics of Ion Beam Charge Neutralization by Ferroelectric Plasma Sources

    Science.gov (United States)

    Stepanov, Anton D.; Gilson, Erik P.; Grisham, Larry R.; Kaganovich, Igor D.; Davidson, Ronald C.; Ji, Qing; Persaud, Arun; Seidl, Peter A.; Schenkel, Thomas

    2016-10-01

    Ferroelectric Plasma Sources (FEPSs) can generate plasma that provides effective space-charge neutralization of intense high-perveance ion beams. Here we present experimental results on charge neutralization of a high-perveance 38 keV Ar+ beam by a FEPS plasma. By comparing the measured beam radius with the envelope model for space-charge expansion, it is shown that a charge neutralization fraction of 98% is attainable. The transverse electrostatic potential of the ion beam is reduced from 15 V before neutralization to 0.3 V, implying that the energy of the neutralizing electrons is below 0.3 eV. Near-complete charge neutralization is established 5 μs after the driving pulse is applied to the FEPS, and can last for 35 μs. It is argued that the duration of neutralization is much longer than a reasonable lifetime of the plasma produced in the sub- μs surface discharge. Measurements of current flow in the driving circuit of the FEPS suggest that plasma can be generated for tens of μs after the high voltage pulse is applied. This is confirmed by fast photography of the plasma in the 1-meter long FEPS on NDCX-II, where effective charge neutralization of the beam was achieved with the optimized FEPS timing. This work was supported by the Office of Science of the US Department of Energy under contracts DE-AC0209CH11466 (PPPL) and DE-AC0205CH11231 (LBNL).

  16. The uses of electron beam ion traps in the study of highly charged ions

    Energy Technology Data Exchange (ETDEWEB)

    Knapp, D.

    1994-11-02

    The Electron Beam Ion Trap (EBIT) is a relatively new tool for the study of highly charged ions. Its development has led to a variety of new experimental opportunities; measurements have been performed with EBITs using techniques impossible with conventional ion sources or storage rings. In this paper, I will highlight the various experimental techniques we have developed and the results we have obtained using the EBIT and higher-energy Super-EBIT built at the Lawrence Livermore National Laboratory. The EBIT employs a high-current-density electron beam to trap, ionize, and excite a population of ions. The ions can be studied in situ or extracted from the trap for external experiments. The trapped ions form an ionization-state equilibrium determined by the relative ionization and recombination rates. Ions of several different elements may simultaneously be present in the trap. The ions are nearly at rest, and, for most systems, all in their ground-state configurations. The electron-ion interaction energy has a narrow distribution and can be varied over a wide range. We have used the EBIT devices for the measurement of electron-ion interactions, ion structure, ion-surface interactions, and the behavior of low-density plasmas.

  17. Charge transport in vertically aligned, self-assembled peptide nanotube junctions

    Science.gov (United States)

    Mizrahi, Mordechay; Zakrassov, Alexander; Lerner-Yardeni, Jenny; Ashkenasy, Nurit

    2012-01-01

    The self-assembly propensity of peptides has been extensively utilized in recent years for the formation of supramolecular nanostructures. In particular, the self-assembly of peptides into fibrils and nanotubes makes them promising building blocks for electronic and electro-optic applications. However, the mechanisms of charge transfer in these wire-like structures, especially in ambient conditions, are not yet fully understood. We describe here a layer-by-layer deposition methodology of short self-assembled cyclic peptide nanotubes, which results in vertically oriented nanotubes on gold substrates. Using this novel deposition methodology, we have fabricated molecular junctions with a conductive atomic force microscopy tip as a second electrode. Studies of the junctions' current-voltage characteristics as a function of the nanotube length revealed an efficient charge transfer in these supramolecular structures, with a low current attenuation constant of 0.1 Å-1, which indicate that electron transfer is dominated by hopping. Moreover, the threshold voltage to field-emission dominated transport was found to increase with peptide length in a manner that depends on the nature of the contact with the electrodes. The flexibility in the design of the peptide monomers and the ability to control their sequential order over the nanotube by means of the layer-by-layer assembly process, which is demonstrated in this work, can be used to engineer the electronic properties of self-assembled peptide nanotubes toward device applications.

  18. Selective Acylation Enhances Membrane Charge Sensitivity of the Antimicrobial Peptide Mastoparan-X

    DEFF Research Database (Denmark)

    Etzerodt, Thomas Povl; Henriksen, Jonas Rosager; Rasmussen, Palle;

    2011-01-01

    The partitioning of the wasp venom peptide mastoparan-X (MPX) into neutral and negatively charged lipid membranes has been compared with two new synthetic analogs of MPX where the Nα-terminal of MPX was acylated with propanoic acid (PA) and octanoic acid (OA). The acylation caused a considerable ...

  19. Effects of Charge Location on the Absorptions and Lifetimes of Protonated Tyrosine Peptides in Vacuo

    DEFF Research Database (Denmark)

    Kelly, O.; Calvert, C.R.; Greenwood, J.B.;

    2012-01-01

    Nearby charges affect the electronic energy levels of chromophores, with the extent of the effect being determined by the magnitude of the charge and degree of charge-chromophore separation. The molecular configuration dictates the charge–chromophore distance. Hence, in this study, we aim to assess......-crown-6-ether (CE). The CE targets the ammonium group by forming internal ionic hydrogen bonds and limits the folding of the peptide. In the tripeptide, the distance between the chromophore and the backbone ammonium is enlarged relative to that in the dipeptide. Experiments were performed...

  20. Physical mechanisms leading to high currents of highly charged ions in laser-driven ion sources

    Energy Technology Data Exchange (ETDEWEB)

    Haseroth, Helmut [European Organization for Nuclear Research, Geneva (Switzerland); Hora, Heinrich [New South Wales Univ., Kensington, NSW (Australia)]|[Regensburg Inst. of Tech. (Germany). Anwenderzentrum

    1996-12-31

    Heavy ion sources for the big accelerators, for example, the LHC, require considerably more ions per pulse during a short time than the best developed classical ion source, the electron cyclotron resonance (ECR) provides; thus an alternative ion source is needed. This can be expected from laser-produced plasmas, where dramatically new types of ion generation have been observed. Experiments with rather modest lasers have confirmed operation with one million pulses of 1 Hz, and 10{sup 11} C{sup 4+} ions per pulse reached 2 GeV/u in the Dubna synchrotron. We review here the complexities of laser-plasma interactions to underline the unique and extraordinary possibilities that the laser ion source offers. The complexities are elaborated with respect to keV and MeV ion generation, nonlinear (ponderomotive) forces, self-focusing, resonances and ``hot`` electrons, parametric instabilities, double-layer effects, and the few ps stochastic pulsation (stuttering). Recent experiments with the laser ion source have been analyzed to distinguish between the ps and ns interaction, and it was discovered that one mechanism of highly charged ion generation is the electron impact ionization (EII) mechanism, similar to the ECR, but with so much higher plasma densities that the required very large number of ions per pulse are produced. (author).

  1. Ion beam induced charge characterisation of a silicon microdosimeter using a heavy ion microprobe

    Science.gov (United States)

    Cornelius, Iwan; Siegele, Rainer; Rosenfeld, Anatoly B.; Cohen, David D.

    2002-05-01

    An ion beam induced charge (IBIC) facility has been added to the existing capabilities of the ANSTO heavy ion microprobe and the results of the first measurements are presented. Silicon on insulator (SOI) diode arrays with microscopic junction sizes have recently been proposed as microdosimeters for hadron therapy. A 20 MeV carbon beam was used to perform IBIC imaging of a 10 μm thick SOI device.

  2. Sol-gel transition of charged fibrils composed of a model amphiphilic peptide.

    Science.gov (United States)

    Owczarz, Marta; Bolisetty, Sreenath; Mezzenga, Raffaele; Arosio, Paolo

    2015-01-01

    We characterized the sol-gel transition of positively charged fibrils composed of the model amphiphilic peptide RADARADARADARADA (RADA 16-I) using a combination of microscopy, light scattering, microrheology and rheology techniques, and we investigated the dependence of the hydrogel formation on fibril concentration and ionic strength. The peptide is initially present as a dispersion of short rigid fibrils with average length of about 100 nm. During incubation, the fibrils aggregate irreversibly into longer fibrils and fibrillar aggregates. At peptide concentrations in the range 3-6.5 g/L, the fibrillar aggregates form a weak gel network which can be destroyed upon dilution. Percolation occurs without the formation of a nematic phase at a critical peptide concentration which decreases with increasing ionic strength. The gel structure can be well described in the frame of the fractal gel theory considering the network as a collection of fibrillar aggregates characterized by self-similar structure with a fractal dimension of 1.34.

  3. Modulating charge transfer through cyclic D,L-alpha-peptide self-assembly.

    Science.gov (United States)

    Horne, W Seth; Ashkenasy, Nurit; Ghadiri, M Reza

    2005-02-04

    We describe a concise, solid support-based synthetic method for the preparation of cyclic d,l-alpha-peptides bearing 1,4,5,8-naphthalenetetracarboxylic acid diimide (NDI) side chains. Studies of the structural and photoluminescence properties of these molecules in solution show that the hydrogen bond-directed self-assembly of the cyclic d,l-alpha-peptide backbone promotes intermolecular NDI excimer formation. The efficiency of NDI charge transfer in the resulting supramolecular assemblies is shown to depend on the length of the linker between the NDI and the peptide backbone, the distal NDI substituent, and the number of NDIs incorporated in a given structure. The design rationale and synthetic strategies described here should provide a basic blueprint for a series of self-assembling cyclic d,l-alpha-peptide nanotubes with interesting optical and electronic properties.

  4. Modulating Charge Transfer Through Cyclic D,L α-Peptide Self-Assembly

    Science.gov (United States)

    Horne, W. Seth; Ashkenasy, Nurit; Ghadiri, M. Reza

    2007-01-01

    We describe a concise solid support-based synthetic method for the preparation of cyclic D,L α-peptides bearing 1,4,5,8-naphthalenetetracarboxylic diimide (NDI) side chains. Studies of the structural and photoluminescence properties of these molecules in solution show that the hydrogen bond directed self-assembly of the cyclic D,L α-peptide backbone promotes intermolecular NDI excimer formation. The efficiency of NDI charge transfer in the resulting supramolecular assemblies is shown to depend on the length of the linker between the NDI and the peptide backbone, the distal NDI substituent, and the number of NDIs incorporated in a given structure. The design rationale and synthetic strategies described here should provide a basic blueprint for a series of self-assembling cyclic D,L α-peptide nanotubes with interesting optical and electronic properties. PMID:15624124

  5. Electronic transitions in highly charged ion-atom collisions

    Science.gov (United States)

    Schmidt-Böcking, H.; Ullrich, J.; Schuch, R.; Olson, R. E.; Dörner, R.

    1989-09-01

    Three different aspects of electronic transitions in fast, highly charged ion-atom collisions are discussed. First, experimental data and n-CTMC calculations for differential multiple ionization cross sections of 1.4 {MeV}/{u} U 32+on rare gas atoms are presented. It is shown that the electronic motion has a dramatic influence on the kinematics of the emitted particles (in particular the nuclei). The possibility is discussed to measure in fast ionizing processes by a recoil ion-projectile coincidence technique the internal sum momentum of "electron clusters" in atoms. This new "technique" opens a new field of atomic structure research at high-energy heavy-ion accelerators. Second, the use of the H-like heavy ions as projectiles is discussed to measure, through observable interference structures, static and dynamic properties of transiently formed superheavy quasimolecular systems. Third, the "ancient" gas target-solid target difference in the impact-parameter dependence of K-shell ionization in nearly symmetric ion-atom collisions is presented. This severe discrepancy between gas and solid still remains an unsolved fundamental problem in the field of inner-shell ionization in the MO regime.

  6. Charge exchange spectroscopy as a fast ion diagnostic on TEXTORa)

    Science.gov (United States)

    Delabie, E.; Jaspers, R. J. E.; von Hellermann, M. G.; Nielsen, S. K.; Marchuk, O.

    2008-10-01

    An upgraded charge exchange spectroscopy diagnostic has been taken into operation at the TEXTOR tokamak. The angles of the viewing lines with the toroidal magnetic field are close to the pitch angles at birth of fast ions injected by one of the neutral beam injectors. Using another neutral beam for active spectroscopy, injected counter the direction in which fast ions injected by the first beam are circulating, we can simultaneously measure a fast ion tail on the blue wing of the Dα spectrum while the beam emission spectrum is Doppler shifted to the red wing. An analysis combining the two parts of the spectrum offers possibilities to improve the accuracy of the absolute (fast) ion density profiles. Fast beam modulation or passive viewing lines cannot be used for background subtraction on this diagnostic setup and therefore the background has to be modeled and fitted to the data together with a spectral model for the slowing down feature. The analysis of the fast ion Dα spectrum obtained with the new diagnostic is discussed.

  7. Two-photon processes in highly charged ions

    Energy Technology Data Exchange (ETDEWEB)

    Jahrsetz, Thorsten

    2015-03-05

    Two-photon processes are atomic processes in which an atom interacts simultaneously with two photons. Such processes describe a wide range of phenomena, such as two-photon decay and elastic or inelastic scattering of photons. In recent years two-photon processes involving highly charged heavy ions have become an active area of research. Such studies do not only consider the total transition or scattering rates but also their angular and polarization dependence. To support such examinations in this thesis I present a theoretical framework to describe these properties in all two-photon processes with bound initial and final states and involving heavy H-like or He-like ions. I demonstrate how this framework can be used in some detailed studies of different two-photon processes. Specifically a detailed analysis of two-photon decay of H-like and He-like ions in strong external electromagnetic fields shows the importance of considering the effect of such fields for the physics of such systems. Furthermore I studied the elastic Rayleigh as well as inelastic Raman scattering by heavy H-like ions. I found a number of previously unobserved phenomena in the angular and polarization dependence of the scattering cross-sections that do not only allow to study interesting details of the electronic structure of the ion but might also be useful for the measurement of weak physical effects in such systems.

  8. Electron Flood Charge Compensation Device for Ion Trap Secondary Ion Mass Spectrometry

    Energy Technology Data Exchange (ETDEWEB)

    Appelhans, Anthony David; Ward, Michael Blair; Olson, John Eric

    2002-11-01

    During secondary ion mass spectrometry (SIMS) analyses of organophosphorous compounds adsorbed onto soils, the measured anion signals were lower than expected and it was hypothesized that the low signals could be due to sample charging. An electron flood gun was designed, constructed and used to investigate sample charging of these and other sample types. The flood gun was integrated into one end cap of an ion trap secondary ion mass spectrometer and the design maintained the geometry of the self-stabilizing extraction optics used in this instrument. The SIMION ion optics program was used to design the flood gun, and experimental results agreed with the predicted performance. Results showed the low anion signals from the soils were not due to sample charging. Other insulating and conducting samples were tested using both a ReO4- and a Cs+ primary ion beam. The proximity of the sample and electron source to the ion trap aperture resulted in generation of background ions in the ion trap via electron impact (EI) ionization during the period the electron gun was flooding the sample region. When using the electron gun with the ReO4- primary beam, the required electron current was low enough that the EI background was negligible; however, the high electron flood current required with the Cs+ beam produced background EI ions that degraded the quality of the mass spectra. The consequences of the EI produced cations will have to be evaluated on a sample-by-sample basis when using electron flood. It was shown that the electron flood gun could be intentionally operated to produce EI spectra in this instrument. This offers the opportunity to measure, nearly simultaneously, species evaporating from a sample, via EI, and species bound to the surface, via SIMS.

  9. An Ion Switch Regulates Fusion of Charged Membranes

    Science.gov (United States)

    Siepi, Evgenios; Lutz, Silke; Meyer, Sylke; Panzner, Steffen

    2011-01-01

    Here we identify the recruitment of solvent ions to lipid membranes as the dominant regulator of lipid phase behavior. Our data demonstrate that binding of counterions to charged lipids promotes the formation of lamellar membranes, whereas their absence can induce fusion. The mechanism applies to anionic and cationic liposomes, as well as the recently introduced amphoteric liposomes. In the latter, an additional pH-dependent lipid salt formation between anionic and cationic lipids must occur, as indicated by the depletion of membrane-bound ions in a zone around pH 5. Amphoteric liposomes fuse under these conditions but form lamellar structures at both lower and higher pH values. The integration of these observations into the classic lipid shape theory yielded a quantitative link between lipid and solvent composition and the physical state of the lipid assembly. The key parameter of the new model, κ(pH), describes the membrane phase behavior of charged membranes in response to their ion loading in a quantitative way. PMID:21575575

  10. Ferroelectric Plasma Source for Heavy Ion Beam Charge Neutralization

    CERN Document Server

    Efthimion, Philip; Gilson, Erik P; Grisham, Larry; Logan, B G; Waldron, William; Yu, Simon

    2005-01-01

    Plasmas are employed as a medium for charge neutralizing heavy ion beams to allow them to focus to a small spot size. Calculations suggest that plasma at a density of 1-100 times the ion beam density and at a length ~ 0.1-1 m would be suitable. To produce 1 meter plasma, large-volume plasma sources based upon ferroelectric ceramics are being considered. These sources have the advantage of being able to increase the length of the plasma and operate at low neutral pressures. The source will utilize the ferroelectric ceramic BaTiO3 to form metal plasma. The drift tube inner surface of the Neutralized Drift Compression Experiment (NDCX) will be covered with ceramic. High voltage (~ 1-5 kV) is applied between the drift tube and the front surface of the ceramic by placing a wire grid on the front surface. A prototype ferroelectric source 20 cm long produced plasma densities ~ 5x1011 cm-3. The source was integrated into the experiment and successfully charge neutralized the K ion beam. Presently, the 1 meter source ...

  11. Advancement of highly charged ion beam production by superconducting ECR ion source SECRAL (invited)

    Science.gov (United States)

    Sun, L.; Guo, J. W.; Lu, W.; Zhang, W. H.; Feng, Y. C.; Yang, Y.; Qian, C.; Fang, X.; Ma, H. Y.; Zhang, X. Z.; Zhao, H. W.

    2016-02-01

    At Institute of Modern Physics (IMP), Chinese Academy of Sciences (CAS), the superconducting Electron Cyclotron Resonance (ECR) ion source SECRAL (Superconducting ECR ion source with Advanced design in Lanzhou) has been put into operation for about 10 years now. It has been the main working horse to deliver intense highly charged heavy ion beams for the accelerators. Since its first plasma at 18 GHz, R&D work towards more intense highly charged ion beam production as well as the beam quality investigation has never been stopped. When SECRAL was upgraded to its typical operation frequency 24 GHz, it had already showed its promising capacity of very intense highly charged ion beam production. And it has also provided the strong experimental support for the so called scaling laws of microwave frequency effect. However, compared to the microwave power heating efficiency at 18 GHz, 24 GHz microwave heating does not show the ω2 scale at the same power level, which indicates that microwave power coupling at gyrotron frequency needs better understanding. In this paper, after a review of the operation status of SECRAL with regard to the beam availability and stability, the recent study of the extracted ion beam transverse coupling issues will be discussed, and the test results of the both TE01 and HE11 modes will be presented. A general comparison of the performance working with the two injection modes will be given, and a preliminary analysis will be introduced. The latest results of the production of very intense highly charged ion beams, such as 1.42 emA Ar12+, 0.92 emA Xe27+, and so on, will be presented.

  12. Advancement of highly charged ion beam production by superconducting ECR ion source SECRAL (invited)

    Energy Technology Data Exchange (ETDEWEB)

    Sun, L., E-mail: sunlt@impcas.ac.cn; Lu, W.; Zhang, W. H.; Feng, Y. C.; Qian, C.; Ma, H. Y.; Zhang, X. Z.; Zhao, H. W. [Institute of Modern Physics, CAS, Lanzhou 730000 (China); Guo, J. W.; Yang, Y.; Fang, X. [Institute of Modern Physics, CAS, Lanzhou 730000 (China); University of Chinese Academy of Sciences, Beijing 100049 (China)

    2016-02-15

    At Institute of Modern Physics (IMP), Chinese Academy of Sciences (CAS), the superconducting Electron Cyclotron Resonance (ECR) ion source SECRAL (Superconducting ECR ion source with Advanced design in Lanzhou) has been put into operation for about 10 years now. It has been the main working horse to deliver intense highly charged heavy ion beams for the accelerators. Since its first plasma at 18 GHz, R&D work towards more intense highly charged ion beam production as well as the beam quality investigation has never been stopped. When SECRAL was upgraded to its typical operation frequency 24 GHz, it had already showed its promising capacity of very intense highly charged ion beam production. And it has also provided the strong experimental support for the so called scaling laws of microwave frequency effect. However, compared to the microwave power heating efficiency at 18 GHz, 24 GHz microwave heating does not show the ω{sup 2} scale at the same power level, which indicates that microwave power coupling at gyrotron frequency needs better understanding. In this paper, after a review of the operation status of SECRAL with regard to the beam availability and stability, the recent study of the extracted ion beam transverse coupling issues will be discussed, and the test results of the both TE{sub 01} and HE{sub 11} modes will be presented. A general comparison of the performance working with the two injection modes will be given, and a preliminary analysis will be introduced. The latest results of the production of very intense highly charged ion beams, such as 1.42 emA Ar{sup 12+}, 0.92 emA Xe{sup 27+}, and so on, will be presented.

  13. Ion Transport through Diffusion Layer Controlled by Charge Mosaic Membrane

    Directory of Open Access Journals (Sweden)

    Akira Yamauchi

    2012-01-01

    Full Text Available The kinetic transport behaviors in near interface of the membranes were studied using commercial anion and cation exchange membrane and charge mosaic membrane. Current-voltage curve gave the limiting current density that indicates the ceiling of conventional flux. From chronopotentiometry above the limiting current density, the transition time was estimated. The thickness of boundary layer was derived with conjunction with the conventional limiting current density and the transition time from steady state flux. On the other hand, the charge mosaic membrane was introduced in order to examine the ion transport on the membrane surface in detail. The concentration profile was discussed by the kinetic transport number with regard to the water dissociation (splitting on the membrane surface.

  14. PEPTIDE SOLUBILITY, STRUCTURE AND CHARGE POSITION EFFECT ON ADSORPTION BY ALUMINIUM HYDROXIDE

    Directory of Open Access Journals (Sweden)

    Mary Trujillo

    2008-04-01

    Full Text Available Solubility, structure and position of charges in a peptide antigen sequence can be mentioned as being amongst the basic features of adsorption. In order to study their effect on adsorption, seven analogue series were synthesized from a MSP-1 peptide sequence by systematically replacing each one of the positions in the peptide sequence by aspartic acid, glutamic acid, serine, alanine, asparagine, glutamine or lysine. Such modifications in analogue peptide sequences showed a non-regular tendency regarding solubility and adsorption data. Aspartic acid and Glutamic acid analogue series showed great improvements in adsorption, especially in peptides where Lysine in position 6 and Arginine in position 13 were replaced. Solubility of position 5 analogue was greater than the position 6 analogue in Aspartic acid series; however, the position 6 analogue showed best adsorption results whilst the Aspartic acid in position 5 analogue showed no adsorption in the same conditions. Nuclear Magnetic Resonance structural analysis revealed differences in the -helical structureextension between these analogues. The Aspartic acid in position 6, located in the polar side of the helix, may allow this analogueto fit better onto the adsorption regions suggesting that the local electrostatic charge is responsible for this behavior.

  15. Gas-phase doubly charged complexes of cyclic peptides with copper in +1, +2 and +3 formal oxidation states: formation, structures and electron capture dissociation.

    Science.gov (United States)

    Afonso, Carlos; Tabet, Jean-Claude; Giorgi, Gianluca; Tureček, František

    2012-02-01

    Copper complexes with a cyclic D-His-β-Ala-L-His-L-Lys and all-L-His-β-Ala-His-Lys peptides were generated by electrospray which were doubly charged ions that had different formal oxidation states of Cu(I), Cu(II) and Cu(III) and different protonation states of the peptide ligands. Electron capture dissociation showed no substantial differences between the D-His and L-His complexes. All complexes underwent peptide cross-ring cleavages upon electron capture. The modes of ring cleavage depended on the formal oxidation state of the Cu ion and peptide protonation. Density functional theory (DFT) calculations, using the B3LYP with an effective core potential at Cu and M06-2X functionals, identified several precursor ion structures in which the Cu ion was threecoordinated to pentacoordinated by the His and Lys side-chain groups and the peptide amide or enolimine groups. The electronic structure of the formally Cu(III) complexes pointed to an effective Cu(I) oxidation state with the other charge residing in the peptide ligand. The relative energies of isomeric complexes of the [Cu(c-HAHK + H)](2+) and [Cu(c-HAHK - H)](2+) type with closed electronic shells followed similar orders when treated by the B3LYP and M06-2X functionals. Large differences between relative energies calculated by these methods were obtained for open-shell complexes of the [Cu(c-HAHK)](2+) type. Charge reduction resulted in lowering the coordination numbers for some Cu complexes that depended on the singlet or triplet spin state being formed. For [Cu(c-HAHK - H)](2+) complexes, solution H/D exchange involved only the N-H protons, resulting in the exchange of up to seven protons, as established by ultra-high mass resolution measurements. Contrasting the experiments, DFT calculations found the lowest energy structures for the gas-phase ions that were deprotonated at the peptide C(α) positions.

  16. Modelling surface restructuring by slow highly charged ions

    Science.gov (United States)

    Wachter, G.; Tőkési, K.; Betz, G.; Lemell, C.; Burgdörfer, J.

    2013-12-01

    We theoretically investigate surface modifications on alkaline earth halides due to highly charged ion impact, focusing on recent experimental evidence for both etch pit and nano-hillock formation on CaF2 (A.S. El-Said et al., Phys. Rev. Lett. 109, (2012) 117602 [1]). We discuss mechanisms for converting the projectile potential and kinetic energies into thermal energy capable of changing the surface structure. A proof-of-principle classical molecular dynamics simulation suggests the existence of two thresholds which we associate with etch pit and nano-hillock formation in qualitative agreement with experiment.

  17. Modelling surface restructuring by slow highly charged ions

    Energy Technology Data Exchange (ETDEWEB)

    Wachter, G., E-mail: georg.wachter@tuwien.ac.at [Institute for Theoretical Physics, Vienna University of Technology, Wiedner Hauptstraße 8-10, A-1040 Vienna (Austria); Tőkési, K. [Institute of Nuclear Research of the Hungarian Academy of Science (ATOMKI), H-4001 Debrecen, P.O. Box 51 (Hungary); Betz, G. [Institute for Applied Physics, Vienna University of Technology, Wiedner Hauptstraße 8-10, A-1040 Vienna (Austria); Lemell, C.; Burgdörfer, J. [Institute for Theoretical Physics, Vienna University of Technology, Wiedner Hauptstraße 8-10, A-1040 Vienna (Austria)

    2013-12-15

    We theoretically investigate surface modifications on alkaline earth halides due to highly charged ion impact, focusing on recent experimental evidence for both etch pit and nano-hillock formation on CaF{sub 2} (A.S. El-Said et al., Phys. Rev. Lett. 109, (2012) 117602 [1]). We discuss mechanisms for converting the projectile potential and kinetic energies into thermal energy capable of changing the surface structure. A proof-of-principle classical molecular dynamics simulation suggests the existence of two thresholds which we associate with etch pit and nano-hillock formation in qualitative agreement with experiment.

  18. Implications of lipid monolayer charge characteristics on their selective interactions with a short antimicrobial peptide.

    Science.gov (United States)

    Ciumac, Daniela; Campbell, Richard A; Xu, Hai; Clifton, Luke A; Hughes, Arwel V; Webster, John R P; Lu, Jian R

    2017-02-01

    Many antimicrobial peptides (AMPs) target bacterial membranes and they kill bacteria by causing structural disruptions. One of the fundamental issues however lies in the selective responses of AMPs to different cell membranes as a lack of selectivity can elicit toxic side effects to mammalian host cells. A key difference between the outer surfaces of bacterial and mammalian cells is the charge characteristics. We report a careful study of the binding of one of the representative AMPs, with the general sequence G(IIKK)4I-NH2 (G4), to the spread lipid monolayers of DPPC (1,2-dipalmitoyl-sn-glycero-3-phosphocholine) and DPPG (1,2-dipalmitoyl-sn-glycero-3-phospho-(1'-rac-glycerol) (sodium salt)) mimicking the charge difference between them, using the combined measurements from Langmuir trough, Brewster angle microscopy (BAM) and neutron reflection (NR). The difference in pressure rise upon peptide addition into the subphase clearly demonstrated the different interactions arising from different lipid charge features. Morphological changes from the BAM imaging confirmed the association of the peptide into the lipid monolayers, but there was little difference between them. However, NR studies revealed that the peptide bound 4 times more onto the DPPG monolayer than onto the DPPC monolayer. Importantly, whilst the peptide could only be associated with the head groups of DPPC it was well penetrated into the entire DPPG monolayer, showing that the electrostatic interaction strengthened the hydrophobic interaction and that the combined molecular interactive processes increased the power of G4 in disrupting the charged membranes. The results are discussed in the context of general antibacterial actions as observed from other AMPs and membrane lytic actions.

  19. Delta-sleep inducing peptide entrapment in the charged macroporous matrices

    Energy Technology Data Exchange (ETDEWEB)

    Sukhanova, Tatiana V., E-mail: sukhanovat@mail.ru [Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Laboratory of Cell Interactions, Miklukho-Maklaya st., 16/10 Moscow (Russian Federation); Artyukhov, Alexander A.; Gurevich, Yakov M.; Semenikhina, Marina A. [Mendeleyev University of Chemical Technology of Russia, Research and Teaching Center “Biomaterials”, Miusskaya sq., 9 Moscow (Russian Federation); Prudchenko, Igor A. [Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Laboratory of Peptide Chemistry, Miklukho-Maklaya st., 16/10 Moscow (Russian Federation); Shtilman, Mikhail I. [Mendeleyev University of Chemical Technology of Russia, Research and Teaching Center “Biomaterials”, Miusskaya sq., 9 Moscow (Russian Federation); Markvicheva, Elena A. [Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Laboratory Polymers for Biology, Miklukho-Maklaya st., 16/10 Moscow (Russian Federation)

    2014-09-01

    Various biomolecules, for example proteins, peptides etc., entrapped in polymer matrices, impact interactions between matrix and cells, including stimulation of cell adhesion and proliferation. Delta-sleep inducing peptide (DSIP) possesses numerous beneficial properties, including its abilities in burn treatment and neuronal protection. DSIP entrapment in two macroporous polymer matrices based on copolymer of dimethylaminoethyl methacrylate and methylen-bis-acrylamide (Co-DMAEMA-MBAA) and copolymer of acrylic acid and methylen-bis-acrylamide (Co-AA-MBAA) has been studied. Quite 100% of DSIP has been entrapped into positively charged Co-DMAEMA-MBAA matrix, while the quantity of DSIP adsorbed on negatively charged Co-AA-MBAA was only 2–6%. DSIP release from Co-DMAEMA-MBAA was observed in saline solutions (0.9% NaCl and PBS) while there was no DSIP release in water or 25% ethanol, thus ionic strength was a reason of this process. - Graphical abstract: Delta-sleep inducing peptide possessing neuroprotective and wound healing properties was adsorbed on positively charged polymer matrix Co-DMAEMA-MBAA for tissue engineering. The peptide released from Co-DMAEMA-MBAA matrix in function of ionic strength of solution, pH decreasing stimulated peptide release from Co-DMAEMA-MBAA matrix for 3 h. This construction could be a base of new bioactive implants. - Highlights: • Macroporous positively charged Co-DMAEMA-MBAA matrix pore size was 20–35 μm. • DSIP was adsorbed on Co-DMAEMA-MBAA totally in 16 h. • Its release depends on ionic strength of solution (no release in 25% ethanol or water). • Co-DMAEMA-MBAA matrix swelling depends on pH and ionic strength of solution. • DSIP is destroyed in PBS and 0.9% NaCl in 5 days, but in water it was more stable.

  20. Analysis of Ion Charge States in Solar Wind and CMEs

    Indian Academy of Sciences (India)

    Arati Dasgupta; J. M. Laming

    2008-03-01

    We discuss needs in dielectronic recombination data motivated by recent work directed at a quantitative understanding of ion charge states of various elements observed in situ in the solar wind and CMEs. The competing processes of ionization and recombination lead to departures from collision ionization equilibrium. The use of this as a diagnostic of acceleration and heating processes of the solar wind and CMEs is sensitive to the accuracy of the atomic rates in a way that steady state ionization equilibrium plasmas are not. The most pressing need is dielectronic recombination rates for ions Fe8+-12+. These are among the dominant species observed in various regions of the solar wind and CMEs, and in remotely sensed EUV spectra.

  1. Highly confined ions store charge more efficiently in supercapacitors.

    Science.gov (United States)

    Merlet, C; Péan, C; Rotenberg, B; Madden, P A; Daffos, B; Taberna, P-L; Simon, P; Salanne, M

    2013-01-01

    Liquids exhibit specific properties when they are adsorbed in nanoporous structures. This is particularly true in the context of supercapacitors, for which an anomalous increase in performance has been observed for nanoporous electrodes. This enhancement has been traditionally attributed in experimental studies to the effect of confinement of the ions from the electrolyte inside sub-nanometre pores, which is accompanied by their partial desolvation. Here we perform molecular dynamics simulations of realistic supercapacitors and show that this picture is correct at the microscopic scale. We provide a detailed analysis of the various environments experienced by the ions. We pick out four different adsorption types, and we, respectively, label them as edge, planar, hollow and pocket sites upon increase of the coordination of the molecular species by carbon atoms from the electrode. We show that both the desolvation and the local charge stored on the electrode increase with the degree of confinement.

  2. Influence of ion size and charge on osmosis.

    Science.gov (United States)

    Cannon, James; Kim, Daejoong; Maruyama, Shigeo; Shiomi, Junichiro

    2012-04-12

    Osmosis is fundamental to many processes, such as in the function of biological cells and in industrial desalination to obtain clean drinking water. The choice of solute in industrial applications of osmosis is highly important in maximizing efficiency and minimizing costs. The macroscale process of osmosis originates from the nanoscale properties of the solvent, and therefore an understanding of the mechanisms of how these properties determine osmotic strength can be highly useful. For this reason, we have undertaken molecular dynamics simulations to systematically study the influence of ion size and charge on the strength of osmosis of water through carbon nanotube membranes. Our results show that strong osmosis occurs under optimum conditions of ion placement near the region of high water density near the membrane wall and of maintenance of a strong water hydration shell around the ions. The results in turn allow greater insight into the origin of the strong osmotic strength of real ions such as NaCl. Finally, in terms of practical simulation, we highlight the importance of avoiding size effects that can occur if the simulation cell is too small.

  3. Cationic Net Charge and Counter Ion Type as Antimicrobial Activity Determinant Factors of Short Lipopeptides

    Science.gov (United States)

    Greber, Katarzyna E.; Dawgul, Malgorzata; Kamysz, Wojciech; Sawicki, Wieslaw

    2017-01-01

    To get a better insight into the antimicrobial potency of short cationic lipopeptides, 35 new entities were synthesized using solid phase peptide strategy. All newly obtained lipopeptides were designed to be positively charged from +1 to +4. This was achieved by introducing basic amino acid - lysine - into the lipopeptide structure and had a hydrophobic fatty acid chain attached. Lipopeptides were subjected to microbiological tests using reference strains of Gram-negative bacteria: Escherichia coli, Klebsiella pneumoniae, Proteus vulgaris, Pseudomonas aeruginosa, Gram-positive bacteria: Staphylococcus aureus, Staphylococcus epidermidis, Bacillus subtilis, Enterococcus faecalis, and fungi: Candida albicans, Candida tropicalis, Aspergillus brasiliensis. The minimum inhibitory concentration (MIC), minimum bactericidal concentration (MBC) and minimal fungicidal concentration (MFC) were established for each strain. The toxicity toward human cells was determined by hemolysis tests via minimum hemolytic concentration (MHC) determination. The effect of the trifluoroacetic acid (TFA) counter ion on the antimicrobial activity of lipopeptides was also examined by its removing and performing the antimicrobial tests using counter ion-free compounds. The study shows that lipopeptides are more potent against Gram-positive than Gram-negative strains. It was revealed that positive charge equals at least +2 is a necessary condition to observe significant antimicrobial activity, but only when it is balanced with a proper length of hydrophobic fatty acid chain. The hemolytic activity of lipopeptides strongly depends on amino acid composition of the hydrophilic portion of the molecule as well as fatty acid chain length. Compounds endowed with a greater positive charge were more toxic to human erythrocytes. This should be considered during new lipopeptide molecules design. Our studies also revealed the TFA counter ion has no significant effect on the antimicrobial behavior of cationic

  4. Energy dissipation of highly charged ions on Al oxide films.

    Science.gov (United States)

    Lake, R E; Pomeroy, J M; Sosolik, C E

    2010-03-03

    Slow highly charged ions (HCIs) carry a large amount of potential energy that can be dissipated within femtoseconds upon interaction with a surface. HCI-insulator collisions result in high sputter yields and surface nanofeature creation due to strong coupling between the solid's electronic system and lattice. For HCIs interacting with Al oxide, combined experiments and theory indicate that defect mediated desorption can explain reasonably well preferential O atom removal and an observed threshold for sputtering due to potential energy. These studies have relied on measuring mass loss on the target substrate or probing craters left after desorption. Our approach is to extract highly charged ions onto the Al oxide barriers of metal-insulator-metal tunnel junctions and measure the increased conductance in a finished device after the irradiated interface is buried under the top metal layer. Such transport measurements constrain dynamic surface processes and provide large sets of statistics concerning the way individual HCI projectiles dissipate their potential energy. Results for Xe(q +) for q = 32, 40, 44 extracted onto Al oxide films are discussed in terms of postirradiation electrical device characteristics. Future work will elucidate the relationship between potential energy dissipation and tunneling phenomena through HCI modified oxides.

  5. Charge Breeding of Radioactive Ions in an Electron Cyclotron Resonance Ion Source(ECRIS) at ISOLDE

    CERN Multimedia

    Lindroos, M

    2002-01-01

    The development of an efficient charge breeding scheme for the next generation of RIB facilities will have a strong impact on the post-accelerator for several Radioactive Ion Beam (RIB) projects at European large scale facilities. At ISOLDE/CERN there will be the unique possibility to carry out experiments with the two possible charge breeding set-ups with a large variety of radioactive isotopes using identical injection conditions. One charge breeding set-up is the Penning trap/EBIS combination which feeds the REX-ISOLDE linear accelerator and which is in commissioning now. The second charge breeder is a new ECRIS PHOENIX developed at the ISN ion source laboratory at Grenoble. This ECRIS is now under investigation with a 14 GHz amplifier to characterize its performance. The experiments are accompanied by theoretical studies in computer simulations in order to optimize the capture of the ions in the ECRIS plasma. A second identical PHOENIX ECRIS which is under investigation at the Daresbury Laboratory is avai...

  6. Highly-charged-ion-induced electron emission from C-60 thin films

    NARCIS (Netherlands)

    Bodewits, E.; Hoekstra, R.; Kowarik, G.; Dobes, K.; Aumayr, F.

    2011-01-01

    The secondary electron yields as a result of highly charged ions impinging on clean Au(111) and thin films of C-60 on Au have been measured. This has been done for film thicknesses of one to five monolayers and several charge states of Ar and Xe ions. For all ions an increase of 35% in the secondary

  7. Additional considerations about the role of ion size in charge reversal

    Energy Technology Data Exchange (ETDEWEB)

    Martin-Molina, A; Hidalgo-Alvarez, R [Grupo de Fisica de Fluidos y Biocoloides, Departamento de Fisica Aplicada, Facultad de Ciencias, Universidad de Granada, Granada 18071 (Spain); Quesada-Perez, M, E-mail: almartin@ugr.e [Departamento de Fisica, Universidad de Jaen, Escuela Politecnica Superior de Linares, 23700 Linares, Jaen (Spain)

    2009-10-21

    The effect of the ion size on the charge reversal process is studied via canonical Monte Carlo simulation. To this end, a primitive model of electrolyte is used to analyze the electric double layer formed by an asymmetric electrolyte in the presence of a charged planar wall. Different values of ion diameters and surface charge densities are used so as to determine the conditions at which the charge reversal first occurs. For each case, the apparent surface charge density is calculated as a function of the distance from the charged wall for the different electrolyte concentrations in order to establish the minimal salt concentration required for the charge reversal. We will refer to this electrolyte concentration as the reversal concentration and will show how it depends on the surface charge density and on the ion size. From the apparent surface charge density profiles, the distance from the wall at which the charge reversal arises as well as its intensity can be also inferred.

  8. Theory for charge states of energetic oxygen ions in the earth's radiation belts

    Science.gov (United States)

    Spjeldvik, W. N.; Fritz, T. A.

    1978-01-01

    Fluxes of geomagnetically trapped energetic oxygen ions have been studied in detail. Ion distributions in radial locations below the geostationary orbit, energy spectra between 1 keV and 100 MeV, and the distribution over charge states have been computed for equatorially mirroring ions. Both ionospheric and solar wind oxygen ion sources have been considered, and it is found that the charge state distributions in the interior of the radiation belts are largely independent of the charge state characteristics of the sources. In the MeV range, oxygen ions prove to be a more sensitive probe for radiation belt dynamics than helium ions and protons.

  9. Molecular Simulations of Disulfide-Rich Venom Peptides with Ion Channels and Membranes

    Directory of Open Access Journals (Sweden)

    Evelyne Deplazes

    2017-02-01

    Full Text Available Disulfide-rich peptides isolated from the venom of arthropods and marine animals are a rich source of potent and selective modulators of ion channels. This makes these peptides valuable lead molecules for the development of new drugs to treat neurological disorders. Consequently, much effort goes into understanding their mechanism of action. This paper presents an overview of how molecular simulations have been used to study the interactions of disulfide-rich venom peptides with ion channels and membranes. The review is focused on the use of docking, molecular dynamics simulations, and free energy calculations to (i predict the structure of peptide-channel complexes; (ii calculate binding free energies including the effect of peptide modifications; and (iii study the membrane-binding properties of disulfide-rich venom peptides. The review concludes with a summary and outlook.

  10. Photoinitated charge separation in a hybrid titanium dioxide metalloporphyrin peptide material

    Science.gov (United States)

    Fry, H. Christopher; Liu, Yuzi; Dimitrijevic, Nada M.; Rajh, Tijana

    2014-08-01

    In natural systems, electron flow is mediated by proteins that spatially organize donor and acceptor molecules with great precision. Achieving this guided, directional flow of information is a desirable feature in photovoltaic media. Here, we design self-assembled peptide materials that organize multiple electronic components capable of performing photoinduced charge separation. Two peptides, c16-AHL3K3-CO2H and c16-AHL3K9-CO2H, self-assemble into fibres and provide a scaffold capable of binding a metalloporphyrin via histidine axial ligation and mineralize titanium dioxide (TiO2) on the lysine-rich surface of the resulting fibrous structures. Electron paramagnetic resonance studies of this self-assembled material under continuous light excitation demonstrate charge separation induced by excitation of the metalloporphyrin and mediated by the peptide assembly structure. This approach to dye-sensitized semiconducting materials offers a means to spatially control the dye molecule with respect to the semiconducting material through careful, strategic peptide design.

  11. Structure-dependent charge density as a determinant of antimicrobial activity of peptide analogues of defensin.

    Science.gov (United States)

    Bai, Yang; Liu, Shouping; Jiang, Ping; Zhou, Lei; Li, Jing; Tang, Charles; Verma, Chandra; Mu, Yuguang; Beuerman, Roger W; Pervushin, Konstantin

    2009-08-01

    Defensins are small (3-5 kDa) cysteine-rich cationic proteins found in both vertebrates and invertebrates constituting the front line of host innate immunity. Despite intensive research, bactericidal and cytotoxic mechanisms of defensins are still largely unknown. Moreover, we recently demonstrated that small peptides derived from defensins are even more potent bactericidal agents with less toxicity toward host cells. In this paper, structures of three C-terminal (R36-K45) analogues of human beta-defensin-3 were studied by 1H NMR spectroscopy and extensive molecular dynamics simulations. Because of indications that these peptides might target the inner bacterial membrane, they were reconstituted in dodecylphosphocholine or dodecylphosphocholine/1-palmitoyl-2-oleoyl-sn-glycero-3-[phospho-rac-(1-glycerol)] mixed micelles, and lipid bicelles mimicking the phospholipid-constituted bilayer membrane of mammalian and bacterial cells. The results show that the binding affinity and partitioning into the lipid phase and the ability to dimerize and accrete well-defined structures upon interactions with lipid membranes contribute to compactization of positive charges within peptide oligomers. The peptide charge density, mediated by corresponding three-dimensional structures, was found to directly correlate with the antimicrobial activity. These novel observations may provide a new rationale for the design of improved antimicrobial agents.

  12. Development of a Kingdon ion trap system for trapping externally injected highly charged ions.

    Science.gov (United States)

    Numadate, Naoki; Okada, Kunihiro; Nakamura, Nobuyuki; Tanuma, Hajime

    2014-10-01

    We have developed a Kingdon ion trap system for the purpose of the laboratory observation of the x-ray forbidden transitions of highly charged ions (HCIs). Externally injected Ar(q+) (q = 5-7) with kinetic energies of 6q keV were successfully trapped in the ion trap. The energy distribution of trapped ions is discussed in detail on the basis of numerical simulations. The combination of the Kingdon ion trap and the time-of-flight mass spectrometer enabled us to measure precise trapping lifetimes of HCIs. As a performance test of the instrument, we measured trapping lifetimes of Ar(q+) (q = 5-7) under a constant number density of H2 and determined the charge-transfer cross sections of Ar(q+)(q = 5, 6)-H2 collision systems at binary collision energies of a few eV. It was confirmed that the present cross section data are consistent with previous data and the values estimated by some scaling formula.

  13. Probing the Nature of Charge Transfer at Nano-Bio Interfaces: Peptides on Metal Oxide Nanoparticles.

    Science.gov (United States)

    Tarakeshwar, Pilarisetty; Palma, Julio L; Holland, Gregory P; Fromme, Petra; Yarger, Jeffery L; Mujica, Vladimiro

    2014-10-16

    Characterizing the nano-bio interface has been a long-standing endeavor in the quest for novel biosensors, biophotovoltaics, and biocompatible electronic devices. In this context, the present computational work on the interaction of two peptides, A6K (Ac-AAAAAAK-NH2) and A7 (Ac-AAAAAAA-NH2) with semiconducting TiO2 nanoparticles is an effort to understand the peptide-metal oxide nanointerface. These investigations were spurred by recent experimental observations that nanostructured semiconducting metal oxides templated with A6K peptides not only stabilize large proteins like photosystem-I (PS-I) but also exhibit enhanced charge-transfer characteristics. Our results indicate that α-helical structures of A6K are not only energetically more stabilized on TiO2 nanoparticles, but the resulting hybrids also exhibit enhanced electron transfer characteristics. This enhancement can be attributed to substantial changes in the electronic characteristics at the peptide-TiO2 interface. Apart from understanding the mechanism of electron transfer (ET) in peptide-stabilized PS-I on metal oxide nanoparticles, the current work also has implications in the development of novel solar cells and photocatalysts.

  14. Effects of Charge in Heavy Ions on Solitary Kinetic Alfvén Waves in Double-Ion Plasmas

    Institute of Scientific and Technical Information of China (English)

    YANG Lei; WU De-Jin

    2006-01-01

    @@ After the charge of heavy ions is considered, a Sagdeev equation is obtained for the solitary kinetic Alfvén waves (SKAWs) in a low-β(me/mp<<β<<1 or mp/me>>α>>1), three-component (electrons, protons, and highly charged heavy ions) plasma. Numerical results show that the charge number q of heavy ions can cause the width of the solitary structure to decrease, but increase for the maximum of electron density nem≤1.2 and the initial abundance of heavy ions Cb0 ≤ 0.1. The parallel phase speed of the waves increases with larger q.

  15. Investigation of peptide based surface functionalization for copper ions detection using an ultrasensitive mechanical microresonator

    DEFF Research Database (Denmark)

    Cagliani, Alberto; Fischer, Lee MacKenzie; Rasmussen, Jakob Lyager

    2011-01-01

    In the framework of developing a portable label-free sensor for multi arrayed detection of heavy metals in drinking water, we present a mechanical resonator-based copper ions sensor, which uses a recently synthesized peptide Cysteine–Glycine–Glycine–Histidine (CGGH) and the l-Cysteine (Cys) peptide...... devices to detect a concentration of 10μM of copper in water, we regenerate the surface by removing the copper ions from the functionalization layer using EDTA....

