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Sample records for channel structure final

  1. Ion channel structure. Final technical report, April 1, 1993--March 31, 1997

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1998-02-01

    During the past decade, endogenous antimicrobial peptides have become recognized as important, ubiquitous, and ancient contributors to the innate mechanisms which permit animals (including humans), and plants to resist infection. Most of these host defense peptides are small (18-35 amino acids), amphipathic and possess either an {alpha}-helical or cystine-stabilized {beta}-sheet structure. These peptides are probably too small for enzymatic function and, so far, no specific receptors have been found. All evidence indicates that their target of action is the lipid matrix of the bacterial cytoplasmic membranes. This project aimed at clarifying the mechanism of peptide-membrane interactions, in particular the pore formation by the peptides which appear to be the mode of action of these antimicrobials. Tremendous progress was made during the project period. We summarize our findings in the following report.

  2. On Marketing Channel Structures and Quality Choices

    OpenAIRE

    Wei-Wei Lee; Bo-Tai Tzeng

    2014-01-01

    This study applies the vertical differentiation model to issues of channel choice. The primary goal is to examine how channel structures may influence a firm's strategies and consumer welfare. Because our concerns are more about coordination rather than competition, the effects of strategic interaction are dominated by the two manufacturers and one retailer channel configuration. We observe that the decentralized firm has incentives to extend the degree of quality differentiation to relax pri...

  3. High transformer ratio of multi-channel dielectric wakefield structures

    Science.gov (United States)

    Shchelkunov, Sergey V.; Marshall, Thomas C.; Sotnikov, Gennadij V.; Hirshfield, Jay L.

    2016-09-01

    Dielectric wakefield (DWA) accelerator concepts are receiving attention on account of their promising performance, mechanical simplicity, and anticipated low cost. Interest in DWA physics directed toward an advanced high-gradient accelerator has been enhanced by a finding that some dielectrics can withstand very high fields (>1 GV/m) for the short times during the passage of charged bunches along dielectric-lined channels. In a two-channel structure, a drive bunch train propagates in a first channel, and in the second adjacent channel where a high gradient wakefield develops, a witness bunch is accelerated. Compared with single-channel DWA's, a two-beam accelerator delivers a high transformer ratio, and thereby reduces the number of drive beam sections needed to achieve a given final test beam energy. An overview of multi-channel DWA structures will be given, with an emphasis on two-channel structures, presenting their advantages and drawbacks, and potential impact on the field. Studies aimed to examine charging rate and charge distribution in a thin walled dielectric wakefield accelerator from a passing charge bunch and the physics of conductivity and discharge phenomena in dielectric materials useful for such accelerator applications are presented in a separate paper in the EAAC-2015 conference proceedings.

  4. The complex channel networks of bone structure

    CERN Document Server

    Costa, Luciano da Fontoura; Beletti, Marcelo E

    2006-01-01

    Bone structure in mammals involves a complex network of channels (Havers and Volkmann channels) required to nourish the bone marrow cells. This work describes how three-dimensional reconstructions of such systems can be obtained and represented in terms of complex networks. Three important findings are reported: (i) the fact that the channel branching density resembles a power law implies the existence of distribution hubs; (ii) the conditional node degree density indicates a clear tendency of connection between nodes with degrees 2 and 4; and (iii) the application of the recently introduced concept of hierarchical clustering coefficient allows the identification of typical scales of channel redistribution. A series of important biological insights is drawn and discussed

  5. Pricing Decision under Dual-Channel Structure considering Fairness and Free-Riding Behavior

    Directory of Open Access Journals (Sweden)

    Yongmei Liu

    2014-01-01

    Full Text Available Under dual-channel structure, the free-riding behavior based on different service levels between online channel and offline channel cannot be avoided, which would lead to channel unfairness. This study implies that the dual-channel supply chain is built up by online channel controlled by manufacturer and traditional channel controlled by retailer, respectively. Under this channel structure, we rebuild the linear demand function considering free-riding behavior and modify the pricing model based on channel fairness. Then the influences of fair factor and free-riding behavior on manufacturer and retailer pricing and performance are discussed. Finally, we propose some numerical analysis to provide some valuable recommendations for manufacturer and retailer improving channel management performance.

  6. Internal channel structures in trabecular bone

    Science.gov (United States)

    Scherf, Heike; Beckmann, Felix; Fischer, Jens; Witte, Frank

    2004-10-01

    Material properties of bone are crucial for studies regarding the mechanical behavior of bone. The mechanical behavior depends on the macro- and micro-architecture as well as the organic and mineral content of bone. The marco-architecture of bone is normally analyzed by plane radiographs. The micro-architecture of the trabecular bone can be imaged by high resolution CT imaging techniques using conventional x-ray tubes. However, fine structures in bone architecture cannot be sufficiently analyzed by this technique due to its limited resolution. High resolution CT imaging technique using synchrotron radiation generates images with a high spatial resolution of bone structures on a micron scale. Additionally, this imaging technique provides superior determination of local differences in the bone mineral density. Two microtomography techniques, first: based on conventional x-ray tubes and second: based on synchrotron radiation were compared in this study to detect fine bone structures such as inner trabecular channels. In two red howler monkeys (Alouatta seniculus) femora channel structures were found inside the trabecular bone by both techniques. Only synchrotron-based microtomography was able to detect layers of lower mineral density in the channel walls. The found structures in trabecular bone are normally expected in the Haversian channel walls of the cortical bone. However, the origin of the trabecular channel structure is not fully understood. We found, that synchrotron-based microtomography is a very valuable technique in the research of fine bone structures. Further research should focus on the impact of these findings on the mechanical properties of trabecular bone.

  7. Channel Contract Behavior: the Role of Risk Attitudes, Risk Perceptions, and Channel Members' Market Structures

    OpenAIRE

    Pennings, J.M.E.; Wansink, B.

    2004-01-01

    By integrating elements of both marketing and finance, we show how risk influences channel contract behavior. We model risk behavior as the interaction between risk attitude and risk perception (IRAP). An analysis of the joint channel decisions of 208 producers, wholesalers, and processors provides three results. First, risk attitudes significantly vary across different levels of channel members. Second, IRAP in combination with the channel member's market structure on the buying and selling ...

  8. Time-resolved evolution of coherent structures in turbulent channels

    Science.gov (United States)

    Lozano-Duran, Adrian; Jimenez, Javier

    2012-11-01

    The temporal evolution of vortex clusters and of the structures responsible for the momentum transfer in turbulent channels at Reτ = 950 , 2000 and 4000 are studied using DNS sequences with temporal separations among fields short enough for individual structures to be tracked. From the geometric intersection of structures in consecutive fields we build temporal connection graphs of all the objects and define main and secondary branches in a way that each branch represents the temporal evolution of one coherent structure. A family of evolutions is found with self-similar sizes and lifetimes that can be born at any height with respect to the wall, although the probability increases close to it. Especial attention is paid to the wall-normal displacement of the structures. Sweeps tend to go towards the wall whereas ejections move away from it. In all the cases, the vertical velocity is close to uτ and the wall-normal displacement is proportional to the lifetime of the structures and to their sizes. Finally, direct and inverse physical cascades are defined, associated with the process of splitting and merging among structures. The direct cascade predominates, but both directions are roughly comparable. Funded by ERC, CICYT and Spanish Ministry of Science.

  9. Structure of conducting channel of lightning

    NARCIS (Netherlands)

    Alanakyan, Yu. R.

    2013-01-01

    The spatial distribution of the plasma density in a lightning channel is studied theoretically. It is shown that the electric-field double layer is formed at the channel boundary. In this case, the electron temperature changes abruptly and ions are accelerated by the electric field of the double lay

  10. Understanding Sodium Channel Function and Modulation Using Atomistic Simulations of Bacterial Channel Structures.

    Science.gov (United States)

    Boiteux, C; Allen, T W

    2016-01-01

    Sodium channels are chief proteins involved in electrical signaling in the nervous system, enabling critical functions like heartbeat and brain activity. New high-resolution X-ray structures for bacterial sodium channels have created an opportunity to see how these proteins operate at the molecular level. An important challenge to overcome is establishing relationships between the structures and functions of mammalian and bacterial channels. Bacterial sodium channels are known to exhibit the main structural features of their mammalian counterparts, as well as several key functional characteristics, including selective ion conduction, voltage-dependent gating, pore-based inactivation and modulation by local anesthetic, antiarrhythmic and antiepileptic drugs. Simulations have begun to shed light on each of these features in the past few years. Despite deviations in selectivity signatures for bacterial and mammalian channels, simulations have uncovered the nature of the multiion conduction mechanism associated with Na(+) binding to a high-field strength site established by charged glutamate side chains. Simulations demonstrated a surprising level of flexibility of the protein, showing that these side chains are active participants in the permeation process. They have also uncovered changes in protein structure, leading to asymmetrical collapses of the activation gate that have been proposed to correspond to inactivated structures. These observations offer the potential to examine the mechanisms of state-dependent drug activity, focusing on pore-blocking and pore-based slow inactivation in bacterial channels, without the complexities of inactivation on multiple timescales seen in eukaryotic channels. Simulations have provided molecular views of the interactions of drugs, consistent with sites predicted in mammalian channels, as well as a wealth of other sites as potential new drug targets. In this chapter, we survey the new insights into sodium channel function that

  11. Final disposal room structural response calculations

    International Nuclear Information System (INIS)

    Finite element calculations have been performed to determine the structural response of waste-filled disposal rooms at the WIPP for a period of 10,000 years after emplacement of the waste. The calculations were performed to generate the porosity surface data for the final set of compliance calculations. The most recent reference data for the stratigraphy, waste characterization, gas generation potential, and nonlinear material response have been brought together for this final set of calculations

  12. Structural Determinants of Specific Lipid Binding to Potassium Channels

    NARCIS (Netherlands)

    Weingarth, M.H.; Prokofyev, A.; van der Cruijsen, E.A.W.; Nand, D.; Bonvin, A.M.J.J.; Pongs, O.; Baldus, M.

    2013-01-01

    We have investigated specific lipid binding to the pore domain of potassium channels KcsA and chimeric KcsAKv1.3 on the structural and functional level using extensive coarse-grained and atomistic molecular dynamics simulations, solid-state NMR, and single channel measurements. We show that, while K

  13. The JET mechanical structure - final design

    International Nuclear Information System (INIS)

    The paper describes the main geometrical features of the JET mechanical structure and the methods of manufacture for its principal components as well as the characteristics of the material qualities chosen. The analysis of the load response of the structure during a pulse, including the transient conditions at plasma disruption, is explained. The main numerical results of this analysis for the most severe load case corresponding to a typical plasma configuration at extended performance are presented. Examples of the experimental investigations carried out for certain crucial components of the structure to ensure their proper functioning are presented. Finally, the manufacturing status of the major components of the structure is summarized. (author)

  14. Allosterism and Structure in Thermally Activated Transient Receptor Potential Channels.

    Science.gov (United States)

    Diaz-Franulic, Ignacio; Poblete, Horacio; Miño-Galaz, Germán; González, Carlos; Latorre, Ramón

    2016-07-01

    The molecular sensors that mediate temperature changes in living organisms are a large family of proteins known as thermosensitive transient receptor potential (TRP) ion channels. These membrane proteins are polymodal receptors that can be activated by cold or hot temperatures, depending on the channel subtype, voltage, and ligands. The stimuli sensors are allosterically coupled to a pore domain, increasing the probability of finding the channel in its ion conductive conformation. In this review we first discuss the allosteric coupling between the temperature and voltage sensor modules and the pore domain, and then discuss the thermodynamic foundations of thermo-TRP channel activation. We provide a structural overview of the molecular determinants of temperature sensing. We also posit an anisotropic thermal diffusion model that may explain the large temperature sensitivity of TRP channels. Additionally, we examine the effect of several ligands on TRP channel function and the evidence regarding their mechanisms of action. PMID:27297398

  15. Emerging approaches to probing ion channel structure and function

    Institute of Scientific and Technical Information of China (English)

    Wei-Guang Li; Tian-Le Xu

    2012-01-01

    Ion channels,as membrane proteins,are the sensors of the cell.They act as the first line of communication with the world beyond the plasma membrane and transduce changes in the external and internal environments into unique electrical signals to shape the responses of excitable cells.Because of their importance in cellular communication,ion channels have been intensively studied at the structural and functional levels.Here,we summarize the diverse approaches,including molecular and cellular,chemical,optical,biophysical,and computational,used to probe the structural and functional rearrangements that occur during channel activation (or sensitization),inactivation (or desensitization),and various forms of modulation.The emerging insights into the structure and function of ion channels by multidisciplinary approaches allow the development of new pharmacotherapies as well as new tools useful in controlling cellular activity.

  16. [Cardiac potassium channels: molecular structure, physiology, pathophysiology and therapeutic implications].

    Science.gov (United States)

    Mironov, N Iu; Golitsyn, S P

    2013-01-01

    Potassium channels and currents play essential roles in cardiac repolarization. Potassium channel blockade by class III antiarrhythmic drugs prolongs cardiac repolarization and results in termination and prevention of cardiac arrhythmias. Excessive inhomogeneous repolarization prolongation may lead to electrical instability and proarrhythmia (Torsade de Pointes tachycardia). This review focuses on molecular structure, physiology, pathophysiology and therapeutic potential of potassium channels of cardiac conduction system and myocardium providing information on recent findings in pathogenesis of cardiac arrhythmias, including inherited genetic abnormalities, and future perspectives. PMID:24654438

  17. Horticultural marketing channels in Kenya: Structure and development.

    OpenAIRE

    Dijkstra, T

    1997-01-01

    This study analyses the structure and development of horticultural marketing channels in Kenya. It is based primarily on a farm survey among some 500 farmers in Nyandarua, Kisii and Taita Taveta Districts and a trade survey of about 750 horticultural traders in 18 different market places. The surveys were carried out between 1990 and 1992 as part of the Food and Nutrition Studies Programme.The book first describes the producers that bring horticultural commodities into the channels and then t...

  18. Functional Insights from Glutamate Receptor Ion Channel Structures

    Science.gov (United States)

    Kumar, Janesh; Mayer, Mark L.

    2014-01-01

    X-ray crystal structures for the soluble amino terminal and ligand binding domains of glutamate receptor ion channels, combined with a 3.6 Å resolution structure of the full length AMPA receptor GluA2 homotetramer, provide unique insights into the mechanisms of iGluR assembly and function. Increasingly sophisticated biochemical, computational and electrophysiological experiments are beginning to reveal the mechanism of action of partial agonists, and yield new models for the mechanism of action of allosteric modulators. Newly identified NMDA receptor ligands acting at novel sites offer hope for development of subtype selective modulators. Many issues remain unsolved, including the role of the ATD in AMPA receptor signaling, and the mechanisms by which auxiliary proteins regulate receptor activity. The structural basis for ion permeation and ion channel block also remain areas of uncertainty, and despite substantial progress, molecular dynamics simulations have yet to reveal how binding of glutamate opens the ion channel pore. PMID:22974439

  19. Structure and Mechanism of a Pentameric Formate Channel

    Energy Technology Data Exchange (ETDEWEB)

    Waight, A.; Love, J; Wang, D

    2010-01-01

    Formate transport across the inner membrane is a critical step in anaerobic bacterial respiration. Members of the formate/nitrite transport protein family function to shuttle substrate across the cytoplasmic membrane. In bacterial pathogens, the nitrite transport protein is involved in protecting bacteria from peroxynitrite released by host macrophages. We have determined the 2.13-{angstrom} structure of the formate channel FocA from Vibrio cholerae, which reveals a pentamer in which each monomer possesses its own substrate translocation pore. Unexpectedly, the fold of the FocA monomer resembles that found in water and glycerol channels. The selectivity filter in FocA consists of a cytoplasmic slit and a central constriction ring. A 2.5-{angstrom} high-formate structure shows two formate ions bound to the cytoplasmic slit via both hydrogen bonding and van der Waals interactions, providing a structural basis for the substrate selectivity of the channel.

  20. Structural evaluation of Siemens advanced fuel channel under accident loadings

    International Nuclear Information System (INIS)

    As a part of an effort to develop an advanced BWR fuel channel design, Siemens Power Corporation (SPC) and the Siemens AG Power Generation Group (KWU) performed structural analyses to verify the acceptability of the fuel channel design under combined seismic/LOCA (Loss Of. Coolant Accident) loadings. The results of the analyses give some interesting insights into the problem: 1) fluid-structure interaction (FSI) effects are significant and should be considered, 2) the problem may simplified by using a linear analysis despite non-linear features (gaps) between interfacing components, and 3) sufficient accuracy may be obtained by using only the first mode of vibration. The channeled fuel assembly can be considered to be a beam where the flexural stiffness is primarily determined by the fuel channel and the mass is given by the fuel assembly. The results from the analyses show the advanced fuel channel design meets applicable design criteria with adequate margins while at the same time exhibiting superior nuclear performance compared to a conventional BWR fuel channel. (author)

  1. Channel flow structure measurements using particle image velocimetry

    International Nuclear Information System (INIS)

    Two different flow structures in a laboratory channel were examined using a flow visualization technique, known as Particle Image Velocimetry (PIV). The first channel flow structure was that of a steady flow over a horizontal channel bottom. Photographs of particle displacements were taken in the boundary layer in a plane parallel to the flow. These photographs were analyzed to give simultaneous measurements of two components of the velocity at hundreds of points in the plane. Averaging these photographs gave the velocity profile a few millimeters from the bottom of the channel to the water surface. The results gave good agreement with the known boundary layer theory. This technique is extended to the study of the structure under a progressive wave in the channel. A wavelength of the propagating wave is divided into sections by photographing it continously for a number of frames. Each frame is analyzed and a velocity field under this wave at various phase points were produced with their respective directions. The results show that velocity vectors in a plane under the wave could be achieved instantaneously and in good agreement with the small amplitude wave theory

  2. Entanglement structure of the two-channel Kondo model

    Science.gov (United States)

    Alkurtass, Bedoor; Bayat, Abolfazl; Affleck, Ian; Bose, Sougato; Johannesson, Henrik; Sodano, Pasquale; Sørensen, Erik S.; Le Hur, Karyn

    2016-02-01

    Two electronic channels competing to screen a single impurity spin, as in the two-channel Kondo model, are expected to generate a ground state with a nontrivial entanglement structure. We exploit a spin-chain representation of the two-channel Kondo model to probe the ground-state block entropy, negativity, tangle, and Schmidt gap, using a density matrix renormalization group approach. In the presence of symmetric coupling to the two channels, we confirm field-theory predictions for the boundary entropy difference ln(gUV/gIR) =ln(2 ) /2 between the ultraviolet and infrared limits and the leading ln(x )/x impurity correction to the block entropy. The impurity entanglement Simp is shown to scale with the characteristic length ξ2 CK. We show that both the Schmidt gap and the entanglement of the impurity with one of the channels—as measured by the negativity—faithfully serve as order parameters for the impurity quantum phase transition appearing as a function of channel asymmetry, allowing for explicit determination of critical exponents, ν ≈2 and β ≈0.2 . Remarkably, we find the emergence of tripartite entanglement only in the vicinity of the critical channel-symmetric point.

  3. Horticultural marketing channels in Kenya: Structure and development.

    NARCIS (Netherlands)

    Dijkstra, T.

    1997-01-01

    This study analyses the structure and development of horticultural marketing channels in Kenya. It is based primarily on a farm survey among some 500 farmers in Nyandarua, Kisii and Taita Taveta Districts and a trade survey of about 750 horticultural traders in 18 different market places. The survey

  4. Ion Channel Voltage Sensors: Structure, Function, and Pathophysiology

    OpenAIRE

    Catterall, William A.

    2010-01-01

    Voltage-gated ion channels generate electrical signals in species from bacteria to man. Their voltage-sensing modules are responsible for initiation of action potentials and graded membrane potential changes in response to synaptic input and other physiological stimuli. Extensive structure-function studies, structure determination, and molecular modeling are now converging on a sliding-helix mechanism for electromechanical coupling in which outward movement of gating charges in the S4 transme...

  5. Crystal structure of the epithelial calcium channel TRPV6.

    Science.gov (United States)

    Saotome, Kei; Singh, Appu K; Yelshanskaya, Maria V; Sobolevsky, Alexander I

    2016-06-23

    Precise regulation of calcium homeostasis is essential for many physiological functions. The Ca(2+)-selective transient receptor potential (TRP) channels TRPV5 and TRPV6 play vital roles in calcium homeostasis as Ca(2+) uptake channels in epithelial tissues. Detailed structural bases for their assembly and Ca(2+) permeation remain obscure. Here we report the crystal structure of rat TRPV6 at 3.25 Å resolution. The overall architecture of TRPV6 reveals shared and unique features compared with other TRP channels. Intracellular domains engage in extensive interactions to form an intracellular 'skirt' involved in allosteric modulation. In the K(+) channel-like transmembrane domain, Ca(2+) selectivity is determined by direct coordination of Ca(2+) by a ring of aspartate side chains in the selectivity filter. On the basis of crystallographically identified cation-binding sites at the pore axis and extracellular vestibule, we propose a Ca(2+) permeation mechanism. Our results provide a structural foundation for understanding the regulation of epithelial Ca(2+) uptake and its role in pathophysiology. PMID:27296226

  6. Ion channel voltage sensors: structure, function, and pathophysiology.

    Science.gov (United States)

    Catterall, William A

    2010-09-23

    Voltage-gated ion channels generate electrical signals in species from bacteria to man. Their voltage-sensing modules are responsible for initiation of action potentials and graded membrane potential changes in response to synaptic input and other physiological stimuli. Extensive structure-function studies, structure determination, and molecular modeling are now converging on a sliding-helix mechanism for electromechanical coupling in which outward movement of gating charges in the S4 transmembrane segments catalyzed by sequential formation of ion pairs pulls the S4-S5 linker, bends the S6 segment, and opens the pore. Impairment of voltage-sensor function by mutations in Na+ channels contributes to several ion channelopathies, and gating pore current conducted by mutant voltage sensors in Na(V)1.4 channels is the primary pathophysiological mechanism in hypokalemic periodic paralysis. The emerging structural model for voltage sensor function opens the way to development of a new generation of ion-channel drugs that act on voltage sensors rather than blocking the pore. PMID:20869590

  7. The structure of GlpF, a glycerol conducting channel.

    Science.gov (United States)

    Fu, Dax; Libson, Andrew; Stroud, Robert

    2002-01-01

    The passage of water or small neutral solutes across the cell membrane in animals, plants and bacteria is facilitated by a family of homologous membrane channels, variously known as aquaporins though perhaps more correctly as aquaglyceroporins. The glycerol facilitator (GlpF) is a 28 kDa aquaglyceroporin that catalyses transmembrane diffusion of glycerol and certain linear polyhydric alcohols in Escherichia coli. X-ray crystallographic analysis of GlpF to 2.2 A resolution revealed an alpha-barrel structure, surrounded by six full-length transmembrane helices and two half-spanning helices that are joined head-to-head in the middle of the membrane. These helices are arranged to a quasi twofold manner relative to the central membrane plane, where highly conserved residues make helix-to-helix contacts that stabilize the relative position and orientation of the helices in the structure. This sequence-structure correlation suggests that the evolutionary divergence of aquaporins and aquaglyceroporins is constrained by a conserved structural framework within which specialized function may be developed. Three glycerol molecules were resolved in the central channel through the GlpF monomer, thereby defining a transmembrane channel for glycerol permeation. The structure of glycerol GlpF complex provides insight into the chemical basis for transmembrane selective permeability. PMID:12027015

  8. Structure and supramolecular architecture of membrane channel-forming peptides.

    Science.gov (United States)

    Spach, G; Duclohier, H; Molle, G; Valleton, J M

    1989-01-01

    Peptides gathering together to induce channels in lipid bilayers may be classified in several categories according to the spatial structures involved. For example, gramicidin A forms intramolecular tubes, alamethicin, bundles of helical rods with intermolecular pores, porins (being proteins, properly speaking) are rich in beta-sheets that may form barrels, whereas cyclic peptides might stack together resulting in the formation of pores. The chemical structure of these compounds is now well characterized. The transmembrane electrical signals that they transmit are also typical of the particular supramolecular configurations (or architecture). Investigations in this field are thus relevant to structure-function relationship studies due to the availability of natural or synthetic analogues allowing the measurement of the influence of physico-chemical parameters upon the energy profiles of the pores. Consequently, questions such as the existence and probabilities of conductance substrates, their voltage-dependence and their ion or molecular selectivity can be tackled. Today, the loosest aspect of these studies lies in the actual molecular conformations and architecture in the membranes of the peptide aggregates, the knowledge of which remains imprecise, even 'at rest' in the best-studied cases. This review attempts to point out still unresolved questions and to propose some plausible approaches concerning, for example: 1) the configurations of the molecular aggregates responsible for ion transfer; 2) the mechanisms for channel-opening and closing (gating); 3) the eventual cooperative phenomena between channels, via the bilayer or interfacial components. Possible applications of these structures will be tentatively outlined. PMID:2470416

  9. 1st International Conference on Hydraulic Design in Water Resources Engineering : Channels and Channel Control Structures

    CERN Document Server

    1984-01-01

    The development of water resources has proceeded at an amazing speed around the world in the last few decades. The hydraulic engineer has played his part: in constructing much larger artificial channels than ever before, larger and more sophisticated control structures, and systems of irrigation, drainage and water supply channels in which the flow by its nature is complex and unsteady requiring computer-based techniques at both the design and operation stage. It seemed appropriate to look briefly at some of the developments in hydraulic design resulting from this situation. Hence the idea of the Conference was formed. The Proceedings of the Conference show that hydraulic engineers have been able to acquire a very substantial base of design capability from the experience of the period referred to. The most outstanding development to have occurred is in the combination of physical and mathematical modelling, which in hydraulic engineering has followed a parallel path to that in other branches of engineering sc...

  10. Structural Determinants of Oligomerization of the Aquaporin-4 Channel.

    Science.gov (United States)

    Kitchen, Philip; Conner, Matthew T; Bill, Roslyn M; Conner, Alex C

    2016-03-25

    The aquaporin (AQP) family of integral membrane protein channels mediate cellular water and solute flow. Although qualitative and quantitative differences in channel permeability, selectivity, subcellular localization, and trafficking responses have been observed for different members of the AQP family, the signature homotetrameric quaternary structure is conserved. Using a variety of biophysical techniques, we show that mutations to an intracellular loop (loop D) of human AQP4 reduce oligomerization. Non-tetrameric AQP4 mutants are unable to relocalize to the plasma membrane in response to changes in extracellular tonicity, despite equivalent constitutive surface expression levels and water permeability to wild-type AQP4. A network of AQP4 loop D hydrogen bonding interactions, identified using molecular dynamics simulations and based on a comparative mutagenic analysis of AQPs 1, 3, and 4, suggest that loop D interactions may provide a general structural framework for tetrameric assembly within the AQP family. PMID:26786101

  11. Lagrangian Structure Function's Scaling Exponents in Turbulent Channel Flow

    International Nuclear Information System (INIS)

    The Lagrangian structure function's scaling exponents and intermittency of three-dimensional incompressible turbulent channel flow are investigated by using direct numerical simulation. The intermittency in streamwise velocity increments is found to increase in the near-wall region, which can be attributed to the presence of strong mean shear and organized motions in the near-wall region. It is found that the intermittency of transverse velocity increments is weaker than that of longitudinal ones. The present ESS evaluation of ζL(q) for the structure function of the streamwise velocity component in the channel centre is fairly close to experimental estimates of isotropic turbulence. (fundamental areas of phenomenology(including applications))

  12. Structural approximations to positive maps and entanglement breaking channels

    OpenAIRE

    Korbicz, J. K.; Almeida, M. L.; BAE, J.; Lewenstein, M.; Acin, A.

    2008-01-01

    Structural approximations to positive, but not completely positive maps are approximate physical realizations of these non-physical maps. They find applications in the design of direct entanglement detection methods. We show that many of these approximations, in the relevant case of optimal positive maps, define an entanglement breaking channel and, consequently, can be implemented via a measurement and state-preparation protocol. We also show how our findings can be useful for the design of ...

  13. Low-Complexity Structured Precoding for Spatially Correlated MIMO Channels

    CERN Document Server

    Raghavan, Vasanthan; Veeravalli, Venu

    2008-01-01

    The focus of this paper is on spatial precoding in correlated multi-antenna channels, where the number of independent data-streams is adapted to trade-off the data-rate with the transmitter complexity. Towards the goal of a low-complexity implementation, a structured precoder is proposed, where the precoder matrix evolves fairly slowly at a rate comparable with the statistical evolution of the channel. Here, the eigenvectors of the precoder matrix correspond to the dominant eigenvectors of the transmit covariance matrix, whereas the power allocation across the modes is fixed, known at both the ends, and is of low-complexity. A particular case of the proposed scheme (semiunitary precoding), where the spatial modes are excited with equal power, is shown to be near-optimal in matched channels. A matched channel is one where the dominant eigenvalues of the transmit covariance matrix are well-conditioned and their number equals the number of independent data-streams, and the receive covariance matrix is also well-...

  14. Modeling of diffusion mechanism of conductive channel oxidation in a Pt/NiO/Pt memory switching structure

    Science.gov (United States)

    Sysun, V. I.; Bute, I. V.; Boriskov, P. P.

    2016-09-01

    The transition process from the low resistance state into the high resistance state in a Pt/NiO/Pt memory switching structure has been studied by numerical modeling. Detailed analysis shows, that thermally induced diffusion oxidation by nickel vacancies is the key factor for distortion of the channel metallic conductivity. Spatial dynamics of the process of oxidation defines channel narrowing mainly in its central part, and also sets the critical current through the structure sufficient for final rupture of the channel and the transition to high resistance state. The increase in critical current above the limit even by 10% reduces the switching time by an order of magnitude, which is in agreement with experiments. The developed radial diffusion model of conductive channel (or filaments) oxidation may be suitable for the analysis of switching effect a number of other ReRAM oxide structures.

  15. On the structural features of fiber suspensions in converging channel flow

    Institute of Scientific and Technical Information of China (English)

    林建忠; 张凌新

    2003-01-01

    The structural features of fiber suspensions are dependent on the fiber alignment in the flows. In this work the orientation distribution function and orientation tensors for semi-concentrated fiber suspensions in converging channel flow were calculated, and the evolutions of the fiber alignment and the bulk effective viscosity were analyzed. The results showed that the bulk stress and the effective viscosity were functions of the rate-of-strain tensor and the fiber orientation state; and that the fiber suspensions evolved to steady alignment and tended to concentrate to some preferred directions close to but not same as the directions of local streamlines. The bulk effective viscosity depended on the product of Reynolds number and time. The decrease of effective viscosity near the boundary benefited the increase of the rate of flow. Finally when the fiber alignment went into steady state, the structural features of fiber suspensions were not dependent on the Reynolds number but on the converging channel angle.

  16. A fast nonlinear variable structure equivalent magnetic circuit modeling for dual-channel switched reluctance machine

    International Nuclear Information System (INIS)

    Switched reluctance machines (SRMs) are normally designed and applied as 6/4 or 8/6 single-channel SRMs, recent efforts with 12/8 dual-channel SRM (DCSRM) have spurred interest. The DCSRM is driven by two independent sets of power electronic circuits with dual control channels and a fault tolerated operation mode can be used in this system for high reliability. In this paper, a fast nonlinear variable structure equivalent magnetic circuit (VSEMC) modeling method is developed for DCSRM. This method is used to calculate the static self and mutual flux linkage of phase winding for DCSRM by the formulas of airgap permeances, the stator and rotor pole and yoke permeances, in which the mutual effects as well as the magnetic saturation are taken into account. Then, a series of experimental tests are performed to obtain the static magnetic characteristics of a 12/8 DCSRM including self and mutual flux linkages under different rotor positions for varying exciting current conditions. The effectiveness of this proposed VSEMC method is verified by comparing with the FEM analysis and experimental results. Finally, details of simulation model for DCSRM under single channel operation mode and dual channel operation mode and comparison with experimental waveforms along with their implications for performances prediction are presented.

  17. Invisibility carpet in a channel with a structured fluid

    CERN Document Server

    Dupont, Guillaume; Enoch, Stefan

    2011-01-01

    We first note it is possible to construct two linear operators defined on two different domains, yet sharing the same spectrum using a geometric transform. However, one of these two operators will necessarily have spatially varying, matrix valued, coefficients. This mathematical property can be used in the design of metamaterials whereby two different domains behave in the same electromagnetic, acoustic, or hydrodynamic way (mimetism). To illustrate this property, we describe a feasible invisibility carpet for linear surface liquid waves in a channel. This structured metamaterial bends surface waves over a finite interval of Hertz frequencies.

  18. Just How Final are Today's Quantum Structures?

    CERN Document Server

    Busch, P

    2001-01-01

    I present a selection of conceptual and mathematical problems in the foundations of modern physics as they derive from the title question. Contribution to a panel session, ``Springer Forum: Quantum Structures -- Physical, Mathematical and Epistemological Problems", held at the Biannual Symposium of the International Quantum Structures Association, Liptovsky Jan, September 1998. To appear in journal: Soft Computing (2001).

  19. Perceptual Structure of Scientific Knowledge. Final Report.

    Science.gov (United States)

    Johnson, Paul E.

    The research contained in this report is directed at the problem of assessing structures of knowledge in science. Toward this end graduate as well as undergraduate students were asked to make judgments of the perceived similarity of expressions that mark or label concepts in the subject matter of physics. An apriori model of the structure of…

  20. Highly stable thin film transistors using multilayer channel structure

    KAUST Repository

    Nayak, Pradipta K.

    2015-03-09

    We report highly stable gate-bias stress performance of thin film transistors (TFTs) using zinc oxide (ZnO)/hafnium oxide (HfO2) multilayer structure as the channel layer. Positive and negative gate-bias stress stability of the TFTs was measured at room temperature and at 60°C. A tremendous improvement in gate-bias stress stability was obtained in case of the TFT with multiple layers of ZnO embedded between HfO2 layers compared to the TFT with a single layer of ZnO as the semiconductor. The ultra-thin HfO2 layers act as passivation layers, which prevent the adsorption of oxygen and water molecules in the ZnO layer and hence significantly improve the gate-bias stress stability of ZnO TFTs.

  1. Quaternionic Lattice Structures for Four-Channel Paraunitary Filter Banks

    Directory of Open Access Journals (Sweden)

    Parfieniuk Marek

    2007-01-01

    Full Text Available A novel approach to the design and implementation of four-channel paraunitary filter banks is presented. It utilizes hypercomplex number theory, which has not yet been employed in these areas. Namely, quaternion multipliers are presented as alternative paraunitary building blocks, which can be regarded as generalizations of Givens (planar rotations. The corresponding quaternionic lattice structures maintain losslessness regardless of coefficient quantization and can be viewed as extensions of the classic two-band lattice developed by Vaidyanathan and Hoang. Moreover, the proposed approach enables a straightforward expression of the one-regularity conditions. They are stated in terms of the lattice coefficients, and thus can be easily satisfied even in finite-precision arithmetic.

  2. Structural insights into the mechanism of activation of the TRPV1 channel by a membrane-bound tarantula toxin.

    Science.gov (United States)

    Bae, Chanhyung; Anselmi, Claudio; Kalia, Jeet; Jara-Oseguera, Andres; Schwieters, Charles D; Krepkiy, Dmitriy; Won Lee, Chul; Kim, Eun-Hee; Kim, Jae Il; Faraldo-Gómez, José D; Swartz, Kenton J

    2016-01-01

    Venom toxins are invaluable tools for exploring the structure and mechanisms of ion channels. Here, we solve the structure of double-knot toxin (DkTx), a tarantula toxin that activates the heat-activated TRPV1 channel. We also provide improved structures of TRPV1 with and without the toxin bound, and investigate the interactions of DkTx with the channel and membranes. We find that DkTx binds to the outer edge of the external pore of TRPV1 in a counterclockwise configuration, using a limited protein-protein interface and inserting hydrophobic residues into the bilayer. We also show that DkTx partitions naturally into membranes, with the two lobes exhibiting opposing energetics for membrane partitioning and channel activation. Finally, we find that the toxin disrupts a cluster of hydrophobic residues behind the selectivity filter that are critical for channel activation. Collectively, our findings reveal a novel mode of toxin-channel recognition that has important implications for the mechanism of thermosensation. PMID:26880553

  3. Optimal Structures for Multimedia Instruction. Final Report.

    Science.gov (United States)

    Goguen, Joseph; And Others

    This 2-year study, which took a multidisciplinary approach to the problem of discovering principles for designing effective multimedia instruction, focused on the effects on instructional effectiveness of the discourse structure of instructional materials and the coordination of multiple instructional media. The task domain was a logic box said to…

  4. Final Report 'Structure of Rare Isotopes'

    International Nuclear Information System (INIS)

    The Junior Investigator grant 'Structure of Rare Isotopes' (DE-FG02-07ER41529) supported research in low-energy nuclear theory from September 1, 2007 to August 31, 2010. It was the main goal of the proposed research to develop and optimize an occupation-number-based energy functional for the computation of nuclear masses, and this aim has been reached. Furthermore, progress was made in linking two and three-body forces from low-momentum interactions to pairing properties in nuclear density functionals, and in the description of deformed nuclei within an effective theory.

  5. Structure and Permeability of Ion-channels by Integrated AFM and Waveguide TIRF Microscopy

    OpenAIRE

    Srinivasan Ramachandran; Fernando Teran Arce; Patel, Nirav R.; Quist, Arjan P.; Cohen, Daniel A.; Ratnesh Lal

    2014-01-01

    Membrane ion channels regulate key cellular functions and their activity is dependent on their 3D structure. Atomic force microscopy (AFM) images 3D structure of membrane channels placed on a solid substrate. Solid substrate prevents molecular transport through ion channels thus hindering any direct structure-function relationship analysis. Here we designed a ~70 nm nanopore to suspend a membrane, allowing fluidic access to both sides. We used these nanopores with AFM and total internal refle...

  6. Acoustic-structure interaction problems. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Love, E.; Taylor, R.L.

    1993-12-01

    The purpose of this report is to compare and evaluate different numerical methods for solving problems of interaction between elastic solids and acoustic fluids. In particular, we concentrate our efforts on solution techniques involving the finite element method. To that end, in Chapter 2 we discuss different options for analysis of infinite fluids. In particular, the method of mesh trunction and the use of radiation elements and the use of infinite elements are discussed. Also discussed is the analysis of scattering from rigid boundaries. Chapter 3 is a brief discussion of finite element formulations for elastic solids. We review the development, of two dimensional plane strain elements and one dimensional plate and shell elements. In Chapter 4, there is a discussion of the method used to couple the solid and the fluid. We give examples for solution of scattering of pressure waves from thin elastic shell structures. Chapter 5 is a brief conclusion of results and includes recommendations for the best methods of solution and additional research.

  7. Insulating Structural Ceramics Program, Final Report

    Energy Technology Data Exchange (ETDEWEB)

    Andrews, Mark J.; Tandon, Raj; Ott, Eric; Hind, Abi Akar; Long, Mike; Jensen, Robert; Wheat, Leonard; Cusac, Dave; Lin, H. T.; Wereszczak, Andrew A.; Ferber, Mattison K.; Lee, Sun Kun; Yoon, Hyung K.; Moreti, James; Park, Paul; Rockwood, Jill; Boyer, Carrie; Ragle, Christie; Balmer-Millar, Marilou; Aardahl, Chris; Habeger, Craig; Rappe, Ken; Tran, Diana; Koshkarian, Kent; Readey, Michael

    2005-11-22

    New materials and corresponding manufacturing processes are likely candidates for diesel engine components as society and customers demand lower emission engines without sacrificing power and fuel efficiency. Strategies for improving thermal efficiency directly compete with methodologies for reducing emissions, and so the technical challenge becomes an optimization of controlling parameters to achieve both goals. Approaches being considered to increase overall thermal efficiency are to insulate certain diesel engine components in the combustion chamber, thereby increasing the brake mean effective pressure ratings (BMEP). Achieving higher BMEP rating by insulating the combustion chamber, in turn, requires advances in material technologies for engine components such as pistons, port liners, valves, and cylinder heads. A series of characterization tests were performed to establish the material properties of ceramic powder. Mechanical chacterizations were also obtained from the selected materials as a function of temperature utilizing ASTM standards: fast fracture strength, fatique resistance, corrosion resistance, thermal shock, and fracture toughness. All ceramic materials examined showed excellent wear properties and resistance to the corrosive diesel engine environments. The study concluded that the ceramics examined did not meet all of the cylinder head insert structural design requirements. Therefore we do not recommend at this time their use for this application. The potential for increased stresses and temperatures in the hot section of the diesel engine combined with the highly corrosive combustion products and residues has driven the need for expanded materials capability for hot section engine components. Corrosion and strength requirements necessitate the examination of more advanced high temperture alloys. Alloy developments and the understanding of processing, structure, and properties of supperalloy materials have been driven, in large part, by the gas

  8. Molecular aspects of structure, gating, and physiology of pH-sensitive background K2P and Kir K+-transport channels.

    Science.gov (United States)

    Sepúlveda, Francisco V; Pablo Cid, L; Teulon, Jacques; Niemeyer, María Isabel

    2015-01-01

    K(+) channels fulfill roles spanning from the control of excitability to the regulation of transepithelial transport. Here we review two groups of K(+) channels, pH-regulated K2P channels and the transport group of Kir channels. After considering advances in the molecular aspects of their gating based on structural and functional studies, we examine their participation in certain chosen physiological and pathophysiological scenarios. Crystal structures of K2P and Kir channels reveal rather unique features with important consequences for the gating mechanisms. Important tasks of these channels are discussed in kidney physiology and disease, K(+) homeostasis in the brain by Kir channel-equipped glia, and central functions in the hearing mechanism in the inner ear and in acid secretion by parietal cells in the stomach. K2P channels fulfill a crucial part in central chemoreception probably by virtue of their pH sensitivity and are central to adrenal secretion of aldosterone. Finally, some unorthodox behaviors of the selectivity filters of K2P channels might explain their normal and pathological functions. Although a great deal has been learned about structure, molecular details of gating, and physiological functions of K2P and Kir K(+)-transport channels, this has been only scratching at the surface. More molecular and animal studies are clearly needed to deepen our knowledge. PMID:25540142

  9. Biological Membrane Ion Channels Dynamics, Structure, and Applications

    CERN Document Server

    Chung, Shin-Ho; Krishnamurthy, Vikram

    2007-01-01

    Ion channels are biological nanotubes that are formed by membrane proteins. Because ion channels regulate all electrical activities in living cells, understanding their mechanisms at a molecular level is a fundamental problem in biology. This book deals with recent breakthroughs in ion-channel research that have been brought about by the combined effort of experimental biophysicists and computational physicists, who together are beginning to unravel the story of these exquisitely designed biomolecules. With chapters by leading experts, the book is aimed at researchers in nanodevices and biosensors, as well as advanced undergraduate and graduate students in biology and the physical sciences. Key Features Presents the latest information on the molecular mechanisms of ion permeation through membrane ion channels Uses schematic diagrams to illustrate important concepts in biophysics Written by leading researchers in the area of ion channel investigations

  10. Entrance channel effects in fusion reactions near the barrier: Reaction dynamics or nuclear structure?

    International Nuclear Information System (INIS)

    The origin of previously reported entrance channel effects by symmetric and asymmetric fusion reactions leading to rare earth nuclei near the Coulomb barrier is critically reviewed. Possible influences of reaction dynamics or structure effects due to the proximity of superdeformation are discussed using new charged-particle spectra and angular distributions associated with specific axn exit channels. For axn channels, nonstatistical effects in the fusion of the asymmetric entrance channel are responsible for the large difference in the spin distributions in the evaporation residues formed by symmetric and asymmetric entrance channels. Whereas GDR spectra show significant entrance channel effects, the authors find no influence on the subbarrier α spectra from possible elongated shapes associated with early reaction dynamics. New data and analyses of γ-ray multiplicity distributions from the xn exit channels show that previously reported entrance channel effects are due to mapping from l to residue spin and then to γ-ray multiplicity

  11. Effect of the Flow Channel Structure on the Nanofiltration Separation Performance

    Directory of Open Access Journals (Sweden)

    Zhi Chen

    2013-01-01

    Full Text Available Two kinds of newly designed feed channels, for example, a spiral and a serpentine feed channels, for a bench-scale nanofiltration module were developed to improve the filtration performance. The experiments were carried out with the modules using a commercial flat NF membrane to investigate the effects of Reynolds number (Re and flow channel structures on the flux of permeate and Mg2+ rejection. It was shown from the experimental results that although the effects of Reynolds number on fluxes were not obvious for the two new feed channels compared with a normal flow channel structure, the Mg2+ rejections varied apparently with Re. The Mg2+ rejections were almost the same for the modules with two new feed channels and larger than that for the module with normal feed channel. The numerical simulations of fluid flow in the three kinds of feed channels were completed at Re of 4800 to explain the phenomena. The results demonstrated that there was a secondary flow in both new feed channels, which strongly influences the Mg2+ rejection. The rejection increased with increasing average shear stress at the membrane wall. The spiral feed channel was the best one among the flow channel structures investigated.

  12. On the structural features of fiber suspensions in converging channel flow

    Institute of Scientific and Technical Information of China (English)

    林建忠; 张凌新

    2003-01-01

    The structural features of fiber suspensions are dependent on the fiber alignment in the flows. In this work the orientation distribution function and orientation tensors for semi-concentrated fiber suspensions in converging channel flow were calculated, and the evolutions of the fiber alignment and the bulk effective vis-cosity were analyzed. The results showed that the bulk stress and the effective viscosity were functions of therate-of-strain tensor and the fiber orientation state ; and that the fiber suspensions evolved to steady alignment and tended to concentrate to some preferred directions close to but not same as the directions of local stream-lines. The bulk effective viscosity depended on the product of Reynolds number and time. The decrease of ef-fective viscosity near the boundary benefited the increase of the rate of flow. Finally when the fiber alignment went into steady state, the structural features of fiber suspensions were not dependent on the Reynolds numberbut on the converging channel angle.

  13. Putative Structural and Functional Coupling of the Mitochondrial BKCa Channel to the Respiratory Chain.

    Directory of Open Access Journals (Sweden)

    Piotr Bednarczyk

    Full Text Available Potassium channels have been found in the inner mitochondrial membranes of various cells. These channels regulate the mitochondrial membrane potential, the matrix volume and respiration. The activation of these channels is cytoprotective. In our study, the single-channel activity of a large-conductance Ca(2+-regulated potassium channel (mitoBKCa channel was measured by patch-clamping mitoplasts isolated from the human astrocytoma (glioblastoma U-87 MG cell line. A potassium-selective current was recorded with a mean conductance of 290 pS in symmetrical 150 mM KCl solution. The channel was activated by Ca(2+ at micromolar concentrations and by the potassium channel opener NS1619. The channel was inhibited by paxilline and iberiotoxin, known inhibitors of BKCa channels. Western blot analysis, immuno-gold electron microscopy, high-resolution immunofluorescence assays and polymerase chain reaction demonstrated the presence of the BKCa channel β4 subunit in the inner mitochondrial membrane of the human astrocytoma cells. We showed that substrates of the respiratory chain, such as NADH, succinate, and glutamate/malate, decrease the activity of the channel at positive voltages. This effect was abolished by rotenone, antimycin and cyanide, inhibitors of the respiratory chain. The putative interaction of the β4 subunit of mitoBKCa with cytochrome c oxidase was demonstrated using blue native electrophoresis. Our findings indicate possible structural and functional coupling of the mitoBKCa channel with the mitochondrial respiratory chain in human astrocytoma U-87 MG cells.

  14. Online channel operation mode: Game theoretical analysis from the supply chain power structure

    Directory of Open Access Journals (Sweden)

    Song Huang

    2015-11-01

    Full Text Available Purpose: Dual-channels have been widely used in practice, and the pricing decisions and the online channel operation mode choice have been the core problems in dual-channel supply chain management. This paper focuses on the online channel operation mode choice from the supply chain power structures based on game theoretical analysis. Design/methodology/approach: This paper utilizes three kinds of game theoretical models to analyze the impact of supply chain power structures on the optimal pricing and online channel operation mode choice. Findings: Results derived in this paper indicate that when the self-price elasticity is large, the power structures have no direct impact on the decisions. However, when the self-price elasticity is small and customers’ preference for the online channel is low, then in the MS market, it is better for the retailer to operate the online channel, while in the RS market or in the VN market, it is better for the manufacturer to operate the online channel. Research limitations/implications: In this paper, we do not consider stochastic demand and asymmetric information, which may not well suit the reality. Originality/value: This paper provides a different perspective to analyze the impact of supply chain power structures on the pricing decisions and online channel operation mode choice. The comparison of these two online channel operation modes in this paper is also a unique point.

  15. Voltage-Gated Potassium Channels: A Structural Examination of Selectivity and Gating.

    Science.gov (United States)

    Kim, Dorothy M; Nimigean, Crina M

    2016-01-01

    Voltage-gated potassium channels play a fundamental role in the generation and propagation of the action potential. The discovery of these channels began with predictions made by early pioneers, and has culminated in their extensive functional and structural characterization by electrophysiological, spectroscopic, and crystallographic studies. With the aid of a variety of crystal structures of these channels, a highly detailed picture emerges of how the voltage-sensing domain reports changes in the membrane electric field and couples this to conformational changes in the activation gate. In addition, high-resolution structural and functional studies of K(+) channel pores, such as KcsA and MthK, offer a comprehensive picture on how selectivity is achieved in K(+) channels. Here, we illustrate the remarkable features of voltage-gated potassium channels and explain the mechanisms used by these machines with experimental data. PMID:27141052

  16. Structure of gramicidin D-RbCl complex at atomic resolution from low-temperature synchrotron data: interactions of double-stranded gramicidin channel contents and cations with channel wall

    Energy Technology Data Exchange (ETDEWEB)

    Glówka, M.L.; Olczak, A.; Bojarska, J.; Szczesio, M.; Duax, W.L.; Burkhart, B.M.; Pangborn, W.A.; Langs, D.A.; Wawrzak, Z. (Poland); (NWU); (Hauptman)

    2010-03-05

    Gramicidin D (gD) is a naturally occurring ionophoric antibiotic that forms membrane channels specific for monovalent cations. The crystal structure of the RbCl complex of gD has been determined at 1.14 {angstrom} resolution from low-temperature (100 K) synchrotron-radiation data with a final R of 16%. The structure was refined with anisotropic temperature factors for all non-H atoms and with partial occupancies for many of them. The asymmetric unit in the crystal contains four crystallographically independent molecules that form two right-handed antiparallel double-stranded dimers. There are seven distinct rubidium-binding sites in each dimeric channel. The occupancy factors of Rb cations are between 0.11 and 0.35 and the total ion contents of the two crystallographically independent channels are 1.59 and 1.22 ions, respectively. Although each channel is 'chemically symmetrical', the side-chain conformations, the distributions of rubidium cations and their binding sites in the two independent channels are not. Cations are 'coordinated' by delocalized {pi}-electrons of three to five carbonyl groups that together with peptide backbone chains form the gramicidin channel walls. The water:cation ratio in the channel interior is four or five:one, and five or six waters separate Rb cations during their passage through the channel.

  17. Providing Secrecy With Structured Codes: Tools and Applications to Two-User Gaussian Channels

    CERN Document Server

    He, Xiang

    2009-01-01

    Recent results have shown that structured codes can be used to construct good channel codes, source codes and physical layer network codes for Gaussian channels. For Gaussian channels with secrecy constraints, however, efforts to date rely on random codes. In this work, we advocate that structured codes are useful for providing secrecy, and show how to compute the secrecy rate when structured codes are used. In particular, we solve the problem of bounding equivocation rates with one important class of structured codes, i.e., nested lattice codes. Having established this result, we next demonstrate the use of structured codes for secrecy in two-user Gaussian channels. In particular, with structured codes, we prove that a positive secure degree of freedom is achievable for a large class of fully connected Gaussian channels as long as the channel is not degraded. By way of this, for these channels, we establish that structured codes outperform Gaussian random codes at high SNR. This class of channels include the...

  18. Tetrodotoxin binding sites in human heart and human brain sodium channels. Final report, 28 June 1991-27 June 1994

    Energy Technology Data Exchange (ETDEWEB)

    Brown, A.M.; Hartmann, H.A.

    1994-07-28

    Tetrodotoxin (TTX) and saxitoxin (STX) are potent and lethal threats to exposed soldiers. The development of an antidote or site-specific antibodies for low affinity TTX/STX cardiac sodium channels and high affinity TTX/STX brain and peripheral nerve sodium channels requires a data base not only of the primary structure of the toxin receptor site(s) but also insight into the secondary structures of these site(s). Five goals or tasks were attempted and the first three were completed. Full-length human cardiac and brain sodium channel cDNAs have been cloned and expressed as functional proteins in Xenopus oocytes. Silent restriction sites have been introduced around the pore or P-region of the Na+ channel repeats. Site-directed mutagenesis has identified critical residues in the pore from the primary structure involved in sensitivity to TTX and STX and other pore properties. Chemical modification of cysteine mutants of these initial residues by methanethiosulfonate compounds produces an expanded data base of the secondary structure of the toxins` receptors. Specific peptides which mimic these receptors will be made to compete with the natural receptor for the toxins. We have successfully cloned the cDNAs for both human heart and brain sodium channels and expressed functional proteins. The initial chemical modification data suggests file receptor sites for TTX/STX are not interchangeable and are not the same site.

  19. Structure of the inactivating gate from the Shaker voltage gated K+ channel analyzed by NMR spectroscopy

    International Nuclear Information System (INIS)

    Rapid inactivation of voltage-gated K+ (KV) channels is mediated by an N-terminal domain (inactivating ball domain) which blocks the open channel from the cytoplasmic side. Inactivating ball domains of various KV channels are also biologically active when synthesized separately and added as a peptide to the solution. Synthetic inactivating ball domains from different KV channels with hardly any sequence homology mediate quite similar effects even on unrelated KV channel subtypes whose inactivation domain has been deleted. The solution structure of the inactivating ball peptide from Shaker (Sh-P22) was analyzed with NMR spectroscopy. The NMR data indicate a non-random structure in an aqueous environment. However, while other inactivating ball peptides showed well-defined three-dimensional structures under these conditions, Sh-P22 does not have a unique, compactly folded structure in solution. (orig.)

  20. Structure of the full-length TRPV2 channel by cryo-EM

    Science.gov (United States)

    Huynh, Kevin W.; Cohen, Matthew R.; Jiang, Jiansen; Samanta, Amrita; Lodowski, David T.; Zhou, Z. Hong; Moiseenkova-Bell, Vera Y.

    2016-03-01

    Transient receptor potential (TRP) proteins form a superfamily Ca2+-permeable cation channels regulated by a range of chemical and physical stimuli. Structural analysis of a `minimal' TRP vanilloid subtype 1 (TRPV1) elucidated a mechanism of channel activation by agonists through changes in its outer pore region. Though homologous to TRPV1, other TRPV channels (TRPV2-6) are insensitive to TRPV1 activators including heat and vanilloids. To further understand the structural basis of TRPV channel function, we determined the structure of full-length TRPV2 at ~5 Å resolution by cryo-electron microscopy. Like TRPV1, TRPV2 contains two constrictions, one each in the pore-forming upper and lower gates. The agonist-free full-length TRPV2 has wider upper and lower gates compared with closed and agonist-activated TRPV1. We propose these newly revealed TRPV2 structural features contribute to diversity of TRPV channels.

  1. Drag reduction in ultrahydrophobic channels with micro-nano structured surfaces

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    A series of experiments have been performed to demonstrate the significant drag reduction of the laminar flow in the ultrahydrophobic channels with dual-scale micro-nano structured surfaces.However,in previous experiments,the ultrahydrophobic surfaces were fabricated with micro-structures or nano-structures and the channels were on the microscale.For the drag reduction in macro-scale channels few reports are available.Here a new method was developed to fabricate ultrahydrophobic surfaces with micro-nano hierarchical structures made from carbon nanotubes.The drag reductions up to 36.3% were observed in the macro-channels with ultrahydrophobic surfaces.The micro-PIV was used to measure the flow velocity in channels.Compared with the traditional no-slip theory at walls,a significant slip velocity was observed on the ultrahydrophobic surfaces.

  2. Vortex structures in turbulent channel flow behind an orifice

    Science.gov (United States)

    Makino, Soichiro; Iwamoto, Kaoru; Kawamura, Hiroshi

    2006-11-01

    Direct numerical simulation of a channel flow with an orifice has been performed for Reτ0=10 - 600, where uτ0 is the friction velocity calculated from the mean pressure gradient, δ the channel half width and ν the kinematic viscosity. In the wake region, the mean flow becomes asymmetric by the Coanda effect. The degree of asymmetry increases with increasing the Reynolds number for the laminar flow at Reτ0effect upon the reattachment locations and streamwise vortices near the wall in the wake region.

  3. Crystal structure of the PAS domain of the hEAG potassium channel.

    Science.gov (United States)

    Tang, Xue; Shao, Juan; Qin, Xiaohong

    2016-08-01

    KCNH voltage-gated potassium channels play critical roles in regulating cellular functions. The channel is composed of four subunits, each of which contains six transmembrane helices forming the central pore. The cytoplasmic parts of the subunits present a Per-Arnt-Sim (PAS) domain at the N-terminus and a cyclic nucleotide-binding homology domain at the C-terminus. PAS domains are conserved from prokaryotes to eukaryotes and are involved in sensing signals and cellular responses. To better understand the functional roles of PAS domains in KCNH channels, the structure of this domain from the human ether-à-go-go channel (hEAG channel) was determined. By comparing it with the structures of the Homo sapiens EAG-related gene (hERG) channel and the Drosophila EAG-like K(+) (dELK) channel and analyzing the structural features of the hEAG channel, it was identified that a hydrophobic patch on the β-sheet may mediate interaction between the PAS domain and other regions of the channel to regulate its functions. PMID:27487920

  4. Structural analysis of calmodulin binding to ion channels demonstrates the role of its plasticity in regulation.

    NARCIS (Netherlands)

    Kovalevskaya, N.V.; Waterbeemd, M. van de; Bokhovchuk, F.M.; Bate, N.; Bindels, R.J.M.; Hoenderop, J.G.J.; Vuister, G.W.

    2013-01-01

    The Ca2+-binding protein calmodulin (CaM) is a well-known regulator of ion-channel activity. Consequently, the Protein Data Bank contains many structures of CaM in complex with different fragments of ion channels that together display a variety of binding modes. In addition to the canonical interact

  5. Structural basis of slow activation gating in the cardiac IKs channel complex

    DEFF Research Database (Denmark)

    Strutz-Seebohm, Nathalie; Pusch, Michael; Wolf, Steffen;

    2011-01-01

    Accessory ß-subunits of the KCNE gene family modulate the function of various cation channel a-subunits by the formation of heteromultimers. Among the most dramatic changes of biophysical properties of a voltage-gated channel by KCNEs are the effects of KCNE1 on KCNQ1 channels. KCNQ1 and KCNE1 are...... believed to form nativeI(Ks) channels. Here, we characterize molecular determinants of KCNE1 interaction with KCNQ1 channels by scanning mutagenesis, double mutant cycle analysis, and molecular dynamics simulations. Our findings suggest that KCNE1 binds to the outer face of the KCNQ1 channel pore domain......, modifies interactions between voltage sensor, S4-S5 linker and the pore domain, leading to structural modifications of the selectivity filter and voltage sensor domain. Molecular dynamics simulations suggest a stable interaction of the KCNE1 transmembrane a-helix with the pore domain S5/S6 and part of the...

  6. Crystal structure of the drug-resistant S31N influenza M2 proton channel.

    Science.gov (United States)

    Thomaston, Jessica L; DeGrado, William F

    2016-08-01

    The M2 protein is a small proton channel found in the influenza A virus that is necessary for viral replication. The M2 channel is the target of a class of drugs called the adamantanes, which block the channel pore and prevent the virus from replicating. In recent decades mutations have arisen in M2 that prevent the adamantanes from binding to the channel pore, with the most prevalent of these mutations being S31N. Here we report the first crystal structure of the S31N mutant crystallized using lipidic cubic phase crystallization techniques and solved to 1.59 Å resolution. The Asn31 residues point directly into the center of the channel pore and form a hydrogen-bonded network that disrupts the drug-binding site. Ordered waters in the channel pore form a continuous hydrogen bonding network from Gly34 to His37. PMID:27082171

  7. Mechanistic signs of double-barreled structure in a fluoride ion channel.

    Science.gov (United States)

    Last, Nicholas B; Kolmakova-Partensky, Ludmila; Shane, Tania; Miller, Christopher

    2016-01-01

    The Fluc family of F(-) ion channels protects prokaryotes and lower eukaryotes from the toxicity of environmental F(-). In bacteria, these channels are built as dual-topology dimers whereby the two subunits assemble in antiparallel transmembrane orientation. Recent crystal structures suggested that Fluc channels contain two separate ion-conduction pathways, each with two F(-) binding sites, but no functional correlates of this unusual architecture have been reported. Experiments here fill this gap by examining the consequences of mutating two conserved F(-)-coordinating phenylalanine residues. Substitution of each phenylalanine specifically extinguishes its associated F(-) binding site in crystal structures and concomitantly inhibits F(-) permeation. Functional analysis of concatemeric channels, which permit mutagenic manipulation of individual pores, show that each pore can be separately inactivated without blocking F(-) conduction through its symmetry-related twin. The results strongly support dual-pathway architecture of Fluc channels. PMID:27449280

  8. Structural elements in the Girk1 subunit that potentiate G protein-gated potassium channel activity.

    Science.gov (United States)

    Wydeven, Nicole; Young, Daniele; Mirkovic, Kelsey; Wickman, Kevin

    2012-12-26

    G protein-gated inwardly rectifying K(+) (Girk/K(IR)3) channels mediate the inhibitory effect of many neurotransmitters on excitable cells. Girk channels are tetramers consisting of various combinations of four mammalian Girk subunits (Girk1 to -4). Although Girk1 is unable to form functional homomeric channels, its presence in cardiac and neuronal channel complexes correlates with robust channel activity. This study sought to better understand the potentiating influence of Girk1, using the GABA(B) receptor and Girk1/Girk2 heteromer as a model system. Girk1 did not increase the protein levels or alter the trafficking of Girk2-containing channels to the cell surface in transfected cells or hippocampal neurons, indicating that its potentiating influence involves enhancement of channel activity. Structural elements in both the distal carboxyl-terminal domain and channel core were identified as key determinants of robust channel activity. In the distal carboxyl-terminal domain, residue Q404 was identified as a key determinant of receptor-induced channel activity. In the Girk1 core, three unique residues in the pore (P) loop (F137, A142, Y150) were identified as a collective potentiating influence on both receptor-dependent and receptor-independent channel activity, exerting their influence, at least in part, by enhancing mean open time and single-channel conductance. Interestingly, the potentiating influence of the Girk1 P-loop is tempered by residue F162 in the second membrane-spanning domain. Thus, discontinuous and sometime opposing elements in Girk1 underlie the Girk1-dependent potentiation of receptor-dependent and receptor-independent heteromeric channel activity. PMID:23236146

  9. Spatial Diversity in Composition and Structure of Nekton in Ngenep Spring and its Channels, Karangploso - Malang

    Directory of Open Access Journals (Sweden)

    Lia Hapsari

    2014-04-01

    Full Text Available Water springs and its channel degradation due to anthropogenic pollution may alter the community structure of aquatic organisms. Water spring degradation tehrefore affect the quality of water as tourism resources. This study aims to investigate the changes in community structure of nekton  and determine the relationships between water quality characteristics to the diversity of nekton.  The field survey was set up in Ngenep spring and its channels. Results showed that nekton species found in Ngenep spring and its channels consists of 4 classes, 4 orders, 6 families, and 7 species with total 627 nekton samples. It is comprises of fishes, shrimp, frogs and waterstriders. Nekton diversity index (H’ in the spring and irrigation channel were in moderate level (1channel was low (0,67. Evenness values of nekton ranged 0,24 – 0,53, whereas dominancy index of nekton ranged 0,41 – 0,74. Evenness value in settlement channel was very low (0, 24 with high dominancy index (0, 74; it indicates that nekton species were spread not evenly in the channel, it dominated by fish Rasbora sp. (highest IVI, 184,95. There were spatial variations of  physico-chemical water qualitiy parameters in Ngenep springs and its channels (temperature, stream velocity, turbidity, conductivity, pH, DO, BOD and TOM which affected to nekton diversity and community structure. Clustering analyses and PCA result shows correlation pattern between nekton distribution with physico-chemical water quality parameters. However, physico-chemical water quality parameters in Ngenep springs and its channel were still optimum as nekton habitat (PP No. 82/ 2001. Keywords: Community structure, Nekton, Spatial diversity, Spring, Water channel

  10. Direct visualization of the trimeric structure of the ASIC1a channel, using AFM imaging.

    Science.gov (United States)

    Carnally, Stewart M; Dev, Harveer S; Stewart, Andrew P; Barrera, Nelson P; Van Bemmelen, Miguel X; Schild, Laurent; Henderson, Robert M; Edwardson, J Michael

    2008-08-01

    There has been confusion about the subunit stoichiometry of the degenerin family of ion channels. Recently, a crystal structure of acid-sensing ion channel (ASIC) 1a revealed that it assembles as a trimer. Here, we used atomic force microscopy (AFM) to image unprocessed ASIC1a bound to mica. We detected a mixture of subunit monomers, dimers and trimers. In some cases, triple-subunit clusters were clearly visible, confirming the trimeric structure of the channel, and indicating that the trimer sometimes disaggregated after adhesion to the mica surface. This AFM-based technique will now enable us to determine the subunit arrangement within heteromeric ASICs. PMID:18514062

  11. Direct visualization of the trimeric structure of the ASIC1a channel, using AFM imaging

    International Nuclear Information System (INIS)

    There has been confusion about the subunit stoichiometry of the degenerin family of ion channels. Recently, a crystal structure of acid-sensing ion channel (ASIC) 1a revealed that it assembles as a trimer. Here, we used atomic force microscopy (AFM) to image unprocessed ASIC1a bound to mica. We detected a mixture of subunit monomers, dimers and trimers. In some cases, triple-subunit clusters were clearly visible, confirming the trimeric structure of the channel, and indicating that the trimer sometimes disaggregated after adhesion to the mica surface. This AFM-based technique will now enable us to determine the subunit arrangement within heteromeric ASICs

  12. Experimental analysis of the flow structure in the laboratory model of SOFC fuel cell channels

    International Nuclear Information System (INIS)

    In the presented paper a flow structure in the gas channel of planar SOFC fuel cell is presented. The model taken for analysis was constructed based on the channel geometry manufactured by SOFC Power company. The shape of a channel was rectangular filled with large number of obstacles which role is to divide the flow into segments with possibly homogenous velocity distribution. The model itself was constructed from Plexiglas and the reactant gases flow was modelled by water motion. To investigate and visualize the flow structures a PIV technique was applied. Three different flow rates were taken for investigations and the flow uniformity and time dependence was studied.