  16. Lipid dependence of membrane anchoring properties and snorkeling behavior of aromatic and charged residues in transmembrane peptides.

    Science.gov (United States)

    Strandberg, Erik; Morein, Sven; Rijkers, Dirk T S; Liskamp, Rob M J; van der Wel, Patrick C A; Killian, J Antoinette

    2002-06-11

    31P NMR spectroscopy was used to investigate the effects of transmembrane alpha-helical peptides with different flanking residues on the phase behavior of phosphatidylethanolamine and phosphatidylethanolamine/phosphatidylglycerol (molar ratio 7:3) model membranes. It was found that tryptophan-flanked (WALP) peptides and lysine-flanked (KALP) peptides both promote formation of nonlamellar phases in these lipid systems in a mismatch-dependent manner. Based on this mismatch dependence, it was concluded that the effective hydrophobic length of KALP peptides is considerably shorter than that of the corresponding WALP peptides. Peptides with other positively charged residues showed very similar effects as KALP. The results suggest that the peptides have a well-defined effective hydrophobic length, which is different for charged and aromatic flanking residues, but which is independent of the precise chemical nature of the side chain. Strikingly, the effective length of KALP peptides in the lipid systems investigated here is much smaller than that previously found for the same peptides in phosphatidylcholine. This suggests that snorkeling of lysine side chains, as proposed to occur in phosphatidylcholine, does not occur in lipid systems that are prone to form nonlamellar phases by themselves. This suggestion was supported by using peptides with shortened lysine side chains and by investigating the effects of mixtures of WALP and KALP peptides. The lipid dependency of the snorkeling behavior is explained by considering the free energy cost of snorkeling in relation to the free energy cost of the formation of nonlamellar phases.

  17. Ion-induced nucleation of dibutyl phthalate vapors on spherical and nonspherical singly and multiply charged polyethylene glycol ions.

    Science.gov (United States)

    Nasibulin, Albert G; de la Mora, Juan Fernandez; Kauppinen, Esko I

    2008-02-14

    Dibutyl phthalate vapor nucleation induced by positive polyethylene glycol (PEG) ions with controlled sizes and charges was experimentally studied. The ions were produced by electrospray ionization, classified in a high-resolution differential mobility analyzer, and studied in a nano condensation nucleus counter of the mixing type. Ionic radii of PEG varied from 0.52 to 1.56 nm, including from singly to quadruply charged ions. Some of these ions are fully stretched chains, other are spherical, and others have intermediate forms, all of them having been previously characterized by mobility and mass spectrometry studies. Activation of PEG1080(+2) requires a supersaturation almost as high as that required for small singly charged ions and higher than for PEG1080(+). This anomaly is explained by the Coulombic stretching of the ion into a long chain, where the two charged centers appear to be relatively decoupled from each other. The critical supersaturation for singly charged spherical ions falls below Thomson's (capillary) theory and even below the already low values seen previously for tetraheptyl ammonium bromide clusters. Spherical PEG4120(+2) falls close to the Thomson curve. The trends observed for slightly nonspherical PEG4120(+3) and highly nonspherical (but not quite linear) PEG4120(+4) are intermediate between those of multiply charged spheres and small singly charged ions.

  18. New development of laser ion source for highly charged ion beam production at Institute of Modern Physics (invited)

    Science.gov (United States)

    Zhao, H. Y.; Zhang, J. J.; Jin, Q. Y.; Liu, W.; Wang, G. C.; Sun, L. T.; Zhang, X. Z.; Zhao, H. W.

    2016-02-01

    A laser ion source based on Nd:YAG laser has been being studied at the Institute of Modern Physics for the production of high intensity high charge state heavy ion beams in the past ten years, for possible applications both in a future accelerator complex and in heavy ion cancer therapy facilities. Based on the previous results for the production of multiple-charged ions from a wide range of heavy elements with a 3 J/8 ns Nd:YAG laser [Zhao et al., Rev. Sci. Instrum. 85, 02B910 (2014)], higher laser energy and intensity in the focal spot are necessary for the production of highly charged ions from the elements heavier than aluminum. Therefore, the laser ion source was upgraded with a new Nd:YAG laser, the maximum energy of which is 8 J and the pulse duration can be adjusted from 8 to 18 ns. Since then, the charge state distributions of ions from various elements generated by the 8 J Nd:YAG laser were investigated for different experimental conditions, such as laser energy, pulse duration, power density in the focal spot, and incidence angle. It was shown that the incidence angle is one of the most important parameters for the production of highly charged ions. The capability of producing highly charged ions from the elements lighter than silver was demonstrated with the incidence angle of 10° and laser power density of 8 × 1013 W cm-2 in the focal spot, which makes a laser ion source complementary to the superconducting electron cyclotron resonance ion source for the future accelerator complex especially in terms of the ion beam production from some refractory elements. Nevertheless, great efforts with regard to the extraction of intense ion beams, modification of the ion beam pulse duration, and reliability of the ion source still need to be made for practical applications.

  19. New development of laser ion source for highly charged ion beam production at Institute of Modern Physics (invited)

    Energy Technology Data Exchange (ETDEWEB)

    Zhao, H. Y., E-mail: zhaohy@impcas.ac.cn; Zhang, J. J.; Jin, Q. Y.; Sun, L. T.; Zhang, X. Z.; Zhao, H. W. [Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou 730000 (China); Liu, W.; Wang, G. C. [Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou 730000 (China); University of Chinese Academy of Sciences, Beijing 100049 (China)

    2016-02-15

    A laser ion source based on Nd:YAG laser has been being studied at the Institute of Modern Physics for the production of high intensity high charge state heavy ion beams in the past ten years, for possible applications both in a future accelerator complex and in heavy ion cancer therapy facilities. Based on the previous results for the production of multiple-charged ions from a wide range of heavy elements with a 3 J/8 ns Nd:YAG laser [Zhao et al., Rev. Sci. Instrum. 85, 02B910 (2014)], higher laser energy and intensity in the focal spot are necessary for the production of highly charged ions from the elements heavier than aluminum. Therefore, the laser ion source was upgraded with a new Nd:YAG laser, the maximum energy of which is 8 J and the pulse duration can be adjusted from 8 to 18 ns. Since then, the charge state distributions of ions from various elements generated by the 8 J Nd:YAG laser were investigated for different experimental conditions, such as laser energy, pulse duration, power density in the focal spot, and incidence angle. It was shown that the incidence angle is one of the most important parameters for the production of highly charged ions. The capability of producing highly charged ions from the elements lighter than silver was demonstrated with the incidence angle of 10° and laser power density of 8 × 10{sup 13} W cm{sup −2} in the focal spot, which makes a laser ion source complementary to the superconducting electron cyclotron resonance ion source for the future accelerator complex especially in terms of the ion beam production from some refractory elements. Nevertheless, great efforts with regard to the extraction of intense ion beams, modification of the ion beam pulse duration, and reliability of the ion source still need to be made for practical applications.

  20. New development of laser ion source for highly charged ion beam production at Institute of Modern Physics (invited).

    Science.gov (United States)

    Zhao, H Y; Zhang, J J; Jin, Q Y; Liu, W; Wang, G C; Sun, L T; Zhang, X Z; Zhao, H W

    2016-02-01

    A laser ion source based on Nd:YAG laser has been being studied at the Institute of Modern Physics for the production of high intensity high charge state heavy ion beams in the past ten years, for possible applications both in a future accelerator complex and in heavy ion cancer therapy facilities. Based on the previous results for the production of multiple-charged ions from a wide range of heavy elements with a 3 J/8 ns Nd:YAG laser [Zhao et al., Rev. Sci. Instrum. 85, 02B910 (2014)], higher laser energy and intensity in the focal spot are necessary for the production of highly charged ions from the elements heavier than aluminum. Therefore, the laser ion source was upgraded with a new Nd:YAG laser, the maximum energy of which is 8 J and the pulse duration can be adjusted from 8 to 18 ns. Since then, the charge state distributions of ions from various elements generated by the 8 J Nd:YAG laser were investigated for different experimental conditions, such as laser energy, pulse duration, power density in the focal spot, and incidence angle. It was shown that the incidence angle is one of the most important parameters for the production of highly charged ions. The capability of producing highly charged ions from the elements lighter than silver was demonstrated with the incidence angle of 10° and laser power density of 8 × 10(13) W cm(-2) in the focal spot, which makes a laser ion source complementary to the superconducting electron cyclotron resonance ion source for the future accelerator complex especially in terms of the ion beam production from some refractory elements. Nevertheless, great efforts with regard to the extraction of intense ion beams, modification of the ion beam pulse duration, and reliability of the ion source still need to be made for practical applications.

  1. Charge Exchange Collisions between Ultracold Fermionic Lithium Atoms and Calcium Ions

    CERN Document Server

    Haze, Shinsuke; Saito, Ryoichi; Mukaiyama, Takashi

    2014-01-01

    An observation of charge exchange collisions between ultracold fermionic 6Li atoms and 40Ca+ ions is reported. The reaction product of the charge exchange collision is dentified via mass spectrometry where the motion of the ions is excited parametrically. We measure the cross section of the charge exchange collisions between the 6Li atoms in the ground state and the 40Ca+ ions in the ground and metastable excited states. Investigation of the inelastic collision characteristics in the atom-ion mixture is an important step toward ultracold chemistry based on ultracold atoms and ions.

  2. Intrinsic slow charge response in the perovskite solar cells: Electron and ion transport

    Energy Technology Data Exchange (ETDEWEB)

    Shi, Jiangjian; Xu, Xin; Zhang, Huiyin; Luo, Yanhong; Li, Dongmei; Meng, Qingbo, E-mail: qbmeng@iphy.ac.cn [Key Laboratory for Renewable Energy, Chinese Academy of Sciences, Beijing 100190 (China); Beijing Key Laboratory for New Energy Materials and Devices, Beijing 100190 (China); Institute of Physics, Chinese Academy of Sciences, Beijing 100190 (China)

    2015-10-19

    The intrinsic charge response and hysteresis characteristic in the perovskite solar cell has been investigated by an electrically modulated transient photocurrent technology. An ultraslow charge response process in the timescale of seconds is observed, which can be well explained by the ion migration in the perovskite CH{sub 3}NH{sub 3}PbI{sub 3} film driven by multiple electric fields derived from the heterojunction depletion charge, the external modulation, and the accumulated ion charge. Furthermore, theoretical calculation of charge transport reveals that the hysteresis behavior is also significantly influenced by the interfacial charge extraction velocity and the carrier transport properties inside the cell.

  3. Beamline for low-energy transport of highly charged ions at HITRAP

    Energy Technology Data Exchange (ETDEWEB)

    Andelkovic, Z., E-mail: z.andelkovic@gsi.de [GSI Helmholtzzentrum für Schwerionenforschung, Darmstadt (Germany); Herfurth, F.; Kotovskiy, N. [GSI Helmholtzzentrum für Schwerionenforschung, Darmstadt (Germany); König, K.; Maaß, B.; Murböck, T. [Technische Universität Darmstadt (Germany); Neidherr, D. [GSI Helmholtzzentrum für Schwerionenforschung, Darmstadt (Germany); Schmidt, S. [Technische Universität Darmstadt (Germany); Johannes Gutenberg-Universität Mainz (Germany); Steinmann, J. [GSI Helmholtzzentrum für Schwerionenforschung, Darmstadt (Germany); Hochschule Darmstadt (Germany); Vogel, M.; Vorobjev, G. [GSI Helmholtzzentrum für Schwerionenforschung, Darmstadt (Germany)

    2015-09-21

    A beamline for transport of highly charged ions with energies as low as a few keV/charge has been constructed and commissioned at GSI. Complementary to the existing infrastructure of the HITRAP facility for deceleration of highly charged ions from the GSI accelerator, the new beamline connects the HITRAP ion decelerator and an EBIT with the associated experimental setups. Therefore, the facility can now transport the decelerated heavy highly charged ions to the experiments or supply them offline with medium-heavy highly charged ions from the EBIT, both at energies as low as a few keV/charge. Here we present the design of the 20 m long beamline with the corresponding beam instrumentation, as well as its performance in terms of energy and transport efficiency.

  4. Improved charge breeding efficiency of light ions with an electron cyclotron resonance ion source

    Energy Technology Data Exchange (ETDEWEB)

    Vondrasek, R.; Kutsaev, Sergey [Argonne National Laboratory, Argonne, Illinois 60439 (United States); Delahaye, P.; Maunoury, L. [Grand Accelerateur National d' Ions Lourds (GANIL), CEA/DSM-CNRS/IN2P3, Blvd Henri Becquerel, 14076 Caen (France)

    2012-11-15

    The Californium Rare Isotope Breeder Upgrade is a new radioactive beam facility for the Argonne Tandem Linac Accelerator System (ATLAS). The facility utilizes a {sup 252}Cf fission source coupled with an electron cyclotron resonance ion source to provide radioactive beam species for the ATLAS experimental program. The californium fission fragment distribution provides nuclei in the mid-mass range which are difficult to extract from production targets using the isotope separation on line technique and are not well populated by low-energy fission of uranium. To date the charge breeding program has focused on optimizing these mid-mass beams, achieving high charge breeding efficiencies of both gaseous and solid species including 14.7% for the radioactive species {sup 143}Ba{sup 27+}. In an effort to better understand the charge breeding mechanism, we have recently focused on the low-mass species sodium and potassium which up to present have been difficult to charge breed efficiently. Unprecedented charge breeding efficiencies of 10.1% for {sup 23}Na{sup 7+} and 17.9% for {sup 39}K{sup 10+} were obtained injecting stable Na{sup +} and K{sup +} beams from a surface ionization source.

  5. Dengue virus M protein C-terminal peptide (DVM-C) forms ion channels.

    Science.gov (United States)

    Premkumar, A; Horan, C R; Gage, P W

    2005-03-01

    A chemically synthesized peptide consisting of the C-terminus of the M protein of the Dengue virus type 1 strain Singapore S275/90 (DVM-C) produced ion channel activity in artificial lipid bilayers. The channels had a variable conductance and were more permeable to sodium and potassium ions than to chloride ions and more permeable to chloride ions than to calcium ions. Hexamethylene amiloride (100 microM) and amantadine (10 microM), blocked channels formed by DVM-C. Ion channels may play an important role in the life cycle of many viruses and drugs that block these channels may prove to be useful antiviral agents.

  6. Formation and fragmentation of quadruply charged molecular ions by intense femtosecond laser pulses.

    Science.gov (United States)

    Yatsuhashi, Tomoyuki; Nakashima, Nobuaki

    2010-07-22

    We investigated the formation and fragmentation of multiply charged molecular ions of several aromatic molecules by intense nonresonant femtosecond laser pulses of 1.4 mum with a 130 fs pulse duration (up to 2 x 10(14) W cm(-2)). Quadruply charged states were produced for 2,3-benzofluorene and triphenylene molecular ion in large abundance, whereas naphthalene and 1,1'-binaphthyl resulted only in up to triply charged molecular ions. The laser wavelength was nonresonant with regard to the electronic transitions of the neutral molecules, and the degree of fragmentation was strongly correlated with the absorption of the singly charged cation radical. Little fragmentation was observed for naphthalene (off-resonant with cation), whereas heavy fragmentation was observed in the case of 1,1'-binaphthyl (resonant with cation). The degree of H(2) (2H) and 2H(2) (4H) elimination from molecular ions increased as the charge states increased in all the molecules examined. A striking difference was found between triply and quadruply charged 2,3-benzofluorene: significant suppression of molecular ions with loss of odd number of hydrogen was observed in the quadruply charged ions. The Coulomb explosion of protons in the quadruply charged state and succeeding fragmentation resulted in the formation of triply charged molecular ions with an odd number of hydrogens. The hydrogen elimination mechanism in the highly charged state is discussed.

  7. Spontaneous Mass and Charge Losses from Single Multi-Megadalton Ions Studied by Charge Detection Mass Spectrometry

    Science.gov (United States)

    Keifer, David Z.; Alexander, Andrew W.; Jarrold, Martin F.

    2017-01-01

    Spontaneous mass and charge losses from individual multi-megadalton ions have been observed with charge detection mass spectrometry (CDMS) by trapping single hepatitis B virus (HBV) capsids for 3 s. Gradual increases in the oscillation frequency of single ions in the ion trap are attributed mainly to mass loss (probably solvent, water, and/or salt). The total mass lost during the 3 s trapping period peaks at around 20 kDa for 4 MDa HBV T = 4 capsids. Discrete frequency drops punctuate the gradual increases in the oscillation frequencies. The drops are attributed to a sudden loss of charge. In most cases a single positive charge is lost along with some mass (on average around 1000 Da). Charge loss occurs for over 40% of the trapped ions. It usually occurs near the beginning of the trapping event, and it occurs preferentially in regions of the trap with strong electric fields, indicating that external electric fields promote charge loss. This process may contribute to the decrease in m/z resolution that often occurs with megadalton ions.

  8. Charge-transfer energy in closed-shell ion-atom interactions. [for H and Li ions in He

    Science.gov (United States)

    Alvarez-Rizzatti, M.; Mason, E. A.

    1975-01-01

    The importance of charge-transfer energy in the interactions between closed-shell ions and atoms is investigated. Ab initio calculations on H(plus)-He and Li(plus)-He are used as a guide for the construction of approximate methods for the estimation of the charge-transfer energy for more complicated systems. For many alkali ion-rate gas systems the charge-transfer energy is comparable to the induction energy in the region of the potential minimum, although for doubly charged alkaline-earth ions in rare gases the induction energy always dominates. Surprisingly, an empirical combination of repulsion energy plus asymptotic induction energy plus asymptotic dispersion energy seems to give a fair representation of the total interaction, especially if the repulsion energy is parameterized, despite the omission of any explicit charge-transfer contribution. More refined interaction models should consider the charge-transfer energy contribution.

  9. Quantitative evaluation of charge-reduction effect in cluster constituent ions passing through a foil

    Energy Technology Data Exchange (ETDEWEB)

    Chiba, A., E-mail: chiba.atsuya@jaea.go.jp [Takasaki Advanced Radiation Research Institute, Japan Atomic Energy Agency (JAEA), 1233 Watanuki-machi, Takasaki-shi, Gunma 370-1292 (Japan); Saitoh, Y.; Narumi, K.; Yamada, K. [Takasaki Advanced Radiation Research Institute, Japan Atomic Energy Agency (JAEA), 1233 Watanuki-machi, Takasaki-shi, Gunma 370-1292 (Japan); Kaneko, T. [Department of Applied Physics, Okayama University of Science, 1-1 Ridai-cho, kita-ku, Okayama-shi, Okayama 700-0005 (Japan)

    2013-11-15

    Swift cluster ions, which cause characteristic irradiation effects on a solid surface, have a possibility of establishing a new ion irradiation technique for high-sensitivity surface analysis and innovative surface modification. However, the mechanism of cluster irradiation effects has not been understood completely. We have focused on the charge reduction effect in some physical phenomena and performed a quantitative evaluation of the relationship between the charge state and the interatomic distance of the constituent ions moving in the solid. This technique is based on the refined analysis of the divergence angle of the constituent ions resulting from the foil-induced dissociation of the two-atomic molecular ion. The results derived from this analytical approach clearly showed the correlation between the average charge and the interatomic distance of the constituent ions and implied that the average charge of the constituent ions emerging from the foil varies according to the interatomic distance at the instant of cluster dissociation.

  10. Gas-phase structure of amyloid-β (12-28) peptide investigated by infrared spectroscopy, electron capture dissociation and ion mobility mass spectrometry.

    Science.gov (United States)

    Le, Thi Nga; Poully, Jean Christophe; Lecomte, Frédéric; Nieuwjaer, Nicolas; Manil, Bruno; Desfrançois, Charles; Chirot, Fabien; Lemoine, Jerome; Dugourd, Philippe; van der Rest, Guillaume; Grégoire, Gilles

    2013-12-01

    The gas-phase structures of doubly and triply protonated Amyloid-β12-28 peptides have been investigated through the combination of ion mobility (IM), electron capture dissociation (ECD) mass spectrometry, and infrared multi-photon dissociation (IRMPD) spectroscopy together with theoretical modeling. Replica-exchange molecular dynamics simulations were conducted to explore the conformational space of these protonated peptides, from which several classes of structures were found. Among the low-lying conformers, those with predicted diffusion cross-sections consistent with the ion mobility experiment were further selected and their IR spectra simulated using a hybrid quantum mechanical/semiempirical method at the ONIOM DFT/B3LYP/6-31 g(d)/AM1 level. In ECD mass spectrometry, the c/z product ion abundance (PIA) has been analyzed for the two charge states and revealed drastic differences. For the doubly protonated species, N - Cα bond cleavage occurs only on the N and C terminal parts, while a periodic distribution of PIA is clearly observed for the triply charged peptides. These PIA distributions have been rationalized by comparison with the inverse of the distances from the protonated sites to the carbonyl oxygens for the conformations suggested from IR and IM experiments. Structural assignment for the amyloid peptide is then made possible by the combination of these three experimental techniques that provide complementary information on the possible secondary structure adopted by peptides. Although globular conformations are favored for the doubly protonated peptide, incrementing the charge state leads to a conformational transition towards extended structures with 310- and α-helix motifs.

  11. A new copper containing MALDI matrix that yields high abundances of [peptide + Cu]+ ions.

    Science.gov (United States)

    Wu, Zhaoxiang; Fernandez-Lima, Francisco A; Perez, Lisa M; Russell, David H

    2009-07-01

    The dinuclear copper complex (alpha-cyano-4-hydroxycinnamic acid (CHCA) copper salt (CHCA)(4)Cu(2)), synthesized by reacting CHCA with copper oxide (CuO), yields increased abundances of [M + xCu - (x-1)H](+) (x = 1-6) ions when used as a matrix for matrix-assisted laser desorption ionization (355 nm Nd:YAG laser). The yield of [M + xCu - (x-1)H](+) (x = 1 to approximately 6) ion is much greater than that obtained by mixing peptides with copper salts or directly depositing peptides onto oxidized copper surfaces. The increased ion yields for [M + xCu - (x-1)H](+) facilitate studies of biologically important copper binding peptides. For example, using this matrix we have investigated site-specific copper binding of several peptides using fragmentation chemistry of [M + Cu](+) and [M + 2Cu - H](+) ions. The fragmentation studies reveal interesting insight on Cu binding preferences for basic amino acids. Most notable is the fact that the binding of a single Cu(+) ion and two Cu(+) ions are quite different, and these differences are explained in terms of intramolecular interactions of the peptide-Cu ionic complex.

  12. Highly charged ions as a basis of optical atomic clockwork of exceptional accuracy.

    Science.gov (United States)

    Derevianko, Andrei; Dzuba, V A; Flambaum, V V

    2012-11-02

    We propose a novel class of atomic clocks based on highly charged ions. We consider highly forbidden laser-accessible transitions within the 4f(12) ground-state configurations of highly charged ions. Our evaluation of systematic effects demonstrates that these transitions may be used for building exceptionally accurate atomic clocks which may compete in accuracy with recently proposed nuclear clocks.

  13. Relativistic, QED and nuclear effects in highly charged ions revealed by resonant electron-ion recombination in storage rings

    OpenAIRE

    Schippers, Stefan

    2008-01-01

    Dielectronic recombination (DR) of few-electron ions has evolved into a sensitive spectroscopic tool for highly charged ions. This is due to technological advances in electron-beam preparation and ion-beam cooling techniques at heavy-ion storage rings. Recent experiments prove unambiguously that DR collision spectroscopy has become sensitive to 2nd order QED and to nuclear effects. This review discusses the most recent developments in high-resolution spectroscopy of low-energy DR resonances, ...

  14. Study on the Optimal Charging Strategy for Lithium-Ion Batteries Used in Electric Vehicles

    Directory of Open Access Journals (Sweden)

    Shuo Zhang

    2014-10-01

    Full Text Available The charging method of lithium-ion batteries used in electric vehicles (EVs significantly affects its commercial application. This paper aims to make three contributions to the existing literature. (1 In order to achieve an efficient charging strategy for lithium-ion batteries with shorter charging time and lower charring loss, the trade-off problem between charging loss and charging time has been analyzed in details through the dynamic programing (DP optimization algorithm; (2 To reduce the computation time consumed during the optimization process, we have proposed a database based optimization approach. After off-line calculation, the simulation results can be applied to on-line charge; (3 The novel database-based DP method is proposed and the simulation results illustrate that this method can effectively find the suboptimal charging strategies under a certain balance between the charging loss and charging time.

  15. Tuning Charge Transfer in Ion-Surface Collisions at Hyperthermal Energies.

    Science.gov (United States)

    Yao, Yunxi; Giapis, Konstantinos P

    2016-05-18

    Charge exchange in ion-surface collisions may be influenced by surface adsorbates to alter the charge state of the scattered projectiles. We show here that the positive-ion yield, observed during ion scattering on metal surfaces at low incident energies, is greatly enhanced by adsorbing electronegative species onto the surface. Specifically, when beams of N(+) and O(+) ions are scattered off of clean Au surfaces at hyperthermal energies, no positive ions are observed exiting. Partial adsorption of F atoms on the Au surface, however, leads to the appearance of positively charged primary ions scattering off of Au, a direct result of the increase in the Au work function. The inelastic energy losses for positive-ion exits are slightly larger than the corresponding ionization energies of the respective N and O atoms, which suggest that the detected positive ions are formed by surface reionization during the hard collision event.

  16. QED corrections to atomic wavefunctions in highly charged ions

    Energy Technology Data Exchange (ETDEWEB)

    Holmberg, Johan

    2015-11-18

    Bound electron states in highly charged ions are strongly influenced by the effects of relativity and quantum electrodynamics (QED). These effects induce shifts of the binding energies as well as corrections to observables related to atomic processes. In this work a numerical procedure is described and implemented in which the QED effects are treated as corrections to relativistic bound-state wavefunctions. This approach, which is based on the recently developed covariant evolution-operator formalism, allows for a merging of QED with the standard methods of many-body perturbation theory. In particular, it enables an evaluation of the combined effect of QED and electron correlation in few-electron systems. Numerical results for this effect are presented for the ground state energy of helium-like ions. A detailed analysis of the contribution from the electron self-energy is carried out in both the Feynman and Coulomb gauge. It is found that the Feynman gauge suffers from large numerical cancellations and acquires significant contributions from terms involving multiple interactions with the nuclear potential (the so-called many-potential terms), while the Coulomb gauge is well suited for an approximate treatment based on terms involving only freely propagating electrons (the zero-potential terms). With the help of QED-corrected wavefunctions it is also possible to compute corrections to observables in basic atomic processes. In this work some of the one-loop QED corrections (those derivable from perturbed wavefunctions and energies) to the differential cross section and distribution of polarization in radiative recombination of initially bare uranium nuclei are evaluated, as well as the corresponding corrections to the ratio τ{sub E1}/τ{sub M2} of the electric dipole and magnetic quadrupole transition amplitudes in the 2p{sub 3/2}→1s radiative decay of hydrogenlike uranium. The results from these calculations are all of the expected magnitude, namely on the order

  17. Modifications of gallium phosphide single crystals using slow highly charged ions and swift heavy ions

    Science.gov (United States)

    El-Said, A. S.; Wilhelm, R. A.; Heller, R.; Akhmadaliev, Sh.; Schumann, E.; Sorokin, M.; Facsko, S.; Trautmann, C.

    2016-09-01

    GaP single crystals were irradiated with slow highly charged ions (HCI) using 114 keV 129Xe(33-40)+ and with various swift heavy ions (SHI) of 30 MeV I9+ and 374 MeV-2.2 GeV 197Au25+. The irradiated surfaces were investigated by scanning force microscopy (SFM). The irradiations with SHI lead to nanohillocks protruding from the GaP surfaces, whereas no changes of the surface topography were observed after the irradiation with HCI. This result indicates that a potential energy above 38.5 keV is required for surface nanostructuring of GaP. In addition, strong coloration of the GaP crystals was observed after irradiation with SHI. The effect was stronger for higher energies. This was confirmed by measuring an increased extinction coefficient in the visible light region.

  18. Lithium-Ion Battery Failure: Effects of State of Charge and Packing Configuration

    Science.gov (United States)

    2016-08-22

    Naval Research Laboratory Washington, DC 20375-5320 NRL/MR/6180--16-9689 Lithium-Ion Battery Failure: Effects of State of Charge and Packing ...PAGES 17. LIMITATION OF ABSTRACT Lithium-Ion Battery Failure: Effects of State of Charge and Packing Configuration Neil S. Spinner,* Katherine M. Hinnant...geometries, abuse scenarios, and analysis techniques. In this report, different states of charge and packing configurations of a commercially available

  19. Charge Breeding Techniques in an Electron Beam Ion Trap for High Precision Mass Spectrometry at TITAN

    Science.gov (United States)

    MacDonald, T. D.; Simon, M. C.; Bale, J. C.; Chowdhury, U.; Eibach, M.; Gallant, A. T.; Lennarz, A.; Simon, V. V.; Chaudhuri, A.; Grossheim, A.; Kwiatkowski, A. A.; Schultz, B. E.; Dilling, J.

    2012-10-01

    Penning trap mass spectrometry is the most accurate and precise method available for performing atomic mass measurements. TRIUMF's Ion Trap for Atomic and Nuclear science is currently the only facility to couple its Penning trap to a rare isotope facility and an electron beam ion trap (EBIT). The EBIT is a valuable tool for beam preparation: since the precision scales linearly with the charge state, it takes advantage of the precision gained by using highly charged ions. However, this precision gain is contingent on fast and efficient charge breeding. An optimization algorithm has been developed to identify the optimal conditions for running the EBIT. Taking only the mass number and half-life of the isotope of interest as inputs, the electron beam current density, charge breeding time, charge state, and electron beam energy are all specified to maximize this precision. An overview of the TITAN charge breeding program, and the results of charge breeding simulations will be presented.

  20. Experimental characterization of the Hitrap Cooler trap with highly charged ions.

    OpenAIRE

    Fedotova, Svetlana

    2013-01-01

    The HITRAP (Highly charged Ions TRAP)facility is being set up and commissioned at GSI, Darmstadt. It will provide heavy, highly charged ions at low velocities to high-precision atomic physics experiments. Within this work the Cooler trap- the key element of the HITRAP facility was tested. The Cooler trap was assembled, aligned, and commissioned in trapping experiments with ions from off-line sources.The work performed within the scope of this thesis provided the baseline for further operation...

  1. Modeling of ion-pairing effect in peptide reversed-phase chromatography.

    Science.gov (United States)

    Gétaz, David; Hariharan, Subrahmaniam B; Butté, Alessandro; Morbidelli, Massimo

    2012-08-03

    The modeling of counterion and organic modifier concentration effects in peptide APIs reversed-phase preparative chromatography is discussed in this manuscript. A stoichiometric retention model based on the counterion binding to the charged functional groups of the peptide is proposed. The model parameters were evaluated using a rather large set of retention data measured in mobile phases with various counterions and acetonitrile concentrations. The model parameters were experimentally validated by a new counterion binding measurement technique. The n(max) model parameter value was found to be equal to the peptide net charge, whereas the K model parameter value was found to be specific to the counterion type (i.e. AcO(-)peptide saturation capacity was also investigated. It was shown that, at low acetonitrile concentration, the peptide saturation capacity was constant for all investigated counterion types and concentrations. On the other hand, at intermediate acetonitrile concentration, the peptide saturation capacity was significantly lower and with a tendency to increase with the counterion concentration. On the whole, the developed model provides a reliable a reliable tool for the design and development of peptide purification processes at the preparative and industrial scale.

  2. Space-charge-dominated mass spectrometry ion sources: Modeling and sensitivity.

    Science.gov (United States)

    Busman, M; Sunner, J; Vogel, C R

    1991-01-01

    The factors determining the sensitivity of space-charge-dominated (SCD) unipolar ion sources, such as electrospray (ESP) and corona atmospheric pressure ionization (API) have been studied theoretically. The most important parameters are the ion density and ion drift time in the vicinity of the sampling orifice. These are obtained by solving a system of differential equations, "the space-charge problem." For some simple geometries, analytical solutions are known. For a more realistic "needle-in-can" geometry, a solution to the space-charge problem was obtained using a finite-element method. The results illustrate some general characteristics of SCD ion sources. It is shown that for typical operating conditions the minimum voltage required to overcome the space-charge effect in corona API or ESP ion sources constitutes a dominant or significant fraction of total applied voltage. Further, the electric field and the ion density in the region of the ion-sampling orifice as well as the ion residence time in the source are determined mainly by the space charge. Finally, absolute sensitivities of corona API ion sources were calculated by using a geometry-independent treatment of space charge.

  3. Ionic Charge State Distribution of Au Plasma for 7-Ion System

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    The present work extends the previous work[2] on 5-ion system to consider 7-ion system (i.e., Au47+ ~ Au53+). It is found that more highly charged ions, e.g., Au53+, Au54+ etc., could be able to be neglected, however, less highly charged ions, e.g., Au47+, Au46+ etc., are rather important. Therefore, a new idea to consider 8-ion system, i.e., Au46+ ~ Au53+, is under way. As a supplement, we discuss the simultaneous reaction, which would be important in this sort of works.

  4. Matrix-assisted laser desorption ion trap mass spectrometry: efficient isolation and effective fragmentation of peptide ions.

    Science.gov (United States)

    Qin, J; Chait, B T

    1996-07-01

    Effective analysis of the sequence of peptides using matrix-assisted laser desorption/ionization (MALDI) tandem ion trap mass spectrometry requires efficient mass isolation and the ability to induce extensive sequence-specific fragmentation. The present paper describes a new excitation scheme, which we term red-shifted off-resonance large-amplitude excitation (RSORLAE), that can deposit higher amounts of internal energy in ions than is feasible with conventional resonant excitation. The new method provides an effective means for inducing fragmentation of MALDI-produced peptide ions with m/z values up to 3500. Prior to excitation, it is necessary to isolate ions of interest with high efficiency. We demonstrate that isolation efficiencies of > 95% can be achieved by careful design of the rf scan functions used during ion isolation. In particular, sudden transitions in the amplitude of the rf field (from low to high amplitudes) must be avoided. The combined improvements in the efficiency for ion isolation and the efficacy of ion activation make MALDI tandem ion trap mass spectrometry a practical tool for the characterization of proteins with high sensitivity.

  5. Techniques and mechanisms applied in electron cyclotron resonance sources for highly charged ions

    NARCIS (Netherlands)

    Drentje, AG

    2003-01-01

    Electron cyclotron resonance ion sources are delivering beams of highly charged ions for a wide range of applications in many laboratories. For more than two decades, the development of these ion sources has been to a large extent an intuitive and experimental enterprise. Much effort has been spent

  6. Recent Excitation, Charge Exchange, and Lifetime Results in Highly Charged Ions Relevant to Stellar, Interstellar, Solar and Comet Phenomena

    Science.gov (United States)

    Chutjian, A.; Hossain, S.; Mawhorter, R. J.; Smith, S. J.

    2006-01-01

    Recent JPL absolute excitation and charge exchange cross sections, and measurements of lifetimes of metastable levels in highly-charged ions (HCIs) are reported. These data provide benchmark comparisons to results of theoretical calculations. Theoretical approaches can then be used to calculate the vast array of data which cannot be measured due to experimental constraints. Applications to the X-ray emission from comets are given.

  7. Metal ions as cofactors for aggregation of therapeutic peptide salmon calcitonin.

    Science.gov (United States)

    Rastogi, Neeraj; Mitra, Kalyan; Kumar, Dinesh; Roy, Raja

    2012-05-21

    The effects of multivalent metal ions (Cu(2+)/Zn(2+)/Al(3+)) on the aggregation of salmon calcitonin (sCT)--a therapeutic peptide used worldwide in the treatment of osteoporosis and Paget's disease--have been studied in vitro using NMR (both solution state and solid state), TEM, ThT-fluorescence, and FT-IR spectroscopy. Overall, the various results indicated that the metal-ions-induced conformational transitions in the peptide--mostly toward the β-sheet--facilitate the aggregation of sCT in solution. First, the solution NMR has been used to check the interaction between the peptide and the metal ions. Following this, the formation and characterization of calcitonin aggregates has been performed using TEM, solid state NMR, and FT-IR spectroscopy. The TEM and ThT-fluorescence results revealed that the sCT peptide incubated with Cu(2+) and Zn(2+) metal ions (in aqueous environment) forms globular aggregates, while that with Al(3+) ions forms fibrils. The solid state NMR and FT-IR studies revealed the presence of a substantial amount of β-sheet content in sCT aggregates (formed in the presence of these metal ions) compared to the monomeric sCT, indicating that the metal binding is concomitant with conformational changes. The present study becomes crucial while prescribing this drug peptide under physio-pathological conditions associated with an abnormal accumulation of metal ions (Cu(2+)/Zn(2+)/Al(3+)) in the body (i.e., abnormal metal ion homeostasis).

  8. Modulation and interactions of charged biomimetic membranes with bivalent ions

    Science.gov (United States)

    Kazadi Badiambile, Adolphe

    biomolecules in a dynamic environment and the lack of appropriate physical and biochemical tools. In contrast, biomimetic membrane models that rely on the amphiphilic properties of phospholipids are powerful tools that enable the study of these molecules in vitro. By having control over the different experimental parameters such as temperature and pH, reliable and repeatable experimental conditions can be created. One of the key questions I investigated in this thesis is related to the clustering mechanism of PtdIns(4, 5)P2 into pools or aggregates that enable independent cellular control of this species by geometric separation. The lateral aggregation of PtdIns(4, 5)P2 and its underlying physical causes is still a matter of debate. In the first part of this thesis I introduce the general information on lipid membranes with a special focus on the PtdIns family and their associated signaling events. In addition, I explain the Langmuir-Blodgett film balance (LB) system as tool to study lipid membranes and lipid interactions. In the second chapter, I describe my work on the lateral compressibility of PtdIns(4, 5)P2, PtdIns and DOPG monolayers and its modulation by bivalent ions using Langmuir monolayers. In addition, a theoretical framework of compressibility that depends on a surface potential induced by a planar layer of charged molecules and ions in the bulk was provided. In the third part, I present my work on the excess Gibbs free energy of the lipid systems PtdIns(4, 5)P2 --POPC, PtdIns(4, 5)P2, and POPC as they are modulated by bivalent ions. In the fourth part, I report on my foray in engineering a light-based system that relies on different dye properties to simulate calcium induced calcium release (CICR) that occurs in many cell types. In the final chapter, I provide a general conclusion and present directions for future research that would build on my findings.

  9. Transport, charge exchange and loss of energetic heavy ions in the earth's radiation belts - Applicability and limitations of theory

    Science.gov (United States)

    Spjeldvik, W. N.

    1981-01-01

    Computer simulations of processes which control the relative abundances of ions in the trapping regions of geospace are compared with observations from discriminating ion detectors. Energy losses due to Coulomb collisions between ions and exospheric neutrals are considered, along with charge exchange losses and internal charge exchanges. The time evolution of energetic ion fluxes of equatorially mirroring ions under radial diffusion is modelled to include geomagnetic and geoelectric fluctutations. Limits to the validity of diffusion transport theory are discussed, and the simulation is noted to contain provisions for six ionic charge states and the source effect on the radiation belt oxygen ion distributions. Comparisons are made with ion flux data gathered on Explorer 45 and ISEE-1 spacecraft and results indicate that internal charge exchanges cause the radiation belt ion charge state to be independent of source charge rate characteristics, and relative charge state distribution is independent of the radially diffusive transport rate below the charge state redistribution zone.

  10. Optimization of electron-cyclotron-resonance charge-breeder ions : Final CRADA Report.

    Energy Technology Data Exchange (ETDEWEB)

    Pardo, R.; Physics; Far-Tech, Inc.

    2009-10-09

    Measurements of 1+ beam properties and associated performance of ECR Charge Breeder source determined by total efficiency measurement and charge state distributions from the ECR Charge Breeder. These results were communicated to Far-Tech personnel who used them to benchmark the newly developed programs that model ion capture and charge breeding in the ECR Charge Breeder Source. Providing the basic data described above and in the discussion below to Far-Tech allowed them to improve and refine their calculational tools for ECR ion sources. These new tools will be offered for sale to industry and will also provide important guidance to other research labs developing Charge Breeding ion sources for radioactive beam physics research.

  11. Highly charged ions trapping for lifetime measurements; Piegeage d'ions tres charges pour la mesure de duree de vie d'etats metastables

    Energy Technology Data Exchange (ETDEWEB)

    Attia, D

    2007-10-15

    A new experimental setup dedicated to highly charged ion trapping is presented in this work. The final goal is to perform lifetime measurement of metastable states produced by our ECR (Electron Cyclotron Resonance) ion source. Lifetimes to be measured are in the range of a few ms and more. We have measured the lifetimes of the M1 transitions of the metastable states of Ar{sup 9+}, Ar{sup 13+} and Ar{sup 14+}. These measurements are useful to test the N-body problem in the relativistic range. The trap we have built, was designed a few years ago at the Weizman Institute in Israel, it allows ions with an energy of several keV to be trapped for lifetimes of about 1 second. This trap was originally designed to study the dynamics of excited molecules. We have shown for the first time how the trap operates and that it can operate with highly charged ions. We have studied the beam dynamics of highly charged ions and the trap has been tested with various species of ions and different charge states: from O{sup +} to O{sup 6+}, from Ar{sup 8+} to Ar{sup 13+}, and from Kr{sup 13+} to Kr{sup 20+}.

  12. Ion mobility mass spectrometry of peptide, protein, and protein complex ions using a radio-frequency confining drift cell.

    Science.gov (United States)

    Allen, Samuel J; Giles, Kevin; Gilbert, Tony; Bush, Matthew F

    2016-02-01

    Ion mobility mass spectrometry experiments enable the characterization of mass, assembly, and shape of biological molecules and assemblies. Here, a new radio-frequency confining drift cell is characterized and used to measure the mobilities of peptide, protein, and protein complex ions. The new drift cell replaced the traveling-wave ion mobility cell in a Waters Synapt G2 HDMS. Methods for operating the drift cell and determining collision cross section values using this experimental set up are presented within the context of the original instrument control software. Collision cross sections for 349 cations and anions are reported, 155 of which are for ions that have not been characterized previously using ion mobility. The values for the remaining ions are similar to those determined using a previous radio-frequency confining drift cell and drift tubes without radial confinement. Using this device under 2 Torr of helium gas and an optimized drift voltage, denatured and native-like ions exhibited average apparent resolving powers of 14.2 and 16.5, respectively. For ions with high mobility, which are also low in mass, the apparent resolving power is limited by contributions from ion gating. In contrast, the arrival-time distributions of low-mobility, native-like ions are not well explained using only contributions from ion gating and diffusion. For those species, the widths of arrival-time distributions are most consistent with the presence of multiple structures in the gas phase.

  13. Measurements of Ion Selective Containment on the RF Charge Breeder Device BRIC

    CERN Document Server

    Variale, Vincenzo; Batazova, Marina; Boggia, Antonio; Clauser, Tarcisio; Kuznetsov, Gennady I; Rainò, Antonio; Shiyankov, Sergey; Skarbo, Boris A; Valentino, Vincenzo; Verrone, Grazia

    2005-01-01

    The "charge state breeder" BRIC (BReeding Ion Charge) is based on an EBIS source and it is designed to accept Radioactive Ion Beam (RIB) with charge +1, in a slow injection mode, to increase their charge state up to +n. BRIC has been developed at the INFN section of Bari (Italy) during these last 3 years with very limited funds. Now, it has been assembled at the LNL (Italy) where are in progress the first tests as stand alone source. The new feature of BRIC, with respect to the classical EBIS, is given by the insertion, in the ion drift chamber, of a Radio Frequency (RF) Quadrupole aiming to filtering the unwanted elements and then making a more efficient containment of the wanted ions. In this contribution, the measurements of the selective effect on the ion charge state containement of the RF quadrupole field, applied on the ion chamber, will be reported and discussed. The ion charge state analisys of the ions trapped in BRIC seem confirm, as foreseen by simulation results carried out previously, that the s...

  14. Highly charged ion research at the Livermore electron beam ion traps

    Energy Technology Data Exchange (ETDEWEB)

    Beiersdorfer, P

    2004-01-04

    Spectroscopy performed with the three Livermore electron beam ion traps is reviewed, which is continuing and complementing the innumerable contributions to atomic physics provided over the years by heavy-ion accelerators. Numerous spectrometers were developed that cover the spectral bands from the visible to the hard x ray region. These enabled exhaustive line surveys useful for x-ray astrophysics and for systematic studies along iso-electronic sequences, such as the 4s-4p, 3s-3p, and 2s-2p transitions in ions of the Cu-I, Na-I, and Li-I sequences useful for studying QED and correlation effects as well as for precise determinations of atomic-nuclear interactions. They also enabled measurements of radiative transition probabilities of very long-lived (milli- and microseconds) and very short-live (femtosecond) levels. Because line excitation processes can be controlled by choice of the electron beam energy, the observed line intensities are used to infer cross sections for electron-impact excitation, dielectronic recombination, resonance excitation, and innershell ionization. These capabilities have recently been expanded to simulate x-ray emission from comets by charge exchange. Specific contributions to basic atomic physics, nuclear physics, and high-temperature diagnostics are illustrated.

  15. De novo design of peptide scaffolds as novel preorganized ligands for metal-ion coordination.

    Science.gov (United States)

    Gamble, Aimee J; Peacock, Anna F A

    2014-01-01

    This chapter describes how de novo designed peptides can be used as novel preorganized ligands for metal ion coordination. The focus is on the design of peptides which are programmed to spontaneously self-assemble into α-helical coiled coils in aqueous solution, and how metal ion binding sites can be engineered onto and into these structures. In addition to describing the various design principles, some key examples are covered illustrating the success of this approach, including a more detailed example in the case study.

  16. Ion-ion reactions for charge reduction of biopolymer at atmospheric pressure ambient

    Institute of Scientific and Technical Information of China (English)

    Yue Ming Zhou; Jian Hua Ding; Xie Zhang; Huan Wen Chen

    2007-01-01

    Extractive electrospray ionization source (EESI) was adapted for ion-ion reaction, which was demonstrated by using a linear quadrupole ion trap mass spectrometer for the first ion-ion reaction of biopolymers in the atmospheric pressure ambient.

  17. Intense beam production of highly charged heavy ions by the superconducting electron cyclotron resonance ion source SECRAL.

    Science.gov (United States)

    Zhao, H W; Sun, L T; Zhang, X Z; Guo, X H; Cao, Y; Lu, W; Zhang, Z M; Yuan, P; Song, M T; Zhao, H Y; Jin, T; Shang, Y; Zhan, W L; Wei, B W; Xie, D Z

    2008-02-01

    There has been increasing demand to provide higher beam intensity and high enough beam energy for heavy ion accelerator and some other applications, which has driven electron cyclotron resonance (ECR) ion source to produce higher charge state ions with higher beam intensity. One of development trends for highly charged ECR ion source is to build new generation ECR sources by utilization of superconducting magnet technology. SECRAL (superconducting ECR ion source with advanced design in Lanzhou) was successfully built to produce intense beams of highly charged ion for Heavy Ion Research Facility in Lanzhou (HIRFL). The ion source has been optimized to be operated at 28 GHz for its maximum performance. The superconducting magnet confinement configuration of the ion source consists of three axial solenoid coils and six sextupole coils with a cold iron structure as field booster and clamping. An innovative design of SECRAL is that the three axial solenoid coils are located inside of the sextupole bore in order to reduce the interaction forces between the sextupole coils and the solenoid coils. For 28 GHz operation, the magnet assembly can produce peak mirror fields on axis of 3.6 T at injection, 2.2 T at extraction, and a radial sextupole field of 2.0 T at plasma chamber wall. During the commissioning phase at 18 GHz with a stainless steel chamber, tests with various gases and some metals have been conducted with microwave power less than 3.5 kW by two 18 GHz rf generators. It demonstrates the performance is very promising. Some record ion beam intensities have been produced, for instance, 810 e microA of O(7+), 505 e microA of Xe(20+), 306 e microA of Xe(27+), and so on. The effect of the magnetic field configuration on the ion source performance has been studied experimentally. SECRAL has been put into operation to provide highly charged ion beams for HIRFL facility since May 2007.

  18. Space Charge Compensation in the Linac4 Low Energy Beam Transport Line with Negative Hydrogen Ions

    CERN Document Server

    Valerio-Lizarraga, C; Leon-Monzon, I; Lettry, J; Midttun, O; Scrivens, R

    2014-01-01

    The space charge effect of low energy, unbunched ion beams can be compensated by the trapping of ions or electrons into the beam potential. This has been studied for the 45 keV negative hydrogen ion beam in the CERN Linac4 Low Energy Beam Tranport (LEBT) using the package IBSimu1, which allows the space charge calculation of the particle trajectories. The results of the beam simulations will be compared to emittance measurements of an H- beam at the CERN Linac4 3 MeV test stand, where the injection of hydrogen gas directly into the beam transport region has been used to modify the space charge compensation degree.

  19. Testing spatial α-variation with optical atomic clocks based on highly charged ions

    Directory of Open Access Journals (Sweden)

    Berengut J. C.

    2013-08-01

    Full Text Available We review recent works illustrating the potential use of highly charged ions as the basis of optical atomic clocks of exceptional accuracy and very high sensitivity to variation of the fine structure constant, α. The tendency towards large transition energies in highly charged ions can be overcome using level crossings, which allow transitions between different orbitals to be within the range of usual lasers. We present simple scaling laws that demonstrate reduced systematics that could be realised in highly charged ion clocks. Such clocks could allow us to corroborate astronomical studies that suggest a spatial gradient in values of α across the Universe.

  20. Performance on the low charge state laser ion source in BNL

    Energy Technology Data Exchange (ETDEWEB)

    Okamura, M.; Alessi, J.; Beebe, E.; Costanzo, M.; DeSanto, L.; Jamilkowski, J.; Kanesue, T.; Lambiase, R.; Lehn, D.; Liaw, C. J.; McCafferty, D.; Morris, J.; Olsen, R.; Pikin, A.; Raparia, D.; Steszyn, A.; Ikeda, S.

    2015-09-07

    On March 2014, a Laser Ion Source (LIS) was commissioned which delivers high-brightness, low-charge-state heavy ions for the hadron accelerator complex in Brookhaven National Laboratory (BNL). Since then, the LIS has provided many heavy ion species successfully. The low-charge-state (mostly singly charged) beams are injected to the Electron Beam Ion Source (EBIS), where ions are then highly ionized to fit to the following accelerator’s Q/M acceptance, like Au32+. Recently we upgraded the LIS to be able to provide two different beams into EBIS on a pulse-to-pulse basis. Now the LIS is simultaneously providing beams for both the Relativistic Heavy Ion Collider (RHIC) and NASA Space Radiation Laboratory (NSRL).

  1. Highly charged ions from laser-cluster interactions: local-field-enhanced impact ionization and frustrated electron-ion recombination.

    Science.gov (United States)

    Fennel, Thomas; Ramunno, Lora; Brabec, Thomas

    2007-12-07

    Our molecular dynamics analysis of Xe_{147-5083} clusters identifies two mechanisms that contribute to the yet unexplained observation of extremely highly charged ions in intense laser cluster experiments. First, electron impact ionization is enhanced by the local cluster electric field, increasing the highest charge states by up to 40%; a corresponding theoretical method is developed. Second, electron-ion recombination after the laser pulse is frustrated by acceleration electric fields typically used in ion detectors. This increases the highest charge states by up to 90%, as compared to the usual assumption of total recombination of all cluster-bound electrons. Both effects together augment the highest charge states by up to 120%, in reasonable agreement with experiments.

  2. Dynamics of Protonated Peptide Ion Collisions with Organic Surfaces: Consonance of Simulation and Experiment

    Energy Technology Data Exchange (ETDEWEB)

    Pratihar, Subha; Barnes, George L.; Laskin, Julia; Hase, William L.

    2016-08-18

    In this Perspective mass spectrometry experiments and chemical dynamics simulations are described which have explored the atomistic dynamics of protonated peptide ions, peptide-H+, colliding with organic surfaces. These studies have investigated surface-induced dissociation (SID) for which peptide-H+ fragments upon collision with the surface, peptide-H+ physisorption on the surface, soft landing (SL), and peptide-H+ reaction with the surface, reactive landing (RL). The simulations include QM+MM and QM/MM direct dynamics. For collisions with self-assembled monolayer (SAM) surfaces there is quite good agreement between experiment and simulation in the efficiency of energy transfer to the peptide-H+ ion’s internal degrees of freedom. Both the experiments and simulations show two mechanisms for peptide-H+ fragmentation, i.e. shattering and statistical, RRKM dynamics. Mechanisms for SL are probed in simulations of collisions of protonated dialanine with a perfluorinated SAM surface. RL has been studied experimentally for a number of peptide-H+ + surface systems, and qualitative agreement between simulation and experiment is found for two similar systems.

  3. Probing lithium-ion batteries' state-of-charge using ultrasonic transmission - Concept and laboratory testing

    Science.gov (United States)

    Gold, Lukas; Bach, Tobias; Virsik, Wolfgang; Schmitt, Angelika; Müller, Jana; Staab, Torsten E. M.; Sextl, Gerhard

    2017-03-01

    For electrically powered applications such as consumer electronics and especially for electric vehicles a precise state-of-charge estimation for their lithium-ion batteries is desired to reduce aging, e.g. avoiding detrimental states-of-charge. Today, this estimation is performed by battery management systems that solely rely on charge bookkeeping and cell voltage measurements. In the present work we introduce a new, physical probe for the state-of-charge based on ultrasonic transmission. Within the simple experimental setup raised cosine pulses are applied to lithium-ion battery pouch cells, whose signals are sensitive to changes in porosity of the graphite anode during charging/dis-charging and, therefore, to the state-of-charge. The underlying physical principle can be related to Biot's theory about propagation of waves in fluid saturated porous media and by including scattering by boundary layers inside the cell.

  4. Molecular effect on equilibrium charge-state distributions. [of nitrogen ions injected through carbon foil

    Science.gov (United States)

    Wickholm, D.; Bickel, W. S.

    1976-01-01

    The paper describes an experiment consisting of the acceleration of N(+) and N2(+) ions to energies between 0.25 and 1.75 MeV and their injection through a thin carbon foil, whereupon they were charge-state analyzed with an electrostatic analyzer. A foil-covered electrically suppressed Faraday cup, connected to a stepping motor, moved in the plane of the dispersed beams. The Faraday cup current, which was proportional to the number of incident ions, was sent to a current digitizer and computer programmed as a multiscaler. The energy-dependent charge-state fractions, the mean charge and the distribution width were calculated. It was shown that for incident atoms, the charge state distribution appeared to be spread over more charge states, while for the incident molecules, there was a greater fraction of charge states near the mean charge.

  5. Experiments and Researches on Production of Highly Charged Metallic Ions

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    To satisfy the requirements of HIRFL (Heavy Ion Research Facility in Lanzhou), series of experiments have been done to produce metallic ion beams on the 14.5 GHz ECR ion source. By now, numerous methods have been tested, in which oven heating and MIVOC (Metallic Ion from Volatile Compounds) are both included.According to the experiments, the results show that oven heating is much better than MIVOC. In most of our

  6. The negatively charged regions of lactoferrin binding protein B, an adaptation against anti-microbial peptides.

    Science.gov (United States)

    Morgenthau, Ari; Beddek, Amanda; Schryvers, Anthony B

    2014-01-01

    Lactoferrin binding protein B (LbpB) is a bi-lobed membrane bound lipoprotein that is part of the lactoferrin receptor complex in a variety of Gram-negative pathogens. Despite high sequence diversity among LbpBs from various strains and species, a cluster of negatively charged amino acids is invariably present in the protein's C-terminal lobe in all species except Moraxella bovis. The function of LbpB in iron acquisition has yet to be experimentally demonstrated, whereas in vitro studies have shown that LbpB confers protection against lactoferricin, a short cationic antimicrobial peptide released from the N- terminus of lactoferrin. In this study we demonstrate that the negatively charged regions can be removed from the Neisseria meningitidis LbpB without compromising stability, and this results in the inability of LbpB to protect against the bactericidal effects of lactoferricin. The release of LbpB from the cell surface by the autotransporter NalP reduces the protection against lactoferricin in the in vitro killing assay, attributed to removal of LbpB during washing steps, but is unlikely to have a similar impact in vivo. The protective effect of the negatively charged polysaccharide capsule in the killing assay was less than the protection conferred by LbpB, suggesting that LbpB plays a major role in protection against cationic antimicrobial peptides in vivo. The selective release of LbpB by NalP has been proposed to be a mechanism for evading the adaptive immune response, by reducing the antibody binding to the cell surface, but may also provide insights into the primary function of LbpB in vivo. Although TbpB and LbpB have been shown to be major targets of the human immune response, the selective release of LbpB suggests that unlike TbpB, LbpB may not be essential for iron acquisition, but important for protection against cationic antimicrobial peptides.

  7. The negatively charged regions of lactoferrin binding protein B, an adaptation against anti-microbial peptides.

    Directory of Open Access Journals (Sweden)

    Ari Morgenthau

    Full Text Available Lactoferrin binding protein B (LbpB is a bi-lobed membrane bound lipoprotein that is part of the lactoferrin receptor complex in a variety of Gram-negative pathogens. Despite high sequence diversity among LbpBs from various strains and species, a cluster of negatively charged amino acids is invariably present in the protein's C-terminal lobe in all species except Moraxella bovis. The function of LbpB in iron acquisition has yet to be experimentally demonstrated, whereas in vitro studies have shown that LbpB confers protection against lactoferricin, a short cationic antimicrobial peptide released from the N- terminus of lactoferrin. In this study we demonstrate that the negatively charged regions can be removed from the Neisseria meningitidis LbpB without compromising stability, and this results in the inability of LbpB to protect against the bactericidal effects of lactoferricin. The release of LbpB from the cell surface by the autotransporter NalP reduces the protection against lactoferricin in the in vitro killing assay, attributed to removal of LbpB during washing steps, but is unlikely to have a similar impact in vivo. The protective effect of the negatively charged polysaccharide capsule in the killing assay was less than the protection conferred by LbpB, suggesting that LbpB plays a major role in protection against cationic antimicrobial peptides in vivo. The selective release of LbpB by NalP has been proposed to be a mechanism for evading the adaptive immune response, by reducing the antibody binding to the cell surface, but may also provide insights into the primary function of LbpB in vivo. Although TbpB and LbpB have been shown to be major targets of the human immune response, the selective release of LbpB suggests that unlike TbpB, LbpB may not be essential for iron acquisition, but important for protection against cationic antimicrobial peptides.

  8. The Negatively Charged Regions of Lactoferrin Binding Protein B, an Adaptation against Anti-Microbial Peptides

    Science.gov (United States)

    Morgenthau, Ari; Beddek, Amanda; Schryvers, Anthony B.

    2014-01-01

    Lactoferrin binding protein B (LbpB) is a bi-lobed membrane bound lipoprotein that is part of the lactoferrin receptor complex in a variety of Gram-negative pathogens. Despite high sequence diversity among LbpBs from various strains and species, a cluster of negatively charged amino acids is invariably present in the protein’s C-terminal lobe in all species except Moraxella bovis. The function of LbpB in iron acquisition has yet to be experimentally demonstrated, whereas in vitro studies have shown that LbpB confers protection against lactoferricin, a short cationic antimicrobial peptide released from the N- terminus of lactoferrin. In this study we demonstrate that the negatively charged regions can be removed from the Neisseria meningitidis LbpB without compromising stability, and this results in the inability of LbpB to protect against the bactericidal effects of lactoferricin. The release of LbpB from the cell surface by the autotransporter NalP reduces the protection against lactoferricin in the in vitro killing assay, attributed to removal of LbpB during washing steps, but is unlikely to have a similar impact in vivo. The protective effect of the negatively charged polysaccharide capsule in the killing assay was less than the protection conferred by LbpB, suggesting that LbpB plays a major role in protection against cationic antimicrobial peptides in vivo. The selective release of LbpB by NalP has been proposed to be a mechanism for evading the adaptive immune response, by reducing the antibody binding to the cell surface, but may also provide insights into the primary function of LbpB in vivo. Although TbpB and LbpB have been shown to be major targets of the human immune response, the selective release of LbpB suggests that unlike TbpB, LbpB may not be essential for iron acquisition, but important for protection against cationic antimicrobial peptides. PMID:24465982

  9. Aberration of a negative ion beam caused by space charge effect

    Energy Technology Data Exchange (ETDEWEB)

    Miyamoto, K. [Naruto University of Education, 748 Nakashima, Takashima, Naruto-cho, Naruto-shi, Tokushima 772-8502 (Japan); Wada, S.; Hatayama, A. [Faculty of Science and Technology, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokohama 223-8522 (Japan)

    2010-02-15

    Aberrations are inevitable when the charged particle beams are extracted, accelerated, transmitted, and focused with electrostatic and magnetic fields. In this study, we investigate the aberration of a negative ion accelerator for a neutral beam injector theoretically, especially the spherical aberration caused by the negative ion beam expansion due to the space charge effect. The negative ion current density profiles with the spherical aberration are compared with those without the spherical aberration. It is found that the negative ion current density profiles in a log scale are tailed due to the spherical aberration.

  10. The description of charge transfer in fast negative ions scattering on water covered Si(100) surfaces

    Science.gov (United States)

    Chen, Lin; Qiu, Shunli; Liu, Pinyang; Xiong, Feifei; Lu, Jianjie; Liu, Yuefeng; Li, Guopeng; Liu, Yiran; Ren, Fei; Xiao, Yunqing; Gao, Lei; Zhao, Qiushuang; Ding, Bin; Li, Yuan; Guo, Yanling; Chen, Ximeng

    2016-11-01

    Doping has significantly affected the characteristics and performance of semiconductor electronic devices. In this work, we study the charge transfer processes for 8.5-22.5 keV C- and F- ions scattering on H2O-terminated p-type Si(100) surfaces with two different doping concentrations. We find that doping has no influence on negative-ion formation for fast collisions in this relatively high energy range. Moreover, we build a model to calculate negative ion fractions including the contribution from positive ions. The calculations support the nonadiabatic feature of charge transfer.

  11. CrossRef Space-charge effects in Penning ion traps

    CERN Document Server

    Porobić, T; Breitenfeldt, M; Couratin, C; Finlay, P; Knecht, A; Fabian, X; Friedag, P; Fléchard, X; Liénard, E; Ban, G; Zákoucký, D; Soti, G; Van Gorp, S; Weinheimer, Ch; Wursten, E; Severijns, N

    2015-01-01

    The influence of space-charge on ion cyclotron resonances and magnetron eigenfrequency in a gas-filled Penning ion trap has been investigated. Off-line measurements with View the MathML source using the cooling trap of the WITCH retardation spectrometer-based setup at ISOLDE/CERN were performed. Experimental ion cyclotron resonances were compared with ab initio Coulomb simulations and found to be in agreement. As an important systematic effect of the WITCH experiment, the magnetron eigenfrequency of the ion cloud was studied under increasing space-charge conditions. Finally, the helium buffer gas pressure in the Penning trap was determined by comparing experimental cooling rates with simulations.

  12. Time-dependent cylindrical and spherical ion-acoustic solitary structures in relativistic degenerate multi-ion plasmas with positively-charged heavy ions

    Energy Technology Data Exchange (ETDEWEB)

    Hossen, M. R.; Nahar, L.; Mamun, A. A. [Jahangirnagar University,Savar, Dhaka (Bangladesh)

    2014-12-15

    The properties of time-dependent cylindrical and spherical, modified ion-acoustic (mIA) solitary structures in relativistic degenerate multi-ion plasmas (containing degenerate electron fluids, inertial positively-, as well as negatively-, charged light ions, and positively-charged static heavy ions) have been investigated theoretically. This investigation is valid for both non-relativistic and ultrarelativistic limits. The well-known reductive perturbation method has been used to derive the Korteweg-de Vries (K-dV) and the mK-dV equations for studying the basic features of solitary waves. The fundamental characteristics of mIA solitary waves are found to be significantly modified by the effects of the degenerate pressures of the electron and the ion fluids, their number densities, and the various charge states of heavy ions. The relevance of our results in astrophysical compact objects like white dwarfs and neutron stars, which are of scientific interest, is briefly discussed.

  13. Rate equation approach to understanding the ion-catalyzed formation of peptides

    Science.gov (United States)

    Dubrovskii, V. G.; Sibirev, N. V.; Eliseev, I. E.; Vyazmin, S. Yu; Boitsov, V. M.; Natochin, Yu. V.; Dubina, M. V.

    2013-06-01

    The salt-induced peptide formation is important for assessing and approaching schemes of molecular evolution. Here, we present experimental data and an exactly solvable kinetic model describing the linear polymerization of L-glutamic amino acid in water solutions with different concentrations of KCl and NaCl. The length distributions of peptides are well fitted by the model. Strikingly, we find that KCl considerably enhances the peptide yield, while NaCl does not show any catalytic effect in most cases under our experimental conditions. The greater catalytic effect of potassium ions is entirely interpreted by one and single parameter, the polymerization rate constant that depends on the concentration of a given salt in the reaction mixture. We deduce numeric estimates for the rate constant at different concentrations of the ions and show that it is always larger for KCl. This leads to an exponential increase of the potassium- to sodium-catalyzed peptide concentration ratio with length. Our results show that the ion-catalyzed peptides have a higher probability to emerge in excess potassium rather than in sodium-rich water solutions.

  14. Utility of immonium ions for assignment of epsilon-N-acetyllysine-containing peptides by tandem mass spectrometry

    DEFF Research Database (Denmark)

    Trelle, Morten B; Jensen, Ole Nørregaard

    2008-01-01

    Tandem mass spectrometry (MS/MS) is a powerful tool for characterization of post-translationally modified proteins, including epsilon-N-acetyllysine-containing species. Previous reports indicate that epsilon-N-acetyllysine immonium ions are useful marker ions for peptides containing epsilon......-N-acetyllysine, but the specificity and sensitivity of these ions for assignment of lysine acetylation by MS/MS have not been studied in detail. We investigated MS/MS data sets of 172 epsilon-N-acetyllysine tryptic peptides and 268 nonacetylated tryptic peptides to establish the utility and reliability of epsilon......-N-acetyllysine immonium ions for identification and validation of acetylated peptides. Our analysis shows that the immonium ion at m/z 143 lacks specificity for lysine-acetylated peptides, whereas the derivative at m/z 126 is highly specific (98.1%). We also studied the positional effect of the epsilon...

  15. Proton-driven amide bond-cleavage pathways of gas-phase peptide ions lacking mobile protons.

    Science.gov (United States)

    Bythell, Benjamin J; Suhai, Sándor; Somogyi, Arpád; Paizs, Béla

    2009-10-07

    The mobile proton model (Dongre, A. R., Jones, J. L., Somogyi, A. and Wysocki, V. H. J. Am. Chem. Soc. 1996, 118 , 8365-8374) of peptide fragmentation states that the ionizing protons play a critical role in the gas-phase fragmentation of protonated peptides upon collision-induced dissociation (CID). The model distinguishes two classes of peptide ions, those with or without easily mobilizable protons. For the former class mild excitation leads to proton transfer reactions which populate amide nitrogen protonation sites. This enables facile amide bond cleavage and thus the formation of b and y sequence ions. In contrast, the latter class of peptide ions contains strongly basic functionalities which sequester the ionizing protons, thereby often hindering formation of sequence ions. Here we describe the proton-driven amide bond cleavages necessary to produce b and y ions from peptide ions lacking easily mobilizable protons. We show that this important class of peptide ions fragments by different means from those with easily mobilizable protons. We present three new amide bond cleavage mechanisms which involve salt-bridge, anhydride, and imine enol intermediates, respectively. All three new mechanisms are less energetically demanding than the classical oxazolone b(n)-y(m) pathway. These mechanisms offer an explanation for the formation of b and y ions from peptide ions with sequestered ionizing protons which are routinely fragmented in large-scale proteomics experiments.

  16. Influence of argon and oxygen on charge-state-resolved ion energydistributions of filtered aluminum arcs

    Energy Technology Data Exchange (ETDEWEB)

    Rosen, Johanna; Anders, Andre; Mraz, Stanislav; Atiser, Adil; Schneider, Jochen M.

    2006-03-23

    The charge-state-resolved ion energy distributions (IEDs) in filtered aluminum vacuum arc plasmas were measured and analyzed at different oxygen and argon pressures in the range 0.5 8.0 mTorr. A significant reduction of the ion energy was detected as the pressure was increased, most pronounced in an argon environment and for the higher charge states. The corresponding average charge state decreased from 1.87 to 1.0 with increasing pressure. The IEDs of all metal ions in oxygen were fitted with shifted Maxwellian distributions. The results show that it is possible to obtain a plasma composition with a narrow charge-state distribution as well as a narrow IED. These data may enable tailoring thin-film properties through selecting growth conditions that are characterized by predefined charge state and energy distributions.

  17. Recoil ion charge state distributions in low energy Ar{sup q+} {minus} Ar collisions

    Energy Technology Data Exchange (ETDEWEB)

    Vancura, J.; Marchetti, V.; Kostroun, V.O.

    1992-12-31

    We have measured the recoil ion charge state distributions in Ar{sup q+} -- Ar (8{le}q{le}16) collisions at 2.3 qkeV and 0.18qkeV by time of flight (TOF) spectroscopy. For Ar{sup 8-16+}, recoil ion charge states up to 6+ are clearly present, indicating that the 3p subshell in the target atom is being depleted, while for Ar{sup 10-16+}, there is evidence that target 3s electrons are also being removed. Comparison of the recoil ion charge state spectra at 2.3 and 0.18 qkeV shows that for a given projectile charge, there is very little dependence of the observed recoil target charge state distribution on projectile energy.

  18. The effect of the charging protocol on the cycle life of a Li-ion battery

    Science.gov (United States)

    Zhang, Sheng Shui

    The effect of the charging protocol on the cycle life of a commercial 18650 Li-ion cell was studied using three methods: (1) constant current (CC) charging, (2) constant power (CP) charging, and (3) multistage constant current (MCC) charging. The MCC-charging consists of two CC steps, which starts with a low current to charge the initial 10% capacity followed by a high current charging until the cell voltage reaches 4.2 V. Using these methods, respectively, the cell was charged to 4.2 V followed by a constant voltage (CV) charging until the current declined to 0.05 C. Results showed that the cycle life of the cell strongly depended on the charging protocol even if the same charging rate was used. Among these three methods, the CC-method was found to be more suitable for slow charging (0.5 C) while the CP-method was better for fast charging (1 C). Impedance analyses indicated that the capacity loss during cycling was mainly attributed to the increase of charge-transfer resistance as a result of the progressive growth of surface layers on the surface of two electrodes. Fast charging resulted in an accelerated capacity fading due to the loss of Li + ions and the related growth of a surface layer, which was associated with metallic lithium plating onto the anode and a high polarization at the electrolyte-electrode interface. Analyses of the cell electrochemistry showed that use of a reduced current to charge the initial 10% capacity and near the end of charge, respectively, was favorable for long cycle life.

  19. A peptide-gated ion channel from the freshwater polyp Hydra

    DEFF Research Database (Denmark)

    Golubovic, Andjelko; Kuhn, Anne; Williamson, Michael;

    2007-01-01

    regarded as a curiosity, and it was not known whether peptide-gated ionotropic receptors are also present in other animal groups. Nervous systems first evolved in cnidarians, which extensively use neuropeptides. Here we report cloning from the freshwater cnidarian Hydra of a novel ion channel (Hydra sodium...

  20. Electrical detection of the biological interaction of a charged peptide via gallium arsenide junction-field-effect transistors

    OpenAIRE

    Lee, Kangho; Nair, Pradeep R.; Alam, Muhammad A.; Janes, David B.; Wampler, Heeyeon P; Zemlyanov, Dmitry; Ivanisevic, Albena

    2008-01-01

    GaAs junction-field-effect transistors (JFETs) are utilized to achieve label-free detection of biological interaction between a probe transactivating transcriptional activator (TAT) peptide and the target trans-activation-responsive (TAR) RNA. The TAT peptide is a short sequence derived from the human immunodeficiency virus-type 1 TAT protein. The GaAs JFETs are modified with a mixed adlayer of 1-octadecanethiol (ODT) and TAT peptide, with the ODT passivating the GaAs surface from polar ions ...

  1. Bound state properties and photodetachment of the negatively charged hydrogen ions

    Science.gov (United States)

    Frolov, Alexei M.

    2015-05-01

    Absorption of infrared and visible radiation from stellar emission spectra by the negatively charged hydrogen ions H- is considered. The explicit formula for the photodetachment cross-section of the negatively charged hydrogen ion(s) is derived. Photodetachemnt cross-sections of the {∞}H-, {3}H- (or T-), {2}H- (or D-) and {1}H- ions are determined to high accuracy and for a large number of photo-electron momenta/energies. We introduce criteria which can be used to evaluate the overall quality of highly accurate wave functions of the hydrogen ion(s). One of these criteria is based on highly accurate calculations of the lowest order QED corrections in the negatively charged hydrogen ions, including {1}H- (protium), {2}H- (deuterium), {3}H- (tritium) and model ion with the infinitely heavy nucleus {∞}H-. An effective approach has been developed to calculate three-body integrals with the Bessel functions of different orders. Some preliminary evaluations of the phototdetachment cross-sections of the negatively charged hydrogen ions are performed. Inverse bremsstrahlung in the field of the neutral hydrogen atom is briefly discussed.

  2. A New Poisson-Nernst-Planck Model with Ion-Water Interactions for Charge Transport in Ion Channels.

    Science.gov (United States)

    Chen, Duan

    2016-08-01

    In this work, we propose a new Poisson-Nernst-Planck (PNP) model with ion-water interactions for biological charge transport in ion channels. Due to narrow geometries of these membrane proteins, ion-water interaction is critical for both dielectric property of water molecules in channel pore and transport dynamics of mobile ions. We model the ion-water interaction energy based on realistic experimental observations in an efficient mean-field approach. Variation of a total energy functional of the biological system yields a new PNP-type continuum model. Numerical simulations show that the proposed model with ion-water interaction energy has the new features that quantitatively describe dielectric properties of water molecules in narrow pores and are possible to model the selectivity of some ion channels.

  3. Microbeam Studies of Diffusion Time Resolved Ion Beam Induced Charge Collection from Stripe-Like Junctions

    Energy Technology Data Exchange (ETDEWEB)

    GUO,B.N.; BOUANANI,M.E.; RENFROW,S.N.; WALSH,DAVID S.; DOYLE,BARNEY L.; ATON,T.J.; SMITH,E.B.; BAUMANN,R.C.; DUGGAN,J.L.; MCDANIEL,F.D.

    2000-06-14

    To design more radiation tolerant Integrated Circuits (ICs), it is essential to create and test accurate models of ionizing radiation induced charge collection dynamics within microcircuits. A new technique, Diffusion Time Resolved Ion Beam Induced Charge Collection (DTRIBICC), is proposed to measure the average arrival time of the diffused charge at the junction. Specially designed stripe-like junctions were experimentally studied using a 12 MeV carbon microbeam with a spot size of 1 {micro}m. The relative arrival time of ion-generated charge is measured along with the charge collection using a multiple parameter data acquisition system. The results show the importance of the diffused charge collection by junctions, which is especially significant in accounting for Multiple Bit Upset (MBUs) in digital devices.

  4. Net-charge probability distributions in heavy ion collisions at chemical freeze-out

    CERN Document Server

    Braun-Munzinger, P; Karsch, F; Redlich, K; Skokov, V

    2011-01-01

    We explore net charge probability distributions in heavy ion collisions within the hadron resonance gas model. The distributions for strangeness, electric charge and baryon number are derived. We show that, within this model, net charge probability distributions and the resulting fluctuations can be computed directly from the measured yields of charged and multi-charged hadrons. The influence of multi-charged particles and quantum statistics on the shape of the distribution is examined. We discuss the properties of the net proton distribution along the chemical freeze-out line. The model results presented here can be compared with data at RHIC energies and at the LHC to possibly search for the relation between chemical freeze-out and QCD cross-over lines in heavy ion collisions.

  5. Highly charged ions impinging on a stepped metal surface under grazing incidence

    NARCIS (Netherlands)

    Robin, A; Niemann, D; Stolterfoht, N; Heiland, W

    2003-01-01

    We report on energy loss measurements and charge state distributions for 60 keV N6+ and 75 keV N5+ ions scattered off a Pt(110)(1x2) single crystal surface. In particular, the influence of surface steps on the energy loss and the outgoing charge states is discussed. The scattering angle and the angl

  6. Charge state studies of low energy heavy ions passing through hydrogen and helium gas

    CERN Document Server

    Liu, W; Buchmann, L; Chen, A A; D'Auria, J M; D'Onofrio, A; Engel, S; Gialanella, L; Greife, U; Hunter, D; Hussein, A; Hutcheon, D A; Olin, A; Ottewell, D; Rogalla, D; Rogers, J; Romano, M; Roy, G; Terrasi, F

    2003-01-01

    Studies of the charge state distribution of low energy (<1.5 MeV/u), low Z (<13) heavy ions passing through hydrogen and helium gas of varying target pressure have been performed using separate windowless gas target systems at TRIUMF and the University of Naples. Semi-empirical relationships have been deduced to estimate the equilibrium charge state distributions as a function of beam energy. From these distributions, cross-sections for the relevant charge changing reactions have been deduced.

  7. Development of an Electrochemical Metal-Ion Biosensor Using Self-Assembled Peptide Nanofibrils

    DEFF Research Database (Denmark)

    Viguier, Bruno; Zor, Kinga; Kasotakis, Emmanouil

    2011-01-01

    This article describes the combination of self-assembled peptide nanofibrils with metal electrodes for the development of an electrochemical metal-ion biosensor. The biological nanofibrils were immobilized on gold electrodes and used as biorecognition elements for the complexation with copper ions...... to complex with copper ions in solution. The response of the obtained biosensor was linear up to 50 µM copper and presented a sensitivity of 0.68 µAcm-2µM-1. Moreover, the fabricated sensor could be regenerated to a copper-free state allowing its re-utilization....

  8. Ion mobility-mass spectrometry of charge-reduced protein complexes reveals general trends in the collisional ejection of compact subunits.

    Science.gov (United States)

    Bornschein, Russell E; Ruotolo, Brandon T

    2015-10-21

    Multiprotein complexes have been shown to play critical roles across a wide range of cellular functions, but most probes of protein quaternary structure are limited in their ability to analyze complex mixtures and polydisperse structures using small amounts of total protein. Ion mobility-mass spectrometry offers a solution to many of these challenges, but relies upon gas-phase measurements of intact multiprotein complexes, subcomplexes, and subunits that correlate well with solution structures. The greatest bottleneck in such workflows is the generation of representative subcomplexes and subunits. Collisional activation of complexes can act to produce product ions reflective of protein complex composition, but such product ions are typically challenging to interpret in terms of their relationship to solution structure due to their typically string-like conformations following activation and subsequent dissociation. Here, we used ion-ion chemistry to perform a broad survey of the gas-phase dissociation of charge-reduced protein complex ions, revealing general trends associated with the collisional ejection of compact, rather than unfolded, protein subunits. Furthermore, we also discover peptide and co-factor dissociation channels that dominate the product ion populations generated for such charge reduced complexes. We assess both sets of observations and discuss general principles that can be extended to the analysis of protein complex ions having unknown structures.

  9. Electronic Structure, Dielectric Response, and Surface Charge Distribution of RGD (1FUV) Peptide

    Science.gov (United States)

    Adhikari, Puja; Wen, Amy M.; French, Roger H.; Parsegian, V. Adrian; Steinmetz, Nicole F.; Podgornik, Rudolf; Ching, Wai-Yim

    2014-07-01

    Long and short range molecular interactions govern molecular recognition and self-assembly of biological macromolecules. Microscopic parameters in the theories of these molecular interactions are either phenomenological or need to be calculated within a microscopic theory. We report a unified methodology for the ab initio quantum mechanical (QM) calculation that yields all the microscopic parameters, namely the partial charges as well as the frequency-dependent dielectric response function, that can then be taken as input for macroscopic theories of electrostatic, polar, and van der Waals-London dispersion intermolecular forces. We apply this methodology to obtain the electronic structure of the cyclic tripeptide RGD-4C (1FUV). This ab initio unified methodology yields the relevant parameters entering the long range interactions of biological macromolecules, providing accurate data for the partial charge distribution and the frequency-dependent dielectric response function of this peptide. These microscopic parameters determine the range and strength of the intricate intermolecular interactions between potential docking sites of the RGD-4C ligand and its integrin receptor.

  10. Removal of charged micropollutants from water by ion-exchange polymers -- effects of competing electrolytes.

    Science.gov (United States)

    Bäuerlein, Patrick S; Ter Laak, Thomas L; Hofman-Caris, Roberta C H M; de Voogt, Pim; Droge, Steven T J

    2012-10-15

    A wide variety of environmental compounds of concern, e.g. pharmaceuticals or illicit drugs, are acids or bases that may predominantly be present as charged species in drinking water sources. These charged micropollutants may prove difficult to remove by currently used water treatment steps (e.g. UV/H(2)O(2), activated carbon (AC) or membranes). We studied the sorption affinity of some ionic organic compounds to both AC and different charged polymeric materials. Ion-exchange polymers may be effective as additional extraction phases in water treatment, because sorption of all charged compounds to oppositely charged polymers was stronger than to AC, especially for the double-charged cation metformin. Tested below 1% of the polymer ion-exchange capacity, the sorption affinity of charged micropollutants is nonlinear and depends on the composition of the aqueous medium. Whereas oppositely charged electrolytes do not impact sorption of organic ions, equally charged electrolytes do influence sorption indicating ion-exchange (IE) to be the main sorption mechanism. For the tested polymers, a tenfold increased salt concentration lowered the IE-sorption affinity by a factor two. Different electrolytes affect IE with organic ions in a similar way as inorganic ions on IE-resins, and no clear differences in this trend were observed between the sulphonated and the carboxylated cation-exchanger. Sorption of organic cations is five fold less in Ca(2+) solutions compared to similar concentrations of Na(+), while that of anionic compounds is three fold weaker in SO(4)(2-) solutions compared to equal concentrations of Cl(-).

  11. Cyclic peptides-assisted trans- port of metal ions across liquid-organic membrane

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    The formation of alkali and alkaline-earth metal picrate complexes with cyclo(Pro-Gly)n ionophores (1, n = 3; 2, n = 4) can facilitate the migration of metal ions across a bulk liquid CH2Cl2 membrane. The migration behavior was studied by measuring the solution absorption at 356 nm, using a UV/Vis spectrophotometer, and the rates can be determined by comparing the initial absorption of donor solutions with the absorption of the corresponding receiver solutions as the function of time. It was found that cyclic peptide 1 shows higher transport activity for the studied alkali and alkaline-earth metal ions than compound 2, which is related to the backbone flexibility of the cyclic peptides. The findings in this work suggest that the rate of ionophore-facilitated ion transport depends not only on the ability of complex forma-tion in aqueous phase, but also on the ability of complex dissociation in organic phase.

  12. Prospects for Parity Non-conservation Experiments with Highly Charged Heavy Ions

    OpenAIRE

    Maul, M.; A. Schäfer; Greiner, W.; Indelicato, P.

    1996-01-01

    We discuss the prospects for parity non-conservation experiments with highly charged heavy ions. Energy levels and parity mixing for heavy ions with two to five electrons are calculated. We investigate two-photon-transitions and the possibility to observe interference effects between weak-matrix elements and Stark matrix elements for periodic electric field configurations.

  13. Prospects for parity-nonconservation experiments with highly charged heavy ions

    OpenAIRE

    Maul, Martin; Schäfer, Andreas; Greiner, Walter; Indelicato, Paul

    2006-01-01

    We discuss the prospects for parity-nonconservation experiments with highly charged heavy ions. Energy levels and parity mixing for heavy ions with 2–5 electrons are calculated. We investigate two-photon transitions and the possibility of observing interference effects between weak-matrix elements and Stark matrix elements for periodic electric field configurations.

  14. The study towards high intensity high charge state laser ion sources

    Science.gov (United States)

    Zhao, H. Y.; Jin, Q. Y.; Sha, S.; Zhang, J. J.; Li, Z. M.; Liu, W.; Sun, L. T.; Zhang, X. Z.; Zhao, H. W.

    2014-02-01

    As one of the candidate ion sources for a planned project, the High Intensity heavy-ion Accelerator Facility, a laser ion source has been being intensively studied at the Institute of Modern Physics in the past two years. The charge state distributions of ions produced by irradiating a pulsed 3 J/8 ns Nd:YAG laser on solid targets of a wide range of elements (C, Al, Ti, Ni, Ag, Ta, and Pb) were measured with an electrostatic ion analyzer spectrometer, which indicates that highly charged ions could be generated from low-to-medium mass elements with the present laser system, while the charge state distributions for high mass elements were relatively low. The shot-to-shot stability of ion pulses was monitored with a Faraday cup for carbon target. The fluctuations within ±2.5% for the peak current and total charge and ±6% for pulse duration were demonstrated with the present setup of the laser ion source, the suppression of which is still possible.

  15. SMILETRAP - A Penning trap facility for precision mass measurements using highly charged ions

    CERN Document Server

    Bergström, I; Fritioff, T; Douysset, G; Schoenfelder, J; Schuch, R

    2002-01-01

    The precision of mass measurements in a Penning trap increases linearly with the charge of the ion. Therefore we have attached a Penning trap, named SMILETRAP, to the electron beam ion source CRYSIS at MSL. CRYSIS is via an isotope separator connected to an ion source that can deliver singly charged ions of practically any element. In CRYSIS charge state breeding occurs by intense electron bombardment. We have shown that it is possible to produce, catch and measure the cyclotron frequencies of ions in the charge region 1+ to 52+. The relevant observable in mass measurements using a Penning trap is the ratio of the cyclotron frequencies of the ion of interest and ion used as a mass reference. High precision requires that the two frequencies are measured after one another in the shortest possible time. For reasons of convenience the precision trap operates at room temperature. So far it has been believed that warm traps working at 4 K are required for high mass precision with exactly one ion in the trap at a ti...

  16. Optimization of a charge-state analyzer for electron cyclotron resonance ion source beams

    NARCIS (Netherlands)

    Saminathan, S.; Beijers, J. P. M.; Kremers, H. R.; Mironov, V.; Mulder, J.; Brandenburg, S.

    2012-01-01

    A detailed experimental and simulation study of the extraction of a 24 keV He+ beam from an ECR ion source and the subsequent beam transport through an analyzing magnet is presented. We find that such a slow ion beam is very sensitive to space-charge forces, but also that the neutralization of the b

  17. Ion pair formation and primary charging behavior of titanium oxide (anastase and rutile)

    NARCIS (Netherlands)

    Bourikas, K.; Hiemstra, T.; Riemsdijk, van W.H.

    2001-01-01

    The primary charging behavior of titanium oxide (anatase, rutile, and P25) and the ion pair formation of the electrolyte ions with the surface groups have been extensively studied. A large number of titration and electrokinetic data sets available in the literature have been successfully described,

  18. The study towards high intensity high charge state laser ion sources.

    Science.gov (United States)

    Zhao, H Y; Jin, Q Y; Sha, S; Zhang, J J; Li, Z M; Liu, W; Sun, L T; Zhang, X Z; Zhao, H W

    2014-02-01

    As one of the candidate ion sources for a planned project, the High Intensity heavy-ion Accelerator Facility, a laser ion source has been being intensively studied at the Institute of Modern Physics in the past two years. The charge state distributions of ions produced by irradiating a pulsed 3 J/8 ns Nd:YAG laser on solid targets of a wide range of elements (C, Al, Ti, Ni, Ag, Ta, and Pb) were measured with an electrostatic ion analyzer spectrometer, which indicates that highly charged ions could be generated from low-to-medium mass elements with the present laser system, while the charge state distributions for high mass elements were relatively low. The shot-to-shot stability of ion pulses was monitored with a Faraday cup for carbon target. The fluctuations within ±2.5% for the peak current and total charge and ±6% for pulse duration were demonstrated with the present setup of the laser ion source, the suppression of which is still possible.

  19. Negative Ion CID Fragmentation of O-linked Oligosaccharide Aldoses—Charge Induced and Charge Remote Fragmentation

    Science.gov (United States)

    Doohan, Roisin A.; Hayes, Catherine A.; Harhen, Brendan; Karlsson, Niclas Göran

    2011-06-01

    Collision induced dissociation (CID) fragmentation was compared between reducing and reduced sulfated, sialylated, and neutral O-linked oligosaccharides. It was found that fragmentation of the [M - H]- ions of aldoses with acidic residues gave unique Z-fragmentation of the reducing end GalNAc containing the acidic C-6 branch, where the entire C-3 branch was lost. This fragmentation pathway, which is not seen in the alditols, showed that the process involved charge remote fragmentation catalyzed by a reducing end acidic anomeric proton. With structures containing sialic acid on both the C-3 and C-6 branch, the [M - H]- ions were dominated by the loss of sialic acid. This fragmentation pathway was also pronounced in the [M - 2H]2- ions revealing both the C-6 Z-fragment plus its complementary C-3 C-fragment in addition to glycosidic and cross ring fragmentation. This generation of the Z/C-fragment pairs from GalNAc showed that the charges were not participating in their generation. Fragmentation of neutral aldoses showed pronounced Z-fragmentation believed to be generated by proton migration from the C-6 branch to the negatively charged GalNAc residue followed by charge remote fragmentation similar to the acidic oligosaccharides. In addition, A-type fragments generated by charge induced fragmentation of neutral oligosaccharides were observed when the charge migrated from C-1 of the GalNAc to the GlcNAc residue followed by rearrangement to accommodate the 0,2A-fragmentation. LC-MS also showed that O-linked aldoses existed as interchangeable α/β pyranose anomers, in addition to a third isomer (25% of the total free aldose) believed to be the furanose form.

  20. Expanding Proteome Coverage with CHarge Ordered Parallel Ion aNalysis (CHOPIN) Combined with Broad Specificity Proteolysis.

    Science.gov (United States)

    Davis, Simon; Charles, Philip D; He, Lin; Mowlds, Peter; Kessler, Benedikt M; Fischer, Roman

    2017-03-03

    The "deep" proteome has been accessible by mass spectrometry for some time. However, the number of proteins identified in cells of the same type has plateaued at ∼8000-10 000 without ID transfer from reference proteomes/data. Moreover, limited sequence coverage hampers the discrimination of protein isoforms when using trypsin as standard protease. Multienzyme approaches appear to improve sequence coverage and subsequent isoform discrimination. Here we expanded proteome and protein sequence coverage in MCF-7 breast cancer cells to an as yet unmatched depth by employing a workflow that addresses current limitations in deep proteome analysis in multiple stages: We used (i) gel-aided sample preparation (GASP) and combined trypsin/elastase digests to increase peptide orthogonality, (ii) concatenated high-pH prefractionation, and (iii) CHarge Ordered Parallel Ion aNalysis (CHOPIN), available on an Orbitrap Fusion (Lumos) mass spectrometer, to achieve 57% median protein sequence coverage in 13 728 protein groups (8949 Unigene IDs) in a single cell line. CHOPIN allows the use of both detectors in the Orbitrap on predefined precursor types that optimizes parallel ion processing, leading to the identification of a total of 179 549 unique peptides covering the deep proteome in unprecedented detail.

  1. Laser Plasmas : Multiple charge states of titanium ions in laser produced plasma

    Indian Academy of Sciences (India)

    M Shukla; S Bandhyopadhyay; V N Rai; A V Kilpio; H C Pant

    2000-11-01

    An intense laser radiation (1012 to 1014 W/cm-2) focused on the solid target creates a hot (≥ 1 keV) and dense plasma having high ionization state. The multiple charged ions with high current densities produced during laser matter interaction have potential application in accelerators as an ion source. This paper presents generation and detection of highly stripped titanium ions (Ti) in laser produced plasma. An Nd:glass laser (KAMETRON) delivering 50 J energy ( = 0.53 m) in 2.5 ns was focused onto a titanium target to produce plasma. This plasma was allowed to drift across a space of ∼ 3 m through a diagnostic hole in the focusing mirror before ions are finally detected with the help of electrostatic ion analyzer. Maximum current density was detected for the charge states of +16 and +17 of Ti ions for laser intensity of ∼ 1014 W/cm-2.

  2. ECR Ion Source of High Charge States%高电荷态ECR离子源

    Institute of Scientific and Technical Information of China (English)

    张子民; 刘占稳; 赵红卫

    2000-01-01

    介绍了目前ECR离子源的发展状况和国际上几台典型的ECR离子源.%Electron cyclotron resonance (ECR) ion source is the most efficient facility for producing highly charged ions.So far more than 1 emA of O6+ and 0.02eμA of U55+ have been delivered by ECR ion source. In this paper the latest develop-ment of ECR ion source is presented and several typical ECR ion sources in the world is introduced.

  3. Charge distribution of Kr ions produced upon photoionization around the 2s edge

    Energy Technology Data Exchange (ETDEWEB)

    Santos, A.C.F., E-mail: toni@if.ufrj.br [Instituto de Física, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21991-972 (Brazil); Pilling, S. [Laboratório Nacional de Luz Síncroton, Campinas 13084-971 (Brazil); Almeida, D.P. [Departamento de Física, Universidade Federal de Santa Catarina, Florianópolis 88040-979 (Brazil)

    2015-08-15

    Highlights: • Charge spectra of Kr after photoionization of the L shell have been measured. • Multiple photoionization of krypton around the 2s edge is a collective process. • Electron correlation plays an important role in multiple ionization of heavy atoms. - Abstract: Charge state spectra of krypton ions generated after ionization (by a single photon) of the L shell have been measured by using the PEPICO technique. Relative abundances of Kr{sup q+} ions in charge state up to 8+ were obtained using monochromatized synchrotron radiation. A comparison with other experimental and theoretical data is presented.

  4. Structure and further fragmentation of significant [a3 + Na - H]+ ions from sodium-cationized peptides.

    Science.gov (United States)

    Wang, Huixin; Wang, Bing; Wei, Zhonglin; Zhang, Hao; Guo, Xinhua

    2015-01-01

    A good understanding of gas-phase fragmentation chemistry of peptides is important for accurate protein identification. Additional product ions obtained by sodiated peptides can provide useful sequence information supplementary to protonated peptides and improve protein identification. In this work, we first demonstrate that the sodiated a3 ions are abundant in the tandem mass spectra of sodium-cationized peptides although observations of a3 ions have rarely been reported in protonated peptides. Quantum chemical calculations combined with tandem mass spectrometry are used to investigate this phenomenon by using a model tetrapeptide GGAG. Our results reveal that the most stable [a3 + Na - H](+) ion is present as a bidentate linear structure in which the sodium cation coordinates to the two backbone carbonyl oxygen atoms. Due to structural inflexibility, further fragmentation of the [a3 + Na - H](+) ion needs to overcome several relatively high energetic barriers to form [b2 + Na - H](+) ion with a diketopiperazine structure. As a result, low abundance of [b2 + Na - H](+) ion is detected at relatively high collision energy. In addition, our computational data also indicate that the common oxazolone pathway to generate [b2 + Na - H](+) from the [a3 + Na - H](+) ion is unlikely. The present work provides a mechanistic insight into how a sodium ion affects the fragmentation behaviors of peptides.

  5. Influence of the Charge State on the Structures and Interactions of Vancomycin Antibiotics with Cell-Wall Analogue Peptides: Experimental and Theoretical Studies

    Energy Technology Data Exchange (ETDEWEB)

    Yang, Zhibo; Vorpagel, Erich R.; Laskin, Julia

    2009-02-16

    In this study we examined the effect of the charge state on the energetics and dynamics of dissociation of the non-covalent complex between the vancomycin and the cell wall peptide analogue Nα,Nε-diacetyl-L-Lys-D-Ala-D-Ala (V-Ac2KDADA). The binding energies between the vancomycin and the peptide were obtained from the RRKM modeling of the time- and energy resolved surface-induced dissociation (SID) experiments. Our results demonstrate that the stability of the complex toward fragmentation increases in the order: [V+Ac2KDADA+H]+2 < [V+Ac2KDADA+H]+ < [V+Ac2KDADA-H]-. Dissociation of the singly protonated and singly deprotonated complex is characterized by very large entropy effects indicating substantial increase in the conformational flexibility of the resulting products. The experimental threshold energies of 1.75 eV and 1.34 eV obtained for the [V+Ac2KDADA-H]- and [V+Ac2KDADA+H]+ , respectively, are in excellent agreement with the results of density functional theory (DFT) calculations. The increased stability of the deprotonated complex observed experimentally is attributed to the presence of three charged sites in the deprotonated complex as compared to only one charged site in the singly protonated complex. The low binding energy of 0.93 eV obtained for the doubly protonated complex suggests that this ion is destabilized by Coulomb repulsion between the singly protonated vancomycin and the singly protonated peptide comprising the complex.