  13. A structural view of ligand-dependent activation in thermoTRP channels

    Directory of Open Access Journals (Sweden)

    SebastianBrauchi

    2014-05-01

    Full Text Available Transient Receptor Potential (TRP proteins are a large family of ion channels, grouped intoseven sub-families. Although great advances have been made regarding the activation andmodulation of TRP channel activity, detailed molecular mechanisms governing TRPchannel gating are still needed. Sensitive to electric, chemical, mechanical, and thermalcues, TRP channels are tightly associated with the detection and integration of sensoryinput, emerging as a model to study the polymodal activation of ion channel proteins.Among TRP channels, the temperature-activated kind constitute a subgroup by itself,formed by Vanilloid receptors 1-4, Melastatin receptors 2, 4, 5 and 8, TRPC5, and TRPA1.Some of the so-called “thermoTRP” channels participate in the detection of noxious stimulimaking them an interesting pharmacological target for the treatment of pain. However, thepoor specificity of the compounds available in the market represents an important obstacleto overcome. Understanding the molecular mechanics underlying ligand-dependentmodulation of TRP channels may help with the rational design of novel syntheticanalgesics. The present review focuses on the structural basis of ligand-dependentactivation of TRPV1 and TRPM8 channels. Special attention is drawn to the dissection ofligand-binding sites within TRPV1, PIP 2 -dependent modulation of TRP channels, and thestructure of natural and synthetic ligands.

  14. A LINEAR THEORY FOR DISTURBANCE OF COHERENT STRUCTURE AND MECHANISM OF SAND WAVES IN OPEN-CHANNEL FLOW

    Institute of Scientific and Technical Information of China (English)

    Yuchuan BAI; Andreas MALCHEREK; Changbo JIANG

    2001-01-01

    The formation of sand wave is such a process in which the roughness and discontinuity of the original bed surface cause the disturbance of the bottom laminar flow in an open channel,and the development of the disturbance in turn leads to instability of the flow and the appearance of the coherent structure. The evolution and development of the coherent structure further promote the undulations of bed surface and sand waves rise finally. The sand wave is explained as a result of action that the bed sediment particles are disturbed by the coherent structure. This study shows that the sand wave formation is the result of disturbance action of neutral coherent structure, and the sand wave shape obtained in computations is identical to the practical one.

  15. Computational Structural Pharmacology and Toxicology of Voltage-Gated Sodium Channels.

    Science.gov (United States)

    Zhorov, B S; Tikhonov, D B

    2016-01-01

    Voltage-gated sodium channels are targets for many toxins and medically important drugs. Despite decades of intensive studies in industry and academia, atomic mechanisms of action are still not completely understood. The major cause is a lack of high-resolution structures of eukaryotic channels and their complexes with ligands. In these circumstances a useful approach is homology modeling that employs as templates X-ray structures of potassium channels and prokaryotic sodium channels. On one hand, due to inherent limitations of this approach, results should be treated with caution. In particular, models should be tested against relevant experimental data. On the other hand, docking of drugs and toxins in homology models provides a unique possibility to integrate diverse experimental data provided by mutational analysis, electrophysiology, and studies of structure-activity relations. Here we describe how homology modeling advanced our understanding of mechanisms of several classes of ligands. These include tetrodotoxins and mu-conotoxins that block the outer pore, local anesthetics that block of the inner pore, batrachotoxin that binds in the inner pore but, paradoxically, activates the channel, pyrethroid insecticides that activate the channel by binding at lipid-exposed repeat interfaces, and scorpion alpha and beta-toxins, which bind between the pore and voltage-sensing domains and modify the channel gating. We emphasize importance of experimental data for elaborating the models. PMID:27586283

  16. Structure-Driven Pharmacology of Transient Receptor Potential Channel Vanilloid 1.

    Science.gov (United States)

    Díaz-Franulic, Ignacio; Caceres-Molina, Javier; Sepulveda, Romina V; Gonzalez-Nilo, Fernando; Latorre, Ramon

    2016-09-01

    The transient receptor potential vanilloid 1 (TRPV1) ion channel is a polymodal receptor that mediates the flux of cations across the membrane in response to several stimuli, including heat, voltage, and ligands. The best known agonist of TRPV1 channels is capsaicin, the pungent component of "hot" chili peppers. In addition, peptides found in the venom of poisonous animals, along with the lipids phosphatidylinositol 4,5-biphosphate, lysophosphatidic acid, and cholesterol, bind to TRPV1 with high affinity to modulate channel gating. Here, we discuss the functional evidence regarding ligand-dependent activation of TRPV1 channels in light of structural data recently obtained by cryoelectron microscopy. This review focuses on the mechanistic insights into ligand binding and allosteric gating of TRPV1 channels and the relevance of accurate polymodal receptor biophysical characterization for drug design in novel pain therapies. PMID:27335334

  17. Final report for the virtual channel encryptor laboratory directed research and development project

    Energy Technology Data Exchange (ETDEWEB)

    Gibson, D.J.; Sarfaty, R.A.

    1997-08-01

    A workstation with a single physical connection to a data communications network may have a requirement for simultaneous `virtual` communication channels to more than one destination. This report describes the development of techniques based on the Data Encryption Standard (DES) which encrypt these virtual channels to secure the data being transmitted against unauthorized access. A software module has been developed for the UNIX operating system using these techniques for encryption, and some development has also been done on a hardware device to be included between the workstation and network which can also provide these functions. The material presented in this report will be useful to those with a need to protect information in data communications systems from unauthorized access.

  18. Algorithms and data structures for the EPICS channel archiver

    International Nuclear Information System (INIS)

    Diamond Light Source records 3 GB of process data per day and has a 15 TB archive on line using the EPICS Channel Archiver. This paper describes recent modifications to the software to improve performance and usability. The file-size limit on the R-Tree index has been removed, allowing all archived data to be searchable from one index. A decimation system works directly on compressed archives from a backup server and produces multi-rate reduced data with minimum and maximum values to support time efficient summary reporting and range queries. The XMLRPC interface has been extended to provide binary data transfer to clients needing large amounts of raw data. (authors)

  19. Development of fibre channel disk clusters. Final report for period September 2, 1998 - March 17, 1999

    International Nuclear Information System (INIS)

    This report documents the accomplishments of a Phase I project whose purpose was to demonstrate feasibility of developing inexpensive and fast data storage using multi-host Fibre Channel disk clusters. In Phase I, a working file system called ZFS was developed and tested. The ZFS approach was designed to be suited for high energy physics applications, but is general and flexible enough to be useful for other high-volume applications. The ZFS approach, which borrows from the networking concept of cut-through routing, uses Linux boxes and disk clusters in a Fibre Channel--Arbitrated Loop architecture. In ZFS, file locking and other meta-data level operations are carried out over the primary data network, after which all data are sent directly over a Fibre Channel between the workstation and the disk cluster. No intermediate server is required. Substantially higher throughputs than in traditional networked disk architectures have been demonstrated. The ZFS architecture is described and tests of the first implementation of ZFS at Fermilab are discussed. The current system is implemented for Linux and is being optimized for Fermilab's needs, but extensions to other operating systems and other data-intensive applications are clearly foreseen

  20. Lithographic definition of channel and void structures in multilayer PZT microactuators

    Science.gov (United States)

    Rosqvist, Tobias; Johansson, Stefan A. I.

    1999-10-01

    We are investigating techniques to fabricate advanced microactuators cost efficiently and in particular to combine silicon microstructures with multilayer PZT microelements. Aiming at an increased freedom in design of multilayer PZT elements, various process steps to build channel and void structures in the actuator body are investigated. In a multilayer actuator, channels and voids can be used for transportation of fluids or to change transducer properties. A PZT green ceramic body is built with internal sacrificial structures defined using photolithography and patterned polymer foil and these structures are removed during binder burnout. In difference to conventional green tape lamination the technique used in the presented experiments, wet building, tends to planarize consecutive layers cast. This is particularly advantageous for high aspect ratio sacrificial structures. Results show that possible channel dimensions range from 10 micrometers up to above 200 micrometers . The lower channel dimension limitation is determined by the surface roughness of a cast green layer and the grain growth during sintering. No sagging of the channels is observed at the investigated channel dimensions. The mechanical and chemical stability of the sacrificial material during exposure to solvent and moderate heat is found to be important. The large scale manufacturing aspect of the investigated technique is also discussed.

  1. Tensor based structure estimation in multi-channel images

    DEFF Research Database (Denmark)

    Schou, Jesper; Dierking, Wolfgang; Skriver, Henning

    2000-01-01

    second part tensors are used for representing the structure information. This approach has the advantage, that tensors can be averaged either spatially or by applying several images, and the resulting tensor provides information of the average strength as well as orientation of the structure. The...

  2. Covariance-based Spatial Channel Structure Emulation for MIMO OTA Testing

    DEFF Research Database (Denmark)

    Tsakalaki, Elpiniki; Alrabadi, Osama; Fan, Wei;

    2014-01-01

    The paper presents a general framework for recreating the spatial channel structure in a MIMO over-the-air (OTA) multiprobe anechoic chamber testing setup. The idea is to find the power weights of the spatial taps (antenna probes) that minimize a certain distance between the spatial channel...... covariance matrix corresponding to the desired (continuous) channel and the covariance related to the emulated (discrete) channel within the test area. Unlike previous methods that merely rely on the spatial correlation coefficient, the proposed approach properly accounts for emulating the power imbalance...... among the antennas-under-test by considering the whole spatial covariance structure. The simulation results validate the improved performance of the suggested approach in terms of emulation accuracy compared to the key emulation methods proposed in the literature....

  3. 75 FR 21651 - Final Environmental Impact Statement; Prisoners Harbor Coastal Wetland Restoration Plan, Channel...

    Science.gov (United States)

    2010-04-26

    ... National Park Service Final Environmental Impact Statement; Prisoners Harbor Coastal Wetland Restoration... impacts of restoring the coastal wetland and lower riparian corridor at Prisoners Harbor on Santa Cruz... productivity by removing fill and restoring the historic wetland; (3) provide an enhanced visitor experience...

  4. An approach to implement virtual channels for flowing magnetic beads

    International Nuclear Information System (INIS)

    This work demonstrates the feasibility of a novel microfluidic system with virtual channels formed by ‘walls’ of magnetic fields, including collecting channels, transporting channels and function channels. The channels are defined by the nickel patterns. With its own ferromagnetism, nickel can be magnetized using an external magnetic field; the nickel structures then generate magnetic fields that can either guide or trap magnetic beads. A glass substrate is sandwiched between the liquid containing magnetic beads and the chip with nickel structures, preventing the liquid from directly contacting the nickel. In this work, collecting channels, transporting channels and function channels are displayed sequentially. In the collecting channel portion, channels with different shapes are compared. Next, in the transporting channel portion we demonstrate I-, S- and Y-shaped channels can steer magnetic beads smoothly. Finally, in the function channel portion, a switchable trapping channel implemented with a bistable mechanism performs the passing and blocking of a magnetic bead. (paper)

  5. Toxic β-Amyloid (Aβ) Alzheimer's Ion Channels: From Structure to Function and Design

    Science.gov (United States)

    Nussinov, Ruth

    2012-02-01

    Full-length amyloid beta peptides (Aβ1-40/42) form neuritic amyloid plaques in Alzheimer's disease (AD) patients and are implicated in AD pathology. Recent biophysical and cell biological studies suggest a direct mechanism of amyloid beta toxicity -- ion channel mediated loss of calcium homeostasis. Truncated amyloid beta fragments (Aβ11-42 and Aβ17-42), commonly termed as non-amyloidogenic are also found in amyloid plaques of Alzheimer's disease (AD) and in the preamyloid lesions of Down's syndrome (DS), a model system for early onset AD study. Very little is known about the structure and activity of these smaller peptides although they could be key AD and DS pathological agents. Using complementary techniques of explicit solvent molecular dynamics (MD) simulations, atomic force microscopy (AFM), channel conductance measurements, cell calcium uptake assays, neurite degeneration and cell death assays, we have shown that non-amyloidogenic Aβ9-42 and Aβ17-42 peptides form ion channels with loosely attached subunits and elicit single channel conductances. The subunits appear mobile suggesting insertion of small oligomers, followed by dynamic channel assembly and dissociation. These channels allow calcium uptake in APP-deficient cells and cause neurite degeneration in human cortical neurons. Channel conductance, calcium uptake and neurite degeneration are selectively inhibited by zinc, a blocker of amyloid ion channel activity. Thus truncated Aβ fragments could account for undefined roles played by full length Aβs and provide a novel mechanism of AD and DS pathology. The emerging picture from our large-scale simulations is that toxic ion channels formed by β-sheets are highly polymorphic, and spontaneously break into loosely interacting dynamic units (though still maintaining ion channel structures as imaged with AFM), that associate and dissociate leading to toxic ion flux. This sharply contrasts intact conventional gated ion channels that consist of tightly

  6. In-channel Restoration Structures and the Implications on Hyporheic Exchange: a Laboratory Experiment

    Science.gov (United States)

    Han, B.; Chu, H. H.; Endreny, T. A.

    2014-12-01

    In-channel structures, i.e. cross-vanes and J-hooks, are commonly installed in river restoration projects to modify the streambed morphology and stream water surface profile, and are known to change hyporhiec exchange flux and habitats for riverine animals. However, few studies have continuous and accurate pre- and post-treatment data to evaluate the impact of these structures on channel hydraulic gradients and morphology. To quantify the effects of in-channel structures, we developed a scaled physical model of a meandering stream with a cross-vane and 6 J-hooks on a mobile-bed river table. Close-range photogrammetry technique was applied to obtain 3-D water and ground surface profiles with sub-millimeter vertical accuracy and horizontal resolution. The experiment was compared with a control experiment without structures while maintaining the same initial conditions of river bed, floodplain and stream flow. Results indicated that the cross-vane caused an average local head loss that represented 16% of the total stream reach head loss, and a 74% increase in channel load in the entire stream reach. Most J-hooks can create stepwise patterns in stream longitudinal profile, and cross-vane can create even more significant ones. Hydraulic gradients across the intra-meander zone also increased with in-channel structures, i.e. from 2.5% to 3.5% at the meander neck. Scour pools developed downstream of the cross-vane, and mostly around the 4 meander apex J-hooks at their hooked tip. Backwater caused by the cross-vane steepened the local water table profile by an additional 4.2%, and was the primary driver of statistically significant hydraulic gradient increase. Reach scale water and streambed surface profiles from our study provided detailed data to improve the understanding of in-channel structure effects, and may serve as reliable data source in computational modeling of hyporheic exchange.

  7. Paramagnetic Structures within a Microfluidic Channel for Enhanced Immunomagnetic Isolation and Surface Patterning of Cells

    Science.gov (United States)

    Sun, Chen; Hassanisaber, Hamid; Yu, Richard; Ma, Sai; Verbridge, Scott S.; Lu, Chang

    2016-07-01

    In this report, we demonstrate a unique method for embedding magnetic structures inside a microfluidic channel for cell isolation. We used a molding process to fabricate these structures out of a ferrofluid of cobalt ferrite nanoparticles. We show that the embedded magnetic structures significantly increased the magnetic field in the channel, resulting in up to 4-fold enhancement in immunomagnetic capture as compared with a channel without these embedded magnetic structures. We also studied the spatial distribution of trapped cells both experimentally and computationally. We determined that the surface pattern of these trapped cells was determined by both location of the magnet and layout of the in-channel magnetic structures. Our magnetic structure embedded microfluidic device achieved over 90% capture efficiency at a flow velocity of 4 mm/s, a speed that was roughly two orders of magnitude faster than previous microfluidic systems used for a similar purpose. We envision that our technology will provide a powerful tool for detection and enrichment of rare cells from biological samples.

  8. Duplex-like structures in submarine fan channels, Ouachita Mountains, Arkansas

    Energy Technology Data Exchange (ETDEWEB)

    Shanmugam, G.; Moiola, R.J.; Sales, J.K.

    1988-03-01

    Submarine fan channel sequences of the Jackfork Formation (Lower Pennsylvanian) at DeGray Dam section in the Ouachita Mountains, Arkansas, contain discrete units (10-75 cm thick) with moderately dipping (25/sup 0/-40/sup 0/), sigmoidal imbricate slices. Adjacent units with opposing imbricate slices are common. The sigmoidal structures are similar in geometry to a tectonic feature known as a duplex. A tectonic origin of sigmoidal structures, however, seems unlikely because opposing directions of imbrication in adjacent units would require an unrealistic tectonic movement history for the area. The authors propose that the Jackfork sigmoidal structures were formed by a process kinematically similar to that responsible for generating duplex structures. Unlike tectonic duplexes, however, the sigmoidal structures were formed by soft-sediment deformation of sand and mud layers as high-energy sediment gravity flows glided over these layers. Sediment gravity flows, responsible for forming the sigmoidal deformation, were probably generated by slumping of adjacent channel walls. Dip direction of sigmoidal slices is perpendicular to channel axes. Thus, recognition of sigmoidal deformation structures may be useful in inferring the trend of channels in ancient submarine fan complexes.

  9. Paramagnetic Structures within a Microfluidic Channel for Enhanced Immunomagnetic Isolation and Surface Patterning of Cells

    Science.gov (United States)

    Sun, Chen; Hassanisaber, Hamid; Yu, Richard; Ma, Sai; Verbridge, Scott S.; Lu, Chang

    2016-01-01

    In this report, we demonstrate a unique method for embedding magnetic structures inside a microfluidic channel for cell isolation. We used a molding process to fabricate these structures out of a ferrofluid of cobalt ferrite nanoparticles. We show that the embedded magnetic structures significantly increased the magnetic field in the channel, resulting in up to 4-fold enhancement in immunomagnetic capture as compared with a channel without these embedded magnetic structures. We also studied the spatial distribution of trapped cells both experimentally and computationally. We determined that the surface pattern of these trapped cells was determined by both location of the magnet and layout of the in-channel magnetic structures. Our magnetic structure embedded microfluidic device achieved over 90% capture efficiency at a flow velocity of 4 mm/s, a speed that was roughly two orders of magnitude faster than previous microfluidic systems used for a similar purpose. We envision that our technology will provide a powerful tool for detection and enrichment of rare cells from biological samples. PMID:27388549

  10. Solution structure of the calcium channel antagonist omega-conotoxin GVIA.

    OpenAIRE

    Skalicky, J. J.; Metzler, W. J.; Ciesla, D. J.; Galdes, A.; Pardi, A

    1993-01-01

    The three-dimensional solution structure is reported for omega-conotoxin GVIA, which is a potent inhibitor of presynaptic calcium channels in vertebrate neuromuscular junctions. Structures were generated by a hybrid distance geometry and restrained molecular dynamics approach using interproton distance, torsion angle, and hydrogen-bonding constraints derived from 1H NMR data. Conformations of GVIA with low constraint violations converged to a common peptide fold. The secondary structure in th...

  11. Effect of macromolecular polymer structures on drag reduction in a turbulent channel flow

    International Nuclear Information System (INIS)

    This paper presents the influence of injected polymer solutions on turbulence in fully developed channel flows. In particular, it investigates the impact of concentration and mixing of the polymer solution on drag reduction. It is observed, via flow visualization and birefringence measurements, that for large injection concentrations macromolecular polymer structures exist in the flow. They are found to be mostly located in the neighborhood of the channel centerline. Laser Doppler velocimetry was used to characterize the mean and turbulent flow with and without the presence of macromolecular polymer structures

  12. Structure of two-phase slug flow in vertical channels

    International Nuclear Information System (INIS)

    Based on a suggested model of two-phase slug flow in a wide range of varying regime parameters the available literary data and experimental data obtained by the authors on the intensity of void fraction fluctuations, lengths of slugs and liquid plugs are generalized. It is shown that the magnitude of the void fraction is the determining parameter in the formation of the flow regime and structure. The technique for calculating the characteristic frequency of fluctuations of a two-phase flow is suggested

  13. Structural Analyses of the Ankyrin Repeat Domain of TRPV6 and Related TRPV Ion Channels

    Energy Technology Data Exchange (ETDEWEB)

    Phelps, C.B.; Huang, R.J.; Lishko, P.V.; Wang, R.R.; Gaudet, R. (Harvard)

    2008-06-03

    Transient receptor potential (TRP) proteins are cation channels composed of a transmembrane domain flanked by large N- and C-terminal cytoplasmic domains. All members of the vanilloid family of TRP channels (TRPV) possess an N-terminal ankyrin repeat domain (ARD). The ARD of mammalian TRPV6, an important regulator of calcium uptake and homeostasis, is essential for channel assembly and regulation. The 1.7 A crystal structure of the TRPV6-ARD reveals conserved structural elements unique to the ARDs of TRPV proteins. First, a large twist between the fourth and fifth repeats is induced by residues conserved in all TRPV ARDs. Second, the third finger loop is the most variable region in sequence, length and conformation. In TRPV6, a number of putative regulatory phosphorylation sites map to the base of this third finger. Size exclusion chromatography and crystal packing indicate that the TRPV6-ARD does not assemble as a tetramer and is monomeric in solution. Adenosine triphosphate-agarose and calmodulin-agarose pull-down assays show that the TRPV6-ARD does not interact with either ligand, indicating a different functional role for the TRPV6-ARD than in the paralogous thermosensitive TRPV1 channel. Similar biochemical findings are also presented for the highly homologous mammalian TRPV5-ARD. The implications of the structural and biochemical data on the role of the ankyrin repeats in different TRPV channels are discussed.

  14. Studying the operation characteristics and structure of vertical channel copper-phthalocyanine organic semiconductor transistor

    Institute of Scientific and Technical Information of China (English)

    ZHU Min; SONG Ming-xin; GUI Tai-long; WANG Xuan; YIN Jing-hua; WANG Dong-xing; ZHAO Hong

    2005-01-01

    The creation of Au/CuPc/Al/CuPc/structure is a perpendicular type electricity found in the channel of organic static induction transistor. In the following we analyze transistor operation characteristics and machine structural relation. The results express that the transistor drives the voltage low and has no-saturation currentvoltage characteristics. Its operation characteristics are dependant on gate bias voltage and the construction of the aluminum electrode.The vertical channel of organic static induction transistor (OSIT) , with structure of Au/CuPc/Al/CuPc/Cu, has been determined. According to the test results, the relation of its operation characteristics and device structure was analyzed. The results show that this transistor has a low driving voltage and unsaturation Ⅰ-Ⅴ characteristics. Its operation characteristics are dependant on gate bias voltage and the structure of the aluminum electrode.

  15. Structure and permeability of ion-channels by integrated AFM and waveguide TIRF microscopy.

    Science.gov (United States)

    Ramachandran, Srinivasan; Arce, Fernando Teran; Patel, Nirav R; Quist, Arjan P; Cohen, Daniel A; Lal, Ratnesh

    2014-01-01

    Membrane ion channels regulate key cellular functions and their activity is dependent on their 3D structure. Atomic force microscopy (AFM) images 3D structure of membrane channels placed on a solid substrate. Solid substrate prevents molecular transport through ion channels thus hindering any direct structure-function relationship analysis. Here we designed a ~70 nm nanopore to suspend a membrane, allowing fluidic access to both sides. We used these nanopores with AFM and total internal reflection fluorescence microscopy (TIRFM) for high resolution imaging and molecular transport measurement. Significantly, membranes over the nanopore were stable for repeated AFM imaging. We studied structure-activity relationship of gap junction hemichannels reconstituted in lipid bilayers. Individual hemichannels in the membrane overlying the nanopore were resolved and transport of hemichannel-permeant LY dye was visualized when the hemichannel was opened by lowering calcium in the medium. This integrated technique will allow direct structure-permeability relationship of many ion channels and receptors. PMID:24651823

  16. The $s$-channel Charged Higgs in the Fully Hadronic Final State at LHC

    CERN Document Server

    Ahmed, Ijaz

    2016-01-01

    With the current measurements performed by CMS and ATLAS experiments, the light charged Higgs scenario ($m_{H^{\\pm}}$ $<$ 160 GeV), is excluded for most of the parameter space in the context of MSSM. However, there is still possibility to look for heavy charged Higgs boson particularly in the $s$-channel single top production process where the charged Higgs may appear as a heavy resonance state and decay to $t\\bar{b}$. The production process under consideration in this paper is $pp \\ra H^{\\pm} \\ra t\\bar{b}~+~h.c.$, where the top quark decays to $W^{+}b$ and $W^{+}$ boson subsequently decays to two light jets. It is shown that despite the presence of large QCD and electroweak background events, the charged Higgs signal can be extracted and observed at a large area of MSSM parameter space ($m_{H^{\\pm}}$,tan$\\beta$) at LHC. The observability of charged Higgs is potentially demonstrated with 5$\\sigma$ contours and $95\\%$ confidence level exclusion curves at different integrated LHC luminosities assuming a nomi...

  17. The s-channel charged Higgs in the fully hadronic final state at LHC

    Energy Technology Data Exchange (ETDEWEB)

    Ahmed, Ijaz [University of Malaya, National Center for Particle Physics, Kuala Lumpur (Malaysia); COMSATS Institute of Information Technology (CIIT), Islamabad (Pakistan); Hashemi, Majid [Shiraz University, Physics Department and Biruni Observatory, College of Sciences, Shiraz (Iran, Islamic Republic of); Tajuddin, Wan Ahmad [University of Malaya, National Center for Particle Physics, Kuala Lumpur (Malaysia)

    2016-04-15

    With the current measurements performed by CMS and ATLAS experiments, the light charged Higgs scenario (m{sub H}{sup {sub ±}} < 160 GeV), is excluded for most of the parameter space in the context of MSSM. However, there is still possibility to look for heavy charged Higgs boson particularly in the s-channel single top production process where the charged Higgs may appear as a heavy resonance state and decay to t anti b. The production process under consideration in this paper is pp → H{sup ±} → t anti b + h.c., where the top quark decays to W{sup +}b and W{sup +} boson subsequently decays to two light jets. It is shown that despite the presence of large QCD and electroweak background events, the charged Higgs signal can be extracted and observed at a large area of MSSM parameter space (m{sub H}{sup {sub ±}}, tanβ) at LHC. The observability of charged Higgs is potentially demonstrated with 5σ contours and 95% confidence level exclusion curves at different integrated LHC luminosities assuming a nominal center of mass energy of √(s) = 14 TeV. (orig.)

  18. Study of the structure of the particles of channel black of phase-contrasting electron microscopy of high resolution

    Energy Technology Data Exchange (ETDEWEB)

    Varlakov, V.P.; Fialkov, A.S.; Smirnov, B.N.

    1981-01-01

    The structure of channel black, DG-100, in the initial and graphitized states has been studied by phase-contrasting electron microscopy with a direct resolution of the carbon layers. An individual carbon layer is the main structural element of carbon black. The structure of channel black in the graphitized state looks like a hollow closed polyhedron made up of bundles of continuous carbon layers which can bend and become deformed to a great extent, testifying to the polymeric nature of the structure of channel black. The authors give an interpretation of the roentgen values of the 'dimensions of crystallites' in channel black.

  19. Structural basis for KV7.1/KCNEx interactions in the IKs channel complex

    DEFF Research Database (Denmark)

    Lundby, Alicia; Tseng, Gea-Ny; Schmitt, Nicole

    2010-01-01

    KCNE1 solution structure by NMR spectroscopy in conjunction with biochemical assays addressing K(V)7.1/KCNE1 residue interactions has provided new insights into the structural basis for K(V)7.1 modulation by KCNE1. Recent evidence further suggests that KCNE2 may associate with the K(V)7.1/KCNE1 channel......The cardiac I(Ks) current is involved in action potential repolarization, where its primary function is to limit action potential prolongation during sympathetic stimulation. The I(Ks) channel is mainly composed of K(V)7.1 ion channels associated with KCNE1 auxiliary subunits. The availability of...

  20. The lifting scheme of 4-channel orthogonal wavelet transforms

    Institute of Scientific and Technical Information of China (English)

    PENG Lizhong; CHU Xiaoyong

    2006-01-01

    The 4-channel smooth wavelets with linear phase and orthogonality are designed from the 2-channel orthogonal wavelets with high transfer vanishing moments. Reversely, for simple lifting scheme of such 4-channel orthogonal wavelet transforms, a new 2-channel orthogonal wavelet associated with this 4-channel wavelet is constructed. The new 2-channel wavelet has at least the same number of vanishing moments as the associated 4-channel one. Finally, by combining the two such 2-channel wavelet systems, the lifting scheme of 4-channel orthogonal wavelet transform, which has simple structure and is easy to apply, is presented.

  1. Numerical investigation on the flow structures in a narrow confined channel with staggered jet array arrangement

    Institute of Scientific and Technical Information of China (English)

    Liu Haiyong; Liu Cunliang; Wu Wenming

    2015-01-01

    A series of numerical analyses have been performed to investigate the flow structures in a narrow confined channel with 12 staggered circular impingement holes and one bigger exit hole. The flow enters the channel through the impingement holes and exits through the far end outlet. The flow fields corresponding to two jet Reynolds numbers (25000 and 65000) and three channel con-figurations with different ratios of the channel height to the impingement hole diameter (Zr=1, 3, 5) are analyzed by solving the Reynolds averaged Navier–Stokes equations with the realizable k–e turbulence model. Detailed flow field information including the secondary flow, the interaction between the jets and the cross flow, and flow distribution along the channel has been obtained. Comparisons between the numerical and experimental results of the flow fields at the four planes along the channel are performed to validate the numerical method. The calculated impingement pattern, high velocity flow distribution, low velocity separation region and vortices are in good agreement with the experimental data, implying the validity and effectiveness of the employed numerical approach for analyzing relevant flow field.

  2. Evolutionary and structural perspectives of plant cyclic nucleotide-gated cation channels

    KAUST Repository

    Zelman, Alice K.

    2012-05-29

    Ligand-gated cation channels are a frequent component of signaling cascades in eukaryotes. Eukaryotes contain numerous diverse gene families encoding ion channels, some of which are shared and some of which are unique to particular kingdoms. Among the many different types are cyclic nucleotide-gated channels (CNGCs). CNGCs are cation channels with varying degrees of ion conduction selectivity. They are implicated in numerous signaling pathways and permit diffusion of divalent and monovalent cations, including Ca2+ and K+. CNGCs are present in both plant and animal cells, typically in the plasma membrane; recent studies have also documented their presence in prokaryotes. All eukaryote CNGC polypeptides have a cyclic nucleotide-binding domain and a calmodulin binding domain as well as a six transmembrane/one pore tertiary structure. This review summarizes existing knowledge about the functional domains present in these cation-conducting channels, and considers the evidence indicating that plant and animal CNGCs evolved separately. Additionally, an amino acid motif that is only found in the phosphate binding cassette and hinge regions of plant CNGCs, and is present in all experimentally confirmed CNGCs but no other channels was identified. This CNGC-specific amino acid motif provides an additional diagnostic tool to identify plant CNGCs, and can increase confidence in the annotation of open reading frames in newly sequenced genomes as putative CNGCs. Conversely, the absence of the motif in some plant sequences currently identified as probable CNGCs may suggest that they are misannotated or protein fragments. 2012 Zelman, Dawe, Gehring and Berkowitz.

  3. Building channels for transparent risk assessment. Final report RISCOM pilot project

    International Nuclear Information System (INIS)

    Recent developments in the Swedish programme for nuclear waste management have underlined the need for a broad consultation process with public participation. Decision procedures that provide transparency for people outside the groups of experts and political decision-makers must be developed. This report explores what this transparency means and how it could be enhanced. It is acknowledged that the concept of transparency includes three equally important aspects: factual issues, normative issues, and stakeholder''s authenticity. So far experts have dominated the decision process in the nuclear waste area. Value judgements of experts may appear as normative issues, for instance among other scientists; or they may be related to issues of authenticity, for instance when discussions take place with community stakeholders. The formal decision process must always be the basis for building transparency. Two dominant approaches are compared: the Swedish ''review/decide'' approach, and the ''inquiry/decide'' approach used in the UK. Suggestions are made as to how the best features of the two approaches could be combined. The report also includes a study on the systemic roles of SKI/SSI in the Swedish nuclear waste management system. This study identifies several systemic functions carried out by SKI/SSI. Awareness of these roles within SKI and SSI (and among other stakeholders) is crucial for transparency. This report argues that a key element in building transparency is to create mechanisms for ''stretching'' SKB. Various channels for stretching and providing new perspectives are explored. Among the procedures discussed are those concerned with hearings and dialogue. Environmental Impact Assessment (EIA) is seen as the umbrella under which most of the stretching activities can take place. Team Syntegrity was used as a method to compare the Swedish and UK procedures. It is a non-hierarchical approach that enhances the effective contribution of a wide variety of

  4. Threadfin shad impacts phytoplankton and zooplankton community structures in channel catfish ponds

    Science.gov (United States)

    Plankton community structure and chlorophyll a concentration were compared in 12 0.1-ha earthen ponds co-stocked with channel catfish (Ictalurus punctatus Rafinesque, 1818) in multiple-batch culture (initial biomass = 5,458 kg ha-1) and a planktivore, threadfin shad (Dorosoma petenense Güther, 1867;...

  5. Dynamics of permanent structural transformations in ZBLAN induced by self-channeled plasma filament

    Science.gov (United States)

    Cho, Sung-Hak; Kumagai, Hiroshi; Midorikawa, Katsumi

    2004-06-01

    The time-resolved dynamics of permanent structural transformations in the ZBLAN (fluoride glass) induced by self-channeled plasma filament were first observed in situ using a high-intensity femtosecond (110 fs) Ti: sapphire laser ( λp=800 nm). Self-channeled plasma filament would be induced in ZBLAN glass at the irradiation higher than input intensity of 1.0 × 10 12 W/cm 2 and photoinduce either the refractive index modification or optical crack modification. At the domain of refractive index modification, the lifetime of induced self-channeled plasma filament was 30 ps and structural transition time for forming the refractive index change was 40 ps. At the domain of optical cracks, however, the lifetime of induced self-channeled plasma filament was 70 ps and structural transition time for forming the optical cracks was 70 ps. A maximum value of refractive index change (Δ n) was measured to be 1.3 × 10 -2. The intensity profile of the output beam transmitted through the refractive index modification showed that the bulk modification produced a permanent structure of optical waveguide.

  6. Structure of the channeling electrons wave functions under dynamical chaos conditions

    CERN Document Server

    Shul'ga, N F; Tarnovsky, A I; Isupov, A Yu

    2015-01-01

    The stationary wave functions of fast electrons axially channeling in the silicon crystal near [110] direction have been found numerically for integrable and non-integrable cases, for which the classical motion is regular and chaotic, respectively. The nodal structure of the wave functions in the quasi-classical region, where the energy levels density is high, is agreed with quantum chaos theory predictions.

  7. Thermal-structural response and low-cycle fatigue damage of channel wall nozzle

    Institute of Scientific and Technical Information of China (English)

    Cheng Cheng; Wang Yibai; Liu Yu; Liu Dawei; Lu Xingyu

    2013-01-01

    To investigate the thermo-mechanical response of channel wall nozzle under cyclic work-ing loads, the finite volume fluid-thermal coupling calculation method and the finite element thermal-structural coupling analysis technique are applied. In combination with the material low-cycle fatigue behavior, the modified continuous damage model on the basics of local strain approach is adopted to analyze the fatigue damage distribution and accumulation with increasing nozzle work cycles. Simulation results have shown that the variation of the non-uniform temperature distribution of channel wall nozzle during cyclic work plays a significant role in the thermal-structural response by altering the material properties;the thermal-mechanical loads interaction results in serious defor-mation mainly in the front region of slotted liner. In particular, the maximal cyclic strains appear in the intersecting regions of liner gas side wall and symmetric planes of channel and rib, where the fatigue failure takes place initially;with the increase in nozzle work cycles, the residual plastic strain accumulates linearly, and the strain amplitude and increment in each work cycle are separately equal, but the fatigue damage grows up nonlinearly. As a result, a simplified nonlinear damage accumulation approach has been suggested to estimate the fatigue service life of channel wall nozzle. The predicted node life is obviously conservative to the Miner’s life. In addition, several workable methods have also been proposed to improve the channel wall nozzle durability.

  8. Mechanistic signs of double-barreled structure in a fluoride ion channel

    Science.gov (United States)

    Last, Nicholas B; Kolmakova-Partensky, Ludmila; Shane, Tania; Miller, Christopher

    2016-01-01

    The Fluc family of F− ion channels protects prokaryotes and lower eukaryotes from the toxicity of environmental F−. In bacteria, these channels are built as dual-topology dimers whereby the two subunits assemble in antiparallel transmembrane orientation. Recent crystal structures suggested that Fluc channels contain two separate ion-conduction pathways, each with two F− binding sites, but no functional correlates of this unusual architecture have been reported. Experiments here fill this gap by examining the consequences of mutating two conserved F−-coordinating phenylalanine residues. Substitution of each phenylalanine specifically extinguishes its associated F− binding site in crystal structures and concomitantly inhibits F− permeation. Functional analysis of concatemeric channels, which permit mutagenic manipulation of individual pores, show that each pore can be separately inactivated without blocking F− conduction through its symmetry-related twin. The results strongly support dual-pathway architecture of Fluc channels. DOI: http://dx.doi.org/10.7554/eLife.18767.001 PMID:27449280

  9. Flow structures in submarine channels affected by Coriolis forces: Experimental observations

    Science.gov (United States)

    Cossu, R.; Wells, M. G.

    2011-12-01

    In this talk we will show how Coriolis forces can control the flow dynamics of turbidity currents flowing in sinuous channels at high latitudes. We describe how the internal velocity structure changes with latitude, based on observations from rotating laboratory experiments. When these results are combined with existing conceptual facies and depositional models we can now describe the changes in sedimentation patterns that are observed at different latitudes. The experiments were conducted in a sinuous channel model placed in a tank that was rotated at various rates (reflected by the Coriolis parameters f) ranging from f = 0 (at the equator) to ± 0.5 rad s-1 (at higher latitudes). The dependence of the density interface of gravity currents on rotation is shown in Figure 1a. At the equator the interface slopes up to the outer bend due to the centrifugal forces. In the Northern Hemisphere (NH) the tilt of the interface increases as now the Coriolis forces reinforce the centrifugal acceleration. In contrast, in the Southern Hemisphere (SH) the current ramps up to the inner bend and Coriolis forces dominate over centrifugal forces. Figure 1b shows the corresponding position of the downstream velocity core in the bend apex. At the equator the core is predominantly close to the centerline, whilst in the NH the core is deflected to the inner bend and in the SH the velocity core is shifted to the outer bank. Based upon our experimental results, we hypothesize that Coriolis forces can affect the velocity structure and sedimentation regime. Lateral accretion packages (LAPs) are built only on one side in the channel and finer sediments will be deposited mainly on the levee bank to which the high velocity core is deflected. The Rossby number RoW = U/fW (where U is the mean downstream velocity and W the channel width) can be used to determine the influence of Coriolis forces. In channel systems at high-latitudes (with RoW predict that channels exhibit a low sinuosity and have

  10. Structural Insights into Divalent Cation Modulations of ATP-Gated P2X Receptor Channels.

    Science.gov (United States)

    Kasuya, Go; Fujiwara, Yuichiro; Takemoto, Mizuki; Dohmae, Naoshi; Nakada-Nakura, Yoshiko; Ishitani, Ryuichiro; Hattori, Motoyuki; Nureki, Osamu

    2016-02-01

    P2X receptors are trimeric ATP-gated cation channels involved in physiological processes ranging widely from neurotransmission to pain and taste signal transduction. The modulation of the channel gating, including that by divalent cations, contributes to these diverse physiological functions of P2X receptors. Here, we report the crystal structure of an invertebrate P2X receptor from the Gulf Coast tick Amblyomma maculatum in the presence of ATP and Zn(2+) ion, together with electrophysiological and computational analyses. The structure revealed two distinct metal binding sites, M1 and M2, in the extracellular region. The M1 site, located at the trimer interface, is responsible for Zn(2+) potentiation by facilitating the structural change of the extracellular domain for pore opening. In contrast, the M2 site, coupled with the ATP binding site, might contribute to regulation by Mg(2+). Overall, our work provides structural insights into the divalent cation modulations of P2X receptors. PMID:26804916

  11. Geometrical structures and probable dissociation channels of CrPm+ (m=2, 4, 6, 8) clusters

    International Nuclear Information System (INIS)

    A density functional theory study on the geometrical structures and probable dissociation channels of CrPm+ (m=2, 4, 6, 8) clusters has been performed. Our results reveal that the tetrahedral P4 structure and linear P2 structure are two stable units in CrPm+ clusters relatively. The lowest energy structures of CrPm+ clusters are constructed by bonding Cr with P4 unit or P2 unit. The bond between Cr and P4 unit or P2 unit is much weaker than the bond between P atoms in P4 or P2 unit. The most probable dissociation channel for CrP8+ cluster is the detachment of P4 unit or P2 unit. Our conclusions are consistent with the previous laser photodissociation experiments.

  12. Novel vertical channel double gate structures for high density and low power flash memory applications

    Institute of Scientific and Technical Information of China (English)

    HUANG Ru; ZHOU FaLong; CAI YiMao; WU DaKe; ZHANG Xing

    2008-01-01

    The flash memory technology meets physical and technical obstacles in further caling. New structures and new materials are implemented as possible solutions. This paper focuses on two kinds of new flash cells for high density and low power memory applications based on the vertical channel double gate structure. The proposed VD-NROM with dual-nitride-trapping-layer and vertical structure can achieve four-bit-per-cell storage capability. And the proposed VSAS-FG cell bene-fits the high programming efficiency, low power and high density capability, which can be realized without any additional mask and can achieve the self-alignment of the split-gate channel and the floating-gate. The two novel flash cell structures can be considered as potential candidates for different flash memory applications.

  13. Building channels for transparent risk assessment. Final report RISCOM pilot project

    Energy Technology Data Exchange (ETDEWEB)

    Andersson, Kjell [Karinta-Konsult, Taeby (Sweden); Espejo, R. [Syncho Ltd, Birmingham (United Kingdom); Wene, C.O. [Profu AB, Lund (Sweden)

    1998-01-01

    Recent developments in the Swedish programme for nuclear waste management have underlined the need for a broad consultation process with public participation. Decision procedures that provide transparency for people outside the groups of experts and political decision-makers must be developed. This report explores what this transparency means and how it could be enhanced. It is acknowledged that the concept of transparency includes three equally important aspects: factual issues, normative issues, and stakeholder``s authenticity. So far experts have dominated the decision process in the nuclear waste area. Value judgements of experts may appear as normative issues, for instance among other scientists; or they may be related to issues of authenticity, for instance when discussions take place with community stakeholders. The formal decision process must always be the basis for building transparency. Two dominant approaches are compared: the Swedish ``review/decide`` approach, and the ``inquiry/decide`` approach used in the UK. Suggestions are made as to how the best features of the two approaches could be combined. The report also includes a study on the systemic roles of SKI/SSI in the Swedish nuclear waste management system. This study identifies several systemic functions carried out by SKI/SSI. Awareness of these roles within SKI and SSI (and among other stakeholders) is crucial for transparency. This report argues that a key element in building transparency is to create mechanisms for ``stretching`` SKB. Various channels for stretching and providing new perspectives are explored. Among the procedures discussed are those concerned with hearings and dialogue. Environmental Impact Assessment (EIA) is seen as the umbrella under which most of the stretching activities can take place. Team Syntegrity was used as a method to compare the Swedish and UK procedures. It is a non-hierarchical approach that enhances the effective contribution of a wide variety of

  14. Spatial Structure of the Branching Streamer Channels in a Corona Discharge

    International Nuclear Information System (INIS)

    The dendritic structure of streamer channels in a corona discharge is described by using fractal theory. It is found that, for a needle-plane discharge, the fractal dimension of the plasma structure is D = 2.16 ± 0.05. The computed spatial distributions of the branching ratios are compared with the available experimental data. The influence of the branching processes on the distribution of chemically active radicals in streamer corona discharges is studied

  15. On the relationship between multi-channel envelope and temporal fine structure

    DEFF Research Database (Denmark)

    Søndergaard, Peter Lempel; Decorsiere, Remi Julien Blaise; Dau, Torsten

    2011-01-01

    The envelope of a signal is broadly defined as the slow changes in time of the signal, where as the temporal fine structure (TFS) are the fast changes in time, i.e. the carrier wave(s) of the signal. The focus of this paper is on envelope and TFS in multi-channel systems. We discuss the difference...... providing an increasingly better approximation to the auditory system. A corollary from these results is that it is not possible to generate a test signal containing contradictory information in its multi-channel envelope and TFS....

  16. Calibration of structure in a distributed forecasting model for a semiarid flash flood: Dynamic surface storage and channel roughness

    Science.gov (United States)

    García-Pintado, Javier; Barberá, Gonzalo G.; Erena, Manuel; Castillo, Victor M.

    2009-10-01

    SummaryFlash floods pose a significant danger for life and property. Unfortunately, in arid and semiarid environment the runoff generation shows a complex non-linear behavior with a strong spatial and temporal non-uniformity. As a result, the predictions made by physically-based simulations in semiarid areas are subject to great uncertainty, and a failure in the predictive behavior of existing models is common. Thus better descriptions of physical processes at the watershed scale need to be incorporated into the hydrological model structures. For example, terrain relief has been systematically considered static in flood modelling at the watershed scale. Here, we show that the integrated effect of small distributed relief variations originated through concurrent hydrological processes within a storm event was significant on the watershed scale hydrograph. We model these observations by introducing dynamic formulations of two relief-related parameters at diverse scales: maximum depression storage, and roughness coefficient in channels. In the final ( a posteriori) model structure these parameters are allowed to be both time-constant or time-varying. The case under study is a convective storm in a semiarid Mediterranean watershed with ephemeral channels and high agricultural pressures (the Rambla del Albujón watershed; 556 km), which showed a complex multi-peak response. First, to obtain quasi-sensible simulations in the ( a priori) model with time-constant relief-related parameters, a spatially distributed parameterization was strictly required. Second, a generalized likelihood uncertainty estimation (GLUE) inference applied to the improved model structure, and conditioned to observed nested hydrographs, showed that accounting for dynamic relief-related parameters led to improved simulations. The discussion is finally broadened by considering the use of the calibrated model both to analyze the sensitivity of the watershed to storm motion and to attempt the flood

  17. Structure, inhibition and regulation of two-pore channel TPC1 from Arabidopsis thaliana.

    Science.gov (United States)

    Kintzer, Alexander F; Stroud, Robert M

    2016-03-10

    Two-pore channels (TPCs) comprise a subfamily (TPC1-3) of eukaryotic voltage- and ligand-gated cation channels with two non-equivalent tandem pore-forming subunits that dimerize to form quasi-tetramers. Found in vacuolar or endolysosomal membranes, they regulate the conductance of sodium and calcium ions, intravesicular pH, trafficking and excitability. TPCs are activated by a decrease in transmembrane potential and an increase in cytosolic calcium concentrations, are inhibited by low luminal pH and calcium, and are regulated by phosphorylation. Here we report the crystal structure of TPC1 from Arabidopsis thaliana at 2.87 Å resolution as a basis for understanding ion permeation, channel activation, the location of voltage-sensing domains and regulatory ion-binding sites. We determined sites of phosphorylation in the amino-terminal and carboxy-terminal domains that are positioned to allosterically modulate cytoplasmic Ca(2+) activation. One of the two voltage-sensing domains (VSD2) encodes voltage sensitivity and inhibition by luminal Ca(2+) and adopts a conformation distinct from the activated state observed in structures of other voltage-gated ion channels. The structure shows that potent pharmacophore trans-Ned-19 (ref. 17) acts allosterically by clamping the pore domains to VSD2. In animals, Ned-19 prevents infection by Ebola virus and other filoviruses, presumably by altering their fusion with the endolysosome and delivery of their contents into the cytoplasm. PMID:26961658

  18. Developing Some Structural Hydraulic Sensitivity Indicators and Utilizing Them in Flow Analysis of Irrigation Channels

    Directory of Open Access Journals (Sweden)

    S. Kouchakzadeh

    2006-10-01

    Full Text Available The sensitivity analysis approach should be regarded as a new means which has recently been proposed for assessing flow of the irrigation networks. This approach uses the flow steady state equations and the physical conditions of irrigation channels to evaluate the response of the system to input perturbations. In this paper, some structural hydraulic sensitivity indicators were developed and utilized in studying the flow of an irrigation channel. For evaluating the efficiency of indicators and proposed analysis method, a real case was simulated by SOBEK model. Using the simulation results and introduced indicators, the flow regulation and distribution process within channel was studied. The results indicated a successful application of sensitivity indicators in evaluating system's potential in relation to alternative operational scenarios. With the calculation of these indicators, a comprehensive information system could be provided and applied in the analysis of the response potential of channel to structural perturbations, estimation of structure setting accuracy, and in the choice of suitable operation frequency there of.

  19. Scour and deposition patterns in complex flow around stream restoration structures in a meandering stream channel

    Science.gov (United States)

    Kozarek, J. L.; Plott, J. R.; Diplas, P.; Sotiropoulos, F.; Lightbody, A.

    2010-12-01

    Instream structures are often employed in stream restoration projects to minimize erosion on the outside of a meander bend where shear stresses are highest, but guidelines for installation are often based on subjective criteria or professional experience. As part of a multiphase study to develop comprehensive quantitative design guidelines for instream structures, a series of experiments were conducted in the sand-bed meandering stream channel in the Outdoor StreamLab (OSL) at the St. Anthony Falls Laboratory (SAFL). Following an experiment with a single rock vane, three arrays of three evenly spaced structures (rock vanes, J-hooks, and bendway weirs) were installed in a single meander bend. To improve fundamental understanding of the interaction of the complex flow field around these structures with the sediment bed in a field-scale meandering stream, high resolution channel topography data were obtained for the entire meander bend at bankfull flow conditions (280 LPS) with and without structure arrays. Three-dimensional flow velocity and turbulence was measured using acoustic Doppler velocimetry for each scenario in nine cross sections located before, after, between, and over the structure installation locations. Velocity point spacing was decreased close to boundaries (bed, bank, or structure). The velocity data confirmed that the velocity core moved away from the outside of the meander bend in the presence of structures; however, increased local shear stresses around the structures increased scour which threatened structure stability. For each structure array, individual structures introduced different velocity patterns including visible recirculation zones and turbulent structures depending on the structure type and where in the meander bend the structure was placed. The results from these experiments will inform stream restoration structure design in a meandering stream.

  20. Tree-Structured Random Vector Quantization for Limited-Feedback Wireless Channel

    CERN Document Server

    Santipach, Wiroonsak

    2011-01-01

    We consider quantizing transmit beamforming vector in a multiantenna channel and signature vector in code division multiple access (CDMA). Assuming perfect channel knowledge, receiver selects for a transmitter the vector that maximizes the performance from a random vector quantization (RVQ) codebook, which consists of independent isotropically distributed unit-norm vectors. The quantized vector is then relayed to the transmitter via a rate-limited feedback channel. The RVQ codebook requires exhaustive search to locate the selected entry. To reduce the search complexity, we apply generalized Lloyd or $k$-dimensional (kd)-tree algorithms to organize RVQ entries into a tree. In examples shown, the search complexity of tree-structured (TS) RVQ can be a few orders of magnitude less than that of the unstructured RVQ for the same performance. We also derive the performance approximation for TS-RVQ in a large system limit, which predicts the performance of moderate-size systems very well.

  1. The B3 Subunit of the Cone Cyclic Nucleotide-gated Channel Regulates the Light Responses of Cones and Contributes to the Channel Structural Flexibility.

    Science.gov (United States)

    Ding, Xi-Qin; Thapa, Arjun; Ma, Hongwei; Xu, Jianhua; Elliott, Michael H; Rodgers, Karla K; Smith, Marci L; Wang, Jin-Shan; Pittler, Steven J; Kefalov, Vladimir J

    2016-04-15

    Cone photoreceptor cyclic nucleotide-gated (CNG) channels play a pivotal role in cone phototransduction, which is a process essential for daylight vision, color vision, and visual acuity. Mutations in the cone channel subunits CNGA3 and CNGB3 are associated with human cone diseases, including achromatopsia, cone dystrophies, and early onset macular degeneration. Mutations in CNGB3 alone account for 50% of reported cases of achromatopsia. This work investigated the role of CNGB3 in cone light response and cone channel structural stability. As cones comprise only 2-3% of the total photoreceptor population in the wild-type mouse retina, we used Cngb3(-/-)/Nrl(-/-) mice with CNGB3 deficiency on a cone-dominant background in our study. We found that, in the absence of CNGB3, CNGA3 was able to travel to the outer segments, co-localize with cone opsin, and form tetrameric complexes. Electroretinogram analyses revealed reduced cone light response amplitude/sensitivity and slower response recovery in Cngb3(-/-)/Nrl(-/-) mice compared with Nrl(-/-) mice. Absence of CNGB3 expression altered the adaptation capacity of cones and severely compromised function in bright light. Biochemical analysis demonstrated that CNGA3 channels lacking CNGB3 were more resilient to proteolysis than CNGA3/CNGB3 channels, suggesting a hindered structural flexibility. Thus, CNGB3 regulates cone light response kinetics and the channel structural flexibility. This work advances our understanding of the biochemical and functional role of CNGB3 in cone photoreceptors. PMID:26893377

  2. Polyester Modification of the Mammalian TRPM8 Channel Protein: Implications for Structure and Function

    Directory of Open Access Journals (Sweden)

    Chike Cao

    2013-07-01

    Full Text Available The TRPM8 ion channel is expressed in sensory neurons and is responsible for sensing environmental cues, such as cold temperatures and chemical compounds, including menthol and icilin. The channel functional activity is regulated by various physical and chemical factors and is likely to be preconditioned by its molecular composition. Our studies indicate that the TRPM8 channel forms a structural-functional complex with the polyester poly-(R-3-hydroxybutyrate (PHB. We identified by mass spectrometry a number of PHB-modified peptides in the N terminus of the TRPM8 protein and in its extracellular S3-S4 linker. Removal of PHB by enzymatic hydrolysis and site-directed mutagenesis of both the serine residues that serve as covalent anchors for PHB and adjacent hydrophobic residues that interact with the methyl groups of the polymer resulted in significant inhibition of TRPM8 channel activity. We conclude that the TRPM8 channel undergoes posttranslational modification by PHB and that this modification is required for its normal function.

  3. Simulation of planar channeling-radiation spectra of relativistic electrons and positrons channeled in a diamond-structure or tungsten single crystal (classical approach)

    Science.gov (United States)

    Azadegan, B.; Wagner, W.

    2015-01-01

    We present a Mathematica package for simulation of spectral-angular distributions and energy spectra of planar channeling radiation of relativistic electrons and positrons channeled along major crystallographic planes of a diamond-structure or tungsten single crystal. The program is based on the classical theory of channeling radiation which has been successfully applied to study planar channeling of light charged particles at energies higher than 100 MeV. Continuous potentials for different planes of diamond, Si, Ge and W single crystals are calculated using the Doyle-Turner approximation to the atomic scattering factor and taking thermal vibrations of the crystal atoms into account. Numerical methods are applied to solve the classical one-dimensional equation of motion. The code is designed to calculate the trajectories, velocities and accelerations of electrons (positrons) channeled by the planar continuous potential. In the framework of classical electrodynamics, these data allow realistic simulations of spectral-angular distributions and energy spectra of planar channeling radiation. Since the generated output is quantitative, the results of calculation may be useful, e.g., for setup configuration and crystal alignment in channeling experiments, for the study of the dependence of channeling radiation on the input parameters of particle beams with respect to the crystal orientation, but also for the simulation of positron production by means of pair creation what is mandatory for the design of efficient positron sources necessary in high-energy and collider physics. Although the classical theory of channeling is well established for long time, there is no adequate library program for simulation of channeling radiation up to now, which is commonly available, sufficiently simple and effective to employ and, therefore, of benefit as for special investigations as for a quick overview of basic features of this type of radiation.

  4. Observations of the Behavior and Distribution of Fish in Relation to the Columbia River Navigation Channel and Channel Maintenance Activities; FINAL

    International Nuclear Information System (INIS)

    This report is a compilation of 7 studies conducted for the U.S. Army Corps of Engineers between 1995 and 1998 which used hydroacoustic methods to study the behavior of migrating salmon in response to navigation channel maintenance activities in the lower Columbia River near river mile 45. Differences between daytime and nighttime behavior and fish densities were noted. Comparisons were made of fish distribution across the river (in the channel, channel margin or near shore) and fish depth upstream and downstream of dikes, dredges, and pile driving areas

  5. Molecular modeling and structural analysis of two-pore domain potassium channels TASK1 interactions with the blocker A1899

    Directory of Open Access Journals (Sweden)

    David Mauricio Ramirez

    2015-03-01

    Full Text Available A1899 is a potent and highly selective blocker of the Two-pore domain potassium (K2P channel TASK-1, it acts as an antagonist blocking the K+ flux and binds to TASK-1 in the inner cavity and shows an activity in nanomolar order. This drug travels through the central cavity and finally binds in the bottom of the selectivity filter with some threonines and waters molecules forming a H-bond network and several hydrophobic interactions. Using alanine mutagenesis screens the binding site was identify involving residues in the P1 and P2 pore loops, the M2 and M4 transmembrane segments, and the halothane response element; mutations were introduced in the human TASK-1 (KCNK3, NM_002246 expressed in Oocytes from anesthetized Xenopus laevis frogs. Based in molecular modeling and structural analysis as such as molecular docking and binding free energy calculations a pose was suggested using a TASK-1 homology models. Recently, various K2P crystal structures have been obtained. We want redefined – from a structural point of view – the binding mode of A1899 in TASK-1 homology models using as a template the K2P crystal structures. By computational structural analysis we describe the molecular basis of the A1899 binding mode, how A1899 travel to its binding site and suggest an interacting pose (Figure 1. after 100 ns of molecular dynamics simulation (MDs we found an intra H-Bond (80% of the total MDs, a H-Bond whit Thr93 (42% of the total MDs, a pi-pi stacking interaction between a ring and Phe125 (88% of the total MDs and several water bridges. Our experimental and computational results allow the molecular understanding of the structural binding mechanism of the selective blocker A1899 to TASK-1 channels. We identified the structural common and divergent features of TASK-1 channel through our theoretical and experimental studies of A1899 drug action.

  6. Structural and functional characterization of the purified cardiac ryanodine receptor-Ca2+ release channel complex.

    Science.gov (United States)

    Anderson, K; Lai, F A; Liu, Q Y; Rousseau, E; Erickson, H P; Meissner, G

    1989-01-15

    Using density gradient centrifugation and [3H]ryanodine as a specific marker, the ryanodine receptor-Ca2+ release channel complex from Chaps-solubilized canine cardiac sarcoplasmic reticulum (SR) has been purified in the form of an approximately 30 S complex, comprised of Mr approximately 400,000 polypeptides. Purification resulted in a specific activity of approximately 450 pmol bound ryanodine/mg of protein, a 60-70% recovery of ryanodine binding activity, and retention of the high affinity ryanodine binding site (KD = 3 nM). Negative stain electron microscopy revealed a 4-fold symmetric, four-leaf clover structure, which could fill a box approximately 30 x 30 nm and was thus morphologically similar to the SR-transverse-tubule, junctionally associated foot structure. The structural, sedimentation, and ryanodine binding data strongly suggest there is one high affinity ryanodine binding site/30 S complex, comprised of four Mr approximately 400,000 subunits. Upon reconstitution into planar lipid bilayers, the purified complex exhibited a Ca2+ conductance (70 pS in 50 mM Ca2+) similar to that of the native cardiac Ca2+ release channel (75 pS). The reconstituted complex was also found to conduct Na+ (550 pS in 500 mM Na+) and often to display complex Na+ subconducting states. The purified channel could be activated by micromolar Ca2+ or millimolar ATP, inhibited by millimolar Mg2+ or micromolar ruthenium red, and modified to a long-lived open subconducting state by ryanodine. The sedimentation, subunit composition, morphological, and ryanodine binding characteristics of the purified cardiac ryanodine receptor-Ca2+ release channel complex were similar to those previously described for the purified ryanodine receptor-Ca2+ release channel complex from fast-twitch skeletal muscle. PMID:2463249

  7. Antenna Array Structures Effect on Water-Filling Capacity of Indoor NLOS MIMO Channel

    Institute of Scientific and Technical Information of China (English)

    L(U) Jian-gang; L(U) Ying-hua; DU Juan; LI Yun-zhuang; WANG Xu-ying

    2005-01-01

    A 2-D Shooting and Bouncing Ray-tracing method (SBR) is used to analyze the different antenna array structure effect on the water-filling Capacity Complementary Cumulative Distribution Functions (CCDFS) of indoor Non-Line-of-Sight (NLOS) Multiple-Input Multiple-Output (MIMO) channel. The results have shown that in NLOS indoor environment different antenna array structures affect on the CCDFS differently. The CCDFS of MIMO systems with antenna spacing 5λ change slightly with antenna array structures and all approach the in independent and identically distribution (i.i.d.) rayleigh channel water-filling capacity. When antenna spacing decreased to 0.5λ, the capacities of MIMO systems drop also, and change with antenna array structures greatly. The results on outage water-filling capacity also show that there exist a fixed relationship that i.i.d. rayleigh channel capacity is larger than the capacity equipped with linear antenna array which is larger than the capacity equipped with rectangular antenna array and the capacity equipped with circular antenna array.

  8. Molecular modeling of the ion channel-like nanotube structure of amyloid β-peptide

    Institute of Scientific and Technical Information of China (English)

    JIAO Yong; YANG Pin

    2007-01-01

    The ion channel-like nanotube structure of the oligomers of amyloid β-peptide (Aβ) was first investigated by molecular modeling. The results reveal that the hydrogen bond net is one of the key factors to stabilize the structure. The hydrophobicity distribution mode of the side chains is in favor of the structure inserting into the bilayers and forming a hydrophilic pore. The lumen space is under the control of the negative potential, weaker but spreading continuously, to which the cation selectivity attributes; meanwhile, the alternate distribution of the stronger positive and negative potentials makes the electrostatic distribution of the structure framework balance, which is also one of the key factors stabilizing the structure. The results lay the theoretical foundation for illuminating the structure stability and the ion permeability, and give a clue to elucidating the molecular mechanism of Alzheimer's disease (AD) and designing novel drugs to prevent or reverse AD at the root.

  9. Structural insights into Ca(2+)-activated long-range allosteric channel gating of RyR1.

    Science.gov (United States)

    Wei, Risheng; Wang, Xue; Zhang, Yan; Mukherjee, Saptarshi; Zhang, Lei; Chen, Qiang; Huang, Xinrui; Jing, Shan; Liu, Congcong; Li, Shuang; Wang, Guangyu; Xu, Yaofang; Zhu, Sujie; Williams, Alan J; Sun, Fei; Yin, Chang-Cheng

    2016-09-01

    Ryanodine receptors (RyRs) are a class of giant ion channels with molecular mass over 2.2 mega-Daltons. These channels mediate calcium signaling in a variety of cells. Since more than 80% of the RyR protein is folded into the cytoplasmic assembly and the remaining residues form the transmembrane domain, it has been hypothesized that the activation and regulation of RyR channels occur through an as yet uncharacterized long-range allosteric mechanism. Here we report the characterization of a Ca(2+)-activated open-state RyR1 structure by cryo-electron microscopy. The structure has an overall resolution of 4.9 Å and a resolution of 4.2 Å for the core region. In comparison with the previously determined apo/closed-state structure, we observed long-range allosteric gating of the channel upon Ca(2+) activation. In-depth structural analyses elucidated a novel channel-gating mechanism and a novel ion selectivity mechanism of RyR1. Our work not only provides structural insights into the molecular mechanisms of channel gating and regulation of RyRs, but also sheds light on structural basis for channel-gating and ion selectivity mechanisms for the six-transmembrane-helix cation channel family. PMID:27573175

  10. Adaptive processing of thin structures to augment segmentation of dual-channel structural MRI of the human brain

    OpenAIRE

    Withers, James

    2010-01-01

    This thesis presents a method for the segmentation of dual-channel structural magnetic resonance imaging (MRI) volumes of the human brain into four tissue classes. The state-of-the-art FSL FAST segmentation software (Zhang et al., 2001) is in widespread clinical use, and so it is considered a benchmark. A significant proportion of FAST’s errors has been shown to be localised to cortical sulci and blood vessels; this issue has driven the developments in this thesis, rather than ...

  11. Uranium(VI) coordination polymers with pyromellitate ligand: Unique 1D channel structures and diverse fluorescence

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Yingjie, E-mail: yzx@ansto.gov.au [Australian Nuclear Science and Technology Organization, Locked Bag 2001, Kirrawee DC, NSW 2232 (Australia); Bhadbhade, Mohan [Mark Wainwright Analytical Centre, University of New South Wales, Kensington, NSW 2052 (Australia); Karatchevtseva, Inna [Australian Nuclear Science and Technology Organization, Locked Bag 2001, Kirrawee DC, NSW 2232 (Australia); Price, Jason R. [Australian Synchrotron, 800 Blackburn Road, Clayton, VIC 3168 (Australia); Liu, Hao [Centre for Clean Energy Technology, School of Chemistry and Forensic Science, University of Technology Sydney, PO Box 123, Broadway, Sydney, NSW 2007 (Australia); Zhang, Zhaoming; Kong, Linggen [Australian Nuclear Science and Technology Organization, Locked Bag 2001, Kirrawee DC, NSW 2232 (Australia); Čejka, Jiří [Department of Mineralogy, National Museum, Václavské náměstí, 68, Prague 1, 115 79-CZ (Czech Republic); Lu, Kim; Lumpkin, Gregory R. [Australian Nuclear Science and Technology Organization, Locked Bag 2001, Kirrawee DC, NSW 2232 (Australia)

    2015-03-15

    Three new coordination polymers of uranium(VI) with pyromellitic acid (H{sub 4}btca) have been synthesized and structurally characterized. (ED)[(UO{sub 2})(btca)]·(DMSO)·3H{sub 2}O (1) (ED=ethylenediammonium; DMSO=dimethylsulfoxide) has a lamellar structure with intercalation of ED and DMSO. (NH{sub 4}){sub 2}[(UO{sub 2}){sub 6}O{sub 2}(OH){sub 6}(btca)]·~6H{sub 2}O (2) has a 3D framework built from 7-fold coordinated uranyl trinuclear units and btca ligands with 1D diamond-shaped channels (~8.5 Å×~8.6 Å). [(UO{sub 2}){sub 2}(H{sub 2}O)(btca)]·4H{sub 2}O (3) has a 3D network constructed by two types of 7-fold coordinated uranium polyhedron. The unique μ{sub 5}-coordination mode of btca in 3 enables the formation of 1D olive-shaped large channels (~4.5 Å×~19 Å). Vibrational modes, thermal stabilities and fluorescence properties have been investigated. - Graphical abstract: Table of content: three new uranium(VI) coordination polymers with pyromellitic acid (H{sub 4}btca) have been synthesized via room temperature and hydrothermal synthesis methods, and structurally characterized. Two to three dimensional (3D) frameworks are revealed. All 3D frameworks have unique 1D large channels. Their vibrational modes, thermal stabilities and photoluminescence properties have been investigated. - Highlights: • Three new coordination polymers of U(VI) with pyromellitic acid (H{sub 4}btca). • Structures from a 2D layer to 3D frameworks with unique 1D channels. • Unusual µ{sub 5}-(η{sub 1}:η{sub 2}:η{sub 1}:η{sub 2:}η{sub 1}) coordination mode of btca ligand. • Vibrational modes, thermal stabilities and luminescent properties reported.

  12. Turbulent flow in a ribbed channel: Flow structures in the vicinity of a rib

    DEFF Research Database (Denmark)

    Wang, Lei; Salewski, Mirko; Sundén, Bengt

    2010-01-01

    PIV measurements are performed in a channel with periodic ribs on one wall. The emphasis of this study is to investigate the flow structures in the vicinity of a rib in terms of mean velocities, Reynolds stresses, probability density functions (PDF), and two-point correlations. The PDF distribution......-based visualization is applied to the separation bubble upstream of the rib. Salient critical points and limit cycles are extracted, which gives clues to the physical processes occurring in the flow....

  13. Mechanical coupling of the multiple structural elements of the large-conductance mechanosensitive channel during expansion.

    Science.gov (United States)

    Li, Jie; Guo, Jianli; Ou, Xiaomin; Zhang, Mingfeng; Li, Yuezhou; Liu, Zhenfeng

    2015-08-25

    The prokaryotic mechanosensitive channel of large conductance (MscL) is a pressure-relief valve protecting the cell from lysing during acute osmotic downshock. When the membrane is stretched, MscL responds to the increase of membrane tension and opens a nonselective pore to about 30 Å wide, exhibiting a large unitary conductance of ∼ 3 nS. A fundamental step toward understanding the gating mechanism of MscL is to decipher the molecular details of the conformational changes accompanying channel opening. By applying fusion-protein strategy and controlling detergent composition, we have solved the structures of an archaeal MscL homolog from Methanosarcina acetivorans trapped in the closed and expanded intermediate states. The comparative analysis of these two new structures reveals significant conformational rearrangements in the different domains of MscL. The large changes observed in the tilt angles of the two transmembrane helices (TM1 and TM2) fit well with the helix-pivoting model derived from the earlier geometric analyses based on the previous structures. Meanwhile, the periplasmic loop region transforms from a folded structure, containing an ω-shaped loop and a short β-hairpin, to an extended and partly disordered conformation during channel expansion. Moreover, a significant rotating and sliding of the N-terminal helix (N-helix) is coupled to the tilting movements of TM1 and TM2. The dynamic relationships between the N-helix and TM1/TM2 suggest that the N-helix serves as a membrane-anchored stopper that limits the tilts of TM1 and TM2 in the gating process. These results provide direct mechanistic insights into the highly coordinated movement of the different domains of the MscL channel when it expands. PMID:26261325

  14. Design Methodology of the Structure of Postal Express Mail Networks of Aviation Channels in China

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    On the basis of the postal area center office system, the continuous space approximation is used to study the structure of postal express mail networks of aviation channels in China. Tradeoffs among sorting, handling, transportation, administrative and facilities costs are examined. The optimizing design methodology proposed in this paper can be used to analyze and design the postal express mail network. The objective is to minimize the total system cost.

  15. Uranium(VI) coordination polymers with pyromellitate ligand: Unique 1D channel structures and diverse fluorescence

    International Nuclear Information System (INIS)

    Three new coordination polymers of uranium(VI) with pyromellitic acid (H4btca) have been synthesized and structurally characterized. (ED)[(UO2)(btca)]·(DMSO)·3H2O (1) (ED=ethylenediammonium; DMSO=dimethylsulfoxide) has a lamellar structure with intercalation of ED and DMSO. (NH4)2[(UO2)6O2(OH)6(btca)]·~6H2O (2) has a 3D framework built from 7-fold coordinated uranyl trinuclear units and btca ligands with 1D diamond-shaped channels (~8.5 Å×~8.6 Å). [(UO2)2(H2O)(btca)]·4H2O (3) has a 3D network constructed by two types of 7-fold coordinated uranium polyhedron. The unique μ5-coordination mode of btca in 3 enables the formation of 1D olive-shaped large channels (~4.5 Å×~19 Å). Vibrational modes, thermal stabilities and fluorescence properties have been investigated. - Graphical abstract: Table of content: three new uranium(VI) coordination polymers with pyromellitic acid (H4btca) have been synthesized via room temperature and hydrothermal synthesis methods, and structurally characterized. Two to three dimensional (3D) frameworks are revealed. All 3D frameworks have unique 1D large channels. Their vibrational modes, thermal stabilities and photoluminescence properties have been investigated. - Highlights: • Three new coordination polymers of U(VI) with pyromellitic acid (H4btca). • Structures from a 2D layer to 3D frameworks with unique 1D channels. • Unusual µ5-(η1:η2:η1:η2:η1) coordination mode of btca ligand. • Vibrational modes, thermal stabilities and luminescent properties reported

  16. Tree-Structure Expectation Propagation for LDPC Decoding in Erasure Channels

    OpenAIRE

    Olmos, Pablo M.; Murillo-Fuentes, Juan José; Pérez-Cruz, Fernando

    2010-01-01

    In this paper we present a new algorithm, denoted as TEP, to decode low-density parity-check (LDPC) codes over the Binary Erasure Channel (BEC). The TEP decoder is derived applying the expectation propagation (EP) algorithm with a tree- structured approximation. Expectation Propagation (EP) is a generalization to Belief Propagation (BP) in two ways. First, it can be used with any exponential family distribution over the cliques in the graph. Second, it can impose additional constraints on the...

  17. Structural Basis for the Function and Inhibition of an Influenze Virus Proton Channel

    Energy Technology Data Exchange (ETDEWEB)

    Stouffer,A.; Acharya, R.; Salom, D.; Levine, A.; Di Costanzo, L.; Soto, C.; Tershko, V.; Nanda, V.; Stayrook, S.; DeGrado, W.

    2008-01-01

    The M2 protein from influenza A virus is a pH-activated proton channel that mediates acidification of the interior of viral particles entrapped in endosomes. M2 is the target of the anti-influenza drugs amantadine and rimantadine; recently, resistance to these drugs in humans, birds and pigs has reached more than 90% (ref. 1). Here we describe the crystal structure of the transmembrane-spanning region of the homotetrameric protein in the presence and absence of the channel-blocking drug amantadine. pH-dependent structural changes occur near a set of conserved His and Trp residues that are involved in proton gating2. The drug-binding site is lined by residues that are mutated in amantadine-resistant viruses3, 4. Binding of amantadine physically occludes the pore, and might also perturb the pKa of the critical His residue. The structure provides a starting point for solving the problem of resistance to M2-channel blockers.

  18. Turbulent structures and statistics in turbulent channel flow with two-dimensional slits

    International Nuclear Information System (INIS)

    Direct numerical simulation (DNS, hereafter) of turbulent channel flow with periodic two-dimensional slits has been performed in order to investigate the turbulent statistics and the turbulent structures behind the slits. The Reynolds numbers based on the friction velocity and the channel half width are 10-1500. In the wake region, the mean flow becomes asymmetric with respect to the centerline of the geometry through the Coanda effect. Large-scale vortices are generated at the height of the slit edges. These vortices become deformed in various scenarios and break up into disordered small-scale structures in the shear layers behind the slit. The small-scale vortices are convected toward the channel center. The budgets of the Reynolds stresses have been computed. The significant differences are found between the budgets in this study and those in a backward-facing step turbulence. The positive Reynolds shear stress u'v'-bar is observed owing to the flow contraction just behind the slit. The wake region was classified into several categories based upon the budgets of the Reynolds stresses and turbulent structures

  19. Turbulent structures and statistics in turbulent channel flow with two-dimensional slits

    Energy Technology Data Exchange (ETDEWEB)

    Makino, Soichiro [Department of Mechanical Engineering, Tokyo University of Science, Noda-shi, Chiba 278-8510 (Japan)], E-mail: a7502126@rs.noda.tus.ac.jp; Iwamoto, Kaoru; Kawamura, Hiroshi [Department of Mechanical Engineering, Tokyo University of Science, Noda-shi, Chiba 278-8510 (Japan)

    2008-06-15

    Direct numerical simulation (DNS, hereafter) of turbulent channel flow with periodic two-dimensional slits has been performed in order to investigate the turbulent statistics and the turbulent structures behind the slits. The Reynolds numbers based on the friction velocity and the channel half width are 10-1500. In the wake region, the mean flow becomes asymmetric with respect to the centerline of the geometry through the Coanda effect. Large-scale vortices are generated at the height of the slit edges. These vortices become deformed in various scenarios and break up into disordered small-scale structures in the shear layers behind the slit. The small-scale vortices are convected toward the channel center. The budgets of the Reynolds stresses have been computed. The significant differences are found between the budgets in this study and those in a backward-facing step turbulence. The positive Reynolds shear stress u'v'-bar is observed owing to the flow contraction just behind the slit. The wake region was classified into several categories based upon the budgets of the Reynolds stresses and turbulent structures.

  20. Structural plasticity and dynamic selectivity of acid-sensing ion channel-spider toxin complexes

    Energy Technology Data Exchange (ETDEWEB)

    Baconguis, Isabelle; Gouaux, Eric [Oregon HSU

    2012-07-29

    Acid-sensing ion channels (ASICs) are voltage-independent, amiloride-sensitive channels involved in diverse physiological processes ranging from nociception to taste. Despite the importance of ASICs in physiology, we know little about the mechanism of channel activation. Here we show that psalmotoxin activates non-selective and Na+-selective currents in chicken ASIC1a at pH7.25 and 5.5, respectively. Crystal structures of ASIC1a–psalmotoxin complexes map the toxin binding site to the extracellular domain and show how toxin binding triggers an expansion of the extracellular vestibule and stabilization of the open channel pore. At pH7.25 the pore is approximately 10Å in diameter, whereas at pH5.5 the pore is largely hydrophobic and elliptical in cross-section with dimensions of approximately 5 by 7Å, consistent with a barrier mechanism for ion selectivity. These studies define mechanisms for activation of ASICs, illuminate the basis for dynamic ion selectivity and provide the blueprints for new therapeutic agents.

  1. Biomimetic heterogeneous multiple ion channels: a honeycomb structure composite film generated by breath figures

    Science.gov (United States)

    Han, Keyu; Heng, Liping; Wen, Liping; Jiang, Lei

    2016-06-01

    We design a novel type of artificial multiple nanochannel system with remarkable ion rectification behavior via a facile breath figure (BF) method. Notably, even though the charge polarity in the channel wall reverses under different pH values, this nanofluidic device displays the same ionic rectification direction. Compared with traditional nanochannels, this composite multiple ion channel device can be more easily obtained and has directional ionic rectification advantages, which can be applied in many fields.We design a novel type of artificial multiple nanochannel system with remarkable ion rectification behavior via a facile breath figure (BF) method. Notably, even though the charge polarity in the channel wall reverses under different pH values, this nanofluidic device displays the same ionic rectification direction. Compared with traditional nanochannels, this composite multiple ion channel device can be more easily obtained and has directional ionic rectification advantages, which can be applied in many fields. Electronic supplementary information (ESI) available: Pore size distribution histograms of the AAO substrates; SEM images of the side view of pure AAO membranes and top view of the flat PI/AAO composite film; the current-time curves of the flat composite film; the current-voltage characteristics curves of pure AAO nanochannels with different mean pore diameters; CA of the two surfaces of the composite PI/AAO film, the structural formula of the polymer polyimide resin (PI), and solid surface zeta potential. See DOI: 10.1039/c6nr02506d

  2. Development of an Integrated Multi-channel Ultrasonic System for Online Structural Health Monitoring of Large Structures

    International Nuclear Information System (INIS)

    Structural health monitoring (SHM) has becoming one of important issues in the maintenance of various structures such as large steel plates, vessels, and pipes in nuclear power plants. Especially, ultrasonic guided waves have been proposed by many researchers for promising SHM applications because they have ability to travel long distances in the target structures. However, the interpretation of guided wave signals obtained from complex geometrical structures is very difficult. Recently, to address such difficulty, computed tomography (CT) and array methods have been proposed for generating two dimensional images of plate-like structures using spatially distributed ultrasonic transducers. We developed an integrated multi-channel ultrasonic system that can handle array transducers and carried out experiments by using the developed system to construct CT images of a defect in a specimen

  3. Strongly Modulated Friction of a Film-Terminated Ridge-Channel Structure

    Science.gov (United States)

    He, Zhenping; Hui, Chung-Yuen; Levrard, Benjamin; Bai, Ying; Jagota, Anand

    2016-05-01

    Natural contacting surfaces have remarkable surface mechanical properties, which has led to the development of bioinspired surface structures using rubbery materials with strongly enhanced adhesion and static friction. However, sliding friction of structured rubbery surfaces is almost always significantly lower than that of a flat control, often due to significant loss of contact. Here we show that a film-terminated ridge-channel structure can strongly enhance sliding friction. We show that with properly chosen materials and geometrical parameters the near surface structure undergoes mechanical instabilities along with complex folding and sliding of internal interfaces, which is responsible for the enhancement of sliding friction. Because this structure shows no enhancement of adhesion under normal indentation by a sphere, it breaks the connection between energy loss during normal and shear loading. This makes it potentially interesting in many applications, for instance in tires, where one wishes to minimize rolling resistance (normal loading) while maximizing sliding friction (shear loading).

  4. Variable structure control for MRAC systems with perturbations in input and output channels

    Institute of Scientific and Technical Information of China (English)

    武玉强[1; 余星火[2; 冯纯伯[3

    2000-01-01

    A design scheme of variable structure model reference control systems using only input and output measurements is presented for the systems with unmodeled dynamics and disturbances in input and output channels. The modeled part of the systems has relative degree greater than one and unknown upper bound of degree. By introducing some auxiliary signals and normalized signals with memory functions and appropriate choice of controller parameters, the developed variable structure controller guarantees the global stability of the closed-loop system and the arbitrarily small tracking error.

  5. A proton wire and water channel revealed in the crystal structure of isatin hydrolase

    DEFF Research Database (Denmark)

    Bjerregaard-Andersen, Kaare; Sommer, Theis; Jensen, Jan Kristian;

    2014-01-01

    The high resolution crystal structures of isatin hydrolase from Labrenzia aggregata in the apo and the product state, are described. These are the first structures of a functionally characterized metal-dependent hydrolase of this fold. Isatin hydrolase converts isatin to isatinate and belongs to a...... novel family of metalloenzymes that include the bacterial kynurenine formamidase. The product state, mimicked by bound thioisatinate, reveals a water molecule that bridges the thioisatinate to a proton wire in an adjacent water channel and thus allows the proton released by the reaction to escape only...

  6. Structural implications of mutations in the pea SYM8 symbiosis gene, the DMI1 ortholog, encoding a predicted ion channel

    DEFF Research Database (Denmark)

    Edwards, Anne; Heckmann, Anne Birgitte Lau; Yousafzai, Faridoon;

    2007-01-01

    ortholog can complement a M. truncatula dmil mutant for nodulation. Each of the five pea sym8 mutants carries a mutation in the DMI1 ortholog, confirming that the pea SYM8 is the DMI1 ortholog. Based on predicted structural similarities with an archaebacterial ion channel, we propose that SYM8 forms a...... tetrameric calcium-gated channel of a predicted structure similar to the archaebacterial potassium channel but containing a filter region that is different. The predicted structure identifies four aspartate residues (one from each subunit) forming the channel opening. We made a mutation changing the...... link the predicted channel and the gating ring domains, indicating that this mutation may block function by preventing a protein conformational change being transmitted from the gating-ring domain to the pore domain....

  7. Fish assemblages at engineered and natural channel structures in the lower Missouri river: implications for modified dike structures

    Science.gov (United States)

    Schloesser, J.T.; Paukert, Craig P.; Doyle, W.J.; Hill, T.; Steffensen, K.D.; Travnichek, Vincent H.

    2012-01-01

    Large rivers throughout the world have been modified by using dike structures to divert water flows to deepwater habitats to maintain navigation channels. These modifications have been implicated in the decline in habitat diversity and native fishes. However, dike structures have been modified in the Missouri River USA to increase habitat diversity to aid in the recovery of native fishes. We compared species occupancy and fish community composition at natural sandbars and at notched and un-notched rock dikes along the lower Missouri River to determine if notching dikes increases species diversity or occupancy of native fishes. Fish were collected using gill nets, trammel nets, otter trawls, and mini fyke nets throughout the lower 1212 river km of the Missouri River USA from 2003 to 2006. Few differences in species richness and diversity were evident among engineered dike structures and natural sandbars. Notching a dike structure had no effect on proportional abundance of fluvial dependents, fluvial specialists, and macrohabitat generalists. Occupancy at notched dikes increased for two species but did not differ for 17 other species (81%). Our results suggest that dike structures may provide suitable habitats for fluvial species compared with channel sand bars, but dike notching did not increase abundance or occupancy of most Missouri River fishes. Published in 2011 by John Wiley & Sons, Ltd.

  8. Streambed and water profile response to in-channel restoration structures in a laboratory meandering stream

    Science.gov (United States)

    Han, Bangshuai; Chu, Hong-Hanh; Endreny, Theodore A.

    2015-11-01

    In-channel structures are often installed in alluvial rivers during restoration to steer currents, but they also modify the streambed morphology and water surface profile, and alter hydraulic gradients driving ecologically important hyporheic exchange. Although river features before and after restoration need to be compared, few studies have collected detailed observations to facilitate this comparison. We created a laboratory mobile-bed alluvial meandering river and collected detailed measurements in the highly sinuous meander before and after installation of in-channel structures, which included one cross vane and six J-hooks situated along 1 bar unit. Measurements of streambed and water surface elevation with submillimeter vertical accuracy and horizontal resolution were obtained using close-range photogrammetry. Compared to the smooth gradually varied water surface profile for control runs without structures, the structures created rapidly varied flow with subcritical to supercritical flow transitions, as well as backwater and forced-morphology pools, which increased volumetric storage by 74% in the entire stream reach. The J-hooks, located along the outer bank of the meander bend and downstream of the cross vane, created stepwise patterns in the streambed and water surface longitudinal profiles. The pooling of water behind the cross vane increased the hydraulic gradient across the meander neck by 1% and increased local groundwater gradients by 4%, with smaller increases across other transects through the intrameander zone. Scour pools developed downstream of the cross vane and around the J-hooks situated near the meander apex. In-channel structures significantly changed meander bend hydraulic gradients, and the detailed streambed and water surface 3-D maps provide valuable data for computational modeling of changes to hyporheic exchange.

  9. Channel Structures Formed in Copper Ingots upon Melting and Evaporation by a High-Power Electron Beam

    Directory of Open Access Journals (Sweden)

    Sergey Bardakhanov

    2015-03-01

    Full Text Available A new phenomenon is described in this paper: the formation of macroscopic channel structures on the bottom of copper ingots which were used as the target for the synthesis of copper nanoparticles by high-power electron beam evaporation and condensation. In the synthesis experiment, the cylindrical copper ingot is melted and partially evaporated in a graphite crucible. The channel structures were originally observed after a series of nanoparticle synthesis experiments in varying conditions. In the present work, various process conditions are varied in order to recreate the structures and identify their mechanism of formation. Conditions in which the channel structures form and do not form are identified and interesting microstructures are observed near the channel structures.

  10. Bad Apples, Bad Barrels, and the Structure of Marketing Channel Relationships: Analyses of the Propensity for Opportunism and Opportunistic Behaviors

    OpenAIRE

    Ishida, Chiharu

    2007-01-01

    The theoretical frameworks of transaction cost economics and agency theory are widely used to design appropriate governance structure for constraining opportunism within marketing channels. These approaches generally assume that marketing channel managers are opportunistic, and only economic constraints deter opportunism in exchange relationships. However, some empirical studies have shown that managers do not always behave opportunistically even if conditions permit such behavior. In additio...

  11. Calcium channel activity of purified human synexin and structure of the human synexin gene

    International Nuclear Information System (INIS)

    Synexin is a calcium-dependent membrane binding protein that not only fuses membranes but also acts as a voltage-dependent calcium channel. The authors have isolated and sequenced a set of overlapping cDNA clones for human synexin. The derived amino acid sequence of synexin reveals strong homology in the C-terminal domain with a previously identified class of calcium-dependent membrane binding proteins. These include endonexin II, lipocortin I, calpactin I heavy chain (p36), protein II, and calelectrin 67K. The Mr 51,000 synexin molecule can be divided into a unique, highly hydrophobic N-terminal domain of 167 amino acids and a conserved C-terminal region of 299 amino acids. The latter domain is composed of alternating hydrophobic and hydrophilic segments. Analysis of the entire structure reveals possible insights into such diverse properties as voltage-sensitive calcium channel activity, ion selectivity, affinity for phospholipids, and membrane fusion

  12. A high speed direct digital frequency synthesizer based on multi-channel structure

    Science.gov (United States)

    Ling, Yuan; Qiang, Zhang; Yin, Shi

    2015-06-01

    This paper presents a direct digital frequency synthesizer (DDFS) for high speed application based on multi-channel structure. This DDFS has phase resolution of 32 bits and magnitude resolution of 12 bits. In order to ensure the high speed and high resolution at the same time, the multi-channel sampling technique is used and a 12 bits linear digital-to-analog converter is implemented. The chip is fabricated in TSMC 130 nm CMOS technology with active area of 0.89 × 0.98 mm2 and total power consumption of 300 mW at a single 1.2 V supply voltage. The maximum operating speed is up to 2.0 GHz at room temperature.

  13. Molecular Aspects of Structure, Gating, and Physiology of pH-Sensitive Background K2P and Kir K+-Transport Channels

    OpenAIRE

    Sepúlveda, Francisco V.; L Pablo Cid; Teulon, Jacques; Niemeyer, María Isabel

    2015-01-01

    K+ channels fulfill roles spanning from the control of excitability to the regulation of transepithelial transport. Here we review two groups of K+ channels, pH-regulated K2P channels and the transport group of Kir channels. After considering advances in the molecular aspects of their gating based on structural and functional studies, we examine their participation in certain chosen physiological and pathophysiological scenarios. Crystal structures of K2P and Kir channels reveal rather unique...

  14. Structural Insights into Divalent Cation Modulations of ATP-Gated P2X Receptor Channels

    Directory of Open Access Journals (Sweden)

    Go Kasuya

    2016-02-01

    Full Text Available P2X receptors are trimeric ATP-gated cation channels involved in physiological processes ranging widely from neurotransmission to pain and taste signal transduction. The modulation of the channel gating, including that by divalent cations, contributes to these diverse physiological functions of P2X receptors. Here, we report the crystal structure of an invertebrate P2X receptor from the Gulf Coast tick Amblyomma maculatum in the presence of ATP and Zn2+ ion, together with electrophysiological and computational analyses. The structure revealed two distinct metal binding sites, M1 and M2, in the extracellular region. The M1 site, located at the trimer interface, is responsible for Zn2+ potentiation by facilitating the structural change of the extracellular domain for pore opening. In contrast, the M2 site, coupled with the ATP binding site, might contribute to regulation by Mg2+. Overall, our work provides structural insights into the divalent cation modulations of P2X receptors.

  15. Contrasted structuring effects of mesoscale features on the seabird community in the Mozambique Channel

    Science.gov (United States)

    Jaquemet, S.; Ternon, J. F.; Kaehler, S.; Thiebot, J. B.; Dyer, B.; Bemanaja, E.; Marteau, C.; Le Corre, M.

    2014-02-01

    of mescoscale features in structuring the tropical seabird community in the Mozambique Channel, in addition to segregating tropical and non-tropical species. The mechanisms underlying the segregation of tropical seabirds seem to partially differ from that of other tropical regions, and this may be a consequence of the strong local mesoscale activity, affecting prey size and availability schemes. Beyond characterising the foraging habitats of the seabird community of the Mozambique Channel, this study highlights the importance of this region as a hot spot for seabirds; especially the southern part, where several endangered sub-Antarctic species over-winter.

  16. Novel deformation structures of pure titanium induced by room temperature equal channel angular pressing

    OpenAIRE

    Y. J. Chen; Li, Y. J.; Xu, X J; Hjelen, J.; Roven, H.J.

    2014-01-01

    Novel deformation structures of commercial pure (CP) Ti induced by equal channel angular pressing (ECAP) at room temperature have been studied by electron backscattering diffraction (EBSD). All the deformation twins occurring in CP Ti, {101?1}, {112?1}, {101?2} and {112?2} have been revealed surprisingly in one original grain as first, secondary or third generation twins. 3 variants of {101?2} twins have been identified. The deformation mechanism of CP-Ti during ECAP at room temperature in co...

  17. A reported archaeal mechanosensitive channel is a structural homolog of MarR-like transcriptional regulators

    OpenAIRE

    Liu, Zhenfeng; Walton, Troy A; Rees, Douglas C.

    2010-01-01

    Several archaeal mechanosensitive (MS) channels have been reported, including one from Thermoplasma volcanium designated MscTV. Here, we report the crystal structure of MscTV at 1.6-Å resolution. Unexpectedly, MscTV was found to be a water-soluble protein exhibiting a winged helix-turn-helix (wHTH) motif, which is the signature of the MarR (multiple antibiotic resistance regulator) family of transcriptional regulators. A cell-based osmotic downshock functional assay demonstrated that MscTV wa...

  18. Evolution of the structure of the VT6 alloy subjected to equal-channel angular pressing

    International Nuclear Information System (INIS)

    Investigation results are reported on the evolution of microstructure and mechanical properties of a two-phase titanium alloy of VT6 (Ti-6Al-4V) with initial globular structure subjected to equal-channel angular pressing (ECAP) at 700 Deg C with 1-12 passes. Experimental results permit studying the evolution of mean grain size, phase morphology, microhardness, mechanical behavior depending on the quantity of ECAP passes. The possibility is found to refine intensively the microstructure in VT6 alloy billets using ECAP

  19. Influence of different structured channels of mesoporous silicate on the controlled ibuprofen delivery

    Energy Technology Data Exchange (ETDEWEB)

    Gao, Lin [Department of Chemistry and Chemical Engineering, College of Environmental and Energy Engineering, Beijing University of Technology, 100 PingLeYuan, Chaoyang District, Beijing 100124 (China); Sun, Jihong, E-mail: jhsun@bjut.edu.cn [Department of Chemistry and Chemical Engineering, College of Environmental and Energy Engineering, Beijing University of Technology, 100 PingLeYuan, Chaoyang District, Beijing 100124 (China); Zhang, Li; Wang, Jinpeng; Ren, Bo [Department of Chemistry and Chemical Engineering, College of Environmental and Energy Engineering, Beijing University of Technology, 100 PingLeYuan, Chaoyang District, Beijing 100124 (China)

    2012-08-15

    The bimodal mesoporous silicas with short random mesoporous channels and MCM-41 with long ordered mesopores were synthesised and modified with 3-(2-aminoethylamino) propyltrimethoxysilane as ibuprofen carriers to study the influence of mesoporous structure on drug delivery property. For further comparing the different mesoporous channels, modified SBA-15 with relative large and long ordered mesopores was also synthesized as drug carriers. The resultant samples were characterized with X-ray diffraction, scanning electron microscopy, transmission electron microscopy, Fourier transform infrared spectra, N{sub 2} adsorption-desorption isotherms, thermogravimetric analyses, solid-state {sup 29}Si NMR spectra, elemental analysis, and UV-vis spectra. Meanwhile, the Korsmeyer-Peppas equation f{sub t} = kt{sup n} was employed to analyze the drug release profile and three release mediums including simulated fluid solution, distilled water and simulated gastric fluid were used. The results indicated that the modified BMMs with the bimodal mesopores leaded to the most drug loading amount of 25.0 mg/0.1 g, while the MCM-41 with the long and one-dimensional mesopores had the least loading amount around 20.3 mg/0.1 g. Meanwhile, the easier diffusion behavior of drug molecules in the bimodal mesopore channels of BMMs resulted in relatively faster drug release properties in comparison with MCM-41, while the release time maintained in SBF for about 12 h (release percent was about 90 wt%) and corresponding release constant k obtained from Korsmeyer-Peppas equation was around 4.10. Highlights: Black-Right-Pointing-Pointer BMMs, MCM-41 and SBA-15 with different mesostructure channels were modified with amino groups via post-treatment procedure. Black-Right-Pointing-Pointer Loading and release profiles of ibuprofen in modified BMMs, MCM-41 and SBA-15. Black-Right-Pointing-Pointer BMMs presents more drug loading amount than MCM-41 as well as better controlled release than SBA-15.

  20. On-line testing of calibration of process instrumentation channels in nuclear power plants. Phase 2, Final report

    Energy Technology Data Exchange (ETDEWEB)

    Hashemian, H.M. [Analysis and Measurement Services Corp., Knoxville, TN (United States)

    1995-11-01

    The nuclear industry is interested in automating the calibration of process instrumentation channels; this report provides key results of one of the sponsored projects to determine the validity of automated calibrations. Conclusion is that the normal outputs of instrument channels in nuclear plants can be monitored over a fuel cycle while the plant is operating to determine calibration drift in the field sensors and associated signal conversion and signal conditioning equipment. The procedure for on-line calibration tests involving calculating the deviation of each instrument channel from the best estimate of the process parameter that the instrument is measuring. Methods were evaluated for determining the best estimate. Deviation of each signal from the best estimate is updated frequently while the plant is operating and plotted vs time for entire fuel cycle, thereby providing time history plots that can reveal channel drift and other anomalies. Any instrument channel that exceeds allowable drift or channel accuracy band is then scheduled for calibration during a refueling outage or sooner. This provides calibration test results at the process operating point, one of the most critical points of the channel operation. This should suffice for most narrow-range instruments, although the calibration of some instruments can be verified at other points throughout their range. It should be pointed out that the calibration of some process signals such as the high pressure coolant injection flow in BWRs, which are normally off- scale during plant operation, can not be tested on-line.

  1. On-line testing of calibration of process instrumentation channels in nuclear power plants. Phase 2, Final report

    International Nuclear Information System (INIS)

    The nuclear industry is interested in automating the calibration of process instrumentation channels; this report provides key results of one of the sponsored projects to determine the validity of automated calibrations. Conclusion is that the normal outputs of instrument channels in nuclear plants can be monitored over a fuel cycle while the plant is operating to determine calibration drift in the field sensors and associated signal conversion and signal conditioning equipment. The procedure for on-line calibration tests involving calculating the deviation of each instrument channel from the best estimate of the process parameter that the instrument is measuring. Methods were evaluated for determining the best estimate. Deviation of each signal from the best estimate is updated frequently while the plant is operating and plotted vs time for entire fuel cycle, thereby providing time history plots that can reveal channel drift and other anomalies. Any instrument channel that exceeds allowable drift or channel accuracy band is then scheduled for calibration during a refueling outage or sooner. This provides calibration test results at the process operating point, one of the most critical points of the channel operation. This should suffice for most narrow-range instruments, although the calibration of some instruments can be verified at other points throughout their range. It should be pointed out that the calibration of some process signals such as the high pressure coolant injection flow in BWRs, which are normally off- scale during plant operation, can not be tested on-line

  2. A Structured Approach to Analyze the Influence of Channel Dimensions on Heat Extraction via Superfluid Helium

    Science.gov (United States)

    Bielert, E. R.; ten Kate, H. H. J.; Verweij, A. P.

    For the luminosity upgrade of the LHC at CERN, the final focusing quadrupole magnets will be exposed to an increased energy deposition in their coil windings. To have a higher heat transfer rate between cable and superfluid helium bath, the cable insulation has been subject of many studies. Improved cable insulation designs, making use of several layers of Kapton tape wound around Rutherford type cables, allow helium to penetrate via micro-channels, which are left open between adjacent Kapton tape sections. To better understand the thermal behaviour at operating temperatures below and some degrees above the helium lambda transition, besides experimental work, several numerical models have been developed to study the influence of the cable insulation. Here we present a new numerical model based on an earlier presented FEM model, which makes use of coupling variables such that the user can easily and quickly change the parameters of interest, giving the possibility to analyse new ideas effectively.

  3. Differential antifungal and calcium channel-blocking activity among structurally related plant defensins.

    Science.gov (United States)

    Spelbrink, Robert G; Dilmac, Nejmi; Allen, Aron; Smith, Thomas J; Shah, Dilip M; Hockerman, Gregory H

    2004-08-01

    Plant defensins are a family of small Cys-rich antifungal proteins that play important roles in plant defense against invading fungi. Structures of several plant defensins share a Cys-stabilized alpha/beta-motif. Structural determinants in plant defensins that govern their antifungal activity and the mechanisms by which they inhibit fungal growth remain unclear. Alfalfa (Medicago sativa) seed defensin, MsDef1, strongly inhibits the growth of Fusarium graminearum in vitro, and its antifungal activity is markedly reduced in the presence of Ca(2+). By contrast, MtDef2 from Medicago truncatula, which shares 65% amino acid sequence identity with MsDef1, lacks antifungal activity against F. graminearum. Characterization of the in vitro antifungal activity of the chimeras containing portions of the MsDef1 and MtDef2 proteins shows that the major determinants of antifungal activity reside in the carboxy-terminal region (amino acids 31-45) of MsDef1. We further define the active site by demonstrating that the Arg at position 38 of MsDef1 is critical for its antifungal activity. Furthermore, we have found for the first time, to our knowledge, that MsDef1 blocks the mammalian L-type Ca(2+) channel in a manner akin to a virally encoded and structurally unrelated antifungal toxin KP4 from Ustilago maydis, whereas structurally similar MtDef2 and the radish (Raphanus sativus) seed defensin Rs-AFP2 fail to block the L-type Ca(2+) channel. From these results, we speculate that the two unrelated antifungal proteins, KP4 and MsDef1, have evolutionarily converged upon the same molecular target, whereas the two structurally related antifungal plant defensins, MtDef2 and Rs-AFP2, have diverged to attack different targets in fungi. PMID:15299136

  4. Understanding the Structure of Amorphous Thin Film Hafnia - Final Paper

    Energy Technology Data Exchange (ETDEWEB)

    Miranda, Andre [SLAC National Accelerator Lab., Menlo Park, CA (United States)

    2015-08-27

    Hafnium Oxide (HfO2) amorphous thin films are being used as gate oxides in transistors because of their high dielectric constant (κ) over Silicon Dioxide. The present study looks to find the atomic structure of HfO2 thin films which hasn’t been done with the technique of this study. In this study, two HfO2 samples were studied. One sample was made with thermal atomic layer deposition (ALD) on top of a Chromium and Gold layer on a silicon wafer. The second sample was made with plasma ALD on top of a Chromium and Gold layer on a Silicon wafer. Both films were deposited at a thickness of 50nm. To obtain atomic structure information, Grazing Incidence X-ray diffraction (GIXRD) was carried out on the HfO2 samples. Because of this, absorption, footprint, polarization, and dead time corrections were applied to the scattering intensity data collected. The scattering curves displayed a difference in structure between the ALD processes. The plasma ALD sample showed the broad peak characteristic of an amorphous structure whereas the thermal ALD sample showed an amorphous structure with characteristics of crystalline materials. This appears to suggest that the thermal process results in a mostly amorphous material with crystallites within. Further, the scattering intensity data was used to calculate a pair distribution function (PDF) to show more atomic structure. The PDF showed atom distances in the plasma ALD sample had structure up to 10 Å, while the thermal ALD sample showed the same structure below 10 Å. This structure that shows up below 10 Å matches the bond distances of HfO2 published in literature. The PDF for the thermal ALD sample also showed peaks up to 20 Å, suggesting repeating atomic spacing outside the HfO2 molecule in the sample. This appears to suggest that there is some crystalline structure within the thermal ALD sample.

  5. Stability of Bulk Metallic Glass Structure. Final Report

    Energy Technology Data Exchange (ETDEWEB)

    Jain, H.; Williams, D. B.

    2003-06-01

    The fundamental origins of the stability of the (Pd-Ni){sub 80}P{sub 20} bulk metallic glasses (BMGs), a prototype for a whole class of BMG formers, were explored. While much of the properties of their BMGs have been characterized, their glass-stability have not been explained in terms of the atomic and electronic structure. The local structure around all three constituent atoms was obtained, in a complementary way, using extended X-ray absorption fine structure (EXAFS), to probe the nearest neighbor environment of the metals, and extended energy loss fine structure (EXELFS), to investigate the environment around P. The occupied electronic structure was investigated using X-ray photoelectron spectroscopy (XPS). The (Pd-Ni){sub 80}P{sub 20} BMGs receive their stability from cumulative, and interrelated, effects of both atomic and electronic origin. The stability of the (Pd-Ni){sub 80}P{sub 20} BMGs can be explained in terms of the stability of Pd{sub 60}Ni{sub 20}P{sub 20} and Pd{sub 30}Ni{sub 50}P{sub 20}, glasses at the end of BMG formation. The atomic structure in these alloys is very similar to those of the binary phosphide crystals near x=0 and x=80, which are trigonal prisms of Pd or Ni atoms surrounding P atoms. Such structures are known to exist in dense, randomly-packed systems. The structure of the best glass former in this series, Pd{sub 40}Ni{sub 40}P{sub 20} is further described by a weighted average of those of Pd{sub 30}Ni{sub 50}P{sub 20} and Pd{sub 60}Ni{sub 20}P{sub 20}. Bonding states present only in the ternary alloys were found and point to a further stabilization of the system through a negative heat of mixing between Pd and Ni atoms. The Nagel and Tauc criterion, correlating a decrease in the density of states at the Fermi level with an increase in the glass stability, was consistent with greater stability of the Pd{sub x}Ni{sub 80-x}P{sub 20} glasses with respect to the binary alloys of P. A valence electron concentration of 1.8 e/a, which

  6. Structural evolution of carbon during oxidation. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Sarofim, A.F.

    1998-04-01

    The examination of the structural evolution of carbon during oxidation has proven to be of scientific interest. Early modeling work of fluidized bed combustion showed that most of the reactions of interest occurs in the micropores, and this work has concentrated on these pores. This work has concentrated on evolution of macroporosity and microporosity of carbons during kinetic controlled oxidation using SAXS, CO{sub 2} and TEM analysis. Simple studies of fluidized bed combustion of coal chars has shown that many of the events considered fragmentation events previously may in fact be {open_quotes}hidden{close_quotes} or nonaccessible porosity. This makes the study of the microporous combustion characteristics of carbon even more important. The generation of a combustion resistant grid, coupled with measurements of the SAXS and CO{sub 2} surface areas, fractal analysis and TEM. Studies has confirmed that soot particles shrink during their oxidation, as previously suspected. However, this shrinkage results in an overall change in structure. This structure becomes, on a radial basis, much more ordered near the edges, while the center itself becomes transparent to the TEM beam, implying a total lack of structure in this region. Although complex, this carbon structure is probably burning as to keep the density of the soot particles nearly the same. The TEM techniques developed for examination of soots has also been applied to Spherocarb. The Spherocarb during oxidation also increases its ordering. This ordering, by present theories, would imply that the reactivity would go. However, the reactivity goes up, implying that structure of carbon is secondary in importance to catalytic effects.

  7. Uranium(VI) coordination polymers with pyromellitate ligand: Unique 1D channel structures and diverse fluorescence

    Science.gov (United States)

    Zhang, Yingjie; Bhadbhade, Mohan; Karatchevtseva, Inna; Price, Jason R.; Liu, Hao; Zhang, Zhaoming; Kong, Linggen; Čejka, Jiří; Lu, Kim; Lumpkin, Gregory R.

    2015-03-01

    Three new coordination polymers of uranium(VI) with pyromellitic acid (H4btca) have been synthesized and structurally characterized. (ED)[(UO2)(btca)]·(DMSO)·3H2O (1) (ED=ethylenediammonium; DMSO=dimethylsulfoxide) has a lamellar structure with intercalation of ED and DMSO. (NH4)2[(UO2)6O2(OH)6(btca)]·~6H2O (2) has a 3D framework built from 7-fold coordinated uranyl trinuclear units and btca ligands with 1D diamond-shaped channels (~8.5 Å×~8.6 Å). [(UO2)2(H2O)(btca)]·4H2O (3) has a 3D network constructed by two types of 7-fold coordinated uranium polyhedron. The unique μ5-coordination mode of btca in 3 enables the formation of 1D olive-shaped large channels (~4.5 Å×~19 Å). Vibrational modes, thermal stabilities and fluorescence properties have been investigated.

  8. Structural elements in the Girk1 subunit that potentiate G protein–gated potassium channel activity

    OpenAIRE

    Wydeven, Nicole; Young, Daniele; Mirkovic, Kelsey; Wickman, Kevin

    2012-01-01

    G protein–gated inwardly rectifying K+ (Girk/KIR3) channels mediate the inhibitory effect of many neurotransmitters on excitable cells. Girk channels are tetramers consisting of various combinations of four mammalian Girk subunits (Girk1 to -4). Although Girk1 is unable to form functional homomeric channels, its presence in cardiac and neuronal channel complexes correlates with robust channel activity. This study sought to better understand the potentiating influence of Girk1, using the GABAB...

  9. Final Technical Report: Electronic Structure Workshop (ES13)

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Shiwei [College of William and Mary, Williamsburg, VA (United States)

    2015-02-26

    The 25th Annual Workshop on Recent Developments in Electronic Structure Methods (ES2013) was successfully held at the College of William & Mary in Williamsburg VA on June 11-14, 2013. The workshop website is at http://es13.wm.edu/ , which contains updated information on the workshop and a permanent archive of the scientific contents. DOE's continued support has been instrumental to the success of the workshop.

  10. Seismic input and soil--structure interaction. Final report

    International Nuclear Information System (INIS)

    An assessment was made of the adequacy of some engineering assumptions made in the definition of seismic input and methods used for the analysis of seismic soil--structure interaction of nuclear power plants. The primary goal was to determine the range of applicability of the acceptance criteria presented in Section 3.7 of the United States Nuclear Regulatory Commission (USNRC) Standard Review Plan (SRP) and to note the specific instances wherein the criteria given in the SRP require modification or analysis on a site-specific basis. A rationale for this study and its relationship to the state of the art in the area of seismic input and soil--structure interaction analyses is discussed first. Then the objectives, method, results, conclusions, and recommendations of the six tasks comprising this study are presented. Although many of the assumptions reviewed were general in nature, some were specific to the computer programs used for soil--structure interaction analyses and mentioned with approval in the SRP. 197 figures, 10 tables

  11. Crystal Structure of the Human K2P TRAAK, a Lipid- and Mechano-Sensitive K[superscript +] Ion Channel

    Energy Technology Data Exchange (ETDEWEB)

    Brohawn, Stephen G.; del Mármol, Josefina; MacKinnon, Roderick (Rockefeller)

    2012-03-01

    TRAAK channels, members of the two-pore domain K{sup +} (potassium ion) channel family K2P, are expressed almost exclusively in the nervous system and control the resting membrane potential. Their gating is sensitive to polyunsaturated fatty acids, mechanical deformation of the membrane, and temperature changes. Physiologically, these channels appear to control the noxious input threshold for temperature and pressure sensitivity in dorsal root ganglia neurons. We present the crystal structure of human TRAAK at a resolution of 3.8 angstroms. The channel comprises two protomers, each containing two distinct pore domains, which create a two-fold symmetric K{sup +} channel. The extracellular surface features a helical cap, 35 angstroms tall, that creates a bifurcated pore entry way and accounts for the insensitivity of two-pore domain K{sup +} channels to inhibitory toxins. Two diagonally opposed gate-forming inner helices form membrane-interacting structures that may underlie this channel's sensitivity to chemical and mechanical properties of the cell membrane.

  12. Probing the structure of the mechanosensitive channel of small conductance in lipid bilayers with pulsed electron-electron double resonance

    OpenAIRE

    Ward, Richard; Pliotas, Christos; Branigan, Emma; Hacker, Christian; Rasmussen, Akiko; Hagelueken, Gregor; Booth, Ian R.; Miller, Samantha; Lucocq, John; Naismith, Jim; Schiemann, Olav

    2014-01-01

    Mechanosensitive channel proteins are important safety valves against osmotic shock in bacteria, and are involved in sensing touch and sound waves in higher organisms. The mechanosensitive channel of small conductance (MscS) has been extensively studied. Pulsed electron-electron double resonance (PELDOR or DEER) of detergent-solubilized protein confirms that as seen in the crystal structure, the outer ring of transmembrane helices do not pack against the pore- forming helices, creating an app...

  13. Final Report - Investigation of Intermittent Turbulence and Turbulent Structures in the Presence of Controlled Sheared Flows

    Energy Technology Data Exchange (ETDEWEB)

    Gilmore, Mark A. [University of New Mexico

    2013-06-27

    Final Report for grant DE-FG02-06ER54898. The dynamics and generation of intermittent plasma turbulent structures, widely known as "blobs" have been studied in the presence of sheared plasma flows in a controlled laboratory experiment.

  14. Vertical structure of extreme currents in the Faroe-Bank Channel

    Directory of Open Access Journals (Sweden)

    C. Carollo

    2005-09-01

    Full Text Available Extreme currents are studied with the aim of understanding their vertical and spatial structures in the Faroe-Bank Channel. Acoustic Doppler Current Profiler time series recorded in 3 deployments in this channel were investigated. To understand the main features of extreme events, the measurements were separated into their components through filtering and tidal analysis before applying the extreme value theory to the surge component. The Generalized Extreme Value (GEV distribution and the Generalized Pareto Distribution (GPD were used to study the variation of surge extremes from near-surface to deep waters. It was found that this component alone is not able to explain the extremes measured in total currents, particularly below 500 m. Here the mean residual flow enhanced by tidal rectification was found to be the component feature dominating extremes. Therefore, it must be taken into consideration when applying the extreme value theory, not to underestimate the return level for total currents. Return value speeds up to 250 cm s–1 for 50/250 years return period were found for deep waters, where the flow is constrained by the topography at bearings near 300/330° It is also found that the UK Meteorological Office FOAM model is unable to reproduce either the magnitude or the form for the extremes, perhaps due to its coarse vertical and horizontal resolution, and is thus not suitable to model extremes on a regional scale.

    Keywords. Oceanography: Physical (Currents; General circulation; General or miscellaneous

  15. High-resolution polypeptide structure and dynamics in anisotropic environments: The gramicidin channel

    Energy Technology Data Exchange (ETDEWEB)

    Cross, T.A.; Lee, K.C.; Ketchem, R.R.; Hu, W.; Lazo, N.D.; Huo, S. [Florida State Univ., Tallahassee, FL (United States)

    1994-12-01

    To understand the details of macromolecular function, high-resolution structural and dynamic detail is essential. The polypeptide fold of the gramicidin channel has been effectively modeled for the past 20 years, yet the functional changes in conductance and channel lifetime associated with amino acid substitutions cannot be predicted. To accomplish this goal, high-resolution electrostatic modeling and the precise orientation of all dipoles are required. Furthermore, an enhanced knowledge of the complex molecular environment of this membrane-bound peptide is needed. An aqueous environment is relatively uniform and achiral. The membrane environment is very heterogenous and chiral. A knowledge of the interactions, specific and nonspecific, between peptide and lipid will aid in developing a better understanding of this environment. To accomplish this goal, it is necessary to study the peptide in an extended lipid bilayer, rather than in a vesicular or micellar form. These latter environments are likely to possess increased dynamics, increased water penetration, and distorted interactions between the polypeptide and membrane surface. To perform NMR studies on bilayer bound peptides, solid state NMR methods are required, and for specific site information, isotopic labels are incorporated using solid phase peptide synthesis.

  16. Structural characterization of the mechanosensitive channel candidate MCA2 from Arabidopsis thaliana.

    Directory of Open Access Journals (Sweden)

    Hideki Shigematsu

    Full Text Available Mechanosensing in plants is thought to be governed by sensory complexes containing a Ca²⁺-permeable, mechanosensitive channel. The plasma membrane protein MCA1 and its paralog MCA2 from Arabidopsis thaliana are involved in mechanical stress-induced Ca²⁺ influx and are thus considered as candidates for such channels or their regulators. Both MCA1 and MCA2 were functionally expressed in Sf9 cells using a baculovirus system in order to elucidate their molecular natures. Because of the abundance of protein in these cells, MCA2 was chosen for purification. Purified MCA2 in a detergent-solubilized state formed a tetramer, which was confirmed by chemical cross-linking. Single-particle analysis of cryo-electron microscope images was performed to depict the overall shape of the purified protein. The three-dimensional structure of MCA2 was reconstructed at a resolution of 26 Å from 5,500 particles and appears to comprise a small transmembrane region and large cytoplasmic region.

  17. Structure-activity studies on 1,4-dihydropyridine calcium channel antagonists and activators

    International Nuclear Information System (INIS)

    Four series of 1,4-dihydropyridine Ca2+ channel antagonists related to mifedipine were synthesized by a modified Hantzsch procedure to determine the effects of ester (C3 = CO2Me, C5 = CO2R) and phenyl (C4) substituents on pharmacological and radioligand binding ([H]nitrendipine) activities in guinea pig ileal longitudinal smooth muscle. Two series of Ca2+ channel activator 1,4-dihydropyridines, BAY K 8644 (C3 = NO2, C5 = CO2Me) and CGP 28392 (C2,3 = lactone, C5 = CO2Me) were biochemically evaluated by inhibition of [3H]nitrendipine binding in guinea pig ileal longitudinal smooth muscle membranes to establish fundamental structure-activity requirements. A homologous series of bis-1,4-dihydropyridines were synthesized, pharmacologically and biochemically evaluated in an attempt to explore the distribution of the 1,4-dihydropyridine receptor in guinea pig ileal longitudinal smooth muscle membranes. Several potential affinity labels including ester substituted 3- and 4-fluorosulfonyl benzoyl and isothiocyanate derivatives were synthesized and evaluated by inhibition of [3H]nitrendipine binding

  18. Structural basis of control of inward rectifier Kir2 channel gating by bulk anionic phospholipids.

    Science.gov (United States)

    Lee, Sun-Joo; Ren, Feifei; Zangerl-Plessl, Eva-Maria; Heyman, Sarah; Stary-Weinzinger, Anna; Yuan, Peng; Nichols, Colin G

    2016-09-01

    Inward rectifier potassium (Kir) channel activity is controlled by plasma membrane lipids. Phosphatidylinositol-4,5-bisphosphate (PIP2) binding to a primary site is required for opening of classic inward rectifier Kir2.1 and Kir2.2 channels, but interaction of bulk anionic phospholipid (PL(-)) with a distinct second site is required for high PIP2 sensitivity. Here we show that introduction of a lipid-partitioning tryptophan at the second site (K62W) generates high PIP2 sensitivity, even in the absence of PL(-) Furthermore, high-resolution x-ray crystal structures of Kir2.2[K62W], with or without added PIP2 (2.8- and 2.0-Å resolution, respectively), reveal tight tethering of the C-terminal domain (CTD) to the transmembrane domain (TMD) in each condition. Our results suggest a refined model for phospholipid gating in which PL(-) binding at the second site pulls the CTD toward the membrane, inducing the formation of the high-affinity primary PIP2 site and explaining the positive allostery between PL(-) binding and PIP2 sensitivity. PMID:27527100

  19. The final calibration of the nuclear power channels of the IPEN/MB-01 reactor by the use of the activation foils and the Monte Carlo method

    International Nuclear Information System (INIS)

    This work aims the final calibration of the nuclear power channels of the IPEN/MB-01 reactor using infinitely dilute gold foils (1% Au - 99% Al), this is, metallic alloy in the concentration levels such that the phenomena of flux disturbance, as the self-shielding factors become worthless. During the irradiations were monitored the nuclear power channels of the reactor used to obtain the neutron flux and consequently the power operation of the reactor. The current values were digitally acquired during each second of operation. Once the foils were irradiated for the analysis of its induced activity it was used a detection system of hyper-pure germanium. Ally to this experimental procedure it was used the computational code MCNP-4C as a tool for theoretical modeling of the core of the IPEN/MB-01 reactor. Thus it was possible to determine the parameters necessary to obtain the power operation of the reactor, such as the inverse of the thermal disadvantage factor and fast fission factor. Thus, using the correlation between average thermal neutron flux, proportional to a power operation and the average of the digital values of current of the nuclear channels, during the irradiations of the foils, it was obtained the calibration of the nuclear power channels, the ionization chambers number 5 and 6 of the IPEN/MB-01 reactor. (author)

  20. Solution NMR structure of the V27A drug resistant mutant of influenza A M2 channel

    International Nuclear Information System (INIS)

    Research highlights: → This paper reports the structure of the V27A drug resistant mutant of the M2 channel of influenza A virus. → High quality NMR data allowed a better-defined structure for the C-terminal region of the M2 channel. → Using the structure, we propose a proton transfer pathway during M2 proton conduction. → Structural comparison between the wildtype, V27A and S31N variants allowed an in-depth analysis of possible modes of drug resistance. → Distinct feature of the V27A channel pore also provides an explanation for its faster rate of proton conduction. -- Abstract: The M2 protein of influenza A virus forms a proton-selective channel that is required for viral replication. It is the target of the anti-influenza drugs, amantadine and rimantadine. Widespread drug resistant mutants, however, has greatly compromised the effectiveness of these drugs. Here, we report the solution NMR structure of the highly pathogenic, drug resistant mutant V27A. The structure reveals subtle structural differences from wildtype that maybe linked to drug resistance. The V27A mutation significantly decreases hydrophobic packing between the N-terminal ends of the transmembrane helices, which explains the looser, more dynamic tetrameric assembly. The weakened channel assembly can resist drug binding either by destabilizing the rimantadine-binding pocket at Asp44, in the case of the allosteric inhibition model, or by reducing hydrophobic contacts with amantadine in the pore, in the case of the pore-blocking model. Moreover, the V27A structure shows a substantially increased channel opening at the N-terminal end, which may explain the faster proton conduction observed for this mutant. Furthermore, due to the high quality NMR data recorded for the V27A mutant, we were able to determine the structured region connecting the channel domain to the C-terminal amphipathic helices that was not determined in the wildtype structure. The new structural data show that the

  1. Solution NMR structure of the V27A drug resistant mutant of influenza A M2 channel

    Energy Technology Data Exchange (ETDEWEB)

    Pielak, Rafal M. [Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115 (United States); Program in Biological and Biomedical Sciences, Harvard Medical School, Boston, MA 02115 (United States); Chou, James J., E-mail: chou@cmcd.hms.harvard.edu [Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115 (United States)

    2010-10-08

    Research highlights: {yields} This paper reports the structure of the V27A drug resistant mutant of the M2 channel of influenza A virus. {yields} High quality NMR data allowed a better-defined structure for the C-terminal region of the M2 channel. {yields} Using the structure, we propose a proton transfer pathway during M2 proton conduction. {yields} Structural comparison between the wildtype, V27A and S31N variants allowed an in-depth analysis of possible modes of drug resistance. {yields} Distinct feature of the V27A channel pore also provides an explanation for its faster rate of proton conduction. -- Abstract: The M2 protein of influenza A virus forms a proton-selective channel that is required for viral replication. It is the target of the anti-influenza drugs, amantadine and rimantadine. Widespread drug resistant mutants, however, has greatly compromised the effectiveness of these drugs. Here, we report the solution NMR structure of the highly pathogenic, drug resistant mutant V27A. The structure reveals subtle structural differences from wildtype that maybe linked to drug resistance. The V27A mutation significantly decreases hydrophobic packing between the N-terminal ends of the transmembrane helices, which explains the looser, more dynamic tetrameric assembly. The weakened channel assembly can resist drug binding either by destabilizing the rimantadine-binding pocket at Asp44, in the case of the allosteric inhibition model, or by reducing hydrophobic contacts with amantadine in the pore, in the case of the pore-blocking model. Moreover, the V27A structure shows a substantially increased channel opening at the N-terminal end, which may explain the faster proton conduction observed for this mutant. Furthermore, due to the high quality NMR data recorded for the V27A mutant, we were able to determine the structured region connecting the channel domain to the C-terminal amphipathic helices that was not determined in the wildtype structure. The new structural

  2. Flow structure and heat exchange analysis in internal cooling channel of gas turbine blade

    Science.gov (United States)

    Szwaba, Ryszard; Kaczynski, Piotr; Doerffer, Piotr; Telega, Janusz

    2016-08-01

    This paper presents the study of the flow structure and heat transfer, and also their correlations on the four walls of a radial cooling passage model of a gas turbine blade. The investigations focus on heat transfer and aerodynamic measurements in the channel, which is an accurate representation of the configuration used in aeroengines. Correlations for the heat transfer coefficient and the pressure drop used in the design of radial cooling passages are often developed from simplified models. It is important to note that real engine passages do not have perfect rectangular cross sections, but include corner fillet, ribs with fillet radii and special orientation. Therefore, this work provides detailed fluid flow and heat transfer data for a model of radial cooling geometry which possesses very realistic features.

  3. A novel reduced-complexity group detection structure in MIMO frequency selective fading channels

    KAUST Repository

    Qaraqe, Khalid A.

    2010-09-01

    In this paper a novel reduced complexity detection method named modified symbol flipping method is introduced and its advantages on reducing the burden of the calculations at the receiver compared to the optimum maximum likelihood detection method on multiple input- multiple output frequency selective fading channels are explained. The initial concept of the symbol flipping method is derived from a preliminary detection scheme named bit flipping which was introduced in [1]. The detection structure employed in this paper is ing, detection, and cancellation. On the detection stage, the proposed method is employed and the results are compared to the group maximum likelihood detection scheme proposed in [2]. Simulation results show that a 6 dB performance gain can be achieved at the expense of a slight increase in complexity in comparison with the conventional symbol flipping scheme. © 2010 Crown.

  4. Cryo-EM Structures of the Magnesium Channel CorA Reveal Symmetry Break upon Gating.

    Science.gov (United States)

    Matthies, Doreen; Dalmas, Olivier; Borgnia, Mario J; Dominik, Pawel K; Merk, Alan; Rao, Prashant; Reddy, Bharat G; Islam, Shahidul; Bartesaghi, Alberto; Perozo, Eduardo; Subramaniam, Sriram

    2016-02-11

    CorA, the major Mg(2+) uptake system in prokaryotes, is gated by intracellular Mg(2+) (KD ∼ 1-2 mM). X-ray crystallographic studies of CorA show similar conformations under Mg(2+)-bound and Mg(2+)-free conditions, but EPR spectroscopic studies reveal large Mg(2+)-driven quaternary conformational changes. Here, we determined cryo-EM structures of CorA in the Mg(2+)-bound closed conformation and in two open Mg(2+)-free states at resolutions of 3.8, 7.1, and 7.1 Å, respectively. In the absence of bound Mg(2+), four of the five subunits are displaced to variable extents (∼ 10-25 Å) by hinge-like motions as large as ∼ 35° at the stalk helix. The transition between a single 5-fold symmetric closed state and an ensemble of low Mg(2+), open, asymmetric conformational states is, thus, the key structural signature of CorA gating. This mechanism is likely to apply to other structurally similar divalent ion channels. PMID:26871634

  5. FLUID-STRUCTURE INTERACTION OF HYDRODYNAMIC DAMPER DURING THE RUSH INTO THE WATER CHANNEL

    Institute of Scientific and Technical Information of China (English)

    XU Qing-xin; SHEN Rong-ying

    2008-01-01

    The hydrodynamic damper is a device to decrease the motion of armament carrier by use of the water resistance. When hydrodynamic damper rushes into the water channel with high velocity, it is a complicated flow phenomenon with fluid-structure interaction, free surface and moving interface. Numerical simulation using the Smoothed Particle Hydrodynamics (SPH) method coupled with the Finite Element (FE) method was successfully conducted to predict the dynamic characteristics of hydrodynamic damper. The water resistance, the pressure in the interface and the stress of structure were investigated, and the relationship among the peak of water resistance, initial velocity and actual draught was also discussed. The empirical formula was put forward to predict the water resistance. And it is found that the resistance coefficient is commonly in the range of 0.3≤C ≤0.5, when the initial velocity is larger than 50 m/s. It can be seen that the SPH method coupled with the FE method has many obvious advantages over other numerical methods for this complicated flow problem with fluid-structure interaction.

  6. Single-top production t-channel cross section measurement in the electron+jets final state at ATLAS with 35 pb{sup -1}of data

    Energy Technology Data Exchange (ETDEWEB)

    Khoriauli, Gia

    2012-07-15

    The cross section of the Standard Model electroweak production of a single top quark in the t-channel has been measured using the LHC proton-proton collision data at {radical}(s)=7 TeV, 35 pb{sup -1} of integrated luminosity, recorded by the ATLAS detector during the year 2010. The measurement has been based on a selection of the collision events with an electron and one b-tagged hadronic jet in the central region of the detector and one extra jet in the forward region of the detector. These requirements are dictated by the topology of the final state particles in the t-channel process. They helped to optimize an expected fraction of the t-channel process, according to a study based on Monte-Carlo simulation, in the selected events and suppress the contribution of the background processes. The main background processes such as production of hadronic jets via the strong interaction and production of a single W boson with associated hadronic jets are measured by means of data driven methods developed in this work. The measured cross section of single top quark production in the t-channel process is 59{sup +44}{sub -39}(stat.){sup +63}{sub -39}(syst.) pb. The measured upper limit on the cross section is 226 pb at the 95% confidence level. The results are in agreement with the latest theoretical prediction of the t-channel cross section of the Standard Model production of a single top quark calculated at NNLO, 64.6{sup +3.3}{sub -2.6} pb, considering m {sub t-quark}=172.5 GeV.

  7. Single-top production t-channel cross section measurement in the electron+jets final state at ATLAS with 35 pb-1of data

    International Nuclear Information System (INIS)

    The cross section of the Standard Model electroweak production of a single top quark in the t-channel has been measured using the LHC proton-proton collision data at √(s)=7 TeV, 35 pb-1 of integrated luminosity, recorded by the ATLAS detector during the year 2010. The measurement has been based on a selection of the collision events with an electron and one b-tagged hadronic jet in the central region of the detector and one extra jet in the forward region of the detector. These requirements are dictated by the topology of the final state particles in the t-channel process. They helped to optimize an expected fraction of the t-channel process, according to a study based on Monte-Carlo simulation, in the selected events and suppress the contribution of the background processes. The main background processes such as production of hadronic jets via the strong interaction and production of a single W boson with associated hadronic jets are measured by means of data driven methods developed in this work. The measured cross section of single top quark production in the t-channel process is 59+44-39(stat.)+63-39(syst.) pb. The measured upper limit on the cross section is 226 pb at the 95% confidence level. The results are in agreement with the latest theoretical prediction of the t-channel cross section of the Standard Model production of a single top quark calculated at NNLO, 64.6+3.3-2.6 pb, considering m t-quark=172.5 GeV.

  8. The contribution of multi-channel pion-pion scattering to the final states of Upsilon-meson family decays

    Czech Academy of Sciences Publication Activity Database

    Surovtsev, Yu .S.; Bydžovský, Petr; Gutsche, T.; Kaminski, R.; Lyubovitskij, V. E.; Nagy, M.

    Vol. 81. Les Ulis : EDP Sciences, 2014, 05028. ISSN 2100-014X. [13th International Workshop on Production, Properties and Interaction of Mesons (MESON 2014). Krakow (PL), 29.05.2014-03.06.2014] R&D Projects: GA MŠk LG14004; GA ČR(CZ) GAP203/12/2126 Institutional support: RVO:61389005 Keywords : scattering * pion-pion * multi-channel Subject RIV: BE - Theoretical Physics

  9. The human cardiac muscle ryanodine receptor-calcium release channel: identification, primary structure and topological analysis.

    Science.gov (United States)

    Tunwell, R E; Wickenden, C; Bertrand, B M; Shevchenko, V I; Walsh, M B; Allen, P D; Lai, F A

    1996-09-01

    Rapid Ca2+ efflux from intracellular stores during cardiac muscle excitation-contraction coupling is mediated by the ryanodine-sensitive calcium-release channel, a large homotetrameric complex present in the sarcoplasmic reticulum. We report here the identification, primary structure and topological analysis of the ryanodine receptor-calcium release channel from human cardiac muscle (hRyR-2). Consistent with sedimentation and immunoblotting studies on the hRyR-2 protein, sequence analysis of ten overlapping cDNA clones reveals an open reading frame of 14901 nucleotides encoding a protein of 4967 amino acid residues with a predicted molecular mass of 564 569 Da for hRyR-2. In-frame insertions corresponding to eight and ten amino acid residues were found in two of the ten cDNAs isolated, suggesting that novel, alternatively spliced transcripts of the hRyR-2 gene might exist. Six hydrophobic stretches, which are present within the hRyR-2 C-terminal 500 amino acids and are conserved in all RyR sequences, may be involved in forming the transmembrane domain that constitutes the Ca(2+)-conducting pathway, in agreement with competitive ELISA studies with a RyR-2-specific antibody. Sequence alignment of hRyR-2 with other RyR isoforms indicates a high level of overall identity within the RyR family, with the exception of two important regions that exhibit substantial variability. Phylogenetic analysis suggests that the RyR-2 isoform diverged from a single ancestral gene before the RyR-1 and RyR-3 isoforms to form a distinct branch of the RyR family tree. PMID:8809036

  10. Prediction of Turbulent Flow Structure in a Fully Developed Rib-Roughened Narrow Rectangular Channel

    Institute of Scientific and Technical Information of China (English)

    Md. Shafiqul IsIam; M. Kaminaga; R. Hino; M. Monde

    2009-01-01

    Fully developed turbulent water-flow structure over one-side repeated-fibs in narrow two-dimensional rectangular channels was investigated experimentally by Particle Image Velocimetry (PIV) and analytically by the standard κ-εand nonlinear κ-ε turbulent models. Two fib-pitch to height ratios (p/k) of 10 and 20 were investigated while the rib height was held constant at 4 mm. The rib height-to-channel equivalent diameter ratio (k/De) was 0.1. The streamwise mean velocity and turbulent kinetic energy distributions at six selected axial stations from the center fib for the two Reynolds number (Re) of 7,000 and 20,000 were obtained and compared with the predicted one The performance ability in predicting separating and reattaching turbulent water-flow between the standard κ-ε and nonlinear κ-ε models had yielded no clear conclusion. A large-scale turbulent eddy was generated by the rib promoter and then propagated into the mainstream flow, which led to the deformation of the velocity profile. The turbulent kinetic energy was increased about two times higher at p/k = 20 than that at p/k =10 under the two Reynolds numbers. The effect of the p/k value and the Reynolds number (Re) on reattachment length (XR) was investigated and showed that the p/k and Re had no significant effect on the reattachment length beyond a critical value of Re = 15,000 where XR was found to be approximately 4 times of the rib height under water-flow condi-tion.