  6. X-ray emission from charge exchange of highly-charged ions in atoms and molecules

    Science.gov (United States)

    Greenwood, J. B.; Williams, I. D.; Smith, S. J.; Chutjian, A.

    2000-01-01

    Charge exchange followed by radiative stabilization are the main processes responsible for the recent observations of X-ray emission from comets in their approach to the Sun. A new apparatus was constructed to measure, in collisions of HCIs with atoms and molecules, (a) absolute cross sections for single and multiple charge exchange, and (b) normalized X-ray emission cross sections.

  7. Gas-phase reactivity of peptide thiyl (RS•), perthiyl (RSS•), and sulfinyl (RSO•) radical ions formed from atmospheric pressure ion/radical reactions.

    Science.gov (United States)

    Tan, Lei; Xia, Yu

    2013-04-01

    In this study, we demonstrated the formation of gas-phase peptide perthiyl (RSS•) and thiyl (RS•) radical ions besides sulfinyl radical (RSO•) ions from atmospheric pressure (AP) ion/radical reactions of peptides containing inter-chain disulfide bonds. The identity of perthiyl radical was verified from characteristic 65 Da (•SSH) loss in collision-induced dissociation (CID). This signature loss was further used to assess the purity of peptide perthiyl radical ions formed from AP ion/radical reactions. Ion/molecule reactions combined with CID were carried out to confirm the formation of thiyl radical. Transmission mode ion/molecule reactions in collision cell (q2) were developed as a fast means to estimate the population of peptide thiyl radical ions. The reactivity of peptide thiyl, perthiyl, and sulfinyl radical ions was evaluated based on ion/molecule reactions toward organic disulfides, allyl iodide, organic thiol, and oxygen, which followed in order of thiyl (RS•) > perthiyl (RSS•) > sulfinyl (RSO•). The gas-phase reactivity of these three types of sulfur-based radicals is consistent with literature reports from solution studies.

  8. Spatial distribution of charged particles along the ion-optical axis in electron cyclotron resonance ion sources. Experimental results

    Energy Technology Data Exchange (ETDEWEB)

    Panitzsch, Lauri

    2013-02-08

    The experimental determination of the spatial distribution of charged particles along the ion-optical axis in electron cyclotron resonance ion sources (ECRIS) defines the focus of this thesis. The spatial distributions of different ion species were obtained in the object plane of the bending magnet ({approx}45 cm downstream from the plasma electrode) and in the plane of the plasma electrode itself, both in high spatial resolution. The results show that each of the different ion species forms a bloated, triangular structure in the aperture of the plasma electrode. The geometry and the orientation of these structures are defined by the superposition of the radial and axial magnetic fields. The radial extent of each structure is defined by the charge of the ion. Higher charge states occupy smaller, more concentrated structures. The total current density increases towards the center of the plasma electrode. The circular and star-like structures that can be observed in the beam profiles of strongly focused, extracted ion beams are each dominated by ions of a single charge state. In addition, the spatially resolved current density distribution of charged particles in the plasma chamber that impinge on the plasma electrode was determined, differentiating between ions and electrons. The experimental results of this work show that the electrons of the plasma are strongly connected to the magnetic field lines in the source and thus spatially well confined in a triangular-like structure. The intensity of the electrons increases towards the center of the plasma electrode and the plasma chamber, as well. These electrons are surrounded by a spatially far less confined and less intense ion population. All the findings mentioned above were already predicted in parts by simulations of different groups. However, the results presented within this thesis represent the first (and by now only) direct experimental verification of those predictions and are qualitatively transferable to

  9. Measurements of excitation spectra and level lifetimes for highly charged neon ions

    Institute of Scientific and Technical Information of China (English)

    王友德; 马新文; 杨治虎; 杜一飞; 刘惠萍; 赵孟春; 郭天瑞; 王春芳

    1997-01-01

    Beam foil experiments were carried out for 47 MeV Ne ions passing through C (39 μg/cm2) and Al (3 4mg/cm2) foils. Highly charged H-, He-, Li-, and Be-like ions were obtained after the foils. The excitation spectra and level lifetimes for these ions were measured, and transition configurations for most measured lines were identified

  10. Single and double charge transfer of He(2+) ions with molecules at near-thermal energies

    Science.gov (United States)

    Tosh, R. E.; Johnsen, R.

    1993-01-01

    Rate coefficients were measured for charge-transfer reactions of He(2+) ions with H2, N2, O2, CO, CO2, and H2O. The experiments were carried out using a selected-ion drift-tube mass spectrometer. Total rate coefficients are found to be very large and are generally close to the limiting Langevin capture rate coefficients or the corresponding ADO-model (Su and Bowers, 1973) coefficients. The product-ion spectra indicate that both single and double charge transfer and possibly transfer ionization occur in these reactions.

  11. High precision wavelength measurements of QED-sensitive forbidden transitions in highly charged argon ions.

    Science.gov (United States)

    Draganić, I; Crespo López-Urrutia, J R; DuBois, R; Fritzsche, S; Shabaev, V M; Orts, R Soria; Tupitsyn, I I; Zou, Y; Ullrich, J

    2003-10-31

    We present the results of an experimental study of magnetic dipole (M1) transitions in highly charged argon ions (Ar X, Ar XI, Ar XIV, Ar XV) in the visible spectral range using an electron beam ion trap. Their wavelengths were determined with, for highly charged ions, unprecedented accuracy up to the sub-ppm level and compared with theoretical calculations. The QED contributions, calculated in this Letter, are found to be 4 orders of magnitude larger than the experimental error and are absolutely indispensable to bring theory and experiment to a good agreement. This method shows great potential for the study of QED effects in relativistic few-electron systems.

  12. Possible Diamond-Like Nanoscale Structures Induced by Slow Highly-Charged Ions on Graphite (HOPG)

    Energy Technology Data Exchange (ETDEWEB)

    Sideras-Haddad, E.; Schenkel, T.; Shrivastava, S.; Makgato, T.; Batra, A.; Weis, C. D.; Persaud, A.; Erasmus, R.; Mwakikunga, B.

    2009-01-06

    The interaction between slow highly-charged ions (SHCI) of different charge states from an electron-beam ion trap and highly oriented pyrolytic graphite (HOPG) surfaces is studied in terms of modification of electronic states at single-ion impact nanosizeareas. Results are presented from AFM/STM analysis of the induced-surface topological features combined with Raman spectroscopy. I-V characteristics for a number of different impact regions were measured with STM and the results argue for possible formation of diamond-like nanoscale structures at the impact sites.

  13. Novel aspects on the irradiation of HOPG surfaces with slow highly charged ions

    Energy Technology Data Exchange (ETDEWEB)

    Ritter, R. [Institute of Applied Physics, TU Wien, 1040 Vienna (Austria); Shen, Q. [Institute of Physics, Montanuniversität Leoben, 8700 Leoben (Austria); Wilhelm, R.A. [Institute of Ion Beam Physics and Materials Research, Helmholtz-Zentrum Dresden-Rossendorf, 01328 Dresden (Germany); Technische Universität Dresden, 01062 Dresden (Germany); Heller, R. [Institute of Ion Beam Physics and Materials Research, Helmholtz-Zentrum Dresden-Rossendorf, 01328 Dresden (Germany); Ginzel, R.; Crespo López-Urrutia, J.R. [Max Planck Institute for Nuclear Physics, 69117 Heidelberg (Germany); Facsko, S. [Institute of Ion Beam Physics and Materials Research, Helmholtz-Zentrum Dresden-Rossendorf, 01328 Dresden (Germany); Teichert, C. [Institute of Physics, Montanuniversität Leoben, 8700 Leoben (Austria); Aumayr, F., E-mail: aumayr@iap.tuwien.ac.at [Institute of Applied Physics, TU Wien, 1040 Vienna (Austria)

    2013-11-15

    As a continuation of our previous work, we present new results regarding the interaction of slow highly charged ions with HOPG. Lateral atomic force microscopy measurements with calibrated cantilevers were performed to investigate in more detail the locally enhanced friction at ion impact sites, which has been reported earlier. For very high charge states, apart from ever-present changes in frictional and electronic properties, we find evidence for true topographic surface modifications (hillocks). In complementary studies, we have investigated these structures regarding their conductivity by employing high-resolution conductive atomic force microscopy. In addition, we demonstrate the possibility to etch ion-induced surface structures by thermal annealing.

  14. Neutralization Of Multiply Charged Rydberg Ions Interacting With Solid Surfaces Under The Grazing Incidence Geometry

    Science.gov (United States)

    Majkic, M. D.; Nedeljkovic, N. N.; Galijas, S. M. D.

    2010-07-01

    We elaborated the time-symmetric, two-state vector model to investigate the intermediate stages of the electron capture into the Rydberg states of multiply charged ions interacting with solid surface under the grazing incidence geometry. The neutralization distances for the ions XeZ+ interacting with Al-surface are calculated, for core charges Z ?[5,30]. The corresponding mean neutralization distances are in agreement with the data deduced from the measured kinetic energy gain due to the image acceleration of the ions.

  15. Efficiently photo-charging lithium-ion battery by perovskite solar cell

    OpenAIRE

    Xu, Jiantie; Chen, Yonghua; Dai, Liming

    2015-01-01

    Electric vehicles using lithium-ion battery pack(s) for propulsion have recently attracted a great deal of interest. The large-scale practical application of battery electric vehicles may not be realized unless lithium-ion batteries with self-charging suppliers will be developed. Solar cells offer an attractive option for directly photo-charging lithium-ion batteries. Here we demonstrate the use of perovskite solar cell packs with four single CH3NH3PbI3 based solar cells connected in series f...

  16. Charge breeding results and future prospects with electron cyclotron resonance ion source and electron beam ion source (invited).

    Science.gov (United States)

    Vondrasek, R; Levand, A; Pardo, R; Savard, G; Scott, R

    2012-02-01

    The Californium Rare Ion Breeder Upgrade (CARIBU) of the Argonne National Laboratory ATLAS facility will provide low-energy and reaccelerated neutron-rich radioactive beams for the nuclear physics program. A 70 mCi (252)Cf source produces fission fragments which are thermalized and collected by a helium gas catcher into a low-energy particle beam with a charge of 1+ or 2+. An electron cyclotron resonance (ECR) ion source functions as a charge breeder in order to raise the ion charge sufficiently for acceleration in the ATLAS linac. The final CARIBU configuration will utilize a 1 Ci (252)Cf source to produce radioactive beams with intensities up to 10(6) ions∕s for use in the ATLAS facility. The ECR charge breeder has been tested with stable beam injection and has achieved charge breeding efficiencies of 3.6% for (23)Na(8+), 15.6% for (84)Kr(17+), and 13.7% for (85)Rb(19+) with typical breeding times of 10 ms∕charge state. For the first radioactive beams, a charge breeding efficiency of 11.7% has been achieved for (143)Cs(27+) and 14.7% for (143)Ba(27+). The project has been commissioned with a radioactive beam of (143)Ba(27+) accelerated to 6.1 MeV∕u. In order to take advantage of its lower residual contamination, an EBIS charge breeder will replace the ECR charge breeder in the next two years. The advantages and disadvantages of the two techniques are compared taking into account the requirements of the next generation radioactive beam facilities.

  17. Langevin Poisson-Boltzmann equation: point-like ions and water dipoles near a charged surface.

    Science.gov (United States)

    Gongadze, Ekaterina; van Rienen, Ursula; Kralj-Iglič, Veronika; Iglič, Aleš

    2011-06-01

    Water ordering near a charged membrane surface is important for many biological processes such as binding of ligands to a membrane or transport of ions across it. In this work, the mean-field Poisson-Boltzmann theory for point-like ions, describing an electrolyte solution in contact with a planar charged surface, is modified by including the orientational ordering of water. Water molecules are considered as Langevin dipoles, while the number density of water is assumed to be constant everywhere in the electrolyte solution. It is shown that the dielectric permittivity of an electrolyte close to a charged surface is decreased due to the increased orientational ordering of water dipoles. The dielectric permittivity close to the charged surface is additionally decreased due to the finite size of ions and dipoles.

  18. Tuning the Fabrication of Nanostructures by Low-Energy Highly Charged Ions

    Science.gov (United States)

    El-Said, Ayman S.; Wilhelm, Richard A.; Heller, Rene; Sorokin, Michael; Facsko, Stefan; Aumayr, Friedrich

    2016-09-01

    Slow highly charged ions have been utilized recently for the creation of monotype surface nanostructures (craters, calderas, or hillocks) in different materials. In the present study, we report on the ability of slow highly charged xenon ions (129Xe Q+ ) to form three different types of nanostructures on the LiF(100) surface. By increasing the charge state from Q =15 to Q =36 , the shape of the impact induced nanostructures changes from craters to hillocks crossing an intermediate stage of caldera structures. A dimensional analysis of the nanostructures reveals an increase of the height up to 1.5 nm as a function of the potential energy of the incident ions. Based on the evolution of both the geometry and size of the created nanostructures, defect-mediated desorption and the development of a thermal spike are utilized as creation mechanisms of the nanostructures at low and high charge states, respectively.

  19. Tuning the Fabrication of Nanostructures by Low-Energy Highly Charged Ions.

    Science.gov (United States)

    El-Said, Ayman S; Wilhelm, Richard A; Heller, Rene; Sorokin, Michael; Facsko, Stefan; Aumayr, Friedrich

    2016-09-16

    Slow highly charged ions have been utilized recently for the creation of monotype surface nanostructures (craters, calderas, or hillocks) in different materials. In the present study, we report on the ability of slow highly charged xenon ions (^{129}Xe^{Q+}) to form three different types of nanostructures on the LiF(100) surface. By increasing the charge state from Q=15 to Q=36, the shape of the impact induced nanostructures changes from craters to hillocks crossing an intermediate stage of caldera structures. A dimensional analysis of the nanostructures reveals an increase of the height up to 1.5 nm as a function of the potential energy of the incident ions. Based on the evolution of both the geometry and size of the created nanostructures, defect-mediated desorption and the development of a thermal spike are utilized as creation mechanisms of the nanostructures at low and high charge states, respectively.

  20. Copper(II) ions and the Alzheimer's amyloid-β peptide: Affinity and stoichiometry of binding

    Science.gov (United States)

    Tõugu, Vello; Friedemann, Merlin; Tiiman, Ann; Palumaa, Peep

    2014-10-01

    Deposition of amyloid beta (Aβ) peptides into amyloid plaques is the hallmark of Alzheimer's disease. According to the amyloid cascade hypothesis this deposition is an early event and primary cause of the disease, however, the mechanisms that cause this deposition remain elusive. An increasing amount of evidence shows that the interactions of biometals can contribute to the fibrillization and amyloid formation by amyloidogenic peptides. From different anions the copper ions deserve the most attention since it can contribute not only toamyloid formation but also to its toxicity due to the generation of ROS. In this thesis we focus on the affinity and stoichiometry of copper(II) binding to the Aβ molecule.

  1. Aberrations due to solenoid focusing of a multiply charged high-current ion beam

    CERN Document Server

    Grégoire, G; Lisi, N; Schnuriger, J C; Scrivens, R; Tambini, J

    2000-01-01

    At the output of a laser ion source, a high current of highly charged ions with a large range of charge states is available. The focusing of such a beam by magnetic elements causes a nonlinear space-charge field to develop which can induce large aberrations and emittance growth in the beam. Simulation of the beam from the CERN laser ion source will be presented for an ideal magnetic and electrostatic system using a radially symmetric model. In addition, the three dimensional software KOBRA3 is used for the simulation of the solenoid line. The results of these simulations will be compared with experiments performed on the CERN laser ion source with solenoids (resulting in a hollow beam) and a series of gridded electrostatic lenses. (5 refs).

  2. Laboratory Studies of Thermal Energy Charge Transfer of Silicon and Iron Ions in Astrophysical Plasmas

    Science.gov (United States)

    Kwong, Victor H. S.

    1997-01-01

    The laser ablation/ion storage facility at the UNLV Physics Department is dedicated to the study of atomic processes in low temperature plasmas. Our current program is directed to the study of charge transfer of multiply charged ions and neutrals that are of importance to astrophysics at energies less than 1 eV (about 10(exp 4) K). Specifically, we measure the charge transfer rate coefficient of ions such as N(2+), Si(3+), Si(3+), with helium and Fe(2+) with molecular and atomic hydrogen. All these ions are found in a variety of astrophysical plasmas. Their electron transfer reactions with neutral atoms can affect the ionization equilibrium of the plasma.

  3. Penning traps with unitary architecture for storage of highly charged ions

    CERN Document Server

    Tan, Joseph N; Guise, Nicholas D; 10.1063/1.3685246

    2012-01-01

    Penning traps are made extremely compact by embedding rare-earth permanent magnets in the electrode structure. Axially-oriented NdFeB magnets are used in unitary architectures that couple the electric and magnetic components into an integrated structure. We have constructed a two- magnet Penning trap with radial access to enable the use of laser or atomic beams, as well as the collection of light. An experimental apparatus equipped with ion optics is installed at the NIST electron beam ion trap (EBIT) facility, constrained to fit within 1 meter at the end of a horizontal beamline for transporting highly charged ions. Highly charged ions of neon and argon, extracted with initial energies up to 4000 eV per unit charge, are captured and stored to study the confinement properties of a one-magnet trap and a two-magnet trap. Design considerations and some test results are discussed.

  4. Penning traps with unitary architecture for storage of highly charged ions.

    Science.gov (United States)

    Tan, Joseph N; Brewer, Samuel M; Guise, Nicholas D

    2012-02-01

    Penning traps are made extremely compact by embedding rare-earth permanent magnets in the electrode structure. Axially-oriented NdFeB magnets are used in unitary architectures that couple the electric and magnetic components into an integrated structure. We have constructed a two-magnet Penning trap with radial access to enable the use of laser or atomic beams, as well as the collection of light. An experimental apparatus equipped with ion optics is installed at the NIST electron beam ion trap (EBIT) facility, constrained to fit within 1 meter at the end of a horizontal beamline for transporting highly charged ions. Highly charged ions of neon and argon, extracted with initial energies up to 4000 eV per unit charge, are captured and stored to study the confinement properties of a one-magnet trap and a two-magnet trap. Design considerations and some test results are discussed.

  5. Charge states distribution of 3350 keV He ions channeled in silicon

    CERN Document Server

    Bentini, G G; Bianconi, M; Lotti, R; Lulli, G

    2002-01-01

    When an ion beam is aligned along a major crystalline axis the dominant interaction is with valence electrons. In this condition the charge exchange processes mostly concern the interaction between the incident ion and a quasi-free electron gas and a strong reduction of the charge-changing probabilities is expected. In this work, 3350 keV He sup + and He sup 2 sup + ions were aligned at small tilt angles about the axis of a 4650 A silicon crystalline membrane. The charge state distribution (CSD) of the transmitted ions was detected by an electro-magnetic analyzer having a very small acceptance angle. In these conditions the equilibration of the CSD was not yet reached and this allowed, making use of simple approximations, for the measurement of the valence electron loss cross-section.

  6. A Systematical Analysis of Tryptic Peptide Identification with Reverse Phase Liquid Chromatography and Electrospray Ion Trap Mass Spectrometry

    Institute of Scientific and Technical Information of China (English)

    Wei Sun; Shuzhen Wu; Xiaorong Wang; Dexian Zheng; Youhe Gao

    2004-01-01

    In this study we systematically analyzed the elution condition of tryptic peptides and the characteristics of identified peptides in reverse phase liquid chromatography and electrospray tandem mass spectrometry (RPLC-MS/MS) analysis. Following protein digestion with trypsin, the peptide mixture was analyzed by on-line RPLC-MS/MS. Bovine serum albumin (BSA) was used to optimize acetonitrile (ACN) elution gradient for tryptic peptides, and Cytochrome C was used to retest the gradient and the sensitivity of LC-MS/MS. The characteristics of identified peptides were also analyzed. In our experiments, the suitable ACN gradient is 5%to 30% for tryptic peptide elution and the sensitivity of LC-MS/MS is 50 fmol.Analysis of the tryptic peptides demonstrated that longer (more than 10 amino acids) and multi-charge state (+2,+3) peptides are likely to be identified, and the hydropathicity of the peptides might not be related to whether it is more likely to be identified or not. The number of identified peptides for a protein might be used to estimate its loading amount under the same sample background. Moreover, in this study the identified peptides present three types of redundancy, namely identification, charge, and sequence redundancy, which may repress low abundance protein identification.

  7. Zinc finger peptide based optic sensor for detection of zinc ions.

    Science.gov (United States)

    Verma, Neelam; Kaur, Gagandeep

    2016-12-15

    In the present work, polyacrylamide gel has been used as a matrix for the immobilization of zinc finger peptide and fluorescent dye acrydine orange on the micro well plate to fabricate the fluorescence based biosensor for the detection of zinc ions in milk samples. The fluorescent dye moves in the hydrophobic groove formed after folding of the peptide in the presence of zinc ions. Under optimized conditions, linear range was observed between 0.001µg/l to 10µg/l of Zinc ions, with a lowest detection limit of 0.001µg/l and response time of 5min. Presented biosensor has shown 20% decrease in fluorescent intensity values after 5 regenerations and stable for more than one month, stored at 4°C. Interference study with other metal ions like lead, cadmium and copper showed a negligible change in fluorescence intensity in comparison to zinc ions. Developed bio sensing system was found to be novel, quick, reliable, miniaturized, stable, reproducible and repeatable and specific for zinc ion, which has been applied to various milk samples.

  8. Sequence analysis on biological active peptides using electrospray ionization-Fourier transform ion cyclotron resonance mass spectrometer

    Institute of Scientific and Technical Information of China (English)

    CHEN Hui; XU Jiaxi; XIN Bin; HE Meiyu

    2005-01-01

    This paper describes experience with the sequencing of synthetic segment peptides of gp41 which are used in trimeric peptides as potential peptide-based vaccines and as inhibitors to mimic the fusion state of gp41 in HIV infection using ESI/CID-FT-ICR MS. All b and y″ series ions are found in the CID spectra and the mass difference between the calculated and observed results is very slight. FT-ICR MS again shows its power in peptide sequencing, successfully helping us obtain the sequence of an unknown peptide.

  9. Spectroscopic Identification of Cyclic Imide b2-Ions from Peptides Containing Gln and Asn Residues

    Science.gov (United States)

    Grzetic, Josipa; Oomens, Jos

    2013-08-01

    In mass-spectrometry based peptide sequencing, formation of b- and y-type fragments by cleavage of the amide C-N bond constitutes the main dissociation pathway of protonated peptides under low-energy collision induced dissociation (CID). The structure of the b 2 fragment ion from peptides containing glutamine (Gln) and asparagine (Asn) residues is investigated here by infrared ion spectroscopy using the free electron laser FELIX. The spectra are compared with theoretical spectra calculated using density functional theory for different possible isomeric structures as well as to experimental spectra of synthesized model systems. The spectra unambiguously show that the b2-ions do not possess the common oxazolone structure, nor do they possess the alternative diketopiperazine structure. Instead, cyclic imide structures are formed through nucleophilic attack by the amide nitrogen atom of the Gln and Asn side chains. The alternative pathway involving nucleophilic attack from the side-chain amide oxygen atom leading to cyclic isoimide structures, which had been suggested by several authors, can clearly be excluded based on the present IR spectra. This mechanism is perhaps surprising as the amide oxygen atom is considered to be the better nucleophile; however, computations show that the products formed via attack by the amide nitrogen are considerably lower in energy. Hence, b2-ions with Asn or Gln in the second position form structures with a five-membered succinimide or a six-membered glutarimide ring, respectively. b2-Ions formed from peptides with Asn in the first position are spectroscopically shown to possess the classical oxazolone structure.

  10. Analysis of proteins and peptides on a chromatographic timescale by electron-transfer dissociation MS

    OpenAIRE

    Udeshi, Namrata D.; Shabanowitz, Jeffrey; Hunt, Donald F.; Rose, Kristie L

    2007-01-01

    Peptide and protein sequence analysis using a combination of gas-phase ion–ion chemistry and tandem MS is described. Samples are converted to multiply charged ions by ESI and then allowed to react with fluoranthene radical anions in a quadrupole linear ion trap mass spectrometer. Electron transfer from the radical anion to the multiply charged peptide or protein promotes random fragmentation along the amide backbone that is independent of peptide or protein size, sequence, or the presence of ...

  11. PREFACE: 8th International Conference on the Physics of Highly Charged Ions (HCI-96)

    Science.gov (United States)

    Awaya, Yohko; Kambara, Tadashi

    1997-01-01

    These proceedings contain the papers presented at the Eighth International Conference on the Physics of Highly Charged Ions (HCI-96) which was held on September 23-26, 1996 in Omiya, Saitama, Japan, hosted by the Institute of Physical and Chemical Research (RIKEN). The first conference of this series was held in Stockholm, Sweden in 1982. The subject was the "Production and Physics of Highly Charged Ions". The conference has since been held every other year; in Oxford, UK (1984), Groningen, the Netherlands (1986), Grenoble, France (1988), Giessen, Germany (1990), Manhattan, Kansas, USA (1992) and Vienna, Austria (1994). When the first conference of this series was held, various highly charged ions were available from many heavy ion accelerators, which had been constructed since the 1960's, and ion sources such as EBIS and ECRIS, which were then new facilities. Subsequently, many other experimental techniques have been developed to study or to control highly charged ions, such as ion traps, EBIT's, storage rings, high-brilliance synchrotron radiation, and so forth. Now the properties of highly charged ions themselves and their interactions with various kinds of materials can be studied systematically using ions of any element at various collision energies. These studies will result in a deeper insight into their nature as well as giving us important basic data for use in the fields closely related to atomic physics. About 190 scientists from 18 countries registered at the HCI-96. The number of invited talks was 21 and that of contrib- uted papers 215. In these proceedings, 20 papers of invited talks and 116 papers on contributions are included. They are classified into categories of "Structure and Spectroscopy of Highly Charged Ions and Fundamental Aspects", "Highly Charged Ions in Plasmas and Strong Fields", "Interactions of Highly Charged Ions with Atoms and Ions", "Dynamic Processes Related to Molecules and Clusters", "Interactions of Highly Charged Ions with

  12. Properties of Laser-Produced Highly Charged Heavy Ions for Direct Injection Scheme

    CERN Document Server

    Sakakibara, Kazuhiko; Hayashizaki, Noriyosu; Ito, Taku; Kashiwagi, Hirotsugu; Okamura, Masahiro

    2005-01-01

    To accelerate highly charged intense ion beam, we have developed the Direct Plasma Injection Scheme (DPIS) with laser ion source. In this scheme an ion beam from a laser ion source is injected directly to a RFQ linac without a low energy beam transport (LEBT) and the beam loss in the LEBT can be avoided. We achieved high current acceleration of carbon ions (60mA) by DPIS with the high current optimized RFQ. As the next setp we will use heavier elements like Ag, Pb, Al and Cu as target in LIS (using CO2, Nd-YAG or other laser) for DPIS and will examine properties of laser-produced plasma (the relationship of between charge state and laser power density, the current dependence of the distance from the target, etc).

  13. Charge-to-mass-ratio-dependent ion heating during magnetic reconnection in the MST RFP

    Energy Technology Data Exchange (ETDEWEB)

    Kumar, S. T. A.; Almagri, A. F.; Den Hartog, D. J.; Nornberg, M. D.; Sarff, J. S.; Terry, P. W. [Department of Physics, University of Wisconsin-Madison, Madison, Wisconsin 53706 (United States); Center for Magnetic Self-Organization in Laboratory and Astrophysical Plasmas, University of Wisconsin-Madison, Madison, Wisconsin 53706 (United States); Craig, D. [Wheaton College, Wheaton, Illinois 60187 (United States)

    2013-05-15

    Temperature evolution during magnetic reconnection has been spectroscopically measured for various ion species in a toroidal magnetized plasma. Measurements are made predominantly in the direction parallel to the equilibrium magnetic field. It is found that the increase in parallel ion temperature during magnetic reconnection events increases with the charge-to-mass ratio of the ion species. This trend can be understood if the heating mechanism is anisotropic, favoring heating in the perpendicular degree of freedom, with collisional relaxation of multiple ion species. The charge-to-mass ratio trend for the parallel temperature derives from collisional isotropization. This result emphasizes that collisional isotropization and energy transfer must be carefully modeled when analyzing ion heating measurements and comparing to theoretical predictions.

  14. Space charge effect on parametric resonances of ion cloud in a linear Paul trap

    CERN Document Server

    Mandal, P; De Munshi, D; Dutta, T; Mukherjee, M

    2013-01-01

    The effect of the presence of a finite number of ions on their parametric resonances inside a Paul trap has been investigated both experimentally and theoretically. The Coulomb coupling among the charged particles results in two distinct phenomena: one is the frequency shift of the trapped ion oscillators and second is the collective oscillation of the trapped ion cloud. We observe both in a linear trap configuration. It is found that the strength and the secular frequency of individual ion-oscillation decrease while the strength of the collective oscillation increases with increasing number of trapped ions. The observation has been modeled by considering the space charge potential as an effective dc potential inside the trap. It describes the observations well within the experimental uncertainties.

  15. Surface Erosion of GaN Bombarded by Highly Charged 208Pbq+-Ions

    Institute of Scientific and Technical Information of China (English)

    ZHANG Li-Qing; ZHANG Chong-Hong; YANG Yi-Tao; YAO Cun-Feng; LI Bing-Sheng; JIN Yun-Fan; SUN You-Mei; SONG Shu-Jian

    2008-01-01

    Surface change of gallium nitride specimens after bombardment by highly charged Pbq+-ions (q=25, 35) at room temperature is studied by means of atomic force microscopy. The experimental results reveal that the surface of GaN specimens is significantly etched and erased. An unambiguous step-up is observed. The erosion depth not only strongly depends on the charge state of ions, but also is related to the incident angle of Pbq+ -ions and the ion dose. The erosion depth of the specimens in 60°incidence (tilted incidence) is significantly deeper than that of the normal incidence. The erosion behaviour of specimens has little dependence on the kinetic energy of ion (E,k=360, 700keV). On the other hand, surface roughness of the irradiated area is obviously decreased due to erosion compared with the un-irradiated area. A flat terrace is formed.

  16. Transverse Schottky spectra and beam transfer functions of coasting ion beams with space charge

    Energy Technology Data Exchange (ETDEWEB)

    Paret, Stefan

    2010-02-22

    A study of the transverse dynamics of coasting ion beams with moderate space charge is presented in this work. From the dispersion relation with linear space charge, an analytic model describing the impact of space charge on transverse beam transfer functions (BTFs) and the stability limits of a beam is derived. The dielectric function obtained in this way is employed to describe the transverse Schottky spectra with linear space charge as well. The difference between the action of space charge and impedances is highlighted. The setup and the results of an experiment performed in the heavy ion synchrotron SIS-18 at GSI to detect space-charge effects at different beam intensities are explicated. The measured transverse Schottky spectra and BTFs are compared with the linear space-charge model. The stability diagrams constructed from the BTFs are presented. The space-charge parameters evaluated from the Schottky and BTF measurements are compared with estimations based on measured beam parameters. The impact of collective effects on the Schottky and BTF diagnostics is also investigated through numerical simulations. For this purpose the self-field of beams with linear and non-linear transverse density-distributions is computed on a twodimensional grid. The noise of the random particle distribution causes fluctuations of the dipole moment of the beam which produce the Schottky spectrum. BTFs are simulated by exciting the beam with transverse kicks. The simulation results are used to verify the space-charge model. (orig.)

  17. Charge transfer and polarization for chloride ions bound in ClC transport proteins: natural bond orbital and energy decomposition analyses.

    Science.gov (United States)

    Church, Jonathan; Pezeshki, Soroosh; Davis, Christal; Lin, Hai

    2013-12-19

    ClC transport proteins show a distinct "broken-helix" architecture, in which certain α-helices are oriented with their N-terminal ends pointed toward the binding sites where the chloride ions are held extensively by the backbone amide nitrogen atoms from the helices. To understand the effectiveness of such binding structures, we carried out natural bond orbital analysis and energy decomposition analysis employing truncated active-site model systems for the bound chloride ions along the translocation pore of the EcClC proteins. Our results indicated that the chloride ions are stabilized in such a binding environment by electrostatic, polarization, and charge-transfer interactions with the backbone and a few side chains. Up to ~25% of the formal charges of the chloride ions were found smeared out to the surroundings primarily via charge transfer from the chloride's lone pair n(Cl) orbitals to the protein's antibonding σ*(N-H) or σ*(O-H) orbitals; those σ* orbitals are localized at the polar N-H and O-H bonds in the chloride's first solvation shells formed by the backbone amide groups and the side chains of residues Ser107, Arg147, Glu148, and Tyr445. Polarizations by the chloride ions were dominated by the redistribution of charge densities among the π orbitals and lone pair orbitals of the protein atoms, in particular the atoms of the backbone peptide links and of the side chains of Arg147, Glu148, and Tyr445. The substantial amounts of electron density involved in charge transfer and in polarization were consistent with the large energetic contributions by the two processes revealed by the energy decomposition analysis. The significant polarization and charge-transfer effects may have impacts on the mechanisms and dynamics of the chloride transport by the ClC proteins.

  18. A Priori Intrinsic PTM Size Parameters for Predicting the Ion Mobilities of Modified Peptides

    Science.gov (United States)

    Kaszycki, Julia L.; Shvartsburg, Alexandre A.

    2017-02-01

    The rising profile of ion mobility spectrometry (IMS) in proteomics has driven the efforts to predict peptide cross-sections. In the simplest approach, these are derived by adding the contributions of all amino acid residues and post-translational modifications (PTMs) defined by their intrinsic size parameters (ISPs). We show that the ISPs for PTMs can be calculated from properties of constituent atoms, and introduce the "impact scores" that govern the shift of cross-sections from the central mass-dependent trend for unmodified peptides. The ISPs and scores tabulated for 100 more common PTMs enable predicting the domains for modified peptides in the IMS/MS space that would guide subproteome investigations.

  19. Effect of Negatively Charged Ions on the Formation of Microarc Oxidation Coating on 2024 Aluminium Alloy

    Institute of Scientific and Technical Information of China (English)

    Wei Yang; Bailing Jiang; Aiying Wang; Huiying Shi

    2012-01-01

    The present study deals with the effect of negatively charged ions on the ceramic coating formation on 2024 aluminium alloy during microarc oxidation (MAO) process. On the basis of the experimental results, two steps (the formation of an incipient film without arc presence and the growth of a ceramic coating with arc discharge) of MAO process have been observed. For comparison, four different negatively charged ions studied. It is proved that negatively charged ions strongly participated in the formation of an incipient film with high impedance value at the first step. The growth of ceramic coating depends on the combination between AI of the substrate and O from the electrolyte, and the negatively charged ions are little consumed. As an anodic oxide coating is prepared on the sample surface instead of the incipient film, the first step occurs easily and the growth of ceramic coating is accelerated. Furthermore, the mechanism of negatively charged ions in the formation of the MAO coating has been proposed.

  20. Interaction of singly and multiply charged ions with a lithium-fluoride surface

    CERN Document Server

    Wirtz, L

    2001-01-01

    Charge transfer between slow ions and an ionic crystal surface still poses a considerable challenge to theory due to the intrinsic many-body character of the system. For the neutralization of multiply charged ions in front of metal surfaces, the Classical Over the Barrier (COB) model is a widely used tool. We present an extension of this model to ionic crystal surfaces where the localization of valence electrons at the anion sites and the lack of cylindrical symmetry of the ion-surface system impede a simple analytical estimate of electron transfer rates. We use a classical trajectory Monte Carlo approach to calculate electron transfer rates for different charge states of the projectile ion. With these rates we perform a Monte Carlo simulation of the neutralization of slow Ne10+ ions in vertical incidence on an LiF surface. Capture of one or several electrons may lead to a local positive charge up of the surface. The projectile dynamics depends on the balance between the repulsion due to this charge and the a...

  1. Dielectronic recombination measurements of highly-charged heliumlike and neonlike ions using an electron beam ion trap

    Energy Technology Data Exchange (ETDEWEB)

    Schneider, M.B.; Knapp, D.A.; Beiersdorfer, P.; Chen, M.H.; Scofield, J.H.; Bennett, C.L.; DeWitt, D.R.; Henderson, J.R.; Lee, P.; Marrs, R.E.; Schneider, D. (Lawrence Livermore National Lab., CA (United States)); Levine, M.A. (Lawrence Berkeley Lab., CA (United States))

    1991-01-01

    The electron beam ion trap (EBIT) at LLNL is a unique device designed to measure the interactions of electrons with highly-charged ions. We describe three methods used at EBIT to directly measure the dielectronic recombination (DR) process: the intensity of the stabilizing x-rays is measured as a function of electron beam energy; the ions remaining in a particular ionization state are counted after the electron beam has been held at a fixed electron energy for a fixed time; and high-resolution spectroscopy is used to resolve individual DR satellite lines. In our discussions, we concentrate on the KLL resonances of the heliumlike target ions (V{sup 21+} to Ba{sup 54+}), and the LMM resonances of the neonlike target ions (Xe{sup 44+} to Th{sup 80+}). 12 refs., 8 figs.

  2. High temperature electron beam ion source for the production of single charge ions of most elements of the Periodic Table

    CERN Document Server

    Panteleev, V N; Barzakh, A E; Fedorov, D V; Ivanov, V S; Moroz, F V; Orlov, S Y; Seliverstov, D M; Stroe, L; Tecchio, L B; Volkov, Y M

    2003-01-01

    A new type of a high temperature electron beam ion source (HTEBIS) with a working temperature up to 2500 deg. C was developed for production of single charge ions of practically all elements. Off-line tests and on-line experiments making use of the developed ion source coupled with uranium carbide targets of different density, have been carried out. The ionization efficiency measured for stable atoms of many elements varied in the interval of 1-6%. Using the HTEBIS, the yields and on-line production efficiency of neutron rich isotopes of Mn, Fe, Co, Cu, Rh, Pd, Ag, Cd, In, Sn and isotopes of heavy elements Pb, Bi, Po and some others have been determined. The revealed confinement effect of the ions produced in the narrow electron beam inside a hot ion source cavity has been discussed.

  3. Ion distributions at charged aqueous surfaces: Synchrotron X-ray scattering studies

    Energy Technology Data Exchange (ETDEWEB)

    Bu, Wei [Iowa State Univ., Ames, IA (United States)

    2009-01-01

    Surface sensitive synchrotron X-ray scattering studies were performed to obtain the distribution of monovalent ions next to a highly charged interface at room temperature. To control surface charge density, lipids, dihexadecyl hydrogen-phosphate (DHDP) and dimysteroyl phosphatidic acid (DMPA), were spread as monolayer materials at the air/water interface, containing CsI at various concentrations. Five decades in bulk concentrations (CsI) are investigated, demonstrating that the interfacial distribution is strongly dependent on bulk concentration. We show that this is due to the strong binding constant of hydronium H3O+ to the phosphate group, leading to proton-transfer back to the phosphate group and to a reduced surface charge. Using anomalous reflectivity off and at the L3 Cs+ resonance, we provide spatial counterion (Cs+) distributions next to the negatively charged interfaces. The experimental ion distributions are in excellent agreement with a renormalized surface charge Poisson-Boltzmann theory for monovalent ions without fitting parameters or additional assumptions. Energy Scans at four fixed momentum transfers under specular reflectivity conditions near the Cs+ L3 resonance were conducted on 10-3 M CsI with DHDP monolayer materials on the surface. The energy scans exhibit a periodic dependence on photon momentum transfer. The ion distributions obtained from the analysis are in excellent agreement with those obtained from anomalous reflectivity measurements, providing further confirmation to the validity of the renormalized surface charge Poisson-Boltzmann theory for monovalent ions. Moreover, the dispersion corrections f0 and f00 for Cs+ around L3 resonance, revealing the local environment of a Cs+ ion in the solution at the interface, were extracted simultaneously with output of ion distributions.

  4. Study on the ECR Ion Source and Application Technology of the Charged Particle Beam

    Energy Technology Data Exchange (ETDEWEB)

    Oh, B. H.; Lee, K. W.; Jin, J. T.; and others

    2012-12-15

    Recently, Korea has launched the world's top class heavy ion accelerator project, and for the machine it is necessary to develop related physic and technology for the high charge state beam including a 28 GHz superconducting ECR ion source. This study is prepared to support this activity including transport of TRIAC(Tokai Radioactive Accelerator Complex) and development of ECR ion source technology. TRIAC, which was developed by KEK Japan, was a one of a heavy ion accelerator. This work is especially necessary to support the originality of the experiments with the heavy ion accelerator in the future in Korea. New accelerator DIAC will be used to support Korea Rare Isotope Accelerator project, and also will be applied to other heavy ion beam physics and engineering research. Based on the conceptual design results of the 28 GHz superconducting ECR ion source, an engineering design and construction will be started from next fiscal year.

  5. Charge transfer to ground-state ions produces free electrons

    Science.gov (United States)

    You, D.; Fukuzawa, H.; Sakakibara, Y.; Takanashi, T.; Ito, Y.; Maliyar, G. G.; Motomura, K.; Nagaya, K.; Nishiyama, T.; Asa, K.; Sato, Y.; Saito, N.; Oura, M.; Schöffler, M.; Kastirke, G.; Hergenhahn, U.; Stumpf, V.; Gokhberg, K.; Kuleff, A. I.; Cederbaum, L. S.; Ueda, K.

    2017-01-01

    Inner-shell ionization of an isolated atom typically leads to Auger decay. In an environment, for example, a liquid or a van der Waals bonded system, this process will be modified, and becomes part of a complex cascade of relaxation steps. Understanding these steps is important, as they determine the production of slow electrons and singly charged radicals, the most abundant products in radiation chemistry. In this communication, we present experimental evidence for a so-far unobserved, but potentially very important step in such relaxation cascades: Multiply charged ionic states after Auger decay may partially be neutralized by electron transfer, simultaneously evoking the creation of a low-energy free electron (electron transfer-mediated decay). This process is effective even after Auger decay into the dicationic ground state. In our experiment, we observe the decay of Ne2+ produced after Ne 1s photoionization in Ne-Kr mixed clusters.

  6. How accurate is Poisson-Boltzmann theory for monovalent ions near highly charged interfaces?

    Science.gov (United States)

    Bu, Wei; Vaknin, David; Travesset, Alex

    2006-06-20

    Surface sensitive synchrotron X-ray scattering studies were performed to obtain the distribution of monovalent ions next to a highly charged interface. A lipid phosphate (dihexadecyl hydrogen-phosphate) was spread as a monolayer at the air-water interface to control surface charge density. Using anomalous reflectivity off and at the L3 Cs+ resonance, we provide spatial counterion (Cs+) distributions next to the negatively charged interfaces. Five decades in bulk concentrations are investigated, demonstrating that the interfacial distribution is strongly dependent on bulk concentration. We show that this is due to the strong binding constant of hydronium H3O+ to the phosphate group, leading to proton-transfer back to the phosphate group and to a reduced surface charge. The increase of Cs+ concentration modifies the contact value potential, thereby causing proton release. This process effectively modifies surface charge density and enables exploration of ion distributions as a function of effective surface charge-density. The experimentally obtained ion distributions are compared to distributions calculated by Poisson-Boltzmann theory accounting for the variation of surface charge density due to proton release and binding. We also discuss the accuracy of our experimental results in discriminating possible deviations from Poisson-Boltzmann theory.

  7. Efficiently photo-charging lithium-ion battery by perovskite solar cell.

    Science.gov (United States)

    Xu, Jiantie; Chen, Yonghua; Dai, Liming

    2015-08-27

    Electric vehicles using lithium-ion battery pack(s) for propulsion have recently attracted a great deal of interest. The large-scale practical application of battery electric vehicles may not be realized unless lithium-ion batteries with self-charging suppliers will be developed. Solar cells offer an attractive option for directly photo-charging lithium-ion batteries. Here we demonstrate the use of perovskite solar cell packs with four single CH3NH3PbI3 based solar cells connected in series for directly photo-charging lithium-ion batteries assembled with a LiFePO4 cathode and a Li4Ti5O12 anode. Our device shows a high overall photo-electric conversion and storage efficiency of 7.80% and excellent cycling stability, which outperforms other reported lithium-ion batteries, lithium-air batteries, flow batteries and super-capacitors integrated with a photo-charging component. The newly developed self-chargeable units based on integrated perovskite solar cells and lithium-ion batteries hold promise for various potential applications.

  8. Efficiently photo-charging lithium-ion battery by perovskite solar cell

    Science.gov (United States)

    Xu, Jiantie; Chen, Yonghua; Dai, Liming

    2015-01-01

    Electric vehicles using lithium-ion battery pack(s) for propulsion have recently attracted a great deal of interest. The large-scale practical application of battery electric vehicles may not be realized unless lithium-ion batteries with self-charging suppliers will be developed. Solar cells offer an attractive option for directly photo-charging lithium-ion batteries. Here we demonstrate the use of perovskite solar cell packs with four single CH3NH3PbI3 based solar cells connected in series for directly photo-charging lithium-ion batteries assembled with a LiFePO4 cathode and a Li4Ti5O12 anode. Our device shows a high overall photo-electric conversion and storage efficiency of 7.80% and excellent cycling stability, which outperforms other reported lithium-ion batteries, lithium–air batteries, flow batteries and super-capacitors integrated with a photo-charging component. The newly developed self-chargeable units based on integrated perovskite solar cells and lithium-ion batteries hold promise for various potential applications. PMID:26311589

  9. Strongly Enhanced Effects of Lorentz-Symmetry Violation in Yb$^+$ and Highly Charged Ions

    CERN Document Server

    Safronova, M S

    2016-01-01

    A Lorentz-symmetry test with Ca$^+$ ions demonstrated the potential of using quantum information inspired technology for tests of fundamental physics. A systematic study of atomic-system sensitivities to Lorentz violation identified the ytterbium ion as an ideal system with high sensitivity as well as excellent experimental controllability. A test of Lorentz-violating physics in the electron-photon sector with Yb$^+$ ions has the potential to reach levels of 10$^{-23}$, five orders of magnitude more sensitive than the current best bounds. Similar sensitivities may be also reached with highly charged ions.

  10. Shot-to-shot reproducibility in the emission of fast highly charged metal ions from a laser ion source.

    Science.gov (United States)

    Krása, J; Velyhan, A; Margarone, D; Krouský, E; Krouský, L; Jungwirth, K; Rohlena, K; Ullschmied, J; Parys, P; Ryć, L; Wołowski, J

    2012-02-01

    The generation of fast highly charged metal ions with the use of the sub-nanosecond Prague Asterix Laser System, operated at a fundamental wavelength of 1315 nm, is reported. Particular attention is paid to shot-to-shot reproducibility in the ion emission. Au and Pd targets were exposed to intensities up to 5 × 10(16) W∕cm(2). Above the laser intensity threshold of ∼3 × 10(14) W∕cm(2) the plasma is generated in a form of irregular bursts. The maximum energy of protons constituting the leading edge of the fastest burst reaches a value up to 1 MeV. The fast ions in the following bursts have energy gradually decreasing with the increasing burst number, namely, from a value of about 0.5 MeV∕charge regardless of the atomic number and mass of the ionized species.

  11. Proton Mobility in b2 Ion Formation and Fragmentation Reactions of Histidine-Containing Peptides

    Science.gov (United States)

    Nelson, Carissa R.; Abutokaikah, Maha T.; Harrison, Alex G.; Bythell, Benjamin J.

    2016-03-01

    A detailed energy-resolved study of the fragmentation reactions of protonated histidine-containing peptides and their b2 ions has been undertaken. Density functional theory calculations were utilized to predict how the fragmentation reactions occur so that we might discern why the mass spectra demonstrated particular energy dependencies. We compare our results to the current literature and to synthetic b2 ion standards. We show that the position of the His residue does affect the identity of the subsequent b2 ion (diketopiperazine versus oxazolone versus lactam) and that energy-resolved CID can distinguish these isomeric products based on their fragmentation energetics. The histidine side chain facilitates every major transformation except trans-cis isomerization of the first amide bond, a necessary prerequisite to diketopiperazine b2 ion formation. Despite this lack of catalyzation, trans-cis isomerization is predicted to be facile. Concomitantly, the subsequent amide bond cleavage reaction is rate-limiting.