  11. Laser direct writing 3D structures for microfluidic channels: flow meter and mixer

    Science.gov (United States)

    Lin, Chih-Lang; Liu, Yi-Jui; Lin, Zheng-Da; Wu, Bo-Long; Lee, Yi-Hsiung; Shin, Chow-Shing; Baldeck, Patrice L.

    2015-03-01

    The 3D laser direct-writing technology is aimed at the modeling of arbitrary three-dimensional (3D) complex microstructures by scanning a laser-focusing point along predetermined trajectories. Through the perspective technique, the details of designed 3D structures can be properly fabricated in a microchannel. This study introduces a direct reading flow meter and a 3D passive mixer fabricated by laser direct writing for microfluidic applications. The flow meter consists of two rod-shaped springs, a pillar, an anchor, and a wedge-shaped indicator, installed inside a microfluidic channel. The indicator is deflected by the flowing fluid while restrained by the spring to establish an equilibrium indication according to the flow rate. The measurement is readily carried out by optical microscopy observation. The 3D passive Archimedes-screw-shaped mixer is designed to disturb the laminar flow 3D direction for enhancing the mixing efficiency. The simulation results indicate that the screw provides 3D disturbance of streamlines in the microchannel. The mixing demonstration for fluids flowing in the micrchannel approximately agrees with the simulation result. Thanks to the advantage of the laser direct writing technology, this study performs the ingenious applications of 3D structures for microchannels.

  12. Structural characteristics of hydrated protons in the conductive channels: effects of confinement and fluorination studied by molecular dynamics simulation.

    Science.gov (United States)

    Zhang, Ning; Song, Yuechun; Ruan, Xuehua; Yan, Xiaoming; Liu, Zhao; Shen, Zhuanglin; Wu, Xuemei; He, Gaohong

    2016-09-21

    The relationship between the proton conductive channel and the hydrated proton structure is of significant importance for understanding the deformed hydrogen bonding network of the confined protons which matches the nanochannel. In general, the structure of hydrated protons in the nanochannel of the proton exchange membrane is affected by several factors. To investigate the independent effect of each factor, it is necessary to eliminate the interference of other factors. In this paper, a one-dimensional carbon nanotube decorated with fluorine was built to investigate the independent effects of nanoscale confinement and fluorination on the structural properties of hydrated protons in the nanochannel using classical molecular dynamics simulation. In order to characterize the structure of hydrated protons confined in the channel, the hydrogen bonding interaction between water and the hydrated protons has been studied according to suitable hydrogen bond criteria. The hydrogen bond criteria were proposed based on the radial distribution function, angle distribution and pair-potential energy distribution. It was found that fluorination leads to an ordered hydrogen bonding structure of the hydrated protons near the channel surface, and confinement weakens the formation of the bifurcated hydrogen bonds in the radial direction. Besides, fluorination lowers the free energy barrier of hydronium along the nanochannel, but slightly increases the barrier for water. This leads to disintegration of the sequential hydrogen bond network in the fluorinated CNTs with small size. In the fluorinated CNTs with large diameter, the lower degree of confinement produces a spiral-like sequential hydrogen bond network with few bifurcated hydrogen bonds in the central region. This structure might promote unidirectional proton transfer along the channel without random movement. This study provides the cooperative effect of confinement dimension and fluorination on the structure and hydrogen

  13. Structure of the SthK carboxy-terminal region reveals a gating mechanism for cyclic nucleotide-modulated ion channels.

    Directory of Open Access Journals (Sweden)

    Divya Kesters

    Full Text Available Cyclic nucleotide-sensitive ion channels are molecular pores that open in response to cAMP or cGMP, which are universal second messengers. Binding of a cyclic nucleotide to the carboxyterminal cyclic nucleotide binding domain (CNBD of these channels is thought to cause a conformational change that promotes channel opening. The C-linker domain, which connects the channel pore to this CNBD, plays an important role in coupling ligand binding to channel opening. Current structural insight into this mechanism mainly derives from X-ray crystal structures of the C-linker/CNBD from hyperpolarization-activated cyclic nucleotide-modulated (HCN channels. However, these structures reveal little to no conformational changes upon comparison of the ligand-bound and unbound form. In this study, we take advantage of a recently identified prokaryote ion channel, SthK, which has functional properties that strongly resemble cyclic nucleotide-gated (CNG channels and is activated by cAMP, but not by cGMP. We determined X-ray crystal structures of the C-linker/CNBD of SthK in the presence of cAMP or cGMP. We observe that the structure in complex with cGMP, which is an antagonist, is similar to previously determined HCN channel structures. In contrast, the structure in complex with cAMP, which is an agonist, is in a more open conformation. We observe that the CNBD makes an outward swinging movement, which is accompanied by an opening of the C-linker. This conformation mirrors the open gate structures of the Kv1.2 channel or MthK channel, which suggests that the cAMP-bound C-linker/CNBD from SthK represents an activated conformation. These results provide a structural framework for better understanding cyclic nucleotide modulation of ion channels, including HCN and CNG channels.

  14. A Common Structural Component for β-Subunit Mediated Modulation of Slow Inactivation in Different KV Channels

    DEFF Research Database (Denmark)

    Strutz-Seebohm, Nathalie; Henrion, Ulrike; Schmitt, Nicole;

    2013-01-01

    inactivation by structurally dissimilar β-subunits in different KV channels. Conclusion: We propose a model in which structural changes accompanying activation and β-subunit modulation allosterically constrain the backbone carbonyl oxygen atoms via the side chain of the respective X-residue in the signature......Background/Aims: Potassium channels are tetrameric proteins providing potassium selective passage through lipid embedded proteinaceous pores with highest fidelity. The selectivity results from binding to discrete potassium binding sites and stabilization of a hydrated potassium ion in a central...... internal cavity. The four potassium binding sites, generated by the conserved TTxGYGD signature sequence are formed by the backbone carbonyls of the amino acids TXGYG. Residues KV1.5-Val481, KV4.3-Leu368 and KV7.1- Ile 313 represent the amino acids in the X position of the respective channels. Methods...

  15. Enhancement-Mode AlGaN/GaN High Electron Mobility Transistors Using a Nano-Channel Array Structure

    International Nuclear Information System (INIS)

    A nano-channel array (NCA) structure is applied to realize enhancement-mode (E-mode) AlGaN/GaN high-electron mobility transistors (HEMTs). The fabricated NCA-HEMT, consisting of 1000 channels connected in parallel with a channel width of 64 nm, shows a threshold voltage of 0.15 V and a subthreshold slope of 78 mV/dec, compared to −3.92 V and 99 mV/dec for a conventional HEMT (C-HEMT), respectively Both the NCA-HEMT and C-HEMT show similar gate leakage current, indicating no significant degradation in gate leakage characteristics for the NCA-HEMT. The surrounding-field effect and relieved polarization contribute to the very large positive threshold voltage shift, while the work function difference makes it positive. (condensed matter: electronic structure, electrical, magnetic, and optical properties)

  16. Impact of water temperature and structural parameters on the hydraulic labyrinth-channel emitter performance

    Directory of Open Access Journals (Sweden)

    Ahmed I. Al-Amoud

    2014-06-01

    Full Text Available The effects of water temperature and structural parameters of a labyrinth emitter on drip irrigation hydraulic performance were investigated. The inside structural parameters of the trapezoidal labyrinth emitter include path width (W and length (L, trapezoidal unit numbers (N, height (H, and spacing (S. Laboratory experiments were conducted using five different types of labyrinth-channel emitters (three non-pressure compensating and two pressure-compensating emitters commonly used for subsurface drip irrigation systems. The water temperature effect on the hydraulic characteristics at various operating pressures was recorded and a comparison was made to identify the most effective structural parameter on emitter performance. The pressure compensating emitter flow exponent (x average was 0.014, while non-pressure compensating emitter’s values average was 0.456, indicating that the sensitivity of non-pressure compensating emitters to pressure variation is an obvious characteristic (p<0.001 of this type of emitters. The effects of water temperature on emitter flow rate were insignificant (p>0.05 at various operating pressures, where the flow rate index values for emitters were around one. The effects of water temperature on manufacturer’s coefficient of variation (CV values for all emitters were insignificant (p>0.05. The CV values of the non-pressure compensating emitters were lower than those of pressure compensating emitters. This is typical for most compensating models because they are manufactured with more elements than non-compensating emitters are. The results of regression analysis indicate that N and H are the essential factors (p<0.001 to affect the hydraulic performance.

  17. Molecular Dynamics Simulation of the Antiamoebin Ion Channel: Linking Structure and Conductance

    Science.gov (United States)

    Wilson, Michael A.; Wei, Chenyu; Bjelkmar, Paer; Wallace, B. A.; Pohorille, Andrew

    2011-01-01

    Molecular dynamics simulations were carried out in order to ascertain which of the potential multimeric forms of the transmembrane peptaibol channel, antiamoebin, is consistant with its measured conductance. Estimates of the conductance obtained through counting ions that cross the channel and by solving the Nernst-Planck equation yield consistent results, indicating that the motion of ions inside the channel can be satisfactorily described as diffusive.The calculated conductance of octameric channels is markedly higher than the conductance measured in single channel recordings, whereas the tetramer appears to be non-conducting. The conductance of the hexamer was estimated to be 115+/-34 pS and 74+/-20 pS, at 150 mV and 75 mV, respectively, in satisfactory agreement with the value of 90 pS measured at 75 mV. On this basis we propose that the antiamoebin channel consists of six monomers. Its pore is large enough to accommodate K(+) and Cl(-) with their first solvation shells intact. The free energy barrier encountered by K(+) is only 2.2 kcal/mol whereas Cl(-) encounters a substantially higher barrier of nearly 5 kcal/mol. This difference makes the channel selective for cations. Ion crossing events are shown to be uncorrelated and follow Poisson statistics. keywords: ion channels, peptaibols, channel conductance, molecular dynamics

  18. Structural and functional characteristics of natural and constructed channels draining a reclaimed mountaintop removal and valley fill coal mine

    Science.gov (United States)

    Mountaintop removal and valley fill (MTR/VF) coal mining has altered the landscape of the Central Appalachian region in the United States. The goals of this study were to 1) compare the structure and function of natural and constructed stream channels in forested and MTR/VF catch...

  19. Progress in the structural understanding of voltage-gated calcium channel (CaV) function and modulation.

    Science.gov (United States)

    Minor, Daniel L; Findeisen, Felix

    2010-01-01

    Voltage-gated calcium channels (CaVs) are large, transmembrane multiprotein complexes that couple membrane depolarization to cellular calcium entry. These channels are central to cardiac action potential propagation, neurotransmitter and hormone release, muscle contraction, and calcium-dependent gene transcription. Over the past six years, the advent of high-resolution structural studies of CaV components from different isoforms and CaV modulators has begun to reveal the architecture that underlies the exceptionally rich feedback modulation that controls CaV action. These descriptions of CaV molecular anatomy have provided new, structure-based insights into the mechanisms by which particular channel elements affect voltage-dependent inactivation (VDI), calcium‑dependent inactivation (CDI), and calcium‑dependent facilitation (CDF). The initial successes have been achieved through structural studies of soluble channel domains and modulator proteins and have proven most powerful when paired with biochemical and functional studies that validate ideas inspired by the structures. Here, we review the progress in this growing area and highlight some key open challenges for future efforts. PMID:21139419

  20. Effect of Levee and Channel Structures on Long Lava Flow Emplacement: Martian Examples from THEMIS and MOLA Data

    Science.gov (United States)

    Peitersen, M. N.; Zimbelman, J. R.; Christensen, P. R.; Bare, C.

    2003-01-01

    Long lava flows (discrete flow units with lengths exceeding 50 km) are easily identified features found on many planetary surfaces. An ongoing investigation is being conducted into the origin of these flows. Here, we limit our attention to long lava flows which show evidence of channel-like structures.

  1. Atlantic 3800-meter radioactive waste disposal site survey (1978): sedimentary, micromorphologic and geophysical analyses. Final report. [Hudson Canyon channel

    Energy Technology Data Exchange (ETDEWEB)

    Hanselman, D.H.; Ryan, W.B.F.

    1983-06-01

    During the period of 22-28 July, 1978, five dives were made in the manned submersible ALVIN into the Atlantic Ocean 3800 meter depth radioactive waste disposal site located in the Hudson Canyon channel approximately 320 kilometers from the Maryland-Delaware coast. A geological description of the site was made by direct examination of the bottom topography, bedrock exposures, sedimentary and erosional processes, and sediment cores collected from the dumpsite area. Observations within a depth range of 3985-3830 meters revealed angular blocks and piles of displaced channel wall rock, boulder and cobble olistoliths of Eocene-age chalks derived from higher elevations on the slope, and bedforms such as ripples and scour marks which imply the existence of periodic strong currents. Local benthic fauna were sparse. Three low-level radioactive waste drums were examined from the submersible, and one was subsequently recovered for corrosion, and concrete deterioration analyses. Photographic and visual evidence suggest that downslope transport of objects such as talus blocks, olistoliths, and radioactive waste drums has occurred in this area.

  2. Towards an understanding of the structural and functional properties of MscL, a mechanosensitive channel in bacteria

    Science.gov (United States)

    Blount, P.; Sukharev, S. I.; Moe, P. C.; Nagle, S. K.; Kung, C.

    1996-01-01

    Whether it be to sense a touch, arterial pressure, or an osmotic gradient across a cell membrane, essentially all living organisms require the capability of detecting mechanical force. Electrophysiological evidence has suggested that mechanosensitive ion channels play a major role in many systems where mechanical force is detected. But, despite their biological importance, determination of the most basic structural and functional features of mechanosensitive channels has only recently become possible. A gene called mscL, which was isolated from Escherichia coli, was the first gene shown to encode a mechanosensitive channel activity. This channel directly responds to tension in the membrane; no other proteins are required. MscL appears to be a homohexamer of a 136 amino acid polypeptide that is highly alpha helical, contains two transmembrane domains, and has both the amino and carboxyl termini in the cytoplasm. The study of the MscL protein remains, to date, one of the most viable options for understanding the structural and functional characteristics of a mechanosensitive channel.

  3. On the formation of coherent structures in narrow gaps of complex channels. A linear stability analysis

    International Nuclear Information System (INIS)

    In this study, a linear stability analysis is performed in an attempt to explain the formation of the coherent structures in the narrow flow regions of complex channel flows consisting of relatively large subchannels parallel to neighbouring narrower sections. This stability analysis employs computed velocity profiles at the middle of the gaps. It introduces small amplitude perturbations of the velocity and the pressure fields and linearizes the equations of motion. A normal mode assumption is made and a search for conditions such that these specific solutions exist is done. The linearized equations are transformed into an eigenvalue problem that is solved using the spectral Tau-Chebyshev collocation method. The critical Reynolds number Rec is obtained from the thresholds for which an eigenvalue has a real part equal to zero whereas all the other eigenvalues have negative real parts. The stability analysis gave variations of the critical Reynolds number with gap size that are in qualitative agreement with published experimental stability investigations. The iso-contours of the streamwise and transverse velocities, obtained from the preferred modes solution, confirmed the presence in the gap region of counter-rotating vortices, the origin of which is the flow instability resulting from the particular velocity profile in the middle of the gap. (author)

  4. Tree-Structure Expectation Propagation for LDPC Decoding in Erasure Channels

    CERN Document Server

    Olmos, Pablo M; Pérez-Cruz, Fernando

    2010-01-01

    In this paper we present a new algorithm, denoted as TEP, to decode low-density parity-check (LDPC) codes over the Binary Erasure Channel (BEC). The TEP decoder is derived applying the expectation propagation (EP) algorithm with a tree- structured approximation. Expectation Propagation (EP) is a generalization to Belief Propagation (BP) in two ways. First, it can be used with any exponential family distribution over the cliques in the graph. Second, it can impose additional constraints on the marginal distributions. We use this second property to impose pair-wise marginal constraints in some check nodes of the LDPC code's Tanner graph. The algorithm has the same computational complexity than BP, but it can decode a higher fraction of errors when applied over the BEC. In this paper, we focus on the asymptotic performance of the TEP decoder, as the block size tends to infinity. We describe the TEP decoder by a set of differential equations that represents the residual graph evolution during the decoding process...

  5. Polarity determination of epitaxial structures of CdTe on GaAs by channeling techniques

    Energy Technology Data Exchange (ETDEWEB)

    Wielunski, L.S. (CSIRO Div. of Applied Physics, Lucas Heights Research Labs., Menai, NSW (Australia)); Kwietniak, M.S.; Pain, G.N. (Telecom Australia Research Labs., Clayton, Victoria (Australia)); Rossouw, C.J. (CSIRO Div. of Materials Science and Tech., Clayton, Victoria (Australia))

    1990-01-01

    RBS spectra analysis near the (111) planar channeling direction is used for polarity determination of MOCVD-grown epitaxial layers of (111) and (100) CdTe on sapphire and GaAs substrates. Extensive multiple twinning limits the application of RBS channeling analysis for polarity determination. Comparison is made with polarity determination by X-ray diffraction and two electron diffraction techniques. (orig.).

  6. On the influence of outer large-scale structures on near-wall turbulence in channel flow

    Science.gov (United States)

    Agostini, L.; Leschziner, M. A.

    2014-07-01

    Direct Numerical Simulation (DNS) data for channel flow at 1025 are used to analyse the interaction between large outer scales in the log-law region - referred to as super-streaks - and the small-scale, streaky, streamwise-velocity fluctuations in the viscosity-affected near-wall layer. The study is inspired by extensive experimental investigations by Mathis, Marusic, and Hutchins, culminating in a predictive model that describes, in a supposedly universal manner, the "footprinting" and "modulating" effects of the outer structures on the small-scale near-wall motions. The approach used herein is based on the examination of joint PDFs for the small-scale fluctuations, conditioned on regions of large-scale footprints. The large and small scales are separated by means of the Huang-Hilbert empirical-mode decomposition, the validity of which is demonstrated by way of pre-multiplied energy spectra, correlation maps, and energy profiles for both scales. Observations derived from the PDFs then form the basis of assessing the validity of the assumptions underlying the model. Although the present observations support some elements of the model, the results imply that modulation by negative and positive large-scale fluctuations differ greatly - an asymmetric response that is not compatible with the model. The study is thus extended to examining the validity of an alternative proposal, which is based on the assumption that a universal description of the small-scale response to the large-scale motions has to rely on the velocity fluctuations being scaled with the large-scales-modified local friction velocity, rather than with the mean value. This proposal is partially supported by the present analysis. Finally, an alternative, new phenomenological model is proposed and examined.

  7. Rectified motion in an asymmetrically structured channel due to induced-charge electrokinetic and thermo-kinetic phenomena

    Energy Technology Data Exchange (ETDEWEB)

    Sugioka, Hideyuki, E-mail: hsugioka@shinshu-u.ac.jp [Frontier Research Center, Canon Inc. 30-2, Shimomaruko 3-chome, Ohta-ku, Tokyo 146-8501, Japan and Department of Mechanical Systems Engineering, Shinshu University 4-17-1 Wakasato, Nagano 380-8553 (Japan)

    2016-02-15

    It would be advantageous to move fluid by the gradient of random thermal noises that are omnipresent in the natural world. To achieve this motion, we propose a rectifier that uses a thermal noise along with induced-charge electroosmosis and electrophoresis (ICEO and ICEP) around a metal post cylinder in an asymmetrically structured channel and numerically examine its rectification performance. By the boundary element method combined with the thin double layer approximation, we find that rectified motion occurs in the asymmetrically structured channel due to ICEO and ICEP. Further, by thermodynamical and equivalent circuit methods, we discuss a thermal voltage that drives a rectifier consisting of a fluidic channel of an electrolyte and an impedance as a noise source. Our calculations show that fluid can be moved in the asymmetrically structured channel by the fluctuation of electric fields due to a thermal noise only when there is a temperature difference. In addition, our simple noise argument provides a different perspective for the thermo-kinetic phenomena (around a metal post) which was predicted based on the electrolyte Seebeck effect in our previous paper [H. Sugioka, “Nonlinear thermokinetic phenomena due to the Seebeck effect,” Langmuir 30, 8621 (2014)].

  8. Overview of LEI investigations on heat transfer and flow structure in gas-cooled spheres packings and channels

    International Nuclear Information System (INIS)

    In this paper experimental investigations on heat transfer and hydrodynamics in various gas-cooled channels over wide ranges of geometrical and performance parameters performed at Lithuanian Energy Institute are presented. Overview introduces long-term experience on investigations of local and average heat transfer, hydraulic drag in various types of sphere packings, in smooth, helical tubes and annular channels equipped with smooth/rough or helical inner lubes, such bundle of twisted tubes, as well as turbulent flow structure and the effects of variable physical properties of gas heat carriers on local heat transfer in channels of different cross sections. Lithuanian Energy Institute has accumulated long term experience in the field of heat transfer investigations and has good experimental basis for providing such studies and following analytical analysis. (author)

  9. Enhancement-Mode AIGaN/GaN High Electron Mobility Transistors Using a Nano-Channel Arrayy Structure

    Institute of Scientific and Technical Information of China (English)

    LIU Sheng-Hou; Cheng P. Wen; QIN Hua; ZHANG Bao-Shun; CAI Yong; GONG Ru-Min; WANG Jin-Yan; ZENG Chun-Hong; SHI Wen-Hua; FENG Zhi-Hong; WANG Jing-Jing; YIN Jia-Yun

    2011-01-01

    A nano-channel array (NCA) structure is applied to realize enhancement-mode (E-mode) A1GaN/GaN high electron mobility transistors (HEMTs). The fabricated NCA-HEMT,consisting of 1000 channels connected in parallel with a channel width of 64 nm,shows a threshold voltage of 0.15 V and a subthreshold slope of 78mY/dec,compared to -3.92 V and 99mV/dec for a conventional HEMT (C-HEMT),respectively.Both the NCA-HEMT and C-HEMT show similar gate leakage current,indicating no significant degradation in gate leakage characteristics for the NCA-HEMT.The surrounding-field effect and relieved polarization contribute to the very large positive threshold voltage shift,while the work function difference makes it positive.

  10. Structure and selectivity of novel ω-conotoxins and conus catus that target neuronal calcium channel subtypes

    International Nuclear Information System (INIS)

    Full text: ω-Conotoxins selective for N-type voltage-sensitive calcium channels have promising therapeutic applications in conditions such as pain and neurodegeneration following cerebral ischaemia. Here we report the discovery of novel conotoxins from the piscivorous snail Conus carus using 125I-GVIA binding to rat brain membrane to guide fractionation of crude venom, and cloning to identify the expressed gene products from the venom duct tissue. Four peptides were isolated and named ω-conotoxins CVIA-D (CVIA-D) on the basis of their pharmacology and structure. CVIA-D had varying extents of homology to other ω-conotoxins, with loop 4 of CVID showing significant sequence divergence. From binding studies in rat brain, the rank order of potency to displace 125I-GVIA from N-type calcium channel (CVID = GVIA=MVIIA > CVIA > CVIC = CVIB > MVIIC) was reversed at the P/Q-type calcium channel (defined by 125I-MVIIC). CVID was most selective for N-type vs P/Q-type calcium channels, being 1.5 to 2-orders of magnitude more selective than GVIA and MVIIA, respectively. CVIA-D each inhibited neurally-evoked contractions in rat vas deferens in a reversible manner, with potencies that correlated with their ability to inhibit 125I-GVIA binding. Compared with GVIA, CVID was a more potent inhibitor of central N-type calcium channels (α1,B-dexpressed in Xenopus oocytes) than of peripheral N-type calcium channels (rat vas deferens). 1H NMR studies revealed that CVID adopts a similar 3D fold to other ω-conotoxins. However, in contrast to GVIA, MVIIA or MVIIC, CVID has two hydrogen bonds that hold loops 2 and 4 proximal, a factor that may contribute to the enhanced ability of CVID to discriminate among neuronal calcium channels

  11. Bis-quaternary ammonium blockers as structural probes of the sarcoplasmic reticulum K+ channel

    OpenAIRE

    1982-01-01

    A series of n-alkyl-bis-alpha,omega-trimethylammonium (bisQn) compounds was synthesized, and their ability to block K+ currents through a K+ channel from sarcoplasmic reticulum was studied. K+ channels were inserted into planar phospholipid membranes, and single-channel K+ currents were measured in the presence of the blocking cations. These bisQn compounds block K+ currents only from the side of the membrane opposite to the addition of SR vesicles (the trans side). The block is dependent on ...

  12. Charge structure of the hadronic final state in deep-inelastic muon-nucleon scattering

    Science.gov (United States)

    Arneodo, M.; Arvidson, A.; Aubert, J. J.; Bedełek, J.; Beaufays, J.; Bee, C. P.; Benchouk, C.; Berghoff, G.; Bird, I.; Blum, D.; Böhm, E.; de Bouard, X.; Brasse, F. W.; Braun, H.; Broll, C.; Brown, S.; Brück, H.; Calen, H.; Chima, J. S.; Ciborowski, J.; Clifft, R.; Coignet, G.; Combley, F.; Coughlan, J.; D'Agostini, G.; Dahlgren, S.; Dengler, F.; Derado, I.; Dreyer, T.; Drees, J.; Düren, M.; Eckardt, V.; Edwards, A.; Edwards, M.; Ernst, T.; Eszes, G.; Favier, J.; Ferrero, M. I.; Figiel, J.; Flauger, W.; Foster, J.; Ftáčnik, J.; Gabathuler, E.; Gajewski, J.; Gamet, R.; Gayler, J.; Geddes, N.; Grafström, P.; Grard, F.; Haas, J.; Hagberg, E.; Hasert, F. J.; Hayman, P.; Heusse, P.; Jaffré, M.; Jachołkowska, A.; Janata, F.; Jancsó, G.; Johnson, A. S.; Kabuss, E. M.; Kellner, G.; Korbel, V.; Krüger, J.; Kullander, S.; Landgraf, U.; Lanske, D.; Loken, J.; Long, K.; Maire, M.; Malecki, P.; Manz, A.; Maselli, S.; Mohr, W.; Montanet, F.; Montgomery, H. E.; Nagy, E.; Nassalski, J.; Norton, P. R.; Oakham, F. G.; Osborne, A. M.; Pascaud, C.; Pawlik, B.; Payre, P.; Peroni, C.; Peschel, H.; Pessard, H.; Pettinghale, J.; Pietrzyk, B.; Pietrzyk, U.; Pönsgen, B.; Pötsch, M.; Renton, P.; Ribarics, P.; Rith, K.; Rondio, E.; Sandacz, A.; Scheer, M.; Schlagböhmer, A.; Schiemann, H.; Schmitz, N.; Schneegans, M.; Schneider, A.; Scholz, M.; Schröder, T.; Schultze, K.; Sloan, T.; Stier, H. E.; Studt, M.; Taylor, G. N.; Thénard, J. M.; Thompson, J. C.; de La Torre, A.; Toth, J.; Urban, L.; Wallucks, W.; Whalley, M.; Wheeler, S.; Williams, W. S. C.; Wimpenny, S. J.; Windmolders, R.; Wolf, G.

    1988-09-01

    The general charge properties of the hadronic final state produced in μ + p and μ + d interactions at 280 GeV are investigated. Quark charge retention and local charge compensation is observed. The ratio F {2/ n }/ F {2/ p } of the neutron to proton structure function is derived from the measurement of the average hadronic charge in μ d interactions.

  13. Ultraviolet-enhanced photodetection in a graphene/SiO{sub 2}/Si capacitor structure with a vacuum channel

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Myungji; Kim, Hong Koo, E-mail: hkk@pitt.edu [Department of Electrical and Computer Engineering and Petersen Institute of NanoScience and Engineering, University of Pittsburgh, Pittsburgh, Pennsylvania 15261 (United States)

    2015-09-14

    We report photodetection properties of a graphene/oxide/silicon capacitor structure with a nanoscale vacuum channel. The photogenerated two-dimensional electron gas (2DEG) inversion charges at SiO{sub 2}/Si interface are extracted out to air and transported along the void channel at low bias voltage (<5 V). A monolayer graphene, placed on top of SiO{sub 2} and suspended on the void channel, is utilized as a photon-transparent counter-electrode to the 2DEG layer and a collector electrode for the out-of-plane transported electrons, respectively. The photocurrent extracted through a void channel reveals high responsivity (1.0 A/W at 633 nm) as measured in a broad spectral range (325–1064 nm), especially demonstrating a UV-enhanced performance (0.43 A/W responsivity and 384% internal quantum efficiency at 325 nm). The mechanisms underlying photocarrier generation, emission, and transport in a suspended-graphene/SiO{sub 2}/Si structure are proposed.

  14. Effect of Functional Nano Channel Structures Different Widths on Injection Molding and Compression Molding Replication Capabilities

    DEFF Research Database (Denmark)

    Calaon, M.; Tosello, G.; Garnaes, J.;

    The present study investigates the capabilities of the two employed processes, injection molding (IM) and injection compression molding (ICM) on replicating different channel cross sections. Statistical design of experiment was adopted to optimize replication quality of produced polymer parts wit...

  15. Intrinsic properties of channel network structure and the hierarchical classification approach for stream-limits delineation

    International Nuclear Information System (INIS)

    Delineation of drainage networks is an essential task in hydrological and geomorphologic analysis. Manual channel definition depends on topographic contrast and is highly subjective, leading to important errors at high resolutions. different automatic methods have proposed the use of a constant threshold of up sole contributing are to define channel initiation. Actually, these are the most commonly used for the automatic-channel network extraction from Digital Models (DEMs). However, these methods fall to detect and appropriate threshold when the basin is made up to heterogeneous sub-zones, as they only work either lumped or locally. In this study, the critical threshold area for channel delineation has been defined through the analysis of dominant geometric and topologic properties of stream network formation. (Author) 5 refs.

  16. Structural implications of mutations in the pea SYM8 symbiosis gene, the DMI1 ortholog, encoding a predicted ion channel.

    Science.gov (United States)

    Edwards, Anne; Heckmann, Anne B; Yousafzai, Faridoon; Duc, Gerard; Downie, J Allan

    2007-10-01

    The Pisum sativum SYM8 gene plays an essential part in both rhizobial and mycorrhizal symbioses. Mutation of sym8 in the original type line R25 blocks nodulation, mycorrhization, and Nod-factor-induced calcium spiking, an early component of the nodulation signaling pathway. We describe four new sym8 alleles of pea, which fall into the same complementation group as R25. The sym8 mutants are phenotypically similar to Medicago truncatula dmi1 mutants and map to a syntenic location. We used sequence homology to isolate the pea ortholog of M. truncatula DMI1 and have shown that the cloned pea ortholog can complement a M. truncatula dmi1 mutant for nodulation. Each of the five pea sym8 mutants carries a mutation in the DMI1 ortholog, confirming that the pea SYM8 is the DMI1 ortholog. Based on predicted structural similarities with an archaebacterial ion channel, we propose that SYM8 forms a tetrameric calcium-gated channel of a predicted structure similar to the archaebacterial potassium channel but containing a filter region that is different. The predicted structure identifies four aspartate residues (one from each subunit) forming the channel opening. We made a mutation changing the aspartate to valine and identified a missense mutation (changing alanine to valine adjacent to the aspartate residues) in this predicted filter region; both mutations caused a loss of function. We also identified a loss-of-function missense mutation (changing arginine to isoleucine) in a domain proposed to link the predicted channel and the gating ring domains, indicating that this mutation may block function by preventing a protein conformational change being transmitted from the gating-ring domain to the pore domain. PMID:17918620

  17. Potassium Channel, Ions, and Water: Simulation Studies Based on the High Resolution X-Ray Structure of KcsA

    OpenAIRE

    Domene, Carmen; Sansom, Mark S P

    2003-01-01

    Interactions of Na+, K+, Rb+, and Cs+ ions within the selectivity filter of a potassium channel have been investigated via multiple molecular dynamics simulations (total simulation time, 48 ns) based on the high resolution structure of KcsA, embedded in a phospholipid bilayer. As in simulations based on a lower resolution structure of KcsA, concerted motions of ions and water within the filter are seen. Despite the use of a higher resolution structure and the inclusion of four buried water mo...

  18. Protein structure and ionic selectivity in calcium channels: Selectivity filter size, not shape, matters

    OpenAIRE

    Malasics, Attila; Gillespie, Dirk; Nonner, Wolfgang; Henderson, Douglas; Eisenberg, Bob; Boda, Dezső

    2009-01-01

    Calcium channels have highly charged selectivity filters (4 COO− groups) that attract cations in to balance this charge and minimize free energy, forcing the cations (Na+ and Ca2+) to compete for space in the filter. A reduced model was developed to better understand the mechanism of ion selectivity in calcium channels. The charge/space competition (CSC) mechanism implies that Ca2+ is more efficient in balancing the charge of the filter because it provides twice the charge as Na+ while occupy...

  19. Contrasted structuring effects of mesoscale features on the seabird community in the Mozambique Channel

    OpenAIRE

    Jaquemet, Sébastien; Ternon, Jean-François; Kaehler, S; Thiebot, J. B.; Dyer, B.; Bemanaja, E.; Marteau, C.; Le Corre, M.

    2014-01-01

    The Mozambique Channel (western Indian Ocean) is a dynamic environment characterised by strong mesoscale features, which influence all biological components of the pelagic ecosystem. We investigated the distribution, abundance and feeding behaviour of seabirds in the Mozambique Channel in relation to physical and biological environmental variables, with a specific interest in mesoscale features. Seabird censuses were conducted in summer and winter during 7 cruises in the southern and northern...

  20. Biomimetic heterogeneous multiple ion channels: a honeycomb structure composite film generated by breath figures.

    Science.gov (United States)

    Han, Keyu; Heng, Liping; Wen, Liping; Jiang, Lei

    2016-06-16

    We design a novel type of artificial multiple nanochannel system with remarkable ion rectification behavior via a facile breath figure (BF) method. Notably, even though the charge polarity in the channel wall reverses under different pH values, this nanofluidic device displays the same ionic rectification direction. Compared with traditional nanochannels, this composite multiple ion channel device can be more easily obtained and has directional ionic rectification advantages, which can be applied in many fields. PMID:27270836

  1. Crystal structure of the CaV2 IQ domain in complex with Ca2+/calmodulin: High-resolution mechanistic implications for channel regulation by Ca2+

    OpenAIRE

    Mori, Masayuki X.; Vander Kooi, Craig W.; Leahy, Daniel J.; Yue, David T.

    2008-01-01

    Calmodulin (CaM) regulation of Ca2+ channels is central to Ca2+ signaling. CaV1 versus CaV2 classes of these channels exhibit divergent forms of regulation, potentially relating to customized CaM/IQ interactions among different channels. Here, we report the crystal structures for the Ca2+/CaM—IQ domains of both CaV2.1 and CaV2.3 channels. These highly similar structures emphasize that major CaM contacts with the IQ domain extend well upstream of traditional consensus residues. Surprisingly, u...

  2. Structural and mechanical properties of EN AW 6082 aluminum alloy produced by equal-channel angular pressing

    OpenAIRE

    Greger, Miroslav; Madaj, Michal; Žáček, David

    2014-01-01

    At the VSB-TU Ostrava a piece of equipment was installed for verifying the equal-channel-angular-pressing (ECAP) technology, used for investigating the effect of deformation on the evolution of the structure and mechanical properties of alloy EN AW 6082. This alloy was subjected to ECAP consisting of four passes. During the pressing deformation forces were measured and the pressure in the die was calculated. Higher values of strain hardening were found and a higher pressure was me...

  3. Equal channel angular pressing technique for the formation of ultra-fine grained structures

    Directory of Open Access Journals (Sweden)

    Kazeem O. Sanusi

    2012-10-01

    Full Text Available Equal channel angular pressing is one of the techniques in metal forming processes in which an ultra-large plastic strain is imposed on a bulk material in order to make ultra-fine grained and nanocrystalline metals and alloys. The technique is a viable forming procedure to extrude materials by use of specially designed channel dies without substantially changing the geometry by imposing severe plastic deformation. This technique has the potential for high strain rate superplasticity by effective grain refinement to the level of the submicron-scale or nanoscale. Wereview recent work on new trends in equal channel angular pressing techniques and the manufacturing of die-sets used for the processing of metals and alloys. We also experimented on a copper alloy using the equal channel angular pressing technique to examine the microstructural, mechanical and hardness properties of the ultra-fine grained and nanocrystalline materials produced. After deformation, all samples were subjected to a hardness test and the results showed improved mechanical behaviour of the ultra-fine grained copper alloy that was developed. This research provides an opportunity to examine the significance of the equal channel angular pressing process for metals and alloys. That is, these ultra-fine grained materials can be used in the manufacturing of semi-finished products used in the power, aerospace, medical and automotive industries.

  4. Smart Intelligent Aircraft Structures (SARISTU) : Proceedings of the Final Project Conference

    CERN Document Server

    Papadopoulos, Michael

    2016-01-01

    The book includes the research papers presented in the final conference of the EU funded SARISTU (Smart Intelligent Aircraft Structures) project, held at Moscow, Russia between 19-21 of May 2015. The SARISTU project, which was launched in September 2011, developed and tested a variety of individual applications as well as their combinations. With a strong focus on actual physical integration and subsequent material and structural testing, SARISTU has been responsible for important progress on the route to industrialization of structure integrated functionalities such as Conformal Morphing, Structural Health Monitoring and Nanocomposites. The gap- and edge-free deformation of aerodynamic surfaces known as conformal morphing has gained previously unrealized capabilities such as inherent de-icing, erosion protection and lightning strike protection, while at the same time the technological risk has been greatly reduced. Individual structural health monitoring techniques can now be applied at the part-manufacturin...

  5. Dual curved photonic crystal ring resonator based channel drop filter using two-dimensional photonic crystal structure

    Science.gov (United States)

    Chhipa, Mayur Kumar; Dusad, Lalit Kumar

    2016-05-01

    In this paper channel drop filter (CDF) is designed using dual curved photonic crystal ring resonator (PCRR). The photonic band gap (PBG) is calculated by plane wave expansion (PWE) method and the photonic crystal (PhC) based on two dimensional (2D) square lattice periodic arrays of silicon (Si) rods in air structure have been investigated using finite difference time domain (FDTD) method. The number of rods in Z and X directions is 21 and 20 respectively with lattice constant 0.540 nm and rod radius r = 0.1 µm. The channel drop filter has been optimized for telecommunication wavelengths λ = 1.591 µm with refractive indices 3.533. In the designed structure further analysis is also done by changing whole rods refractive index and it has been observed that this filter may be used for filtering several other channels also. The designed structure is useful for CWDM systems. This device may serve as a key component in photonic integrated circuits. The device is ultra compact with the overall size around 123 µm2.

  6. Full equations utilities (FEQUTL) model for the approximation of hydraulic characteristics of open channels and control structures during unsteady flow

    Science.gov (United States)

    Franz, Delbert D.; Melching, Charles S.

    1997-01-01

    The Full EQuations UTiLities (FEQUTL) model is a computer program for computation of tables that list the hydraulic characteristics of open channels and control structures as a function of upstream and downstream depths; these tables facilitate the simulation of unsteady flow in a stream system with the Full Equations (FEQ) model. Simulation of unsteady flow requires many iterations for each time period computed. Thus, computation of hydraulic characteristics during the simulations is impractical, and preparation of function tables and application of table look-up procedures facilitates simulation of unsteady flow. Three general types of function tables are computed: one-dimensional tables that relate hydraulic characteristics to upstream flow depth, two-dimensional tables that relate flow through control structures to upstream and downstream flow depth, and three-dimensional tables that relate flow through gated structures to upstream and downstream flow depth and gate setting. For open-channel reaches, six types of one-dimensional function tables contain different combinations of the top width of flow, area, first moment of area with respect to the water surface, conveyance, flux coefficients, and correction coefficients for channel curvilinearity. For hydraulic control structures, one type of one-dimensional function table contains relations between flow and upstream depth, and two types of two-dimensional function tables contain relations among flow and upstream and downstream flow depths. For hydraulic control structures with gates, a three-dimensional function table lists the system of two-dimensional tables that contain the relations among flow and upstream and downstream flow depths that correspond to different gate openings. Hydraulic control structures for which function tables containing flow relations are prepared in FEQUTL include expansions, contractions, bridges, culverts, embankments, weirs, closed conduits (circular, rectangular, and pipe

  7. On The Structural Basis of Modal Gating Behavior in K+ Channels

    OpenAIRE

    Chakrapani, Sudha; Cordero-Morales, Julio F.; Jogini, Vishwanath; Pan, Albert C.; Cortes, D. Marien; Roux, Benoît; Perozo, Eduardo

    2010-01-01

    Modal-gating shifts represent an effective regulatory mechanism by which ion channels control the extent and time course of ionic fluxes. Under steady-state conditions, the K+ channel KcsA displays three distinct gating modes, high-Po , low-Po and a high-frequency flicker mode, each with about an order of magnitude difference in their mean open times. Here, we show that in the absence of C-type inactivation, mutations at the pore-helix position Glu71 unmask a series of kinetically distinct mo...

  8. The influence of initial powder properties on the mechanical alloying process and the final powders structure

    OpenAIRE

    Szymczak, M.; R. Nowosielski; W. Pilarczyk

    2011-01-01

    Purpose: The main aim of this work is to study the influence of initial powder properties on the mechanical alloying process and final powders structure and the production of chosen powder alloy by mechanical alloying method.Design/methodology/approach: The test material was the pure niobium, tin and copper powders. The powders were ground for 2 and 10 hrs. The mechanical alloying process was conducted in a high energy SPEX mill under inert argon atmosphere. The chemical constitution and conc...

  9. Charge structure of the hadronic final state in deep-inelastic muon-nucleon scattering

    International Nuclear Information System (INIS)

    The general charge properties of the hadronic final state produced in μ+p and μ+d interactions at 280 GeV are investigated. Quark charge retention and local charge compensation is observed. The ratio F2n/F2p of the neutron to proton structure function is derived from the measurement of the average hadronic charge in μd interactions. (orig.)

  10. Properties and Formation of the Structure of Bi2Se0.3Te2.7 Solid Solutions Produced by Equal-Channel Angular Pressing

    Science.gov (United States)

    Bogomolov, D. I.; Bublik, V. T.; Tabachkova, N. YU.; Tarasova, I. V.

    2016-01-01

    This paper reports an x-ray diffraction, scanning and transmission electron microscopy study of regularities in the formation of defect structures in thermoelectric materials at different stages of plastic flow during equal-channel angular pressing in a three-channel configuration. We show that this deformation setup produces a homogeneous fine-grain structure with a preferential texture in which grain cleavage planes arrange along the extrusion axis. These studies of the structure and properties of thermoelectric materials were used to choose the optimum temperature for equal-channel angular pressing corresponding to lower pre-recrystallization temperatures.

  11. RBS/channelling study of Er+ ion-implanted lithium niobate structure after an annealing procedure

    Czech Academy of Sciences Publication Activity Database

    Macková, Anna; Malinský, Petr; Švecová, B.; Nekvindová, P.; Grotzschel, R.

    Cambridge: IOP, Institute of physics, 2009. [19th International conference on Ion beam analysis . 07.09.2009-11.09.2009, Cambridge] R&D Projects: GA MŠk(CZ) LC06041 Institutional research plan: CEZ:AV0Z10480505 Keywords : Lithium niobate * Erbium * Ion implantation * RBS/channelling Subject RIV: BG - Nuclear, Atomic and Molecular Physics, Colliders

  12. Coupled-channels calculations of nonelastic cross sections using a density-functional structure model

    CERN Document Server

    Nobre, G P A; Escher, J E; Thompson, I J; Dupuis, M; Terasaki, J; Engel, J

    2010-01-01

    A microscopic calculation of the reaction cross-section for nucleon-nucleus scattering has been performed by explicitly coupling the elastic channel to all particle-hole (p-h) excitation states in the target and to all one-nucleon pickup channels. The p-h states may be regarded as doorway states through which the flux flows to more complicated configurations, and subsequently to long-lived compound nucleus resonances. Target excitations for 40,48Ca, 58Ni, 90Zr and 144Sm were described in a QRPA framework using a Skyrme functional. Reaction cross sections calculated in this approach were compared to predictions of a fitted optical potential and to experimental data, reaching very good agreement. Couplings between inelastic states were found to be negligible, while the couplings to pickup channels contribute significantly. For the first time observed reaction cross-sections are completely accounted for by explicit channel coupling, for incident energies between 10 and 40 MeV.

  13. Wetting and dewetting of narrow hydrophobic channels by orthogonal electric fields: Structure, free energy, and dynamics for different water models

    Science.gov (United States)

    Kayal, Abhijit; Chandra, Amalendu

    2015-12-01

    Wetting and dewetting of a (6,6) carbon nanotube in presence of an orthogonal electric field of varying strengths are studied by means of molecular dynamics simulations using seven different models of water. We have looked at filling of the channel, occupancy and structure of water inside it, associated free energy profiles, and also dynamical properties like the time scales of collective dipole flipping and residence dynamics. For the current systems where the entire simulation box is under the electric field, the nanotube is found to undergo electrodrying, i.e., transition from filled to empty states on increase of the electric field. The free energy calculations show that the empty state is the most stable one at higher electric field as it raptures the hydrogen bond environment inside the carbon nanotube by reorienting water molecules to its direction leading to a depletion of water molecules inside the channel. We investigated the collective flipping of water dipoles inside the channel and found that it follows a fast stepwise mechanism. On the dynamical side, the dipole flipping is found to occur at a faster rate with increase of the electric field. Also, the rate of water flow is found to decrease dramatically as the field strength is increased. The residence time of water molecules inside the channel is also found to decrease with increasing electric field. Although the effects of electric field on different water models are found to be qualitatively similar, the quantitative details can be different for different models. In particular, the dynamics of water molecules inside the channel can vary significantly for different water models. However, the general behavior of wetting and dewetting transitions, enhanced dipole flips, and shorter residence times on application of an orthogonal electric field hold true for all water models considered in the current work.

  14. A Common Structural Component for β-Subunit Mediated Modulation of Slow Inactivation in Different KV Channels

    Directory of Open Access Journals (Sweden)

    Nathalie Strutz-Seebohm

    2013-06-01

    Full Text Available Background/Aims: Potassium channels are tetrameric proteins providing potassium selective passage through lipid embedded proteinaceous pores with highest fidelity. The selectivity results from binding to discrete potassium binding sites and stabilization of a hydrated potassium ion in a central internal cavity. The four potassium binding sites, generated by the conserved TTxGYGD signature sequence are formed by the backbone carbonyls of the amino acids TXGYG. Residues KV1.5-Val481, KV4.3-Leu368 and KV7.1- Ile 313 represent the amino acids in the X position of the respective channels. Methods: Here, we study the impact of these residues on ion selectivity, permeation and inactivation kinetics as well as the modulation by β-subunits using site-specific mutagenesis, electrophysiological analyses and molecular dynamics simulations. Results: We identify this position as key in modulation of slow inactivation by structurally dissimilar β-subunits in different KV channels. Conclusion: We propose a model in which structural changes accompanying activation and β-subunit modulation allosterically constrain the backbone carbonyl oxygen atoms via the side chain of the respective X-residue in the signature sequence to reduce conductance during slow inactivation.

  15. Effectiveness Using Circular Fibre Steel Flap Gate As a Control Structure Towards the Hydraulic Characteristics in Open Channel

    Science.gov (United States)

    Adib, M. R. M.; Amirza, A. R. M.; Wardah, T.; Junaidah, A.

    2016-07-01

    Hydraulic control gate structure plays an important role in regulating the flow of water in river, canal or water reservoir. One of the most appropriate structures in term of resolving the problem of flood occured is the construction of circular fibre steel flap gate. Therefore, an experiment has been conducted by using an open channel model at laboratory. In this case, hydraulic jump and backwater were the method to determined the hydraulic characteristics of circular fibre steel flap gate in an open channel model. From the experiment, the opening angle of flap gate can receive discharges with the highest flow rate of 0.035 m3/s with opening angle was 47°. The type of jump that occurs at the slope of 1/200 for a distance of 5.0 m is a standing jump or undulating wave. The height of the backwater can be identified based on the differences of specific force which is specific force before jump, F1 and specific force after jump, F2 from the formation of backwater. Based on the research conducted, the tendency of incident backwater wave occurred was high in every distance of water control location from water inlet is flap slope and the slope of 1/300 which is 0.84 m/s and 0.75 m/s of celerity in open channel model.

  16. 2D Four-Channel Perfect Reconstruction Filter Bank Realized with the 2D Lattice Filter Structure

    Directory of Open Access Journals (Sweden)

    Sezen S

    2006-01-01

    Full Text Available A novel orthogonal 2D lattice structure is incorporated into the design of a nonseparable 2D four-channel perfect reconstruction filter bank. The proposed filter bank is obtained by using the polyphase decomposition technique which requires the design of an orthogonal 2D lattice filter. Due to constraint of perfect reconstruction, each stage of this lattice filter bank is simply parameterized by two coefficients. The perfect reconstruction property is satisfied regardless of the actual values of these parameters and of the number of the lattice stages. It is also shown that a separable 2D four-channel perfect reconstruction lattice filter bank can be constructed from the 1D lattice filter and that this is a special case of the proposed 2D lattice filter bank under certain conditions. The perfect reconstruction property of the proposed 2D lattice filter approach is verified by computer simulations.

  17. Experimental investigation of the input section structure elements of the paste-cooled channel of a reusable pulsed MHD generator

    International Nuclear Information System (INIS)

    The results of experimental study on thermal stability of the input section structure elements of the paste-cooled channel of the MHD multi-action pulse generator are presented. The test rocket fuel engine with addition of powder-like aluminium was used as a gas generator. The engine nozzle with a critical cross section of a rectangular shape is accomplished from upper paste-cooled walls. Two paste-coolants: the melting one on the basis of carbamide and sublimation one on the basis of ammonium oxalate are tested. The fire tests confirmed the efficiency of copper walls by cooling through the paste-like coolants of two types by multiple thermal loadings. It is proved that the gas generator is a comfortable instrument for working off the MHD channel design on thermal stability through multicycle operation

  18. In Silico Structure and Sequence Analysis of Bacterial Porins and Specific Diffusion Channels for Hydrophilic Molecules: Conservation, Multimericity and Multifunctionality

    Science.gov (United States)

    Vollan, Hilde S.; Tannæs, Tone; Vriend, Gert; Bukholm, Geir

    2016-01-01

    Diffusion channels are involved in the selective uptake of nutrients and form the largest outer membrane protein (OMP) family in Gram-negative bacteria. Differences in pore size and amino acid composition contribute to the specificity. Structure-based multiple sequence alignments shed light on the structure-function relations for all eight subclasses. Entropy-variability analysis results are correlated to known structural and functional aspects, such as structural integrity, multimericity, specificity and biological niche adaptation. The high mutation rate in their surface-exposed loops is likely an important mechanism for host immune system evasion. Multiple sequence alignments for each subclass revealed conserved residue positions that are involved in substrate recognition and specificity. An analysis of monomeric protein channels revealed particular sequence patterns of amino acids that were observed in other classes at multimeric interfaces. This adds to the emerging evidence that all members of the family exist in a multimeric state. Our findings are important for understanding the role of members of this family in a wide range of bacterial processes, including bacterial food uptake, survival and adaptation mechanisms. PMID:27110766

  19. Channelization in Porous Media driven by Erosion and Deposition

    CERN Document Server

    Jäger, Robin; Herrmann, Hans Jürgen

    2016-01-01

    We develop and validate a new model to study simultaneous erosion and deposition in three-dimensional porous media. We study the changes of the porous structure induced by the deposition and erosion of matter on the solid surface and find that when both processes are active, channelization in the porous structure always occurs. The channels can be stable or only temporary depending mainly on the driving mechanism. Whereas a fluid driven by a constant pressure drop in general does not form steady channels, imposing a constant flux always produces stable channels within the porous structure. Furthermore we investigate how changes of the local deposition and erosion properties affect the final state of the porous structure, finding that the larger the range of wall shear stress for which there is neither erosion nor deposition, the more steady channels are formed in the structure.

  20. An experimental study on turbulent-stripe structure in transitional channel flow

    CERN Document Server

    Tsukahara, Takahiro

    2014-01-01

    Turbulent stripe, which would occur in turbulent channel flows at transitional Reynolds numbers, was studied experimentally by flow visualization using reflective flake particles. In a range of bulk mean Reynolds number Re = 1700-2000, the turbulent stripe was observed to be inclined at angles of 20-30 degree against the streamwise direction, and its streamwise wave length was about 60 times of the channel half width (delta). The longitudinal streaks with the spanwise spacing of 1.6delta were found in the quasi-laminar regions. The critical Reynolds number was Re = 1300. Time traces of the streamwise velocity were measured by laser Doppler velocimetry, revealing similarity to the equilibrium turbulent puff in the transitional pipe flow.

  1. Exploration of the pore structure of a peptide-gated Na+channel

    OpenAIRE

    Poët, Mallorie; Tauc, Michel; Lingueglia, Eric; Cance, Peggy; Poujeol, Philippe; Lazdunski, Michel; Counillon, Laurent

    2001-01-01

    The FMRF-amide-activated sodium channel (FaNaC), a member of the ENaC/Degenerin family, is a homotetramer, each subunit containing two transmembrane segments. We changed independently every residue of the first transmembrane segment (TM1) into a cysteine and tested each position’s accessibility to the cysteine covalent reagents MTSET and MTSES. Eleven mutants were accessible to the cationic MTSET, showing that TM1 faces the ion translocation pathway. This was confirmed by the accessibility of...

  2. Structure and properties of ultrafine-grained aluminium alloys prepared by equal-channel angular pressing

    Czech Academy of Sciences Publication Activity Database

    Dám, Karel; Jäger, Aleš; Vystavěl, Tomáš; Lejček, Pavel

    Aachen: RWTH Aachen University, 2010 - (Epple, D.; Nick, M.; Strämke, M.; Zilkens, C.), s. 141-144 ISBN N. [ ISDM 2010. Aachen (DE), 16.09.2010-18.09.2010] R&D Projects: GA AV ČR KAN300100801 Institutional research plan: CEZ:AV0Z10100520 Keywords : Equal-Channel Angular Pressing * aluminium alloys * grain refinement Subject RIV: BM - Solid Matter Physics ; Magnetism

  3. WBAN Off-Body Channel Angular Structure Comparison between SAGE Estimation and Ray Tracing Simulation

    OpenAIRE

    Amiot, Nicolas; Mhedhbi, Meriem; Uguen, Bernard; Derrico, Raffaele

    2015-01-01

    In this paper, we present a comparison between Off-Body channel characteristics estimated with Space-Alternating Generalized Expectation-Maximization (SAGE) algorithm from measurement data and those obtained from ray-tracing simulated data. Measurement data were obtained considering a body-worn antenna on a phantom and an external one simulating an access point. The chosen simulation approach takes into account the influence of the body directly into the antenna radiation pattern, and not by ...

  4. Structural analysis of erbium {delta}-doped InP by OMVPE with RBS-channeling

    Energy Technology Data Exchange (ETDEWEB)

    Yuhara, Junji; Takeda, Hitoshi; Matsubara, Naoki; Tabuchi, Masao; Fujiwara, Yasufumi; Morita, Kenji; Takeda, Yoshikazu [Nagoya Univ. (Japan). School of Engineering

    1997-03-01

    We have determined the lattice location of Er in InP {delta}-doped by OMVPE with RBS-channeling. Er concentrations along the <001> and <011> directions are same as random yields, while a significant flux peaking effect is seen for the <111> direction. These data suggest that Er atoms occupy the site equivalent to the hexahedral site in InP lattice. (author)

  5. The structure of phospholamban pentamer reveals a channel-like architecture in membranes

    OpenAIRE

    Oxenoid, Kirill; Chou, James J.

    2005-01-01

    Contraction and relaxation of heart muscle cells is regulated by cycling of calcium between cytoplasm and sarcoplasmic reticulum. Human phospholamban (PLN), expressed in the sarcoplasmic reticulum membrane as a 30-kDa homopentamer, controls cellular calcium levels by a mechanism that depends on its phosphorylation. Since PLN was discovered ≈30 years ago, extensive studies have aimed to explain how it influences calcium pumps and to determine whether it acts as an ion channel. We have determin...

  6. Wavelet Analysis on Turbulent Structure in Drag-Reducing Channel Flow Based on Direct Numerical Simulation

    OpenAIRE

    Xuan Wu; Bo Yu(Brookhaven National Lab); Yi Wang

    2013-01-01

    Direct numerical simulation has been performed to study a polymer drag-reducing channel flow by using a discrete-element model. And then, wavelet analyses are employed to investigate the multiresolution characteristics of velocity components based on DNS data. Wavelet decomposition is applied to decompose velocity fluctuation time series into ten different frequency components including approximate component and detailed components, which show more regular intermittency and burst events in dr...

  7. Crystal structure and characterization of a novel luminescent 2D metal-organic framework, poly[aquaitaconatocalcium(II)] possessing an open framework structure with hydrophobic channels

    Science.gov (United States)

    Nair, Remya M.; Sudarsanakumar, M. R.; Suma, S.; Prathapachandra Kurup, M. R.

    2016-02-01

    A novel 2D metal-organic framework poly[aquaitaconatocalcium(II)] with an open framework structure has been successfully grown by single gel diffusion technique. Sodium metasilicate was used for gel preparation. The structure was determined by single crystal X-ray diffraction. The compound crystallizes in monoclinic space group P21/c with hydrophobic 1D channels. The obtained crystals were further characterized by elemental analysis, FT-IR and UV-Visible spectroscopy, powder X-ray diffraction and thermogravimetry. The luminescent property of the complex was also discussed.

  8. Large eddy simulation of a buoyancy-aided flow in a non-uniform channel - Buoyancy effects on large flow structures

    OpenAIRE

    Duan, Y.; S. He

    2016-01-01

    It has been a long time since the 'abnormal' turbulent intensity distribution and high inter-sub-channel mixing rates were observed in the vicinity of the narrow gaps formed by the fuel rods in nuclear reactors. The extraordinary flow behaviour was first described as periodic flow structures by Hooper and Rehme (1984). Since then, the existences of large flow structures were demonstrated by many researchers in various non-uniform flow channels. It has been proved by many authors that the Stro...

  9. ANN Model for Predicting the Impact of Submerged Aquatic Weeds Existence on the Hydraulic Performance of Branched Open Channel System Accompanied by Water Structures

    International Nuclear Information System (INIS)

    The existence of hydraulic structures in a branched open channel system urges the need for considering the gradually varied flow criterion in evaluating the different hydraulic characteristics in this type of open channel system. Computations of hydraulic characteristics such as flow rates and water surface profiles in branched open channel system with hydraulic structures require tremendous numerical effort especially when the flow cannot be assumed uniform. In addition, the existence of submerged aquatic weeds in this branched open channel system adds to the complexity of the evaluation of the different hydraulic characteristics for this system. However, this existence of aquatic weeds can not be neglected since it is very common in Egyptian open channel systems. Artificial Neural Network (ANN) has been widely utilized in the past decade in civil engineering applications for the simulation and prediction of the different physical phenomena and has proven its capabilities in the different fields. The present study aims towards introducing the use of ANN technique to model and predict the impact of submerged aquatic weeds existence on the hydraulic performance of branched open channel system. Specifically the current paper investigates a branched open channel system that consists of main channel supplies water to two branch channels that are infested by submerged aquatic weeds and have water structures such as clear over fall weirs and sluice gates. The results of this study showed that ANN technique was capable, with small computational effort and high accuracy, of predicting the impact of different infestation percentage for submerged aquatic weeds on the hydraulic performance of branched open channel system with two different hydraulic structures

  10. The influence of a drop-hydraulic structure on the mountain stream channel regime - case study from the Polish Carpathians

    Directory of Open Access Journals (Sweden)

    Artur RADECKI-PAWLIK

    2013-06-01

    Full Text Available Basic hydraulic parameters such as shear stress, stream power, unit stream power and water velocities were calculated and measured within the region of a drop hydraulic structure erected on the Kasinczanka stream in the Polish Carpathians. Besides examining the hydrodynamics of the stream the study investigated also the distribution of grain size in the bed-load at the upstream and downstream aprons of the structure. It was revealed that grains deposited at the upstream apron were finer than those deposited at the downstream apron. At the same time, shear stresses and unit stream power values were found to be quite stable upstream of the drop structure, but to change significantly along the stream channel downstream of the structure’s energy dissipating pool

  11. High-density channel model and detection method for signal readout from super-resolution near-field structure discs

    Science.gov (United States)

    Hosogai, Shota; Ansai, Tsutomu; Yoshinari, Takehisa; Tanabe, Takaya

    2016-09-01

    Although a readout method using the super-resolution near-field structure (super-RENS) effect can overcome diffraction limits, readout characteristics for greatly surpassed high-density conditions do not become clear, because a high-density channel function having a differential response property is superimposed on a normal readout function. We propose a high-density channel model to indicate the properties of the super-RENS effect directly. This model can be expressed as a differential response function using the finite impulse response (FIR) filter model. It expresses the super-RENS readout process, which is divided on the basis of recording densities such as high and normal Blu-ray Disc™ densities. We estimated the properties of super-RENS readout signals by comparison between theoretical expressions and experiments. Results show that good signal quality require readout signals having sharp peaks and smaller offsets. We also evaluated the channel model by adding an adaptive FIR filter and a Viterbi decoder by simulations. Results show that the super-RENS disc can achieve a fourfold higher recording density if the signal-to-noise ratio (S/N) is improved to 6 dB in the case of partial response (PR) (1 + D + D 2).

  12. Effect of a Weir-Type Obstruction with Different Geometric and Hydraulic Conditions on Flow Structure in an Open Channel

    Directory of Open Access Journals (Sweden)

    Shahid Ali

    2014-07-01

    Full Text Available This paper presents results from an experimental study which was conducted at Technical University Delft, Netherland. The research was made on obstructions resembling weirs in an open channel. This weir-type obstruction was a representative of groyne/dike in a natural channel. The experimentation was performed in the laboratory for different values of inflow (25 l/sec and 40 l/sec, weir with and without vegetation and with different leeward slopes of the weir (1:4 and 1:7. The results were obtained for Reynolds normal stresses, longitudinal and vertical velocities. A comparison was made between the results of 1:4 and 1:7 leeward slope ratios. The data was collected with a LDA (Laser Doppler Anemometer. The vegetation was modeled with vertical circular rods placed over the crest of the weir. The blockage area due to this vegetation was 25% of the total area. The velocity data was gathered at around ten locations both at upstream and downstream the weir to get an insight into the flow structure. The results have been presented in the shape of vertical profiles both for velocities as well as Reynolds stresses at different locations of the channel.

  13. On the structure of the N-terminal domain of the MscL channel: helical bundle or membrane interface.

    Science.gov (United States)

    Iscla, Irene; Wray, Robin; Blount, Paul

    2008-09-01

    The mechanosensitive channel of large conductance, MscL, serves as a biological emergency release valve protecting bacteria from acute osmotic downshock and is to date the best characterized mechanosensitive channel. A well-recognized and supported model for Escherichia coli MscL gating proposes that the N-terminal 11 amino acids of this protein form a bundle of amphipathic helices in the closed state that functionally serves as a cytoplasmic second gate. However, a recently reexamined crystal structure of a closed state of the Mycobacterium tuberculosis MscL shows these helices running along the cytoplasmic surface of the membrane. Thus, it is unclear if one structural model is correct or if they both reflect valid closed states. Here, we have systematically reevaluated this region utilizing cysteine-scanning, in vivo functional characterization, in vivo SCAM, electrophysiological studies, and disulfide-trapping experiments. The disulfide-trapping pattern and functional studies do not support the helical bundle and second-gate hypothesis but correlate well with the proposed structure for M. tuberculosis MscL. We propose a functional model that is consistent with the collective data. PMID:18515388

  14. Characteristic turbulent structure of a modified drag-reduced surfactant solution flow via dosing water from channel wall

    International Nuclear Information System (INIS)

    Highlights: • Modulation of near wall turbulence was conducted on a viscoelastic drag-reduced flow. • Flow of coexisting Newtonian and non-Newtonian fluids was realized. • Drag reduction is enhanced, although the Reynolds shear stress increases. • An obvious regional characteristic structure is presented. • Anisotropy of near-wall turbulence was discussed. - Abstract: The modification of the near-wall structure is very important for the control of wall turbulence. To ascertain the effect of near-wall modulation on the viscoelastic drag-reduced flow, the modified characteristics of a surfactant solution channel flow were investigated experimentally. The modulation was conducted on the boundary of the channel flow by injecting water from the whole surface of one side of the channel wall. The diffusion process of the injected water was observed by using the planar laser-induced fluorescence technique. The velocity statistics and characteristic structure including the spatial distributions of instantaneous streamwise velocity, swirling strength, and Reynolds shear stress were analyzed based on the velocity vectors acquired in the streamwise wall-normal plane by using the particle imaging velocimetry technique. The results indicated that the disturbance of the injected water was constricted within a finite range very near the dosing wall, and the Reynolds shear stress was increased in this region. However, the eventual drag reduction rate was found to be increased due to a relatively large decrement of viscoelastic shear stress in this near-wall region. Moreover, the flow structure under this modulation presented obvious regional characteristics. In the unstable disturbed region, the mixing of high-speed and low-speed fluids and the motions of ejection and sweep occurred actively. Many clockwise vortex cores were also found to be generated. This characteristic structure was similar to that in the ordinary turbulence of Newtonian fluid. Nevertheless, outside

  15. Control of the Aquaporin-4 Channel Water Permeability by Structural Dynamics of Aromatic/Arginine Selectivity Filter Residues.

    Science.gov (United States)

    Kitchen, Philip; Conner, Alex C

    2015-11-17

    The aquaporins (AQPs) make up a family of integral membrane proteins that control cellular water flow. Gating of the water channel by conformational changes induced by phosphorylation or protein-protein interactions is an established regulatory mechanism for AQPs. Recent in silico and crystallographic analyses of the structural biology of AQPs suggest that the rate of water flow can also be controlled by small movements of single-amino acid side chains lining the water pore. Here we use measurements of the membrane water permeability of mammalian cells expressing AQP4 mutants to provide the first in vitro evidence in support of this hypothesis. PMID:26512424

  16. Final Report - Interaction of radiation and charged particles in miniature plasma structures

    Energy Technology Data Exchange (ETDEWEB)

    Antonsen, Thomas M.

    2014-07-16

    The extension of our program to the development of theories and models capable of describing the interactions of intense laser pulses and charged particles in miniature plasma channels is reported. These channels, which have recently been created in the laboratory, have unique dispersion properties that make them interesting for a variety of applications including particle acceleration, high harmonic generation, and THz generation. Our program systematically explored the properties of these channels, including dispersion, losses, and coupling. A particular application that was pursued is the generation of intense pulses of THz radiation by short laser pulses propagating these channels. We also explored the nonlinear dynamics of laser pulses propagating in these channels.

  17. The structure of decagonal Al-Cu-Co-Si: an electron channelling study

    International Nuclear Information System (INIS)

    The planarity of the (00001) planes in the decagonal quasicrystal Al65Cu16Co15Si4 is investigated by a further developed electron channeling technique, which is based on the dependence of the X-ray yield on the direction of the incident electron beam. It is found that Si atoms are located midway between the (00001) planes containing the Co, Cu and Al atoms. This result is discussed in terms of the electronic properties of Al and Si. A straightforward explanation is given for the phase transition of Al65-xCo20Cu15Six from decagonal (x 4.5). (author)

  18. A novel approach for determination of fundamental physical transport processes in natural channel design restoration sites with river steering structures

    Science.gov (United States)

    Robinson, J.; Endreny, T. A.; Becker, J. F.; Kroll, C.

    2012-12-01

    River restoration projects in the United States are frequently proposed and constructed with the intention of improving water quality, yet relatively little evidence exists regarding the success of these efforts. Many projects use an approach known as natural channel design (NCD), and include river steering structures. Prior assessment of water quality improvements within NCD sites has involved hydrologic retention modeling using a non-reactive tracer, with the goal of separately identifying hyporheic and surface transient storage (STS). A comparative approach involving NCD and non-NCD sites used by the authors yielded mixed results: although physically-based assessments of STS profiles in many NCD sites support larger STS zones than non-NCD sites, these differences are not apparent when examining common transient storage metrics. Inverse modeling within nine NCD sites reveals additional obstacles, including generation of spurious lateral inflow/outflow values, limited detection of hyporheic processes due to strong surface transient storage, shear and Taylor dispersion, and divergent temporal patterns of solute flux over channel cross sections bounding structures. To overcome the obstacles encountered with 1D inverse modeling, data is presented from a new approach used in NCD reaches. This approach involves deriving a mass flux signature via pairing velocity and channel geometry with multiple electrical conductivity (EC) loggers deployed laterally at control cross sections (CCS). These CCS bound sub-reach segments (15 total across four NCD reaches) that include river steering structures and intermediate geomorphic features. Velocity and geometry measurements yield discharge values surrounding each EC logger which are used to weight a composite mass flux breakthrough curve above, within, and below each segment. Composite mass flux signatures reflect exchange processes that are not fully integrated laterally immediately below structures, and can be analyzed via

  19. Crystal structure of the eukaryotic strong inward-rectifier K+ channel Kir2.2 at 3.1 A resolution.

    Science.gov (United States)

    Tao, Xiao; Avalos, Jose L; Chen, Jiayun; MacKinnon, Roderick

    2009-12-18

    Inward-rectifier potassium (K+) channels conduct K+ ions most efficiently in one direction, into the cell. Kir2 channels control the resting membrane voltage in many electrically excitable cells, and heritable mutations cause periodic paralysis and cardiac arrhythmia. We present the crystal structure of Kir2.2 from chicken, which, excluding the unstructured amino and carboxyl termini, is 90% identical to human Kir2.2. Crystals containing rubidium (Rb+), strontium (Sr2+), and europium (Eu3+) reveal binding sites along the ion conduction pathway that are both conductive and inhibitory. The sites correlate with extensive electrophysiological data and provide a structural basis for understanding rectification. The channel's extracellular surface, with large structured turrets and an unusual selectivity filter entryway, might explain the relative insensitivity of eukaryotic inward rectifiers to toxins. These same surface features also suggest a possible approach to the development of inhibitory agents specific to each member of the inward-rectifier K+ channel family. PMID:20019282

  20. Structural Waters Define a Functional Channel Mediating Activation of the GPCR, rhodopsin

    Energy Technology Data Exchange (ETDEWEB)

    Angel, T.; Gupta, S; Jastrzebska, B; Palczewski, K; Chance, M

    2009-01-01

    Structural water molecules may act as prosthetic groups indispensable for proper protein function. In the case of allosteric activation of G protein-coupled receptors (GPCRs), water likely imparts structural plasticity required for agonist-induced signal transmission. Inspection of structures of GPCR superfamily members reveals the presence of conserved embedded water molecules likely important to GPCR function. Coupling radiolytic hydroxyl radical labeling with rapid H2O18 solvent mixing, we observed no exchange of these structural waters with bulk solvent in either ground state or for the Meta II or opsin states. However, the radiolysis approach permitted labeling of selected side chain residues within the transmembrane helices and revealed activation-induced changes in local structural constraints likely mediated by dynamics of both water and protein. These results suggest both a possible general mechanism for water-dependent communication in family A GPCRs based on structural conservation, and a strategy for probing membrane protein structure.

  1. Structure of a Bacterial Virus DNA-Injection Protein Complex Reveals a Decameric Assembly with a Constricted Molecular Channel.

    Science.gov (United States)

    Zhao, Haiyan; Speir, Jeffrey A; Matsui, Tsutomu; Lin, Zihan; Liang, Lingfei; Lynn, Anna Y; Varnado, Brittany; Weiss, Thomas M; Tang, Liang

    2016-01-01

    The multi-layered cell envelope structure of Gram-negative bacteria represents significant physical and chemical barriers for short-tailed phages to inject phage DNA into the host cytoplasm. Here we show that a DNA-injection protein of bacteriophage Sf6, gp12, forms a 465-kDa, decameric assembly in vitro. The electron microscopic structure of the gp12 assembly shows a ~150-Å, mushroom-like architecture consisting of a crown domain and a tube-like domain, which embraces a 25-Å-wide channel that could precisely accommodate dsDNA. The constricted channel suggests that gp12 mediates rapid, uni-directional injection of phage DNA into host cells by providing a molecular conduit for DNA translocation. The assembly exhibits a 10-fold symmetry, which may be a common feature among DNA-injection proteins of P22-like phages and may suggest a symmetry mismatch with respect to the 6-fold symmetric phage tail. The gp12 monomer is highly flexible in solution, supporting a mechanism for translocation of the protein through the conduit of the phage tail toward the host cell envelope, where it assembles into a DNA-injection device. PMID:26882199

  2. Structure of a Bacterial Virus DNA-Injection Protein Complex Reveals a Decameric Assembly with a Constricted Molecular Channel.

    Directory of Open Access Journals (Sweden)

    Haiyan Zhao

    Full Text Available The multi-layered cell envelope structure of Gram-negative bacteria represents significant physical and chemical barriers for short-tailed phages to inject phage DNA into the host cytoplasm. Here we show that a DNA-injection protein of bacteriophage Sf6, gp12, forms a 465-kDa, decameric assembly in vitro. The electron microscopic structure of the gp12 assembly shows a ~150-Å, mushroom-like architecture consisting of a crown domain and a tube-like domain, which embraces a 25-Å-wide channel that could precisely accommodate dsDNA. The constricted channel suggests that gp12 mediates rapid, uni-directional injection of phage DNA into host cells by providing a molecular conduit for DNA translocation. The assembly exhibits a 10-fold symmetry, which may be a common feature among DNA-injection proteins of P22-like phages and may suggest a symmetry mismatch with respect to the 6-fold symmetric phage tail. The gp12 monomer is highly flexible in solution, supporting a mechanism for translocation of the protein through the conduit of the phage tail toward the host cell envelope, where it assembles into a DNA-injection device.

  3. DNS of heat transfer in a transitional channel flow accompanied by a turbulent puff-like structure

    CERN Document Server

    Tsukahara, Takahiro

    2014-01-01

    Direct numerical simulations of turbulent heat transfer in fully-developed channel flows have been performed in a range of friction Reynolds number between 60 and 180, based on the friction velocity and the channel half width $\\delta$, with emphasis on a puff-like structure, large-scale spatial intermittency. For the Reynolds numbers lower than 80 with a large computational domain of 51.2 x 2 x 22.5, the turbulent puff was observed and its significant influences on the momentum and heat transports were found. The spatial structure of the equilibrium puff, or the localized turbulence, was examined with taking account of two different thermal boundary conditions: the uniform heat-flux heating and the constant temperature difference between the walls. It was revealed that there existed a localized strong turbulent region in the form of an oblique band, along which a spanwise secondary flow was induced. In consequence, at the present lowest Reynolds number as low as 60, the flow remained turbulent and the larger ...

  4. Farmer Identification and Commitment Responses to Institutional Change in Marketing Channel Structures

    OpenAIRE

    Gow, Hamish R.; Stevenson, Mark; Westgren, Randall E.; Sonka, Steven T.

    2005-01-01

    The structure of the New Zealand merino industry has been through a period of rapid organizational change and marketing innovation over the past decade. This has seen it move away from a publicly regulated spot auction market structure characterised by undifferentiated product receiving pooled equilibrium commodity prices often at a discount to the international market price to a market structure composed of both privately controlled strongly vertically integrated marketing initiatives charac...

  5. Coherent structure extraction in turbulent channel flow using boundary adapted wavelets

    CERN Document Server

    Sakurai, Teluo; Schneider, Kai; Farge, Marie; Morishita, Koji; Ishihara, Takashi

    2016-01-01

    We present a construction of isotropic boundary adapted wavelets, which are orthogonal and yield a multi-resolution analysis. We analyze direct numerical simulation data of turbulent channel flow computed at a friction Reynolds number of 395, and investigate the role of coherent vorticity. Thresholding of the vorticity wavelet coefficients allows to split the flow into two parts, coherent and incoherent vorticity. The coherent vorticity is reconstructed from their few intense wavelet coefficients. The statistics of the coherent part, i.e., energy and enstrophy spectra, are close to the statistics of the total flow, and moreover, the nonlinear energy budgets are very well preserved. The remaining incoherent part, represented by the large majority of the weak wavelet coefficients, corresponds to a structureless, i.e., noise-like, background flow whose energy is equidistributed.

  6. Polyphase Structure Based Eigen Design of Two-Channel Quadrature Mirror Filter Bank

    Directory of Open Access Journals (Sweden)

    S. K. Agrawal

    2014-09-01

    Full Text Available This paper presents a method for the design of two-channel quadrature mirror filter (QMF banks with linear phase in frequency domain. Low-pass prototype filter of the QMF bank is implemented using polyphase decomposition. Prototype filter coefficients are optimized to minimize an objective function using eigenvalue-eigenvector approach without matrix inversion. The objective function is formulated as a weighted sum of four terms, pass-band error and stop-band residual energy of low-pass analysis filter, the square error of the overall transfer function at the quadrature frequency and amplitude distortion of the filter bank. The simulation results clearly show that the proposed method requires less computational efforts in comparison to the other state-of-art existing design methods.

  7. Varying the counter ion changes the kinetics, but not the final structure of colloidal gels.

    Science.gov (United States)

    Zhang, Li; Mikhailovskaya, Alesya; Constantin, Doru; Foffi, Giuseppe; Tavacoli, Joseph; Schmitt, Julien; Muller, François; Rochas, Cyrille; Wang, Nan; Langevin, Dominique; Salonen, Anniina

    2016-02-01

    We show that, while the gelation of colloidal silica proceeds much faster in the presence of added KCl than NaCl, the final gels are very similar in structure and properties. We have studied the gelation process by visual inspection and by small angle X-ray scattering for a range of salt and silica particle concentrations. The characteristic times of the early aggregation process and the formation of a stress-bearing structure with both salts are shown to collapse onto master curves with single multiplicative constants, linked to the stability ratio of the colloidal suspensions. The influence of the salt type and concentration is confirmed to be mainly kinetic, as the static structure factors and viscoelastic moduli of the gels are shown to be equivalent at normalized times. While there is strong variation in the kinetics, the structure and properties of the gel at long-times are shown to be mainly controlled by the concentration of particles, and hardly influenced by the type or the concentration of salt. This suggests that the differences between gels generated by different salts are only transient in time. PMID:26520820

  8. The structure of zetekitoxin AB, a saxitoxin analog from the Panamanian golden frog Atelopus zeteki: a potent sodium-channel blocker.

    Science.gov (United States)

    Yotsu-Yamashita, Mari; Kim, Yong H; Dudley, Samuel C; Choudhary, Gaurav; Pfahnl, Arnold; Oshima, Yasukatsu; Daly, John W

    2004-03-30

    Bufonid anurans of the genus Atelopus contain both steroidal bufadienolides and various guanidinium alkaloids of the tetrodotoxin class. The former inhibit sodium-potassium ATPases, whereas the latter block voltage-dependent sodium channels. The structure of one guanidinium alkaloid, zetekitoxin AB, has remained a mystery for over 30 years. The structure of this alkaloid now has been investigated with a sample of approximately 0.3 mg, purified from extracts obtained decades ago from the Panamanian golden frog Atelopus zeteki. Detailed NMR and mass spectral analyses have provided the structure and relative stereochemistry of zetekitoxin AB and have revealed that it is an analog of saxitoxin. The proposed structure is characterized by richness of heteroatoms (C16H25N8O12S) and contains a unique 1,2-oxazolidine ring-fused lactam, a sulfate ester, and an N-hydroxycarbamate moiety. Zetekitoxin AB proved to be an extremely potent blocker of voltage-dependent sodium channels expressed in Xenopus oocytes. The IC50 values were 280 pM for human heart channels, 6.1 pM for rat brain IIa channels, and 65 pM for rat skeletal muscle channels, thus being roughly 580-, 160-, and 63-fold more potent at these channels than saxitoxin. PMID:15070720

  9. Structural properties and band offset determination of p-channel mixed As/Sb type-II staggered gap tunnel field-effect transistor structure

    OpenAIRE

    Zhu, Y.; Jain, N; Mohata, Dheeraj K.; Datta, S; Lubyshev, Dmitri; Fastenau, Joel M.; Liu, A. K.; Hudait, Mantu K.

    2012-01-01

    The structural properties and band offset determination of p-channel staggered gap In0.7Ga0.3As/GaAs0.35Sb0.65 heterostructure tunnel field-effect transistor (TFET) grown by molecular beam epitaxy (MBE) were investigated. High resolution x-ray diffraction revealed that the active layers are strained with respect to "virtual substrate." Dynamic secondary ion mass spectrometry confirmed an abrupt junction profile at the In0.7Ga0.3As/GaAs0.35Sb0.65 heterointerface and minimal level of intermixin...

  10. Structure and properties of Ti-Ni-based alloys after equal-channel angular pressing and high-pressure torsion

    International Nuclear Information System (INIS)

    Structure formation and functional properties of Ti-48.5, 50.0, 50.6 and 50.7 at.% Ni and Ti-47 at.% Ni-3 at.% Fe shape memory alloys under conditions of high-pressure torsion (HPT) and equal-channel angular pressing (ECAP) in dependence on deformation temperature and post-deformation annealing were studied using electron microscopy and mechanical testing methods. The upper limiting deformation temperature for nanocrystalline structure formation under continuous severe deformation in HPT were determined for aging (somewhat higher than 400 deg. C) and non-aging (about 300-350 deg. C) alloys. As a result of ECAP of Ti-Ni and Ti-Ni-Fe alloys at 350-500 deg. C in six to eight passes, a submicrocrystalline structure with the grain size of 0.1-0.2 μm (at 350 deg. C), 0.2-0.4 μm (at 450 deg. C) and 0.3-0.5 μm (at 500 deg. C) was obtained. The highest functional properties of Ti-50.6% Ni alloy which exceed the best results provided by traditional thermomechanical treatment, correspond to the finest submicrocrystalline structure formation after ECAP at 350 deg. C. The low-temperature annealing after ECAP does not deteriorate the functional properties as it does not increase the austenite grain size. For obtaining actual nanocrystalline structure in bulk samples under ECAP conditions, the ECAP temperature should be below 350 deg. C

  11. Final Report on "Development and Testing of Advanced Accelerator Structures and Technologies at 11.424 GHz"

    Energy Technology Data Exchange (ETDEWEB)

    Gold, Steven H. [Naval Research Laboratory

    2013-10-13

    This is the final report on the research program ?Development and Testing of Advanced Accelerator Structures and Technologies at 11.424 GHz,? which was carried out by the Naval Research Laboratory (NRL) under Interagency Agreement DE?AI02?01ER41170 with the Department of Energy. The period covered by this report is 15 July 2010 ? 14 July 2013. The program included two principal tasks. Task 1 involved a study of the key physics issues related to the use of high gradient dielectric-loaded accelerating (DLA) structures in rf linear accelerators and was carried out in collaboration with Argonne National Laboratory (ANL) and Euclid Techlabs LLC. Task 2 involved a study of high power active microwave pulse compressors and was carried out in collaboration with Omega-P, Inc. and the Institute of Applied Physics of the Russian Academy of Sciences in Nizhny Novgorod. The studies under Task 1 were focused on rf-induced multipactor and breakdown in externally driven DLA structures at the 200-ns timescale. Suppression of multipactor and breakdown are essential to the practical application of dielectric structures in rf linear accelerators. The structures that were studied were developed by ANL and Euclid Techlabs and their performance was evaluated at high power in the X-band Magnicon Laboratory at NRL. Three structures were designed, fabricated, and tested, and the results analyzed in the first two years of the program: a clamped quartz traveling-wave (TW) structure, a externally copper-coated TW structure, and an externally copper-coated dielectric standing-wave (SW) structure. These structures showed that rf breakdown could be largely eliminated by eliminating dielectric joints in the structures, but that the multipactor loading was omnipresent. In the third year of the program, the focus of the program was on multipactor suppression using a strong applied axial magnetic field, as proposed by Chang et al. [C. Chang et al., J. Appl. Phys. 110, 063304 (2011).], and a

  12. Structure of the Cyclic Nucleotide-Binding Homology Domain of the hERG Channel and Its Insight into Type 2 Long QT Syndrome.

    Science.gov (United States)

    Li, Yan; Ng, Hui Qi; Li, Qingxin; Kang, CongBao

    2016-01-01

    The human ether-à-go-go related gene (hERG) channel is crucial for the cardiac action potential by contributing to the fast delayed-rectifier potassium current. Mutations in the hERG channel result in type 2 long QT syndrome (LQT2). The hERG channel contains a cyclic nucleotide-binding homology domain (CNBHD) and this domain is required for the channel gating though molecular interactions with the eag domain. Here we present solution structure of the CNBHD of the hERG channel. The structural study reveals that the CNBHD adopts a similar fold to other KCNH channels. It is self-liganded and it contains a short β-strand that blocks the nucleotide-binding pocket in the β-roll. Folding of LQT2-related mutations in this domain was shown to be affected by point mutation. Mutations in this domain can cause protein aggregation in E. coli cells or induce conformational changes. One mutant-R752W showed obvious chemical shift perturbation compared with the wild-type, but it still binds to the eag domain. The helix region from the N-terminal cap domain of the hERG channel showed unspecific interactions with the CNBHD. PMID:27025590

  13. Fine-scale population structure and riverscape genetics of brook trout (Salvelinus fontinalis) distributed continuously along headwater channel networks

    Science.gov (United States)

    Kanno, Y.; Vokoun, J.C.; Letcher, B.H.

    2011-01-01

    Linear and heterogeneous habitat makes headwater stream networks an ideal ecosystem in which to test the influence of environmental factors on spatial genetic patterns of obligatory aquatic species. We investigated fine-scale population structure and influence of stream habitat on individual-level genetic differentiation in brook trout (Salvelinus fontinalis) by genotyping eight microsatellite loci in 740 individuals in two headwater channel networks (7.7 and 4.4 km) in Connecticut, USA. A weak but statistically significant isolation-by-distance pattern was common in both sites. In the field, many tagged individuals were recaptured in the same 50-m reaches within a single field season (summer to fall). One study site was characterized with a hierarchical population structure, where seasonal barriers (natural falls of 1.5-2.5 m in height during summer base-flow condition) greatly reduced gene flow and perceptible spatial patterns emerged because of the presence of tributaries, each with a group of genetically distinguishable individuals. Genetic differentiation increased when pairs of individuals were separated by high stream gradient (steep channel slope) or warm stream temperature in this site, although the evidence of their influence was equivocal. In a second site, evidence for genetic clusters was weak at best, but genetic differentiation between individuals was positively correlated with number of tributary confluences. We concluded that the population-level movement of brook trout was limited in the study headwater stream networks, resulting in the fine-scale population structure (genetic clusters and clines) even at distances of a few kilometres, and gene flow was mitigated by 'riverscape' variables, particularly by physical barriers, waterway distance (i.e. isolation-by-distance) and the presence of tributaries. ?? 2011 Blackwell Publishing Ltd.

  14. Communication: Determining the structure of the N2Ar van der Waals complex with laser-based channel-selected Coulomb explosion

    International Nuclear Information System (INIS)

    We experimentally reconstructed the structure of the N2Ar van der Waals complex with the technique of laser-based channel-selected Coulomb explosion imaging. The internuclear distance between the N2 center of mass and the Ar atom, i.e., the length of the van der Waals bond, was determined to be 3.88 Å from the two-body explosion channels. The angle between the van der Waals bond and the N2 principal axis was determined to be 90° from the three-body explosion channels. The reconstructed structure was contrasted with our high level ab initio calculations. The agreement demonstrated the potential application of laser-based Coulomb explosion in imaging transient molecular structure, particularly for floppy van der Waals complexes, whose structures remain difficult to be determined by conventional spectroscopic methods

  15. Microsecond molecular dynamics simulations of the open state structure of a bacterial voltage-gated sodium channel reveal mechanisms of ion selectivity and conduction

    OpenAIRE

    Ulmschneider, Martin B.; Bagneris, Claire; McCusker, Emily C.; Ulmschneider, J.P.; Wallace, Bonnie A.

    2013-01-01

    Microsecond atomic detail equilibrium molecular dynamics simulations based on the open-state crystal structure (McCusker et al, 2012, Nature Comm) of a bacterial voltage-gated sodium channel (NavMs) have been employed to characterize the mechanisms underlying ion selectivity and conductance of the channel embedded in a lipid bilayer membrane. This approach captured the full plethora of conduction events, revealing a complex mixture of single and multi-ion phenomena, with decoupled rapid bi-di...

  16. Crystal Structure of the Eukaryotic Strong Inward-Rectifier K+ Channel Kir2.2 at 3.1 Å Resolution

    OpenAIRE

    Tao, Xiao; Avalos, Jose L.; Chen, Jiayun; MacKinnon, Roderick

    2009-01-01

    Inward-rectifier potassium (K+) channels conduct K+ ions most efficiently in one direction, into the cell. Kir2 channels control the resting membrane voltage in many electrically excitable cells and heritable mutations cause periodic paralysis and cardiac arrhythmia. We present the crystal structure of Kir2.2 from chicken, which, excluding the unstructured amino and carboxyl termini, is 90% identical to human Kir2.2. Crystals containing rubidium (Rb+), strontium (Sr2+), and europium (Eu3+) re...

  17. Effects of waterlogging on the soil structure of some Italian soils in relation to the GAEC cross-compliance standard Maintenance of farm channel networks and field convexity

    OpenAIRE

    Paolo Bazzoffi; Salvatore Nieddu

    2011-01-01

    The aim of this work is to assess the effectiveness of the cross-compliance standard Maintenance of farm channel networks and field convexity with respect to the environmental objective to maintain soil structure through appropriate measures indicated in Annex IV of REG. EC 1782/03. This GAEC standard concerns arable land and obliges the farmer to maintain the farm channel network and the convex shape of fields with a view to the management and preservation of temporary drainage ditches and p...

  18. Structure and mechanical behavior of Fe–Cr alloy processed by equal-channel angular pressing

    Energy Technology Data Exchange (ETDEWEB)

    Tang, H.Y. [Key Laboratory of Materials Physics, Institute of Solid State Physics, Chinese Academy of Sciences, P.O. Box 1129, Hefei 230031 (China); Hao, T., E-mail: hao.ting@issp.ac.cn [Key Laboratory of Materials Physics, Institute of Solid State Physics, Chinese Academy of Sciences, P.O. Box 1129, Hefei 230031 (China); Wang, X.P. [Key Laboratory of Materials Physics, Institute of Solid State Physics, Chinese Academy of Sciences, P.O. Box 1129, Hefei 230031 (China); Luo, G.N. [Institute of Plasma Physics, Chinese Academy of Sciences, P.O. Box 1126, Hefei 230031 (China); Liu, C.S. [Key Laboratory of Materials Physics, Institute of Solid State Physics, Chinese Academy of Sciences, P.O. Box 1129, Hefei 230031 (China); Fang, Q.F., E-mail: qffang@issp.ac.cn [Key Laboratory of Materials Physics, Institute of Solid State Physics, Chinese Academy of Sciences, P.O. Box 1129, Hefei 230031 (China)

    2015-08-15

    Highlights: • The grain size of Fe–Cr alloy can be refined to about 160 nm via ECAP method. • The strength increases monotonously with increasing the number of ECAP passes. • The total elongation (TE) decreases substantially due to ECAP processing. • The lost TE can be regained by an annealing in keeping with a higher strength. - Abstract: The microstructure and mechanical properties of Fe–18(wt)%Cr binary alloy processed by equal channel angular pressing (ECAP) method at room temperature were investigated. The average grain size of this Fe–Cr alloy was refined from several hundred of micrometers to about 160 nm after four passes extrusion. The influence of the number of passes in ECAP on the microstructure and mechanical properties of Fe–Cr alloys was investigated by means of TEM method, tensile tests, Vickers microhardness measurement and X-ray diffraction profile analysis. The ultimate tensile strength (UTS) increases and the total elongation (TE) decreases significantly with increasing the number of ECAP passes. After annealing at 650 °C, the TE of the ECAPed samples was recovered to the value before ECAP process, and at the same time the UTS was 1.2–1.3 times that of the initial sample.

  19. Transformation of Lamellar Structures in Equal Channel Angular Pressing: Geometric Model and Application to Nickel Aluminum Bronze

    Science.gov (United States)

    Barr, Cameron J.; McDonald, Daniel T.; Xia, Kenong

    2015-09-01

    Nickel aluminum bronze (NAB) with a duplex structure was subjected to equal channel angular pressing (ECAP). Samples were pressed for up to four passes at 673 K (400 °C) using routes A, BA, BC, and C, respectively, and the evolution of the microstructures was characterized. A detailed geometric model was developed to enable systematic and quantitative analysis of the transformation of the lamellar structure during ECAP. Depending on their orientations before each ECAP pass, the lamellae were either stretched, leading to fragmentation, or compressed, resulting in buckling and spheroidisation at locations of high curvature. Thanks to the continuous rotation of lamellae into the stretching orientations in route A and the non-plane strain deformation in the two B routes, they are demonstrated to be the most effective in breaking down the lamellar structure. In contrast, partial restoration due to redundant strain in route C makes it least efficient. The model applies generally to materials with a duplex structure, such as NAB and low and medium carbon steels, consisting of a hard and brittle lamellar phase and a softer and ductile matrix phase.

  20. Three-dimensional band structure of layered TiTe2: Photoemission final-state effects

    International Nuclear Information System (INIS)

    Three-dimensional band structure of unoccupied and occupied states of the prototype layered material TiTe2 is determined focusing on the ΓA line of the Brillouin zone. Dispersions and lifetimes of the unoccupied states, acting as the final states in the photoemission process, are determined from a very-low-energy electron diffraction experiment supported by first-principles calculations based on a Bloch waves treatment of multiple scattering. The experimental unoccupied states of TiTe2 feature dramatic non-free-electron effects such as multiband composition and nonparabolic dispersions. The valence band layer-perpendicular dispersions are then determined from a photoemission experiment consistently interpreted on the basis of the experimental final states to achieve control over the three-dimensional wave vector. The experimental results demonstrate the absence of the Te 4pz* Fermi surface pocket at the Γ point and significant self-energy renormalization of the valence band dispersions. Photoemission calculations based on a Bloch waves formalism within the one-step theory reveal limitations of understanding photoemission from layered materials such as TiTe2 in terms of direct transitions

  1. MEMFIS - Measuring, modelling and forecasting ice loads on structures - Final report

    Energy Technology Data Exchange (ETDEWEB)

    Dierer, S.; Cattin, R.

    2010-05-15

    This illustrated final report for the Swiss Federal Office of Energy (SFOE) takes a look at the icing-up of structures such as overhead power lines, wind turbines and aerial cableways in mountainous or arctic areas. The measurement of icing at three locations in Switzerland, in the high Alps, the alpine foothills and the Jura mountains using a vertical freely-rotating cylinder is described. Problems encountered during the measurement campaigns are described and discussed. The development of a simulation system in parallel to the measurement campaign is also discussed. A comparison of measured and simulated data calculated with the WRF and COSMO models was made difficult as a result of the problems encountered with the apparatus used. The basic effects causing icing-up are discussed and the measurement apparatus used is examined.

  2. Structure and properties of an Mg-0.3% ca magnesium alloy after multiaxial deformation and equal-channel angular pressing

    Science.gov (United States)

    Dobatkin, S. V.; Rokhlin, L. L.; Salishchev, G. A.; Kopylov, V. I.; Serebryany, V. N.; Stepanov, N. D.; Tarytina, I. E.; Kuroshev, I. S.; Martynenko, N. S.

    2014-11-01

    Multiaxial deformation (MAD) of an Mg-0.3% Ca alloy is performed when temperature decreases within the ranges 425-375 and 400-325°C. A decrease in the temperature at the end of MAD causes a decrease in the grain size from 7-8 to 0.5-2 μm and the spread of a sharp prismatic texture, which determine a high strength (σu = 194 MPa) and plasticity (δ = 39%). After MAD in the range 425-375°C, the Mg-0.3% Ca alloy is subjected to equal-channel angular pressing (ECAP) at temperatures of 275 and 325°C. ECAP causes a decrease in the grain size from 7-8 μm to 2 and 5 μm, respectively. The texture also changes from prismatic to tilted basal texture. This results in an increase in the strength to 170-160 MPa at plasticity δ = 25-30%. It is shown that MAD can be used as both final and preliminary processing before ECAP to form an ultrafine-grained structure in the Mg-0.3% Ca alloy.

  3. Vadose zone microbial community structure and activity in metal/radionuclide contaminated sediments. Final technical report

    Energy Technology Data Exchange (ETDEWEB)

    Balkwill, David L.

    2002-08-17

    This final technical report describes the research carried out during the final two months of the no-cost extension ending 11/14/01. The primary goals of the project were (1) to determine the potential for transformation of Cr(VI) (oxidized, mobile) to Cr(III) (reduced, immobile) under unsaturated conditions as a function of different levels and combinations of (a) chromium, (b) nitrate (co-disposed with Cr), and (c) molasses (inexpensive bioremediation substrate), and (2) to determine population structure and activity in experimental treatments by characterization of the microbial community by signature biomarker analysis and by RT-PCR and terminal restriction fragment length polymorphism (T-RFLP) and 16S ribosomal RNA genes. It was determined early in the one-year no-cost extension period that the T-RFLP approach was problematic in regard to providing information on the identities of microorganisms in the samples examined. As a result, it could not provide the detailed information on microbial community structure that was needed to assess the effects of treatments with chromium, nitrate, and/or molasses. Therefore, we decided to obtain the desired information by amplifying (using TR-PCR, with the same primers used for T-RFLP) and cloning 16S rRNA gene sequences from the same RNA extracts that were used for T-RFLP analysis. We also decided to use a restriction enzyme digest procedure (fingerprinting procedure) to place the clones into types. The primary focus of the research carried out during this report period was twofold: (a) to complete the sequencing of the clones, and (b) to analyze the clone sequences phylogenetically in order to determine the relatedness of the bacteria detected in the samples to each other and to previously described genera and species.

  4. Diversity, distribution and population size structure of deep Mediterranean gorgonian assemblages (Menorca Channel, Western Mediterranean Sea)

    Science.gov (United States)

    Grinyó, Jordi; Gori, Andrea; Ambroso, Stefano; Purroy, Ariadna; Calatayud, Clara; Dominguez-Carrió, Carlos; Coppari, Martina; Lo Iacono, Claudio; López-González, Pablo J.; Gili, Josep-Maria

    2016-06-01

    Gorgonians are a key group of organisms in benthic marine communities with a wide bathymetric and geographical distribution. Although their presence on continental shelves and slopes has been known for more than 100 years, knowledge concerning the ecology of deep gorgonian species is still in a very preliminary stage. To overcome this situation, gorgonian assemblages located at 40-360 m depth were studied over a large geographical area on the continental shelf and upper slope of the Menorca Channel (Western Mediterranean Sea). A quantitative analysis of video transects recorded by a manned submersible and a remotely operated vehicle, were used to examine the diversity, distribution and demography of gorgonian species. Results showed high gorgonian diversity within this depth range (a total of nine species were observed) compared to Mediterranean coastal areas. Gorgonian assemblages on the continental shelf and upper slope were mostly monospecific (respectively 73% and 76% of occupied sampling units contained one single species), whereas shelf edge assemblages were highly multispecific (92% of occupied sampling units contained several species). This contrasts with the monospecificity of Mediterranean coastal gorgonian assemblages. Gorgonian populations on the continental shelf were mostly dominated by small colonies (88% of measured colonies) with few intermediate and large colonies (12% of measured colonies). In deeper areas small colonies were still dominant (60% of measured colonies), but intermediate and large colonies were much more abundant (40% of measured colonies). This suggests high recruitment rates on the continental shelf, but perturbations (trammel nets, long lines and strong storms) may limit the presence of intermediate and large colonies. Conversely, on the shelf edge and upper slope a more stable environment may allow colonies to reach larger dimensions. The identification and ecological characterization of these deep assemblages further extends

  5. Multi-shot multi-channel diffusion data recovery using structured low-rank matrix completion

    CERN Document Server

    Mani, Merry; Kelley, Douglas; Magnotta, Vincent

    2016-01-01

    Purpose: To introduce a novel method for the recovery of multi-shot diffusion weighted (MS-DW) images from echo-planar imaging (EPI) acquisitions. Methods: Current EPI-based MS-DW reconstruction methods rely on the explicit estimation of the motion- induced phase maps to recover the unaliased images. In the new formulation, the k-space data of the unaliased DWI is recovered using a structured low-rank matrix completion scheme, which does not require explicit estimation of the phase maps. The structured matrix is obtained as the lifting of the multi-shot data. The smooth phase-modulations between shots manifest as null-space vectors of this matrix, which implies that the structured matrix is low-rank. The missing entries of the structured matrix are filled in using a nuclear-norm minimization algorithm subject to the data-consistency. The formulation enables the natural introduction of smoothness regularization, thus enabling implicit motion-compensated recovery of fully-sampled as well as under-sampled MS-DW ...

  6. Gating modifier toxins reveal a conserved structural motif in voltage-gated Ca2+ and K+ channels

    OpenAIRE

    Li-Smerin, Yingying; Swartz, Kenton J.

    1998-01-01

    Protein toxins from venomous animals exhibit remarkably specific and selective interactions with a wide variety of ion channels. Hanatoxin and grammotoxin are two related protein toxins found in the venom of the Chilean Rose Tarantula, Phrixotrichus spatulata. Hanatoxin inhibits voltage-gated K+ channels and grammotoxin inhibits voltage-gated Ca2+ channels. Both toxins inhibit their respective channels by interfering with normal operation of the voltage-dependent gating mechanism. The sequenc...

  7. Effect of grade-control structures at various stages of their destruction on bed sediments and local channel parameters

    Science.gov (United States)

    Galia, Tomáš; Škarpich, Václav; Hradecký, Jan; Přibyla, Zdeněk

    2016-01-01

    Grade-control structures (GCSs) represent the typical management of torrential streams, preventing massive bed erosion and bedload transport. The original and present geometric and sedimentary parameters of 18 GCSs at various stages of their destruction since the 1970s were evaluated to determine the relationship between the former and present-day components of the managed Mohelnice River (the western Carpathians, Czech Republic). The latest changes in the GCS geometry, related scour holes, and bed surface grain size of sedimentary wedges were caused by the 2010 flood event of 20-50 R.I. discharge. No relationship exists between the bed surface grain sizes and the present water drop or the present equilibrium channel slope of the sedimentary wedge. A significant downstream coarsening of the largest grain size percentile represented by D95 is detected through the sequence of GCSs. Also, statistically insignificant trends in downstream coarsening were observed for D16, D50, and D84 grain sizes. However, the investigated sequence is still passable for grain diameters up to 200 mm during high-magnitude floods similar to the 2010 event, as documented by the development of a confluent gravel bar downstream of the sequence. Bedload transport simulations provide the highest bedload transport rates for the initial stage of the uppermost studied channel reach without the presence of GCSs (30,000 kg min- 1 for Q50). Grade-control structures reconstruction in the 1970s significantly decreased transport rates (> 2000 kg min- 1 for Q50). Owing to the erosion of GCS crests and an increase in related equilibrium channel slope, damage on GCSs can lead to an increase in bedload transport intensity (13,000 kg min- 1 for Q50). Significant linear relationships exist among the present parameters of the scour holes (length of scour hole, maximum scour depth, and horizontal distance between the point of maximum depth and the GCS crest). A statistical significant power relationship exists

  8. Cost Structure, Customer Profitability, and Retention Implications of Self-Service Distribution Channels: Evidence from Customer Behavior in an Online Banking Channel

    OpenAIRE

    Dennis Campbell; Frances Frei

    2010-01-01

    This paper uses the context of online banking to investigate the consequences of using self-service distribution channels to alter customer interactions with the firm. Using a sample of retail banking customers observed over a 30-month period at a large U.S. bank, we test whether changes in service consumption, cost to serve, and customer profitability are associated with the adoption of online banking. We find that customer adoption of online banking is associated with (1) substitution, prim...

  9. Predictions of charged charmonium-like structures with hidden-charm and open-strange channel

    CERN Document Server

    Chen, Dian-Yong; Matsuki, Takayuki

    2013-01-01

    We propose the initial single chiral particle emission (ISChE) mechanism, with which the hidden-charm di-kaon decays of higher charmonia and charmonium-like states are studied. Calculating the distributions of differential decay width, we obtain the line shape of the $J/\\psi K^+$ invariant mass spectrum of $\\psi_i\\to J/\\psi K^+K^-$, where $\\psi_i=\\psi(4415), Y(4660)$, and $\\psi(4790)$. Our numerical results show that there exist enhancement structures with both hidden-charm and open-strange, which are near the $D\\bar{D}_s^*/D^*\\bar{D}_s$ and $D^*\\bar{D}_s^*/\\bar{D}^*{D}_s^*$ thresholds. These charged charmonium-like structures predicted in this paper can be accessible at future experiment, especially BESIII, BelleII and SuperB.

  10. Full Equations (FEQ) model for the solution of the full, dynamic equations of motion for one-dimensional unsteady flow in open channels and through control structures

    Science.gov (United States)

    Franz, Delbert D.; Melching, Charles S.

    1997-01-01

    accuracy and convergence of the numerical routines in the model are demonstrated for the case of laboratory measurements of unsteady flow in a sewer pipe. Verification of the routines in the model for field data on the Fox River in northeastern Illinois also is briefly discussed. The basic principles of unsteady-flow modeling and the relation between steady flow and unsteady flow are presented. Assumptions and the limitations of the model also are presented. The schematization of the stream system and the conversion of the physical characteristics of the stream reaches and a wide range of special features into function tables for model applications are described. The modified dynamic-wave equation used in FEQ for unsteady flow in curvilinear channels with drag on minor hydraulic structures and channel constrictions determined from an equivalent energy slope is developed. The matrix equation relating flows and depths at computational nodes throughout the stream system by the continuity (conservation of mass) and modified dynamic-wave equations is illustrated for four sequential examples. The solution of the matrix equation by Newton's method is discussed. Finally, the input for FEQ and the error messages and warnings issued are presented.

  11. Template-assembled melittin: structural and functional characterization of a designed, synthetic channel-forming protein.

    OpenAIRE

    PAWLAK, M.; Meseth, U; Dhanapal, B.; Mutter, M.; Vogel, H.

    1994-01-01

    Template-assembled proteins (TASPs) comprising 4 peptide blocks, each of either the natural melittin sequence (melittin-TASP) or of a truncated melittin sequence (amino acids 6-26, melittin6-26-TASP), C-terminally linked to a (linear or cyclic) 10-amino acid template were synthesized and characterized, structurally by CD, by fluorescence spectroscopy, and by monolayer experiments, and functionally, by electrical conductance measurements on planar bilayers and release experiments on dye-loaded...

  12. Structure of a toothed cetacean community around a tropical island (Mayotte, Mozambique Channel)

    OpenAIRE

    Kiszka, Jeremy; Ersts, Peter; Ridoux, Vincent

    2010-01-01

    International audience We describe the structure of a toothed cetacean community around the island of Mayotte (South-West Indian Ocean, 45°10'E, 12°50'S), using data collected from small boat-based surveys conducted between July 2004 and June 2006. In all, 16 odontocete species were recorded. Diversity (Shannon-Weaver index) was particularly high along the outer slope of the barrier reef. Patterns of spatial distribution underscore the existence of three main cetacean habitat types: the in...

  13. A field investigation of the basaltic ring structures of the Channeled Scabland and the relevance to Mars

    Science.gov (United States)

    Kestay, Laszlo P.; Jaeger, Windy L.

    2015-01-01

    The basaltic ring structure (BRS) is a class of peculiar features only reported in the Channeled Scabland of eastern Washington State. They have been suggested to be good analogs, however, for some circular features on Mars. BRSs are found where Pleistocene floods scoured the Columbia River Basin, stripping off the uppermost part of the Miocene Columbia River Basalt Group and exposing structures that were previously embedded in the lava. The “Odessa Craters,” near Odessa, WA, are 50–500-m-wide BRSs that are comprised of discontinuous, concentric outcrops of subvertically-jointed basalt and autointrusive dikes. Detailed field investigation of the Odessa Craters in planform and a cross-sectional exposure of a similar structure above Banks Lake, WA, lead us to propose that BRSs formed by concurrent phreatovolcanism and lava flow inflation. In this model, phreatovolcanic (a.k.a., “rootless”) cones formed on a relatively thin, active lava flow; the lava flow inflated around the cones, locally inverting topography; tensile stresses caused concentric fracturing of the lava crust; lava from within the molten interior of the flow exploited the fractures and buried the phreatovolcanic cones; and subsequent erosive floods excavated the structures. Another population of BRSs near Tokio Station, WA, consists of single-ringed, raised-rimmed structures that are smaller and more randomly distributed than the Odessa Craters. We find evidence for a phreatovolcanic component to the origin as well, and hypothesize that they are either flood-eroded phreatovolcanic cones or Odessa Crater-like BRSs. This work indicates that BRSs are not good analogs to the features on Mars because the martian features are found on the uneroded surfaces. Despite this, the now superseded concepts for BRS formation are useful for understanding the formation of the martian features.

  14. A near-peer teaching program designed, developed and delivered exclusively by recent medical graduates for final year medical students sitting the final objective structured clinical examination (OSCE

    Directory of Open Access Journals (Sweden)

    Sobowale Oluwaseun

    2011-03-01

    Full Text Available Abstract Background The General Medical Council states that teaching doctors and students is important for the care of patients. Our aim was to deliver a structured teaching program to final year medical students, evaluate the efficacy of teaching given by junior doctors and review the pertinent literature. Methods We developed a revision package for final year medical students sitting the Objective Structured Clinical Examination (OSCE. The package was created and delivered exclusively by recent medical graduates and consisted of lectures and small group seminars covering the core areas of medicine and surgery, with a focus on specific OSCE station examples. Students were asked to complete a feedback questionnaire during and immediately after the program. Results One hundred and eighteen completed feedback questionnaires were analysed. All participants stated that the content covered was relevant to their revision. 73.2% stated that junior doctors delivered teaching that is comparable to that of consultant - led teaching. 97.9% stated the revision course had a positive influence on their learning. Conclusions Our study showed that recent medical graduates are able to create and deliver a structured, formal revision program and provide a unique perspective to exam preparation that was very well received by our student cohort. The role of junior doctors teaching medical students in a formal structured environment is very valuable and should be encouraged.

  15. Attitudes towards a final repository for the spent nuclear fuel. Structure and causes

    International Nuclear Information System (INIS)

    This report presents the results of a questionnaire survey of attitudes towards a final repository for the spent nuclear fuel. The questionnaire was mailed to 3,000 persons. Participants were young and older people in Oskarshamn municipality and Oesthammar municipality as well as in the rest of the country. Fifty-one percent responded. The questionnaire included a large number of questions of possible relevance for understanding the structure of and reasons for the person's attitude towards a final repository. Questions concerning nuclear power were dealt with in a special section. Men were more positively disposed towards a repository than women, older people more than young. The gender differences are mainly attributable to the variation in attitude towards nuclear power and concern about nuclear accidents. In the case of older people, interest was also a factor. Young people were not as interested in the issue. The most important factor in determining the attitude towards a final repository was the benefit it was expected to bring to the municipality. Moral and emotional aspects were also important. Risk played a relatively subordinate role. Social aspects were very important: those who frequently spoke with people who were positively disposed tended to be positive themselves, and vice versa for those who were negative. This factor could explain some of the gender differences in attitude. Attitudes in Oskarshamn were slightly more positive than in Oesthammar, probably due to the fact that the residents in Oskarshamn had a greater sense of participation in the municipality's decision in the matter. Information from SKB was also found to be an important factor for the differences in attitude between the municipalities. Eight percentage points more people had received information in Oskarshamn than in Oesthammar. The difference may be small, but it exists and does appear to be of some importance. Attitudes in Oskarshamn and Oesthammar continued to be much more

  16. Structure-function of proteins interacting with the alpha1 pore-forming subunit of high voltage-activated calcium channel

    Directory of Open Access Journals (Sweden)

    Alan eNeely

    2014-06-01

    Full Text Available Openings of high-voltage-activated calcium channels lead to a transient increase in calcium concentration that in turn activate a plethora of cellular functions, including muscle contraction, secretion and gene transcription. To coordinate all these responses calcium channels form supramolecular assemblies containing effectors and regulatory proteins that couple calcium influx to the downstream signal cascades and to feedback elements. According to the original biochemical characterization of skeletal muscle Dihydropyridine receptors, high-voltage-activated calcium channels are multi-subunit protein complexes consisting of a pore-forming subunit (α1 associated with four additional polypeptide chains β, α2, δ and γ, often referred to as accessory subunits. Twenty-five years after the first purification of a high-voltage calcium channel, the concept of a flexible stoichiometry to expand the repertoire of mechanisms that regulate calcium channel influx has emerged. Several other proteins have been identified that associate directly with the α1-subunit, including calmodulin and multiple members of the small and large GTPase family. Some of these proteins only interact with a subset of α1-subunits and during specific stages of biogenesis. More strikingly, most of the α1-subunit interacting proteins, such as the β-subunit and small GTPases, regulate both gating and trafficking through a variety of mechanisms. Modulation of channel activity covers almost all biophysical properties of the channel. Likewise, regulation of the number of channels in the plasma membrane is performed by altering the release of the α1-subunit from the endoplasmic reticulum, by reducing its degradation or enhancing its recycling back to the cell surface. In this review, we discuss the structural basis, interplay and functional role of selected proteins that interact with the central pore-forming subunit of high-voltage-activated calcium channels.

  17. Legacy Morphologies: Channel Avulsions and Historical Engineering Structures Drive Form and Process in the Lower Yuba and Feather Rivers, California

    Science.gov (United States)

    James, L. A.; Singer, M. B.; Aalto, R.

    2008-12-01

    Geomorphic changes in the lower Yuba and Feather Rivers due to hydraulic mining provide a chance to study centennial-scale processes. Channel changes over 150 years were determined using channel-bank stratigraphy, geochemical signatures (total Hg, grain-size distributions, bulk geochemistry, fallout radionuclides, and Sr/Nd isotopes), and spatial analyses of high-resolution topographic data, historical maps, and aerial photos. Repeated avulsions and broad erosion/deposition patterns are shown, including a downstream shift in activity through time. In the 20th century, both rivers experienced deep main-channel incision and floodplain alluviation of natural levees and abandoned channels. Buried trees rooted in pre- mining soils indicate the Feather has not returned to pre-mining base levels below the Yuba confluence. Early engineering works controlled channel responses and recovery. For example, the Feather River avulsed into a channel dredged through Shanghai Bend (c.1907) so it now crosses resistant Quaternary alluvium over a 3-m knickpoint bench that could soon be breached. Moreover, levees and channelization near the Yuba-Feather confluence at Marysville (c.1905) narrowed and deepened flows, encouraging the bed incision noted by Gilbert. Effects of legacy sediment on channel processes are well known. Here, channel recovery was also constrained by channel morphologies engineered with boulder wing dams and revetment in the Yuba and channelization and levees in the Feather. The resulting bed incision reduces lateral connectivity between channels and floodplains and increases sediment conveyance. Historical and anthropogenic perspectives are essential to explaining channel dynamics at these scales. Unless models of channel and floodplain evolution recognize historical changes and engineering works, they may miss crucial components of geomorphic change and potential impacts downstream. In such systems, the historical dimension is essential to river management, water

  18. Development and application of a channelized Hotelling observer for DBT optimization on structured background test images with mass simulating targets

    Science.gov (United States)

    Petrov, Dimitar; Michielsen, Koen; Cockmartin, Lesley; Zhang, Gouzhi; Young, Kenneth; Marshall, Nicholas; Bosmans, Hilde

    2016-03-01

    Digital breast tomosynthesis (DBT) is a 3D mammography technique that promises better visualization of low contrast lesions than conventional 2D mammography. A wide range of parameters influence the diagnostic information in DBT images and a systematic means of DBT system optimization is needed. The gold standard for image quality assessment is to perform a human observer experiment with experienced readers. Using human observers for optimization is time consuming and not feasible for the large parameter space of DBT. Our goal was to develop a model observer (MO) that can predict human reading performance for standard detection tasks of target objects within a structured phantom and subsequently apply it in a first comparative study. The phantom consists of an acrylic semi-cylindrical container with acrylic spheres of different sizes and the remaining space filled with water. Three types of lesions were included: 3D printed spiculated and non-spiculated mass lesions along with calcification groups. The images of the two mass lesion types were reconstructed with 3 different reconstruction methods (FBP, FBP with SRSAR, MLTRpr) and read by human readers. A Channelized Hotelling model observer was created for the non-spiculated lesion detection task using five Laguerre-Gauss channels, tuned for better performance. For the non-spiculated mass lesions a linear relation between the MO and human observer results was found, with correlation coefficients of 0.956 for standard FBP, 0.998 for FBP with SRSAR and 0.940 for MLTRpr. Both the MO and human observer percentage correct results for the spiculated masses were close to 100%, and showed no difference from each other for every reconstruction algorithm.

  19. Analytical model and new structure of the enhancement-mode polarization-junction HEMT with vertical conduction channel

    Science.gov (United States)

    Yang, Chao; Xiong, Jiayun; Wei, Jie; Wu, Junfeng; Peng, Fu; Deng, Siyu; Zhang, Bo; Luo, Xiaorong

    2016-04-01

    A novel enhancement-mode (E-mode) polarization-junction HEMT with vertical conduction channel (PVC-HEMT) is proposed, and its analytical model for threshold voltage (Vth) is presented. It has two features: one is GaN/AlGaN/GaN double hetero-structure, the other is that source and drain locate at the same side of trench-type MOS gate (T-gate), and the source contacts with the T-gate, which forms vertical conduction channel (VC). The 2-D hole gas (2-DHG) and 2-D electron gas (2-DEG) are formed at the GaN-top/AlGaN and AlGaN/GaN-buffer interface, respectively, forming the polarization-junction. First, the E-mode operation is realized because 2-DHG under the source prevents the electrons injecting from source to 2-DEG, breaking through the conventional E-mode method by depleting 2-DEG under the gate. Second, a uniform electric field (E-field) distribution is achieved due to the assisted depletion effect by polarization-junction. Third, the source reduces the E-field peak at the T-gate side and modulates the E-field distribution. The breakdown voltage (BV) of PVC-HEMT is 705 V and specific ON-resistance (RON,sp) is 1.18 mΩ cm2. Compared with conventional HEMT (C-HEMT), PVC-HEMT has a smaller size due to the special location of the source and T-gate. An analytic threshold voltage model is presented and the analytical results agree well with the simulated results.

  20. Analysis of a grid window structure for RF cavities in a Muon cooling channel

    International Nuclear Information System (INIS)

    We report on the electromagnetic and thermal analysis of a grid window structure for high gradient, low frequency RF cavities. Windows may be utilized to close the beam iris and increase shunt impedance of closed-cell RF cavities. This work complements previous work presented for windows made of solid beryllium foil. An electromagnetic and thermal analysis of the thin wall tubes in a grid pattern was conducted using both MAFIA4 and ANSYS finite element analyses. The results from both codes agreed well for a variety of grid configurations and spacing. The grid configuration where the crossing tubes touched was found to have acceptable E-Fields and H-Fields performance. The thermal profiles for the grid will also be shown to determine a viable cooling profile

  1. Solution structure of the N-terminal A domain of the human voltage-gated Ca2+channel beta4a subunit.

    Science.gov (United States)

    Vendel, Andrew C; Rithner, Christopher D; Lyons, Barbara A; Horne, William A

    2006-02-01

    Ca2+ channel beta subunits regulate trafficking and gating (opening and closing) of voltage-dependent Ca2+ channel alpha1 subunits. Based on primary sequence comparisons, they are thought to be modular structures composed of five domains (A-E) that are related to the large family of membrane associated guanylate-kinase (MAGUK) proteins. The crystal structures of the beta subunit core, B-D, domains have recently been reported; however, very little is known about the structures of the A and E domains. The N-terminal A domain is a hypervariable region that differs among the four subtypes of Ca2+ channel beta subunits (beta1-beta4). Furthermore, this domain undergoes alternative splicing to create multiple N-terminal structures within a given gene class that have distinct effects on gating. We have solved the solution structure of the A domain of the human beta4a subunit, a splice variant that we have shown previously to have alpha1 subunit subtype-specific effects on Ca2+ channel trafficking and gating. PMID:16385006

  2. Performance improvement with a combined scheme of rapid thermal annealing and multi-channel structure for poly-Si TFTs with various device dimensions

    International Nuclear Information System (INIS)

    This study presents a combined scheme of rapid thermal annealing (RTA) and multi-channel structure for improving the performance of polycrystalline silicon (poly-Si) thin film transistors (TFTs). Results show that RTA treatment can improve device performance by decreasing the number of in-grain defects and improving the quality of the gate oxide. The multi-channel structure improves the electrical characteristics of the poly-Si TFTs by decreasing the number of grain boundary defects. Thus, the combined scheme can effectively reduce defect states and improve the gate-oxide's quality simultaneously, resulting in a significant improvement in the performance of poly-Si TFTs. In addition, the performance improvement is particularly apparent for the TFTs with a thinner gate oxide and smaller channel length. Therefore, the proposed scheme is a good candidate for improving the electrical characteristics of TFTs for use in small-to-medium size displays.

  3. Structure release of silicon micro-channel based on wet etching

    Science.gov (United States)

    Cui, Dandan; Wang, Guozheng; Yang, Jikai; Li, Haibin; DuanMu, Qingduo

    2015-11-01

    Based on wet etching theory, the silicon microchannel structure after electrochemical etching was released in TMAH solution to obtain the through-hole microchannel. The silicon wafer with the different resistivity was selected as the substrate of microchannel plate, the TMAH solution was selected in mass concentration of 28.5wt%, and the SiO2 passivation layer with the thickness of 200nm was prepared by thermal oxidation for protection of side-wall of microchannel. Contrary to the problem encountered in wet etching, Firstly, the corrosion characteristics of silicon and SiO2 thin film in TMAH solution were investigated, respectively. In addition, the effects of the pH values of TMAH solution on corrosion characteristics in microstructure releasing of silicon microchannel were studied and analyzed. The experiments show that the silicon wafer with high resistivity can be easily etched, the etching rate of SiO2 film in TMAH is uniform, and adjusting the pH value of etching solution to make it constant during etching can effectively increase the corrosion rate and decrease the surface roughness of samples.

  4. Impact of processing parameters on the LTCC channels geometry*

    Directory of Open Access Journals (Sweden)

    Macioszczyk Jan

    2015-12-01

    Full Text Available A great advantage of Low Temperature Co-fired Ceramics (LTCC yields the possibility of channel and air cavity fabrication. Such empty spaces have numerous applications, for example, in microfluidics, microwave techniques and integrated packaging. However, improper geometry of these structures can degrade the performance of the final device. The processing parameters recommended by the LTCC tape supplier are relevant for the production of multilayer circuits but not surface embedded channels and/or cavities. Thus, it is important to examine which factors of the fabrication process are the most significant. In our study, special attention has been paid to the geometric performance of the channel structure resulting from the applied processing parameters. Laser cutting parameters were checked to obtain the structures with great fidelity. The impact of an isostatic lamination on the quality of the final structure was analyzed. The influence of pressure and temperature of the lamination process on the channel geometry and tape shrinkage were examined. The performed experiments showed that some improvements in channel/cavity geometry may be achieved by optimizing the processing procedures. The microscopic observations combined with the Analysis of Variance (ANOVA showed which combinations of the processing parameters are the best for achieving a channel/cavity structure with the desired geometry.

  5. Quantum Channels With Memory

    International Nuclear Information System (INIS)

    Quantum memory channels represent a very general, yet simple and comprehensible model for causal processes. As such they have attracted considerable research interest, mostly aimed on their transfer capabilities and structure properties. Most notably it was shown that memory channels can be implemented via physically naturally motivated collision models. We also define the concept of repeatable channels and show that only unital channels can be implemented repeat ably with pure memory channels. In the special case of qubit channels we also show that every unital qubit channel has a repeatable implementation. We also briefly explore the possibilities of stroboscopical simulation of channels and show that all random unitary channels can be stroboscopically simulated. Particularly in qubit case, all indivisible qubit channels are also random unitary, hence for qubit all indivisible channels can be stroboscopically simulated. Memory channels also naturally capture the framework of correlated experiments. We develop methods to gather and interpret data obtained in such setting and in detail examine the two qubit case. We also show that for control unitary interactions the measured data will never contradict a simple unitary evolution. Thus no memory effects can be spotted then. (author)

  6. On the structural basis for ionic selectivity among Na+, K+, and Ca2+ in the voltage-gated sodium channel.

    OpenAIRE

    Favre, I; Moczydlowski, E; Schild, L

    1996-01-01

    Voltage-sensitive sodium channels and calcium channels are homologous proteins with distinctly different selectivity for permeation of inorganic cations. This difference in function is specified by amino acid residues located within P-region segments that link presumed transmembrane elements S5 and S6 in each of four repetitive Domains I, II, III, and IV. By analyzing the selective permeability of Na+, K+, and Ca2+ in various mutants of the mu 1 rat muscle sodium channel, the results in this ...

  7. Nano-Structured Mesoporous Silica Wires with Intra-Wire Lamellae via Evaporation-Induced Self-Assembly in Space-Confined Channels

    Energy Technology Data Exchange (ETDEWEB)

    Hu, Michael Z. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Shi, Donglu [Univ. of Cincinnati, OH (United States); Blom, Douglas Allen [Univ. of South Carolina, Columbia, SC (United States)

    2014-04-06

    Evaporation-induced self-assembly (EISA) of silica sol-gel ethanol-water solution mixtures with block-copolymer were studied inside uniform micro/nano channels. Nano-structured mesoporous silica wires, with various intra-wire self-assembly structures including lamellae, were prepared via EISA process but in space-confined channels with the diameter ranging from 50 nm to 200 nm. Membranes made of anodized aluminum oxide (AAO) and track-etched polycarbonate (EPC) were utilized as the arrays of space-confined channels (i.e., 50, 100, and 200-nm EPC and 200-nm AAO) for infiltration and drying of mixture solutions; these substrate membranes were submerged in mixture solutions consisting of a silica precursor, a structure-directing agent, ethanol, and water. After the substrate channels were filled with the solution under vacuum impregnation, the membrane was removed from the solution and dried in air. The silica precursor used was tetra-ethyl othosilicate (TEOS), and the structure-directing agent employed was triblock copolymer Pluronic-123 (P123). It was found that the formation of the mesoporous nanostructures in silica wires within uniform channels were significantly affected by the synthesis conditions including (1) pre-assemble TEOS aging time, (2) the evaporation rate during the vacuum impregnation, and (3) the air-dry temperature. The obtained intra-wire structures, including 2D-hexagonal rods and lamellae, were studied by scanning transmission electron microscopy (STEM). A steric hindrance effect seems to explain well the observed polymer-silica mesophase formation tailored by TEOS aging time. The evaporation effect, air-drying effect, and AAO-vs-EPC substrate effect on the mesoporous structure of the formed silica wires were also presented and discussed.

  8. Source-Coupled, N-Channel, JFET-Based Digital Logic Gate Structure Using Resistive Level Shifters

    Science.gov (United States)

    Krasowski, Michael J.

    2011-01-01

    A circuit topography is used to create usable, digital logic gates using N (negatively doped) channel junction field effect transistors (JFETs), load resistors, level shifting resistors, and supply rails whose values are based on the DC parametric distributions of these JFETs. This method has direct application to the current state-of-the-art in high-temperature (300 to 500 C and higher) silicon carbide (SiC) device production, and defines an adaptation to the logic gate described in U.S. Patent 7,688,117 in that, by removing the level shifter from the output of the gate structure described in the patent (and applying it to the input of the same gate), a source-coupled gate topography is created. This structure allows for the construction AND/OR (sum of products) arrays that use far fewer transistors and resistors than the same array as constructed from the gates described in the aforementioned patent. This plays a central role when large multiplexer constructs are necessary; for example, as in the construction of memory. This innovation moves the resistive level shifter from the output of the basic gate structure to the front as if the input is now configured as what would be the output of the preceding gate, wherein the output is the two level shifting resistors. The output of this innovation can now be realized as the lone follower transistor with its source node as the gate output. Additionally, one may leave intact the resistive level shifter on the new gate topography. A source-coupled to direct-coupled logic translator will be the result.

  9. Compound Wiretap Channels

    Directory of Open Access Journals (Sweden)

    Shlomo Shamai (Shitz

    2009-01-01

    Full Text Available This paper considers the compound wiretap channel, which generalizes Wyner's wiretap model to allow the channels to the (legitimate receiver and to the eavesdropper to take a number of possible states. No matter which states occur, the transmitter guarantees that the receiver decodes its message and that the eavesdropper is kept in full ignorance about the message. The compound wiretap channel can also be viewed as a multicast channel with multiple eavesdroppers, in which the transmitter sends information to all receivers and keeps the information secret from all eavesdroppers. For the discrete memoryless channel, lower and upper bounds on the secrecy capacity are derived. The secrecy capacity is established for the degraded channel and the semideterministic channel with one receiver. The parallel Gaussian channel is further studied. The secrecy capacity and the secrecy degree of freedom (s.d.o.f. are derived for the degraded case with one receiver. Schemes to achieve the s.d.o.f. for the case with two receivers and two eavesdroppers are constructed to demonstrate the necessity of a prefix channel in encoder design. Finally, the multi-antenna (i.e., MIMO compound wiretap channel is studied. The secrecy capacity is established for the degraded case and an achievable s.d.o.f. is given for the general case.

  10. Compound Wiretap Channels

    Directory of Open Access Journals (Sweden)

    Kramer Gerhard

    2009-01-01

    Full Text Available Abstract This paper considers the compound wiretap channel, which generalizes Wyner's wiretap model to allow the channels to the (legitimate receiver and to the eavesdropper to take a number of possible states. No matter which states occur, the transmitter guarantees that the receiver decodes its message and that the eavesdropper is kept in full ignorance about the message. The compound wiretap channel can also be viewed as a multicast channel with multiple eavesdroppers, in which the transmitter sends information to all receivers and keeps the information secret from all eavesdroppers. For the discrete memoryless channel, lower and upper bounds on the secrecy capacity are derived. The secrecy capacity is established for the degraded channel and the semideterministic channel with one receiver. The parallel Gaussian channel is further studied. The secrecy capacity and the secrecy degree of freedom ( are derived for the degraded case with one receiver. Schemes to achieve the for the case with two receivers and two eavesdroppers are constructed to demonstrate the necessity of a prefix channel in encoder design. Finally, the multi-antenna (i.e., MIMO compound wiretap channel is studied. The secrecy capacity is established for the degraded case and an achievable is given for the general case.

  11. The structure of zetekitoxin AB, a saxitoxin analog from the Panamanian golden frog Atelopus zeteki: A potent sodium-channel blocker

    OpenAIRE

    Yotsu-Yamashita, Mari; Yong H Kim; Dudley, Samuel C.; Choudhary, Gaurav; Pfahnl, Arnold; Oshima, Yasukatsu; Daly, John W.

    2004-01-01

    Bufonid anurans of the genus Atelopus contain both steroidal bufadienolides and various guanidinium alkaloids of the tetrodotoxin class. The former inhibit sodium-potassium ATPases, whereas the latter block voltage-dependent sodium channels. The structure of one guanidinium alkaloid, zetekitoxin AB, has remained a mystery for over 30 years. The structure of this alkaloid now has been investigated with a sample of ≈0.3 mg, purified from extracts obtained decades ago from the Panamanian golden ...

  12. Energy bands structure and Bloch functions in the planar channeling model with the Kronig-Penney potential

    International Nuclear Information System (INIS)

    The motion of the charged particle in a one-dimensional periodic potential of the Kronig-Penney type is considered. The energy band structure, Bloch wave functions (BWF) in coordinate and momentum representation are investigated in detail. Two sharply distinguished groups of states, i.e. below-the-barrier and above-the-barrier, are extracted, and the role of both positively and negatively charged particles in the channeling is explained. It is shown that only with use of a dispersion equation form one can obtain the information on the symmetry properties of the BWF at the edges of energy bands. The estimate of the corresponding regions of the edge coherence in the Brillouin zone is given. In above-the-barrier case the nontrivial effect of parity interchange violation of BWF at the edges of energy bands, connected with the nullification of the reflection coefficient either from the single barrier or well is found. Oscillation behaviour of both allowed and forbidden band widths is revealed. The analytical results for different values of the parameters are illustrated by computer calculations

  13. Game Theoretic Analysis of Carbon Emission Abatement in Fashion Supply Chains Considering Vertical Incentives and Channel Structures

    Directory of Open Access Journals (Sweden)

    Longfei He

    2015-04-01

    Full Text Available We study an emission-dependent dyadic fashion supply chain made up of a supplier and a manufacturer, both of which can reduce their own component/product emissions to serve the carbon-footprint sensitive consumers. With Carbon Tax regulation, we consider four scenarios resulting from two ways in form of adopting transfer price contract and/or introducing third-party emission-reduction service (TPERS to enhance the efficiency of systematic emission reductions. We refine four models from these corresponding scenarios, which in turn constitute a decision-making framework composed of determining vertical incentives and choosing supply chain structures. By exploiting Stackelberg games in all models, we compare their emission reduction efficiencies and profitability for each pair of settings. Theoretic analysis and numerical studies show that adopting vertical transfer payment schemes can definitely benefit channel carbon footprint reduction and Pareto improvement of supply chain profitability, regardless of whether the emission-reduction service exists or not. However, whether introducing TPERS or not is heavily depending on systematic parameters when the transfer payment incentive is adopted there. We also provide insights on the sensitivity of carbon tax parameters with respect to the supply chain performance, overall carbon emission reduction, vertical incentive and TPERS adopting decision-makings.