  12. A compact electron beam ion source with integrated Wien filter providing mass and charge state separated beams of highly charged ions.

    Science.gov (United States)

    Schmidt, M; Peng, H; Zschornack, G; Sykora, S

    2009-06-01

    A Wien filter was designed for and tested with a room temperature electron beam ion source (EBIS). Xenon charge state spectra up to the charge state Xe46+ were resolved as well as the isotopes of krypton using apertures of different sizes. The complete setup consisting of an EBIS and a Wien filter has a length of less than 1 m substituting a complete classical beamline setup. The Wien filter is equipped with removable permanent magnets. Hence total beam current measurements are possible via simple removal of the permanent magnets. In dependence on the needs of resolution a weak (0.2 T) or a strong (0.5 T) magnets setup can be used. In this paper the principle of operation and the design of the Wien filter meeting the requirements of an EBIS are briefly discussed. The first ion beam extraction and separation experiments with a Dresden EBIS are presented.

  13. Binding of Cu(II) ions to peptides studied by fluorescence spectroscopy and isothermal titration calorimetry.

    Science.gov (United States)

    Makowska, Joanna; Żamojć, Krzysztof; Wyrzykowski, Dariusz; Uber, Dorota; Wierzbicka, Małgorzata; Wiczk, Wiesław; Chmurzyński, Lech

    2016-01-15

    Steady-state and time-resolved fluorescence quenching measurements supported by Isothermal Titration Calorimetry (ITC) were used to study the interactions of Cu(2+) with four peptides. Two of them were taken from the N-terminal part of the FBP28 protein (formin binding protein) WW domain: Tyr-Lys-Thr-Ala-Asp-Gly-Lys-Thr-Tyr-NH2 (D9) and its mutant Tyr-Lys-Thr-Ala-Asn-Gly-Lys-Thr-Tyr-NH2 (D9_M) as well as two mutated peptides from the B3 domain of the immunoglobulin binding protein G derived from Streptococcus: Asp-Val-Ala-Thr-Tyr-Thr-NH2 (J1) and Glu-Val-Ala-Thr-Tyr-Thr-NH2 (J2). The measurements were carried out at 298.15K in 20mM 2-(N-morpholino)ethanesulfonic acid (MES) buffer solution with a pH of 6. The fluorescence of all peptides was quenched by Cu(2+) ions. The stoichiometry, conditional stability constants and thermodynamic parameters for the interactions of the Cu(2+) ions with D9 and D9_M were determined from the calorimetric data. The values of the conditional stability constants were additionally determined from fluorescence quenching measurements and compared with those obtained from calorimetric studies. There was a good correlation between data obtained from the two techniques. On the other hand, the studies revealed that J1 and J2 do not exhibit an affinity towards metal ions. The obtained results prove that fluorescence quenching experiments may be successfully used in order to determine stability constants of complexes with fluorescent ligands. Finally, based on the obtained results, the coordinating properties of the peptides towards the Cu(2+) ions are discussed.

  14. Particles inside electrolytes with ion-specific interactions, their effective charge distributions, and effective interactions

    Science.gov (United States)

    Ding, Mingnan; Liang, Yihao; Xing, Xiangjun

    2016-10-01

    In this work, we explore the statistical physics of colloidal particles that interact with electrolytes via ion-specific interactions. Firstly we study particles interacting weakly with electrolyte using linear response theory. We find that the mean potential around a particle is linearly determined by the effective charge distribution of the particle, which depends both on the bare charge distribution and on ion-specific interactions. We also discuss the effective interaction between two such particles and show that, in the far field regime, it is bilinear in the effective charge distributions of two particles. We subsequently generalize the above results to the more complicated case where particles interact strongly with the electrolyte. Our results indicate that in order to understand the statistical physics of non-dilute electrolytes, both ion-specific interactions and ionic correlations have to be addressed in a single unified and consistent framework. Project supported by the National Natural Science Foundation of China (Grant Nos. 11174196 and 91130012).

  15. Electroweak Decay Studies of Highly Charged Radioactive Ions with TITAN at TRIUMF

    CERN Document Server

    Leach, K G; Klawitter, R; Leistenschneider, E; Lennarz, A; Brunner, T; Frekers, D; Andreiou, C; Kwiatkowski, A A; Dilling, J

    2016-01-01

    Several modes of electroweak radioactive decay require an interaction between the nucleus and bound electrons within the constituent atom. Thus, the probabilities of the respective decays are not only influenced by the structure of the initial and final states in the nucleus, but can also depend strongly on the atomic charge. Conditions suitable for the partial or complete ionization of these rare isotopes occur naturally in hot, dense astrophysical environments, but can also be artificially generated in the laboratory to selectively block certain radioactive decay modes. Direct experimental studies on such scenarios are extremely difficult due to the laboratory conditions required to generate and store radioactive ions at high charge states. A new electron-beam ion trap (EBIT) decay setup with the TITAN experiment at TRIUMF has successfully demonstrated such techniques for performing spectroscopy on the radioactive decay of highly charged ions.

  16. Space charge compensation in the Linac4 low energy beam transport line with negative hydrogen ions.

    Science.gov (United States)

    Valerio-Lizarraga, Cristhian A; Lallement, Jean-Baptiste; Leon-Monzon, Ildefonso; Lettry, Jacques; Midttun, Øystein; Scrivens, Richard

    2014-02-01

    The space charge effect of low energy, unbunched ion beams can be compensated by the trapping of ions or electrons into the beam potential. This has been studied for the 45 keV negative hydrogen ion beam in the CERN Linac4 Low Energy Beam Transport using the package IBSimu [T. Kalvas et al., Rev. Sci. Instrum. 81, 02B703 (2010)], which allows the space charge calculation of the particle trajectories. The results of the beam simulations will be compared to emittance measurements of an H(-) beam at the CERN Linac4 3 MeV test stand, where the injection of hydrogen gas directly into the beam transport region has been used to modify the space charge compensation degree.

  17. Space charge compensation in the Linac4 low energy beam transport line with negative hydrogen ions

    Energy Technology Data Exchange (ETDEWEB)

    Valerio-Lizarraga, Cristhian A., E-mail: cristhian.alfonso.valerio.lizarraga@cern.ch [CERN, Geneva (Switzerland); Departamento de Investigación en Física, Universidad de Sonora, Hermosillo (Mexico); Lallement, Jean-Baptiste; Lettry, Jacques; Scrivens, Richard [CERN, Geneva (Switzerland); Leon-Monzon, Ildefonso [Facultad de Ciencias Fisico-Matematicas, Universidad Autónoma de Sinaloa, Culiacan (Mexico); Midttun, Øystein [CERN, Geneva (Switzerland); University of Oslo, Oslo (Norway)

    2014-02-15

    The space charge effect of low energy, unbunched ion beams can be compensated by the trapping of ions or electrons into the beam potential. This has been studied for the 45 keV negative hydrogen ion beam in the CERN Linac4 Low Energy Beam Transport using the package IBSimu [T. Kalvas et al., Rev. Sci. Instrum. 81, 02B703 (2010)], which allows the space charge calculation of the particle trajectories. The results of the beam simulations will be compared to emittance measurements of an H{sup −} beam at the CERN Linac4 3 MeV test stand, where the injection of hydrogen gas directly into the beam transport region has been used to modify the space charge compensation degree.

  18. Proceedings of the workshop on opportunities for atomic physics using slow, highly-charged ions

    Energy Technology Data Exchange (ETDEWEB)

    1987-01-01

    The study of atomic physics with highly-charged ions is an area of intense activity at the present time because of a convergence of theoretical interest and advances in experimental techniques. The purpose of the Argonne ''Workshop on Opportunities for Atomic Physics Using Slow, Highly-Charged Ions'' was to bring together atomic, nuclear, and accelerator physicists in order to identify what new facilities would be most useful for the atomic physics community. The program included discussion of existing once-through machines, advanced ion sources, recoil ion techniques, ion traps, and cooler rings. One of the topics of the Workshop was to discuss possible improvement to the ANL Tandem-Linac facility (ATLAS) to enhance the capability for slowing down ions after they are stripped to a high-charge state (the Accel/Decel technique). Another topic was the opportunity for atomic physics provided by the ECR ion source which is being built for the Uranium Upgrade of ATLAS. 18 analytics were prepared for the individual papers in this volume.

  19. Trapped-ion probing of light-induced charging effects on dielectrics

    Energy Technology Data Exchange (ETDEWEB)

    Harlander, M; Brownnutt, M; Haensel, W; Blatt, R, E-mail: max.harlander@uibk.ac.a [Institut fuer Experimentalphysik, Universitaet Innsbruck, Technikerstrasse 25, A-6020 Innsbruck (Austria)

    2010-09-15

    We use a string of confined {sup 40}Ca{sup +} ions to measure perturbations to a trapping potential which are caused by the light-induced charging of an antireflection-coated window and of insulating patches on the ion-trap electrodes. The electric fields induced at the ions' position are characterized as a function of distance to the dielectric and as a function of the incident optical power and wavelength. The measurement of the ion-string position is sensitive to as few as 40 elementary charges per {radical}(Hz) on the dielectric at distances of the order of millimetres, and perturbations are observed for illuminations with light of wavelengths as large as 729 nm. This has important implications for the future of miniaturized ion-trap experiments, notably with regard to the choice of electrode material and the optics that must be integrated in the vicinity of the ion. The method presented here can be readily applied to the investigation of charging effects beyond the context of ion-trap experiments.

  20. Opposite counter-ion effects on condensed bundles of highly charged supramolecular nanotubes in water.

    Science.gov (United States)

    Wei, Shenghui; Chen, Mingming; Wei, Chengsha; Huang, Ningdong; Li, Liangbin

    2016-07-20

    Although ion specificity in aqueous solutions is well known, its manifestation in unconventional strong electrostatic interactions remains implicit. Herein, the ionic effects in dense packing of highly charged polyelectrolytes are investigated in supramolecular nanotube prototypes. Distinctive behaviors of the orthorhombic arrays composed of supramolecular nanotubes in various aqueous solutions were observed by Small Angle X-ray Scattering (SAXS), depending on the counter-ions' size and affiliation to the surface -COO(-) groups. Bigger tetra-alkyl ammonium (TAA(+)) cations weakly bonding to -COO(-) will compress the orthorhombic arrays, while expansion is induced by smaller alkaline metal (M(+)) ions with strong affiliation to -COO(-). Careful analysis of the changes in the SAXS peaks with different counter/co-ion combinations indicates dissimilar mechanisms underlying the two explicit types of ionic effects. The pH measurements are in line with the ion specificity by SAXS and reveal the strong electrostatic character of the system. It is proposed that the small distances between the charged surfaces, in addition to the selective adsorption of counter-ions by the surface charge, bring out the observed distinctive ionic effects. Our results manifest the diverse mechanisms and critical roles of counter-ion effects in strong electrostatic interactions.

  1. Ionization efficiency studies with charge breeder and conventional electron cyclotron resonance ion source

    Energy Technology Data Exchange (ETDEWEB)

    Koivisto, H., E-mail: hannu.koivisto@phys.jyu.fi; Tarvainen, O.; Toivanen, V.; Komppula, J.; Kronholm, R. [Department of Physics, University of Jyväskylä (JYFL), Jyväskylä (Finland); Lamy, T.; Angot, J. [LPSC, Université Joseph Fourier Grenoble 1, Grenoble INP, 53 rue des martyrs, 38026 Grenoble Cedex (France); Delahaye, P.; Maunoury, L. [GANIL, CEA/DSM-CNRS/IN2P3, Caen Cedex 05 (France); Galata, A. [INFN-Laboratori Nazionali di Legnaro, Legnaro, Padova (Italy); Patti, G. [INFN-Laboratori Nazionali del Sud, Catania (Italy); Standylo, L.; Steczkiewicz, O.; Choinski, J. [Heavy Ion Laboratory, University of Warsaw, Warsaw (Poland)

    2014-02-15

    Radioactive Ion Beams play an increasingly important role in several European research facility programs such as SPES, SPIRAL1 Upgrade, and SPIRAL2, but even more for those such as EURISOL. Although remarkable advances of ECRIS charge breeders (CBs) have been achieved, further studies are needed to gain insight on the physics of the charge breeding process. The fundamental plasma processes of charge breeders are studied in the frame of the European collaboration project, EMILIE, for optimizing the charge breeding. Important information on the charge breeding can be obtained by conducting similar experiments using the gas mixing and 2-frequency heating techniques with a conventional JYFL 14 GHz ECRIS and the LPSC-PHOENIX charge breeder. The first experiments were carried out with noble gases and they revealed, for example, that the effects of the gas mixing and 2-frequency heating on the production of high charge states appear to be additive for the conventional ECRIS. The results also indicate that at least in the case of noble gases the differences between the conventional ECRIS and the charge breeder cause only minor impact on the production efficiency of ion beams.

  2. Homogenization of the Poisson-Nernst-Planck Equations for Ion Transport in Charged Porous Media

    CERN Document Server

    Schmuck, Markus

    2012-01-01

    Effective Poisson-Nernst-Planck (PNP) equations are derived for macroscopic ion transport in charged porous media. Homogenization analysis is performed for a two-component pe- riodic composite consisting of a dilute electrolyte continuum (described by standard PNP equations) and a continuous dielectric matrix, which is impermeable to the ions and carries a given surface charge. Three new features arise in the upscaled equations: (i) the effective ionic diffusivities and mobilities become tensors, related to the microstructure; (ii) the effective permittivity is also a tensor, depending on the electrolyte/matrix permittivity ratio and the ratio of the Debye screening length to mean pore size; and (iii) the surface charge per volume appears as a continuous "background charge density". The coeffcient tensors in the macroscopic PNP equations can be calculated from periodic reference cell problem, and several examples are considered. For an insulating solid matrix, all gradients are corrected by a single tortuosit...

  3. Collisionless damping of dust-acoustic waves in a charge varying dusty plasma with nonextensive ions

    Energy Technology Data Exchange (ETDEWEB)

    Amour, Rabia; Tribeche, Mouloud [Faculty of Physics, Theoretical Physics Laboratory (TPL), Plasma Physics Group (PPG), University of Bab-Ezzouar, USTHB, B.P. 32, El Alia, Algiers 16111 (Algeria)

    2014-12-15

    The charge variation induced nonlinear dust-acoustic wave damping in a charge varying dusty plasma with nonextensive ions is considered. It is shown that the collisionless damping due to dust charge fluctuation causes the nonlinear dust acoustic wave propagation to be described by a damped Korteweg-de Vries (dK-dV) equation the coefficients of which depend sensitively on the nonextensive parameter q. The damping term, solely due to the dust charge variation, is affected by the ion nonextensivity. For the sake of completeness, the possible effects of nonextensivity and collisionless damping on weakly nonlinear wave packets described by the dK-dV equation are succinctly outlined by deriving a nonlinear Schrödinger-like equation with a complex nonlinear coefficient.

  4. Spectroscopic investigation of the charge dynamics of heavy ions penetrating solid and gaseous targets

    Energy Technology Data Exchange (ETDEWEB)

    Korostiy, S.

    2007-01-15

    This thesis presents the study of the slowing down process of fast heavy ions inside matter. In the framework of this research, the influence of the target density on the stopping process is investigated. Experiments on the interaction of {sup 48}Ca{sup 6+}-{sup 48}Ca{sup 10+} and {sup 26}Mg{sup 5+} ion beams with initial energies of 11.4 MeV/u and 5.9 MeV/u with solid and gaseous targets have been carried out. A novel diagnostic method, X-ray spectroscopy of K-shell projectile radiation, is used to determine the ion charge state in relation to its velocity during the penetration of fast heavy ions inside the stopping material. A spatially resolved analysis of the projectile and target radiation in solids is achieved for the first time. The application of low-density silica aerogels as stopping media provided a stretching of the ion stopping length by 20 - 100 times in comparison with solid quartz. The Doppler Effect observed on the projectile K-shell spectra is used to calculate the ion velocity in dependence on the ion penetration depth in the target material. A comparative analysis of K{sub {alpha}} spectra of fast heavy ions is performed in solid (silica aerogels) and gaseous targets (Ar and Ne gases) at the same ion energy. It is shown that the dominant role of collisions in dense matter leads to an increase of the effective ionization cross section at high ion velocity and suppression of the electron capture to the projectile ion excited states at low ion velocity. As a result, an increase of the ion charge state in dense matter is observed. The experimentally detected effects are interpreted with numerical calculations of the projectile population kinetics, which are in good agreement with measurements. (orig.)

  5. Light charged particle emission in heavy-ion reactions – What have we learnt?

    Indian Academy of Sciences (India)

    S Kailas

    2001-07-01

    Light charged particles emitted in heavy-ion induced reactions, their spectra and angular distributions measured over a range of energies, carry the signature of the underlying reaction mechanisms. Analysis of data of light charged particles, both inclusive and exclusive measured in coincidence with gamma rays, fission products, evaporation residues have yielded interesting results which bring out the influence of nuclear structure, nuclear mean field and dynamics on the emission of these particles.

  6. Recoil ion charge state distribution following the beta(sup +) decay of {sup 21}Na

    Energy Technology Data Exchange (ETDEWEB)

    Scielzo, Nicholas D.; Freedman, Stuart J.; Fujikawa, Brian K.; Vetter, Paul A.

    2003-01-03

    The charge state distribution following the positron decay of 21Na has been measured, with a larger than expected fraction of the daughter 21Ne in positive charge states. No dependence on either the positron or recoil nucleus energy is observed. The data is compared to a simple model based on the sudden approximation. Calculations suggest a small but important contribution from recoil ionization has important consequences for precision beta decay correlation experiments detecting recoil ions.

  7. Ion selection of charge-modified large nanopores in a graphene sheet

    Science.gov (United States)

    Zhao, Shijun; Xue, Jianming; Kang, Wei

    2013-09-01

    Water desalination becomes an increasingly important approach for clean water supply to meet the rapidly growing demand of population boost, industrialization, and urbanization. The main challenge in current desalination technologies lies in the reduction of energy consumption and economic costs. Here, we propose to use charged nanopores drilled in a graphene sheet as ion exchange membranes to promote the efficiency and capacity of desalination systems. Using molecular dynamics simulations, we investigate the selective ion transport behavior of electric-field-driven KCl electrolyte solution through charge modified graphene nanopores. Our results reveal that the presence of negative charges at the edge of graphene nanopore can remarkably impede the passage of Cl- while enhance the transport of K+, which is an indication of ion selectivity for electrolytes. We further demonstrate that this selectivity is dependent on the pore size and total charge number assigned at the nanopore edge. By adjusting the nanopore diameter and electric charge on the graphene nanopore, a nearly complete rejection of Cl- can be realized. The electrical resistance of nanoporous graphene, which is a key parameter to evaluate the performance of ion exchange membranes, is found two orders of magnitude lower than commercially used membranes. Our results thus suggest that graphene nanopores are promising candidates to be used in electrodialysis technology for water desalinations with a high permselectivity.

  8. Charge Transfer Based Colorimetric Detection of Silver Ion

    Energy Technology Data Exchange (ETDEWEB)

    Han, Seung Choul; Kim, Kwang Seob; Choi, Soon Kyu; Oh, Jinho; Lee, Jae Wook [Dong-A Univ., Busan (Korea, Republic of)

    2014-05-15

    We have demonstrated the colorimetric chemosensor for detection of Ag{sup +} via formation of nanoparticles which is based on the intramolecular CT interaction between the electron-rich (2,6-dialkoxynaphthalene; Np) moiety and the electron-deficient (methyl viologen; MV{sup 2+}) moiety of a single sensor molecule. Under irradiation of light, Ag{sup +} was reduced to very small silver nanoparticle by CT interaction in the presence of OEGs as flexible recognition moiety of Ag{sup +} and stabilizer for Ag nanoparticles, thus Ag nanoparticles resulted to reddish brown in the color change of sensor solution, gradually. Therefore, the charge-transfer interaction between an electron-deficient and an electron-rich units existing at a sensor molecule can be regarded as a new and efficient method to construct various colorimetric chemosensors. Donor.acceptor interactions or charge transfer (CT) interactions are an important class of non-covalent interactions and have been widely exploited in self-assembling systems. Beyond molecular chemistry, supramolecular chemistry aims at constituting highly complex, functional chemical systems from components held together by intermolecular forces. Chemosensors are the molecules of abiotic origin that bind selectively and reversibly with the analyte with concomitant change in one or more properties of the system. The recognition and signaling of ionic and neutral species of varying complexity is one of the most intensively studied areas of contemporary supramolecular chemistry.

  9. Theory of a stationary microwave discharge with multiply charged ions in an expanding gas jet

    Science.gov (United States)

    Shalashov, A. G.; Abramov, I. S.; Golubev, S. V.; Gospodchikov, E. D.

    2016-08-01

    The formation of a jet of a nonequilibrium multiply charged ion plasma is studied in the inhomogeneous gas jet. It is shown that the geometrical divergence of the jet restricts the maximum ion charge state and results in the spatial localization of the discharge. Stationary solutions corresponding to such regimes are constructed. The model proposed can be used to optimize modern experiments on generation of hard UV radiation due to the line emission of multiply ionized atoms in a gas jet heated by high-power millimeter and submillimeter radiation.

  10. Highly charged ion impact on uracil: Cross sections measurements and scaling

    Science.gov (United States)

    Agnihotri, A. N.; Kasthurirangan, S.; Champion, C.; Rivarola, R. D.; Tribedi, L. C.

    2014-04-01

    Absolute total ionization cross sections (TCS) of uracil in collisions with highly charge C, O and F ions are measured. The scaling properties of cross sections are obtained as a function of projectile charge state and energy. The measurements are compared with the CDW-EIS, CB1 and CTMC calculations. The absolute double differential cross sections (DDCS) of secondary electron emission from uracil in collisions with bare MeV energy C and O ions are also measured. Large enhancement in forward emission is observed.

  11. X-ray resonant photoexcitation: linewidths and energies of Kα transitions in highly charged Fe ions.

    Science.gov (United States)

    Rudolph, J K; Bernitt, S; Epp, S W; Steinbrügge, R; Beilmann, C; Brown, G V; Eberle, S; Graf, A; Harman, Z; Hell, N; Leutenegger, M; Müller, A; Schlage, K; Wille, H-C; Yavaş, H; Ullrich, J; Crespo López-Urrutia, J R

    2013-09-06

    Photoabsorption by and fluorescence of the Kα transitions in highly charged iron ions are essential mechanisms for x-ray radiation transfer in astrophysical environments. We study photoabsorption due to the main Kα transitions in highly charged iron ions from heliumlike to fluorinelike (Fe24+ to Fe17+) using monochromatic x rays around 6.6 keV at the PETRA III synchrotron photon source. Natural linewidths were determined with hitherto unattained accuracy. The observed transitions are of particular interest for the understanding of photoexcited plasmas found in x-ray binary stars and active galactic nuclei.

  12. Properties of cold ions produced by synchrotron radiation and by charged particle impact

    Science.gov (United States)

    Levin, J. C.; Biedermann, C.; Cederquist, H.; O, C.-S.; Short, R. T.; Sellin, I. A.

    1989-04-01

    Argon recoil ions produced by beams of 0.8 MeV/u Cl 5+ have been detected by time-of-flight (TOF) techniques in coincidence with the loss of from one to five projectile electrons. Recoil-ion energies have been determined to be more than an order of magnitude higher than those of highly charged ions produced by unmonochromatized synchrotron radiation. Charge-state distributions, however, show similarities, suggesting that loss of projectile electrons corresponds, in some cases, to inner-shell target ionization producing vacancy cascades. In an essential improvement to the usual multinomial description of ionization in the independent-electron-ejection model, we find the inclusion of Auger vacancy cascades significantly alters the description of the recoil ion spectra corresponding to the projectile-electron loss. These conclusions are consistent with impact parameters inferred from determination of mean recoil energy.

  13. Theoretical study of charge transfer dynamics in collisions of C6+ carbon ions with pyrimidine nucleobases

    Science.gov (United States)

    Bacchus-Montabonel, M. C.

    2012-07-01

    A theoretical approach of the charge transfer dynamics induced by collision of C6+ ions with biological targets has been performed in a wide collision energy range by means of ab-initio quantum chemistry molecular methods. The process has been investigated for the target series thymine, uracil and 5-halouracil corresponding to similar molecules with different substituent on carbon C5. Such a study may be related to hadrontherapy treatments by C6+carbon ions and may provide, in particular, information on the radio-sensitivity of the different bases with regard to ion-induced radiation damage. The results have been compared to a previous analysis concerning the collision of C4+ carbon ions with the same biomolecular targets and significant charge effects have been pointed out.

  14. Surface charging of thick porous water ice layers relevant for ion sputtering experiments

    Science.gov (United States)

    Galli, A.; Vorburger, A.; Pommerol, A.; Wurz, P.; Jost, B.; Poch, O.; Brouet, Y.; Tulej, M.; Thomas, N.

    2016-07-01

    We use a laboratory facility to study the sputtering properties of centimeter-thick porous water ice subjected to the bombardment of ions and electrons to better understand the formation of exospheres of the icy moons of Jupiter. Our ice samples are as similar as possible to the expected moon surfaces but surface charging of the samples during ion irradiation may distort the experimental results. We therefore monitor the time scales for charging and discharging of the samples when subjected to a beam of ions. These experiments allow us to derive an electric conductivity of deep porous ice layers. The results imply that electron irradiation and sputtering play a non-negligible role for certain plasma conditions at the icy moons of Jupiter. The observed ion sputtering yields from our ice samples are similar to previous experiments where compact ice films were sputtered off a micro-balance.

  15. Interaction of low-energy highly charged ions with matter; Wechselwirkung niederenergetischer hochgeladener Ionen mit Materie

    Energy Technology Data Exchange (ETDEWEB)

    Ginzel, Rainer

    2010-06-09

    The thesis presented herein deals with experimental studies of the interaction between highly charged ions and neutral matter at low collision energies. The energy range investigated is of great interest for the understanding of both charge exchange reactions between ions comprising the solar wind and various astrophysical gases, as well as the creation of near-surface nanostructures. Over the course of this thesis an experimental setup was constructed, capable of reducing the kinetic energy of incoming ions by two orders of magnitude and finally focussing the decelerated ion beam onto a solid or gaseous target. A coincidence method was employed for the simultaneous detection of photons emitted during the charge exchange process together with the corresponding projectile ions. In this manner, it was possible to separate reaction channels, whose superposition presumably propagated large uncertainties and systematic errors in previous measurements. This work has unveiled unexpectedly strong contributions of slow radiative decay channels and clear evidence of previously only postulated decay processes in charge exchange-induced X-ray spectra. (orig.)

  16. Cathode material comparison of thermal runaway behavior of Li-ion cells at different state of charges including over charge

    Science.gov (United States)

    Mendoza-Hernandez, Omar Samuel; Ishikawa, Hiroaki; Nishikawa, Yuuki; Maruyama, Yuki; Umeda, Minoru

    2015-04-01

    The analysis of Li-ion secondary cells under outstanding conditions, as overcharge and high temperatures, is important to determine thermal abuse characteristics of electroactive materials and precise risk assessments on Li-ion cells. In this work, the thermal runaway behavior of LiCoO2 and LiMn2O4 cathode materials were compared at different state of charges (SOCs), including overcharge, by carrying out accelerating rate calorimetry (ARC) measurements using 18650 Li-ion cells. Onset temperatures of self-heating reactions and thermal runaway behavior were identified, and by using these onset points thermal mapping plots were made. We were able to identify non-self-heating, self-heating and thermal runaway regions as a function of state of charge and temperature. The cell using LiMn2O4 cathode material was found to be more thermally stable than the cell using LiCoO2. In parallel with the ARC measurements, the electrochemical behavior of the cells was monitored by measuring the OCV and internal resistance of the cells. The electrochemical behavior of the cells showed a slightly dependency on SOC.

  17. Ultracold, radiative charge transfer in hybrid Yb ion - Rb atom traps

    CERN Document Server

    McLaughlin, B M; Lane, I C; McCann, J F

    2014-01-01

    Ultracold hybrid ion-atom traps offer the possibility of microscopic manipulation of quantum coherences in the gas using the ion as a probe. However, inelastic processes, particularly charge transfer can be a significant process of ion loss and has been measured experimentally for the Yb$^{+}$ ion immersed in a Rb vapour. We use first-principles quantum chemistry codes to obtain the potential energy curves and dipole moments for the lowest-lying energy states of this complex. Calculations for the radiative decay processes cross sections and rate coefficients are presented for the total decay processes. Comparing the semi-classical Langevin approximation with the quantum approach, we find it provides a very good estimate of the background at higher energies. The results demonstrate that radiative decay mechanisms are important over the energy and temperature region considered. In fact, the Langevin process of ion-atom collisions dominates cold ion-atom collisions. For spin dependent processes \\cite{kohl13} the...

  18. Resonant charge transfer in low-energy ion scattering: Information depth in the reionization regime.

    Science.gov (United States)

    Primetzhofer, D; Spitz, M; Taglauer, E; Bauer, P

    2011-11-01

    Time-Of-Flight Low-energy ion scattering (TOF-LEIS) experiments were performed for He(+) ions scattered from Cu(100) and Cu(0.5)Au(0.5)(100). Probabilities for resonant neutralization and reionization in close collisions were deduced in a wide energy range. To learn about the information depth in LEIS, in a next step ion spectra were analyzed for polycrystalline Cu samples. The relative yield of backscattered projectiles, which have undergone distinct charge exchange processes, was calculated. Results indicate a strong contribution to the ion yield that origins from particles reionized in a close collision in deeper layers when experiments are performed at energies where reionization is prominent. The surface sensitivity of the ion signal at different energies is quantified. Based on these results, the total ion spectrum was quantitatively modelled by two consistent, but different approaches.

  19. Ion mobility-mass spectrometry of phosphorylase B ions generated with supercharging reagents but in charge-reducing buffer.

    Science.gov (United States)

    Hogan, Christopher J; Ogorzalek Loo, Rachel R; Loo, Joseph A; de la Mora, Juan Fernandez

    2010-11-01

    We investigate whether "supercharging" reagents able to shift the charge state distributions (CSDs) of electrosprayed protein ions upward also influence gas-phase protein structure. A differential mobility analyzer and a mass spectrometer are combined in series (DMA-MS) to measure the mass and mobility of monomer and multimeric phosphorylase B ions (monomer molecular weight ∼97 kDa) in atmospheric pressure air. Proteins are electrosprayed from charge-reducing triethylammonium formate in water (pH = 6.8) with and without the addition of the supercharging reagent tetramethylene sulfone (sulfolane). Because the DMA measures ion mobility prior to collisional heating or declustering, it probes the structure of supercharged protein ions immediately following solvent (water) evaporation. As in prior studies, the addition of sulfolane is found to drastically increase both the mean and maximum charge state of phosphorylase B ions. Ions from all protein n-mers were found to yield mobilities that, for a given charge state, were ∼6-10% higher in the absence of sulfolane. We find that the mobility decrease which arises with sulfolane is substantially smaller than that typically observed for folded-to-unfolded transitions in protein ions (where a ∼60% decrease in mobility is typical), suggesting that supercharging reagents do not cause structural protein modifications in solution as large as noted recently by Williams and colleagues [E. R. Williams et al., J. Am. Soc. Mass Spectrom., 2010, 21, 1762-1774]. In fact, the measurements described here indicate that the modest mobility decrease observed can be partly attributed to sulfolane trapping within the protein ions during DMA measurements, and probably also in solution. As the most abundant peaks in measured mass-mobility spectra for ions produced with and without sulfolane correspond to non-covalently bound phosphorylase B dimers, we find that in spite of a change in mobility/cross section, sulfolane addition does not

  20. Charge-exchange Induced Modulation of the Heliosheath Ion Distribution Downstream of the Termination Shock

    Science.gov (United States)

    Fahr, H. J.; Fichtner, H.; Scherer, K.

    2015-12-01

    We consider the evolution of the solar wind ion distribution function alongthe plasma flow downstream from the termination shock induced by chargeexchange processes with cold interstellar H-atoms. We start from a kineticphase space transport equation valid in the bulk frame of the plasma flowthat takes into account convective changes, cooling processes, energydiffusion and ion injection, and describes solar wind and pick-up ionsas a co-moving, isotropic, joint ion population. From this kinetic transportequation one can ascend to an equation for the pressure moment of the iondistribution function, a so-called pressure transport equation, describingthe evolution of the ion pressure in the comoving rest frame. Assuming thatthe local ion distribution can be represented by an adequate kappa functionwith a kappa parameter that varies with the streamline coordinate, weobtain an ordinary differential equation for kappa as function of thestreamline coordinate s. With this result then we gain the heliosheath iondistribution function downstream of the termination shock. The latter thencan be used to predict the Voyager-2 measured moments of the distributionfunction like ion density and ion temperature, and it can also be used topredict spectral fluxes of ENA`s originating from these ions and registeredby IBEX-Hi and IBEX-Lo.We especially analyse the solar wind ion temperature decreasemeasured by Voyager-2 between the years 2008 to 2011 and try to explain itas a charge-exchange induced cooling of the ion distribution function duringthe associated ion convection period.

  1. Relative Stability of Peptide Sequence Ions Generated by Tandem Mass Spectrometry

    Science.gov (United States)

    Bythell, Benjamin J.; Hendrickson, Christopher L.; Marshall, Alan G.

    2012-04-01

    We report the use of unimolecular dissociation by infrared radiation for gaseous multiphoton energy transfer to determine relative activation energy (Ea,laser) for dissociation of peptide sequence ions. The sequence ions of interest are mass-isolated; the entire ion cloud is then irradiated with a continuous wave CO2 laser, and the first order rate constant, kd, is determined for each of a series of laser powers. Provided these conditions are met, a plot of the natural logarithm of kd versus the natural logarithm of laser power yields a straight line, whose slope provides a measure of Ea,laser. This method reproduces the Ea values from blackbody radiative dissociation (BIRD) for the comparatively large, singly and doubly protonated bradykinin ions (nominally y 9 and y 9 2+ ). The comparatively small sequence ion systems produce Ea,laser values that are systematic underestimates of theoretical barriers calculated with density functional theory (DFT). However, the relative Ea,laser values are in qualitative agreement with the mobile proton model and available theory. Additionally, novel protonated cyclic-dipeptide (diketopiperazine) fragmentation reactions are analyzed with DFT. FT-ICR MS provides access to sequence ions generated by electron capture dissociation, infrared multiphoton dissociation, and collisional activation methods (i.e., b n , y m , c n , z m • ions).

  2. Uncovering the Sensitivity of Amide-II Vibration to Peptide-Ion Interactions.

    Science.gov (United States)

    Zhao, Juan; Wang, Jianping

    2016-09-15

    In this work, linear infrared spectroscopy was used to examine the effect of salt on the amide-II mode in a model β-peptide (N-ethylpropionamide, NEPA) in its deuterated form, to reveal the sensitivity of this mode in reporting peptide-ion interactions. In comparison to the case of NEPA in water, the amide-II spectra mainly showed a red-shifted component in four typical saline solutions (NaCl, CaCl2, MgCl2, and AlCl3) examined in this work. Our results suggest that highly populated hydrated ion complexes under high salt concentration conditions destroy the hydration layer of the model peptide and result in mostly a salting-out state of the peptide. Molecular dynamics simulations suggest that the hydrated cation mainly interacts with the peptide backbone on the amide C═O side, whereas the hydrated anion interacts on the amide N-H side. As the amide-II mode is mainly a combination of the C-N stretching and N-H in-plane-bending vibrations, this mode is advantageous in being responsive to ionic interaction from both the C═O and N-H sides. Such a dual sensitivity should be very useful in probing the breaking and/or formation of the interamide hydrogen bond between the C═O and N-H groups, which is a very important interaction involved in the solvation and stabilization, as well as folding/unfolding of proteins.

  3. Production of intense highly charged ion beams by IMP 14.5 GHz electron cyclotron resonance ion source

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    A new 14.5 GHz Electron Cyclotron Resonance (ECR) ion source has been constructed over the last two years. The source was designed and tested by making use of the latest results from ECR ion source development, such as high mirror magnetic field, large plasma volume, and biased probe. 140μA of O7+, 185μA of Ar11+ and 50 μA of Xe26+ could be produced with a RF power of 800 W. The intense beams of highly charged metallic ions are produced by means of the method of a metal evaporation oven and volatile compound through axial access. The test results are 130μA of Ca11+, 70μA of Ca12+ and 65μA of Fe10+. The ion source has been put into operation for the cyclotron at the Institute of Modern Physics (IMP).

  4. Spectroscopy of few-electron highly charged ions

    CERN Document Server

    Tarbutt, M R

    2000-01-01

    attainable precision is as high as 0.2%. New techniques for measuring QED effects in the ground states of the hydrogen-like ions are proposed, which avoid the need for absolute x-ray calibration. Using the fast-beam laser resonance technique the 1s2p sup 3 P sub 0 - sup 3 P sub 1 fine-structure interval in helium-like Mg sup 1 sup 0 sup + has been measured, with the result nu-tilde sub 0 sub 1 = 833.133 (14) cm sup - sup 1. This measurement is a very sensitive test of the higher-order relativistic and QED terms of the theory for the fine-structure in helium and the light helium-like ions. This theory will be used to obtain a new value for the fine structure constant by comparing its results with precision measurements of the n = 2 fine structure in helium. Although there is a large discrepancy between the present measurement and the current theoretical value for this interval, the discrepancy lies within the estimated size of the unevaluated terms in the theory. A preliminary measurement of the 2s Lamb shift ...

  5. Potential and Kinetic Electron Emissions from HOPG Surface Irradiated by Highly Charged Xenon and Neon Ions

    Institute of Scientific and Technical Information of China (English)

    WANG Yu-Yu; ZHAO Yong-Tao; SUN Jian-Rong; LI De-Hui; QAYYUM Abdul; LI Jin-Yu; WANG Ping-Zhi; XIAO Guo-Qing

    2011-01-01

    Highly charged 129 Xeq+ (q =10-30) and 40Neq+ (q =4-8) ion-induced secondary electron emissions on the surface of highly oriented pyrolytic graphite (HOPG) are reported. The total secondary electron yield is measured as a function of the potential energy of incident ions. The experimental data are used to separate contributions of kinetic and potential electron yields. Our results show that about 4.5% and 13.2% of ion's potential energies are consumed in potential electron emission due to different Xeq+-HOPG and Neq+-HOPG combinations. A simple formula is introduced to estimate the fraction of ion's potential energy for potential electron emission.%@@ Highly charged 129 Xeq+(q =10-30) and 40Neq+(q =4-8) ion-induced secondary electron emissions on the surface of highly oriented pyrolytic graphite(HOPG) are reported.The total secondary electron yield is measured as a function of the potential energy of incident ions.The experimental data are used to separate contributions of kinetic and potential electron yields.Our results show that about 4.5% and 13.2% of ion's potential energies are consumed in potential electron emission due to different Xeq+-HOPG and Neq+-HOPG combinations.A simple formula is introduced to estimate the fraction of ion's potential energy for potential electron emission.

  6. Contribution of charge-transfer processes to ion-induced electron emission

    Energy Technology Data Exchange (ETDEWEB)

    Roesler, M. [Departamento de Fisica de Materiales, Facultad de Quimica, UPV/EHU, Apartado 1072, 20080 San Sebastian (Spain); Garcia de Abajo, F.J. [Departamento de Ciencias de la Computacion e Inteligencia Artificial, Facultad de Informatica, UPV/EHU, Apartado 649, 20080 San Sebastian (Spain)

    1996-12-01

    Charge changing events of ions moving inside metals are shown to contribute significantly to electron emission in the intermediate velocity regime via electrons coming from projectile ionization. Inclusion of equilibrium charge state fractions, together with two-electron Auger processes and resonant-coherent electron loss from the projectile, results in reasonable agreement with previous calculations for frozen protons, though a significant part of the emission is now interpreted in terms of charge exchange. The quantal character of the surface barrier transmission is shown to play an important role. The theory compares well with experimental observations for {ital H} projectiles. {copyright} {ital 1996 The American Physical Society.}

  7. Charge-state-dependent energy loss of slow ions. II. Statistical atom model

    Science.gov (United States)

    Wilhelm, Richard A.; Möller, Wolfhard

    2016-05-01

    A model for charge-dependent energy loss of slow ions is developed based on the Thomas-Fermi statistical model of atoms. Using a modified electrostatic potential which takes the ionic charge into account, nuclear and electronic energy transfers are calculated, the latter by an extension of the Firsov model. To evaluate the importance of multiple collisions even in nanometer-thick target materials we use the charge-state-dependent potentials in a Monte Carlo simulation in the binary collision approximation and compare the results to experiment. The Monte Carlo results reproduce the incident charge-state dependence of measured data well [see R. A. Wilhelm et al., Phys. Rev. A 93, 052708 (2016), 10.1103/PhysRevA.93.052708], even though the experimentally observed charge exchange dependence is not included in the model.

  8. Ion funnel ion trap and process

    Science.gov (United States)

    Belov, Mikhail E [Richland, WA; Ibrahim, Yehia M [Richland, WA; Clowers, Biran H [West Richland, WA; Prior, David C [Hermiston, OR; Smith, Richard D [Richland, WA

    2011-02-15

    An ion funnel trap is described that includes a inlet portion, a trapping portion, and a outlet portion that couples, in normal operation, with an ion funnel. The ion trap operates efficiently at a pressure of .about.1 Torr and provides for: 1) removal of low mass-to-charge (m/z) ion species, 2) ion accumulation efficiency of up to 80%, 3) charge capacity of .about.10,000,000 elementary charges, 4) ion ejection time of 40 to 200 .mu.s, and 5) optimized variable ion accumulation times. Ion accumulation with low concentration peptide mixtures has shown an increase in analyte signal-to-noise ratios (SNR) of a factor of 30, and a greater than 10-fold improvement in SNR for multiply charged analytes.

  9. Ion optics and beam dynamics optimization at the HESR storage ring for the SPARC experiments with highly charged heavy ions

    Energy Technology Data Exchange (ETDEWEB)

    Kovalenko, Oleksandr

    2015-06-24

    The High-Energy Storage Ring (HESR) is a part of an upcoming International Facility for Antiproton and Ion Research (FAIR) at GSI in Darmstadt. A key part of a scientific program, along with antiproton physics, will be physics with highly-charged heavy ions. Phase-space cooled beams together with fixed internal target will provide an excellent environment for storage ring experiments at the HESR for the SPARC collaboration. Until recently, however, the existing ion optical lattice for the HESR was designed only for the experiments with antiproton beams. The thesis presents a new ion optical mode developed specifically for the operation of the HESR with highly charged heavy ions. The presence of the errors, such as beam momentum spread, magnetic field impurities or magnets misalignments, leads to disruption of beam dynamics: exciting of resonant motion and loss of beam stability. Within the paper, these effects are investigated with the help of numerical codes for particle accelerator design and simulation MAD-X and MIRKO. A number of correction techniques are applied to minimize the nonlinear impact on the beam dynamics and improve the experimental conditions. The application of the analytical and numerical tools is demonstrated in the experiment with uranium U{sup 90+} beam at the existing storage ring ESR, GSI.

  10. Potential energy, force distribution and oscillatory motion of chloride ion inside electrically charged carbon nanotubes

    Science.gov (United States)

    Sadeghi, F.; Ansari, R.; Darvizeh, M.

    2016-06-01

    In this research, a continuum-based model is presented to explore potential energy, force distribution and oscillatory motion of ions, and in particular chloride ion, inside carbon nanotubes (CNTs) decorated by functional groups at two ends. To perform this, van der Waals (vdW) interactions between ion and nanotube are modeled by the 6-12 Lennard-Jones (LJ) potential, whereas the electrostatic interactions between ion and functional groups are modeled by the Coulomb potential and the total interactions are analytically derived by summing the vdW and electrostatic interactions. Making the assumption that carbon atoms and charge of functional groups are all uniformly distributed over the nanotube surface and the two ends of nanotube, respectively, a continuum approach is utilized to evaluate the related interactions. Based on the actual force distribution, the equation of motion is also solved numerically to arrive at the time history of displacement and velocity of inner core. With respect to the proposed formulations, comprehensive studies on the variations of potential energy and force distribution are carried out by varying functional group charge and nanotube length. Moreover, the effects of these parameters together with initial conditions on the oscillatory behavior of system are studied and discussed in detail. It is found out that chloride ion escapes more easily from negatively charged CNTs which is followed by uncharged and positively charged ones. It is further shown that the presence of functional groups leads to enhancing the operating frequency of such oscillatory systems especially when the electric charges of ion and functional groups have different signs.

  11. Charge collection efficiency degradation induced by MeV ions in semiconductor devices: Model and experiment

    Energy Technology Data Exchange (ETDEWEB)

    Vittone, E., E-mail: ettore.vittone@unito.it [Department of Physics, NIS Research Centre and CNISM, University of Torino, via P. Giuria 1, 10125 Torino (Italy); Pastuovic, Z. [Centre for Accelerator Science (ANSTO), Locked bag 2001, Kirrawee DC, NSW 2234 (Australia); Breese, M.B.H. [Centre for Ion Beam Applications (CIBA), Department of Physics, National University of Singapore, Singapore 117542 (Singapore); Garcia Lopez, J. [Centro Nacional de Aceleradores (CNA), Sevilla University, J. Andalucia, CSIC, Av. Thomas A. Edison 7, 41092 Sevilla (Spain); Jaksic, M. [Department for Experimental Physics, Ruder Boškovic Institute (RBI), P.O. Box 180, 10002 Zagreb (Croatia); Raisanen, J. [Department of Physics, University of Helsinki, Helsinki 00014 (Finland); Siegele, R. [Centre for Accelerator Science (ANSTO), Locked bag 2001, Kirrawee DC, NSW 2234 (Australia); Simon, A. [International Atomic Energy Agency (IAEA), Vienna International Centre, P.O. Box 100, 1400 Vienna (Austria); Institute of Nuclear Research of the Hungarian Academy of Sciences (ATOMKI), Debrecen (Hungary); Vizkelethy, G. [Sandia National Laboratories (SNL), PO Box 5800, Albuquerque, NM (United States)

    2016-04-01

    Highlights: • We study the electronic degradation of semiconductors induced by ion irradiation. • The experimental protocol is based on MeV ion microbeam irradiation. • The radiation induced damage is measured by IBIC. • The general model fits the experimental data in the low level damage regime. • Key parameters relevant to the intrinsic radiation hardness are extracted. - Abstract: This paper investigates both theoretically and experimentally the charge collection efficiency (CCE) degradation in silicon diodes induced by energetic ions. Ion Beam Induced Charge (IBIC) measurements carried out on n- and p-type silicon diodes which were previously irradiated with MeV He ions show evidence that the CCE degradation does not only depend on the mass, energy and fluence of the damaging ion, but also depends on the ion probe species and on the polarization state of the device. A general one-dimensional model is derived, which accounts for the ion-induced defect distribution, the ionization profile of the probing ion and the charge induction mechanism. Using the ionizing and non-ionizing energy loss profiles resulting from simulations based on the binary collision approximation and on the electrostatic/transport parameters of the diode under study as input, the model is able to accurately reproduce the experimental CCE degradation curves without introducing any phenomenological additional term or formula. Although limited to low level of damage, the model is quite general, including the displacement damage approach as a special case and can be applied to any semiconductor device. It provides a method to measure the capture coefficients of the radiation induced recombination centres. They can be considered indexes, which can contribute to assessing the relative radiation hardness of semiconductor materials.

  12. Qualitative computational bioanalytics: assembly of viral channel-forming peptides around mono and divalent ions.

    Science.gov (United States)

    Li, Li-Hua; Hsu, Hao-Jen; Fischer, Wolfgang B

    2013-12-06

    A fine-grained docking protocol was used to generate a bundle-like structure of the bitopic membrane protein Vpu from HIV-1. Vpu is a type I membrane protein with 81 amino acids. It is proposed that Vpu forms ion- and substrate-conducting bundles, which are located at the plasma membrane in the infected cell. The Vpu1-32 peptide that includes the transmembrane domain (TMD) is assembled into homo-pentameric bundles around prepositioned Na, K, Ca or Cl ions. For bundles with the lowest energy, the TMDs generate a hydrophobic pore. Bundles in which Ser-24 faces the pore have higher energy. The tilt of the helices in the lowest energy bundles is larger than bundles with serines facing the pore. Left-handed bundles are lowest in energy where the ions are located at the serines.