  14. Global structural changes of an ion channel during its gating are followed by ion mobility mass spectrometry

    NARCIS (Netherlands)

    Konijnenberg, Albert; Yilmaz, Duygu; Ingólfsson, Helgi I; Dimitrova, Anna; Marrink, Siewert J; Li, Zhuolun; Vénien-Bryan, Catherine; Sobott, Frank; Koçer, Armağan

    2014-01-01

    Mechanosensitive ion channels are sensors probing membrane tension in all species; despite their importance and vital role in many cell functions, their gating mechanism remains to be elucidated. Here, we determined the conditions for releasing intact mechanosensitive channel of large conductance (M

  15. Development of the Physical Structure of a Multi-Channel GNSS Signal Detector for Autonomous Coordination and Time Support of Artificial Earth Satellites

    Science.gov (United States)

    Shkol'nyi, V. N.; Suntsov, S. B.; Karaban, V. M.; Dmitriev, V. D.; Sheerman, F. I.

    2015-11-01

    Physical structure of a multi-channel detector of signals of global navigation satellite systems for autonomous coordination and time support of spacecrafts independent from the terrestrial infrastructure is analyzed. The parameters of multi-channel detector components are determined by mathematical modeling to achieve worldclass tactical and technical specifications. Technologies based on domestic 0.15 μm GaAs pHEMT (Closed JSC "Mikran," Tomsk) and 0.18 μm SiGe BiCMOS (JSC Research Institute of Molecular Electronics and "Mikron" Plant, Zelenograd) are taken for subsequent practical implementation in monolithic chip components of a navigation detector.

  16. Transient radiation effects in GaAs devices: Bulk conduction and channel modulation phenomena in D-MESFET, E-JFET, AND n+-SI-n+ structures

    International Nuclear Information System (INIS)

    Transient radiation effects in GaAs devices have been studied using localized electron-beam pulses. Distinct response mechanisms are described and compared for different device structures of similar dimension, fabricated by ion-implantation into undoped semi-insulating GaAs substrates. An n-channel transient conduction increase with non-exponential recovery and millisecond time scale is quantitatively analyzed using a phenomenological model which incorporates the photovoltaic effect and charge separation at the channel-substrate junction. Good agreement is found using reasonable values for junction capacitance and recombination current. Slow emission of trapped positive charge from deep levels is not required to explain the observed recovery dynamics

  17. RFI channels

    Science.gov (United States)

    Mceliece, R. J.

    1980-01-01

    A class of channel models is presented which exhibit varying burst error severity much like channels encountered in practice. An information-theoretic analysis of these channel models is made, and conclusions are drawn that may aid in the design of coded communication systems for realistic noisy channels.

  18. Structural and functional correlation of the trypsin-digested Ca2+ release channel of skeletal muscle sarcoplasmic reticulum.

    Science.gov (United States)

    Meissner, G; Rousseau, E; Lai, F A

    1989-01-25

    The effect of trypsin digestion on the (i) fragmentation pattern, (ii) activity, (iii) [3H]ryanodine binding, and (iv) sedimentation behavior of the skeletal sarcoplasmic reticulum (SR) ryanodine receptor-Ca2+ release channel complex has been examined. Mild tryptic digestion of heavy, junctional-derived SR vesicles resulted in the rapid disappearance of the high molecular weight (Mr approximately 400,000) Ca2+ release channel protein on sodium dodecyl sulfate gels and appearance of bands of lower Mr upon immunoblot analysis, without an appreciable effect on [3H]ryanodine binding or the apparent S value (30 S) of the 3-[3-cholamidopropyl)dimethylammonio]-1-propanesulfonate (Chaps)-solubilized channel complex. Further degradation to bands of Mr greater than 70,000 on immunoblots correlated with a reduction of channel size from 30 S to 10-15 S and loss of high affinity [3H]ryanodine binding to the trypsinized receptor, while low affinity [3H]ryanodine binding and [3H]ryanodine bound prior to digestion were retained. Parallel 45Ca2+ efflux measurements also indicated retention of the Ca2+, Mg2+, and ATP regulatory sites, although Ca2+-induced 45Ca2+ release rates were changed. In planar lipid bilayer-single channel measurements, addition of trypsin to the cytoplasmic side of the high conductance (100 pS in 50 mM Ca2+), Ca2+-activated SR Ca2+ channel initially increased the fraction of channel open time and was followed by a complete and irreversible loss of channel activity. Trypsin did not change the unitary conductance, and was without effect on single channel activity when added to the lumenal side of the channel. PMID:2536370

  19. Structural and functional divergence of two fish aquaporin-1 water channels following teleost-specific gene duplication

    Directory of Open Access Journals (Sweden)

    Raldúa Demetrio

    2008-09-01

    Full Text Available Abstract Background Teleost radiation in the oceans required specific physiological adaptations in eggs and early embryos to survive in the hyper-osmotic seawater. Investigating the evolution of aquaporins (AQPs in these vertebrates should help to elucidate how mechanisms for water homeostasis evolved. The marine teleost gilthead sea bream (Sparus aurata has a mammalian aquaporin-1 (AQP1-related channel, termed AQP1o, with a specialized physiological role in mediating egg hydration. However, teleosts have an additional AQP isoform structurally more similar to AQP1, though its relationship with AQP1o is unclear. Results By using phylogenetic and genomic analyses we show here that teleosts, unlike tetrapods, have two closely linked AQP1 paralogous genes, termed aqp1a and aqp1b (formerly AQP1o. In marine teleosts that produce hydrated eggs, aqp1b is highly expressed in the ovary, whereas in freshwater species that produce non-hydrated eggs, aqp1b has a completely different expression pattern or is not found in the genome. Both Aqp1a and Aqp1b are functional water-selective channels when expressed in Xenopus laevis oocytes. However, expression of chimeric and mutated proteins in oocytes revealed that the sea bream Aqp1b C-terminus, unlike that of Aqp1a, contains specific residues involved in the control of Aqp1b intracellular trafficking through phosphorylation-independent and -dependent mechanisms. Conclusion We propose that 1 Aqp1a and Aqp1b are encoded by distinct genes that probably originated specifically in the teleost lineage by duplication of a common ancestor soon after divergence from tetrapods, 2 Aqp1b possibly represents a neofunctionalized AQP adapted to oocytes of marine and catadromous teleosts, thereby contributing to a water reservoir in eggs and early embryos that increases their survival in the ocean, and 3 Aqp1b independently acquired regulatory domains in the cytoplasmatic C-terminal tail for the specific control of Aqp1b

  20. Study of the antiproton-proton annihilations into six body final states at 750 MeV/c and channels with associated production of K K

    International Nuclear Information System (INIS)

    In this work we present an analysis of the antiproton-proton annihilations into six body final states with strange particle production at 750 HeV/c. It is shown that these final states are dominated at this energy by resonance production in quasi-three body Intermediate states. We determine the scattering length of the resonanceδ+ (970) which is found to be compatible with earlier determinations. fe also study the production of the resonance ω(783) associated to the system K0K0 in the five body final state and determine Its polarization, which 1s not compatible with that obtained for the p0(770) in the final state K0K0 p0. The amplitudes should be equal in a quark rearrangement model. (Author) 11 refs

  1. A sodium channel inhibitor ISTX-I with a novel structure provides a new hint at the evolutionary link between two toxin folds.

    Science.gov (United States)

    Rong, Mingqiang; Liu, Jiangxin; Zhang, Meilin; Wang, Gan; Zhao, Gang; Wang, Guodong; Zhang, Yaping; Hu, Kaifeng; Lai, Ren

    2016-01-01

    Members of arachnida, such as spiders and scorpions, commonly produce venom with specialized venom glands, paralyzing their prey with neurotoxins that specifically target ion channels. Two well-studied motifs, the disulfide-directed hairpin (DDH) and the inhibitor cystine knot motif (ICK), are both found in scorpion and spider toxins. As arachnids, ticks inject a neurotoxin-containing cocktail from their salivary glands into the host to acquire a blood meal, but peptide toxins acting on ion channels have not been observed in ticks. Here, a new neurotoxin (ISTX-I) that acts on sodium channels was identified from the hard tick Ixodes scapularis and characterized. ISTX-I exhibits a potent inhibitory function with an IC50 of 1.6 μM for sodium channel Nav1.7 but not other sodium channel subtypes. ISTX-I adopts a novel structural fold and is distinct from the canonical ICK motif. Analysis of the ISTX-I, DDH and ICK motifs reveals that the new ISTX-I motif might be an intermediate scaffold between DDH and ICK, and ISTX-I is a clue to the evolutionary link between the DDH and ICK motifs. These results provide a glimpse into the convergent evolution of neurotoxins from predatory and blood-sucking arthropods. PMID:27407029

  2. Mechanosensitive ion channels

    Directory of Open Access Journals (Sweden)

    Ken Takahashi

    2016-01-01

    Full Text Available Cell surface receptors are involved in numerous important biological processes including embryogenesis, tissue differentiation, and cellular homeostasis. Among them, mechanosensitive ion channels play an essential role in cellular functions of every cell including neurons, cardiomyocytes, and osteocytes. Here, we discuss types, roles, structures, and biophysical factors that affect the functions of mechanosensitive ion channels.

  3. Athermalized channeled spectropolarimeter enhancement.

    Energy Technology Data Exchange (ETDEWEB)

    Jones, Julia Craven; Way, Brandyn Michael; Mercier, Jeffrey Alan; Hunt, Jeffery P.

    2013-09-01

    Channeled spectropolarimetry can measure the complete polarization state of light as a function of wavelength. Typically, a channeled spectropolarimeter uses high order retarders made of uniaxial crystal to amplitude modulate the measured spectrum with the spectrally-dependent Stokes polarization information. A primary limitation of conventional channeled spectropolarimeters is related to the thermal variability of the retarders. Thermal variation often forces frequent system recalibration, particularly for field deployed systems. However, implementing thermally stable retarders, made of biaxial crystal, results in an athermal channeled spectropolarimeter that relieves the need for frequent recalibration. This report presents experimental results for an anthermalized channeled spectropolarimeter prototype produced using potassium titanyl phosphate. The results of this prototype are compared to the current thermal stabilization state of the art. Finally, the application of the technique to the thermal infrared is studied, and the athermalization concept is applied to an infrared imaging spectropolarimeter design.

  4. Enhancement of nondestructive evaluation techniques for magnetic and nonmagnetic structural components (Final report for doctoral fellowship)

    International Nuclear Information System (INIS)

    In this report, research works performed in the Structural Safety Engineering Group of OEC/JNC are summarized as the final report of the doctoral fellowship. The main objective of this study is for the enhancement of the nondestructive evaluation techniques for structural components of both magnetic and nonmagnetic material. Studies in three topics have been carried out aiming at the quantitative evaluation of crack with the eddy current testing and the validation of a natural magnetic field based NDE method for detecting mechanical damages in a paramagnetic material. In the first part of the study, an approach to the reconstruction of the natural crack was proposed and implemented with an idealized crack model for its validation. In the second part, the correlation of the natural magnetization and the mechanical damages in the SUS304 stainless steel was investigated by using an experimental approach. In part 3, an inverse method of the measured magnetic fields is proposed for the reconstruction of magnetic charges in the inspected material by using an optimization method and wavelet. As the first work, an approach to the reconstruction of an idealized natural crack of non-vanishing conductivity is proposed with use of signals of eddy current testing. Two numerical models are introduced at first for modeling the natural crack in order to represented it with a set of crack parameters. A method for the rapid prediction of the eddy current testing signals coming from these idealized cracks is given then by extending a knowledge based fast forward solver to the case of a non-vanishing conductivity. Based on this fast forward solver, the inverse algorithm of conjugate gradient method is updated to identify the crack parameters. Several examples are presented finally as a validation of the proposed strategy. The results show that both the two numerical models can give reasonable reconstruction results for signal of low noise. The model concerning the touch of crack

  5. Epithelial sodium channel (ENaC) family: Phylogeny, structure-function, tissue distribution, and associated inherited diseases.

    Science.gov (United States)

    Hanukoglu, Israel; Hanukoglu, Aaron

    2016-04-01

    The epithelial sodium channel (ENaC) is composed of three homologous subunits and allows the flow of Na(+) ions across high resistance epithelia, maintaining body salt and water homeostasis. ENaC dependent reabsorption of Na(+) in the kidney tubules regulates extracellular fluid (ECF) volume and blood pressure by modulating osmolarity. In multi-ciliated cells, ENaC is located in cilia and plays an essential role in the regulation of epithelial surface liquid volume necessary for cilial transport of mucus and gametes in the respiratory and reproductive tracts respectively. The subunits that form ENaC (named as alpha, beta, gamma and delta, encoded by genes SCNN1A, SCNN1B, SCNN1G, and SCNN1D) are members of the ENaC/Degenerin superfamily. The earliest appearance of ENaC orthologs is in the genomes of the most ancient vertebrate taxon, Cyclostomata (jawless vertebrates) including lampreys, followed by earliest representatives of Gnathostomata (jawed vertebrates) including cartilaginous sharks. Among Euteleostomi (bony vertebrates), Actinopterygii (ray finned-fishes) branch has lost ENaC genes. Yet, most animals in the Sarcopterygii (lobe-finned fish) branch including Tetrapoda, amphibians and amniotes (lizards, crocodiles, birds, and mammals), have four ENaC paralogs. We compared the sequences of ENaC orthologs from 20 species and established criteria for the identification of ENaC orthologs and paralogs, and their distinction from other members of the ENaC/Degenerin superfamily, especially ASIC family. Differences between ENaCs and ASICs are summarized in view of their physiological functions and tissue distributions. Structural motifs that are conserved throughout vertebrate ENaCs are highlighted. We also present a comparative overview of the genotype-phenotype relationships in inherited diseases associated with ENaC mutations, including multisystem pseudohypoaldosteronism (PHA1B), Liddle syndrome, cystic fibrosis-like disease and essential hypertension. PMID

  6. DMT of weighted Parallel Channels: Application to Broadcast Channel

    CERN Document Server

    Mroueh, Lina; Othman, Ghaya Rekaya-Ben; Belfiore, Jean-Claude

    2008-01-01

    In a broadcast channel with random packet arrival and transmission queues, the stability of the system is achieved by maximizing a weighted sum rate capacity with suitable weights that depend on the queue size. The weighted sum rate capacity using Dirty Paper Coding (DPC) and Zero Forcing (ZF) is asymptotically equivalent to the weighted sum capacity over parallel single-channels. In this paper, we study the Diversity Multiplexing Tradeoff (DMT) of the fading broadcast channel under a fixed weighted sum rate capacity constraint. The DMT of both identical and different parallel weighted MISO channels is first derived. Finally, we deduce the DMT of a broadcast channel using DPC and ZF precoders.

  7. Structural evolution of trimesic acid (TMA)/Zn2 + ion network on Au(111) to final structure of (10√3 × 10√3)

    Science.gov (United States)

    Kim, Jandee; Lee, Jaesung; Rhee, Choong Kyun

    2016-02-01

    Presented is a scanning tunneling microscopy (STM) study of structural evolution of TMA/Zn2 + ion network on Au(111) to the final structure of (10√3 × 10√3) during solution phase post-modification of pristine trimesic acid (TMA) network of a (5√3 × 5√3) structure with Zn2 + ions. Coordination of Zn2 + ions into adsorbed TMA molecules transforms crown-like TMA hexamers in pristine TMA network to chevron pairs in TMA/Zn2 + ion network. Two ordered transient structures of TMA/Zn2 + ion network were observed. One is a (5√7 × 5√7) structure consisting of Zn2 + ion-containing chevron pairs and Zn2 + ion-free TMA dimers. The other is a (5√39 × 5√21) structure made of chevron pairs and chevron-pair-missing sites. An STM image showing domains of different stages of crystallization of chevron pairs demonstrates that the TMA/Zn2 + network before reaching to the final one is quite dynamic. The observed structural evolution of the TMA/Zn2 + ion network is discussed in terms of modification of configurations of adsorbed TMA as accommodating Zn2 + ions and re-ordering of Zn2 + ion-containing chevron pairs.

  8. Hydrothermal synthesis and characteristics of 3-D hydrated bismuth oxalate coordination polymers with open-channel structure

    International Nuclear Information System (INIS)

    Two new 3-D porous bismuth coordination polymers, (C5NH6)2[Bi2(H2O)2(C2O4)4].2H2O 1 and (NH4)[Bi(C2O4)2].3H2O 2, have been hydrothermally synthesized and characterized by single-crystal X-ray diffraction. Compound 1 crystallizes in the monoclinic symmetry, P21/c space group with a=10.378(2) A, b=17.285(3) A, c=16.563(5) A, α=90 deg., β=119.66(2) deg., γ=90 deg., V=2581.8(10) A3, Z=4, R1=0.0355 and wR2=0.0658 for unique 4713 reflections I >2σ(I). Compound 2 crystallizes in the tetragonal symmetry, I41/amd space group with a=11.7026(17) A, b=11.7026(17) A, c=9.2233(18) A, α=90 deg., β=90 deg., γ=90 deg., V=1263.1(4) A3, Z=32, R1=0.0208 and wR2=0.0518 for unique 359 reflections I> 2σ(I). Compounds 1 and 2 are 3-D open-framework structures with a 66 uniform net, which consist of honeycomb-like layers connected to each other by oxalate units. While different guest molecules fill in their cavities of honeycomb-like layers, study of ultrasonic treatment on 2 indicates the replacement of NH4+ by K+ on potassium ion exchange. Thermogravimetric analysis indicates that the open-channel frameworks are thermally stable up to 200 deg. C, and other characterizations are also described by elemental analysis, IR and ultraviolet-visible diffuse reflectionintegral spectrum (UV-Vis DRIS). - Graphical abstract: Two novel 3-D extended porous coordination polymers have been synthesized by hydrothermal method. Both compounds are 3-D open-framework structures with a 66 uniform net, which consist of honeycomb-like layers connected to each other by oxalate units. While different guest molecules fill in their cavities of honeycomb-like layers. Study of ultrasonic treatment on 2 indicates the replacement of NH4+ by K+ on potassium ion exchange

  9. Search for a standard Higgs boson in the WH associated production channel with the final statistics of the Tevatron DO experiment

    International Nuclear Information System (INIS)

    Higgs mechanism, introduced in 1964, gives a satisfactory solution to a major problem of the standard model of elementary particles: the origin of the mass. It predicts the existence of the Higgs scalar boson, which mass is not defined by the theory and which has not been discovered experimentally yet (June 2012). The Tevatron, a hadron accelerator based at Fermi National Accelerator Laboratory near Chicago, took data with its two multi-purpose detectors CDF and DO since 1983 up to september 2011. Leaving about 10 fb-1 of statistics to analyze. Associated production of Higgs (H) and vector gauge boson (W) is the main search channel for a light standard Higgs boson. A light Higgs boson is expected to decay in a pair of beauty quarks. Using data collected by DO, we are looking for this production mode taking advantage of sophisticated techniques to improve the signal sensitivity like b-jet identification and multivariate discriminating factors. In the end, a statistical approach allows us to set an upper limit on the ratio between the observed (resp. expected) Higgs production and its theoretical cross section. The results obtained in the WH channel using 9.7 fb-1 at DO is 3.15 (resp. 3.96) for a 115 GeV/c2 Higgs boson. (author)

  10. Information transfer through quantum channels

    International Nuclear Information System (INIS)

    This PhD thesis represents work done between Aug. 2003 and Dec. 2006 in Reinhard F. Werner's quantum information theory group at Technische Universitaet Braunschweig, and Artur Ekert's Centre for Quantum Computation at the University of Cambridge. My thesis falls into the field of abstract quantum information theory. This work investigates both fundamental properties of quantum channels and their asymptotic capacities for classical as well as quantum information transfer. Stinespring's theorem is the basic structure theorem for quantum channels. It implies that every quantum channel can be represented as a unitary evolution on an enlarged system. In Ch. 3 we present a continuity theorem for Stinespring's representation: two quantum channels are similar if and only if it is possible to find unitary implementations that are likewise similar, with dimension-independent norm bounds. The continuity theorem allows to derive a formulation of the information-disturbance tradeoff in terms of quantum channels, and a continuity estimate for the no-broadcasting principle. In Ch. 4 we then apply the continuity theorem to give a strengthened no-go proof for quantum bit commitment, an important cryptographic primitive. This result also provides a natural characterization of those protocols that fall outside the standard setting of unconditional security, and thus may allow secure bit commitment. We present a new such protocol whose security relies on decoherence in the receiver's lab. Ch. 5 reviews the capacities of quantum channels for the transfer of both classical and quantum information, and investigates several variations in the notion of channel capacity. Memory effects are then investigated in detail in Ch. 6. We advertise a model which is sufficiently general to encompass all causal automata: every quantum process in which the outputs up to any given time t do not depend on the inputs at times t'>t can be represented as a concatenated memory channel. We then explain how

  11. Information transfer through quantum channels

    Energy Technology Data Exchange (ETDEWEB)

    Kretschmann, D.

    2007-03-12

    This PhD thesis represents work done between Aug. 2003 and Dec. 2006 in Reinhard F. Werner's quantum information theory group at Technische Universitaet Braunschweig, and Artur Ekert's Centre for Quantum Computation at the University of Cambridge. My thesis falls into the field of abstract quantum information theory. This work investigates both fundamental properties of quantum channels and their asymptotic capacities for classical as well as quantum information transfer. Stinespring's theorem is the basic structure theorem for quantum channels. It implies that every quantum channel can be represented as a unitary evolution on an enlarged system. In Ch. 3 we present a continuity theorem for Stinespring's representation: two quantum channels are similar if and only if it is possible to find unitary implementations that are likewise similar, with dimension-independent norm bounds. The continuity theorem allows to derive a formulation of the information-disturbance tradeoff in terms of quantum channels, and a continuity estimate for the no-broadcasting principle. In Ch. 4 we then apply the continuity theorem to give a strengthened no-go proof for quantum bit commitment, an important cryptographic primitive. This result also provides a natural characterization of those protocols that fall outside the standard setting of unconditional security, and thus may allow secure bit commitment. We present a new such protocol whose security relies on decoherence in the receiver's lab. Ch. 5 reviews the capacities of quantum channels for the transfer of both classical and quantum information, and investigates several variations in the notion of channel capacity. Memory effects are then investigated in detail in Ch. 6. We advertise a model which is sufficiently general to encompass all causal automata: every quantum process in which the outputs up to any given time t do not depend on the inputs at times t'>t can be represented as a concatenated memory

  12. Channelling versus inversion

    DEFF Research Database (Denmark)

    Gale, A.S.; Surlyk, Finn; Anderskouv, Kresten

    2013-01-01

    . Within this channel were smaller erosional structures (<10 m deep) that truncate originally horizontal bedding, are floored by hardgrounds, and locally have a basal fill of granular phosphorite. The entire channel system was progressively infilled by chalk, as demonstrated by the expanded succession of...... the lower Campanian Culver Chalk Formation. The beds of the channel fill are cut by small step faults, resulting from gravitational collapse. Complete burial had taken place by the base of the upper Campanian Portsdown Chalk Formation, which is of even thickness across the region. The structures are......Evidence from regional stratigraphical patterns in Santonian−Campanian chalk is used to infer the presence of a very broad channel system (5 km across) with a depth of at least 50 m, running NNW−SSE across the eastern Isle of Wight; only the western part of the channel wall and fill is exposed...

  13. Effects of Small Molecule Calcium-Activated Chloride Channel Inhibitors on Structure and Function of Accessory Cholera Enterotoxin (Ace of Vibrio cholerae.

    Directory of Open Access Journals (Sweden)

    Tanaya Chatterjee

    Full Text Available Cholera pathogenesis occurs due to synergistic pro-secretory effects of several toxins, such as cholera toxin (CTX and Accessory cholera enterotoxin (Ace secreted by Vibrio cholerae strains. Ace activates chloride channels stimulating chloride/bicarbonate transport that augments fluid secretion resulting in diarrhea. These channels have been targeted for drug development. However, lesser attention has been paid to the interaction of chloride channel modulators with bacterial toxins. Here we report the modulation of the structure/function of recombinant Ace by small molecule calcium-activated chloride channel (CaCC inhibitors, namely CaCCinh-A01, digallic acid (DGA and tannic acid. Biophysical studies indicate that the unfolding (induced by urea free energy increases upon binding CaCCinh-A01 and DGA, compared to native Ace, whereas binding of tannic acid destabilizes the protein. Far-UV CD experiments revealed that the α-helical content of Ace-CaCCinh-A01 and Ace-DGA complexes increased relative to Ace. In contrast, binding to tannic acid had the opposite effect, indicating the loss of protein secondary structure. The modulation of Ace structure induced by CaCC inhibitors was also analyzed using docking and molecular dynamics (MD simulation. Functional studies, performed using mouse ileal loops and Ussing chamber experiments, corroborate biophysical data, all pointing to the fact that tannic acid destabilizes Ace, inhibiting its function, whereas DGA stabilizes the toxin with enhanced fluid accumulation in mouse ileal loop. The efficacy of tannic acid in mouse model suggests that the targeted modulation of Ace structure may be of therapeutic benefit for gastrointestinal disorders.

  14. Effects of Small Molecule Calcium-Activated Chloride Channel Inhibitors on Structure and Function of Accessory Cholera Enterotoxin (Ace) of Vibrio cholerae

    Science.gov (United States)

    Chatterjee, Tanaya; Sheikh, Irshad Ali; Chakravarty, Devlina; Chakrabarti, Pinak; Sarkar, Paramita; Saha, Tultul; Chakrabarti, Manoj K.; Hoque, Kazi Mirajul

    2015-01-01

    Cholera pathogenesis occurs due to synergistic pro-secretory effects of several toxins, such as cholera toxin (CTX) and Accessory cholera enterotoxin (Ace) secreted by Vibrio cholerae strains. Ace activates chloride channels stimulating chloride/bicarbonate transport that augments fluid secretion resulting in diarrhea. These channels have been targeted for drug development. However, lesser attention has been paid to the interaction of chloride channel modulators with bacterial toxins. Here we report the modulation of the structure/function of recombinant Ace by small molecule calcium-activated chloride channel (CaCC) inhibitors, namely CaCCinh-A01, digallic acid (DGA) and tannic acid. Biophysical studies indicate that the unfolding (induced by urea) free energy increases upon binding CaCCinh-A01 and DGA, compared to native Ace, whereas binding of tannic acid destabilizes the protein. Far-UV CD experiments revealed that the α-helical content of Ace-CaCCinh-A01 and Ace-DGA complexes increased relative to Ace. In contrast, binding to tannic acid had the opposite effect, indicating the loss of protein secondary structure. The modulation of Ace structure induced by CaCC inhibitors was also analyzed using docking and molecular dynamics (MD) simulation. Functional studies, performed using mouse ileal loops and Ussing chamber experiments, corroborate biophysical data, all pointing to the fact that tannic acid destabilizes Ace, inhibiting its function, whereas DGA stabilizes the toxin with enhanced fluid accumulation in mouse ileal loop. The efficacy of tannic acid in mouse model suggests that the targeted modulation of Ace structure may be of therapeutic benefit for gastrointestinal disorders. PMID:26540279

  15. Studies upon the structure and dynamics of the benthic macroinvertebrate communities from two habitats of The Ier River’s Channel (Bihor county, Romania)

    OpenAIRE

    iana CUPŞA; Magdolna BIRKAS; Ilie TELCEAN

    2009-01-01

    The aim of the present study was to describe the structure and dynamics of the macrozoobenthic communities on a sandy and muddy substrate from Ier Channel, in order to show the importance of the composition of the substratum in the macrozoobenthic community settlement. During the study period (May-October 2006) we identified 43 species and 884 individuals of benthic organisms, especially Gastropoda and insect larvae. The number of species and individuals exhibited high variability on the sand...

  16. Physics and numerical methods of OPTMAN. A coupled-channels method based on soft-rotator model for a description of collective nuclear structure and excitations

    International Nuclear Information System (INIS)

    This report gives a detailed description of the theory and computational algorithms of modernized coupled-channels optical model code OPTMAN based on the soft-rotator model for the collective nuclear structure and excitations. This work was performed under the Project Agreement B-521 with the International Science and Technology Center (Moscow), financing party of which is Japan. As a result of this work, the computational method of OPTMAN was totally updated, and an user-friendly interface was attached. (author)

  17. Final Progress Report: FRACTURE AND SUBCRITICAL DEBONDING IN THIN LAYERED STRUCTURES: EXPERIMENTS AND MULTI-SCALE MODELING

    Energy Technology Data Exchange (ETDEWEB)

    Reinhold H. Dauskardt

    2005-08-30

    Final technical report detailing unique experimental and multi-scale computational modeling capabilities developed to study fracture and subcritical cracking in thin-film structures. Our program to date at Stanford has studied the mechanisms of fracture and fatigue crack-growth in structural ceramics at high temperature, bulk and thin-film glasses in selected moist environments where we demonstrated the presence of a true mechanical fatigue effect in some glass compositions. We also reported on the effects of complex environments and fatigue loading on subcritical cracking that effects the reliability of MEMS and other micro-devices using novel micro-machined silicon specimens and nanomaterial layers.

  18. Jet energy calibration and a search for supersymmetry with vector boson fusion channel like sign di-τh final states

    International Nuclear Information System (INIS)

    At the LHC, the production of jets has the highest cross section out of all processes. Therefore, jets are important objects for calibration, reconstruction and identification at the CMS experiment. In this thesis, the calibration of the jet energy scale with respect to residual differences between data and simulation after simulation-based precalibrations is shown. A correction for the √(s)=8 TeV run of 2012 depending on jet transverse momentum and pseudorapidity is derived using di-jet final states. Furthermore, the capacity of jets to be misidentified as hadronically decaying τ leptons is demonstrated. A method for an approximate simulation based description of this property is shown in the context of a search for supersymmetry in vector boson fusion final states.

  19. Computational simulation of composite structures with and without damage. M.S. Thesis Final Report

    Science.gov (United States)

    Wilt, Thomas F.

    1994-01-01

    A methodology is described which uses finite element analysis of various laminates to computationally simulate the effects of delamination damage initiation and growth on the structural behavior of laminated composite structures. The delamination area is expanded according to a set pattern. As the delamination area increases, how the structural response of the laminate changes with respect to buckling and strain energy release rate are investigated. Rules are presented for laminates of different configurations, materials and thickness. These results demonstrate that computational simulation methods can provide alternate methods to investigate the complex delamination damage mechanisms found in composite structures.

  20. Near free-surface turbulent structures in a high-froude number turbulent open-channel flow

    International Nuclear Information System (INIS)

    In this study, Direct Numerical Simulation (DNS) of an air-liquid counter current flow induced by a high-speed liquid film at Froude number of 1.8 based on the bulk water mean-velocity and wave velocity of long wave, was conducted. As the results, Air-liquid interaction effects on the water phase were very weak, and present flow field formed so-called ''Super-critical turbulent open-channel flow''. In the supercritical open-channel flow, vertical turbulent confinement effect cannot be observed and vertical turbulent intensity was increased near free-surface caused from surface deformation effects. (author)

  1. Structural analysis of an epitaxial layer of CdTe on GaAs by the multidirectional channeling technique

    Energy Technology Data Exchange (ETDEWEB)

    Wielunski, L.S. (CSIRO Div. of Applied Physics, Lucas Heights Research Labs., Menai, NSW (Australia)); Kwietniak, M.S.; Pain, G.N. (Telecom Australia Research Labs., Clayton, Victoria (Australia)); Rossouw, C.J. (CSIRO Div. of Materials Science and Tech., Clayton, Victoria (Australia))

    1990-01-01

    Multidirectional RBS channeling analysis is used to identify the crystal orientation of a MOCVD-grown CdTe layer on a (100) GaAs substrate. Results show that the CdTe has a (111) orientation. However, from channeling in different axial directions and a rotational angular scan around the <111> axis, it is deduced that the CdTe layer is multiply twinned about this axis. Cross-sectional electron microscopy has revealed the twins to be 180deg rotational twins. (orig.).

  2. The lecomte-ueda transformation and resonance structure in the multichannel quantum defect theory for the two open and one closed channel system

    International Nuclear Information System (INIS)

    The transformation devised by Lecomte and Ueda for the study of resonance structures in the multichannel quantum defect theory (MQDT) is used to analyze partial photofragmentation cross section formulas in MQDT analogous to Fano's resonance formula obtained in the previous work for the system involving two open and one closed channels. Detailed comparison of the MQDT results with the configuration mixing (CM) ones is made. Resonance structures and their geometrical relations in the MQDT formulation are revealed and classified by combining Lecomte and Ueda's theory with the geometrical method devised to study the coupling between background and resonance scatterings

  3. The lecomte-ueda transformation and resonance structure in the multichannel quantum defect theory for the two open and one closed channel system

    CERN Document Server

    Lee, C W

    2002-01-01

    The transformation devised by Lecomte and Ueda for the study of resonance structures in the multichannel quantum defect theory (MQDT) is used to analyze partial photofragmentation cross section formulas in MQDT analogous to Fano's resonance formula obtained in the previous work for the system involving two open and one closed channels. Detailed comparison of the MQDT results with the configuration mixing (CM) ones is made. Resonance structures and their geometrical relations in the MQDT formulation are revealed and classified by combining Lecomte and Ueda's theory with the geometrical method devised to study the coupling between background and resonance scatterings.

  4. Final storage of radioactive waste in Germany. Are administrative structures in need of modification?

    International Nuclear Information System (INIS)

    Delays in commissioning the Konrad Mine as a repository for radioactive waste not generating heat, and in exploring the Gorleben salt dome for suitability as a repository for high-level waste generating heat, invite the question whether the legal regulations in place, especially administration and funding of the repository, are suitable for solving current problems or whether they are in need of improvement. The key principles of the back end of the nuclear fuel cycle, final storage included, were laid down as rules in 1976. Execution of the necessary waste management steps, from radioactive waste arisings to their final disposal, was split between private responsibilities and government competences. Final storage, to this day, has been of prime importance. Pursuant to the Atomic Energy Act, the federal government is required to set up facilities for final storage of radioactive waste. The waste management duties incumbent upon private parties, from radioactive waste arisings to delivery, are mainly subject to safety criteria under the Atomic Energy Act and the Radiation Protection Ordinance. As far as administration is concerned, the private parties are free in the way they comply with regulatory requirements. They are required to bear the cost in accordance with the polluter-pays-principle. In the light of the sluggish execution of government tasks from 1976 to this day, the question of improvements has become more acute than ever. This is where assignment offers an approach towards better administration which can be taken at short notice, as assignment implies a reduction in the number of interfaces and clearer responsibilities. However, even the best administration is unable to lead to the repositories required by law if those responsible in government fail to act in accordance with the spirit and letter of the law. (orig.)

  5. Simquake 3: Seismic interactions between building structures and rock-socketed foundations: Final report

    International Nuclear Information System (INIS)

    It has long been recognized that soil-structure interaction can significantly influence the earthquake response of massive structures such as nuclear power plant reactor buildings. The linear analysis methods that are widely used to model interaction phenomena can result in often unrecognized safety margins in design for earthquake excitation. Use of improved interaction models which capture nonlinear characteristics of interaction---such as energy dissipation and significant changes in stiffness---can provide realistic predictions of the earthquake loads imposed on nuclear power plant structures and equipment, supplying an improved basis for seismic design review. This report documents the results of a research effort investigating the soil-structure (or structure-media) interaction of reinforced concrete structures founded in backfilled rock sockets. The objectives of the research, which included field testing with semi-scale structural models, were: to examine the influence of the backfilled socket on structural dynamic response; and to develop an experimental data base for the benchmarking of computer simulation procedures

  6. An in-depth analysis of the biological functional studies based on the NMR M2 channel structure of influenza A virus

    International Nuclear Information System (INIS)

    The long-sought three-dimensional structure of the M2 proton channel of influenza A virus was successfully determined recently by the high-resolution NMR [J.R. Schnell, J.J. Chou, Structure and mechanism of the M2 proton channel of influenza A virus, Nature 451 (2008) 591-595]. Such a milestone work has provided a solid structural basis for studying drug-resistance problems. However, the action mechanism revealed from the NMR structure is completely different from the traditional view and hence prone to be misinterpreted as 'conflicting' with some previous biological functional studies. To clarify this kind of confusion, an in-depth analysis was performed for these functional studies, particularly for the mutations D44N, D44A and N44D on position 44, and the mutations on positions 27-38. The analyzed results have provided not only compelling evidences to further validate the NMR structure but also very useful clues for dealing with the drug-resistance problems and developing new effective drugs against H5N1 avian influenza virus, an impending threat to human beings.

  7. Some peculiarities of liver and testis chromatin structure of channel fish (Ictalurus Punctatus) from ChNPP cooling reservoir

    International Nuclear Information System (INIS)

    Electrophoretic spectra of nuclear proteins, as well as of DNA fragments, forming as a result of activation of liver/testis cell nuclear nucleases of channel fishes from ChNPP cooling reservoir, have been investigated. Differences were found between histone H1 and nonhistone fractions of liver/testis chromatin protein tissues. Nuclear nucleases are also tissue-specific and have different activity

  8. Students' Understanding of External Representations of the Potassium Ion Channel Protein Part II: Structure-Function Relationships and Fragmented Knowledge

    Science.gov (United States)

    Harle, Marissa; Towns, Marcy H.

    2012-01-01

    Research that has focused on external representations in biochemistry has uncovered student difficulties in comprehending and interpreting external representations. This study focuses on students' understanding of three external representations (ribbon diagram, wireframe, and hydrophobic/hydrophilic) of the potassium ion channel protein. Analysis…

  9. Structural Studies of Bacterial Enzymes and their Relation to Antibiotic Resistance Mechanisms - Final Paper

    Energy Technology Data Exchange (ETDEWEB)

    Maltz, Lauren [SLAC National Accelerator Lab., Menlo Park, CA (United States)

    2015-08-27

    By using protein crystallography and X-ray diffraction, structures of bacterial enzymes were solved to gain a better understanding of how enzymatic modification acts as an antibacterial resistance mechanism. Aminoglycoside phosphotransferases (APHs) are one of three aminoglycoside modifying enzymes that confer resistance to the aminoglycoside antibiotics via enzymatic modification, rendering many drugs obsolete. Specifically, the APH(2”) family vary in their substrate specificities and also in their preference for the phosphate donor (ADP versus GDP). By solving the structures of members of the APH(2”) family of enzymes, we can see how domain movements are important to their substrate specificity. Our structure of the ternary complex of APH(2”)-IIIa with GDP and kanamycin, when compared to the known structures of APH(2”)-IVa, reveals that there are real physical differences between these two enzymes, a structural finding that explains why the two enzymes differ in their preferences for certain aminoglycosides. Another important group of bacterial resistance enzymes are the Class D β- lactamases. Oxacillinase carbapenemases (OXAs) are part of this enzyme class and have begun to confer resistance to ‘last resort’ drugs, most notably carbapenems. Our structure of OXA-143 shows that the conformational flexibility of a conserved hydrophobic residue in the active site (Val130) serves to control the entry of a transient water molecule responsible for a key step in the enzyme’s mechanism. Our results provide insight into the structural mechanisms of these two different enzymes

  10. Structural characterization of an enantiopure hydroxo-bridged binuclear iron(III) complex with empty one-dimensional helical channels.

    Science.gov (United States)

    Alam, Md Akhtarul; Nethaji, Munirathinum; Ray, Manabendra

    2005-03-01

    A H-bond capable chiral tetradentate ligand, Fe3+, and acetate ion assembles into a hydroxo-bridged binuclear complex with the formula [FeIII2(mu-OH)(mu-OAc)(S-L)2] x 4H2O (1) where H2S-L = S-2-(2-hydroxy-benzylamino)-3-(1H-imidazol-4-yl)-propionic acid. The crystal of 1 contains right-handed one-dimensional (1D) helical channels with 7.3-9.8 A diameter. A similar reaction with a ligand having opposite chirality forms the complex with left-handed helical channels (1a). Heating the crystals of 1 at 95 degrees C under reduced pressure selectively removes three waters from the channel forming an enantiopure porous crystal with empty channels (solvent accessible voids 18% v/v). Intermolecular hydrogen bonding between the imidazole N-H and phenolate oxygen in 1-2 forms a C6 symmetric helix with bridging hydroxo groups pointing inside the channels. All the H-bond capable atoms in the ligand along with one water molecule form an extended H-bonded network throughout the crystal. Exposing the empty channels of 2 to iodine vapor indicates partial filling of the channels with iodine. Crystal data for 1 x 4H2O include the following: hexagonal, P61, a = b = 13.164(3) A, c = 36.305 (11) A, alpha = beta = 90 degrees , gamma = 120 degrees , Z = 6, R1 = 0.0387, wR2 = 0.0842. Crystal data for 1a x 2H2O include the following: hexagonal, P6(5), a = b = 13.151(4) A, c = 36.558(2) A, alpha = beta = 90 degrees , gamma = 120 degrees , Z = 6, R1 = 0.0416, wR2 = 0.1190. Crystal data for 2 x H2O include the following: hexagonal, P61, a = b = 13.160(7) A, c = 36.559 (4) A, alpha = beta = 90 degrees , gamma = 120 degrees , Z = 6, R1 = 0.0574, wR2 = 0.1423. PMID:15732970

  11. NIR luminescent Er3+/Yb3+ co-doped SiO2–ZrO2 nanostructured planar and channel waveguides: Optical and structural properties

    International Nuclear Information System (INIS)

    Optical and structural properties of planar and channel waveguides based on sol–gel Er3+ and Yb3+ co-doped SiO2–ZrO2 are reported. Microstructured channels with high homogeneous surface profile were written onto the surface of multilayered densified films deposited on SiO2/Si substrates by a femtosecond laser etching technique. The densification of the planar waveguides was evaluated from changes in the refractive index and thickness, with full densification being achieved at 900 °C after annealing from 23 up to 500 min, depending on the ZrO2 content. Crystal nucleation and growth took place together with densification, thereby producing transparent glass ceramic planar waveguides containing rare earth-doped ZrO2 nanocrystals dispersed in a silica-based glassy host. Low roughness and crack-free surface as well as high confinement coefficient were achieved for all the compositions. Enhanced NIR luminescence of the Er3+ ions was observed for the Yb3+-codoped planar waveguides, denoting an efficient energy transfer from the Yb3+ to the Er3+ ion. Highlights: ► Sol–gel high NIR luminescent nanostructured planar and channel waveguides. ► Microstructured channels written by a femtosecond laser etching technique. ► Transparent glass ceramic with rare earth-doped ZrO2 nanocrystals in a silica host. ► Enhanced NIR luminescence, efficient energy transfer from the Yb3+ to the Er3+ ion. ► New planar channel waveguides to be applied as EDWA in the C telecommunication band.

  12. Structural Analysis and Deletion Mutagenesis Define Regions of QUIVER/SLEEPLESS that Are Responsible for Interactions with Shaker-Type Potassium Channels and Nicotinic Acetylcholine Receptors.

    Directory of Open Access Journals (Sweden)

    Meilin Wu

    Full Text Available Ly6 proteins are endogenous prototoxins found in most animals. They show striking structural and functional parallels to snake α-neurotoxins, including regulation of ion channels and cholinergic signaling. However, the structural contributions of Ly6 proteins to regulation of effector molecules is poorly understood. This question is particularly relevant to the Ly6 protein QUIVER/SLEEPLESS (QVR/SSS, which has previously been shown to suppress excitability and synaptic transmission by upregulating potassium (K channels and downregulating nicotinic acetylcholine receptors (nAChRs in wake-promoting neurons to facilitate sleep in Drosophila. Using deletion mutagenesis, co-immunoprecipitations, ion flux assays, surface labeling and confocal microscopy, we demonstrate that only loop 2 is required for many of the previously described properties of SSS in transfected cells, including interactions with K channels and nAChRs. Collectively our data suggest that QVR/SSS, and by extension perhaps other Ly6 proteins, target effector molecules using limited protein motifs. Mapping these motifs may be useful in rational design of drugs that mimic or suppress Ly6-effector interactions to modulate nervous system function.

  13. Effects of Active Subsidence Vs. Existing Basin Geometry on Fluviodeltaic Channels and Stratal Architecture

    Science.gov (United States)

    Liang, M.; Kim, W.; Passalacqua, P.

    2015-12-01

    Tectonic subsidence and basin topography, both determining the accommodation, are fundamental controls on the basin filling processes. Their effects on the fluvial organization and the resultant subsurface patterns remain difficult to predict due to the lack of understanding about interaction between internal dynamics and external controls. Despite the intensive studies on tectonic steering effects on alluvial architecture, how the self-organization of deltaic channels, especially the distributary channel network, respond to tectonics and basin geometry is mostly unknown. Recently physical experiments and field studies have hinted dramatic differences in fluviodeltaic evolution between ones associated with active differential subsidence and existing basin depth. In this work we designed a series of numerical experiments using a reduced-complexity channel-resolving model for delta formation, and tested over a range of localized subsidence rates and topographic depression in basin geometry. We also used a set of robust delta metrics to analyze: i) shoreline planform asymmetry, ii) channel and lobe geometry, iii) channel network pattern, iv) autogenic timescales, and v) subsurface structure. The modeling results show that given a similar final thickness, active subsidence enhances channel branching with smaller channel sand bodies that are both laterally and vertically connected, whereas existing topographic depression causes more large-scale channel avulsions with larger channel sand bodies. In general, both subsidence and existing basin geometry could steer channels and/or lock channels in place but develop distinct channel patterns and thus stratal architecture.

  14. A Micromechanical RF Channelizer

    Science.gov (United States)

    Akgul, Mehmet

    this work is quite enabling, since it provides a much less expensive method than microwave CVD based alternatives for depositing doped CVD diamond over large wafers (e.g., 8") for batch fabrication. The first three methods described so far focus on a single vibrating disk resonator and improve its electrical equivalent modeling, C x/Co, and Q. Once we craft the resonator that meets the challenging design requirements of RF channel-select filters, the last method presents a design hierarchy that achieves the desired filter response with a specific center frequency, bandwidth, and filter termination resistance. The design procedure culminates in specific values for all mechanical geometry variables necessary for the filter layout, such as disk radii, and beam widths; and process design variables such as resonator material thickness and capacitive actuation gap spacing. Finally, the experimental results introduce a 39nm-gap capacitive transducer, voltage-controlled frequency tuning, and a stress relieving coupled array design that enable a 0.09% bandwidth 223.4 MHz channel-select filter with only 2.7dB of in-band insertion loss and 50dB rejection of out-of-band interferers. This amount of rejection is more than 23dB better than previous capacitive-gap transduced filter designs that did not benefit from sub-50nm gaps. It also comes in tandem with a 20dB shape factor of 2.7 realized by a hierarchical mechanical circuit design utilizing 206 micromechanical circuit elements, all contained in an area footprint of only 600mumx420mum. The key to such low insertion loss for this tiny percent bandwidth is Q's>8,800 supplied by polysilicon disk resonators employing for the first time capacitive transducer gaps small enough to generate coupling strengths of C x/Co ˜0.1%, which is a 6.1x improvement over previous efforts. The filter structure utilizes electrical tuning to correct frequency mismatches due to process variations, where a dc tuning voltage of 12.1 V improves the filter

  15. USFWS/DU Floating Nest Structure Project Report: 1997 season and final summary

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This report presents four-year results from a waterfowl floating nest structure project in the Morris Wetland District, Minnesota. The study was conducted from 1994...

  16. Semiempirical Studies of Atomic Structure. Final Report for July 1, 2000 - June 30, 2003

    International Nuclear Information System (INIS)

    This project has developed a comprehensive and reliable base of accurate atomic structure data for complex many-electron systems. This has been achieved through the use of sensitive data-based parametric systematizations, precise experimental measurements, and supporting theoretical computations. The atomic properties studies involved primary data (wavelengths, frequency intervals, lifetimes, relative intensities, production rates, etc.) and derived structural parameters (energy levels, ionization potentials, line strengths, electric polarizabilities, branching fractions, excitation functions, etc)

  17. Semiempirical Studies of Atomic Structure. Final Report for July 1, 2000 - June 30, 2003

    Energy Technology Data Exchange (ETDEWEB)

    Curtis, L. J.

    2004-05-01

    This project has developed a comprehensive and reliable base of accurate atomic structure data for complex many-electron systems. This has been achieved through the use of sensitive data-based parametric systematizations, precise experimental measurements, and supporting theoretical computations. The atomic properties studies involved primary data (wavelengths, frequency intervals, lifetimes, relative intensities, production rates, etc.) and derived structural parameters (energy levels, ionization potentials, line strengths, electric polarizabilities, branching fractions, excitation functions, etc).

  18. Novel concepts in weld science: Role of gradients and composite structure. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Matlock, D.K.; Olson, D.L.

    1994-03-01

    The effects of compositional and microstructural gradients on weld metal and simulated weld metal properties were evaluated in this multi-part study. The results obtained on single phase solid solution systems were used as a basis for a fundamental study of the effects of compositional gradients on crack growth, both at low temperatures, in fatigue and at high temperatures during creep. Methods to physically simulate gradients in weld metals with roll bonded laminate composites were applied to analyses of ferrite-austenite and ferrite-sigma-austenite multiphase systems. Finally, results of the physical simulation analyses were utilized to predict the effects of weld process parameters on weld metal properties.

  19. Multi-jet structure of hadronic final states and trajectory slope

    International Nuclear Information System (INIS)

    On the basis of Veneziano's multi-jet view of hadronic final states, trajectory slopes of the pomeron and the baryonium family are calculated in the unit of the rho-trajectory slope. It is shown that an improved treatment of the multi-chain random walk problem in the impact parameter space leads to the result αsub(rho)' : αsub(p)' : αsub(M4J)' : αsub(M2J)' : αsub(M0J)' = 1 : 1/3 : 1 : 1/3 : 3/20, where M sub(2 n)sup( j) stands for N quark-N antiquark baryonium state. (author)

  20. Analytical drain current model for long-channel gate-all-around negative capacitance transistors with a metal-ferroelectric-insulator-semiconductor structure

    Science.gov (United States)

    Jiang, Chunsheng; Liang, Renrong; Wang, Jing; Xu, Jun

    2016-02-01

    A carrier-based analytical drain current model was proposed for long-channel gate-all-around negative capacitance transistors with a metal-ferroelectric-insulator-semiconductor structure, which was derived by solving Poisson’s equation and a one-dimensional Landau-Khalatnikov equation. The electrostatic potential, gain of surface potential, and drain current were examined extensively by changing different device parameters, including the ferroelectric film thickness, channel radius, insulator layer thickness, and permittivity of the insulator layer. The device design methodologies are discussed in detail in this paper. A nonhysteretic transfer characteristic with a steep subthreshold swing (optimizing the device parameters. The developed model is valid for all operation regions without any auxiliary variables or functions.

  1. Temperature effects on chemical structure and motion in coal. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Maciel, G.E.

    1996-09-30

    The objective of this project was to apply recently developed, state-of-the-art nuclear magnetic resonance (NMR) techniques to examine in situ changes in the chemical structure and molecular/macromolecular motion in coal as the temperature is increased above room temperature. Although alterations in the chemical structure of coal have been studied previously by {sup 13}C NMR, using quenched samples, the goal of this project was to examine these chemical structural changes, and changes in molecular/macromolecular mobility that may precede or accompany the chemical changes, at elevated temperatures, using modern {sup 13}C and {sup 1}H NMR techniques, especially {sup 1}H dipolar-dephasing techniques and related experiments pioneered in the laboratory for examining pyridine-saturated coals. This project consisted of the following four primary segments and related efforts on matters relevant to the first four tasks. (1) {sup 1}H NMR characterization of coal structure and mobility as a function of temperature variation over a temperature range (30--240 C) for which substantial chemical transformations were not anticipated. (2) {sup 1}H NMR characterization of coal structure, mobility and conversion as a function of temperature variation over a temperature range (240--500 C) for which chemical transformations of coal are known to occur. (3) {sup 13}C NMR investigation of coal structure/mobility as a function of temperature over a temperature range (30--240 C) for which substantial chemical transformations were not anticipated. (4) {sup 13}C NMR investigation of coal structure, dynamics and conversion as a function of temperature variation over a range (240--500 C) for which chemical transformations of coal are known to occur. (5) Related matters relevant to the first four tasks: (a) {sup 1}H CRAMPS NMR characterization of oil shales and their kerogen concentrates; and (b) improved quantitation in {sup 13}C MAS characterization of coals.

  2. Advancement and testing of analysis techniques for the determination of the structural dynamic behavior of containment structures. Final report

    International Nuclear Information System (INIS)

    Within the framework of project RS1197, analysis methods have been further developed and tested for the determination of the structural dynamic loading and the maximum load-bearing capacity of containment structures with a focus on the quantification of safety margins against failures due to loads resulting from selected internal and external hazards. The analyses comprised a model containment structure of prestressed reinforced concrete under internal pressure loading until reaching failure pressure, an outer containment structure made of reinforced concrete under local impact loads that may occur during a targeted aircraft crash, and a steel containment under local peak loads from internal pressure and temperature loads due to core melt scenarios with a local hydrogen combustion. GRS participated in the international ''Standard Problem Exercise 3'' on the issue ''Performance of Containment Vessel under Severe Accident Conditions''. Together with the cooperation partners, aspects of the global containment behaviour were considered based on the example of the Sandia 1:4 model containment of prestressed concrete, which was loaded by rising internal pressure until failure. Complex analysis models were developed, calculating the behaviour of the prestressing tendons under consideration of the frictional contact with the cladding tubes. Compared with corresponding measurement values, the analysis results show that the stresses near the tensioning device and the deformation of the inner surface can be realistically modelled as a function of the internal pressure. In the experiment, global structural failure of the containment model was caused by tendon rupture at about 3.64 times the design pressure. With the developed analysis models of a generic structure of an outer reinforced concrete containment, simulations were carried out for various aircraft crash scenarios as contact problems with explicit impactor simulation. For this

  3. Seismic safety margins research program. Phase I final report - Major structure response (Project IV)

    International Nuclear Information System (INIS)

    The primary task of the Major Structure Response Project within the Seismic Safety Margins Research Program (SSMRP) was to develop detailed finite element models of the Zion Nuclear Power Plant's containment building and auxiliary-fuel-turbine (AFT) complex. The resulting models served as input to the seismic methodology analysis chain. The containment shell was modeled as a series of beam elements with the shear and bending characteristics of a circular cylindrical shell. Masses and rotary inertias were lumped at nodal points; thirteen modes were included in the analysis. The internal structure was modeled with three-dimensional finite elements, with masses again lumped at selected nodes; sixty modes were included in the analysis. The model of the AFT complex employed thin plate and shell elements to represent the concrete shear walls and floor diaphragms, and beam and truss elements to model the braced frames. Because of the size and complexity of the model, and the potentially large number of degrees of freedom, masses were lumped at a limited number of node points. These points were selected so as to minimize the effect of the discrete mass distribution on structural response. One hundred and thirteen modes were extracted. A second objective of Project IV was to investigate the effects of uncertainty and variability on structural response. To this end, four side studies were conducted. Three of them, briefly summarized in this volume, addressed themselves respectively to an investigation of sources of random variability in the dynamic response of nuclear power plant structures; formulation of a methodology for modeling and evaluating the effects of structural uncertainty on predicted modal characteristics of major nuclear power plant structures and substructures; and a preliminary evaluation of nonlinear responses in shear-wall structures. A fourth side study, reported in detail in this volume, quantified variations in dynamic characteristics and seismic

  4. Study of ZZ diboson final states in the leptons-neutrinos decay channel with the CMS experiment at the LHC at CERN

    International Nuclear Information System (INIS)

    This thesis presents a study of ZZ final states performed with data recorded with the CMS detector at LHC. This study exploits the first data delivered by the LHC and recorded by CMS in 2010 and 2011. The ZZ production cross section is measured and limits are set on neutral electroweak triple gauge couplings. The measurement of the production cross-section of ZZ has given: σ(pp → ZZ) equals (11.24 ± 3.18 (stat) ± 1.98 (syst) ± 0.67 (lumi)) pb for an energy of 7 TeV (in the center of mass frame). This value is consistent with Standard Model's theoretical predictions. Limiting values for the anomalous coupling constants f4Z and f5Z have been deduced for a confidence ratio of 95%: -0.080 4Z 5Z < 0.077. The existence of such couplings would be an indication of new physics beyond the Standard Model. Moreover, the ZZ process in the Standard Model is a background for Higgs searches and have to be well known. Some preliminary studies are performed on the CMS electromagnetic calorimeter. These studies are related to the selective readout system and to the laser monitoring system of the electromagnetic calorimeter. The measurement and the behaviour of the transverse missing energy are also studied in events containing one electroweak boson decaying into electron(s). This study shows that pileup has an important effect on missing transverse energy measurements. Some corrections have to be taken into account to deal with these effects. Conclusions from these analyses contribute to the good understanding of results obtained in the ZZ final states study

  5. Seismic Category I Structures Program: Final report, FY 1983-84

    International Nuclear Information System (INIS)

    This report summarizes the results obtained from a series of simulated seismic tests on scale models of a prototypical Category I nuclear power plant auxiliary building, representing a reinforced concrete, diesel generator building. Two sizes of model structures were used: 1/10 scale and 1/30 scale. Model construction, test methods, instrumentation, data reduction techniques, experimental results, comparison of experimental and computed results, and conclusions are presented in this report. Values of structural stiffness obtained from both static and dynamic tests are found to be significantly lower than values of stiffness computed using the usual design methods. Values of modal frequency obtained from dynamic tests are compared to computed values. Decreasing modal frequencies with increasing seismic input are reported. The effective damping of these test structures is determined from the test results. The results obtained from the two different size (1/10- and 1/30-scale) models are compared. 10 refs., 31 figs., 8 tabs

  6. Seismic Category I Structures Program: Final report, FY 1983-84

    Energy Technology Data Exchange (ETDEWEB)

    Dove, R.C.; Bennett, J.G.; Farrar, C.; Anderson, C.A.

    1987-09-01

    This report summarizes the results obtained from a series of simulated seismic tests on scale models of a prototypical Category I nuclear power plant auxiliary building, representing a reinforced concrete, diesel generator building. Two sizes of model structures were used: 1/10 scale and 1/30 scale. Model construction, test methods, instrumentation, data reduction techniques, experimental results, comparison of experimental and computed results, and conclusions are presented in this report. Values of structural stiffness obtained from both static and dynamic tests are found to be significantly lower than values of stiffness computed using the usual design methods. Values of modal frequency obtained from dynamic tests are compared to computed values. Decreasing modal frequencies with increasing seismic input are reported. The effective damping of these test structures is determined from the test results. The results obtained from the two different size (1/10- and 1/30-scale) models are compared. 10 refs., 31 figs., 8 tabs.

  7. RATU Nuclear power plant structural safety research programme 1990-1994. Final report

    International Nuclear Information System (INIS)

    The major part of nuclear energy research in Finland has been organized as five-year nationally coordinated research programmes. The research programme on the Nuclear Power Plant Structural Safety was carried out during the period from 1990 to 1994. The total volume was about 76 person-years and the expenditure about 49 million FIM. Studies on the structural materials in nuclear power plants created the experimental data and background information necessary for the structural integrity assessments of mechanical components. The research was carried out by developing experimental fracture mechanics methods including statistical analysis methods of material property data, and by studying material ageing and, in particular, mechanisms of material deterioration due to neutron irradiation, corrosion and water chemistry. Besides material studies, new testing methods and sensors for the measurement of loading and water chemistry parameters have been developed

  8. Monetary policy, risk-taking channel and income structure: an empirical assessment of the French banking system

    OpenAIRE

    Samer Eid

    2011-01-01

    According to some recent empirical papers, periods of low interest rates would favor a risk-taking channel of monetary policy whereby bank risk-appetite and risk-taking behavior would be stronger after. Several theoretical explanations exist to this phenomenon, such as the managerial compensation schemes linked to fixed objectives, the procyclical valuation methods of assets, income and cash flows, or the abundant liquidity at a low cost. This paper studies the risk behavior of the main Frenc...

  9. Final Report---Next-Generation Solvers for Mixed-Integer Nonlinear Programs: Structure, Search, and Implementation

    Energy Technology Data Exchange (ETDEWEB)

    Linderoth, Jeff T. [University of Wisconsin-Madison; Luedtke, James R. [University of Wisconsin-Madison

    2013-05-30

    The mathematical modeling of systems often requires the use of both nonlinear and discrete components. Problems involving both discrete and nonlinear components are known as mixed-integer nonlinear programs (MINLPs) and are among the most challenging computational optimization problems. This research project added to the understanding of this area by making a number of fundamental advances. First, the work demonstrated many novel, strong, tractable relaxations designed to deal with non-convexities arising in mathematical formulation. Second, the research implemented the ideas in software that is available to the public. Finally, the work demonstrated the importance of these ideas on practical applications and disseminated the work through scholarly journals, survey publications, and conference presentations.

  10. Competing degrees of freedom in nuclear structure theory. Final Report for 1999-2002

    International Nuclear Information System (INIS)

    The central focus of this research was the interplay between three generic classes of degrees of freedom relevant to nuclear structure theory: single-particle degrees of freedom, collective degrees of freedom, and statistical degrees of freedom, which can be thought of as an incoherent mean field or a thermal bath

  11. Physics of Ion Channels

    OpenAIRE

    Kuyucak, Serdar; Bastug, Turgut

    2003-01-01

    We review the basic physics involved in transport of ions across membrane channels in cells. Electrochemical forces that control the diffusion of ions are discussed both from microscopic and macroscopic perspectives. A case is made for use of Brownian dynamics as the minimal phenomenological model that provides a bridge between experiments and more fundamental theoretical approaches. Application of Brownian and molecular dynamics methods to channels with known molecular structures is discussed.

  12. Covert Flow Graph Approach to Identifying Covert Channels

    Directory of Open Access Journals (Sweden)

    XiangMei Song

    2011-12-01

    Full Text Available In this paper, the approach for identifying covert channels using a graph structure called Covert Flow Graph is introduced. Firstly, the construction of Covert Flow Graph which can offer information flows of the system for covert channel detection is proposed, and the search and judge algorithm used to identify covert channels in Covert Flow Graph is given. Secondly, an example file system analysis using Covert Flow Graph approach is provided, and the analysis result is compared with that of Shared Resource Matrix and Covert Flow Tree method. Finally, the comparison between Covert Flow Graph approach and other two methods is discussed. Different from previous methods, Covert Flow Graph approach provides a deep insight for system’s information flows, and gives an effective algorithm for covert channel identification.

  13. ICFD modeling of final settlers - developing consistent and effective simulation model structures

    DEFF Research Database (Denmark)

    Plósz, Benedek G.; Guyonvarch, Estelle; Ramin, Elham;

    the SST through the proposed methodology is able to predict solid distribution with high accuracy -- taking a reasonable computational effort -- when compared to multi-dimensional numerical experiments, under a wide range of flow and design conditions. The iCFD models developed are intended to comply...... effluent quality albeit at a lower order of magnitude not visible in our results. LHS. Based on the screening study, the five significant factors used in the subsequent LHS are Xin, Qov, R, SWD and Hin. The LHS yielded 50 CFD simulations, and the outputs, in terms of SBH, XRAS, Xeff, total amount of solids...... outputs from LHS, we assessed nine different model structures based on literature (1; 3; 2; 10; 9) and on more recent considerations (Fig. 2a). Validation tests were done using the CFD outputs from extreme scenarios. The most effective model structure (relatively low the sum of square of relative errors...

  14. Structural domains in NADPH: Protochlorophyllide oxidoreductases involved in catalysis and substrate binding. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Timko, Michael P.

    1999-09-24

    Until recently little direct information was available about specific structural determinants within the light-dependent NADPH: protochlorophyllide oxidoreductases (PORs) required for substrate and cofactor binding, catalytic activity, and thylakoid membrane localization. Based on our previous DOE-funded studies, during the past year we brought to fruition a number of ongoing experiments, initiated several new avenues of investigations, and overall have made considerable progress towards establishing the basic structural parameters governing POR function. Our studies to date have defined residues and domains involved in substrate and cofactor binding and catalysis, and elaborated on the mechanism for membrane localization of POR in developing plastids. Our results and their significance, as well as our work in progress, are detailed.

  15. Powder-based synthesis of nanocrystalline material components for structural application. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Ilyuschenko, A.F.; Ivashko, V.S.; Okovity, V.A. [Powder Metallurgy Research Inst., Minsk (Belarus)] [and others

    1998-12-01

    Hydroxiapate spray coatings and substrates for implant production as well as multilayered metal ceramic coatings from nanocrystalline materials are a subject of the investigation. The work aims at the improvement of quality of said objects. This study has investigated the processes of hydroxiapatite powder production. Sizes, shapes and relief of initial HA powder surface are analyzed using SEM and TEM. Modes of HA plasma spraying on a substrate from titanium and associated compositions of traditional and nanocrystalline structure are optimized. The quality of the sprayed samples are studied using X-ray phase analysis and metallographic analysis. The results of investigations of bioceramic coating spraying on titanium are theoretically generalized, taking into account obtained experimental data. The results of investigations of ion-beam technology are presented for spraying multilayered coatings consisting of alternating metal-ceramic layers of nanocrystalline structure.

  16. Structure, Function, and Regulation of Antenna Complexes of Green Photosynthetic Bacteria; FINAL

    International Nuclear Information System (INIS)

    This project is concerned with the structure and function of the chlorosome antennas found in green photosynthetic bacteria. Chlorosomes are ellipsoidal structures attached to the cytoplasmic side of the inner cell membrane. These antenna complexes provide a very large absorption cross section for light capture. Evidence is overwhelming that the chlorosome represents a very different type of antenna from that found in any other photosynthetic system yet studied. It is now clear that chlorosomes do not contain traditional pigment-proteins, in which the pigments bind to specific sites on proteins. Instead, the chlorosome pigments are organized in vivo into pigment oligomers in which direct pigment-pigment interactions are of dominant importance. Our group has used a multidisciplinary approach to investigate this unique system, including model systems, ultrafast spectroscopy, molecular biology, protein chemistry and X-ray crystallography

  17. Design, Synthesis and Structure-activity of N-Glycosyl-1-pyridyl-1H-pyrazole-5-carboxamide as Inhibitors of Calcium Channels

    Institute of Scientific and Technical Information of China (English)

    ZHOU Yun-yun; LI Yu-xin; LI Yi-ming; YANG Xiao-ping; MAO Ming-zhen; LI Zheng-ming

    2013-01-01

    Carbohydrates,with broad-spectrum structures and biological functions,are key organic compounds in nature,along with nucleic acids and proteins.As part of our ongoing efforts to develop a new class of pesticides with novel mechanism of action,a series of novel N-glycosyl-l-pyridyl-lH-pyrazole-5-carboxamide was designed and synthesized via the reactions of glycosyl methanamides and pyridyl-pyrazole acid.The compounds were characterized by 1H NMR and 13C NMR.The bioassay results indicate that some of these compounds exhibit moderate insecticidal activities and assessed as potential inhibitors of calcium channels.The modulation of voltage-gated calcium channels by compounds 4a and 5a in the central neurons isolated from the third instar larvae of Spodoptera exigua was studied by whole-cell patch-clamp technique.In addition,compound 5a inhibits the recorded calcium currents reversible on washout.Experimental results also indicate that compound 5a did not release stored calcium from the Endoplasmic Reticulum.The present work demonstrates that N-glycosyl-l-pyridyl-lH-pyrazole-5-carboxamides cannot be used as possible inhibitors of calcium channels for developing novel pesticides.

  18. Morphological studies at subchondral bone structures in human early arthrosis. Final report

    International Nuclear Information System (INIS)

    Quantitative histomorphometric studies using an image analysis system were performed simultaneously on hyaline cartilage, calcified cartilage and subchondral cancellous bone of human tibial heads for detailed information about the pathogenesis of arthrosis. Joint structures need to be fully detected in three dimensions since measurement values are more affected by topographical aspects than by either age, or sex, or arthrosin stage. Mechanical factors were found to affect essentially the initiation and progression of arthrosis. Results are demonstrated in detail. (orig.)

  19. Computer-assisted modeling: Contributions of computational approaches to elucidating macromolecular structure and function: Final report

    International Nuclear Information System (INIS)

    The Committee, asked to provide an assessment of computer-assisted modeling of molecular structure, has highlighted the signal successes and the significant limitations for a broad panoply of technologies and has projected plausible paths of development over the next decade. As with any assessment of such scope, differing opinions about present or future prospects were expressed. The conclusions and recommendations, however, represent a consensus of our views of the present status of computational efforts in this field

  20. Transparent parsing : Head-driven processing of verb-final structures

    OpenAIRE

    Mulders, I.C.M.C.

    2002-01-01

    The conceptual guideline underlying this study is that the goal of processing theory should be to construct a transparent parser. A transparent parser is a parser which employs only properties and relations that are available in the grammar, without resorting to processing-specific notions. Under a lexicalist conception of grammar, such as the Minimalist Program, this conceptual guideline leads to the conclusion that the structure-building mechanism available to the human parser must be head-...

  1. BK channel modulators: a comprehensive overview

    DEFF Research Database (Denmark)

    Nardi, Antonio; Olesen, Søren-Peter

    2008-01-01

    the multitude of chemical entities claimed to be BK-modulating agents. Such chemical entities are, herein, classified by both origin and chemical structure in 1) Endogenous BK channel modulators and structural analogues 2) Naturally-occurring BK channel inhibitors and blockers 3) Synthetic BK channel...... inhibitors and blockers 4) Marketed and/or investigational drugs with BK-modulating side properties and structural analogues 5) Naturally-occurring BK channel openers and structural analogues 6) Synthetic BK channel openers. This review is intended to provide readers with current opinion on the BK channel as...... a drug target, the chemical structures of BK channel modulators, the structural and chemical features involved in the BK channel modulating activity and, where and when possible, with highlights of structure-activity relationships....

  2. Design of passive piezoelectric damping for space structures. Final Report Ph.D. Thesis

    Science.gov (United States)

    Hagood, Nesbitt W., IV; Aldrich, Jack B.; Vonflotow, Andreas H.

    1994-01-01

    Passive damping of structural dynamics using piezoceramic electromechanical energy conversion and passive electrical networks is a relatively recent concept with little implementation experience base. This report describes an implementation case study, starting from conceptual design and technique selection, through detailed component design and testing to simulation on the structure to be damped. About 0.5kg. of piezoelectric material was employed to damp the ASTREX testbed, a 500kg structure. Emphasis was placed upon designing the damping to enable high bandwidth robust feedback control. Resistive piezoelectric shunting provided the necessary broadband damping. The piezoelectric element was incorporated into a mechanically-tuned vibration absorber in order to concentrate damping into the 30 to 40 Hz frequency modes at the rolloff region of the proposed compensator. A prototype of a steel flex-tensional motion amplification device was built and tested. The effective stiffness and damping of the flex-tensional device was experimentally verified. When six of these effective springs are placed in an orthogonal configuration, strain energy is absorbed from all six degrees of freedom of a 90kg. mass. A NASTRAN finite element model of the testbed was modified to include the six-spring damping system. An analytical model was developed for the spring in order to see how the flex-tensional device and piezoelectric dimensions effect the critical stress and strain energy distribution throughout the component. Simulation of the testbed demonstrated the damping levels achievable in the completed system.

  3. Nuclear Structure Studies of Exotic Nuclei with Radioactive Ion Beams A Final Report

    Energy Technology Data Exchange (ETDEWEB)

    Winger, Jeff Allen [Mississippi State Univ., Mississippi State, MS (United States)

    2016-04-21

    Beta-decay spectroscopy provides important information on nuclear structure and properties needed to understand topics as widely varied as fundamental nuclear astrophysics to applied nuclear reactor design. However, there are significant limitations of our knowledge due to an inability to experimentally measure everything. Therefore, it is often necessary to rely on theoretical calculations which need to be vetted with experimental results. The focus of this report will be results from experimental research performed by the Principal Investigator (PI) and his research group at Mississippi State University in which the group played the lead role in proposing, implementing, performing and analyzing the experiment. This research was carried out at both the National Superconduction Cyclotron Laboratory (NSCL) at Michigan State University and the Holifield Radioactive Ion Beam Facility (HRIBF) at Oak Ridge National Laboratory. The primary emphasis of the research was the use of \\bdec spectroscopy as a tool to understand the evolution of nuclear structure in neutron-rich nuclei which could then be applied to improve theory and to increase the overall knowledge of nuclear structure.

  4. Inter- and intramolecular distance measurements by solid-state MAS NMR: Determination of gramicidin A channel dimer structure in hydrated phospholipid bilayers

    Energy Technology Data Exchange (ETDEWEB)

    Fu Riqiang; Cotten, Myriam; Cross, Timothy A. [Center for Interdisciplinary Magnetic Resonance, National High Magnetic Field Laboratory (United States)

    2000-03-15

    Distance constraints are an important complement to orientational constraints. While a high-resolution monomer structure of the ion channel forming polypeptide, gramicidin A, has been solved with 120 orientational constraints, the precise geometry of the dimer interface has not been characterized. Here, using both {sup 13}C and {sup 15}N labeled gramicidin A samples in hydrated phospholipid bilayers, both inter- and intramolecular distances have been measured with a recently developed simultaneous frequency and amplitude modulation (SFAM) solid-state NMR scheme. Using this approach {sup 15}N-{sup 13}C{sub 1} residual dipolar couplings across a hydrogen bond as small as 20 {+-} 2 Hz have been characterized. While such distances are on the order of 4.2 {+-} 0.2 A, the spectroscopy is complicated by rapid global motion of the molecular structure about the bilayer normal and channel axis. Consequently, the nominal 40 Hz dipolar coupling is averaged depending on the orientation of the internuclear vector with respect to the motional axis. The intermolecular distance confirmed the previously described monomeric structure, while the intramolecular distance across the monomer-monomer interface defined this junction and confirmed the previous model of this interface.

  5. Na2.9KMo12S14: a novel quaternary reduced molybdenum sulfide containing Mo12clusters with a channel structure

    OpenAIRE

    Gougeon, Patrick; Gall, Philippe; Diala, Salloum

    2013-01-01

    The crystal structure of trisodium potassium dodecamolybdenum tetradecasulfide, Na2.9 (2)KMo12S14, consists of Mo12S14S6 cluster units interconnected through interunit Mo-S bonds and delimiting channels in which the Na+ cations are disordered. The cluster units are centered at Wyckoff positions 2d and have point-group symmetry 3.2. The K atom lies on sites with 3.2 symmetry (Wyckoff site 2c) between two consecutive Mo12S14S6 units. One of the three independent S atoms and one Na atom lie on s...

  6. Na2.9KMo12S14: a novel quaternary reduced molybdenum sulfide containing Mo12 clusters with a channel structure

    OpenAIRE

    Patrick Gougeon; Philippe Gall; Diala Salloum

    2013-01-01

    The crystal structure of trisodium potassium dodecamolybdenum tetradecasulfide, Na2.9 (2)KMo12S14, consists of Mo12S14S6 cluster units interconnected through interunit Mo—S bonds and delimiting channels in which the Na+ cations are disordered. The cluster units are centered at Wyckoff positions 2d and have point-group symmetry 3.2. The K atom lies on sites with 3.2 symmetry (Wyckoff site 2c) between two consecutive Mo12S14S6 units. One of the three independent S atoms and one Na a...

  7. Nuclear structure studies at intermediate energy. Final report, September 1992--May 1995

    International Nuclear Information System (INIS)

    This constitutes a final report for a two-year grant ending 31 December, 1993, and an additional grant of $15,000 for the period 1 January 1993 to 30 September 1994. At the beginning of 1993 the group consisted of the Principal Investigator (N.H.), two full-time Research Associates (A.S. and V.S.), one part-time Research Associate (M.F.) and one graduate Research Assistant (D.M.). At present only the Principal Investigator in continuing. This report covers the period from September 1992 to April 1995. During this period experiment E 352, ''208 Pb and 60 Ni (p,t) reaction at 120 MeV'' was completed at the Indiana University Cyclotron Facility (IUCF). A Ph.D. has been awarded (D.M.) on the basis of this work and LAMPF (Los Alamos Meson Physics Facility) E 1201, ''The 40Ca, (p,2p) reaction at 800 MeV''. A paper on the 208Pb (p,t) experiment is being prepared for publication, In addition, five papers by members of this group, and four with other collaborators have been published since our last report (September 1992). At present we have one approved experiment (E 1201 above) in the LAMPF cue, but it is unlikely that it will ever be scheduled

  8. Theoretical studies in nuclear structure. Final progress report, June 1, 1991--July 31, 1996

    International Nuclear Information System (INIS)

    The general purview of the project is the theory of collective motion in atomic nuclei. The chief aim is to elucidate the phenomena of (1) anharmonic multiphonon excitations, and (2) collective tilted rotation, both of which are topics of considerable current interest. In the primary stage of an investigation it is often necessary to develop appropriate mathematical tools, as was the case here. In the next stage, the formalism must be tested on simple soluble models. The work described here is mainly concerned with these two stages. The final stage of realistic applications will require more time, manpower and, of course, the necessary funding. Some planning for this last stage has been carried out and anticipated problems axe briefly discussed. As it turns out, both of the above topics can be approached within the unified framework of a theorem that I developed, called the Cranking Bifurcation Theorem (CBT) to be described below. The CBT can be regarded as an outgrowth of the boson expansion method, which provides a general, and, in principal, exact formalism for treating collective excitations. We begin with a brief discussion of the CBT and then continue on to the applications

  9. [Intermediate/high energy probes and the structure of nuclei]: Final report

    International Nuclear Information System (INIS)

    We propose to expand our efforts to develop a theoretical framework for the quark and gluon structure of nuclei. We will continue to refine the ingredients of our current model, the quark cluster model (QCM), and initiate an ambitious program in the non-perturbative solution of field theories. We propose to first solve non-trivial model field theories in the strong coupling regime using the discretized light front quantization (DLFQ) scheme of Pauli and Brodsky. The goal of these initial efforts will be to develop fast and accurate methods for taking the continuum limit as well as to elucidate the consequences of spontaneous symmetry breaking within the DLFQ method. Subsequent efforts will address QCD in low dimensionality with the purpose of extracting non-perturbative predictions for quark and gluon amplitudes in few baryon systems. Simultaneously with this new initiative we will continue to develop extensions and applications of the QCM. We propose to continue predicting phenomena to be observed in high energy particle-nucleus collisions that reflect the rearrangement of quarks and gluons in nuclei. We will analyze the data from the SLAC NE3 experiment to discover whether they confirm the QCM prediction of ''steps'' in the ratio of nuclear structure functions when Bjorken x exceeds unity. In another effort, we will perform a search for narrow resonances in electron-positron interactions high in the continuum using the Bethe-Salpeter equation. These resonances are speculated to account for the positron peaks seen in the GSI heavy-ion experiments. We will also complete our development of microscopic effective Hamiltonians for nuclei structure which include the explicit treatment of delta resonances. These effective Hamiltonians will be used in constrained mean field calculations to evaluate conditions for nuclei to undergo a transition from nucleon matter to delta matter. 61 refs

  10. Improved Structure and Fabrication of Large, High-Power KHPS Rotors - Final Scientific/Technical Report

    Energy Technology Data Exchange (ETDEWEB)

    Corren, Dean [Verdant Power, Inc.; Colby, Jonathan [Verdant Power, Inc.; Adonizio, Mary Ann [Verdant Power, Inc.

    2013-01-29

    Verdant Power, Inc, working in partnership with the National Renewable Energy Laboratory (NREL), Sandia National Laboratories (SNL), and the University of Minnesota St. Anthony Falls Laboratory (SAFL), among other partners, used evolving Computational Fluid Dynamics (CFD) and Finite Element Analysis (FEA) models and techniques to improve the structure and fabrication of large, high-power composite Kinetic Hydropower System (KHPS) rotor blades. The objectives of the project were to: design; analyze; develop for manufacture and fabricate; and thoroughly test, in the lab and at full scale in the water, the improved KHPS rotor blade.

  11. A numerical and experimental study of wavy ice-structure in an asymmetrically cooled parallel-plate channel

    OpenAIRE

    Weigand, Bernhard; Beer, Hans de

    1992-01-01

    Ice formation of flowing water in a pipe or a channel, whose wall is kept at a uniform temperature below the freezing temperature of the water, is a basic engineering problem. It Introduces many practical problems, such as pressure drop, diminution of flow rate and sometime, breakage of the pipe as a result of flow blockage by ice. The phenomenon of freezing of flowing water involves interactions between the turbulent flow, the shape of the ice layer and the heat transfer at the ice-water int...

  12. The Structure Difference in the Southern Margin of the Dangerous Grounds: Implications for the Final Evolution of the South China Sea

    Science.gov (United States)

    Xi, P.; Shen, C.; Zhao, Z.; Xie, X.; Mei, L.; Gong, J.; Huang, X.

    2015-12-01

    We interpret two multi-channel seismic reflection profiles, more than 900 km across the entire Dangerous Grounds, locating in east and west of the southern margin of the South China Sea respectively. Eight Cenozoic sequence boundaries are determined as well as three tectono-stratigraphic units. Detailed analysis of extensional features and unconformities revealed the tectonic in the east and west. Early extension (syn-rifting sequence) occurred in the two profiles during continental rifting, which lasted from Palaeocene to Early Oligocene, and resulted in formation of half-grabens and rotated fault-blocks. Late extension (drift-rifting sequence) has the significant difference in the both profiles. The eastern Dangerous Grounds entered rifting-depression stage and some compressional deformation occurred in the Reed Bank basin at about the beginning of Early Miocene, probably resulting from the collision of the Dangerous Grounds and the Sabah-Cagayan Arc. The western Dangerous Grounds was still in rifting until the end of Early Miocene, forming the MMU or DRU which is strongly erosional and represents a major break in sedimentation and/or erosion in partial area. Denudation fold and inverted fault can be distinguished blow the MMU, indicating the cessation of the South China Sea accompanied the NW compression, while the boundary corresponding the MMU is nearly a plano-conformity in the east. The thermal sag (post-rifting sequence) is characterized by non-faulted draping strata in the whole area. The different structure in east and west may be related to the final evolution of the SCS. When the proto-SCS closed in a scissor fashion plus the clockwise rotation of Borneo, the initial collision (c.20Ma) appeared in east part building the NW foreland basin system from Palawan Trough to Reed Bank in a short-live process, while the west part was drifting southwards until c.15Ma to form the even more remarkable foreland system from Borneo Trough to deep-water Sarawak.

  13. Two-Dimensional Hydrodynamic Modeling and Analysis of the Proposed Channel Modifications and Grade Control Structure on the Blue River near Byram's Ford Industrial Park, Kansas City, Missouri

    Science.gov (United States)

    Huizinga, Richard J.

    2007-01-01

    The Blue River Channel Modification project being implemented by the U.S. Army Corps of Engineers (USACE) is intended to provide flood protection within the Blue River valley in the Kansas City, Mo., metropolitan area. In the latest phase of the project, concerns have arisen about preserving the Civil War historic area of Byram's Ford and the associated Big Blue Battlefield while providing flood protection for the Byram's Ford Industrial Park. In 1996, the USACE used a physical model built at the Waterways Experiment Station (WES) in Vicksburg, Miss., to examine the feasibility of a proposed grade control structure (GCS) that would be placed downstream from the historic river crossing of Byram's Ford to provide a subtle transition of flow from the natural channel to the modified channel. The U.S. Geological Survey (USGS), in cooperation with the USACE, modified an existing two-dimensional finite element surface-water model of the river between 63d Street and Blue Parkway (the 'original model'), used the modified model to simulate the existing (as of 2006) unimproved channel and the proposed channel modifications and GCS, and analyzed the results from the simulations and those from the WES physical model. Modifications were made to the original model to create a model that represents existing (2006) conditions between the north end of Swope Park immediately upstream from 63d Street and the upstream limit of channel improvement on the Blue River (the 'model of existing conditions'). The model of existing conditions was calibrated to two measured floods. The model of existing conditions also was modified to create a model that represents conditions along the same reach of the Blue River with proposed channel modifications and the proposed GCS (the 'model of proposed conditions'). The models of existing conditions and proposed conditions were used to simulate the 30-, 50-, and 100-year recurrence floods. The discharge from the calibration flood of May 15, 1990, also

  14. Design of step composition gradient thin film transistor channel layers grown by atomic layer deposition

    International Nuclear Information System (INIS)

    In this study, we proposed the artificially designed channel structure in oxide thin-film transistors (TFTs) called a “step-composition gradient channel.” We demonstrated Al step-composition gradient Al-Zn-O (AZO) channel structures consisting of three AZO layers with different Al contents. The effects of stacking sequence in the step-composition gradient channel on performance and electrical stability of bottom-gate TFT devices were investigated with two channels of inverse stacking order (ascending/descending step-composition). The TFT with ascending step-composition channel structure (5 → 10 → 14 at. % Al composition) showed relatively negative threshold voltage (−3.7 V) and good instability characteristics with a reduced threshold voltage shift (Δ 1.4 V), which was related to the alignment of the conduction band off-set within the channel layer depending on the Al contents. Finally, the reduced Al composition in the initial layer of ascending step-composition channel resulted in the best field effect mobility of 4.5 cm2/V s. We presented a unique active layer of the “step-composition gradient channel” in the oxide TFTs and explained the mechanism of adequate channel design

  15. Design of step composition gradient thin film transistor channel layers grown by atomic layer deposition

    Energy Technology Data Exchange (ETDEWEB)

    Ahn, Cheol Hyoun; Hee Kim, So; Gu Yun, Myeong; Koun Cho, Hyung, E-mail: chohk@skku.edu [School of Advanced Materials Science and Engineering, Sungkyunkwan University, 2066 Seobu-ro, Jangan-gu, Suwon, Gyeonggi-do 440-746 (Korea, Republic of)

    2014-12-01

    In this study, we proposed the artificially designed channel structure in oxide thin-film transistors (TFTs) called a “step-composition gradient channel.” We demonstrated Al step-composition gradient Al-Zn-O (AZO) channel structures consisting of three AZO layers with different Al contents. The effects of stacking sequence in the step-composition gradient channel on performance and electrical stability of bottom-gate TFT devices were investigated with two channels of inverse stacking order (ascending/descending step-composition). The TFT with ascending step-composition channel structure (5 → 10 → 14 at. % Al composition) showed relatively negative threshold voltage (−3.7 V) and good instability characteristics with a reduced threshold voltage shift (Δ 1.4 V), which was related to the alignment of the conduction band off-set within the channel layer depending on the Al contents. Finally, the reduced Al composition in the initial layer of ascending step-composition channel resulted in the best field effect mobility of 4.5 cm{sup 2}/V s. We presented a unique active layer of the “step-composition gradient channel” in the oxide TFTs and explained the mechanism of adequate channel design.

  16. Final Report: Computer Simulation of Osmosis and Reverse Osmosis in Structured Membranes

    Energy Technology Data Exchange (ETDEWEB)

    Sohail Murad

    2012-01-03

    Molecular simulation methods were developed as part of this project to increase our fundamental understanding of membrane based separation systems. Our simulations clarified for example that steric (size) effects had a significant impact on the desalination membranes. Previously it was thought the separation was entirely driven by coulombic force (attractive/repulsive forces at the membrane surfaces). Steric effects played an important role, because salt ions in brackish water are never present alone, but are strongly hydrated which effectively increases their size, and makes it impossible to enter a membrane, while the smaller water molecules can enter more readily. Membrane surface effects did play a role in increasing the flux of water, but not in the separation itself. In addition we also developed simulation methods to study ion exchange, gas separations, and pervaporation. The methods developed were used to once again increase our fundamental understanding of these separation processes. For example our studies showed that when the separation factor of gases in membranes can be significantly affected by the presence of another gas, it is generally because the separation mechanism has changed. For example in the case of nitrogen and carbon dioxide, in their pure state the separation factor is determined by diffusion, while in mixtures it is influenced more by adsorption in the membrane (zeolite in our case) Finally we developed a new technique using the NMR chemical shift to determine intermolecular interactions for mixtures. For polar-nonpolar systems such as Xe dissolved in water we were able to significantly improve the accuracy of gas solubilities, which are very sensitive to the cross interaction between water and Xe.

  17. Nuclear structure studies of transitional nuclei. Final report, January 1, 1979-December 31, 1980

    International Nuclear Information System (INIS)

    The (n,n'#betta#) reaction has been used to syudy systematically the low-lying level structures of stable heavy transitional nuclei. Detailed #betta#-ray excitation functions and angular distibutions have permitted the characeization of low-lyig nuclear states. Particular emphasis has been placed on understanding collective excitations of both positive and negative parity, and questions regarding nuclear shapes, deformation effects, and the applicbility of various nuclear models to these nuclei have been addressed. Completed studies of 194Pt and 198Pt reveal significant structural differences between these nuclei, while in complementary investigations the strucures of 190Os, 192Os, and 200Hg have been examined. Comparisons of IBA and BET calculations with the properties of the positive-parity states are generally favorable, with only the low-lying O+ excitations providing significant inconsistences. Cross section symmematics for the (n,n'#betta#) reaction were explored and, where possible, #betta#-ray studies have been complemented by neutron detection time-of-flight measurements

  18. Improving Robustness Assessment Methodologies for Structures Impacted by Missiles (IRIS-2012) - Final Report

    International Nuclear Information System (INIS)

    This report documents the results and conclusions of the second phase of the Integrity and Ageing of Components and Structures Working Group (WGIAGE) activity 'Improving Robustness assessment of structures Impacted by missiles', called IRIS-2012. The objective of the activity was to conduct a post-test benchmark study to improve models and evaluation techniques used in IRIS-2010. The benchmark was open to the new participants and some of IRIS-2010 participants did not take part of IRIS-2012. For this reason the team numbers in two benchmarks are different and to make direct comparisons it is necessary to have both lists. For IRIS-2010 benchmark a series of repeated test was performed: two bending rupture tests and three punching rupture tests. For IRIS-2012 and based on recommendation from IRIS-2010, tri-axial tests and Brazilian tensile test were additionally performed in order to calibrate constitutive models. The benchmark was officially launched in February 2012 with the participation of twenty six teams from twenty different institutions (Safety Authorities, TSOs, Utilities, Vendors, Research Institutes and Consulting Companies), from ten different countries from Europe, North America and Asia (plus 1 international organisation). A three day workshop was convened in October 2012 in Ottawa, Ontario, Canada where each participating team presented and discussed their results and performed simulations. Based on IRIS-2010 results and recommendations, OECD/NEA members recognized that there was a need to continue the work on understanding and improving simulation of structural impact. The goal of the new IRIS-2012 benchmark was to: 1) Update and improve existing FE models, for teams that participated in IRIS-2010, or to create new models for new participants. In order to improve FE models it was requested to: Simulate uni-axial unconfined concrete test and tri-axial concrete tests, using the results provided by IRSN, as well as the Brazilian test (concrete tensile

  19. Final Report for Geometric Analysis for Data Reduction and Structure Discovery DE-FG02-10ER25983, STRIPES award # DE-SC0004096

    Energy Technology Data Exchange (ETDEWEB)

    Vixie, Kevin R

    2014-11-27

    This is the final report for the project "Geometric Analysis for Data Reduction and Structure Discovery" in which insights and tools from geometric analysis were developed and exploited for their potential to large scale data challenges.

  20. Coupled channel analysis of s-wave ππ and K anti-K photoproduction

    International Nuclear Information System (INIS)

    We present a coupled channel partial wave analysis of non-diffractive S-wave π+π- and K+K- photoproduction focusing on the K anti-K threshold. Final state interactions are included. We calculate total cross sections, angular and effective mass distributions in both ππ and K anti-K channels. Our results indicate that these processes are experimentally measurable and valuable information on the f0(980) resonance structure can be obtained. (author)

  1. Self-assembly of channel type β-CD dimers induced by dodecane.

    Science.gov (United States)

    Zhou, Chengcheng; Cheng, Xinhao; Zhao, Qiang; Yan, Yun; Wang, Jide; Huang, Jianbin

    2014-01-01

    Cyclodextrins (CDs) can hardly self-assemble into well-defined structures. Here we report if they preassemble into channel type dimers assisted by dodecane, well-defined vesicles and bricks can be formed. Unlike the traditional self-assembly of amphiphilic molecules driven by hydrophobic effect, the self-assembly of the channel type dodecane@2β-CD supramolecular building block is predoninantly driven by hydrogen-bonds. More water molecules are found in the lyophilized vesicles than in the bricks, suggesting water molecules play an important role in the self-assembly of the channel-type dimers of β-CD. The amount of structural water in the self-assembly is closely related to the curvature of the final self-assembled structures. Our work reveals that the channel-type dimer of β-CD may represent a new sort of building block for advanced structures. PMID:25532046

  2. Laser Wakefield Acceleration: Structural and Dynamic Studies. Final Technical Report ER40954

    Energy Technology Data Exchange (ETDEWEB)

    Downer, Michael

    2014-12-19

    Particle accelerators enable scientists to study the fundamental structure of the universe, but have become the largest and most expensive of scientific instruments. In this project, we advanced the science and technology of laser-plasma accelerators, which are thousands of times smaller and less expensive than their conventional counterparts. In a laser-plasma accelerator, a powerful laser pulse exerts light pressure on an ionized gas, or plasma, thereby driving an electron density wave, which resembles the wake behind a boat. Electrostatic fields within this plasma wake reach tens of billions of volts per meter, fields far stronger than ordinary non-plasma matter (such as the matter that a conventional accelerator is made of) can withstand. Under the right conditions, stray electrons from the surrounding plasma become trapped within these “wake-fields”, surf them, and acquire energy much faster than is possible in a conventional accelerator. Laser-plasma accelerators thus might herald a new generation of compact, low-cost accelerators for future particle physics, x-ray and medical research. In this project, we made two major advances in the science of laser-plasma accelerators. The first of these was to accelerate electrons beyond 1 gigaelectronvolt (1 GeV) for the first time. In experimental results reported in Nature Communications in 2013, about 1 billion electrons were captured from a tenuous plasma (about 1/100 of atmosphere density) and accelerated to 2 GeV within about one inch, while maintaining less than 5% energy spread, and spreading out less than ½ milliradian (i.e. ½ millimeter per meter of travel). Low energy spread and high beam collimation are important for applications of accelerators as coherent x-ray sources or particle colliders. This advance was made possible by exploiting unique properties of the Texas Petawatt Laser, a powerful laser at the University of Texas at Austin that produces pulses of 150 femtoseconds (1 femtosecond is 10

  3. Advancements in sensing and perception using structured lighting techniques :an LDRD final report.

    Energy Technology Data Exchange (ETDEWEB)

    Novick, David Keith; Padilla, Denise D.; Davidson, Patrick A. Jr. (.; .); Carlson, Jeffrey J.

    2005-09-01

    This report summarizes the analytical and experimental efforts for the Laboratory Directed Research and Development (LDRD) project entitled ''Advancements in Sensing and Perception using Structured Lighting Techniques''. There is an ever-increasing need for robust, autonomous ground vehicles for counterterrorism and defense missions. Although there has been nearly 30 years of government-sponsored research, it is undisputed that significant advancements in sensing and perception are necessary. We developed an innovative, advanced sensing technology for national security missions serving the Department of Energy, the Department of Defense, and other government agencies. The principal goal of this project was to develop an eye-safe, robust, low-cost, lightweight, 3D structured lighting sensor for use in broad daylight outdoor applications. The market for this technology is wide open due to the unavailability of such a sensor. Currently available laser scanners are slow, bulky and heavy, expensive, fragile, short-range, sensitive to vibration (highly problematic for moving platforms), and unreliable for outdoor use in bright sunlight conditions. Eye-safety issues are a primary concern for currently available laser-based sensors. Passive, stereo-imaging sensors are available for 3D sensing but suffer from several limitations : computationally intensive, require a lighted environment (natural or man-made light source), and don't work for many scenes or regions lacking texture or with ambiguous texture. Our approach leveraged from the advanced capabilities of modern CCD camera technology and Center 6600's expertise in 3D world modeling, mapping, and analysis, using structured lighting. We have a diverse customer base for indoor mapping applications and this research extends our current technology's lifecycle and opens a new market base for outdoor 3D mapping. Applications include precision mapping, autonomous navigation, dexterous

  4. Smart structures for application in ceramic barrier filter technology. Final report, August 1991--August 1994

    Energy Technology Data Exchange (ETDEWEB)

    Weinstein, S.J.; Lippert, T.E

    1994-12-01

    High temperature optical fiber sensors were developed to measure the in-service stressing that occurs in ceramic barrier filter systems. The optical fiber sensors were based on improvements to the sensor design developed under the DOE/METC Smart Structures for Fossil Energy Applications contract no. DE-AC21-89MC25159. In-house application testing of these sensors on both candle and cross-flow filters were performed in the Westinghouse Science and Technology Center High-Temperature, High-Pressure Filter Test Facility and the results analyzed. This report summarizes the sensor developments, methods to apply the sensors to the filters for in-situ testing, and the test results from the four in-house tests that were performed.

  5. Stress, seismicity and structure of shallow oil reservoirs of Clinton County, Kentucky. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Hamilton-Smith, T. [Kentucky Geological Survey, Lexington, KY (United States)

    1995-12-12

    Between 1993 and 1995 geophysicists of the Los Alamos National Laboratory, in a project funded by the US Department of Energy, conducted extensive microseismic monitoring of oil production in the recently discovered High Bridge pools of Clinton County and were able to acquire abundant, high-quality data in the northern of the two pools. This investigation provided both three-dimensional spatial and kinetic data relating to the High Bridge fracture system that previously had not been available. Funded in part by the Los Alamos National Laboratory, the Kentucky Geological Survey committed to develop a geological interpretation of these geophysical results, that would be of practical benefit to future oils exploration. This publication is a summary of the results of that project. Contents include the following: introduction; discovery and development; regional geology; fractured reservoir geology; oil migration and entrapment; subsurface stress; induced seismicity; structural geology; references; and appendices.

  6. Characterization of radon penetration of different structural domains of concrete. Final project report

    International Nuclear Information System (INIS)

    This report documents the research activities by Rogers and Associates Engineering Corporation on grant DE-FG03-93ER61600 during the funded project period from August 1993 to April 1996. The objective of this research was to characterize the mechanisms and rates of radon gas penetration of the different structural domains of the concrete components of residential floor slabs, walls, and associated joints and penetrations. The research was also to characterize the physical properties of the concretes in these domains to relate their radon resistance to their physical properties. These objectives support the broader goal of characterizing which, if any, concrete domains and associated properties constitute robust barriers to radon and which permit radon entry, either inherently or in ways that could be remediated or avoided

  7. Influence of flow structure on the propagation of hydrogen-air flames. Final report

    International Nuclear Information System (INIS)

    For assessing the danger potential of a hydrogen burn during a postulated LOCA with core meltdown a detailed knowledge of the combustion behaviour of hydrogen is necessary. The reached flame velocities and thus the pressure loads imposed on the containment structure highly dependent on mixture composition, thermodynamic boundary conditions, the interactions between turbulence inherent to the combustion induced gas motion and the flame front. This report involves the influence of turbulence on the burning velocities of premixed hydrogen-air flames. The work comprises experimental investigations and a thorough discussion of the results obtained in comparison with the current literature. The combustion tests were performed in an explosion tube closed at both ends (length: 6 m, diameter: 66 m). (orig./HP)

  8. TRP channels: an overview

    DEFF Research Database (Denmark)

    Pedersen, Stine Falsig; Owsianik, Grzegorz; Nilius, Bernd

    2005-01-01

    plethora of data on the roles of TRPs in a variety of tissues and species, including mammals, insects, and yeast. The present review summarizes the most pertinent recent evidence regarding the structural and functional properties of TRP channels, focusing on the regulation and physiology of mammalian TRPs.......The TRP ("transient receptor potential") family of ion channels now comprises more than 30 cation channels, most of which are permeable for Ca2+, and some also for Mg2+. On the basis of sequence homology, the TRP family can be divided in seven main subfamilies: the TRPC ('Canonical') family, the...... TRPV ('Vanilloid') family, the TRPM ('Melastatin') family, the TRPP ('Polycystin') family, the TRPML ('Mucolipin') family, the TRPA ('Ankyrin') family, and the TRPN ('NOMPC') family. The cloning and characterization of members of this cation channel family has exploded during recent years, leading to a...

  9. Sensing with Ion Channels

    CERN Document Server

    Martinac, Boris

    2008-01-01

    All living cells are able to detect and translate environmental stimuli into biologically meaningful signals. Sensations of touch, hearing, sight, taste, smell or pain are essential to the survival of all living organisms. The importance of sensory input for the existence of life thus justifies the effort made to understand its molecular origins. Sensing with Ion Channels focuses on ion channels as key molecules enabling biological systems to sense and process the physical and chemical stimuli that act upon cells in their living environment. Its aim is to serve as a reference to ion channel specialists and as a source of new information to non specialists who want to learn about the structural and functional diversity of ion channels and their role in sensory physiology.

  10. The 3D flow structures generated by a pair of cubic roughness elements in a turbulent channel flow resolved using holographic microscopy

    Science.gov (United States)

    Gao, Jian; Katz, Joseph

    2015-11-01

    In studies of turbulent flows over rough walls, considerable efforts have been put on the overall effects of roughness parameters such as roughness height and spatial arrangement on the mean profiles and turbulence statistics. However there is very little experimental data on the generation, evolution, and interaction among roughness-initiated turbulent structures, which are essential for elucidating the near-wall turbulence production. As a first step, we approach this problem experimentally by applying digital holographic microscopy (DHM) to measure the flow and turbulence around a pair of cubic roughness elements embedded in the inner part of a high Reynolds number turbulent channel flow (Reτ = 2000 - 5000). The ratio of half-channel height (h) to cube height (a) is 25, and the cubes are aligned in the spanwise direction, and separated by 1.5 a. DHM provides high-resolution three-dimensional (3D) three-component (3C) velocity distributions. The presentation discusses methods to improve the data accuracy, both during the hologram acquisition and particle tracking phases. First, we compare and mutually validate velocity fields obtained from a two-view DHM system. Subsequently, during data processing, the seven criteria used for particle tracking is validated and augmented by planar tracking of particle image projections. Sample results reveal instantaneous 3D velocity fields and vortical structures resolved in fine details of several wall units. Funded by NSF and ONR.

  11. QKD Quantum Channel Authentication

    CERN Document Server

    Kosloski, J T

    2006-01-01

    Several simple yet secure protocols to authenticate the quantum channel of various QKD schemes, by coupling the photon sender's knowledge of a shared secret and the QBER Bob observes, are presented. It is shown that Alice can encrypt certain portions of the information needed for the QKD protocols, using a sequence whose security is based on computational-complexity, without compromising all of the sequence's entropy. It is then shown that after a Man-in-the-Middle attack on the quantum and classical channels, there is still enough entropy left in the sequence for Bob to detect the presence of Eve by monitoring the QBER. Finally, it is shown that the principles presented can be implemented to authenticate the quantum channel associated with any type of QKD scheme, and they can also be used for Alice to authenticate Bob.

  12. Demystifying Mechanosensitive Piezo Ion Channels.

    Science.gov (United States)

    Xu, X Z Shawn

    2016-06-01

    Mechanosensitive channels mediate touch, hearing, proprioception, and blood pressure regulation. Piezo proteins, including Piezo1 and Piezo2, represent a new class of mechanosensitive channels that have been reported to play key roles in most, if not all, of these modalities. The structural architecture and molecular mechanisms by which Piezos act as mechanosensitive channels, however, remain mysterious. Two new studies have now provided critical insights into the atomic structure and molecular basis of the ion permeation and mechano-gating properties of the Piezo1 channel. PMID:27164907

  13. Biophysics of BK Channel Gating.

    Science.gov (United States)

    Pantazis, A; Olcese, R

    2016-01-01

    BK channels are universal regulators of cell excitability, given their exceptional unitary conductance selective for K(+), joint activation mechanism by membrane depolarization and intracellular [Ca(2+)] elevation, and broad expression pattern. In this chapter, we discuss the structural basis and operational principles of their activation, or gating, by membrane potential and calcium. We also discuss how the two activation mechanisms interact to culminate in channel opening. As members of the voltage-gated potassium channel superfamily, BK channels are discussed in the context of archetypal family members, in terms of similarities that help us understand their function, but also seminal structural and biophysical differences that confer unique functional properties. PMID:27238260

  14. Unravelling lignin formation and structure. Final report, April 1, 1988--March 31, 1991

    Energy Technology Data Exchange (ETDEWEB)

    Lewis, N.G. [Washington State Univ., Pullman, WA (United States). Inst. of Biological Chemistry

    1991-12-31

    During this study, we established that the Fagaceae exclusively accumulate Z-monolignois/glucosides, and not the E-isomers. Evidence for the presence of a novel E{yields}Z isomerse has been obtained. Our pioneering work in lignin biosynthesis and structure in situ has also progressed smoothly. We established the bonding environments of a woody angiosperm, Leucanea leucocephala, as well as wheat (T. aestivum) and tobacco (N. tabacum). A cell culture system from Pinus taeda was developed which seems ideal for investigating the early stages of lignification. These cultures excrete peroxidase isozymes, considered to be specifically involved in lignin deposition. We also studied the effect of the putative lignin-degrading enzyme, lignin peroxidase, on monolignols and dehydropolymerisates therefrom. In all cases, polymerization was observed, and not degradation; these polymers are identical to that obtained with horseradish peroxidases/H{sub 2}O{sub 2}. It seems inconceivable that these enzymes can be considered as being primarily responsible for lignin biodegradation.

  15. Surface structure and stereochemical properties of self-assembled monolayer materials. Final Report

    International Nuclear Information System (INIS)

    This document reports the progress the authors have made in support of their proposal to generate well-characterized, well-ordered organic surfaces and to impinge upon the array of oriented organic molecules a well-collimated beam of radical atoms at a well-defined angle of incidence. Using the intensity of helium atom diffraction from the organic surface as a measure of the number of unreacted molecules at the surface, the authors will measure the rate of the reaction. They will then vary the angle of incidence of the reactive atom beam and repeat the measurement. In this manner they plan to map out the reactivity of the molecules on the surface as a function of the angle of incidence of the reactive moiety. To carry out this experiment requires that two fields of research be brought together: (1) molecular beam technology and (2) the science/art of growing well-ordered organic surfaces. The first half of this report describes recent helium diffraction results from molecular beam deposited organic monolayers (structural layer characterization work). The second half reports progress in constructing and characterizing the reactive atom (oxygen) beam source.

  16. Electronic structure of defects in oxides. Final report, December 1, 1980-November 30, 1981

    International Nuclear Information System (INIS)

    Details of the electronic structure of F-type centers and charge trapping in the series of oxides SrO, CaO, MgO, α-Al2O3 and MgAl2O4 have been determined using photoconductivity, luminescence, and fluorescence lifetimes. Measurements were made over the spectral range 1.5 to 6.5 eV and over the temperature range 4 to 350 K. The centers were introduced into SrO by electron, proton or neutron bombardment, into CaO, MgO, and α-Al2O3 by electron or neutron bombardment, or thermochemical reduction, and into MgAl2O4 by particle bombardment. In some cases, notably CaO, MgO, and α-Al2O3 exhibit phosphorescence near room temperature, with the emission occurring at the wavelength corresponding to the F center. Our work suggests that the electron trap involved is H- ions, but this has only so far been confirmed for MgO

  17. Final report of LDRD project: Electromagnetic impulse radar for detection of underground structures

    Energy Technology Data Exchange (ETDEWEB)

    Loubriel, G.; Aurand, J.; Buttram, M.; Zutavern, F.; Brown, D.; Helgeson, W.

    1998-03-01

    This report provides a summary of the LDRD project titled: Electromagnetic impulse radar for the detection of underground structures. The project met all its milestones even with a tight two year schedule and total funding of $400 k. The goal of the LDRD was to develop and demonstrate a ground penetrating radar (GPR) that is based on high peak power, high repetition rate, and low center frequency impulses. The idea of this LDRD is that a high peak power, high average power radar based on the transmission of short impulses can be utilized effect can be utilized for ground penetrating radar. This direct time-domain system the authors are building seeks to increase penetration depth over conventional systems by using: (1) high peak power, high repetition rate operation that gives high average power, (2) low center frequencies that better penetrate the ground, and (3) short duration impulses that allow for the use of downward looking, low flying platforms that increase the power on target relative to a high flying platform. Specifically, chirped pulses that are a microsecond in duration require (because it is difficult to receive during transmit) platforms above 150 m (and typically 1 km) while this system, theoretically could be at 10 m above the ground. The power on target decays with distance squared so the ability to use low flying platforms is crucial to high penetration. Clutter is minimized by time gating the surface clutter return. Short impulses also allow gating (out) the coupling of the transmit and receive antennas.

  18. STRUCTURAL FLUCTUATIONS, ELECTRICAL RESPONSE AND THE RELIABILITY OF NANOSTRUCTURES (FINAL REPORT)

    Energy Technology Data Exchange (ETDEWEB)

    Philip J. Rous; Ellen D. Williams; Michael S. Fuhrer

    2006-07-31

    The goal of the research supported by DOE-FG02-01ER45939 was to synthesize a number of experimental and theoretical approaches to understand the relationship between morphological fluctuations, the electrical response and the reliability (failure) of metallic nanostructures. The primary focus of our work was the study of metallic nanowires which we regard as prototypical of nanoscale interconnects. Our research plan has been to link together these materials properties and behaviors by understanding the phenomenon of, and the effects of electromigration at nanometer length scales. The thrust of our research has been founded on the concept that, for nanostructures where the surface-to-volume ratio is necessarily high, surface diffusion is the dominant mass transport mechanism that governs the fluctuations, electrical properties and failure modes of nanostructures. Our approach has been to develop experimental methods that permit the direct imaging of the electromagnetic distributions within nanostructures, their structural fluctuations and their electrical response. This experimental research is complemented by a parallel theoretical and computational program that describes the temporal evolution of nanostructures in response to current flow.

  19. Exploring the Dynamics of the TWIK-1 Channel.

    Science.gov (United States)

    Oakes, Victoria; Furini, Simone; Pryde, David; Domene, Carmen

    2016-08-23

    Potassium channels in the two-pore domain family (K2P) have various structural attributes that differ from those of other K(+) channels, including a dimeric assembly constituted of nonidentical domains and an expansive extracellular cap. Crystallization of the prototypical K2P channel, TWIK-1, finally revealed the structure of these characteristics in atomic detail, allowing computational studies to be undertaken. In this study, we performed molecular-dynamics simulations for a cumulative time of ∼1 μs to discern the mechanism of ion transport throughout TWIK-1. We observed the free passage of ions beneath the extracellular cap and identified multiple high-occupancy sites in close proximity to charged residues on the protein surface. Despite the overall topological similarity of the x-ray structure of the selectivity filter to other K(+) channels, the structure diverges significantly in molecular-dynamics simulations as a consequence of nonconserved residues in both pore domains contributing to the selectivity filter (T118 and L228). The behavior of such residues has been linked to channel inactivation and the phenomenon of dynamic selectivity, where TWIK-1 displays robust Na(+) inward flux in response to subphysiological K(+) concentrations. PMID:27558721

  20. Investigation on structural distortions in NBCsub(x)-single crystals by means of temperature dependent channeling measurements

    International Nuclear Information System (INIS)

    Investigations using channeling-experiments were performed on the magnitude of the static displacements of the niobium and the carbon atoms around C-vacancies in NbCsub(x)-single crystals (x = 0.82-0.98). Rutherford backscattering with 2 MeV He+-particles and the 12C(d,p)13C-nuclear reaction with 1.27 MeV deuterons were used for the determination of the interaction yields from Nb and C, respectively. As a function of temperature the half widths at half maximum psisub(1/2) of the angular scans for Nb clearly increased with decreasing temperature in the range from 295 K to 78 K and then remained nearly constant down to 4 K. As a function of C-vacancy concentration in the range x = 0.98-0.90 psisub(1/2) also clearly decreased and then remained approximately constant in the range of x = 0.90-0.82. The C-yield did not depend on the C-concentration. The results of the channeling experiments were interpreted by Monte-Carlo-simulation calculations. A linear increase of the mean static three-dimensional displacements of the Nb-atoms form 0.025 Angstroem to 0.10 Angstroem was found in the concentration range of x = 0.98-0.90 and then the values remained nearly constant in the range of 0.90-0.82. The static displacements of the C-atoms lay below the detection limit of 0.025 Angstroem. The strain field around a vacancy for low vacancy concentrations (x = 0.98-0.96) was calculated employing the Kanzaki-method. (orig./GSCH)

  1. Separated Structure Functions for the Exclusive Electroproduction of K+Lambda and K+Sigma0 Final States

    Energy Technology Data Exchange (ETDEWEB)

    Pawel Ambrozewicz; Daniel Carman; Rob Feuerbach; Mac Mestayer; Brian Raue; Reinhard Schumacher; Avtandil Tkabladze

    2006-11-19

    We report measurements of the exclusive electroproduction of K{sup +}{Lambda} and K{sup +}{Sigma}{sup 0} final states from a proton target using the CLAS detector at the Thomas Jefferson National Accelerator Facility. The separated structure functions {sigma}{sub T}, {sigma}{sub L},{sigma}{sub TT}, and {sigma}{sub LT} were extracted from the {Phi}- and {epsilon}-dependent differential cross sections taken with electron beam energies of 2.567, 4.056, and 4.247 GeV. This analysis represents the first {sigma}{sub L}/{sigma}{sub T} separation with the CLAS detector, and the first measurement of the kaon electroproduction structure functions away from parallel kinematics. The data span a broad range of momentum transfers from 0.5 {le} Q{sup 2} {le} 2.8 GeV{sup 2} and invariant energy from 1.6 {le} W {le} 2.4 GeV, while spanning nearly the full center-of-mass angular range of the kaon. The separated structure functions reveal clear differences between the production dynamics for the {Lambda} and {Sigma}{sup 0} hyperons. These results provide an unprecedented data sample with which to constrain current and future models for the associated production of strangeness, which will allow for a better understanding of the underlying resonant and non-resonant contributions to hyperon production.

  2. Separated structure functions for the exclusive electroproduction of K+Λ and K+Σ0 final states

    International Nuclear Information System (INIS)

    We report measurements of the exclusive electroproduction of K+Λ and K+Σ0 final states from a proton target using the Continuous Electron Beam Accelerator Facility (CEBAF) large-acceptance spectrometer (CLAS) detector at the Thomas Jefferson National Accelerator Facility. The separated structure functions σT,σL,σTT, and σLT were extracted from the Φ- and ε-dependent differential cross sections taken with electron beam energies of 2.567, 4.056, and 4.247 GeV. This analysis represents the first σL/σT separation with the CLAS detector, and the first measurement of the kaon electroproduction structure functions away from parallel kinematics. The data span a broad range of momentum transfers from 0.5≤Q2≤2.8GeV2 and invariant energy from 1.6≤W≤2.4 GeV, while spanning nearly the full center-of-mass angular range of the kaon. The separated structure functions reveal clear differences between the production dynamics for the Λ and Σ0 hyperons. These results provide an unprecedented data sample with which to constrain current and future models for the associated production of strangeness, which will allow for a better understanding of the underlying resonant and nonresonant contributions to hyperon production

  3. 阵列布局对机载 MIMO 信道容量影响%The Effect of Array Structures on Airborne MIMO Channel Capacity

    Institute of Scientific and Technical Information of China (English)

    陈自力; 高喜俊

    2015-01-01

    为进一步提高空地(air-to-ground,ATG)下行通信容量,建立了三维基于散射体分布的空地 MIMO 单跳同心椭圆环信道模型,结合机载多入多出(multiple input multiple output,MIMO)均匀线阵以及圆阵布局方案,推导了基于阵列结构分量的机载 MIMO 信道相关矩阵,为通过合理设计机载 MIMO 天线结构来提升 ATG 传输速率,分析了阵列结构参数对遍历容量的影响。仿真表明,受 ATG 远距离通信影响,需要扩大天线间隔来提高 MIMO信道容量,且相比于线阵布局,圆阵布局更加适应飞行姿态变化,获得较高的信道容量。%To improve the communication capacity of air-to-ground (ATG)downlinks,the three-dimensional geometrically based single bounce concentric elliptic ring scattering (GBSBCERS)channel model of ATG multiple input multiple output (MIMO)was set up.Combing with the linear array layout and circular array layout of airborne MIMO,the analytic formula of airborne MIMO channel correlation matrix and ergodic capacity was deduced based on array structures.Then the influ-ence of array structures on the ergodic capacity was analyzed to improve the ATG transmission rate by means of antennas layout.The simulation results shown that the MIMO channel capacity will increase along with the increase of antenna dis-tance in the influence of ATG remote communication,and the circular antenna layout which has more channel capacity than linear antenna layout can adapt to the UAV attitude change.

  4. MEMS in microfluidic channels.

    Energy Technology Data Exchange (ETDEWEB)

    Ashby, Carol Iris Hill; Okandan, Murat; Michalske, Terry A.; Sounart, Thomas L.; Matzke, Carolyn M.

    2004-03-01

    Microelectromechanical systems (MEMS) comprise a new class of devices that include various forms of sensors and actuators. Recent studies have shown that microscale cantilever structures are able to detect a wide range of chemicals, biomolecules or even single bacterial cells. In this approach, cantilever deflection replaces optical fluorescence detection thereby eliminating complex chemical tagging steps that are difficult to achieve with chip-based architectures. A key challenge to utilizing this new detection scheme is the incorporation of functionalized MEMS structures within complex microfluidic channel architectures. The ability to accomplish this integration is currently limited by the processing approaches used to seal lids on pre-etched microfluidic channels. This report describes Sandia's first construction of MEMS instrumented microfluidic chips, which were fabricated by combining our leading capabilities in MEMS processing with our low-temperature photolithographic method for fabricating microfluidic channels. We have explored in-situ cantilevers and other similar passive MEMS devices as a new approach to directly sense fluid transport, and have successfully monitored local flow rates and viscosities within microfluidic channels. Actuated MEMS structures have also been incorporated into microfluidic channels, and the electrical requirements for actuation in liquids have been quantified with an elegant theory. Electrostatic actuation in water has been accomplished, and a novel technique for monitoring local electrical conductivities has been invented.

  5. Organization of the rabbit vitreous body : Lamellae, Cloquet's channel and a novel structure, the 'alae canalis Cloqueti'

    NARCIS (Netherlands)

    Los, LI; van Luyn, MJA; Nieuwenhuis, P

    1999-01-01

    Even though the rabbit is a frequently used animal model for studies on Vitreous function and pathobiology, data on the structural organization of the rabbit Vitreous are scarce. The aim of the present study is to give a detailed description of rabbit vitreous structure in order to provide a basis f

  6. Degenerate RFID Channel Modeling for Positioning Applications

    Directory of Open Access Journals (Sweden)

    A. Povalac

    2012-12-01

    Full Text Available This paper introduces the theory of channel modeling for positioning applications in UHF RFID. It explains basic parameters for channel characterization from both the narrowband and wideband point of view. More details are given about ranging and direction finding. Finally, several positioning scenarios are analyzed with developed channel models. All the described models use a degenerate channel, i.e. combined signal propagation from the transmitter to the tag and from the tag to the receiver.

  7. Exploring accessibility of structural elements of the mammalian 40S ribosomal mRNA entry channel at various steps of translation initiation.

    Science.gov (United States)

    Sharifulin, Dmitri E; Bartuli, Yulia S; Meschaninova, Maria I; Ven'yaminova, Aliya G; Graifer, Dmitri M; Karpova, Galina G

    2016-10-01

    In this work, we studied how the accessibility of structural elements of the mammalian 40S ribosomal mRNA entry channel, ribosomal protein (rp) uS3 and helix (h) 16 of the 18S rRNA, changes upon the translation initiation. In particular, we examined the accessibility of rp uS3 for binding of unstructured RNAs and of riboses in h16 towards attack with benzoyl cyanide (BzCN) in complexes assembled in rabbit reticulocyte lysate utilizing synthetic oligoribonucleotides as well as full-length and truncated up to the initiation AUG codon hepatitis C virus IRES as model mRNAs. With both mRNA types, the rp uS3 peptide recognizing single-stranded RNAs was shown to become shielded only in those 48S preinitiation complexes (PICs) that contained eIF3j bound to 40S subunit in the area between the decoding site and the mRNA entry channel. Chemical probing with BzCN revealed that h16 in the 48S PICs containing eIF3j or scanning factor DHX29 is strongly shielded; the effect was observed with all the mRNAs used, and h16 remained protected as well in 80S post-initiation complexes lacking these factors. Altogether, the obtained results allowed us to suggest that eIF3j bound at the 48S PICs makes the rp uS3 inaccessible for binding of RNAs and this factor subunit is responsible for the decrease of h16 conformational flexibility; the latter is manifested as reduced accessibility of h16 to BzCN. Thus, our findings provide new insights into how eIF3j is implicated in ensuring the proper conformation of the mRNA entry channel, thereby facilitating mRNA loading. PMID:27346718

  8. Synthesis, structural characterization and selectively catalytic properties of metal-organic frameworks with nano-sized channels: A modular design strategy

    International Nuclear Information System (INIS)

    Modular design method for designing and synthesizing microporous metal-organic frameworks (MOFs) with selective catalytical activity was described. MOFs with both nano-sized channels and potential catalytic activities could be obtained through self-assembly of a framework unit and a catalyst unit. By selecting hexaaquo metal complexes and the ligand BTC (BTC=1,3,5-benzenetricarboxylate) as framework-building blocks and using the metal complex [M(phen)2(H2O)2]2+ (phen=1,10-phenanthroline) as a catalyst unit, a series of supramolecular MOFs 1-7 with three-dimensional nano-sized channels, i.e. [M1(H2O)6].[M2(phen)2(H2O)2]2.2(BTC).xH2O (M1, M2=Co(II), Ni(II), Cu(II), Zn(II), or Mn(II), phen=1,10-phenanthroline, BTC=1,3,5-benzenetricarboxylate, x=22-24), were synthesized through self-assembly, and their structures were characterized by IR, elemental analysis, and single-crystal X-ray diffraction. These supramolecular microporous MOFs showed significant size and shape selectivity in the catalyzed oxidation of phenols, which is due to catalytic reactions taking place in the channels of the framework. Design strategy, synthesis, and self-assembly mechanism for the construction of these porous MOFs were discussed. - Grapical abstract: A modular design strategy has been developed to synthesize microporous metal-organic frameworks with potential catalytic activity by self-assembly of the framework-building blocks and the catalyst unit

  9. Quantum channels with a finite memory

    OpenAIRE

    Bowen, Garry; Mancini, Stefano

    2003-01-01

    In this paper we study quantum communication channels with correlated noise effects, i.e., quantum channels with memory. We derive a model for correlated noise channels that includes a channel memory state. We examine the case where the memory is finite, and derive bounds on the classical and quantum capacities. For the entanglement-assisted and unassisted classical capacities it is shown that these bounds are attainable for certain classes of channel. Also, we show that the structure of any ...

  10. EFFICIENT UTILIZATION OF CHANNELS USING DYNAMIC GUARD CHANNEL ALLOCATION WITH CHANNEL BORROWING STRATEGY IN HANDOFFS

    Directory of Open Access Journals (Sweden)

    Alagu S

    2012-05-01

    Full Text Available User mobility in wireless data networks is increasing because of technological advances and the desire for voice and multimedia applications. These applications, however, require fast handoffs between base stations to maintain the quality of the connections. In this paper, the authors describe the use of novel and efficient data structure which dynamically allocates guard channel for handoffs and introduces the concept of channel borrowing strategy. The proposed scheme allocates the guard channels for handoff requests dynamically, based on the traffic load for certain time period. A new originating call in the cell coverage area also uses these guard channels if they are unused. Our basic idea is to allow Guard channels to be shared between new calls and handoff calls. This approach maximizes the channel utilization. The simulation results prove that the channel borrowing scheme improves the overall throughput.

  11. Structures of the PutA peripheral membrane flavoenzyme reveal a dynamic substrate-channeling tunnel and the quinone-binding site.

    Science.gov (United States)

    Singh, Harkewal; Arentson, Benjamin W; Becker, Donald F; Tanner, John J

    2014-03-01

    Proline utilization A (PutA) proteins are bifunctional peripheral membrane flavoenzymes that catalyze the oxidation of L-proline to L-glutamate by the sequential activities of proline dehydrogenase and aldehyde dehydrogenase domains. Located at the inner membrane of Gram-negative bacteria, PutAs play a major role in energy metabolism by coupling the oxidation of proline imported from the environment to the reduction of membrane-associated quinones. Here, we report seven crystal structures of the 1,004-residue PutA from Geobacter sulfurreducens, along with determination of the protein oligomeric state by small-angle X-ray scattering and kinetic characterization of substrate channeling and quinone reduction. The structures reveal an elaborate and dynamic tunnel system featuring a 75-Å-long tunnel that links the two active sites and six smaller tunnels that connect the main tunnel to the bulk medium. The locations of these tunnels and their responses to ligand binding and flavin reduction suggest hypotheses about how proline, water, and quinones enter the tunnel system and where L-glutamate exits. Kinetic measurements show that glutamate production from proline occurs without a lag phase, consistent with substrate channeling and implying that the observed tunnel is functionally relevant. Furthermore, the structure of reduced PutA complexed with menadione bisulfite reveals the elusive quinone-binding site. The benzoquinone binds within 4.0 Å of the flavin si face, consistent with direct electron transfer. The location of the quinone site implies that the concave surface of the PutA dimer approaches the membrane. Altogether, these results provide insight into how PutAs couple proline oxidation to quinone reduction. PMID:24550478

  12. The Importance of Providing Multiple-Channel Sections in Dredging Activities to Improve Fish Habitat Environments

    Directory of Open Access Journals (Sweden)

    Hung-Pin Chiu

    2016-01-01

    Full Text Available After Typhoon Morakot, dredging engineering was conducted while taking the safety of humans and structures into consideration, but partial stream reaches were formed in the multiple-channel sections in Cishan Stream because of anthropogenic and natural influences. This study mainly explores the distribution of each fish species in both the multiple- and single-channel sections in the Cishan Stream. Parts of the environments did not exhibit significant differences according to a one-way ANOVA comparing the multiple- and single-channel sections, but certain areas of the multiple-channel sections had more diverse habitats. Each fish species was widely distributed by non-metric multidimensional scaling in the multiple-channel sections as compared to those in the single-channel sections. In addition, according to the principal component analysis, each fish species has a preferred environment, and all of them have a wide choice of habitat environments in the multiple-channel sections. Finally, the existence of multiple-channel sections could significantly affect the existence of the fish species under consideration in this study. However, no environmental factors were found to have an influence on fish species in the single-channel sections, with the exception of Rhinogobius nantaiensis. The results show that providing multiple-channel sections in dredging activities could improve fish habitat environments.

  13. Conductance of Ion Channels - Theory vs. Experiment

    Science.gov (United States)

    Pohorille, Andrew; Wilson, Michael; Mijajlovic, Milan

    2013-01-01

    . In addition, once the free energy profile becomes available the full current-voltage dependence can be readily obtained. For both channels we carried out calculations using both approaches. We also tested the main assumptions underlying the diffusive model, such as uncorrelated nature of individual crossing events and Fickian diffusion. The accuracy and consistency of different methods will be discussed. Finally we will discuss how comparisons between calculated and measured ionic conductance and selectivity of transport can be used for determining structural models of the channels.

  14. Pressure-driven flow of oligomeric fluid in nano-channel with complex structure. A dissipative particle dynamics study

    Directory of Open Access Journals (Sweden)

    J.M. Ilnytskyi

    2016-02-01

    Full Text Available We develop a simulational methodology allowing for simulation of the pressure-driven flow in the pore with flat and polymer-modified walls. Our approach is based on dissipative particle dynamics and we combine earlier ideas of fluid-like walls and reverse flow. As a test case we consider the oligomer flow through the pore with flat walls and demonstrate good thermostatting qualities of the proposed method. We found the inhomogeneities in both oligomer shape and alignment across the pore leading to a non-parabolic velocity profiles. The method is subsequently applied to a nano-channel decorated with a polymer brush stripes arranged perpendicularly to the flow direction. At certain threshold value of a flow force we find a pillar-to-lamellar morphological transition, which leads to the brush enveloping the pore wall by a relatively smooth layer. At higher flow rates, the flow of oligomer has similar properties as in the case of flat walls, but for the narrower effective pore size. We observe stretching and aligning of the polymer molecules along the flow near the pore walls.

  15. Design and Characterization of Superpotent Bivalent Ligands Targeting Oxytocin Receptor Dimers via a Channel-Like Structure.

    Science.gov (United States)

    Busnelli, Marta; Kleinau, Gunnar; Muttenthaler, Markus; Stoev, Stoytcho; Manning, Maurice; Bibic, Lucka; Howell, Lesley A; McCormick, Peter J; Di Lascio, Simona; Braida, Daniela; Sala, Mariaelvina; Rovati, G Enrico; Bellini, Tommaso; Chini, Bice

    2016-08-11

    Dimeric/oligomeric states of G-protein coupled receptors have been difficult to target. We report here bivalent ligands consisting of two identical oxytocin-mimetics that induce a three order magnitude boost in G-protein signaling of oxytocin receptors (OTRs) in vitro and a 100- and 40-fold gain in potency in vivo in the social behavior of mice and zebrafish. Through receptor mutagenesis and interference experiments with synthetic peptides mimicking transmembrane helices (TMH), we show that such superpotent behavior follows from the binding of the bivalent ligands to dimeric receptors based on a TMH1-TMH2 interface. Moreover, in this arrangement, only the analogues with a well-defined spacer length (∼25 Å) precisely fit inside a channel-like passage between the two protomers of the dimer. The newly discovered oxytocin bivalent ligands represent a powerful tool for targeting dimeric OTR in neurodevelopmental and psychiatric disorders and, in general, provide a framework to untangle specific arrangements of G-protein coupled receptor dimers. PMID:27420737

  16. Substrate effect on nanoporous structure of silica wires by channel-confined self-assembly of block-copolymer and sol-gel precursors

    Directory of Open Access Journals (Sweden)

    Michael Z. Hu

    2015-09-01

    Full Text Available Nanoporous silica wires of various wire diameters were developed by space-confined molecular self-assembly of triblock copolymer ethylene/propylene/ethylene (P123 and silica alkoxide precursor (tetraethylorthosilicate, TEOS. Two distinctive hard-templating substrates, anodized aluminum oxide (AAO and track-etched polycarbonate (EPC, with channel diameters in the range between 10 nm and 200 nm were employed for space-confinement of soft molecular self-assembly driven by the block-copolymer microphase separation. It was observed in the scanning and transmission electron microscope (STEM studies that the substrate geometry and material characteristics had pronounced effects on the structure and morphology of the silica nanowires. A “substrate wall effect” was proposed to explain the ordering and orientation of the intra-wire mesostructure. Circular and spiral nanostructures were found only in wires formed in AAO substrate, not in EPC. Pore-size differences and distinctive wall morphologies of the nanowires relating to the substrates were discussed. It was shown that the material and channel wall characteristics of different substrates play key roles in the ordering and morphology of the intra-wire nanostructures.

  17. Quantum channels with a finite memory

    CERN Document Server

    Bowen, G; Bowen, Garry; Mancini, Stefano

    2004-01-01

    In this paper we study quantum communication channels with correlated noise effects, i.e., quantum channels with memory. We derive a model for correlated noise channels that includes a channel memory state. We examine the case where the memory is finite, and derive bounds on the classical and quantum capacities. For the entanglement-assisted and unassisted classical capacities it is shown that these bounds are attainable for certain classes of channel. Also, we show that the structure of any finite memory state is unimportant in the asymptotic limit, and specifically, for a perfect finite-memory channel where no information is lost to the environment, the channel is asymptotically noiseless.

  18. Effects of waterlogging on the soil structure of some Italian soils in relation to the GAEC cross-compliance standard Maintenance of farm channel networks and field convexity

    Directory of Open Access Journals (Sweden)

    Paolo Bazzoffi

    2011-08-01

    Full Text Available The aim of this work is to assess the effectiveness of the cross-compliance standard Maintenance of farm channel networks and field convexity with respect to the environmental objective to maintain soil structure through appropriate measures indicated in Annex IV of REG. EC 1782/03. This GAEC standard concerns arable land and obliges the farmer to maintain the farm channel network and the convex shape of fields with a view to the management and preservation of temporary drainage ditches and permanent channels along the edges of the fields, in order to ensure their efficacy and function in draining away water. Experiments have confirmed that maintaining the farm channel networks and giving fields a convex shape has a positive effect in predisposing the soil to ideal conditions for the preservation of its structure. In particular, we have used the data of a newly conducted laboratory study on the effects of the duration of waterlogging on the stability of soil structure, as well as the results of several studies carried out in the past with the following goals: i assessment of the effects of soil moisture various levels on the stability of the structure; ii assessment of the effects of several wetting and drying cycles on aggregate stability; iii determination of aggregate stability under the influence of freezing and thawing under different soil moisture conditions; iv determination of aggregate stability with an increasing number of freeze/thaw cycles (0, 1, 3, 5, 11 cycles at field capacity moisture. The tests during which the soil was subjected to freezing and thawing were carried out taking into account the fact that during winter waterlogged soil may freeze, leading to a structure breakdown, due to the expansion of water into the pores during the freezing phase. In general, the results showed that in soils that are sandy and rich in rock fragments, rapid moisture penetration leads to significant disaggregation phenomena compared with soils

  19. FMCG companies specific distribution channels

    OpenAIRE

    Ioana Barin

    2009-01-01

    Distribution includes all activities undertaken by the producer, alone or in cooperation, since the end of the final finished products or services until they are in possession of consumers. The distribution consists of the following major components: distribution channels or marketing channels, which together form a distribution network; logistics o rphysical distribution. In order to effective achieve, distribution of goods requires an amount of activities and operational processes related t...