  13. Kinetic Modeling of the Neutral Gas, Ions, and Charged Dust in Europa's Exosphere

    Science.gov (United States)

    Tenishev, V.; Borovikov, D.; Rubin, M.; Jia, X.; Combi, M. R.

    2015-12-01

    The interaction of the Jovian magnetosphere with Europa has been a subject of active research during the last few decades both through in-situ and remote sensing observations as well as theoretical considerations. Linking the magnetosphere and the moon's surface and interior, Europa's exosphere has become one of the primary objects of study in the field. Understanding the physical processes occurring in the exosphere and its chemical composition is required for the understanding of the interaction between Europa and Jupiter. Europa's surface-bound exosphere originates mostly from ion sputtering of the water ice surface. Minor neutral species and ions of exospheric origin are produced via photolytic and electron impact reactions. The interaction of the Jovian magnetosphere and Europa affects the exospheric population of both neutrals and ions via source and loss processes. Moreover, the Lorentz force causes the newly created exospheric ions to move preferably aligned with the magnetic field lines. Contrary to the ions, heavier and slow-moving charged dust grains are mostly affected by gravity and the electric field component of the Lorentz force. As a result, escaping dust forms a narrow tail aligned in the direction of the convection electric field. Here we present results of a kinetic model of the neutral species (H2O, OH, O2, O, and H), ions (O+, O2+, H+, H2+, H2O+, and OH+), and neutral and charged dust in Europa's exosphere. In our model H2O and O2 are produced via sputtering and other exospheric neutral and ions species are produced via photolytic and electron impact reactions. For the charged dust we compute the equilibrium grain charge by balancing the electron and ion collecting currents according to the local plasma flow conditions at the grain's location. For the tracking of the ions, charged dust, and the calculation of the grains' charge we use plasma density and velocity, and the magnetic field derived from our multi-fluid MHD model of Europa

  14. Electron cooling of highly charged ions in penning traps; Elektronenkuehlung hochgeladener Ionen in Penningfallen

    Energy Technology Data Exchange (ETDEWEB)

    Moellers, B.

    2007-02-08

    For many high precision experiments with highly charged ions in ion traps it is necessary to work with low energy ions. One possibility to slow ions down to a very low energy in a trap is electron cooling, a method, which is already successfully used in storage rings to produce ion beams with high phase space density. Fast ions and a cold electron plasma are inserted into a Penning trap. The ions lose their energy due to Coulomb interaction with the electrons while they cross the plasma, the electrons are heated. The cooling time is the time, which is needed to cool an ion from a given initial energy to a low final energy. To calculate cooling times it is necessary to solve coupled differential equations for the ion energy and electron temperature. In a Penning trap the strong external magnetic field constitutes a theoretical challenge, as it influences the energy loss of the ions in an electron plasma, which can no longer be calculated analytically. In former estimates of cooling times this influence is neglected. But simulations show a dramatic decrease of the energy loss in the presence of a strong magnetic field, so it is necessary to investigate the effect of the magnetic field on the cooling times. This work presents a model to calculate cooling times, which includes both the magnetic field and the trap geometry. In a first step a simplified model without the external trap potential is developed. The energy loss of the ions in the magnetized electron plasma is calculated by an analytic approximation, which requires a numerical solution of integrals. With this model the dependence of the cooling time on different parameters like electron and ion density, magnetic field and the angle between ion velocity and magnetic field is studied for fully ionized uranium. In addition the influence of the electron heating is discussed. Another important topic in this context is the recombination between ions and electrons. The simplified model for cooling times allows to

  15. Calcium-Ion-Triggered Co-assembly of Peptide and Polysaccharide into a Hybrid Hydrogel for Drug Delivery

    Science.gov (United States)

    Xie, Yanyan; Zhao, Jun; Huang, Renliang; Qi, Wei; Wang, Yuefei; Su, Rongxin; He, Zhimin

    2016-04-01

    We report a new approach to constructing a peptide-polysaccharide hybrid hydrogel via the calcium-ion-triggered co-assembly of fluorenylmethyloxycarbonyl-diphenylalanine (Fmoc-FF) peptide and alginate. Calcium ions triggered the self-assembly of Fmoc-FF peptide into nanofibers with diameter of about 30 nm. Meanwhile, alginate was rapidly crosslinked by the calcium ions, leading to the formation of stable hybrid hydrogel beads. Compared to alginate or Fmoc-FF hydrogel alone, the hybrid Fmoc-FF/alginate hydrogel had much better stability in both water and a phosphate-buffered solution (PBS), probably because of the synergistic effect of noncovalent and ionic interactions. Furthermore, docetaxel was chosen as a drug model, and it was encapsulated by hydrogel beads to study the in vitro release behavior. The sustained and controlled docetaxel release was obtained by varying the concentration ratio between Fmoc-FF peptide and alginate.

  16. Database for inelastic collisions of lithium atoms with electrons, protons, and multiply charged ions

    NARCIS (Netherlands)

    Schweinzer, J; Brandenburg, R; Bray, [No Value; Hoekstra, R; Aumayr, F; Janev, RK; Winter, HP

    1999-01-01

    New experimental and theoretical cross-section data for inelastic collision processes of Li atoms in the ground state and excited states (up to n = 4) with electrons, protons, and multiply charged ions have been reported since the database assembled by Wutte et al. [ATOMIC DATA AND NUCLEAR DATA TABL

  17. Effect of ion compensation of the beam space charge on gyrotron operation

    Energy Technology Data Exchange (ETDEWEB)

    Fokin, A. P.; Glyavin, M. Yu. [Institute of Applied Physics, Russian Academy of Sciences, Nizhny Novgorod 603950 (Russian Federation); Nusinovich, G. S. [Institute for Research in Electronics and Applied Physics, University of Maryland, College Park, Maryland 20742-3511 (United States)

    2015-04-15

    In gyrotrons, the coherent radiation of electromagnetic waves takes place when the cyclotron resonance condition between the wave frequency and the electron cyclotron frequency or its harmonic holds. The voltage depression caused by the beam space charge field changes the relativistic cyclotron frequency and, hence, can play an important role in the beam-wave interaction process. In long pulse and continuous-wave regimes, the beam space charge field can be partially compensated by the ions, which appear due to the beam impact ionization of neutral molecules of residual gases in the interaction space. In the present paper, the role of this ion compensation of the beam space charge on the interaction efficiency is analyzed. We also analyze the effect of the electron velocity spread on the limiting currents and discuss some effects restricting the ion-to-beam electron density ratio in the saturation stage. It is shown that the effect of the ion compensation on the voltage depression caused by the beam space charge field can cause significant changes in the efficiency of gyrotron operation and, in some cases, even result in the break of oscillations.

  18. ELECTRON-CAPTURE IN HIGHLY-CHARGED ION-ATOM COLLISIONS

    NARCIS (Netherlands)

    MORGENSTERN, R

    1993-01-01

    An attempt is made to identify the most important mechanisms responsible for the rearrangement of electrons during collisions between multiply charged ions and atoms at keV energies. It is discussed to which extent the influence of binding energy, angular momentum of heavy particles and electrons, a

  19. A metal ion charged mixed matrix membrane for selective adsorption of hemoglobin

    NARCIS (Netherlands)

    Tetala, K.K.R.; Skrzypek, K.; Levisson, M.; Stamatialis, D.F.

    2013-01-01

    In this work, we developed a mixed matrix membrane by incorporating 20–40 µm size iminodiacetic acid modified immobeads within porous Ethylene vinyl alcohol (EVAL) polymer matrix. The MMM were charged with copper ions for selective adsorption of bovine hemoglobin in presence of bovine serum albumin.

  20. Solid-state NMR Study of Ion Adsorption and Charge Storage in Graphene Film Supercapacitor Electrodes

    Science.gov (United States)

    Li, Kecheng; Bo, Zheng; Yan, Jianhua; Cen, Kefa

    2016-12-01

    Graphene film has been demonstrated as promising active materials for electric double layer capacitors (EDLCs), mainly due to its excellent mechanical flexibility and freestanding morphology. In this work, the distribution and variation pattern of electrolyte ions in graphene-film based EDLC electrodes are investigated with a 11B magic-angle spinning nuclear magnetic resonance (MAS-NMR) spectroscopy. For neutral graphene films soaked with different amounts of electrolytes (1 M TEABF4/ACN), weakly and strongly adsorbed anions are identified based on the resonances at different 11B chemical shifts. Unlike other porous carbonaceous materials, the strongly adsorbed anions are found as the major electrolyte anions components in graphene films. Further measurements on the ion population upon charging are carried out with applying different charging voltages on the graphene films. Results indicate that the charging process of graphene-film based EDLCs can be divided into two distinct charge storage stages (i.e., ejection of co-ions and adsorption of counter-ions) for different voltages. The as-obtained results will be useful for the design and fabrication of high performance graphene-film based EDLCs.

  1. Charged patchy particle models in explicit salt: Ion distributions, electrostatic potentials, and effective interactions

    Energy Technology Data Exchange (ETDEWEB)

    Yigit, Cemil; Dzubiella, Joachim, E-mail: joachim.dzubiella@helmholtz-berlin.de [Soft Matter and Functional Materials, Helmholtz-Zentrum Berlin, 14109 Berlin (Germany); Helmholtz Virtual Institute “Multifunctional Biomaterials for Medicine,” 14513 Teltow (Germany); Institut für Physik, Humboldt-Universität zu Berlin, 12489 Berlin (Germany); Heyda, Jan [Department of Physical Chemistry, University of Chemistry and Technology, Prague, 166 28 Praha 6 (Czech Republic)

    2015-08-14

    We introduce a set of charged patchy particle models (CPPMs) in order to systematically study the influence of electrostatic charge patchiness and multipolarity on macromolecular interactions by means of implicit-solvent, explicit-ion Langevin dynamics simulations employing the Gromacs software. We consider well-defined zero-, one-, and two-patched spherical globules each of the same net charge and (nanometer) size which are composed of discrete atoms. The studied mono- and multipole moments of the CPPMs are comparable to those of globular proteins with similar size. We first characterize ion distributions and electrostatic potentials around a single CPPM. Although angle-resolved radial distribution functions reveal the expected local accumulation and depletion of counter- and co-ions around the patches, respectively, the orientation-averaged electrostatic potential shows only a small variation among the various CPPMs due to space charge cancellations. Furthermore, we study the orientation-averaged potential of mean force (PMF), the number of accumulated ions on the patches, as well as the CPPM orientations along the center-to-center distance of a pair of CPPMs. We compare the PMFs to the classical Derjaguin-Verwey-Landau-Overbeek theory and previously introduced orientation-averaged Debye-Hückel pair potentials including dipolar interactions. Our simulations confirm the adequacy of the theories in their respective regimes of validity, while low salt concentrations and large multipolar interactions remain a challenge for tractable theoretical descriptions.

  2. Average charge states of heavy and superheavy ions passing through a rarified gas : Theory and experiment

    NARCIS (Netherlands)

    Khuyagbaatar, J.; Shevelko, V. P.; Borschevsky, A.; Duellmann, Ch. E.; Tolstikhina, I. Yu.; Yakushev, A.

    2013-01-01

    The average charge states (q) over bar of heavy and superheavy ions (atomic numbers Z = 80-114) passing through He gas are studied experimentally and theoretically. Experimental data were measured at the gas-filled recoil separator, i.e., the TransActinide Separator and Chemistry Apparatus (TASCA) a

  3. Near-resonant versus nonresonant chemiluminescent charge-transfer reactions of atomic ions with HCl

    Science.gov (United States)

    Glenewinkel-Meyer, Th.; Ottinger, Ch.

    1994-01-01

    Charge-transfer reactions of C+, O+, F+, Ar+ and some other atomic ions with hydrogen chloride were investigated at collision energies between eVc.m.. This may be due to formation of a long-lived collision complex (Ar-HCl)+.

  4. Preparation of cold Mg{sup +}ion clouds for sympathetic cooling of highly charged ions at SPECTRAP

    Energy Technology Data Exchange (ETDEWEB)

    Cazan, Radu Mircea

    2012-02-15

    The bound electrons in hydrogen-like or lithium-like heavy ions experience extremely strong electric and magnetic fields in the surrounding of the nucleus. Laser spectroscopy of the ground-state hyperfine splitting in the lead region provides a sensitive tool to test strong-field quantum electro dynamics (QED), especially in the magnetic sector. Previous measurements on hydrogen-like systems performed in an electron-beam ion trap (EBIT) or at the experimental storage ring (ESR) were experimentally limited in accuracy due to statistics, the large Doppler broadening and the ion energy. The full potential of the QED test can only be exploited if measurements for hydrogen- and lithium-like ions are performed with accuracy improved by 2-3 orders of magnitude. Therefore, the new Penning trap setup SPECTRAP - dedicated for laser spectroscopy on trapped and cooled highly charged ions - is currently commissioned at GSI Darmstadt. Heavy highly charged ions will be delivered to this trap by the HITRAP facility in the future. SPECTRAP is a cylindrical Penning trap with axial access for external ion injection and radial optical access mounted inside a cold-bore superconducting Helmholtz-type split-coil magnet. To reach the targeted accuracy in laser spectroscopy, an efficient and fast cooling process for the highly charged ions must be employed. This can be realized by sympathetic cooling with a cloud of laser-cooled light ions. Within this thesis work, a laser system and an ion source for the production of such a {sup 24}Mg{sup +} ion cloud was developed and commissioned at SPECTRAP. An all-solid-state laser system for the generation of 279.6 nm light was designed and built. It consists of a fiber laser at 1118.5 nm followed by frequency quadrupling using two successive second-harmonic generation stages with actively stabilized ring resonators and nonlinear crystals. The laser system can deliver more than 15 mW of UV laser power under optimal conditions and requires little

  5. Surface modification of oxide layer on Si using highly charged ions

    Energy Technology Data Exchange (ETDEWEB)

    Sakurai, M., E-mail: msakurai@kobe-u.ac.jp [Department of Physics, Kobe University, Rokkodai, Nada-ku, Kobe 657-8501 (Japan); Liu, S.; Sakai, S. [Department of Physics, Kobe University, Rokkodai, Nada-ku, Kobe 657-8501 (Japan); Ohtani, S. [Institute for Laser Science, University of Electro-Communications, Chofu, Tokyo 182-8585 (Japan); Terui, T. [National Institute of Information and Communications Technology, Iwaoka, Nishi-ku, Kobe 651-2492 (Japan); Sakaue, H.A. [National Institute for Fusion Science, Oroshi-cho, Toki 509-5292 (Japan)

    2013-11-15

    Surface modification using highly charged ions is presented. The surface of a Si wafer which is covered with a native oxide layer is used as a sample. The sample was irradiated with Ar{sup 11+} ions at a fluence of 10{sup 13}–10{sup 14}/cm{sup 2}. The Ar{sup 11+} ions were obtained from an electron beam ion source (Kobe EBIS). The surface was investigated using secondary electron microscopy, X-ray photoelectron spectroscopy and high-resolution electron energy loss spectroscopy. The obtained results suggest that the native oxide layer is sputtered by the irradiation of Ar{sup 11+} ions and that the structural modification makes the density of the oxide layer lower and the electric conductivity higher.

  6. Multi-turn injection into a heavy-ion synchrotron in the presence of space charge

    CERN Document Server

    Appel, Sabrina

    2014-01-01

    For heavy-ion synchrotrons an efficient Multi-Turn Injection (MTI) from the injector linac is crucial in order to reach the specified currents using the available machine acceptance. The beam loss during the MTI must not exceed the limits determined by machine protection and by the vacuum requirements. Especially for low energy and intermediate charge state ions, the beam loss at the injection septum can cause a degradation of the vacuum and a corresponding reduction of the beam lifetime. In order to optimize the injection of intense beams a very detailed simulation model was developed. Besides the closed orbit bump, lattice errors, the position of the septum and other aperture limiting components the transverse space charge force is included self-consistently. The space charge force causes a characteristic shift of the optimum tunes and a smoothing of the phase space density.

  7. Charge exchange of medium energy H and He ions emerging from solid surfaces

    Science.gov (United States)

    Kitsudo, Y.; Shibuya, K.; Nishimura, T.; Hoshino, Y.; Vickridge, I.; Kido, Y.

    2009-02-01

    Charge exchange of medium energy H and He ions emerging from clean solid surfaces is studied extensively using a toroidal electrostatic analyzer with an excellent energy resolution. The charge distributions of He ions scattered from sub-monolayers near a surface are non-equilibrated, resulting in a surface peak even for poly-crystal solids. By solving simultaneous rate equations numerically, we derive electron capture and loss cross sections for Ni and Au surfaces. Based on a free electron gas model, non-equilibrated He+ fractions dependent on emerging angle reveals uniform electronic surfaces for metals and corrugated surfaces for Si and graphite with covalent bonds. It is also found that equilibrium charge fractions of H+ are independent of surface materials (Z2) and in contrast equilibrium He+ fractions depend pronouncedly on Z2. The data obtained are compared with semi-empirical formulas.

  8. The evolution of ion charge states in cathodic vacuum arc plasmas: a review

    Energy Technology Data Exchange (ETDEWEB)

    Anders, Andre

    2011-12-18

    Cathodic vacuum arc plasmas are known to contain multiply charged ions. 20 years after “Pressure Ionization: its role in metal vapour vacuum arc plasmas and ion sources” appeared in vol. 1 of Plasma Sources Science and Technology, it is a great opportunity to re-visit the issue of pressure ionization, a non-ideal plasma effect, and put it in perspective to the many other factors that influence observable charge state distributions, such as the role of the cathode material, the path in the density-temperature phase diagram, the “noise” in vacuum arc plasma as described by a fractal model approach, the effects of external magnetic fields and charge exchange collisions with neutrals. A much more complex image of the vacuum arc plasma emerges putting decades of experimentation and modeling in perspective.

  9. Laser acceleration of electrons to giga-electron-volt energies using highly charged ions.

    Science.gov (United States)

    Hu, S X; Starace, Anthony F

    2006-06-01

    The recent proposal to use highly charged ions as sources of electrons for laser acceleration [S. X. Hu and A. F. Starace, Phys. Rev. Lett. 88, 245003 (2002)] is investigated here in detail by means of three-dimensional, relativistic Monte Carlo simulations for a variety of system parameters, such as laser pulse duration, ionic charge state, and laser focusing spot size. Realistic laser focusing effects--e.g., the existence of longitudinal laser field components-are taken into account. Results of spatial averaging over the laser focus are also presented. These numerical simulations show that the proposed scheme for laser acceleration of electrons from highly charged ions is feasible with current or near-future experimental conditions and that electrons with GeV energies can be obtained in such experiments.

  10. Role of nonthermal electrons on dust ion acoustic double layer with variable dust charge

    Science.gov (United States)

    Borah, Prathana; Gogoi, Deepshikha; Das, Nilakshi

    2016-01-01

    The presence of nonthermal electron may play an important role in the formation of nonlinear structures in plasma. On the other hand, fluctuation of dust charge is an important and unique feature of complex plasma and it gives rise to a dissipative effect in the system leading to the formation of nonlinear structures due to the balance between nonlinearity and dissipation. In this paper, the propagation of nonlinear dust ion acoustic (DIA) wave in unmagnetized collisionless dusty plasma consisting of ions, nonthermal electrons and dust grains with variable negative charge has been investigated using the Sagdeev potential method. The existence domain of rarefactive double layer (DL) in the DIA wave has been investigated for the range of plasma parameters. The real potential has been obtained by numerically solving the Poisson equation and dust charging equation. It is observed that the presence of nonthermal electrons strengthens the DIA DL.

  11. Changes in the molecular ion yield and fragmentation of peptides under various primary ions in ToF-SIMS and matrix-enhanced ToF-SIMS.

    Science.gov (United States)

    Körsgen, Martin; Tyler, Bonnie J; Pelster, Andreas; Lipinsky, Dieter; Dreisewerd, Klaus; Arlinghaus, Heinrich F

    2016-06-01

    Time of flight secondary ion mass spectrometry (ToF-SIMS) is a powerful technique for the nanoanalysis of biological samples, but improvements in sensitivity are needed in order to detect large biomolecules, such as peptides, on the individual cell level at physiological concentrations. Two promising options to improve the sensitivity of SIMS to large peptides are the use of cluster primary ions to increase desorption of intact molecules or the use of matrix-assisted laser desorption/ionization (MALDI) matrices to increase the ionization probability. In this paper, the authors have combined these two approaches in order to improve understanding of the interaction between ionization and fragmentation processes. The peptides bradykinin and melittin were prepared as neat monolayers on silicon, in a Dextran-40 matrix and in two common MALDI matrices, 2,5-dihydroxybenzoic acid (DHB) and α-cyano-4-hydroxy cinnamic acid (HCCA). ToF-SIMS spectra of these samples were collected using a range of small Bi cluster primary ions and large Ar cluster primary ions. The trends observed in the molecular ion yield and the [M+H](+)/C4H8N(+) ratio with primary ion cluster size were sample system dependent. The molecular ion yield of the bradykinin was maximized by using 30 keV Bi3 (+) primary ions in a DHB matrix but in the HCCA matrix, the maximum molecular ion yield was obtained by using 30 keV Bi7 (+) primary ions. In contrast, the molecular ion yield for melittin in both matrices was greatest using 20 keV Ar2000 (+) primary ions. Improvements in the molecular ion yield were only loosely correlated with a decrease in small fragment ions. The data indicate a complex interplay between desorption processes and ion formation processes which mean that the optimal analytical conditions depend on both the target analyte and the matrix.

  12. Development of diagnostic method for deep levels in semiconductors using charge induced by heavy ion microbeams

    Energy Technology Data Exchange (ETDEWEB)

    Kada, Wataru [Faculty of Science and Technology, Gunma University, Kiryu, Gunma 376-8515 (Japan); Kambayashi, Yuya [Faculty of Science and Technology, Gunma University, Kiryu, Gunma 376-8515 (Japan); Japan Atomic Energy Agency, 1233 Watanuki, Takasaki, Gunma 370-1292 (Japan); Iwamoto, Naoya; Onoda, Shinobu; Makino, Takahiro; Koka, Masashi; Kamiya, Tomihiro [Japan Atomic Energy Agency, 1233 Watanuki, Takasaki, Gunma 370-1292 (Japan); Hoshino, Norihiro; Tsuchida, Hidekazu [Central Research Institute of Electric Power Industry, 2-6-1 Nagasaka, Yokosuka, Kanagawa 240-0196 (Japan); Kojima, Kazutoshi [National Institute of Advanced Industrial Science and Technology, Tsukuba, Ibaraki 305-8568 (Japan); Hanaizumi, Osamu [Faculty of Science and Technology, Gunma University, Kiryu, Gunma 376-8515 (Japan); Ohshima, Takeshi, E-mail: ohshima.takeshi20@jaea.go.jp [Japan Atomic Energy Agency, 1233 Watanuki, Takasaki, Gunma 370-1292 (Japan)

    2015-04-01

    Highlights: •Charge Transient Spectroscopy using heavy ion microbeams (HIQTS) was developed. •HIQTS system is connected with 3 MeV Tandem accelerator at JAEA Takasaki. •Defects in 4H Silicon Carbide (SiC) Schottky diodes were evaluated using HIQTS. •6H-SiC pn diodes with partial damaged areas were also evaluated using HIQTS. -- Abstract: In order to study defects that create deep energy levels in semiconductors which act as carrier traps, Charge Transient Spectroscopy using heavy ion microbeams (HIQTS) was developed at JAEA Takasaki. The HIQTS system was connected with the heavy ion microbeam line of the 3 MV Tandem accelerator. Using the HIQTS system, deep levels in 4H-SiC Schottky barrier diodes irradiated with 3 MeV-protons were studied. As a result, a HIQTS peak with an activation energy of 0.73 eV was observed. In addition, local damage in 6H-SiC pn diodes partially irradiated with 12 MeV-O ion microbeams was studied using HIQTS. With increasing 12 MeV-O ion fluence, charge collection efficiency in locally damaged areas decreased and HIQTS signals increased.

  13. Laboratory measurements of K-shell transitions in highly charged iron ions

    Science.gov (United States)

    Steinbrügge, René; Rudolph, Jan K.; Bernitt, Sven; Crespo López-Urrutia, José R.

    2016-09-01

    The x-ray spectra of celestial sources show a plethora of features originating from highly charged ions. These can be used to determine the flow, temperatures, and abundances of elements in the star, which are needed to benchmark-stellar evolution models. However, the underlying atomic transition data of the ions are often only known by theoretical calculations, thus testing them in laboratory measurements is crucial. We present our measurements of energies, natural linewidths, radiative and Auger decay rates for K-shell transitions in He-like to F-like iron ions. In this experiments, an electron beam ion trap was used to create a target of highly charged ions, which were resonantly excited by monochromatic light from the PETRA III synchrotron radiation source. Fluorescence was observed while simultaneously detecting photoionization by the change in the ionic charge state. This method, combined with the high resolution of the monochromator used, yields uncertainties on the ppm-level for the excitation energies and below 10% for the linewidths and transition rates, thus providing a valuable benchmark for atomic theory.

  14. Thermodynamics of Ion Pair Formations Between Charged Poly(Amino Acid)s.

    Science.gov (United States)

    Petrauskas, Vytautas; Maximowitsch, Eglė; Matulis, Daumantas

    2015-09-17

    Electrostatic interactions between the positively and negatively charged amino acids in proteins play an important role in macromolecular stability, binding, and recognition. Numerous amino acids in proteins are ionizable and may exist in negatively (e.g., Glu, Asp, Cys, Tyr) or positively (e.g., Arg, Lys, His, Orn) charged form dependent on pH and their pKas. In this work, isothermal titration calorimetry was used to determine the average standard values of thermodynamic parameters (the Gibbs free energy, enthalpy, entropy, and the heat capacity) of interaction between the positively charged amino acid homopolymers (polyarginine, polylysine, and polyornithine) and the negatively charged homopolymers (polyaspartic and polyglutamic acids). These values are of potential use in the computational models of interacting proteins and other biological macromolecules. The study showed that oppositely charged poly(amino acid)s bound each other with the stoichiometry of one positive to one negative charge. Arginine bound to the negatively charged amino acids with exothermic enthalpy and higher affinity than lysine. This result also suggests that positive charges in proteins should not be considered entirely equivalent if carried by lysine or arginine. The difference in binding energy of arginine and lysine association with the negatively charged amino acids was attributed to the enthalpy of the second ionic hydrogen bond formation between the guanidine and carboxylic groups. Despite the favorable enthalpic contribution, all such ion pair formation reactions were largely entropy-driven. Consistent with previously observed ionic interactions, the positive heat capacity was always observed during the amino acid ion pair formation.

  15. Ammonium Ion Exchanged Zeolite for Laser Desorption/Ionization Mass Spectrometry of Phosphorylated Peptides

    Directory of Open Access Journals (Sweden)

    Mengrui Yang

    2015-01-01

    Full Text Available α-Cyano-4-hydroxycinnamic acid (CHCA, an organic matrix molecule for matrix-assisted laser desorption/ionization mass spectrometry, was adsorbed to NH4+-type zeolite surface, and this new matrix was used for the detection of low-molecular-weight compounds. It was found that this matrix could simplify the mass spectrum in the low-molecular-weight region and prevent interference from fragments and alkali metal ion adducted species. CHCA adsorbed to NH4+-type ZSM5 zeolite (CHCA/NH4ZSM5 was used to measure atropine and aconitine, two toxic alkaloids in plants. In addition, CHCA/NH4ZSM5 enabled us to detect phosphorylated peptides; peaks of the protonated peptides had higher intensities than the peaks observed using CHCA only.

  16. On the formation of highly charged gaseous ions from unfolded proteins by electrospray ionization.

    Science.gov (United States)

    Konermann, Lars; Rodriguez, Antony D; Liu, Jiangjiang

    2012-08-07

    Electrospray ionization (ESI) of native proteins results in a narrow distribution of low protonation states. ESI for these folded species proceeds via the charged residue mechanism. In contrast, ESI of unfolded proteins yields a wide distribution of much higher charge states. The current work develops a model that can account for this effect. Recent molecular dynamics simulations revealed that ESI for unfolded polypeptide chains involves protein ejection from nanodroplets, representing a type of ion evaporation mechanism (IEM). We point out the analogies between this IEM, and the dissociation of gaseous protein complexes after collisional activation. The latter process commences with unraveling of a single subunit, in concert with Coulombically driven proton transfer. The subunit then separates from the residual complex as a highly charged ion. We propose that similar charge equilibration events accompany the IEM of unfolded proteins, thereby causing the formation of high ESI charge states. A bead chain model is used for examining how charge is partitioned as protein and droplet separate. It is shown that protein ejection from differently sized ESI droplets generates a range of protonation states. The predicted behavior agrees well with experimental data.

  17. Polarization measurement of dielectronic recombination transitions in highly charged krypton ions

    CERN Document Server

    Shah, Chintan; Bernitt, Sven; Dobrodey, Stepan; Steinbrügge, René; Beilmann, Christian; Amaro, Pedro; Hu, Zhimin; Weber, Sebastian; Fritzsche, Stephan; Surzhykov, Andrey; López-Urrutia, José R Crespo; Tashenov, Stanislav

    2016-01-01

    We report linear polarization measurements of x rays emitted due to dielectronic recombination into highly charged krypton ions. The ions in the He-like through O-like charge states were populated in an electron beam ion trap with the electron beam energy adjusted to recombination resonances in order to produce $K\\alpha$ x rays. The x rays were detected with a newly developed Compton polarimeter using a beryllium scattering target and 12 silicon x-ray detector diodes sampling the azimuthal distribution of the scattered x rays. The extracted degrees of linear polarization of several dielectronic recombination transitions agree with results of relativistic distorted--wave calculations. We also demonstrate a high sensitivity of the polarization to the Breit interaction, which is remarkable for a medium-$Z$ element like krypton. The experimental results can be used for polarization diagnostics of hot astrophysical and laboratory fusion plasmas.

  18. Photodissociation and charge transfer dynamics of negative ions studied with femtosecond photoelectron spectroscopy

    Energy Technology Data Exchange (ETDEWEB)

    Zanni, Martin Thomas [Univ. of California, Berkeley, CA (United States)

    1999-12-01

    This dissertation presents studies aimed at understanding the potential energy surfaces and dynamics of isolated negative ions, and the effects of solvent on each. Although negative ions play important roles in atmospheric and solution phase chemistry, to a large extent the ground and excited state potential energy surfaces of gas phase negative ions are poorly characterized, and solvent effects even less well understood. In an effort to fill this gap, the author's coworkers and the author have developed a new technique, anion femtosecond photoelectron spectroscopy, and applied it to gas phase photodissociation and charge transfer processes. Studies are presented that (1) characterize the ground and excited states of isolated and clustered anions, (2) monitor the photodissociation dynamics of isolated and clustered anions, and (3) explore the charge-transfer-to-solvent states of atomic iodide clustered with polar and non-polar solvents.

  19. Photodissociation and charge transfer dynamics of negative ions studied with femtosecond photoelectron spectroscopy

    Energy Technology Data Exchange (ETDEWEB)

    Zanni, Martin T.

    1999-12-17

    This dissertation presents studies aimed at understanding the potential energy surfaces and dynamics of isolated negative ions, and the effects of solvent on each. Although negative ions play important roles in atmospheric and solution phase chemistry, to a large extent the ground and excited state potential energy surfaces of gas phase negative ions are poorly characterized, and solvent effects even less well understood. In an effort to fill this gap, the author's coworkers and the author have developed a new technique, anion femtosecond photoelectron spectroscopy, and applied it to gas phase photodissociation and charge transfer processes. Studies are presented that (1) characterize the ground and excited states of isolated and clustered anions, (2) monitor the photodissociation dynamics of isolated and clustered anions, and (3) explore the charge-transfer-to-solvent states of atomic iodide clustered with polar and non-polar solvents.

  20. Ion Compensation for Space Charge in the Helical Electron Beams of Gyrotrons

    Science.gov (United States)

    Manuilov, V. N.; Semenov, V. E.

    2016-06-01

    We solve analytically the problem about ion compensation for the space charge of a helical electron beam in a gyrotron operated in the long-pulse regime. Elementary processes, which take place during ionization of residual gas in the tube under typical pressures of 10-6-10-7 mm Hg, are considered. It is shown that distribution of the space charge is affected mainly by the electrons of the initial beam and slow-moving ions produced by ionization of the residual gas. Steady-state density of ions in the operating space of the gyrotron after the end of the transitional processes is found, as well as the electron density profile in the channel of electron beam transportation. The results obtained allow us to evaluate the pitch-factor variations caused by partial compensations for the potential "sagging" in the gyrotron cavity, thus being useful for analysis of starting currents, efficiency, and mode competition in high-power gyrotrons.

  1. Energy and charge dependence of the rate of electron-ion recombination in cold magnetized plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Gao, H.; Schuch, R.; Zong, W.; Justiniano, E.; DeWitt, D.R.; Lebius, H.; Spies, W. [Stockholm Univ., Atomic Physics Dept., Stockholm (Sweden)

    1997-07-28

    We have measured electron-ion recombination rates for bare ions of D{sup +}, He{sup 2+}, N{sup 7+}, Ne{sup 10+} and Si{sup 14+} in a storage ring. For the multi-charged ions an unexpected energy dependence was found, showing a strong increase of the measured rates over the calculated radiative recombination rate for electron beam detuning energies below the electron beam transverse temperature. The measured enhanced rates increase approximately as Z{sup 2.8} with the charge state Z. A comparison of these rates with theoretical predictions for collisional-radiative recombination in the cold magnetized electron plasma, in particular three-body recombination including radiative de-excitation of electrons in Rydberg levels, is made. (author).

  2. Highly charged ions in a dilute plasma: an exact asymptotic solution involving strong coupling.

    Science.gov (United States)

    Brown, Lowell S; Dooling, David C; Preston, Dean L

    2006-05-01

    The ion sphere model introduced long ago by Salpeter is placed in a rigorous theoretical setting. The leading corrections to this model for very highly charged but dilute ions in thermal equilibrium with a weakly coupled, one-component background plasma are explicitly computed, and the subleading corrections shown to be negligibly small. This is done using the effective field theory methods advocated by Brown and Yaffe. Thus, corrections to nuclear reaction rates that such highly charged ions may undergo can be computed precisely. Moreover, their contribution to the equation of state can also be computed with precision. Such analytic results for very strong coupling are rarely available, and they can serve as benchmarks for testing computer models in this limit.

  3. EUV spectra of highly-charged ions W$^{54+}$-W$^{63+}$ relevant to ITER diagnostics

    CERN Document Server

    Ralchenko, Yu; Tan, J N; Gillaspy, J D; Pomeroy, J M; Reader, J; Feldman, U; Holland, G E

    2008-01-01

    We report the first measurements and detailed analysis of extreme ultraviolet (EUV) spectra (4 nm to 20 nm) of highly-charged tungsten ions W$^{54+}$ to W$^{63+}$ obtained with an electron beam ion trap (EBIT). Collisional-radiative modelling is used to identify strong electric-dipole and magnetic-dipole transitions in all ionization stages. These lines can be used for impurity transport studies and temperature diagnostics in fusion reactors, such as ITER. Identifications of prominent lines from several W ions were confirmed by measurement of isoelectronic EUV spectra of Hf, Ta, and Au. We also discuss the importance of charge exchange recombination for correct description of ionization balance in the EBIT plasma.

  4. Charge generation by heavy ions in power MOSFETs, burnout space predictions, and dynamic SEB sensitivity

    Science.gov (United States)

    Stassinopoulos, E. G.; Brucker, G. J.; Calvel, P.; Baiget, A.; Peyrotte, C.; Gaillard, R.

    1992-01-01

    The transport, energy loss, and charge production of heavy ions in the sensitive regions of IRF 150 power MOSFETs are described. The dependence and variation of transport parameters with ion type and energy relative to the requirements for single event burnout in this part type are discussed. Test data taken with this power MOSFET are used together with analyses by means of a computer code of the ion energy loss and charge production in the device to establish criteria for burnout and parameters for space predictions. These parameters are then used in an application to predict burnout rates in a geostationary orbit for power converters operating in a dynamic mode. Comparisons of rates for different geometries in simulating SEU (single event upset) sensitive volumes are presented.

  5. Molecular dynamics investigation into the electric charge effect on the operation of ion-based carbon nanotube oscillators

    Science.gov (United States)

    Ansari, R.; Ajori, S.; Sadeghi, F.

    2015-10-01

    The fabrication of nanoscale oscillators working in the gigahertz (GHz) range and beyond has now become the focal center of interest to many researchers. Motivated by this issue, this paper proposes a new type of nano-oscillators with enhanced operating frequency in which both the inner core and outer shell are electrically charged. To this end, molecular dynamics (MD) simulations are performed to investigate the mechanical oscillatory behavior of ions, and in particular chloride ion, tunneling through electrically charged carbon nanotubes (CNTs). It is assumed that the electric charges with similar sign and magnitude are evenly distributed on two ends of nanotube. The interatomic interactions between carbon atoms and van der Waals (vdW) interactions between ion and nanotube are respectively modeled by Tersoff-Brenner and Lennard-Jones (LJ) potential functions, whereas the electrostatic interactions between ion and electric charges are modeled by Coulomb potential function. A comprehensive study is conducted to get an insight into the effects of different parameters such as sign and magnitude of electric charges, nanotube radius, nanotube length and initial conditions (initial separation distance and velocity) on the oscillatory behavior of chloride ion-charged CNT oscillators. It is shown that, the chloride ion frequency inside negatively charged CNTs is lower than that inside positively charged ones with the same magnitude of electric charge, while it is higher than that inside uncharged CNTs. It is further observed that, higher frequencies are generated at higher magnitudes of electric charges distributed on the nanotube.

  6. Soft-X-ray spectra of highly charged Os, Bi, Th, and U ions in an electron beam ion trap

    Energy Technology Data Exchange (ETDEWEB)

    Trabert, E; Beiersdorfer, P; Fournier, K B; Chen, M H

    2004-12-03

    Systematic variation of the electron-beam energy in an electron-beam ion trap has been employed to produce soft-X-ray spectra of Os, Bi, Th, and U with highest charge states ranging up to Ni-like ions. Guided by relativistic atomic structure calculations, the strongest lines have been identified with {Delta}n = 0 (n = 4 to n' = 4) transitions in Rb- to Cu-like ions. The rather weak 4p-4d transitions are much less affected by QED contributions than the dominant 4s-4p transitions. Our wavelength measurements consequently provide benchmarks with and (almost) without QED. Because the radiative corrections are not very sensitive to the number of electrons in the valence shell, our data, moreover, provide benchmarks for the evaluation of electron-electron interactions.

  7. Projectile- and charge-state-dependent electron yields from ion penetration of solids as a probe of preequilibrium stopping power

    DEFF Research Database (Denmark)

    Rothard, H.; Schou, Jørgen; Groeneveld, K.-O.

    1992-01-01

    Kinetic electron-emission yields gamma from swift ion penetration of solids are proportional to the (electronic) stopping power gamma approximately Beta-S*, if the preequilibrium evolution of the charge and excitation states of the positively charged ions is taken into account. We show...... that the concept of the preequilibrium near-surface stopping S* can be applied successfully to describe the dependence of the ion-induced electron yields on the projectile atomic number Z(P) and on the charge states q(i) of the incoming ions. We discuss the implementation of this concept into Schou's transport...

  8. Charged Polymer-Coated Separators by Atmospheric Plasma-Induced Grafting for Lithium-Ion Batteries.

    Science.gov (United States)

    Han, Mina; Kim, Dong-Won; Kim, Yeong-Cheol

    2016-10-05

    A simple and fast method of atmospheric plasma-induced grafting was applied over a polyethylene membrane to enhance its performance as a separator for lithium-ion batteries. The process of grafting has formed a thin, durable, and uniform layer on the surface of the porous membrane. The charges of grafted polymers affected the performance of batteries in many ways besides the change of hydrophilicity. Negative charges in polymers improve the capacity retention of batteries and the uniformity of the SEI layer. On the other hand, the electrostatic attraction between different charges contributed to small increases of thermal stability and mechanical strength of separators. Polyampholyte was grafted by using the mixtures of monomers, and the composition of the grafted layer was optimized. The formation of stable uniform SEI layers and the marked improvement in capacity retention were observed in the full cell tests of the lithium battery with the polyampholyte-grafted separators when the polyampholyte has a negative net charge.

  9. Charge stripping of U238 ion beam by helium gas stripper

    Science.gov (United States)

    Imao, H.; Okuno, H.; Kuboki, H.; Yokouchi, S.; Fukunishi, N.; Kamigaito, O.; Hasebe, H.; Watanabe, T.; Watanabe, Y.; Kase, M.; Yano, Y.

    2012-12-01

    Development of a nondestructive, efficient electric-charge-stripping method is a key requirement for next-generation high-intensity heavy-ion accelerators such as the RIKEN Radioactive-Isotope Beam Factory. A charge stripper employing a low-Z gas is an important candidate applicable to high-intensity uranium beams for replacing carbon-foil strippers. In this study, a high-beam-transmission charge-stripping system employing helium gas for U238 beams injected at 10.8MeV/u was developed and demonstrated for the first time. The charge-state evolution measured using helium in a thickness range of 0.24-1.83mg/cm2 is compared with theoretical predictions. Energy attenuation and energy spread due to the helium stripper are also investigated.

  10. Prospects for advanced electron cyclotron resonance and electron beam ion source charge breeding methods for EURISOL

    Energy Technology Data Exchange (ETDEWEB)

    Delahaye, P.; Jardin, P.; Maunoury, L.; Traykov, E.; Varenne, F. [GANIL, CEA/DSM-CNRS/IN2P3, Bd. Becquerel, BP 55027, 14076 Caen Cedex 05 (France); Galata, A.; Porcellato, A. M.; Prete, G. F. [INFN-Laboratori Nazionali di Legnaro, Viale dell' Universita 2, 35020 Legnaro, Padova (Italy); Angot, J.; Lamy, T.; Sortais, P.; Thuillier, T. [LPSC Grenoble, 53, rue des Martyrs, 38026 Grenoble Cedex (France); Ban, G. [LPC Caen, 6 bd Marechal Juin, 14050 Caen Cedex (France); Celona, L.; Lunney, D. [INFN-Laboratori Nazionali del Sud, via S.Sofia 62, 95125 Catania (Italy); Choinski, J.; Gmaj, P.; Jakubowski, A.; Steckiewicz, O. [Heavy Ion Laboratory, University of Warsaw, ul. Pasteura 5a, 02 093 Warsaw (Poland); Kalvas, T. [Department of Physics, University of Jyvaeskylae, PB 35 (YFL) 40351 Jyvaeskylae (Finland); and others

    2012-02-15

    As the most ambitious concept of isotope separation on line (ISOL) facility, EURISOL aims at producing unprecedented intensities of post-accelerated radioactive isotopes. Charge breeding, which transforms the charge state of radioactive beams from 1+ to an n+ charge state prior to post-acceleration, is a key technology which has to overcome the following challenges: high charge states for high energies, efficiency, rapidity and purity. On the roadmap to EURISOL, a dedicated R and D is being undertaken to push forward the frontiers of the present state-of-the-art techniques which use either electron cyclotron resonance or electron beam ion sources. We describe here the guidelines of this R and D.

  11. High intensity high charge state ion beam production with an evaporative cooling magnet ECRIS

    Energy Technology Data Exchange (ETDEWEB)

    Lu, W., E-mail: luwang@impcas.ac.cn; Qian, C.; Sun, L. T.; Zhang, X. Z.; Feng, Y. C.; Ma, B. H.; Zhao, H. W.; Zhan, W. L. [Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou 73000 (China); Fang, X.; Guo, J. W.; Yang, Y. [Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou 73000 (China); University of Chinese Academy of Sciences, Beijing 100049 (China); Xiong, B.; Ruan, L. [Institute of Electrical Engineering, CAS, Beijing 100190 (China); Xie, D. [Nuclear Science Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720 (United States)

    2016-02-15

    LECR4 (Lanzhou ECR ion source No. 4) is a room temperature electron cyclotron resonance ion source, designed to produce high current, high charge state ion beams for the SSC-LINAC injector (a new injector for sector separated cyclotron) at the Institute of Modern Physics. LECR4 also serves as a PoP machine for the application of evaporative cooling technology in accelerator field. To achieve those goals, LECR4 ECR ion source has been optimized for the operation at 18 GHz. During 2014, LECR4 ion source was commissioned at 18 GHz microwave of 1.6 kW. To further study the influence of injection stage to the production of medium and high charge state ion beams, in March 2015, the injection stage with pumping system was installed, and some optimum results were produced, such as 560 eμA of O{sup 7+}, 620 eμA of Ar{sup 11+}, 430 eμA of Ar{sup 12+}, 430 eμA of Xe{sup 20+}, and so on. The comparison will be discussed in the paper.

  12. Investigation of ion beam space charge compensation with a 4-grid analyzer

    Science.gov (United States)

    Ullmann, C.; Adonin, A.; Berezov, R.; Chauvin, N.; Delferrière, O.; Fils, J.; Hollinger, R.; Kester, O.; Senée, F.; Tuske, O.

    2016-02-01

    Experiments to investigate the space charge compensation of pulsed high-current heavy ion beams are performed at the GSI ion source text benches with a 4-grid analyzer provided by CEA/Saclay. The technical design of the 4-grid analyzer is revised to verify its functionality for measurements at pulsed high-current heavy ion beams. The experimental investigation of space charge compensation processes is needed to increase the performance and quality of current and future accelerator facilities. Measurements are performed directly downstream a triode extraction system mounted to a multi-cusp ion source at a high-current test bench as well as downstream the post-acceleration system of the high-current test injector (HOSTI) with ion energies up to 120 keV/u for helium and argon. At HOSTI, a cold or hot reflex discharge ion source is used to change the conditions for the measurements. The measurements were performed with helium, argon, and xenon and are presented. Results from measurements with single aperture extraction systems are shown.

  13. Investigation of ion beam space charge compensation with a 4-grid analyzer

    Energy Technology Data Exchange (ETDEWEB)

    Ullmann, C., E-mail: c.ullmann@gsi.de; Adonin, A.; Berezov, R.; Fils, J.; Hollinger, R.; Kester, O. [GSI, Darmstadt (Germany); Chauvin, N.; Delferrière, O.; Senée, F.; Tuske, O. [CEA, Saclay (France)

    2016-02-15

    Experiments to investigate the space charge compensation of pulsed high-current heavy ion beams are performed at the GSI ion source text benches with a 4-grid analyzer provided by CEA/Saclay. The technical design of the 4-grid analyzer is revised to verify its functionality for measurements at pulsed high-current heavy ion beams. The experimental investigation of space charge compensation processes is needed to increase the performance and quality of current and future accelerator facilities. Measurements are performed directly downstream a triode extraction system mounted to a multi-cusp ion source at a high-current test bench as well as downstream the post-acceleration system of the high-current test injector (HOSTI) with ion energies up to 120 keV/u for helium and argon. At HOSTI, a cold or hot reflex discharge ion source is used to change the conditions for the measurements. The measurements were performed with helium, argon, and xenon and are presented. Results from measurements with single aperture extraction systems are shown.

  14. Charged Particle, Photon Multiplicity, and Transverse Energy Production in High-Energy Heavy-Ion Collisions

    Directory of Open Access Journals (Sweden)

    Raghunath Sahoo

    2015-01-01

    Full Text Available We review the charged particle and photon multiplicities and transverse energy production in heavy-ion collisions starting from few GeV to TeV energies. The experimental results of pseudorapidity distribution of charged particles and photons at different collision energies and centralities are discussed. We also discuss the hypothesis of limiting fragmentation and expansion dynamics using the Landau hydrodynamics and the underlying physics. Meanwhile, we present the estimation of initial energy density multiplied with formation time as a function of different collision energies and centralities. In the end, the transverse energy per charged particle in connection with the chemical freeze-out criteria is discussed. We invoke various models and phenomenological arguments to interpret and characterize the fireball created in heavy-ion collisions. This review overall provides a scope to understand the heavy-ion collision data and a possible formation of a deconfined phase of partons via the global observables like charged particles, photons, and the transverse energy measurement.

  15. Surface Disorder of GaN Irradiated by Highly Charged Arq+-Ions

    Institute of Scientific and Technical Information of China (English)

    ZHANG Li-Qing; ZHANG Chong-Hong; YANG Yi-Tao; YAO Cun-Feng; LI Bing-Sheng; SUN You-Mei; SONG Shu-Jian

    2009-01-01

    The surface damage to gallium nitride films irradiated by Arq+ (6 < q < 16) ions at room temperature is studied by the atomic force microscopy.It is found that when charge state exceeds a threshold value,significant swelling was turned into obvious erosion in the irradiated region.The surface change of the irradiated region strongly depends on the charge state and ion fluence.On the other hand,surface change is less dependent on the kinetic energy nearly in the present experimental range (120keV≤Ek≤220 keV).For q≤14,surface of the irradiated region is covered with an amorphous layer,rough and bulgy.A step-up appears between the irradiated and un-irradiated region. Moreover,the step height and the surface roughness are functions of the ion dose and charge state,and increase with the increase of dose and charge state.Especially at and near boundary,a sharp bump like ridges in irradiated areas is observed,and there appear characteristic grooves in un-irradiated areas.For q=16,surface of the irradiated region was etched and erased.

  16. Reliable operation of the Brookhaven EBIS for highly charged ion production for RHIC and NSRL

    Science.gov (United States)

    Beebe, E.; Alessi, J.; Binello, S.; Kanesue, T.; McCafferty, D.; Morris, J.; Okamura, M.; Pikin, A.; Ritter, J.; Schoepfer, R.

    2015-01-01

    An Electron Beam Ion Source for the Relativistic Heavy Ion Collider (RHIC EBIS) was commissioned at Brookhaven in September 2010 and since then it routinely supplies ions for RHIC and NASA Space Radiation Laboratory (NSRL) as the main source of highly charged ions from Helium to Uranium. Using three external primary ion sources for 1+ injection into the EBIS and an electrostatic injection beam line, ion species at the EBIS exit can be switched in 0.2 s. A total of 16 different ion species have been produced to date. The length and the capacity of the ion trap have been increased by 20% by extending the trap by two more drift tubes, compared with the original design. The fraction of Au32+ in the EBIS Au spectrum is approximately 12% for 70-80% electron beam neutralization and 8 pulses operation in a 5 Hertz train and 4-5 s super cycle. For single pulse per super cycle operation and 25% electron beam neutralization, the EBIS achieves the theoretical Au32+ fractional output of 18%. Long term stability has been very good with availability of the beam from RHIC EBIS during 2012 and 2014 RHIC runs approximately 99.8%.

  17. Reliable operation of the Brookhaven EBIS for highly charged ion production for RHIC and NSRL

    Energy Technology Data Exchange (ETDEWEB)

    Beebe, E., E-mail: beebe@bnl.gov; Alessi, J., E-mail: beebe@bnl.gov; Binello, S., E-mail: beebe@bnl.gov; Kanesue, T., E-mail: beebe@bnl.gov; McCafferty, D., E-mail: beebe@bnl.gov; Morris, J., E-mail: beebe@bnl.gov; Okamura, M., E-mail: beebe@bnl.gov; Pikin, A., E-mail: beebe@bnl.gov; Ritter, J., E-mail: beebe@bnl.gov; Schoepfer, R., E-mail: beebe@bnl.gov [Brookhaven National Laboratory, Upton, NY 11973 (United States)

    2015-01-09

    An Electron Beam Ion Source for the Relativistic Heavy Ion Collider (RHIC EBIS) was commissioned at Brookhaven in September 2010 and since then it routinely supplies ions for RHIC and NASA Space Radiation Laboratory (NSRL) as the main source of highly charged ions from Helium to Uranium. Using three external primary ion sources for 1+ injection into the EBIS and an electrostatic injection beam line, ion species at the EBIS exit can be switched in 0.2 s. A total of 16 different ion species have been produced to date. The length and the capacity of the ion trap have been increased by 20% by extending the trap by two more drift tubes, compared with the original design. The fraction of Au{sup 32+} in the EBIS Au spectrum is approximately 12% for 70-80% electron beam neutralization and 8 pulses operation in a 5 Hertz train and 4-5 s super cycle. For single pulse per super cycle operation and 25% electron beam neutralization, the EBIS achieves the theoretical Au{sup 32+} fractional output of 18%. Long term stability has been very good with availability of the beam from RHIC EBIS during 2012 and 2014 RHIC runs approximately 99.8%.

  18. Dust charging processes with a Cairns-Tsallis distribution function with negative ions

    Energy Technology Data Exchange (ETDEWEB)

    Abid, A. A., E-mail: abidaliabid1@hotmail.com [Applied Physics Department, Federal Urdu University of Arts, Science and Technology, Islamabad Campus, Islamabad 45320 (Pakistan); Khan, M. Z., E-mail: mzk-qau@yahoo.com [Applied Physics Department, Federal Urdu University of Arts, Science and Technology, Islamabad Campus, Islamabad 45320 (Pakistan); Plasma Technology Research Center, Department of Physics, Faculty of Science, University of Malaya, Kuala Lumpur 50603 (Malaysia); Yap, S. L. [Plasma Technology Research Center, Department of Physics, Faculty of Science, University of Malaya, Kuala Lumpur 50603 (Malaysia); Terças, H., E-mail: hugo.tercas@tecnico.ul.pt [Physics of Information Group, Instituto de Telecomunicações, Av. Rovisco Pais, Lisbon 1049-001 (Portugal); Mahmood, S. [Science Place, University of Saskatchewan, Saskatoon, Saskatchewan S7N5A2 (Canada)

    2016-01-15

    Dust grain charging processes are presented in a non-Maxwellian dusty plasma following the Cairns-Tsallis (q, α)–distribution, whose constituents are the electrons, as well as the positive/negative ions and negatively charged dust grains. For this purpose, we have solved the current balance equation for a negatively charged dust grain to achieve an equilibrium state value (viz., q{sub d} = constant) in the presence of Cairns-Tsallis (q, α)–distribution. In fact, the current balance equation becomes modified due to the Boltzmannian/streaming distributed negative ions. It is numerically found that the relevant plasma parameters, such as the spectral indexes q and α, the positive ion-to-electron temperature ratio, and the negative ion streaming speed (U{sub 0}) significantly affect the dust grain surface potential. It is also shown that in the limit q → 1 the Cairns-Tsallis reduces to the Cairns distribution; for α = 0 the Cairns-Tsallis distribution reduces to pure Tsallis distribution and the latter reduces to Maxwellian distribution for q → 1 and α = 0.

  19. A novel method for thermodynamic study on binding of copper ion with Alzheimer's amyliod β peptide

    Institute of Scientific and Technical Information of China (English)

    BEHBEHANI G. Rezaei

    2009-01-01

    The interaction of Cu2+ with the first 16 residues of the Alzheimer's amyliod β peptide, Afl(1-16), was studied by employing isothermal titration calorimetry at pH 7.2 and 37℃ in aqueous solution. The Gholamreza Rezaei Behbehani (GRB) solvation model was used to reproduce the enthalpies of Cu2++Aβ(1-16) interaction over the whole Cu++concentrations. The binding parameters recovered from the solvation model were attributed to the structural change of Aβ(1-16) due to the metal ion interaction. It was found that there is a set of two identical and non interacting binding sites for Cu2+ ions. The molar enthalpy of binding is △H=27.895 kJ/mol. The association binding constants are 1.895 μM-1 and 1.891 μM-1 for the first and second binding sites respectively.

  20. Molecular modeling of the ion channel-like nanotube structure of amyloid β-peptide

    Institute of Scientific and Technical Information of China (English)

    JIAO Yong; YANG Pin

    2007-01-01

    The ion channel-like nanotube structure of the oligomers of amyloid β-peptide (Aβ) was first investigated by molecular modeling. The results reveal that the hydrogen bond net is one of the key factors to stabilize the structure. The hydrophobicity distribution mode of the side chains is in favor of the structure inserting into the bilayers and forming a hydrophilic pore. The lumen space is under the control of the negative potential, weaker but spreading continuously, to which the cation selectivity attributes; meanwhile, the alternate distribution of the stronger positive and negative potentials makes the electrostatic distribution of the structure framework balance, which is also one of the key factors stabilizing the structure. The results lay the theoretical foundation for illuminating the structure stability and the ion permeability, and give a clue to elucidating the molecular mechanism of Alzheimer's disease (AD) and designing novel drugs to prevent or reverse AD at the root.

  1. HITRAP - a facility for experiments on heavy highly charged ions and on antiprotons

    Energy Technology Data Exchange (ETDEWEB)

    Andjelkovic, Z; Barth, W; Brantjes, N P M; Braeuning-Demian, A; Dahl, L; Herfurth, F; Kester, O; Kluge, H J; Koszudowski, S; Kozhuharov, C; Maero, G; Noertershaeuser, W [GSI, Darmstadt (Germany); Birkl, G [Technische Universitaet Darmstadt (Germany); Blank, I; Goetz, S [Universitaet Freiburg (Germany); Blaum, K [Max-Planck Institut fuer Kernphysik, Heidelberg (Germany); Bodewits, E; Hoekstra, R [KVI Groningen (Netherlands); Church, D [Texas AM University, Texas (United States); Pfister, J, E-mail: w.quint@gsi.d [Universitaet Frankfurt (Germany)

    2009-11-01

    HITRAP is a facility for very slow highly-charged heavy ions at GSI. HITRAP uses the GSI relativistic ion beams, the Experimental Storage Ring ESR for electron cooling and deceleration to 4 MeV/u, and consists of a combination of an interdigital H-mode (IH) structure with a radiofrequency quadrupole structure for further deceleration to 6 keV/u, and a Penning trap for accumulation and cooling to low temperatures. Finally, ion beams with low emittance will be delivered to a large variety of atomic and nuclear physics experiments. Presently, HITRAP is in the commissioning phase. The deceleration of heavy-ion beam from the ESR storage ring to an energy of 500 keV/u with the IH structure has been demonstrated and studied in detail. The commissioning of the RFQ structure and the cooler trap is ongoing.

  2. Charge-exchange recombination spectroscopy of the plasma ion temperature at the T-10 tokamak

    Science.gov (United States)

    Krupin, V. A.; Tugarinov, S. N.; Barsukov, A. G.; Dnestrovskij, A. Yu.; Klyuchnikov, L. A.; Korobov, K. V.; Krasnyanskii, S. A.; Naumenko, N. N.; Nemets, A. R.; Sushkov, A. V.; Tilinin, G. N.

    2013-08-01

    Charge-exchange recombination spectroscopy (CXRS) based on a diagnostic neutral beam has been developed at the T-10 tokamak. The diagnostics allows one to measure the ion temperature profile in the cross section of the plasma column. In T-10 experiments, the measurement technique was adjusted and the elements of the CXRS diagnostics for ITER were tested. The used spectroscopic equipment makes it possible to reliably determine the ion temperature from the Doppler broadening of impurity lines (helium, carbon), as well as of the spectral lines of the working gas. The profiles of the plasma ion temperature in deuterium and helium discharges were measured at different plasma currents and densities, including with the use of active Doppler measurements of lines of different elements. The validity and reliability of ion temperature measurements performed by means of the developed CXRS diagnostics are analyzed.

  3. Adding high time resolution to charge-state-specific ion energy measurements for pulsed copper vacuum arc plasmas

    CERN Document Server

    Tanaka, Koichi; Zhou, Xue; Anders, André

    2015-01-01

    Charge-state-resolved ion energy-time-distributions of pulsed Cu arc plasma were obtained by using direct (time dependent) acquisition of the ion detection signal from a commercial ion mass-per-charge and energy-per-charge analyzer. We find a shift of energies of Cu2+, Cu3+ and Cu4+ ions to lower values during the first few hundred microseconds after arc ignition, which is evidence for particle collisions in the plasma. The generation of Cu1+ ions in the later part of the pulse, measured by the increase of Cu1+ signal intensity and an associated slight reduction of the mean charge state point to charge exchange reactions between ions and neutrals. At the very beginning of the pulse, when the plasma expands into vacuum and the plasma potential strongly fluctuates, ions with much higher energy (over 200 eV) were observed. Early in the pulse, the ion energies observed are approximately proportional to the ion charge state, and we conclude that the acceleration mechanism is primarily based on acceleration in an e...

  4. Fragmentation of amino acids induced by collisions with low-energy highly charged ions

    Science.gov (United States)

    Piekarski, D. G.; Maclot, S.; Domaracka, A.; Adoui, L.; Alcamí, M.; Rousseau, P.; Díaz-Tendero, S.; Huber, B. A.; Martín, F.

    2014-04-01

    Fragmentation of amino acids NH2-(CH2)n-COOH (n=1 glycine; n=2 β-alanine and n=3 γ-aminobutyric acid GABA) following collisions with slow highly charged ions has been studied in the gas phase by a combined experimental and theoretical approach. In the experiments, a multi-coincidence detection method was used to deduce the charge state of the molecules before fragmentation. Quantum chemistry calculations have been carried out in the basis of the density functional theory and ab initio molecular dynamics. The combination of both methodologies is essential to unambiguously unravel the different fragmentation pathways.

  5. The interactions of high-energy, highly charged Xe ions with buckyballs

    Energy Technology Data Exchange (ETDEWEB)

    Ali, R.; Berry, H.G.; Cheng, S. [and others

    1994-12-31

    Ionization and fragmentation have been measured for C{sub 60} molecules bombarded by highly charged (up to 35+) xenon ions with energies ranging up to 625 MeV. The observed mass distribution of positively charged fragments is explained in terms of a theoretical model indicating that the total interaction cross section contains roughly equal contributions from (a) excitation of the giant plasmon resonance, and (b) large-energy-transfer processes that lead to multiple fragmentation of the molecule. Preliminary results of measurements on VUV photons emitted in these interactions are also presented.

  6. Advances in Charge-Compensation in Secondary Ion Mass Spectrometry (SIMS)

    Science.gov (United States)

    Hervig, R. L.; Chen, J.; Schauer, S.; Stanley, B. D.; Moore, G. M.; Roggensack, K.

    2012-12-01

    In secondary ion mass spectrometry (SIMS), a sample is bombarded by a charged particle beam (the primary ion) and sputtered positive or negative secondary ions are analyzed in a mass spectrometer. When the target is not conducting (like many geological materials), sample charging can result in variable deflection of secondary ions away from the mass spectrometer and a low, unstable, or absent signal. Applying a thin conducting coat (e.g., C, Au) to polished samples is required, and if the primary ion beam is negatively-charged, the build-up of negative charge can be alleviated by secondary electrons draining to the conducting coat at the edge of the crater (if a positive potential is applied to the sample for the collection of positive secondary ions) or accelerated away from the crater (if a negative potential is applied for negative ion study). Unless the sputtered crater in the conducting coat becomes too large, sample charging can be kept at a controllable level, and high-quality trace element analyses and isotope ratios have been obtained using this technique over the past 3+ decades. When a positive primary beam is used, the resulting build-up of positive charge in the sample requires an electron gun to deliver sufficient negative charge to the sputtered crater. While there are many examples of successful analyses using this approach, the purpose of this presentation is to describe a very simple technique for aligning the electron gun on Cameca nf and 1270/80 SIMS instruments. This method allows reproducible analyses of insulating phases with a Cs+ primary beam and detection of negative secondary ions. Normally, the filament voltage on the E-gun is the same as the sample voltage; thus electrons do not strike the sample except when a positive charge has built up (e.g., in the analysis crater!). In this method, we decrease the sample voltage by 3 or more kV, so that the impact energy of the electrons is sufficient to induce a cathodoluminescent (CL) image on an

  7. Atomic physics with highly-charged ions at the future FAIR facility: A status report

    Energy Technology Data Exchange (ETDEWEB)

    Stoehlker, Th. [Gesellschaft fuer Schwerionenforschung (GSI), Darmstadt (Germany) and Institut fuer Kernphysik, University of Frankfurt (Germany)]. E-mail: t.stoehlker@gsi.de; Beyer, H.F. [Gesellschaft fuer Schwerionenforschung (GSI), Darmstadt (Germany); Braeuning, H. [Gesellschaft fuer Schwerionenforschung (GSI), Darmstadt (Germany); Braeuning-Demian, A. [Gesellschaft fuer Schwerionenforschung (GSI), Darmstadt (Germany); Brandau, C. [Gesellschaft fuer Schwerionenforschung (GSI), Darmstadt (Germany); Hagmann, S. [Institut fuer Kernphysik, University of Frankfurt (Germany); Kozhuharov, C. [Gesellschaft fuer Schwerionenforschung (GSI), Darmstadt (Germany); Kluge, H.J. [Gesellschaft fuer Schwerionenforschung (GSI), Darmstadt (Germany); Kuehl, Th. [Gesellschaft fuer Schwerionenforschung (GSI), Darmstadt (Germany); Liesen, D. [Gesellschaft fuer Schwerionenforschung (GSI), Darmstadt (Germany); Mann, R. [Gesellschaft fuer Schwerionenforschung (GSI), Darmstadt (Germany); Noertershaeuser, W. [Gesellschaft fuer Schwerionenforschung (GSI), Darmstadt (Germany); Quint, W. [Gesellschaft fuer Schwerionenforschung (GSI), Darmstadt (Germany); Schramm, U. [LMU, Munich (Germany); Schuch, R. [Stockholm University, Stockholm (Sweden)

    2007-08-15

    Key features of the future international accelerator Facility for Antiproton and Ion Research (FAIR) offer a range of new and challenging opportunities for atomic physics research in the realm of highly-charged heavy ions and exotic nuclei. Centred on use of FAIR, the Stored Particle Atomic Physics Research Collaboration (SPARC), organized in working groups, has been formed. A short report on the tasks and activities of the various SPARC working groups, devoted to the realization of experimental equipments and set-ups required to reach the physics goals is given.

  8. Atomic physics with highly-charged ions at the future FAIR facility. A status report

    Energy Technology Data Exchange (ETDEWEB)

    Stoehlker, T. [Gesellschaft fuer Schwerionenforschung, Darmstadt (Germany)]|[Frankfurt Univ. (Germany). Inst. fuer Kernphysik; Beyer, H.F.; Braeuning, H. [Gesellschaft fuer Schwerionenforschung, Darmstadt (DE)] (and others)

    2006-11-15

    The key features of the future international accelerator Facility for Antiproton and Ion Research (FAIR) offer a range of new and challenging opportunities for atomic physics research in the realm of highly-charged heavy ions and exotic nuclei. Centred on use of FAIR, the Stored Particle Atomic Physics Research Collaboration (SPARC), organized in working groups, has been formed. A short report on the tasks and activities of the various SPARC working groups, devoted to the realization of experimental equipments and setups required to reach the physics goals is given. (orig.)

  9. Simulations of ion velocity distribution functions taking into account both elastic and charge exchange collisions

    Science.gov (United States)

    Wang, Huihui; Sukhomlinov, Vladimir S.; Kaganovich, Igor D.; Mustafaev, Alexander S.

    2017-02-01

    Based on accurate representation of the He+-He angular differential scattering cross sections consisting of both elastic and charge exchange collisions, we performed detailed numerical simulations of the ion velocity distribution functions (IVDF) by Monte Carlo collision method (MCC). The results of simulations are validated by comparison with the experimental data of the ion mobility and the transverse diffusion. The IVDF simulation study shows that due to significant effect of scattering in elastic collisions IVDF cannot be separated into product of two independent IVDFs in the transverse and parallel to the electric field directions.

  10. X-ray characterization of surfaces irradiated with highly charged ions

    Energy Technology Data Exchange (ETDEWEB)

    Briand, J.P. [Laboratoire Kastler Brossel, Universite P. et M. Curie, Paris (France); Universite P. et M. Curie, Paris (France); Ion Surface Advanced Processes (ISAP) muE., 2 Square Francois Couperin, 92160 Antony (France)], E-mail: jpbriand920@aol.com; Benhachoum, M. [Universite P. et M. Curie, Paris (France)

    2009-02-15

    Highly charged ions (HCI) approaching, touching or penetrating dielectric surfaces extract many electrons of the solid leading to the formation of permanent surface modifications. The ions which capture the electrons in their outermost shells form hollow atoms which emit X-rays during their decay to the ground state. In this paper one presents experiments showing that these X-rays) allow diagnosing the electric nature of the surfaces. HCI while modifying the structure of surfaces may then also be used to diagnose these changes on line or off line.

  11. Collision of highly charged ion with clusters. Simulation study for electronic systems

    Energy Technology Data Exchange (ETDEWEB)

    Yabana, Kazuhiro [Niigata Univ. (Japan)

    1997-05-01

    Collision of highly charged ion with cluster, for example, collision of C{sub 60}-Ar{sup 8+} at E=80 KeV, was simulated by the time-dependence Kohn-Shame equation. The distribution of electron densities and the self-consistent potential were obtained. A part of C{sub 60} potential curve became depressed by the Coulomb force of ion, so that the saddle point was produced on the potential. The behavior of electron transfer on the saddle point was agreed with the classical barrier model. Time-dependent density functional method was explained. (S.Y.)

  12. Microcalorimeter/EBIT measurements of X-ray spectra of highly charged ions

    Energy Technology Data Exchange (ETDEWEB)

    Kink, I.; Porto, J.V.; Gillaspy, J.D. [National Inst. of Standards and Technology, Gaithersburg, MD (United States); Laming, J.M. [Naval Research Lab., Washington, DC (United States); Takacs, E. [Massachusetts Inst. of Tech., Cambridge, MA (United States); Silver, E.; Schnopper, H.; Bandler, S.R.; Brickhouse, N.; Murray, S. [Harvard-Smithsonian Center for Astrophysics, Cambridge, MA (United States); Barbera, M. [Osservatorio Astronomico G.S. Vaiana, Palermo (Italy); Madden, N.; Landis, D.; Beeman, J.; Haller, E.E. [Lawrence Berkeley National Lab., CA (United States)

    2001-07-01

    Spectra of highly charged Ar, Kr, Xe and Fe ions, produced in an electron beam ion trap (EBIT), have been recorded in a broad X-ray energy band (0.2 keV to 10 keV) with a microcalorimeter detector. The first analysis of the Kr spectra has been completed and most of the spectral lines have been identified as transitions of B- to Al-like Kr. Line intensity ratios of Fe XVII have been measured and compared with theoretical models. (orig.)

  13. Possibility of resonant capture of antiprotons by highly charged hydrogenlike ions

    Science.gov (United States)

    Genkin, M.; Lindroth, E.

    2009-02-01

    Recently, an experimental setup was proposed by Lapierre et al. [ Physics with ultra slow antiproton beams, AIP Conference Proceedings (2005), Vol. 793, p. 361] which would allow antiprotons and highly charged ions to collide repeatedly in an electron beam ion trap (EBIT) due to a nested trap configuration. As mentioned by the authors, such a setup may open the possibility to study antiproton capture into well-defined states through a resonant process which involves simultaneous electron excitation. In the present work, we give some theoretical estimations of the feasibility of that process.

  14. Creation of nanohillocks on CaF2 surfaces by single slow highly charged ions.

    Science.gov (United States)

    El-Said, A S; Heller, R; Meissl, W; Ritter, R; Facsko, S; Lemell, C; Solleder, B; Gebeshuber, I C; Betz, G; Toulemonde, M; Möller, W; Burgdörfer, J; Aumayr, F

    2008-06-13

    Upon impact on a solid surface, the potential energy stored in slow highly charged ions is primarily deposited into the electronic system of the target. By decelerating the projectile ions to kinetic energies as low as 150 x q eV, we find first unambiguous experimental evidence that potential energy alone is sufficient to cause permanent nanosized hillocks on the (111) surface of a CaF(2) single crystal. Our investigations reveal a surprisingly sharp and well-defined threshold of potential energy for hillock formation which can be linked to a solid-liquid phase transition.

  15. High-precision metrology of highly charged ions via relativistic resonance fluorescence.

    Science.gov (United States)

    Postavaru, O; Harman, Z; Keitel, C H

    2011-01-21

    Resonance fluorescence of laser-driven highly charged ions is investigated with regard to precisely measuring atomic properties. For this purpose an ab initio approach based on the Dirac equation is employed that allows for studying relativistic ions. These systems provide a sensitive means to test correlated relativistic dynamics, quantum electrodynamic phenomena and nuclear effects by applying x-ray lasers. We show how the narrowing of sidebands in the x-ray fluorescence spectrum by interference due to an additional optical driving can be exploited to determine atomic dipole or multipole moments to unprecedented accuracy.

  16. Decay rates of large-l Rydberg states of multiply charged ions approaching solid surfaces

    Science.gov (United States)

    Nedeljkovic, N. N.; Mirkovic, M. A.; Bozanic, D. K.

    2008-07-01

    We investigate the ionization of large-l multiply charged Rydberg ions approaching solid surfaces within the framework of decay model and applying the etalon equation method. The radial coordinate rho of the active electron is treated as a variational parameter and therefore the parabolic symmetry is preserved in this procedure. The complex eigenenergies are calculated from which the energy terms and the ionization rates are derived. We find that the large-l Rydberg states decay at approximately the same ion-surface distances as the low-l states oriented toward the vacuum and considerably closer to the surface comparing to the low-l states oriented towards the surface.

  17. Chronic Beryllium Disease: revealing the role of beryllium ion and small peptides binding to HLA-DP2.

    Science.gov (United States)

    Petukh, Marharyta; Wu, Bohua; Stefl, Shannon; Smith, Nick; Hyde-Volpe, David; Wang, Li; Alexov, Emil

    2014-01-01

    Chronic Beryllium (Be) Disease (CBD) is a granulomatous disorder that predominantly affects the lung. The CBD is caused by Be exposure of individuals carrying the HLA-DP2 protein of the major histocompatibility complex class II (MHCII). While the involvement of Be in the development of CBD is obvious and the binding site and the sequence of Be and peptide binding were recently experimentally revealed [1], the interplay between induced conformational changes and the changes of the peptide binding affinity in presence of Be were not investigated. Here we carry out in silico modeling and predict the Be binding to be within the acidic pocket (Glu26, Glu68 and Glu69) present on the HLA-DP2 protein in accordance with the experimental work [1]. In addition, the modeling indicates that the Be ion binds to the HLA-DP2 before the corresponding peptide is able to bind to it. Further analysis of the MD generated trajectories reveals that in the presence of the Be ion in the binding pocket of HLA-DP2, all the different types of peptides induce very similar conformational changes, but their binding affinities are quite different. Since these conformational changes are distinctly different from the changes caused by peptides normally found in the cell in the absence of Be, it can be speculated that CBD can be caused by any peptide in presence of Be ion. However, the affinities of peptides for Be loaded HLA-DP2 were found to depend of their amino acid composition and the peptides carrying acidic group at positions 4 and 7 are among the strongest binders. Thus, it is proposed that CBD is caused by the exposure of Be of an individual carrying the HLA-DP2*0201 allele and that the binding of Be to HLA-DP2 protein alters the conformational and ionization properties of HLA-DP2 such that the binding of a peptide triggers a wrong signaling cascade.

  18. Phospholipid membrane-interaction of a peptide from S4 segment of KvAP K(+) channel and the influence of the positive charges and an identified heptad repeat in its interaction with a S3 peptide.

    Science.gov (United States)

    Verma, Richa; Ghosh, Jimut Kanti

    2011-06-01

    In order to examine the ability of S3 and S4 segments of a Kv channel to interact with each other, two wild type short peptides derived from the S3 and S4 segments of KvAP channel were synthesized. Additionally, to evaluate the role of positive charges and an identified heptad repeat in the S4 segment, two S4 mutants of the same size as the S4 peptide, one with substitution of two leucine residues in the heptad repeat sequence by two alanine residues and in the other two arginine residues replaced by two glutamines residues were synthesized. Our results show that only the wild type S4 peptide, but not its mutants, self-assembled and permeabilized negatively charged phospholipid vesicles. The S3 peptide showed lesser affinity toward the same kind of lipid vesicles and localized onto its surface. However, the S3 peptide interacted only with S4 wild type peptide, but not with S4 mutants, and altered its localization onto the phospholipid membrane with increased resistance against the proteolytic enzyme, proteinase-k, in the presence of the S4 peptide. The results demonstrate that the selected, synthetic S3 and S4 segments possess the required amino acid sequences to interact with each other and show that the positive charges and the identified heptad repeat in S4 contribute to its assembly and interaction with S3 segment.

  19. Charge exchange and energy loss of slowed down heavy ions channeled in silicon crystals; Echanges de charge et perte d'energie d'ions lourds ralentis, canalises dans des cristaux de silicium

    Energy Technology Data Exchange (ETDEWEB)

    Testa, E

    2005-10-15

    This work is devoted to the study of charge exchange processes and of the energy loss of highly charged heavy ions channeled in thin silicon crystals. The two first chapters present the techniques of heavy ion channeling in a crystal, the ion-electron processes and the principle of our simulations (charge exchange and trajectory of channeled ions). The next chapters describe the two experiments performed at the GSI facility in Darmstadt, the main results of which follow: the probability per target atom of the mechanical capture (MEC) of 20 MeV/u U{sup 91+} ions as a function of the impact parameter (with the help of our simulations), the observation of the strong polarization of the target electron gas by the study of the radiative capture and the slowing down of Pb{sup 81+} ions from 13 to 8,5 MeV/u in channeling conditions for which electron capture is strongly reduced. (author)

  20. The reactivity study of peptide A3-capped gold and silver nanoparticles with heavy metal ions

    Energy Technology Data Exchange (ETDEWEB)

    Yang, Hongyu [New Energy Research Institute, School of Environment and Energy, South China University of Technology, Guangzhou Higher Education Mega Centre, Guangzhou 510006 (China); Tang, Zhenghua, E-mail: zhht@scut.edu.cn [New Energy Research Institute, School of Environment and Energy, South China University of Technology, Guangzhou Higher Education Mega Centre, Guangzhou 510006 (China); Guangdong Provincial Key Laboratory of Atmospheric Environment and Pollution Control, School of Environment and Energy, South China University of Technology, Guangzhou Higher Education Mega Centre, Guangzhou 510006 (China); Wang, Likai; Zhou, Weijia; Li, Ligui [New Energy Research Institute, School of Environment and Energy, South China University of Technology, Guangzhou Higher Education Mega Centre, Guangzhou 510006 (China); Zhang, Yongqing [Guangdong Provincial Key Laboratory of Atmospheric Environment and Pollution Control, School of Environment and Energy, South China University of Technology, Guangzhou Higher Education Mega Centre, Guangzhou 510006 (China); Chen, Shaowei, E-mail: shaowei@ucsc.edu [New Energy Research Institute, School of Environment and Energy, South China University of Technology, Guangzhou Higher Education Mega Centre, Guangzhou 510006 (China); Department of Chemistry and Biochemistry, University of California, 1156 High Street, Santa Cruz, CA 95064 (United States)

    2016-08-15

    Highlights: • Apparent color change upon the addition of Hg{sup 2+} or As{sup 3+} ions into A3-AuNPs solution. • Distinct color change of A3-AgNPs solution only in the presence of Hg{sup 2+} ions. • The Hg{sup 2+} concentration limit of A3-AgNPs about 40 times lower than A3-AuNPs. • Based on the DLS, TEM and XPS results, two reaction mechanisms have been proposed. - Abstract: Peptide A3-capped gold and silver nanoparticles were prepared by chemical reduction of metal salt precursors. The nanoparticles exhibited apparent but distinctly different color changes upon the addition of selected heavy metal ions. For gold nanoparticles, the solution color was found to change from red to blue in the presence of Hg{sup 2+} or As{sup 3+} ions, accompanied with broadening and a red-shift of the surface plasmon resonance peak. In contrast, silver nanoparticles showed an apparent color change from yellow to colorless only in the presence of Hg{sup 2+}, along with a blue-shift and diminishment of the surface plasmon resonance peak. The Hg{sup 2+} reaction concentration limit of silver nanoparticle was about 40 times lower than that of gold nanoparticle. Based on the dynamic light scattering, transmission electron microscopy and X-ray photoelectron spectroscopic results, the reaction mechanism has been proposed. Such a sensitive variation of the nanoparticle optical properties to selective ions might be exploited for ion detection for potential applications.

  1. Effect of Specific Adsorption of Ions on Electrokinetic Properties of Variable Charge Soils

    Institute of Scientific and Technical Information of China (English)

    ZHANGHONG; ZHANGXIAO-NIAN

    1991-01-01

    Studies were carried out by using electrophoretic method on the effects of the specific adsorption of the anions,such as SO42-,PO43-,and F- ions,the cations,such as Ca2+,Mn2+,Zn2+,and Cu2+,ions,and the anions and cations coexisting,such as Zn2+ and SO42= ions,on electrokinetic properties of the red soils as typical variable charge soils in China concerning variation in the specific ion species and concentrations,with an emphasis on the interaction between soil colloid surfaces and the ions in soil solutions.The results showed that the adsorption of specific ions led to a very pronounced decrease in zeta potentials of the soil colloids and a shift of the IEPs to lower values for specific anions,and an obvious increase in zeta potentials of the soil colloids and a shift of the IEPs to higher values for specific cations.Under circumstances of the specific anions and cations coexisting,for instance,Zn2+ and SO42- ions,the zeta potentials changed with values higher than the value for SO42- alone and lower than that for Zn2+ alone,and the IEP was between that for Zn2+ and that for SO42-.The adsorption of Zn2+ and Cu2+ ions resulted in a reversal of the zeta potentials,and appearance of two IEPs for Zn2+ and no IEP for Cu2+,exhibiting interesting special effects of these kinds of metal ions.The higher the concentrations of the ions,the greater the change of the electrokinetic properties.

  2. A Numerical Model for Ion Charge Distribution of Plasmas in Collisional Radiative Steady State

    Institute of Scientific and Technical Information of China (English)

    DUAN Yaoyong; GUO Yonghui; QIU Aici; KUAI Bin

    2009-01-01

    A numerical model for the charge state distribution of plasmas in a collisional ra-diative steady state (CRSS) is established by averaging over the atomic process rate coefficients in universal kinetic equations.It is used to calculate the mean ion charge and ion population for a given temperature and density of the plasmas,ranging from low Z to high Z elements.The comparisons of the calculated results with those of other non-local thermodynamic equilibrium kinetics codes show that this model possesses acceptable precision.Furthermore,the NLTE effects are investigated by virtue of the model,and the differences between CRSS and LTE models for low density plasmas are quite evident.

  3. The interactions of high-energy, highly-charged ions with fullerenes

    Energy Technology Data Exchange (ETDEWEB)

    Ali, R.; Berry, H.G.; Cheng, S. [and others

    1996-03-01

    In 1985, Robert Curl and Richard Smalley discovered a new form of carbon, the fullerene, C{sub 60}, which consists of 60 carbon atoms in a closed cage resembling a soccer ball. In 1990, Kritschmer et al. were able to make macroscopic quantities of fullerenes. This has generated intense activity to study the properties of fullerenes. One area of research involves collisions between fullerenes and atoms, ions or electrons. In this paper we describe experiments involving interactions between fullerenes and highly charged ions in which the center-of-mass energies exceed those used in other work by several orders of magnitude. The high values of projectile velocity and charge state result in excitation and decay processes differing significantly from those seen in studies 3 at lower energies. Our results are discussed in terms of theoretical models analogous to those used in nuclear physics and this provides an interesting demonstration of the unity of physics.

  4. Magnetic-dipole transitions in highly charged ions as a basis of ultraprecise optical clocks.

    Science.gov (United States)

    Yudin, V I; Taichenachev, A V; Derevianko, A

    2014-12-05

    We evaluate the feasibility of using magnetic-dipole (M1) transitions in highly charged ions as a basis of an optical atomic clockwork of exceptional accuracy. We consider a range of possibilities, including M1 transitions between clock levels of the same fine-structure and hyperfine-structure manifolds. In highly charged ions these transitions lie in the optical part of the spectra and can be probed with lasers. The most direct advantage of our proposal comes from the low degeneracy of clock levels and the simplicity of atomic structure in combination with negligible quadrupolar shift. We demonstrate that such clocks can have projected fractional accuracies below the 10^{-20}-10^{-21} level for all common systematic effects, such as blackbody radiation, Zeeman, ac-Stark, and quadrupolar shifts.

  5. l-distributions of the first electron transferred to multiply charged ions interacting with solid surfaces

    Science.gov (United States)

    Mirkovic, M. A.; Nedeljkovic, N. N.

    2008-07-01

    We analyze the angular momentum distributions of the electron transferred into the Rydberg states of multiply charged ions escaping the solid surfaces. The population probabilities are calculated within the framework of two-state-vector model; in the case of large values of the angular momentum quantum numbers l the model takes into account an importance of a wide space region around the projectile trajectory. The reionization of the previously populated states is also taken into account. The corresponding ionization rates are obtained by the appropriate etalon equation method; in the large-l case the radial electronic coordinate rho is treated as variational parameter. The theoretical predictions based on the proposed population-reionization mechanism fit the available beam-foil experimental data; the obtained large-l distributions are also used to elucidate the recent experimental data concerning the multiply charged Rydberg ions interacting with micro-capillary foil.

  6. Energy dissipation of highly charged ions interacting with solid surfaces; Energieeintrag langsamer hochgeladener Ionen in Festkoerperoberflaechen

    Energy Technology Data Exchange (ETDEWEB)

    Kost, D.

    2006-07-01

    Motivated by the incomplete scientific description of the relaxation of highly charged ions in front of solid surfaces and their energy balance, this thesis describes an advanced complementary study of determining deposited fractions and re-emitted fractions of the potential energy of highly charged ions. On one side, a calorimetric measurement setup is used to determine the retained potential energy and on the other side, energy resolved electron spectroscopy is used for measuring the reemitted energy due to secondary electron emission. In order to study the mechanism of energy retention in detail, materials with different electronic structures are investigated: Cu, n-Si, p-Si and SiO{sub 2}. In the case of calorimetry, a linear relationship between the deposited potential energy and the inner potential energy of the ions was determined. The total potential energy which stays in the solid remains almost constant at about (80 {+-} 10) %. Comparing the results of the Cu, n-Si and p-Si targets, no significant difference could be shown. Therefore we conclude that the difference in energy deposition between copper, n-doped Si and p-doped Si is below 10 %, which is significantly lower than using SiO{sub 2} targets. For this purpose, electron spectroscopy provides a complementary result. For Cu and Si surfaces, an almost linear increase of the re-emitted energy with increasing potential energy of the ion up to Ar{sup 7+} was also observed. The ratio of the re-emitted energy is about (10 {+-} 5) % of the total potential energy of the incoming ion, almost independent of the ion charge state. In contrast, an almost vanishing electron emission was observed for SiO{sub 2} and for charge states below q=7. For Ar{sup 8+} and Ar{sup 9+}, the electron emission increased due to the contribution of the projectile LMM Auger electrons and the re-emitted energy amounts up to 20 % for Cu and Si and around 10 % for SiO{sub 2}. These results are in good agreement with the calorimetric

  7. State of Charge Dependent Mechanical Integrity Behavior of 18650 Lithium-ion Batteries

    OpenAIRE

    Jun Xu; Binghe Liu; Dayong Hu

    2016-01-01

    Understanding the mechanism of mechanical deformation/stress-induced electrical failure of lithium–ion batteries (LIBs) is important in crash-safety design of power LIBs. The state of charge (SOC) of LIBs is a critical factor in their electrochemical performance; however, the influence of SOC with mechanical integrity of LIBs remains unclear. This study investigates the electrochemical failure behaviors of LIBs with various SOCs under both compression and bending loadings, underpinned by the ...

  8. Ion adsorption on oxides. Surface charge formation and cadmium binding on rutile and hematite.

    NARCIS (Netherlands)

    Fokkink, L.G.J.

    1987-01-01

    The adsorption of charge-determining (H +and OH -) and cadmium ions on rutile (TiO 2 ) and hematite (α-Fe 2 O 3 ) has been studied

  9. K-Vacancy Production in the Collision of Highly Charged Relativistic Ions With Heavy Atoms

    OpenAIRE

    Khabibullaev, P. K.

    2000-01-01

    A general expression for the cross section of the inelastic collision of relativistic highly charged ion with heavy (relativistic) atoms is obtained using the generalized eikonal approximation. In the ultrarelativistic limit, the obtained formula coincides with a known exact one. As an application of the obtained result, probability and cross section of the K-vacany production in the U92+ - U91+ collision are calculated.

  10. Lithium-Ion Battery Failure: Effects of State of Charge and Packing Configuration

    Science.gov (United States)

    2016-08-22

    geometries, abuse scenarios, and analysis techniques. In this report, different states of charge and packing configurations of a commercially available...15 1 1.0 Background and Motivation Lithium-ion batteries are a popular choice of power source for a variety of...military systems due to their promise of high power and high energy density. However, safety remains a significant concern, as battery failure leads

  11. Highly charged ions for atomic clocks, quantum information, and search for α variation.

    Science.gov (United States)

    Safronova, M S; Dzuba, V A; Flambaum, V V; Safronova, U I; Porsev, S G; Kozlov, M G

    2014-07-18

    We propose 10 highly charged ions as candidates for the development of next generation atomic clocks, quantum information, and search for α variation. They have long-lived metastable states with transition wavelengths to the ground state between 170-3000 nm, relatively simple electronic structure, stable isotopes, and high sensitivity to α variation (e.g., Sm(14+), Pr(10+), Sm(13+), Nd(10+)). We predict their properties crucial for the experimental exploration and highlight particularly attractive systems for these applications.

  12. Hydrogenlike highly charged ions for tests of the time independence of fundamental constants.

    Science.gov (United States)

    Schiller, S

    2007-05-04

    Hyperfine transitions in the electronic ground state of cold, trapped hydrogenlike highly charged ions have attractive features for use as frequency standards because the majority of systematic frequency shifts are smaller by orders of magnitude compared to many microwave and optical frequency standards. Frequency measurements of these transitions hold promise for significantly improved laboratory tests of local position invariance of the electron and quark masses.

  13. Crystal optics for hard-X-ray spectroscopy of highly charged ions

    OpenAIRE

    Beyer, H. F.; Attia, D.; Banas, D; Bigot, E. -O. Le; Bosch, F.; Dousse, Jean-Claude; Förster, E.; Gumberidze, A.; Hagmann, S.; Heß, S.; J. Hoszowska; Indelicato, P.; Jagodzinski, P.; Kozhuharov, Chr.; Krings, Th.

    2009-01-01

    A twin crystal-spectrometer assembly, operated in the focusing compensated asymmetric Laue geometry has been developed for accurate spectroscopy of fast highly charged heavy ions in the hard-X-ray region. Coupled to the focusing crystal optics is a specially developed two-dimensional position-sensitive X-ray detector which is necessary for retaining spectral resolution also for fast moving sources. We summarize the crystal optics and demonstrate the usefulness of the instrument for spectrosco...

  14. Effect of trapped ions and nonequilibrium electron-energy distribution function on dust-particle charging in gas discharges.

    Science.gov (United States)

    Sukhinin, G I; Fedoseev, A V; Antipov, S N; Petrov, O F; Fortov, V E

    2009-03-01

    Dust-particles charging in a low-pressure glow discharge was investigated theoretically. The dust-particle charge was found on the basis of a developed self-consistent model taking into account the nonequilibrium character of electron distribution function and the formation of an ionic coat composed of bound or trapped ions around the dust particle. The dust-particle charge, the radial distributions of electron density, free and trapped ions densities, and the distribution of electrostatic potential were found. It was shown that the non-Maxwellian electron distribution function and collisional flux of trapped ions both reduce the dust-particle charge in comparison with that received with the help of the conventional orbital motion limited (OML) model. However, in rare collisional regimes in plasma when the collisional flux is negligible, the formation of ionic coat around a particle leads to a shielding of the proper charge of a dust particle. In low-pressure experiments, it is only possible to detect the effective charge of a dust particle that is equal to the difference between the proper charge of the particle and the charge of trapped ions. The calculated effective dust particle charge is in fairly good agreement with the experimental measurements of dust-particle charge dependence on gas pressure.

  15. Safe and fast-charging Li-ion battery with long shelf life for power applications

    Science.gov (United States)

    Zaghib, K.; Dontigny, M.; Guerfi, A.; Charest, P.; Rodrigues, I.; Mauger, A.; Julien, C. M.

    We report a Li-ion battery that can be charged within few minutes, passes the safety tests, and has a very long shelf life. The active materials are nanoparticles of LiFePO 4 (LFP) and Li 4Ti 5O 12 (LTO) for the positive and negative electrodes, respectively. The LiFePO 4 particles are covered with 2 wt.% carbon to optimize the electrical conductivity, but not the Li 4Ti 5O 12 particles. The electrolyte is the usual carbonate solvent. The binder is a water-soluble elastomer. The "18650" battery prepared under such conditions delivers a capacity of 800 mAh. It retains full capacity after 20,000 cycles performed at charge rate 10C (6 min), discharge rate 5C (12 min), and retains 95% capacity after 30,000 cycles at charge rate 15C (4 mn) and discharge rate 5C both at 100% DOD and 100% SOC.

  16. Preliminary study for the detection of neutrons in heavy-ion collisions with charged particle detectors

    Directory of Open Access Journals (Sweden)

    Auditore L.

    2015-01-01

    Full Text Available At Laboratori Nazionali del Sud (LNS the CHIMERA 4π multidetector has been designed and setup to detect charged particles emitted in heavy ion collisions at intermediate energies. Properties and performances of CHIMERA have been widely demonstrated by published results obtained in the performed experiments. Moreover, in recent years, a new charged particle detector (ChPD for correlation studies (FARCOS has been designed, and recently a first prototype has been coupled to CHIMERA, in order to test performances in view of correlation measurements in coincidence with 4π detectors. Simultaneous neutrons and charged particles detection in heavy ion collisions represents an important experimental progress for future experiments to be performed with both stable and exotic nuclei. In order to investigate about this possibility, simple Monte Carlo simulations have been performed. Preliminary simulations have been carried out by means of MCNPX transport code to evaluate the perturbation effects, including cross-talk and time response, induced in CHIMERA and/or FARCOS Si-CsI(Tl telescopes on (typical 20MeV neutron signals coming froma typical reaction in heavy ion collisions at the Fermi energy. Moreover, first data analysis results of the INKIISSY experiment indicates sizable probability to detect neutrons by properly shadowing CHIMERA Si-CsI(Tl telescopes. Analysis is still in progress.

  17. Exploring relativistic many-body recoil effects in highly charged ions.

    Science.gov (United States)

    Orts, R Soria; Harman, Z; López-Urrutia, J R Crespo; Artemyev, A N; Bruhns, H; Martínez, A J González; Jentschura, U D; Keitel, C H; Lapierre, A; Mironov, V; Shabaev, V M; Tawara, H; Tupitsyn, I I; Ullrich, J; Volotka, A V

    2006-09-08

    The relativistic recoil effect has been the object of experimental investigations using highly charged ions at the Heidelberg electron beam ion trap. Its scaling with the nuclear charge Z boosts its contribution to a measurable level in the magnetic-dipole (M1) transitions of B- and Be-like Ar ions. The isotope shifts of 36Ar versus 40Ar have been detected with sub-ppm accuracy, and the recoil effect contribution was extracted from the 1s(2)2s(2)2p 2P(1/2) - 2P(3/2) transition in Ar13+ and the 1s(2)2s2p 3P1-3P2 transition in Ar14+. The experimental isotope shifts of 0.00123(6) nm (Ar13+) and 0.00120(10) nm (Ar14+) are in agreement with our present predictions of 0.00123(5) nm (Ar13+) and 0.00122(5) nm (Ar14+) based on the total relativistic recoil operator, confirming that a thorough understanding of correlated relativistic electron dynamics is necessary even in a region of intermediate nuclear charges.

  18. Spectroscopic Investigations of Highly Charged Ions using X-Ray Calorimeter Spectrometers

    Energy Technology Data Exchange (ETDEWEB)

    Thorn, Daniel Bristol [Univ. of California, Davis, CA (United States)

    2008-11-19

    Spectroscopy of K-shell transitions in highly charged heavy ions, like hydrogen-like uranium, has the potential to yield information about quantum electrodynamics (QED) in extremely strong nuclear fields as well as tests of the standard model, specifically parity violation in atomic systems. These measurements would represent the 'holy grail' in high-Z atomic spectroscopy. However, the current state-of-the-art detection schemes used for recording the K-shell spectra from highly charged heavy ions does not yet have the resolving power to be able to attain this goal. As such, to push the field of high-Z spectroscopy forward, new detectors must be found. Recently, x-ray calorimeter spectrometers have been developed that promise to make such measurements. In an effort to make the first steps towards attaining the 'holy grail', measurements have been performed with two x-ray calorimeter spectrometers (the XRS/EBIT and the ECS) designed and built at Goddard Space Flight Center in Greenbelt, MD. The calorimeter spectrometers have been used to record the K-shell spectra of highly charged ions produced in the SuperEBIT electron beam ion trap at Lawrence Livermore National Laboratory in Livermore, CA. Measurements performed with the XRS/EBIT calorimeter array found that the theoretical description of well-above threshold electron-impact excitation cross sections for hydrogen-like iron and nickel ions are correct. Furthermore, the first high-resolution spectrum of hydrogen-like through carbon-like praseodymium ions was recorded with a calorimeter. In addition, the new high-energy array on the EBIT Calorimeter Spectrometer (ECS) was used to resolve the K-shell x-ray emission spectrum of highly charged xenon ions, where a 40 ppm measurement of the energy of the K-shell resonance transition in helium-like xenon was achieved. This is the highest precision result, ever, for an element with such high atomic number. In addition, a first-of-its-kind measurement of

  19. Effect of dust charge variation on dust-acoustic solitary waves in a magnetized two-ion-temperature dusty plasma

    Institute of Scientific and Technical Information of China (English)

    薛具奎; 郎和

    2003-01-01

    The effect of dust charge variation on the dust-acoustic solitary structures is investigated in a warm magnetized two-ion-temperature dusty plasma consisting of a negatively and variably charged extremely massive dust fluid and ions of two different temperatures. It is shown that the dust charge variation as well as the presence of a second component of ions would modify the properties of the dust-acoustic solitary structures and may excite both dust-acoustic solitary holes (soliton waves with a density dip) and positive solitons (soliton waves with a density hump).

  20. A tool to evaluate correspondence between extraction ion chromatographic peaks and peptide-spectrum matches in shotgun proteomics experiments.

    Science.gov (United States)

    Ruse, Cristian I; Peacock, Samantha; Ghiban, Cornel; Rivera, Keith; Pappin, Darryl J; Leopold, Peter

    2013-08-01

    Chromatographed peptide signals form the basis of further data processing that eventually results in functional information derived from data-dependent bottom-up proteomics assays. We seek to rank LC/MS parent ions by the quality of their extracted ion chromatograms. Ranked extracted ion chromatograms act as an intuitive physical/chemical preselection filter to improve the quality of MS/MS fragment scans submitted for database search. We identify more than 4900 proteins when considering detector shifts of less than 7 ppm. High quality parent ions for which the database search yields no hits become candidates for subsequent unrestricted analysis for PTMs. Following this rational approach, we prioritize identification of more than 5000 spectrum matches from modified peptides and confirmed the presence of acetylaldehyde-modified His/Lys. We present a logical workflow that scores data-dependent selected ion chromatograms and leverage information about semianalytical LC/LC dimension prior to MS. Our method can be successfully used to identify unexpected modifications in peptides with excellent chromatography characteristics, independent of fragmentation pattern and activation methods. We illustrate analysis of ion chromatograms detected in two different modes by RF linear ion trap and electrostatic field orbitrap.

  1. Sequence analysis of peptides with biological activities using electrospray-Fourier trans- form ion cyclotron resonance mass spectrometry

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    The mass spectra of five peptides with biological activities are reported. All mass spectra were recorded using a 4.7-T Fourier transform ion cyclotron resonance mass spectrometer equipped with an external electrospray source. The accurate molecular weights for the five peptides prepared by solid phase synthesis were measured as 1765.9013, 1063.5420, 1092.5254, 820.3804 and 1078.5193, respectively. All the data were obtained with the external calibration. Differences between observed and theoretical monoisotopic molecular weights were in the (0.2-1.0)×10-6 range. The complete primary sequence for the five polypep-tides were determined using the method of in-source electro-spray ionization/collision induced dissociation (ESI/CID). All the intact y series ions and b series ions were obtained from various peptides respectively, thus determining the sequences of the five polypeptides. We found that the measured accura-te molecular mass of sample 4 was not in agreement with that expected from the planned synthetic peptide. The se-quences of sample 4 were determined through analysis. The corresponding accurate masses of b series ions and y series ions were gained, which proved that it was correct to re-determine the sequences.

  2. Peptide length, steric effects, and ion solvation govern zwitterion stabilization in barium-chelated di- and tripeptides

    NARCIS (Netherlands)

    R.C. Dunbar; J.D. Steill; N.C. Polfer; J. Oomens

    2009-01-01

    Infrared multiple-photon dissociation (IRMPD) spectroscopy has given infrared spectra of complexes of di- and tripeptides (AlaAla, AlaAlaAla, AlaPhe, PheAla) with singly and doubly charged metal ions (K+, Ca2+, Sr2+, and Ba2+). The switch between charge-solvated (CS) and salt-bridged zwitterion (SB)

  3. Peptide Length, Steric Effects, and Ion Solvation Govern Zwitterion Stabilization in Barium-Chelated Di- and Tripeptides

    NARCIS (Netherlands)

    Dunbar, R. C.; Steill, J. D.; Polfer, N. C.; Oomens, J.

    2009-01-01

    Infrared multiple-photon dissociation (IRMPD) spectroscopy has given infrared spectra of complexes of di- and tripeptides (AlaAla, AlaAlaAla, AlaPhe, PheAla) with singly and doubly charged metal ions (K+, Ca2+, Sr2+, and Ba2+). The switch between charge-solvated (CS) and salt-bridged zwitterion (SB)

  4. Status of deceleration and laser spectroscopy of highly charged ions at HITRAP

    Energy Technology Data Exchange (ETDEWEB)

    Andelkovic, Zoran, E-mail: z.andelkovic@gsi.de [GSI Helmholtzzentrum für Schwerionenforschung GmbH (Germany); Birkl, Gerhard [Technische Universität Darmstadt (Germany); Fedotova, Svetlana [GSI Helmholtzzentrum für Schwerionenforschung GmbH (Germany); Hannen, Volker [Universität Münster (Germany); Herfurth, Frank [GSI Helmholtzzentrum für Schwerionenforschung GmbH (Germany); König, Kristian [Technische Universität Darmstadt (Germany); Kotovskiy, Nikita [GSI Helmholtzzentrum für Schwerionenforschung GmbH (Germany); Maaß, Bernhard [Technische Universität Darmstadt (Germany); Vollbrecht, Jonas [Universität Münster (Germany); Murböck, Tobias [Technische Universität Darmstadt (Germany); Neidherr, Dennis [GSI Helmholtzzentrum für Schwerionenforschung GmbH (Germany); Nörtershäuser, Wilfried; Schmidt, Stefan; Vogel, Manuel [Technische Universität Darmstadt (Germany); Vorobjev, Gleb [GSI Helmholtzzentrum für Schwerionenforschung GmbH (Germany); Weinheimer, Christian [Universität Münster (Germany)

    2015-11-15

    Heavy few-electron ions are relatively simple systems in terms of electron structure and offer unique opportunities to conduct experiments under extremely large electromagnetic fields that exist around their nuclei. However, the preparation of highly charged ions (HCI) has remained the major challenge for experiments. As an extension of the existing GSI accelerator facility, the HITRAP facility was conceived as a multi-stage decelerator for HCI produced at high velocity. It is designed to prepare bunches of around 10{sup 5} HCI and to deliver them at low energies to various experiments. One of these experiments is SpecTrap, aiming for laser spectroscopy of trapped, cold HCI. We present the latest results on deceleration of ions in a radio-frequency quadrupole, synchrotron cooling of electrons in a trap as a preparation step for the prospective electron cooling of the HCI decelerated in HITRAP, as well as laser cooling of singly charged Mg ions for sympathetic cooling of HCI in SpecTrap.

  5. Electron Impact Excitation and Dielectronic Recombination of Highly Charged Tungsten Ions

    Directory of Open Access Journals (Sweden)

    Zhongwen Wu

    2015-11-01

    Full Text Available Electron impact excitation (EIE and dielectronic recombination (DR of tungsten ions are basic atomic processes in nuclear fusion plasmas of the International Thermonuclear Experimental Reactor (ITER tokamak. Detailed investigation of such processes is essential for modeling and diagnosing future fusion experiments performed on the ITER. In the present work, we studied total and partial electron-impact excitation (EIE and DR cross-sections of highly charged tungsten ions by using the multiconfiguration Dirac–Fock method. The degrees of linear polarization of the subsequent X-ray emissions from unequally-populated magnetic sub-levels of these ions were estimated. It is found that the degrees of linear polarization of the same transition lines, but populated respectively by the EIE and DR processes, are very different, which makes diagnosis of the formation mechanism of X-ray emissions possible. In addition, with the help of the flexible atomic code on the basis of the relativistic configuration interaction method, DR rate coefficients of highly charged W37+ to W46+ ions are also studied, because of the importance in the ionization equilibrium of tungsten plasmas under running conditions of the ITER.

  6. Dust ion-acoustic shock waves due to dust charge fluctuation in a superthermal dusty plasma

    Energy Technology Data Exchange (ETDEWEB)

    Alinejad, H., E-mail: alinejad@nit.ac.ir [Department of Physics, Faculty of Basic Science, Babol University of Technology, Babol 47148-71167 (Iran, Islamic Republic of); Research Institute for Fundamental Sciences (RIFS), University of Tabriz, 51664, Tabriz (Iran, Islamic Republic of); Tribeche, M. [Plasma Physics Group, Faculty of Sciences – Physics, University of Bab-Ezzouar (Algeria); Mohammadi, M.A. [Research Institute for Fundamental Sciences (RIFS), University of Tabriz, 51664, Tabriz (Iran, Islamic Republic of); Department of Atomic and Molecular Physics, Faculty of Physics, University of Tabriz, Tabriz (Iran, Islamic Republic of)

    2011-11-14

    The nonlinear propagation of dust ion-acoustic (DIA) shock waves is studied in a charge varying dusty plasma with electrons having kappa velocity distribution. We use hot ions with equilibrium streaming speed and a fast superthermal electron charging current derived from orbit limited motion (OLM) theory. It is found that the presence of superthermal electrons does not only significantly modify the basic properties of shock waves, but also causes the existence of shock profile with only positive potential in such plasma with parameter ranges corresponding to Saturn's rings. It is also shown that the strength and steepness of the shock waves decrease with increase of the size of dust grains and ion temperature. -- Highlights: ► The presence of superthermal electrons causes the existence of shock waves with only positive potential. ► The strength and steepness of the shock waves decrease with increase of the size of dust grains and ion temperature. ► As the electrons evolve toward their thermodynamic equilibrium, the shock structures are found with smaller amplitude.

  7. Measurements of atomic parameters of highly charged ions for interpreting astrophysical spectra

    Energy Technology Data Exchange (ETDEWEB)

    Brown, G.V.; Beiersdorfer, P.; Utter, S.B. [Lawrence Livermore National Lab., CA (United States); Boyce, K.R.; Gendreau, K.C.; Kelley, R.; Porter, F.S. [National Aeronautics and Space Administration, Greenbelt, MD (United States). Goddard Space Flight Center; Gu, M.F.; Kahn, S.M.; Savin, D.W. [Columbia Univ., New York, NY (United States); Gygax, J. [Swales and Associates, Beltsville, MD (United States)

    2001-07-01

    High-resolution X-ray spectra obtained by the Chandra X-ray Observatory and the X-ray Multi-Mirror Mission put new demands on atomic data including line positions, excitation cross sections, and radiative rates of cosmically-abundant highly-charged ions. To address this need, we are performing measurements of the line emission from ions of cosmically abundant elements. The data are obtained at the LLNL Electron Beam Ion Trap and focus on cross sections for electron-impact excitation, dielectronic recombination, and resonance excitation as well as atomic structure measurements. We find that ratios of the electron-impact excitation cross sections of singlet and triplet levels are systematically different from the calculated values in the case of many highly charged ions. This, for example, has a profound impact on inferring optical depths from solar and stellar atmospheres. Moreover, new line identifications are presented that resolve some long-standing puzzles in the interpretation of solar data, and the importance of resonance contributions to the spectral emission is assessed. (orig.)

  8. Nanostructuring CaF2 surfaces with slow highly charged ions

    Science.gov (United States)

    El-Said, A. S.; Wilhelm, R. A.; Heller, R.; Ritter, R.; Wachter, G.; Facsko, S.; Lemell, C.; Burgdörfer, J.; Aumayr, F.

    2014-04-01

    In recent years the potential of slow highly charged ions (HCI) as tools for nanostructuring purposes has received considerable attention and a wide range of material classes, from insulating ionic crystals, polymers and ultrathin films, to semiconducting and conducting substrates have been investigated regarding their response to individual HCI impact. For the majority of investigated materials, however, consistent theoretical modeling to supplement with experimental evidence and to satisfactorily explain the complete physical process from ion approach and impact to the formation of an individual nanostructure is still lacking. CaF2, from both an experimental and theoretical point of view, might be considered the most thoroughly investigated material. Combining results from numerous studies has allowed for the generation of a "phase diagram" for nanostructuring of CaF2 in dependence of ion beam parameters. This paves the way for a first unified picture, as implications from this phase diagram should be applicable to similar materials as well.

  9. A Collimation Scheme for Ions Changing Charge State in the LEIR Ring

    CERN Document Server

    Pasternak, Jaroslaw; Carli, Christian; Chanel, Michel; Mahner, Edgar

    2005-01-01

    Avalanche-like pressure rise and an associated decrease of the beam life-time, caused by (i) beam loss due to charge exchange interactions with rest gas molecules and (ii) electron capture from the electron beam of the electron cooler and (iii) ion impact induced outgassing, is a potential limitation for heavy ion accelerators. The vacuum system of the LEIR ring as to be upgraded to reach the dynamical vacuum pressure in the low 10-12 Torr range necessary to reach design performance. A collimation system to intercept lost ions by absorber blocks made of low beam-induced outgassing material will be installed. This paper reviews the collimation scheme and simulations of beam loss patterns around the ring.

  10. Soft x-ray laser spectroscopy on trapped highly charged ions at FLASH.

    Science.gov (United States)

    Epp, S W; López-Urrutia, J R Crespo; Brenner, G; Mäckel, V; Mokler, P H; Treusch, R; Kuhlmann, M; Yurkov, M V; Feldhaus, J; Schneider, J R; Wellhöfer, M; Martins, M; Wurth, W; Ullrich, J

    2007-05-04

    In a proof-of-principle experiment, we demonstrate high-resolution resonant laser excitation in the soft x-ray region at 48.6 eV of the 2 (2)S(1/2) to 2 (2)P(1/2) transition of Li-like Fe23+ ions trapped in an electron beam ion trap by using ultrabrilliant light from Free Electron Laser in Hamburg (FLASH). High precision spectroscopic studies of highly charged ions at this and upcoming x-ray lasers with an expected accuracy gain up to a factor of a thousand, become possible with our technique, thus potentially yielding fundamental insights, e.g., into basic aspects of QED.

  11. Laser spectroscopy on forbidden transitions in trapped highly charged Ar(13+) ions.

    Science.gov (United States)

    Mäckel, V; Klawitter, R; Brenner, G; Crespo López-Urrutia, J R; Ullrich, J

    2011-09-30

    We demonstrate resonant fluorescence laser spectroscopy in highly charged ions (HCI) stored in an electron beam ion trap by investigating the dipole-forbidden 1s(2)2s(2)2p (2)P(3/2)-(2)P(1/2) transition in boronlike Ar(13+) ions. Forced evaporative cooling yielded a high resolving power, resulting in an accurate wavelength determination to λ=441.255 68(26)  nm. By applying stronger cooling and two-photon excitation, new optical frequency standards based upon ultrastable transitions in such HCI could be realized in the future, e.g., for the search of time variations of the fine-structure constant.

  12. Multi-reference configuration-interaction calculations on multiply charged ions of carbon monosulfide

    Institute of Scientific and Technical Information of China (English)

    Yan Bing; Zhang Yu-Juan

    2013-01-01

    The potential energy curves for neutrals and multiply charged ions of carbon monosulfide are computed with highly correlated multi-reference configuration interaction wavefunctions.The correlations of inner-shell electrons with the scalar relativistic effects are included in the present computations.The spectroscopic constants,dissociation energies,ionization energies for ground and low-lying excited states together with corresponding electronic configurations of ions are obtained,and a good agreement between the present work and existing experiments is found.No theoretical evidence is found for the adiabatically stable CSq+ (q > 2) ions according to the present ab initio calculations.The calculated values for lst-6th ionization energies are 11.25,32.66,64.82,106.25,159.75,and 224.64 eV,respectively.The kinetic energy release data of fragments are provided by the present work for further experimental comparisons.

  13. Infrared Ion Spectroscopy at Felix: Applications in Peptide Dissociation and Analytical Chemistry

    Science.gov (United States)

    Oomens, Jos

    2016-06-01

    Infrared free electron lasers such as those in Paris, Berlin and Nijmegen have been at the forefront of the development of infrared ion spectroscopy. In this contribution, I will give an overview of new developments in IR spectroscopy of stored ions at the FELIX Laboratory. In particular, I will focus on recent developments made possible by the coupling of a new commercial ion trap mass spectrometer to the FELIX beamline. The possibility to record IR spectra of mass-selected molecular ions and their reaction products has in recent years shed new light on our understanding of collision induced dissociation (CID) reactions of protonated peptides in mass spectrometry (MS). We now show that it is possible to record IR spectra for the products of electron transfer dissociation (ETD) reactions [M + nH]n+ + A- → [M + nH](n-1)+ + A → {dissociation of analyte} These reactions are now widely used in novel MS-based protein sequencing strategies, but involve complex radical chemistry. The spectroscopic results allow stringent verification of computationally predicted product structures and hence reaction mechanisms and H-atom migration. The sensitivity and high dynamic range of a commercial mass spectrometer also allows us to apply infrared ion spectroscopy to analytes in complex "real-life" mixtures. The ability to record IR spectra with the sensitivity of mass-spectrometric detection is unrivalled in analytical sciences and is particularly useful in the identification of small (biological) molecules, such as in metabolomics. We report preliminary results of a pilot study on the spectroscopic identification of small metabolites in urine and plasma samples.

  14. Studies on the Interactions of Copper and Zinc Ions with β-Amyloid Peptides by a Surface Plasmon Resonance Biosensor

    Directory of Open Access Journals (Sweden)

    He Tian

    2012-09-01

    Full Text Available The aggregation of β-amyloid peptide (Aβ into fibrils plays an important role in the pathogenesis of Alzheimer’s disease (AD. Metal ions including copper and zinc are closely connected to the precipitation and toxicity of Aβ. In this study, a surface plasmon resonance (SPR biosensor was constructed to investigate the interactions between Aβ and metal ions. Aβ peptide was immobilized on the SPR chip surface through a preformed alkanethiol self-assembled monolayer (SAM. Our observations indicate that the immobilized Aβ undergoes a conformational change upon exposure to the metal ions. A difference in metal binding affinity between Aβ1–28 and Aβ1–42 was also detected. The results suggest that SPR is an effective method to characterize the interactions between Aβ and metal ions.

  15. Studies on the interactions of copper and zinc ions with β-amyloid peptides by a surface plasmon resonance biosensor.

    Science.gov (United States)

    Yao, Fujun; Zhang, Ruiping; Tian, He; Li, Xiangjun

    2012-01-01

    The aggregation of β-amyloid peptide (Aβ) into fibrils plays an important role in the pathogenesis of Alzheimer's disease (AD). Metal ions including copper and zinc are closely connected to the precipitation and toxicity of Aβ. In this study, a surface plasmon resonance (SPR) biosensor was constructed to investigate the interactions between Aβ and metal ions. Aβ peptide was immobilized on the SPR chip surface through a preformed alkanethiol self-assembled monolayer (SAM). Our observations indicate that the immobilized Aβ undergoes a conformational change upon exposure to the metal ions. A difference in metal binding affinity between Aβ(1-28) and Aβ(1-42) was also detected. The results suggest that SPR is an effective method to characterize the interactions between Aβ and metal ions.

  16. Introducing charge transfer functionality into prebiotically relevant β-sheet peptide fibrils.

    Science.gov (United States)

    Ivnitski, Denis; Amit, Moran; Rubinov, Boris; Cohen-Luria, Rivka; Ashkenasy, Nurit; Ashkenasy, Gonen

    2014-06-28

    Incorporation of naphthalene diimide moieties as side chains of short amphiphilic peptide results in the formation of fibrils that exhibit substantial intermolecular π-stacking interactions. These interactions can be manipulated without affecting the structure. The new system is suggested as a first step towards functional self-synthesizing materials.

  17. Supercharging with m-nitrobenzyl alcohol and propylene carbonate: forming highly charged ions with extended, near-linear conformations.

    Science.gov (United States)

    Going, Catherine C; Williams, Evan R

    2015-04-07

    The effectiveness of the supercharging reagents m-nitrobenzyl alcohol (m-NBA) and propylene carbonate at producing highly charged protein ions in electrospray ionization is compared. Addition of 5% m-NBA or 15% propylene carbonate increases the average charge of three proteins by ∼21% or ∼23%, respectively, when these ions are formed from denaturing solutions (water/methanol/acetic acid). These results indicate that both reagents are nearly equally effective at supercharging when used at their optimum concentrations. A narrowing of the charge state distribution occurs with both reagents, although this effect is greater for propylene carbonate. Focusing the ion signal into fewer charge states has the advantage of improving sensitivity. The maximum charge state of ubiquitin formed with propylene carbonate is 21+, four charges higher than previously reported. Up to nearly 30% of all residues in a protein can be charged, and the collisional cross sections of the most highly charged ions of both ubiquitin and cytochrome c formed with these supercharging reagents were measured for the first time and found to be similar to those calculated for theoretical highly extended, linear or near-linear conformations. Under native supercharging conditions, m-NBA is significantly more effective at producing high charge states than propylene carbonate.

  18. Thermal Analysis of a Fast Charging Technique for a High Power Lithium-Ion Cell

    Directory of Open Access Journals (Sweden)

    Victor Manuel García Fernández

    2016-11-01

    Full Text Available The cell case temperature versus time profiles of a multistage fast charging technique (4C-1C-constant voltage (CV/fast discharge (4C in a 2.3 Ah cylindrical lithium-ion cell are analyzed using a thermal model. Heat generation is dominated by the irreversible component associated with cell overpotential, although evidence of the reversible component is also observed, associated with the heat related to entropy from the electrode reactions. The final charging stages (i.e., 1C-CV significantly reduce heat generation and cell temperature during charge, resulting in a thermally safe charging protocol. Cell heat capacity was determined from cell-specific heats and the cell materials’ thickness. The model adjustment of the experimental data during the 2 min resting period between discharge and charge allowed us to calculate both the time constant of the relaxation process and the cell thermal resistance. The obtained values of these thermal parameters used in the proposed model are almost equal to those found in the literature for the same cell model, which suggests that the proposed model is suitable for its implementation in thermal management systems.

  19. Heavy Inertial Confinement Energy: Interactions Involoving Low charge State Heavy Ion Injection Beams

    Energy Technology Data Exchange (ETDEWEB)

    DuBois, Robert D

    2006-04-14

    During the contract period, absolute cross sections for projectile ionization, and in some cases for target ionization, were measured for energetic (MeV/u) low-charge-state heavy ions interacting with gases typically found in high and ultra-high vacuum environments. This information is of interest to high-energy-density research projects as inelastic interactions with background gases can lead to serious detrimental effects when intense ion beams are accelerated to high energies, transported and possibly confined in storage rings. Thus this research impacts research and design parameters associated with projects such as the Heavy Ion Fusion Project, the High Current and Integrated Beam Experiments in the USA and the accelerator upgrade at GSI-Darmstadt, Germany. Via collaborative studies performed at GSI-Darmstadt, at the University of East Carolina, and Texas A&M University, absolute cross sections were measured for a series of collision systems using MeV/u heavy ions possessing most, or nearly all, of their bound electrons, e.g., 1.4 MeV/u Ar{sup +}, Xe{sup 3+}, and U{sup 4,6,10+}. Interactions involving such low-charge-state heavy ions at such high energies had never been previously explored. Using these, and data taken from the literature, an empirical model was developed for extrapolation to much higher energies. In order to extend our measurements to much higher energies, the gas target at the Experimental Storage Ring in GSI-Darmstadt was used. Cross sections were measured between 20 and 50 MeV/u for U{sup 28+}- H{sub 2} and - N{sub 2}, the primary components found in high and ultra-high vacuum systems. Storage lifetime measurements, information inversely proportional to the cross section, were performed up to 180 MeV/u. The lifetime and cross section data test various theoretical approaches used to calculate cross sections for many-electron systems. Various high energy density research projects directly benefit by this information. As a result, the general

  20. New supercharging reagents produce highly charged protein ions in native mass spectrometry.

    Science.gov (United States)

    Going, Catherine C; Xia, Zijie; Williams, Evan R

    2015-11-07

    The effectiveness of two new supercharging reagents for producing highly charged ions by electrospray ionization (ESI) from aqueous solutions in which proteins have native structures and reactivities were investigated. In aqueous solution, 2-thiophenone and 4-hydroxymethyl-1,3-dioxolan-2-one (HD) at a concentration of 2% by volume can increase the average charge of cytochrome c and myoglobin by up to 163%, resulting in even higher charge states than those that are produced from water/methanol/acid solutions in which these proteins are denatured. The greatest extent of supercharging occurs in pure water, but these supercharging reagents are also highly effective in aqueous solutions containing 200 mM ammonium acetate buffer commonly used in native mass spectrometry (MS). These reagents are less effective supercharging reagents than m-nitrobenzyl alcohol (m-NBA) and propylene carbonate (PC) when ions are formed from water/methanol/acid. The extent to which loss of the heme group from myoglobin occurs is related to the extent of supercharging. Results from guanidine melts of cytochrome c monitored with tryptophan fluorescence show that the supercharging reagents PC, sulfolane and HD are effective chemical denaturants in solution. These results provide additional evidence for the role of protein structural changes in the electrospray droplet as the primary mechanism for supercharging with these reagents in native MS. These results also demonstrate that for at least some proteins, the formation of highly charged ions from native MS is no longer a significant barrier for obtaining structural information using conventional tandem MS methods.

  1. Atomic data for neutron-capture elements III. Charge transfer rate coefficients for low-charge ions of Ge, Se, Br, Kr, Rb, and Xe

    CERN Document Server

    Sterling, N C

    2011-01-01

    We present total and final-state resolved charge transfer (CT) rate coefficients for low-charge Ge, Se, Br, Kr, Rb, and Xe ions reacting with neutral hydrogen over the temperature range 10^2--10^6 K. Each of these elements has been detected in ionized astrophysical nebulae, particularly planetary nebulae. CT rate coefficients are a key ingredient for the ionization equilibrium solutions needed to determine total elemental abundances from those of the observed ions. A multi-channel Landau Zener approach was used to compute rate coefficients for projectile ions with charges q=2-5, and for singly-charged ions the Demkov approximation was utilized. Our results for five-times ionized species are lower limits, due to the incompleteness of level energies in the NIST database. In addition, we computed rate coefficients for charge transfer ionization reactions between the neutral species of the above six elements and ionized hydrogen. The resulting total and state-resolved CT rate coefficients are tabulated and availa...

  2. High resolution main-ion charge exchange spectroscopy in the DIII-D H-mode pedestal

    Science.gov (United States)

    Grierson, B. A.; Burrell, K. H.; Chrystal, C.; Groebner, R. J.; Haskey, S. R.; Kaplan, D. H.

    2016-11-01

    A new high spatial resolution main-ion (deuterium) charge-exchange spectroscopy system covering the tokamak boundary region has been installed on the DIII-D tokamak. Sixteen new edge main-ion charge-exchange recombination sightlines have been combined with nineteen impurity sightlines in a tangentially viewing geometry on the DIII-D midplane with an interleaving design that achieves 8 mm inter-channel radial resolution for detailed profiles of main-ion temperature, velocity, charge-exchange emission, and neutral beam emission. At the plasma boundary, we find a strong enhancement of the main-ion toroidal velocity that exceeds the impurity velocity by a factor of two. The unique combination of experimentally measured main-ion and impurity profiles provides a powerful quasi-neutrality constraint for reconstruction of tokamak H-mode pedestals.

  3. Oxaliplatin neurotoxicity – no general ion channel surface-charge effect

    Directory of Open Access Journals (Sweden)

    Ehrsson Hans

    2009-01-01

    Full Text Available Abstract Background Oxaliplatin is a platinum-based chemotherapeutic drug. Neurotoxicity is the dose-limiting side effect. Previous investigations have reported that acute neurotoxicity could be mediated via voltage-gated ion channels. A possible mechanism for some of the effects is a modification of surface charges around the ion channel, either because of chelation of extracellular Ca2+, or because of binding of a charged biotransformation product of oxaliplatin to the channel. To elucidate the molecular mechanism, we investigated the effects of oxaliplatin and its chloride complex [Pt(dachoxCl]- on the voltage-gated Shaker K channel expressed in Xenopus oocytes. The recordings were made with the two-electrode and the cut-open oocyte voltage clamp techniques. Conclusion To our surprise, we did not see any effects on the current amplitudes, on the current time courses, or on the voltage dependence of the Shaker wild-type channel. Oxaliplatin is expected to bind to cysteines. Therefore, we explored if there could be a specific effect on single (E418C and double-cysteine (R362C/F416C mutated Shaker channels previously shown to be sensitive to cysteine-specific reagents. Neither of these channels were affected by oxaliplatin. The clear lack of effect on the Shaker K channel suggests that oxaliplatin or its monochloro complex has no general surface-charge effect on the channels, as has been suggested before, but rather a specific effect to the channels previously shown to be affected.

  4. Low-temperature charging of lithium-ion cells Part II: Model reduction and application

    Science.gov (United States)

    Remmlinger, Jürgen; Tippmann, Simon; Buchholz, Michael; Dietmayer, Klaus

    2014-05-01

    Lithium-ion cells, especially when used in electric vehicles at varying operation conditions, require a sophisticated battery management to ensure an optimal operation regarding operation limits, performance, and maximum lifetime. In some cases, the best trade-off between these conflictive goals can only be reached by considering internal, non-measurable cell characteristics. This article presents a data-driven model-reduction method for a strict electrochemical model. The model describes the charging process of a lithium-ion cell and possibly occurring degradation effects in a large temperature range and is presented in Part I of this contribution. The model-reduction process is explained in detail, and the gained model is compared to the original electrochemical model showing a very high approximation quality. This reduced model offers a very low computation complexity and is therefore suitable for the implementation in a battery management system (BMS). Based on this model, an advanced charging strategy is presented and evaluated for possible reductions in charging times especially at low temperatures.

  5. Multiple sampling ionization chamber (MUSIC) for measuring the charge of relativistic heavy ions

    Energy Technology Data Exchange (ETDEWEB)

    Christie, W.B.; Romero, J.L.; Brady, F.P.; Tull, C.E.; Castaneda, C.M.; Barasch, E.F.; Webb, M.L.; Drummond, J.R.; Crawford, H.J.; Flores, I.

    1987-04-01

    A large area (1 m x 2 m) multiple sampling ionization chamber (MUSIC) has been constructed and tested. The MUSIC detector makes multiple measurements of energy 'loss', dE/dx, for a relativistic heavy ion. Given the velocity, the charge of the ion can be extracted from the energy loss distributions. The widths of the distributions we observe are much narrower than predicted by Vavilov's theory for energy loss while agreeing well with the theory of Badhwar which deals with the energy deposited. The versatile design of MUSIC allows a variety of anode configurations which results in a large dynamic range of charge. In our tests to date we have observed charge resolutions of 0.25e fwhm for 727 MeV/nucleon /sup 40/Ar and 0.30e fwhm for 1.08 GeV/nucleon /sup 139/La and /sup 139/La fragments. Vertical position and multiple track determination are obtained by using time projection chamber electronics. Preliminary tests indicate that the position resolution is also very good with sigmaapprox. =100 ..mu..m.

  6. Kinetic theory and atomic physics corrections for determination of ion velocities from charge-exchange spectroscopy

    Science.gov (United States)

    Muñoz Burgos, J. M.; Burrell, K. H.; Solomon, W. M.; Grierson, B. A.; Loch, S. D.; Ballance, C. P.; Chrystal, C.

    2013-09-01

    Charge-exchange spectroscopy is a powerful diagnostic tool for determining ion temperatures, densities and rotational velocities in tokamak plasmas. This technique depends on detailed understanding of the atomic physics processes that affect the measured apparent velocities with respect to the true ion rotational velocities. These atomic effects are mainly due to energy dependence of the charge-exchange cross-sections, and in the case of poloidal velocities, due to gyro-motion of the ion during the finite lifetime of the excited states. Accurate lifetimes are necessary for correct interpretation of measured poloidal velocities, specially for high density plasma regimes on machines such as ITER, where l-mixing effects must be taken into account. In this work, a full nl-resolved atomic collisional radiative model coupled with a full kinetic calculation that includes the effects of electric and magnetic fields on the ion gyro-motion is presented for the first time. The model directly calculates from atomic physics first principles the excited state lifetimes that are necessary to evaluate the gyro-orbit effects. It is shown that even for low density plasmas where l-mixing effects are unimportant and coronal conditions can be assumed, the nl-resolved model is necessary for an accurate description of the gyro-motion effects to determine poloidal velocities. This solution shows good agreement when compared to three QH-mode shots on DIII-D, which contain a wide range of toroidal velocities and high ion temperatures where greater atomic corrections are needed. The velocities obtained from the model are compared to experimental velocities determined from co- and counter-injection of neutral beams on DIII-D.

  7. Charge Transfer Between Quantum Dots and Peptide-Coupled Redox Complexes

    Science.gov (United States)

    2009-01-01

    number of intact Ru-peptides per QD-conjugate following enzymatic digestion. This also allowed the derivation of standard Michaelis - Menten kinetic values...in each case the kinetic data agreed reasonably with the expected val- ues.2 Conclusions: We combined the electrochemi- cal properties of redox...locity versus increasing chymotrypsin concentration in the presence and absence of a specific chymostatin inhibitor. The changes in kinetic parameters

  8. Ionic Strength, Surface Charge, and Packing Density Effects on the Properties of Peptide Self-Assembled Monolayers.

    Science.gov (United States)

    Leo, Norman; Liu, Juan; Archbold, Ian; Tang, Yongan; Zeng, Xiangqun

    2017-02-28

    The various environmental parameters of packing density, ionic strength, and solution charge were examined for their effects on the properties of the immobilized peptide mimotope CH19 (CGSGSGSQLGPYELWELSH) that binds with the therapeutic antibody Trastuzumab (Herceptin) on a gold substrate. The immobilization of CH19 onto gold was examined with a quartz crystal microbalance (QCM). The QCM data showed the presence of intermolecular interactions resulting in the increase of viscoelastic properties of the peptide self-assembled monolayer (SAM). The CH19 SAM was diluted with CS7 (CGSGSGS) to decrease the packing density as CH19/CS7. The packing density and ionic strength parameters were evaluated by atomic force microscopy (AFM), ellipsometry, and QCM. AFM and ellipsometry showed a distinct conformational difference between CH19 and CH19/CS7, indicating a relationship between packing density and conformational state of the immobilized peptide. The CH19 SAM thickness was 40 Å with a rough topology, while the CH19/CS7 SAM thickness was 20 Å with a smooth topology. The affinity studies showed that the affinity of CH19 and CH19/CS7 to Trastuzumab were both on the order of 10(7) M(-1) in undiluted PBS buffer, while the dilution of the buffer by 1000× increased both SAMs affinities to Trastuzumab to the order of 10(15) M(-2) and changed the binding behavior from noncooperative to cooperative binding. This indicated that ionic strength had a more pronounced effect on binding properties of the CH19 SAM than packing density. Electrochemical impedance spectroscopy (EIS) was conducted on the CH19/CS7 SAM, which showed an increase in impedance after each EIS measurement cycle. Cyclic voltammetry on the CH19/CS7 SAM decreased impedance to near initial values. The impact of the packing density, buffer ionic strength, and local charge perturbation of the peptide SAM properties was interpreted based on the titratable sites in CH19 that could participate in the proton transfer and

  9. State of Charge Estimation of Lithium-Ion Batteries Using an Adaptive Cubature Kalman Filter

    Directory of Open Access Journals (Sweden)

    Bizhong Xia

    2015-06-01

    Full Text Available Accurate state of charge (SOC estimation is of great significance for a lithium-ion battery to ensure its safe operation and to prevent it from over-charging or over-discharging. However, it is difficult to get an accurate value of SOC since it is an inner sate of a battery cell, which cannot be directly measured. This paper presents an Adaptive Cubature Kalman filter (ACKF-based SOC estimation algorithm for lithium-ion batteries in electric vehicles. Firstly, the lithium-ion battery is modeled using the second-order resistor-capacitor (RC equivalent circuit and parameters of the battery model are determined by the forgetting factor least-squares method. Then, the Adaptive Cubature Kalman filter for battery SOC estimation is introduced and the estimated process is presented. Finally, two typical driving cycles, including the Dynamic Stress Test (DST and New European Driving Cycle (NEDC are applied to evaluate the performance of the proposed method by comparing with the traditional extended Kalman filter (EKF and cubature Kalman filter (CKF algorithms. Experimental results show that the ACKF algorithm has better performance in terms of SOC estimation accuracy, convergence to different initial SOC errors and robustness against voltage measurement noise as compared with the traditional EKF and CKF algorithms.

  10. Average charge states of heavy and superheavy ions passing through a rarified gas: Theory and experiment

    Science.gov (United States)

    Khuyagbaatar, J.; Shevelko, V. P.; Borschevsky, A.; Düllmann, Ch. E.; Tolstikhina, I. Yu.; Yakushev, A.

    2013-10-01

    The average charge states q¯ of heavy and superheavy ions (atomic numbers Z=80-114) passing through He gas are studied experimentally and theoretically. Experimental data were measured at the gas-filled recoil separator, i.e., the TransActinide Separator and Chemistry Apparatus (TASCA) at GSI Darmstadt, for ion energies of a few hundred keV/u at gas pressures of 0.2 to 2.0 mbar. An attempt is made to describe experimental q¯ values by means of atomic calculations of the binding energies and electron-loss and electron-capture cross sections. The influence of the gas-density effect is included in the calculations. The calculated q¯ reproduce the experimental values for elements with Z=80-114 within 20%. A comparison with different semiempirical models is presented as well, including a local fit of high accuracy, which is often used in superheavy-element experiments to estimate the average charge states of heavy ions, e.g., at the gas-filled recoil separator TASCA. The q¯ values for elements with Z=115, 117, 119, and 120 at He-gas pressure of 0.8 mbar are predicted.

  11. Formation and decay of the Rydberg states of multiply charged ions interacting with solid surfaces

    Energy Technology Data Exchange (ETDEWEB)

    Mirkovic, M A; Nedeljkovic, N N; Bozanic, D K, E-mail: gmirkomarko@sezampro.rs

    2010-11-01

    Processes of formation and decay of the Rydberg states of multiply charged ions escaping solid surfaces with intermediate velocities (v {approx} 1 a.u.) represent complex quantum events that require a detailed quantum description. We have developed a two-state vector model for the population process, with the functions {Psi}{sub 1} and {Psi}{sub 2} for definition of the state of a single active electron. The electron exchange between the solid and the moving ion is described by a mixed flux through a plane positioned between them. For the low values of the angular momentum quantum numbers l the radial electronic coordinate {rho} can be neglected, whereas for the large-l values a wide space region around the projectile trajectory was taken into account. The reionization of the previously populated states is considered as a decay of the wave function {Psi}{sub 2}. The corresponding decay rates are obtained by an appropriate etalon equation method: in the large-l case the radial electronic coordinate {rho} is treated as a variational parameter. The theoretical predictions based on that population-reionization mechanism are compared with the available beam-foil experimental data, as well as the experimental data obtained in the interaction of multiply charged ions with micro-capillary foil. Generally, the model reproduces the experimentally observed non-linear trend of the l distributions from l = 0 to l{sub max} = n - 1.

  12. Evidence of double layer/capacitive charging in carbon nanomaterial-based solid contact polymeric ion-selective electrodes.

    Science.gov (United States)

    Cuartero, Maria; Bishop, Josiah; Walker, Raymart; Acres, Robert G; Bakker, Eric; De Marco, Roland; Crespo, Gaston A

    2016-08-11

    This paper presents the first direct spectroscopic evidence for double layer or capacitive charging of carbon nanomaterial-based solid contacts in all-solid-state polymeric ion-selective electrodes (ISEs). Here, we used synchrotron radiation-X-ray photoelectron spectroscopy (SR-XPS) and SR valence band (VB) spectroscopy in the elucidation of the charging mechanism of the SCs.

  13. ANISOTROPY EFFECTS IN SINGLE-ELECTRON TRANSFER BETWEEN LASER-EXCITED ATOMS AND HIGHLY-CHARGED IONS

    NARCIS (Netherlands)

    1995-01-01

    Recent collision experiments are reviewed in which one-electron transfer between laser excited target atoms and (highly charged) keV-ions has been studied. Especially results showing a dependence of the charge exchange on the initial target orbital alignment are discussed. The question to what exten

  14. Energy loss and charge state dependency of swift Nq+ ions scattered off a Pt(110)(1 x 2) surface

    NARCIS (Netherlands)

    Robin, A; Hatke, N; Jensen, J; Plachke, D; Carstanjen, HD; Heiland, W

    2003-01-01

    We present new surface scattering results combining measurements of energy loss and charge state distributions of 0.7-1.4 MeV Nq+ (q = 1, 2) ions. The energy range is still below the bulk stopping power maximum and charge exchange occurs. The projectiles scatter from a Pt(110)(1 x 2) single crystal

  15. A setup for transmission measurements of low energy multiply charged ions through free-standing few atomic layer films

    Science.gov (United States)

    Smejkal, V.; Gruber, E.; Wilhelm, R. A.; Brandl, L.; Heller, R.; Facsko, S.; Aumayr, F.

    2016-09-01

    We report the design and testing of a setup for transmission measurements of multiply charged ions through free-standing films with a thickness of a few atomic layers. The investigation thereof can yield deeper insight into charge equilibration and pre-equilibrium stopping phenomena which can ultimately be used to specifically tailor and modify these materials.

  16. Ion mobility mass spectrometry as a potential tool to assign disulfide bonds arrangements in peptides with multiple disulfide bridges.

    Science.gov (United States)

    Echterbille, Julien; Quinton, Loïc; Gilles, Nicolas; De Pauw, Edwin

    2013-05-07

    Disulfide bridges play a major role in defining the structural properties of peptides and proteins. However, the determination of the cysteine pairing is still challenging. Peptide sequences are usually achieved using tandem mass spectrometry (MS/MS) spectra of the totally reduced unfolded species, but the cysteine pairing information is lost. On the other hand, MS/MS experiments performed on native folded species show complex spectra composed of nonclassical ions. MS/MS alone does not allow either the cysteine pairing or the full sequence of an unknown peptide to be determined. The major goal of this work is to set up a strategy for the full structural characterization of peptides including disulfide bridges annotation in the sequence. This strategy was developed by combining ion mobility spectrometry (IMS) and collision-induced dissociation (CID). It is assumed that the opening of one S-S bridge in a peptide leads to a structural evolution which results in a modification of IMS drift time. In the presence of multiple S-S bridges, the shift in arrival time will depend on which disulfide(s) has (have) been reduced and on the shape adopted by the generated species. Due to specific fragmentations observed for each species, CID experiments performed after the mobility separation could provide not only information on peptide sequence but also on the localization of the disulfide bridges. To achieve this goal, synthetic peptides containing two disulfides were studied. The openings of the bridges were carried out following different experimental conditions such as reduction, reduction/alkylation, or oxidation. Due to disulfide scrambling highlighted with the reduction approaches, oxidation of S-S bonds into cysteic acids appeared to be the best strategy. Cysteine connectivity was then unambiguously determined for the two peptides, without any disulfide scrambling interference.

  17. The Effect of the Charge Fluctuation of Dust Particles on Ion-acoustic Wave Excited Through Ioniza tion Instability

    Institute of Scientific and Technical Information of China (English)

    华建军; 刘金远; 马腾才

    2002-01-01

    The effect of the charge fluctuation of dust particles on ion acoustic wave (IAW) excited through ionization instability was investigated. The hydrodynamic equations and linear time-dependent perturbation theory served as the starting point of theory, by which the dispersion relation and growth rate of the IAW were given. By comparing the results with the case of constant dust charges, it was found that the charge fluctuation of dust particles reduces the instability of the wave mode.

  18. Structural influences on preferential oxazolone versus diketopiperazine b(2+) ion formation for histidine analogue-containing peptides.

    Science.gov (United States)

    Gucinski, Ashley C; Chamot-Rooke, Julia; Nicol, Edith; Somogyi, Árpád; Wysocki, Vicki H

    2012-05-01

    Studies of peptide fragment ion structures are important to aid in the accurate kinetic modeling and prediction of peptide fragmentation pathways for a given sequence. Peptide b(2)(+) ion structures have been of recent interest. While previously studied b(2)(+) ions that contain only aliphatic or simple aromatic residues are oxazolone structures, the HA b(2)(+) ion consists of both oxazolone and diketopiperazine structures. The structures of a series of histidine-analogue-containing Xxx-Ala b(2)(+) ions were studied by using action infrared multiphoton dissociation (IRMPD) spectroscopy, fragment ion hydrogen-deuterium exchange (HDX), and density functional theory (DFT) calculations to systematically probe the influence of different side chain structural elements on the resulting b(2)(+) ion structures formed. The b(2)(+) ions studied include His-Ala (HA), methylated histidine analogues, including π-methyl-HA and τ-methyl-HA, pyridylalanine (pa) analogues, including 2-(pa)A, 3-(pa)A, and 4-(pa)A, and linear analogues, including diaminobutanoic acid-Ala (DabA) and Lys-Ala (KA). The location and accessibility of the histidine π-nitrogen, or an amino nitrogen on an aliphatic side chain, were seen to be essential for diketopiperazine formation in addition to the more typical oxazolone structure formation, while blocking or removal of the τ-nitrogen did not change the b(2)(+) ion structures formed. Linear histidine analogues, DabA and KA, formed only diketopiperazine structures, suggesting that a steric interaction in the HisAla case may interfere with the complete trans-cis isomerization of the first amide bond that is necessary for diketopiperazine formation.

  19. A New Charging Method for Li-ion Batteries: Dependence of the charging time on the Direction of an Additional Oscillating Field

    CERN Document Server

    Hamad, I Abou; Wipf, D O; Rikvold, P A

    2010-01-01

    We have recently proposed a new method for charging Li-ion batteries based on large-scale molecular dynamics studies (I. Abou Hamad et al, Phys. Chem. Chem. Phys., 12, 2740 (2010)). Applying an additional oscillating electric field in the direction perpendicular to the graphite sheets of the anode showed an exponential decrease in charging time with increasing amplitude of the applied oscillating field. Here we present new results exploring the effect on the charging time of changing the orientation of the oscillating field. Results for oscillating fields in three orthogonal directions are compared.

  20. Generation of multi-charged high current ion beams using the SMIS 37 gas-dynamic electron cyclotron resonance (ECR) ion source

    Energy Technology Data Exchange (ETDEWEB)

    Dorf, M.A., E-mail: dorf1@llnl.gov [Lawrence Livermore National Laboratory, Livermore, CA 94550 (United States); Zorin, V.G.; Sidorov, A.V.; Bokhanov, A.F.; Izotov, I.V.; Razin, S.V.; Skalyga, V.A. [Institute of Applied Physics RAS, 46 Ulyanov Street, 603950 Nizhny Novgorod (Russian Federation)

    2014-01-01

    A gas-dynamic ECR ion source (GaDIS) is distinguished by its ability to produce high current and high brightness beams of moderately charged ions. Contrary to a classical ECR ion source where the plasma confinement is determined by the slow electron scattering into an empty loss-cone, the higher density and lower electron temperature in a GaDIS plasma lead to an isotropic electron distribution with the confinement time determined by the prompt gas-dynamic flow losses. As a result, much higher ion fluxes are available; however a decrease in the confinement time of the GaDIS plasma lowers the ion charge state. The gas-dynamic ECR ion source concept has been successfully realized in the SMIS 37 experimental facility operated at the Institute of Applied Physics, Russia. The use of high-power (∼100 kW) microwave (37.5 GHz) radiation provides a dense plasma (∼10{sup 13} cm{sup −3}) with a relatively low electron temperature (∼50–100 eV) and allows for the generation of high current (∼1 A/cm{sup 2}) beams of multi-charged ions. In this work we report on the present status of the SMIS 37 ion source and discuss the advanced numerical modeling of ion beam extraction using the particle-in-cell code WARP.