  20. Formation of texture and structure in rods of copper and titanium under equal-channel angular pressing

    NARCIS (Netherlands)

    Perlovich, Y; Isaenkova, M; Fesenko, [No Value; Grekhov, M; Alexandrov, [No Value; Beyerlein, IJ; Horita, Z

    2006-01-01

    New data on structure and texture features of Cu and Ti rods, subjected to ECAP at 20 degrees C and 400 degrees C respectively, were obtained by means of advanced X-ray diffractometric methods. A deformation inhomogeneity through rod's cross-section was studied by reduced cubic samples 3x3x3 mm, cut

  1. Studying the molecular determinants of potassium channel structure and function in membranes by solid-state NMR

    NARCIS (Netherlands)

    van der Cruijsen, Elwin

    2014-01-01

    Solid-state Nuclear Magnetic Resonance (ssNMR) has made remarkable progress in the structural characterization of membrane proteins systems at atomic resolution. Such studies can be further aided by the use of molecular dynamic simulations. Moreover, ssNMR data can be directly compared to functional

  2. Focused-ion-beam nano-structured rib channel waveguides in $KY(WO_4)_2$ for laser applications

    NARCIS (Netherlands)

    Gardillou, F.; Romanyuk, Y.E.; Pavius, M.; Borca, C.N.; Salathé, R.P.; Pollnau, M.

    2006-01-01

    Bulk $KY(WO_4)_2$ (hereafter KYW) laser crystals doped with rare-earth ions are recognized to be among the most promising host materials for obtaining novel solid-state lasers. The rare-earth ions $RE^{3+}$ are easily incorporated in the KYW structure by replacing the $Y{3+}$ ions, resulting in a st

  3. Power transmission in combined compressors comprising a radial and side channel stage. Final report and appendices; Untersuchungen ueber die Energieuebertragung in kombinierten Verdichtern aus Radial- und Seitenkanalstufe. Abschlussbericht und Anlagen

    Energy Technology Data Exchange (ETDEWEB)

    Surek, D.

    2001-07-30

    In the field of turbo-compressors, the following problems must be solved in order to extend the range of operation: (a) Prevention of rotating stall at part load; (b) Extension of the permissible operating range at part load; (c) Extension of the operation range of radial and side channel compressors in higher vacuum below p{sub s}=50kPa. (c) can be achieved by changing the flow pattern in the rotor and in the region of interaction between the blade wheel and guide wheel of radial compressors or by actively influencing transient flow, e.g. by coupling radial compressor stages with a side channel compressor stage as final stage. The contribution goes into detail about the latter solution. [German] Fuer den Turboverdichterbau sind gegenwaertig folgende Probleme zur Erweiterung der Betriebsbereiche dringend zu loesen: (a) Vermeiden oder beseitigen von Rotating Stall im Teillastbereich,(b) Erweiterung des zulaessigen Arbeitsbereiches im Teillastgebiet, (c) Erschliessung des Arbeitsbereichs von Radial- und Seitenkanalverdichtern im hoeheren Vakuumbereich unterhalb von p{sub s}=50 kPa. Die Erweiterung des zulaessigen Arbeitsbereichs im Teillastgebiet kann durch Veraenderung der Stroemungsstruktur im Laufrad und im Interaktionsbereich zwischen Lauf- und Leitrad von Radialverdichtern oder durch die aktive Beeinflussung der instationaeren Stroemung z.B. durch Kopplung von Radialverdichterstufen mit einer Seitenkanalverdichterstufe als Endstufe erfolgen. Seitenkanalverdichter verfuegen ueber stabile Kennlinien im gesamten Betriebsbereich. Im Kombinationsbetrieb einer Radialverdichterstufe mit nach- oder vorgeschalteter Seitenkanalverdichterstufe praegte die Seitenkanalverdichterstufe dem Kombinationsverdichter ihr stabiles Kennlinienverhalten auf, so dass sich eine stabile Gesamtkennlinie ergibt. Eine Pumpgrenze tritt nicht mehr auf, so dass der Betrieb von Verdichterkombinationen aus Radial- und Seitenkanalstufe im gesamten Kennlinienbereich moeglich ist. Die

  4. Effect of equal channel angular pressing on structure and superplasticity of non-heat hardenable Al-Mg-Sc-Zr alloy

    Science.gov (United States)

    Mukhametdinova, Oksana; Avtokratova, Elena; Sitdikov, Oleg; Markushev, Michael

    2015-10-01

    Microstructure and superplastic behavior of the aluminum alloy 1570C (Al-5Mg-0.2Sc-0.08Zr) after equal channel angular pressing (ECAP) to the strains of e ˜ 3 and 8 at the temperature of 325°C have been analyzed. ECAP to e ˜ 3 resulted in the partially recrystallized structure with the volume fraction and size of new grains of about 30% and 1-2 µm, consequently. The alloy with such structure exhibited the high-strain rate superplasticity with elongations >2000% at strain rates ˜10-2 s-1 and temperatures 475-520°C. After ECAP to e ˜ 8, the structure became more uniform with ˜70% of grains of ˜1 μm in size. This promoted both low-temperature and high-strain rate superplasticity with maximum elongations ˜1000 and 3300% at 350°C and 1.4×10-2 s-1 and at 475°C and 5.6×10-2 s-1, respectively. The nature of the alloy superplastic behavior is discussed.

  5. Design, synthesis and evaluation of novel HIV-1 NNRTIs with dual structural conformations targeting the entrance channel of the NNRTI binding pocket.

    Science.gov (United States)

    Meng, Qing; Chen, Xuwang; Kang, Dongwei; Huang, Boshi; Li, Wenxin; Zhan, Peng; Daelemans, Dirk; De Clercq, Erik; Pannecouque, Christophe; Liu, Xinyong

    2016-06-10

    On the basis of structure-based bioisosteric replacement and molecular hybridization strategy, a series of novel dual structural-conformation inhibitors targeting the "entrance channel" of HIV-1 NNRTIs binding pocket (NNIBP) were designed and synthesized. All of the new compounds were evaluated for their anti-HIV activities in MT-4 cells using the MTT method. Five compounds exhibited moderate to excellent potencies inhibiting wild-type (wt) HIV-1 replication with EC50 values ranging from 31.36 μM to 0.11 μM. Among them, compound 15b was identified as the most potent inhibitor with EC50 values of 0.11 μM and 2.18 μM against wt and K103N/Y181C double mutant HIV-1 strain (RES056), respectively. In addition, preliminary structure-activity relationships (SARs) and molecular simulation studies were discussed, which may provide valuable insights for further optimization. PMID:26994843

  6. Elastic and muscular arteries differ in structure, basal NO production and voltage-gated Ca2+-channels

    Directory of Open Access Journals (Sweden)

    Arthur J.A. Leloup

    2015-12-01

    Full Text Available In the last decades, the search for mechanisms underlying progressive arterial stiffening and for interventions to avoid or reverse this process has gained much attention. In general, arterial stiffening displays regional variation and is, for example, during aging more prominent in elastic than in muscular arteries. We hypothesize that besides passive also active regulators of arterial compliance (i.e. endothelial and vascular smooth muscle cell (VSMC function differ between these arteries. Hence, it is conceivable that these vessel types will display different time frames of stiffening. To investigate this hypothesis segments of muscular arteries such as femoral and mesenteric arteries and elastic arteries such as the aorta and carotid artery were isolated from female C57Bl6 mice (5-6 months of age, n=8. Both microscopy and passive stretching of the segments in a myograph confirmed that passive mechanical properties (elastin, collagen of elastic and muscular arteries were significantly different. Endothelial function, more specifically basal nitric oxide (NO efficacy, and VSMC function, more specifically L-type voltage-gated Ca2+ channel (VGCC-mediated contractions, were determined by α1-adrenoceptor stimulation with phenylephrine (PE and by gradual depolarization with elevated extracellular K+ in the absence and presence of eNOS inhibition with L-NAME. PE-mediated isometric contractions significantly increased after inhibition of NO release with L-NAME in elastic, but not in muscular vessel segments. This high basal eNOS activity in elastic vessels was also responsible for shifts of K+ concentration-contraction curves to higher external K+. VGCC-mediated contractions were similarly affected by depolarization with elevated K+ in muscular artery segments or in elastic artery segments in the absence of basal NO. However, K+-induced contractions were inhibited by the VGCC blocker diltiazem with significantly higher sensitivity in the muscular

  7. A new scorpion venom toxin paralytic to insects that affects Na+ channel activation. Purification, structure, antigenicity and mode of action.

    OpenAIRE

    Borchani, L.; Mansuelle, P.; Stankiewicz, M; Grolleau, F.; Cestèle, S.; Karoui, H.; Lapied, B; Rochat, H; Pelhate, M.; El Ayeb, M.

    1996-01-01

    International audience A new toxin, BotIT2, with a unique mode of action on the isolated giant axon of the cockroach Periplaneta americana and DUM (dorsal unpaired median) neurons, has been purified from the venom of the scorpion Buthus occitanus tunetanus. Its structural, antigenic and pharmacological properties are compared to those of three other groups of neurotoxins found in Buthidae scorpion venoms. Like excitatory, depressant and alpha-type insect-selective neurotoxins, BotIT2 is to...

  8. Optimal processing of reversible quantum channels

    Energy Technology Data Exchange (ETDEWEB)

    Bisio, Alessandro, E-mail: alessandro.bisio@unipv.it [QUIT Group, Dipartimento di Fisica, INFN Sezione di Pavia, via Bassi 6, 27100 Pavia (Italy); D' Ariano, Giacomo Mauro; Perinotti, Paolo [QUIT Group, Dipartimento di Fisica, INFN Sezione di Pavia, via Bassi 6, 27100 Pavia (Italy); Sedlák, Michal [Department of Optics, Palacký University, 17. Listopadu 1192/12, CZ-771 46 Olomouc (Czech Republic); Institute of Physics, Slovak Academy of Sciences, Dúbravská Cesta 9, 845 11 Bratislava (Slovakia)

    2014-05-01

    We consider the general problem of the optimal transformation of N uses of (possibly different) unitary channels to a single use of another unitary channel in any finite dimension. We show how the optimal transformation can be fully parallelized, consisting in a preprocessing channel followed by a parallel action of all the N unitaries and a final postprocessing channel. Our techniques allow to achieve an exponential reduction in the number of the free parameters of the optimization problem making it amenable to an efficient numerical treatment. Finally, we apply our general results to find the analytical solution for special cases of interest like the cloning of qubit phase gates.

  9. Dequantization Via Quantum Channels

    Science.gov (United States)

    Andersson, Andreas

    2016-08-01

    For a unital completely positive map {Φ} ("quantum channel") governing the time propagation of a quantum system, the Stinespring representation gives an enlarged system evolving unitarily. We argue that the Stinespring representations of each power {Φ^m} of the single map together encode the structure of the original quantum channel and provide an interaction-dependent model for the bath. The same bath model gives a "classical limit" at infinite time {mto∞} in the form of a noncommutative "manifold" determined by the channel. In this way, a simplified analysis of the system can be performed by making the large-m approximation. These constructions are based on a noncommutative generalization of Berezin quantization. The latter is shown to involve very fundamental aspects of quantum-information theory, which are thereby put in a completely new light.

  10. Structural Health and Prognostics Management for Offshore Wind Plants; Final Report of Sandia R&D Activities.

    Energy Technology Data Exchange (ETDEWEB)

    Griffith, Daniel Todd [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Wind Energy Technologies Dept.

    2015-04-01

    This final report is a compilation of resear ch efforts - funded by the US Department of Energy Wind and Water Power Technolog ies Office over a four-year period from FY11 through FY14. The goals of this re search program were to develop and evaluate technical innovati ons with promise for maxi mizing revenues and reducing levelized cost of energy (LCOE) for offs hore wind plants - more specifically the goals of the Structural H ealth and Prognostics Management (SHPM) program were to reduce O&M costs and increase energy capture through use of SHPM-based technologies. A technology roadmap was deve loped at the start of the project to guide the research efforts. This roadmap identified and outlined six major research thrust areas each having five stages of ma turity. Research was conducted in each of these thrust areas, as documented throughout this report, although a major focus was on development of damage detection strategi es for the most frequent blade damage conditions and damage mitigation and life-exte nsion strategies via changes in turbine operations (smart loads management). Th e work summarized in this compilation report is the product of the work of many researchers. A summary of the major findings, status of the SHPM Technology Ro admap and recommendations for future work are also provided.

  11. The 6dF Galaxy Survey: Final Redshift Release (DR3) and Southern Large-Scale Structures

    CERN Document Server

    Jones, D Heath; Saunders, Will; Colless, Matthew; Jarrett, Tom; Parker, Quentin; Fairall, Anthony; Mauch, Thomas; Sadler, Elaine; Watson, Fred; Burton, Donna; Campbell, Lachlan; Cass, Paul; Croom, Scott; Dawe, John; Fiegert, Kristin; Frankcombe, Leela; Hartley, Malcolm; Huchra, John; James, Dionne; Kirby, Emma; Lahav, Ofer; Lucey, John; Mamon, Gary; Moore, Lesa; Peterson, Bruce; Prior, Sayuri; Proust, Dominique; Russell, Ken; Safouris, Vicky; Wakamatsu, Ken-ichi; Westra, Eduard; Williams, Mary

    2009-01-01

    We report the final redshift release of the 6dF Galaxy Survey, a combined redshift and peculiar velocity survey over the southern sky (|b|>10 deg). Its 136,304 spectra have yielded 110,256 new extragalactic redshifts and a new catalogue of 125,071 galaxies making near-complete samples with (K, H, J, r_F, b_J) <= (12.65, 12.95, 13.75, 15.60, 16.75). The median redshift of the survey is 0.053. Survey data, including images, spectra, photometry and redshifts, are available through an online database. We describe changes to the information in the database since earlier interim data releases. Future releases will include velocity dispersions, distances and peculiar velocities for the brightest early-type galaxies, comprising about 10% of the sample. Here we provide redshift maps of the southern local universe with z<=0.1, showing nearby large-scale structures in hitherto unseen detail. A number of regions known previously to have a paucity of galaxies are confirmed as significantly underdense regions. The UR...

  12. Constraining the Strength and CP Structure of Dark Production at the LHC: the Associated Top-Pair Channel

    CERN Document Server

    Buckley, Matthew R

    2015-01-01

    We consider the production of dark matter in association with a pair of top quarks, mediated by a scalar or pseudoscalar particle in a generic Simplified Model. We demonstrate that the difference of azimuthal angle between the two leptons $\\Delta \\phi_{ll}$, in the dileptonic top decay mode, can directly probe the CP-properties of the mediator. We estimate the constraints to strength and CP-structure of dark matter production for these well-motivated Simplified Models from the LHC Run II.

  13. Constraining the strength and C P structure of dark production at the LHC: The associated top-pair channel

    Science.gov (United States)

    Buckley, Matthew R.; Gonçalves, Dorival

    2016-02-01

    We consider the production of dark matter in association with a pair of top quarks, mediated by a scalar or pseudoscalar particle in a generic Simplified Model. We demonstrate that the difference of azimuthal angle between the two leptons Δ ϕℓℓ, in the dileptonic top decay mode, can directly probe the C P -properties of the mediator. We estimate the constraints to strength and C P -structure of dark matter production for these well-motivated Simplified Models from the LHC Run II.

  14. Processing of single channel air and water gun data for imaging an impact structure at the Chesapeake Bay

    Science.gov (United States)

    Lee, Myung W.

    1999-01-01

    Processing of 20 seismic profiles acquired in the Chesapeake Bay area aided in analysis of the details of an impact structure and allowed more accurate mapping of the depression caused by a bolide impact. Particular emphasis was placed on enhancement of seismic reflections from the basement. Application of wavelet deconvolution after a second zero-crossing predictive deconvolution improved the resolution of shallow reflections, and application of a match filter enhanced the basement reflections. The use of deconvolution and match filtering with a two-dimensional signal enhancement technique (F-X filtering) significantly improved the interpretability of seismic sections.

  15. Population structure and maturity stages of Fritillaria borealis (Appendicularia, Tunicata): seasonal cycle in Ushuaia Bay (Beagle Channel)

    OpenAIRE

    María Laura Presta; Mónica Susana Hoffmeyer; Fabiana Lia Capitanio

    2015-01-01

    AbstractFritillaria borealis is a cosmopolitan species, very frequent in sub-antarctic and antarctic waters. The objective of this paper was to analyze its size structure and maturity stages at two sites in Ushuaia Bay: a coastal site exposed to anthropogenic pressure (E1) and a reference site (E2) located in the external zone of the bay. Zooplankton was collected during the 2012 seasonal cycle. The sampling method involved the use of a 67 µm-mesh net. Appendicularians were classified in four...

  16. CaSeO4-0.625H2O - Water Channel Occupation in a bassanite Related Structure

    Energy Technology Data Exchange (ETDEWEB)

    S Fritz; H Schmidt; I Paschke; O Magdysyuk; R Dinnebier; D Freyer; W Voigt

    2011-12-31

    Calcium selenate subhydrate, CaSeO{sub 4} {center_dot} 0.625H{sub 2}O, was prepared by hydrothermal conversion of CaSeO{sub 4} {center_dot} 2H{sub 2}O at 463 K. From the single crystals obtained in the shape of hexagonal needles, 50-300 {micro}m in length, the crystal structure could be solved in a trigonal unit cell with space group P3{sub 2}21. The cell was confirmed and refined by high-resolution synchrotron powder diffraction. The subhydrate was characterized by thermal analysis and Raman spectroscopy.

  17. Architecture and Channel-Belt Clustering in the Fluvial lower Wasatch Formation, Uinta Basin, Utah

    Science.gov (United States)

    Pisel, J. R.; Pyles, D. R.; Bracken, B.; Rosenbaum, C. D.

    2013-12-01

    The Eocene lower Wasatch Formation of the Uinta Basin contains exceptional outcrops of low net-sand content (27% sand) fluvial strata. This study quantitatively documents the stratigraphy of a 7 km wide by 300 meter thick strike-oriented outcrop in order to develop a quantitative data base that can be used to improve our knowledge of how some fluvial systems evolve over geologic time scales. Data used to document the outcrop are: (1) 550 meters of decimeter to half meter scale resolution stratigraphic columns that document grain size and physical sedimentary structures; (2) detailed photopanels used to document architectural style and lithofacies types in the outcrop; (3) thickness, width, and spatial position for all channel belts in the outcrop, and (4) directional measurements of paleocurrent indicators. Two channel-belt styles are recognized: lateral and downstream accreting channel belts; both of which occur as either single or multi-story. Floodplain strata are well exposed and consist of overbank fines and sand-rich crevasse splay deposits. Key upward and lateral characteristics of the outcrop documented herein are the following. First, the shapes of 243 channels are documented. The average width, thickness and aspect ratios of the channel belts are 110 m, 7 m, and 16:1, respectively. Importantly, the size and shape of channel belts does not change upward through the 300 meter transect. Second, channels are documented to spatially cluster. 9 clusters are documented using a spatial statistic. Key upward patterns in channel belt clustering are a marked change from non-amalgamated isolated channel-belt clusters to amalgamated channel-belt clusters. Critically, stratal surfaces can be correlated from mudstone units within the clusters to time-equivalent floodplain strata adjacent to the cluster demonstrating that clusters are not confined within fluvial valleys. Finally, proportions of floodplain and channel belt elements underlying clusters and channel belts

  18. Mitochondrial Ion Channels

    Science.gov (United States)

    O’Rourke, Brian

    2009-01-01

    In work spanning more than a century, mitochondria have been recognized for their multifunctional roles in metabolism, energy transduction, ion transport, inheritance, signaling, and cell death. Foremost among these tasks is the continuous production of ATP through oxidative phosphorylation, which requires a large electrochemical driving force for protons across the mitochondrial inner membrane. This process requires a membrane with relatively low permeability to ions to minimize energy dissipation. However, a wealth of evidence now indicates that both selective and nonselective ion channels are present in the mitochondrial inner membrane, along with several known channels on the outer membrane. Some of these channels are active under physiological conditions, and others may be activated under pathophysiological conditions to act as the major determinants of cell life and death. This review summarizes research on mitochondrial ion channels and efforts to identify their molecular correlates. Except in a few cases, our understanding of the structure of mitochondrial ion channels is limited, indicating the need for focused discovery in this area. PMID:17059356

  19. Population structure and maturity stages of Fritillaria borealis (Appendicularia, Tunicata: seasonal cycle in Ushuaia Bay (Beagle Channel

    Directory of Open Access Journals (Sweden)

    María Laura Presta

    2015-09-01

    Full Text Available AbstractFritillaria borealis is a cosmopolitan species, very frequent in sub-antarctic and antarctic waters. The objective of this paper was to analyze its size structure and maturity stages at two sites in Ushuaia Bay: a coastal site exposed to anthropogenic pressure (E1 and a reference site (E2 located in the external zone of the bay. Zooplankton was collected during the 2012 seasonal cycle. The sampling method involved the use of a 67 µm-mesh net. Appendicularians were classified in four maturity stages: I undifferentiated gonads, II testis and ovary differentiated, III expanded testis, IV discharged testis, expanded ovary. Our results showed that the highest densities of F. borealisoccurred in spring and summer at both sites; coinciding with high values of chlorophyll-a. The percentage of juveniles (I and II exhibited a spatial and temporal pattern similar to that observed for chlorophyll-a values. During spring-summer, juveniles and mature specimens (III and IV showed a greater gonadal development than those individuals found in autumn-winter. In conclusion, the mismatching in the population structure and the pattern of densities of F. borealis between coastal and external zones would suggest the existence of two sub-populations susceptible to the influence of the anthropogenic impact in the bay.

  20. Box model for channels of human migration

    CERN Document Server

    Vitanov, Nikolay K

    2016-01-01

    We discuss a mathematical model of migration channel based on the truncated Waring distribution. The truncated Waring distribution is obtained for a more general model of motion of substance through a channel containing finite number of boxes. The model is applied then for case of migrants moving through a channel consisting of finite number of countries or cities. The number of migrants in the channel strongly depends on the number of migrants that enter the channel through the country of entrance. It is shown that if the final destination country is very popular then large percentage of migrants may concentrate there.

  1. CHANNEL WIDENING DURING DEGRADATION OF ALLUVIAL RIVERS

    Institute of Scientific and Technical Information of China (English)

    Guangqian WANG; Junqiang XIA

    2001-01-01

    This paper first describes the phenomenon of channel widening during degradation of alluvial rivers,explains the mechanisms of channel widening, and analyzes the stability of cohesive riverbank. Then a one-dimensional mathematical model is developed to simulate the transport of non-uniform suspended sediments, with a sub-model for the simulation of channel widening, and is used to study the process of channel widening during degradation. The effects of different incident flow and sediment conditions and different riverbank material characteristics on channel widening and bed degradation are compared.Finally, main factors that control the deformation processes are identified.

  2. Muon cooling channels

    International Nuclear Information System (INIS)

    Parameters of muon cooling channels are discussed that achieve cooling of a muon beam from initial to final emittances in all three degrees of freedom in a given length. Published theories of ionisation cooling yield equilibrium emittances from multiple scattering and energy straggling, and partition numbers. Limits are obtained on the amplitude functions in all three degrees of freedom. Parameters of wedge-shaped absorbers and partition numbers are derived for simultaneous longitudinal and transverse cooling. Limits on length and material of absorbers, and dispersion at the wedge-shaped absorbers are obtained. Parameters are presented for the RF system, e.g. peak voltage, frequency, and stable phase angle. The properties of the magnetic lattice which satisfies the conditions imposed by the longitudinal dynamics are studied. The consequences of changes in the assumed performance of the cooling channel on its parameters are discussed

  3. Experimental evidence of planar channeling in a periodically bent crystal

    CERN Document Server

    Bagli, E; Bellucci, V; Berra, E; Camattari, R; De Salvador, D; Germogli, G; Guidi, V; Lanzoni, L; Lietti, D; Mazzolari, A; Prest, M; Tikhomirov, V V; Vallazza, E

    2014-01-01

    The usage of a Crystalline Undulator (CU) has been identified as a promising solution for generating powerful and monochromatic $\\gamma$-rays. A CU was fabricated at SSL through the grooving method, i.e., by the manufacturing of a series of periodical grooves on the major surfaces of a crystal. The CU was extensively characterized both morphologically via optical interferometry at SSL and structurally via X-ray diffraction at ESRF. Then, it was finally tested for channeling with a 400 GeV/c proton beam at CERN. The experimental results were compared to Monte Carlo simulations. Evidence of planar channeling in the CU was firmly observed. Finally, the emission spectrum of the positron beam interacting with the CU was simulated for possible usage in currently existing facilities.

  4. Dynamics of premixed hydrogen/air flames in mesoscale channels

    Energy Technology Data Exchange (ETDEWEB)

    Pizza, Gianmarco [Paul Scherrer Institute, Combustion Research, CH-5232, Villigen PSI (Switzerland); Aerothermochemistry and Combustion Systems Laboratory, Swiss Federal Institute of Technology, CH-8092, Zurich (Switzerland); Frouzakis, Christos E.; Boulouchos, Konstantinos [Aerothermochemistry and Combustion Systems Laboratory, Swiss Federal Institute of Technology, CH-8092, Zurich (Switzerland); Mantzaras, John [Paul Scherrer Institute, Combustion Research, CH-5232, Villigen PSI (Switzerland); Tomboulides, Ananias G. [Department of Engineering and Management of Energy Resources, University of Western Macedonia, 50100 Kozani (Greece)

    2008-10-15

    Direct numerical simulation with detailed chemistry and transport is used to study the stabilization and dynamics of lean ({phi}=0.5) premixed hydrogen/air atmospheric pressure flames in mesoscale planar channels. Channel heights of h=2, 4, and 7 mm, and inflow velocities in the range 0.3{<=}U{sub IN}{<=}1100cm/ s are investigated. Six different burning modes are identified: mild combustion, ignition/extinction, closed steady symmetric flames, open steady symmetric flames, oscillating and, finally, asymmetric flames. Chaotic behavior of cellular flame structures is observed for certain values of U{sub IN}. Stability maps delineating the regions of the different flame types are finally constructed. (author)

  5. Electro-plasmonic 2 × 2 channel-routing switch arranged on a thin-Si-doped metal/insulator/semiconductor/metal structure.

    Science.gov (United States)

    Moazzam, Mostafa Keshavarz; Kaatuzian, Hassan

    2016-01-20

    Plasmonics as a new field of chip-scale technology is the interesting substrate of this study to propose and numerically investigate a metal/insulator/semiconductor/metal (MISM)-structure 2×2 plasmonic routing switch. As a planar subwavelength arrangement, the presented design has two npn-doped side-coupled dual waveguides whose duty is to route the propagating surface plasmon polaritons through the device. Relying on the MISM structure, which has a MOS-like thin-film arrangement of typically 45 nm doped silicon covered by a layer of 8 nm thick HfO(2) gate insulator, the routing configuration is electrically addressed based on the carrier-induced plasma dispersion effects as an external electro-plasmonic switching control. Finite-element-method-conducted electromagnetic simulations are employed to evaluate the switch optical response at telecom wavelength of λ=1550  nm, due to which the balanced operation measure of extinction ratios larger than 10 dB and insertion losses of around -1.8  dB are obtained for both channels of CROSS and STRAIGHT. Compared with other photonic and plasmonic switching counterparts, this configuration, besides its potential for CMOS compatibility, can be utilized as a high-speed compact building block to sustain higher-speed, more miniaturized, and less consuming electro-optic routing/switching protocols toward complicated optical integrated circuits and systems. PMID:26835932

  6. Band structure and decay channels of thorium-229 low-lying isomeric state for ensemble of thorium atoms adsorbed on calcium fluoride

    International Nuclear Information System (INIS)

    The results are presented on the study of the electronic structure of thorium atoms adsorbed by the liquid atomic layer deposition from aqueous solution of thorium nitrate on the surface of CaF2. The chemical state of the atoms and the change of the band structure in the surface layers of Th/CaF2 system on CaF2 substrate were investigated by XPS and REELS techniques. It was found that REELS spectra for Th/CaF2 system include peaks in the region of low energy losses (3-7 eV) which are missing in the similar spectra for pure CaF2. It is concluded that the presence of the observed features in the REELS spectra is associated with the chemical state of thorium atoms and is caused by the presence of uncompensated chemical bonds at the Th/CaF2 interface, and, therefore, by the presence of unbound 6d- and 7s-electrons of thorium atoms. Assuming the equivalence of the electronic configuration of thorium-229 and thorium-232 atoms, an estimate was made on the time decay of the excited state of thorium-229 nuclei through the channel of the electron conversion. It was found that the relaxation time is about 40 μs for 6d-electrons, and about 1 μs for 7s-electrons. (copyright 2015 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim)

  7. Distinct transport selectivity of two structural subclasses of the nodulin-like intrinsic protein family of plant aquaglyceroporin channels.

    Science.gov (United States)

    Wallace, Ian S; Roberts, Daniel M

    2005-12-27

    Major intrinsic proteins (MIPs) are a diverse class of integral membrane proteins that facilitate the transport of water and some small solutes across cellular membranes. X-ray structures of MIPs indicate that a tetrad of residues (the ar/R region) form a narrow pore constriction that constitutes the selectivity filter. In comparison with mammalian and microbial species, plants have a greater number and diversity of MIPs with greater than 30 genes encoding four phylogenetic subfamilies with eight different classes of ar/R sequences. The nodulin 26-like intrinsic protein (NIP) subfamily in Arabidopsis can be subdivided into two ar/R subgroups: the NIP subgroup I, which resembles the archetype of the family, soybean nodulin 26, and the NIP subgroup II, which is represented by the Arabidopsis protein AtNIP6;1. These two NIPs differ principally by the substitution of a conserved alanine (NIP subgroup II) for a conserved tryptophan (NIP subgroup I) in the helix 2 position (H2) of the ar/R filter. A comparison of the water and solute tranport properties of the two proteins was performed by expression in Xenopus laevis oocytes. Nodulin 26 is an aquaglyceroporin with a modest osmotic water permeability (P(f)) and the ability to transport uncharged solutes such as glycerol and formamide. In constrast, AtNIP6;1 showed no measurable water permeability but transported glycerol, formamide, as well as larger solutes that were impermeable to nodulin 26. By site-directed mutagenesis, we show that the H2 position is the crucial determinant that confers these transport behaviors. A comparison of the NIPs and tonoplast-intrinsic proteins (TIP) shows that the H2 residue can predict the transport profile for water and glycerol with histidine found in TIP-like aquaporins, tryptophan found in aquaglyceroporins (NIP I), and alanine found in water-impermeable glyceroporins (AtNIP6;1). PMID:16363796

  8. Spectral representation for u- and t-channel exchange processes in a partial-wave decomposition

    CERN Document Server

    Lutz, M F M; Korpa, C L

    2015-01-01

    We study the analytic structure of partial-wave amplitudes derived from u- and t-channel exchange processes. The latter plays a crucial role in dispersion-theory approaches to coupled-channel systems that model final state interactions in QCD. A general spectral representation is established that is valid in the presence of anomalous thresholds, decaying particles or overlapping left-hand and right-hand cut structures as it occurs frequently in hadron physics. The results are exemplified at hand of ten specific processes.

  9. Theoretical and computational studies of microscopic water channels

    Science.gov (United States)

    Zhu, Fangqiang

    Water channels are ubiquitous in all life forms. A notable example is aquaporins (AQPs), a family of proteins which mainly function as passive water channels in cell membranes. The availability of the crystal structures of several AQPs in recent years allowed us to study them in atomic details. We performed molecular dynamics (MD) simulations on AQPs in lipid bilayers to study water permeation through these channels. We also simulated water conduction in carbon nanotubes, serving as simplified models for biological channels. We developed theories and methodologies aimed to reproduce and predict important experimental quantities of water channels from simulations. We showed that the diffusion permeability (pd), which is measured by tracer diffusion in experiments, can be calculated from equilibrium MD simulations. In order to calculate the osmotic permeability (p f), which is experimentally measured in the presence of a solute concentration difference, we developed a method to induce a hydrostatic pressure difference across the membrane under periodic boundary conditions. We calculated the osmotic permeability for aquaporin-1 using this method, which agrees with experiments. Using a continuous-time random-walk model, we showed that for single-file water channels, the ratio of p f to pd is roughly equal to the number of water molecules in the channel. Proton transfer through single water file was studied theoretically using network thermodynamics. Finally, we proposed a new model for general water channels, which gives a quantitative relationship between water permeations under equilibrium and non-equilibrium conditions, and therefore allows one to calculate pf from equilibrium MD simulations.

  10. Channel characteristics and coordination in three-echelon dual-channel supply chain

    Science.gov (United States)

    Saha, Subrata

    2016-02-01

    We explore the impact of channel structure on the manufacturer, the distributer, the retailer and the entire supply chain by considering three different channel structures in radiance of with and without coordination. These structures include a traditional retail channel and two manufacturer direct channels with and without consistent pricing. By comparing the performance of the manufacturer, the distributer and the retailer, and the entire supply chain in three different supply chain structures, it is established analytically that, under some conditions, a dual channel can outperform a single retail channel; as a consequence, a coordination mechanism is developed that not only coordinates the dual channel but also outperforms the non-cooperative single retail channel. All the analytical results are further analysed through numerical examples.

  11. Calcium ion channel and epilepsy

    Institute of Scientific and Technical Information of China (English)

    Yudan Lü; Weihong Lin; Dihui Ma

    2006-01-01

    OBJECTIVE: To review the relationship between calcium ion channel and epilepsy for well investigating the pathogenesis of epilepsy and probing into the new therapeutic pathway of epilepsy.DATA SOURCES: A computer-based online research Calcium ion channel and epilepsy related articles published between January 1994 and December 2006 in the CKNI and Wanfang database with the key words of "calcium influxion, epilepsy, calcium-channel blocker". The language was limited to Chinese. At the same time,related articles published between January 1993 and December 2006 in Pubmed were searched for on online with the key words of "calcium influxion, epilepsy" in English.STUDY SELECTION: The materials were selected firstly. Inclusive criteria: ① Studies related to calcium ion channel and the pat1hogenesis of epilepsy. ② Studies on the application of calcium ion channel blocker in the treatment of epilepsy. Exclusive criteria: repetitive or irrelated studies.DATA EXTRACTION: According to the criteria, 123 articles were retrieved and 93 were excluded due to repetitive or irrelated studies. Altogether 30 articles met the inclusive criteria, 11 of them were about the structure and characters of calcium ion channel, 10 about calcium ion channel and the pathogenesis of epilepsy and 9 about calcium blocker and the treatment of epilepsy.DATA SYNTHESIS: Calcium ion channels mainly consist of voltage dependent calcium channel and receptor operated calcium channel. Depolarization caused by voltage gating channel-induced influxion is the pathological basis of epileptic attack, and it is found in many studies that many anti-epileptic drugs have potential and direct effect to rivalizing voltage-dependent calcium ion channel.CONCLUSION: Calcium influxion plays an important role in the seizure of epilepsy. Some calcium antagonists seen commonly are being tried in the clinical therapy of epilepsy that is being explored, not applied in clinical practice. If there are enough evidences to

  12. Considerations about PIXE analysis under channeling conditions

    International Nuclear Information System (INIS)

    In this work we have studied some aspects of the X-ray yield induced by protons and H3+ molecules channeling along the and axial directions in GaAs and Si. In this way, it was possible to assess how a PIXE experiment could be affected when such analysis is carried out under channeling conditions. Since the ionization cross sections and the stopping powers have a strong dependence on whether the incoming ion is channeled or not in a particular material, this dependence, in the case of a channeling experiment, may lead to severe distortions of the final elemental concentrations if these effects are not taken into account properly. The results obtained for the matrix analysis of GaAs carried out with the GUPIX software package indicate that the elemental concentrations around the center of the channels are in good agreement with the expected ones. Finally, the potentialities of a channeling PIXE experiment using H3+ molecules are discussed

  13. Channel Networks

    Science.gov (United States)

    Rinaldo, Andrea; Rodriguez-Iturbe, Ignacio; Rigon, Riccardo

    This review proceeds from Luna Leopold's and Ronald Shreve's lasting accomplishments dealing with the study of random-walk and topologically random channel networks. According to the random perspective, which has had a profound influence on the interpretation of natural landforms, nature's resiliency in producing recurrent networks and landforms was interpreted to be the consequence of chance. In fact, central to models of topologically random networks is the assumption of equal likelihood of any tree-like configuration. However, a general framework of analysis exists that argues that all possible network configurations draining a fixed area are not necessarily equally likely. Rather, a probability P(s) is assigned to a particular spanning tree configuration, say s, which can be generally assumed to obey a Boltzmann distribution: P(s) % e^-H(s)/T, where T is a parameter and H(s) is a global property of the network configuration s related to energetic characters, i.e. its Hamiltonian. One extreme case is the random topology model where all trees are equally likely, i.e. the limit case for T6 4 . The other extreme case is T 6 0, and this corresponds to network configurations that tend to minimize their total energy dissipation to improve their likelihood. Networks obtained in this manner are termed optimal channel networks (OCNs). Observational evidence suggests that the characters of real river networks are reproduced extremely well by OCNs. Scaling properties of energy and entropy of OCNs suggest that large network development is likely to effectively occur at zero temperature (i.e. minimizing its Hamiltonian). We suggest a corollary of dynamic accessibility of a network configuration and speculate towards a thermodynamics of critical self-organization. We thus conclude that both chance and necessity are equally important ingredients for the dynamic origin of channel networks---and perhaps of the geometry of nature.

  14. Final Technical Report on DE-SC00002460 [Bimetallic or trimetallic materials with structural metal centers based on Mn, Fe or V

    Energy Technology Data Exchange (ETDEWEB)

    Takeuchi, Esther Sans [Stony Brook University; Takeuchi, Kenneth James [Stony Brook University; Marschilok, Amy Catherine [Stony Brook University

    2013-07-26

    Bimetallic or trimetallic materials with structural metal centers based on Mn, Fe or V were investigated under this project. These metal centers are the focus of this research as they have high earth abundance and have each shown success as cathode materials in lithium batteries. Silver ion, Ag{sup +}, was initially selected as the displacement material as reduction of this center should result in increased conductivity as Ag{sup 0} metal particles are formed in-situ upon electrochemical reduction. The in-situ formation of metal nanoparticles upon electrochemical reduction has been previously noted, and more recently, we have investigated the resulting increase in conductivity. Layered materials as well as materials with tunnel or channel type structures were selected. Layered materials are of interest as they can provide 2-dimensional ion mobility. Tunnel or channel structures are also of interest as they provide a rigid framework that should remain stable over many discharge/charge cycles. We describe some examples of materials we have synthesized that demonstrate promising electrochemistry.

  15. Proton channel models

    OpenAIRE

    Pupo, Amaury; Baez-Nieto, David; Martínez, Agustín; Latorre, Ramón; González, Carlos

    2014-01-01

    Voltage-gated proton channels are integral membrane proteins with the capacity to permeate elementary particles in a voltage and pH dependent manner. These proteins have been found in several species and are involved in various physiological processes. Although their primary topology is known, lack of details regarding their structures in the open conformation has limited analyses toward a deeper understanding of the molecular determinants of their function and regulation. Consequently, the f...

  16. Ions in Fluctuating Channels: Transistors Alive

    OpenAIRE

    Eisenberg, Bob

    2005-01-01

    Ion channels are proteins with a hole down the middle embedded in cell membranes. Membranes form insulating structures and the channels through them allow and control the movement of charged particles, spherical ions, mostly Na+, K+, Ca++, and Cl-. Membranes contain hundreds or thousands of types of channels, fluctuating between open conducting, and closed insulating states. Channels control an enormous range of biological function by opening and closing in response to specific stimuli using ...

  17. Potassium channels – multiplicity and challenges

    OpenAIRE

    Jenkinson, Donald H

    2006-01-01

    The development of our knowledge of the function, structure and pharmacology of K+ channels is briefly outlined. This is the most diverse of all the ion channel families with at least 75 coding genes in mammals. Alternative splicing as well as variations in the channel subunits and accessory proteins that co-assemble to form the functional channel add to the multiplicity. Whereas diversity of this order suggests that it may be possible to develop new classes of drug, for example, for immunomo...

  18. FMCG companies specific distribution channels

    Directory of Open Access Journals (Sweden)

    Ioana Barin

    2009-12-01

    Full Text Available Distribution includes all activities undertaken by the producer, alone or in cooperation, since the end of the final finished products or services until they are in possession of consumers. The distribution consists of the following major components: distribution channels or marketing channels, which together form a distribution network; logistics o rphysical distribution. In order to effective achieve, distribution of goods requires an amount of activities and operational processes related to transit of goods from producer to consumer, the best conditions, using existing distribution channels and logistics system. One of the essential functions of a distribution is performing acts of sale, through which, with the actual movement of goods, their change of ownership takes place, that the successive transfer of ownership from producer to consumer. This is an itinerary in the economic cycle of goods, called the distribution channel.

  19. Value Assessment of Enterprise Marketing Channels

    OpenAIRE

    Lixia Yan

    2010-01-01

    The factors that impose influence on the value assessment of enterprise’s marketing channels are numerous, and complex in relations with each other. Whether the value of enterprise’s marketing channels is good or not can finally be determined by using principal component analysis to eliminate the related effects among the assessment indicators and reduce the workload of selecting indicators, and expert evaluating and assessing the value of enterprise’s marketing channel by relevant indicators...

  20. [Synopsis about the hypothesis of "information channel" of channel-collateral system].

    Science.gov (United States)

    Chang, Xi-Lang

    2008-10-01

    The author of the present paper founded a theorem about the "incompleteness of single channel structure" (nerve, blood vessel, lymphatic, interspace, aperture, etc.) through quantitative and qualitative analysis about the economic information channel in the human body, which eliminates the probability of single channel structure in the information channel of channel (meridian)-collateral system. After comprehensive analysis on the current researches, the author puts forward a neodoxy, i.e., the body "information channel" structure of the channel-collateral system, mainly follows the distribution regularity of systemic statistics, and is not a single specific entity; various layers of the information channel in the main stems of the channel-collaterals are composed of optimized structure tissues. Hence, the structure of this information channel of channel-collateral system is an overall-optimized, sequential and compatible systemic structure. From this neodoxy, the author brings forward a working principle of channel-collaterals, which is supported theoretically by bio-auxology. The longitudinal distribution of the main stems of meridian-collaterals is considered to result from that in the process of the animal evolution, in the animals moving forward, the microscopic complicated movement of intracorporeal information and energy molecules is related to the forward macroscopic and non-uniform movement of organism in trans-measure. Its impulse and kinetic momentum forms a main vector in the longitudinal direction of the body (the direction of the main stem of channel-collaterals). In order to adapt to and utilize natural regularities, the main stems of the channel-collaterals gradually differentiate and evolve in the living organism, forming a whole system. The "hypothesis of biological origin of channel-collateral system" and "that of information channel of the channel-collaterals in the body" constitute a relatively complete theoretical system framework. PMID

  1. Short-Channel Tunneling Field-Effect Transistor with Drain-Overlap and Dual-Metal Gate Structure for Low-Power and High-Speed Operations.

    Science.gov (United States)

    Yoon, Young Jun; Eun, Hye Rim; Seo, Jae Hwa; Kang, Hee-Sung; Lee, Seong Min; Lee, Jeongmin; Cho, Seongjae; Tae, Heung-Sik; Lee, Jung-Hee; Kang, In Man

    2015-10-01

    We have investigated and proposed a highly scaled tunneling field-effect transistor (TFET) based on Ge/GaAs heterojunction with a drain overlap to suppress drain-induced barrier thinning (DIBT) and improve low-power (LP) performance. The highly scaled TFET with a drain overlap achieves lower leakage tunneling current because of the decrease in tunneling events between the source and drain, whereas a typical short-channel TFET suffers from a great deal of tunneling leakage current due to the DIBT at the off-state. However, the drain overlap inevitably increases the gate-to-drain capacitance (Cgd) because of the increase in the overlap capacitance (Cov) and inversion capacitance (Cinv). Thus, in this work, a dual-metal gate structure is additionally applied along with the drain overlap. The current performance and the total gate capacitance (Cgg) of the device with a dual-metal gate can be possibly controlled by adjusting the metal gate workfunction (φgate) and φoverlap-gate in the overlapping regions. As a result, the intrinsic delay time (τ) is greatly reduced by obtaining lower Cgg divided by the on-state current (Ion), i.e., Cgg/Ion. We have successfully demonstrated excellent LP and high-speed performance of a highly scaled TFET by adopting both drain overlap and dual-metal gate with DIBT minimization. PMID:26726346

  2. Structure, texture, and mechanical properties of an MA2-1hp magnesium alloy after two-stage equal-channel angular pressing and intermediate annealing

    Science.gov (United States)

    Serebryany, V. N.; Perezhogin, V. Yu.; Raab, G. I.; Kopylov, V. I.; Tabachkova, N. Yu.; Sirotinkin, V. P.; Dobatkin, S. V.

    2015-01-01

    The effect of two-stage equal-channel angular pressing (ECAP) on the microstructure, the texture, and the mechanical properties of an MA2-1hp magnesium alloy is analyzed. ECAP leads to the formation of a submicrocrystalline structure with an average grain size of 640 nm, which includes Mg17Al12 phase particles with an average grain size of 240 nm and a volume fracture of 5.5%. A scattered tilted basal texture forms after ECAP, and its experimental pole figures are used for calculating orientation distribution functions and determining the volume fractions of the main orientations and the Schmid factors for different deformation systems. An increased activation of basal slip is found after both the first and the second stages of ECAP. As a result of two-stage ECAP, the strength properties of the alloy that correspond to the minimum acceptable values achieved by direct compression are obtained. Ductility is 44 and 18% after the first stage of ECAP plus subsequent annealing and after the second stage, respectively, which is almost four and two times higher than the initial value. The resulting strength mechanical properties of the alloy after the first and the second ECAP stages are analyzed using the Hall-Petch relation.

  3. Influence of initial annealing on structure evolution and magnetic properties of 3.4% Si non-oriented steel during final annealing

    Energy Technology Data Exchange (ETDEWEB)

    Simões Mendanha Pedrosa, Josiane [Department of Physics, Federal University of Ouro Preto, Ouro Preto MG-3540000 (Brazil); Costa Paolinelli, Sebastião da [Research Department Aperam South America, Praça Primeiro de Maio, 9, Timóteo MG-35180018 (Brazil); Barros Cota, André, E-mail: abcota@ufop.br [Department of Physics, Federal University of Ouro Preto, Ouro Preto MG-3540000 (Brazil)

    2015-11-01

    The effect of the initial annealing on structure evolution and magnetic properties during the final annealing of a 3.4% Si non-oriented grain steel was evaluated. Half of the samples were submitted to initial annealing at 1030 °C before cold rolling and all samples were subjected to final annealing process at temperatures from 540 °C to 1100 °C. The magnetic induction and core loss in the final samples, the microstructure by optical microscopy and the crystallographic texture by X-ray diffraction and EBSD were evaluated. The results show that the samples without initial annealing presented better magnetic properties than the samples with initial annealing, due to the higher ratio between Eta fiber and Gamma fiber volume fractions (Eta/Gamma ratio) in their structure after final annealing. - Highlights: • Texture and magnetic properties of 3.4% Si non-oriented electrical steel were measured. • Without initial annealing, better texture and magnetic properties were obtained. • Good texture and magnetic properties are obtained with Steckel hot band structure.

  4. Nanoimprint-Assisted Shear Exfoliation (NASE) for Producing Multilayer MoS2 Structures as Field-Effect Transistor Channel Arrays.

    Science.gov (United States)

    Chen, Mikai; Nam, Hongsuk; Rokni, Hossein; Wi, Sungjin; Yoon, Jeong Seop; Chen, Pengyu; Kurabayashi, Katsuo; Lu, Wei; Liang, Xiaogan

    2015-09-22

    MoS2 and other semiconducting transition metal dichalcogenides (TMDCs) are of great interest due to their excellent physical properties and versatile chemistry. Although many recent research efforts have been directed to explore attractive properties associated with MoS2 monolayers, multilayer/few-layer MoS2 structures are indeed demanded by many practical scale-up device applications, because multilayer structures can provide sizable electronic/photonic state densities for driving upscalable electrical/optical signals. Currently there is a lack of processes capable of producing ordered, pristine multilayer structures of MoS2 (or other relevant TMDCs) with manufacturing-grade uniformity of thicknesses and electronic/photonic properties. In this article, we present a nanoimprint-based approach toward addressing this challenge. In this approach, termed as nanoimprint-assisted shear exfoliation (NASE), a prepatterned bulk MoS2 stamp is pressed into a polymeric fixing layer, and the imprinted MoS2 features are exfoliated along a shear direction. This shear exfoliation can significantly enhance the exfoliation efficiency and thickness uniformity of exfoliated flakes in comparison with previously reported exfoliation processes. Furthermore, we have preliminarily demonstrated the fabrication of multiple transistors and biosensors exhibiting excellent device-to-device performance consistency. Finally, we present a molecular dynamics modeling analysis of the scaling behavior of NASE. This work holds significant potential to leverage the superior properties of MoS2 and other emerging TMDCs for practical scale-up device applications. PMID:26302003

  5. Formation of secondary phases during deep geological final disposal of research reactor fuel elements. Structure and phase analysis

    International Nuclear Information System (INIS)

    For the assessment of a confident und sustainable final disposal of high level radioactive waste - fuel elements of german research reactors also account for such waste - in suitable, deep geological facilities, processes of the alteration of the disposed of waste and therefore the formation of the corrosion products, i. e. secondary phases must be well understood considering an accident scenario of a potential water inflow. In order to obtain secondary phases non-irradiated research reactor fuel elements (FR-BE) consisting of UAlx-Al were subjected to magnesium chloride rich brine (brine 2, salt repository) and to clay pore solution, respectively and furthermore of the type U3Si2-Al were solely subjected to magnesium chloride rich brine. Considering environmental aspects of final repositories the test conditions of the corrosion experiments were adjusted in a way that the temperature was kept constant at 90 C and a reducing anaerobic environment was ensured. As major objective of this research secondary phases, obtained from the autoclave experiments after appropriate processing and grain size separation have been identified and quantified. Powder X-ray diffraction (PXRD) and the application of Rietveld refinement methods allowed the identification of the corrosion products and a quantitative assessment of crystalline and amorphous contents. Scanning and transmission electron microscopy were additionally applied as a complementary method for the characterisation of the secondary phases. The qualitative phase analysis of the preprocessed secondary phases of the systems UAlx-Al and U3Si2-Al in brine 2 shows many similarities. Lesukite - an aluminium chloro hydrate - was observed for the first time considering the given experimental conditions. Further on different layered structures of the LDH type, iron oxyhydroxide and possibly iron chlorides, uncorroded residues of nuclear fuel and elementary iron were identified as well. Depending on preceding preparation

  6. Optimization of bandwidth of communication channels of corporate networks

    Directory of Open Access Journals (Sweden)

    G. I. Bondarenko

    2014-09-01

    Full Text Available Introduction. This article contains overview of the organization of communication between applications on the corporate network. It is stated that the main digital channel (channel B - 64 kbit/s and the primary digital channel (channel E1 the digital stream - 2048 kbit/s are used as the main channels in corporate networks. Problem areas of the functioning of the corporate network are identified. There are the rent of communication channels, which is growing rapidly with increasing the quality and speed of data transmission, and optimal use of bandwidth of communication channels. Setting of task. Optimal use of transmission channels bandwidth and minimizing the rent cost of channels is possible in two ways - the use of compression techniques of voice and video information and the application of variable structure of channels by using various-speed transmission channels. Differential pulse code modulation, adaptive differential pulse code modulation are the modern methods of speech signals processing. Organization of various-speed channels is performed in the structure of the BCC (for speech signals or PCR (for video. Suggestions for optimizing the structure of the channel signals. Proposed method of various-speed channels formation by using the channel intervals appropriate BCC (octets in the structure of signals E1 as envelopes containing various-speed channels. Channels can be selected for synchronization procedure CRC to simplify recognition of channels in the structure of E1. In this case, the minimal speed in the channel is 4 kbit/s. Conclusions. The proposed structure of envelopes is based on octet channel intervals of standard group signal of the primary group plesiochronous hierarchy E1 when transferring various-speed digital signals maximum allows to use the bandwidth at a fixed structure of channel interval, it makes possible to agree on the structure of the various-speed signals with the existing in communication networks.

  7. Single-Channel Recording of Ligand-Gated Ion Channels.

    Science.gov (United States)

    Plested, Andrew J R

    2016-01-01

    Single-channel recordings reveal the microscopic properties of individual ligand-gated ion channels. Such recordings contain much more information than measurements of ensemble behavior and can yield structural and functional information about the receptors that participate in fast synaptic transmission in the brain. With a little care, a standard patch-clamp electrophysiology setup can be adapted for single-channel recording in a matter of hours. Thenceforth, it is a realistic aim to record single-molecule activity with microsecond resolution from arbitrary cell types, including cell lines and neurons. PMID:27480725

  8. Band structure and decay channels of thorium-229 low-lying isomeric state for ensemble of thorium atoms adsorbed on calcium fluoride

    Energy Technology Data Exchange (ETDEWEB)

    Borisyuk, Petr V.; Vasilyev, Oleg S.; Krasavin, Andrey V.; Troyan, Victor I. [National Research Nuclear University ' ' MEPhI' ' (Moscow Engineering Physics Institute), Kashirskoye shosse 31, 115409 Moscow (Russian Federation); Lebedinskii, Yury Yu. [National Research Nuclear University ' ' MEPhI' ' (Moscow Engineering Physics Institute), Kashirskoye shosse 31, 115409 Moscow (Russian Federation); Moscow Institute of Physics and Technology (State University), Institutskiy per. 9, 141700 Dolgoprudny, Moscow region (Russian Federation); Tkalya, Eugene V. [Skobeltsyn Institute of Nuclear Physics, Lomonosov Moscow State University, Leninskie gory, 119991 Moscow (Russian Federation); Nuclear Safety Institute of Russian Academy of Science, Bol' shaya Tulskaya 52, 115191 Moscow (Russian Federation)

    2015-12-15

    The results are presented on the study of the electronic structure of thorium atoms adsorbed by the liquid atomic layer deposition from aqueous solution of thorium nitrate on the surface of CaF{sub 2}. The chemical state of the atoms and the change of the band structure in the surface layers of Th/CaF{sub 2} system on CaF{sub 2} substrate were investigated by XPS and REELS techniques. It was found that REELS spectra for Th/CaF{sub 2} system include peaks in the region of low energy losses (3-7 eV) which are missing in the similar spectra for pure CaF{sub 2}. It is concluded that the presence of the observed features in the REELS spectra is associated with the chemical state of thorium atoms and is caused by the presence of uncompensated chemical bonds at the Th/CaF{sub 2} interface, and, therefore, by the presence of unbound 6d- and 7s-electrons of thorium atoms. Assuming the equivalence of the electronic configuration of thorium-229 and thorium-232 atoms, an estimate was made on the time decay of the excited state of thorium-229 nuclei through the channel of the electron conversion. It was found that the relaxation time is about 40 μs for 6d-electrons, and about 1 μs for 7s-electrons. (copyright 2015 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim)

  9. Channel function reconstitution and re-animation: a single-channel strategy in the postcrystal age.

    Science.gov (United States)

    Oiki, Shigetoshi

    2015-06-15

    The most essential properties of ion channels for their physiologically relevant functions are ion-selective permeation and gating. Among the channel species, the potassium channel is primordial and the most ubiquitous in the biological world, and knowledge of this channel underlies the understanding of features of other ion channels. The strategy applied to studying channels changed dramatically after the crystal structure of the potassium channel was resolved. Given the abundant structural information available, we exploited the bacterial KcsA potassium channel as a simple model channel. In the postcrystal age, there are two effective frameworks with which to decipher the functional codes present in the channel structure, namely reconstitution and re-animation. Complex channel proteins are decomposed into essential functional components, and well-examined parts are rebuilt for integrating channel function in the membrane (reconstitution). Permeation and gating are dynamic operations, and one imagines the active channel by breathing life into the 'frozen' crystal (re-animation). Capturing the motion of channels at the single-molecule level is necessary to characterize the behaviour of functioning channels. Advanced techniques, including diffracted X-ray tracking, lipid bilayer methods and high-speed atomic force microscopy, have been used. Here, I present dynamic pictures of the KcsA potassium channel from the submolecular conformational changes to the supramolecular collective behaviour of channels in the membrane. These results form an integrated picture of the active channel and offer insights into the processes underlying the physiological function of the channel in the cell membrane. PMID:25833254

  10. Channeling experiment

    International Nuclear Information System (INIS)

    Channeling of water flow and tracer transport in real fractures in a granite body at Stripa have been investigated experimentally. The experimental site was located 360 m below the ground level. Two kinds of experiments were performed. In the single hole experiments, 20 cm diameter holes were drilled about 2.5 m into the rock in the plane of the fracture. Specially designed packers were used to inject water into the fracture in 5 cm intervals all along the fracture trace in the hole. The variation of the injection flowrates along the fracture were used to determine the transmissivity variations in the fracture plane. Detailed photographs were taken from inside the hole and the visual fracture aperture was compared with the injection flowrates in the same locations. Geostatistical methods were used to evaluate the results. Five holes were measured in great detail. In addition 7 holes were drilled and scanned by simpler packer systems. A double hole experiment was performed where two parallel holes were drilled in the same fracture plane at nearly 2 m distance. Pressure pulse tests were made between the holes in both directions. Tracers were injected in 5 locations in one hole and monitored for in many locations in the other hole. The single hole experiment and the double hole experiment show that most of the fracture planes are tight but that there are open sections which form connected channels over distances of at least 2 meters. It was also found in the double hole experiment that the investigated fracture was intersected by at least one fracture between the two holes which diverted a large amount of the injected tracers to several distant locations at the tunnel wall. (authours)

  11. Structure and function of the voltage sensor of sodium channels probed by a beta-scorpion toxin. : Voltage Sensor of Sodium Channels Probed by a β-Scorpion Toxin

    OpenAIRE

    Cestèle, Sandrine; Yarov-Yarovoy, Vladimir; Qu, Yusheng; Sampieri, François; Scheuer, Todd; Catterall, William,

    2006-01-01

    Voltage sensing by voltage-gated sodium channels determines the electrical excitability of cells, but the molecular mechanism is unknown. beta-Scorpion toxins bind specifically to neurotoxin receptor site 4 and induce a negative shift in the voltage dependence of activation through a voltage sensor-trapping mechanism. Kinetic analysis showed that beta-scorpion toxin binds to the resting state, and subsequently the bound toxin traps the voltage sensor in the activated state in a voltage-depend...

  12. Experimental investigation on steady granular flows interacting with an obstacle down an inclined channel: study of the dead zone upstream from the obstacle. Application to interaction between dense snow avalanches and defence structures

    Directory of Open Access Journals (Sweden)

    T. Faug

    2002-01-01

    Full Text Available An experimental investigation with dry granular flows passing over an obstacle down a rough inclined channel has been performed. The aim is to improve our understanding of the interaction between dense snow avalanches and defence structures. Specific attention was directed to the study of the zone of influence upstream from the obstacle, linked to the formation of a dead zone. The dead zone length L was systematically measured as a function of the obstacle height H and the channel inclination θ, for several discharges. In a whole range of channel inclinations, all the data are shown to collapse into a single curve when properly scaled. The scaling is based on the introduction of a theoretical deposit length (depending on H, θ and the internal friction angle of the material, φ and a Froude number of the flow depending on the obstacle height.

  13. Atomic force microscopy and MD simulations reveal pore-like structures of all-D-enantiomer of Alzheimer's β-amyloid peptide: relevance to the ion channel mechanism of AD pathology.

    Science.gov (United States)

    Connelly, Laura; Jang, Hyunbum; Arce, Fernando Teran; Capone, Ricardo; Kotler, Samuel A; Ramachandran, Srinivasan; Kagan, Bruce L; Nussinov, Ruth; Lal, Ratnesh

    2012-02-01

    Alzheimer's disease (AD) is a protein misfolding disease characterized by a buildup of β-amyloid (Aβ) peptide as senile plaques, uncontrolled neurodegeneration, and memory loss. AD pathology is linked to the destabilization of cellular ionic homeostasis and involves Aβ peptide-plasma membrane interactions. In principle, there are two possible ways through which disturbance of the ionic homeostasis can take place: directly, where the Aβ peptide either inserts into the membrane and creates ion-conductive pores or destabilizes the membrane organization, or, indirectly, where the Aβ peptide interacts with existing cell membrane receptors. To distinguish between these two possible types of Aβ-membrane interactions, we took advantage of the biochemical tenet that ligand-receptor interactions are stereospecific; L-amino acid peptides, but not their D-counterparts, bind to cell membrane receptors. However, with respect to the ion channel-mediated mechanism, like L-amino acids, D-amino acid peptides will also form ion channel-like structures. Using atomic force microscopy (AFM), we imaged the structures of both D- and L-enantiomers of the full length Aβ(1-42) when reconstituted in lipid bilayers. AFM imaging shows that both L- and D-Aβ isomers form similar channel-like structures. Molecular dynamics (MD) simulations support the AFM imaged 3D structures. Previously, we have shown that D-Aβ(1-42) channels conduct ions similarly to their L- counterparts. Taken together, our results support the direct mechanism of Aβ ion channel-mediated destabilization of ionic homeostasis rather than the indirect mechanism through Aβ interaction with membrane receptors. PMID:22217000

  14. Market structures analysis of closed-loop supply chain in hybrid recycling channels%混合回收渠道下的闭环供应链市场结构分析

    Institute of Scientific and Technical Information of China (English)

    程晋石; 李帮义

    2013-01-01

    This paper researched remanufacturing closed-loop supply chain system that composed of a manufacturer which leads game, a retailer and a third-party collector followed the decision which was responsible for recycling. When a manufacturer was the leader of the game, it calculated the decision variables and profits of the closed-loop supply chain under four different market structures (M→R +T、M→R→T、M→T→R and M→C) ,then analyzed the calculated results in-depth. Finally formed the condition to avoid poor market structure ( M → C) based on repeated games. Studies show that: the recovery is lowest in the M →C market structure while the highest in the M→R + T market structure; the profits of manufacturers and supply chain is the least in the M →C market structure while the highest in the M→R + T market structure; the total supply chain profits is exactly the same in the M→ R →T and M→T→ R market structure. In the case of mixed recycling channels, the profit distribution parameter a in group C is unstable; something could make the least efficient market structure M → C not to exist for a long time.%研究了一个制造商领导市场、一个零售商和一个第三方回收商共同负责回收且跟随决策的再制造闭环供应链系统.对制造商领导博弈时的四种不同市场结构下(M→R+T、M→R→T、M→T→R和M→C)的闭环供应链的各方决策变量值以及利润值进行计算及分析,最后采用重复博弈方法对避免劣市场结构(M→C)成立的条件进行了讨论.研究表明,基于以上条件,M→C市场结构下的回收价最低,在M→R+T市场结构下最高;M→C市场结构下,制造商的利润与供应链利润最低;M→R+T市场结构下的制造商利润最高且供应链利润也最高.M→R→T和M→T→R市场结构的供应链总利润结果完全相同.集团C中的利润分配参数α具有不稳定性,使效率最低的M→C市场结构无法长期存在.

  15. Ammonium recruitment and ammonia transport by E. coli ammonia channel AmtB

    DEFF Research Database (Denmark)

    Nygaard, Thomas Pedersen; Rovira, C.; Peters, Günther H.j.;

    2006-01-01

    explain why ammonia conduction is lost upon mutation of the conserved residue D160. We unify previous suggestions of D160 having either a structural or an ammonium binding function. Finally, our simulations show that the channel lumen is hydrated from the cytoplasmic side via the formation of single. le...

  16. Role of Tryptophan Residues in Gramicidin Channel Organization and Function

    OpenAIRE

    Chattopadhyay, Amitabha; RAWAT, SATINDER S.; Greathouse, Denise V.; Kelkar, Devaki A.; Koeppe, Roger E.

    2008-01-01

    The linear peptide gramicidin forms prototypical ion channels specific for monovalent cations and has been used extensively to study the organization, dynamics, and function of membrane-spanning channels. The tryptophan residues in gramicidin channels are crucial for maintaining the structure and function of the channel. We explored the structural basis for the reduction in channel conductance in the case of single-tryptophan analogs of gramicidin with three Trp → hydrophobic substitutions us...

  17. Surface Smoothing of Blasted Glass Micro-Channels Using Abrasive Waterjet

    International Nuclear Information System (INIS)

    Powder blasting, which is an efficient micromachining method for glass, silicon, and ceramics, has a critical disadvantage in that the surface finish is poor owing to the brittle fracture of materials. Low-pressure waterjet machining can be applied to smoothen the rough surface inside the blasted structure. In this study, the surface roughness and sectional dimension of micro-channels are observed during the repetitive application of a waterjet to blasted micro-channels. The asperities and subsurface cracks created by blasting are removed by waterjet machining. Along with the surface roughness, it is found that the sectional dimension increases and the edges of the finished micro-channel become slightly round. Finally, a microfluidic chip is machined by the blasting-waterjet process and a transparent microfluidic channel is obtained efficiently

  18. Lipid Ion Channels

    CERN Document Server

    Heimburg, Thomas

    2010-01-01

    The interpretation electrical phenomena in biomembranes is usually based on the assumption that the experimentally found discrete ion conduction events are due to a particular class of proteins called ion channels while the lipid membrane is considered being an inert electrical insulator. The particular protein structure is thought to be related to ion specificity, specific recognition of drugs by receptors and to macroscopic phenomena as nerve pulse propagation. However, lipid membranes in their chain melting regime are known to be highly permeable to ions, water and small molecules, and are therefore not always inert. In voltage-clamp experiments one finds quantized conduction events through protein-free membranes in their melting regime similar to or even undistinguishable from those attributed to proteins. This constitutes a conceptual problem for the interpretation of electrophysiological data obtained from biological membrane preparations. Here, we review the experimental evidence for lipid ion channels...

  19. Umbrella structure and channel-wall stoping in the Cambrian St. Roch Formation, Quebec Appalachians: significance for particle support mechanisms and turbulence development in hyper-concentrated sediment gravity flows

    Science.gov (United States)

    Hesse, Reinhard; Fong, Christopher

    2014-03-01

    Umbrella structure is a newly recognized sedimentary structure associated with large platy clasts in resedimented boulder-bearing pebble conglomerate with a sandy matrix. It consists of a sand rim that lacks pebbles on parts or the entire underside of platy boulders, whereas on the upper side, pebbles are in direct contact with the boulders. The depositing processes were high- to hyper-concentrated sediment gravity flows in a submarine channel or canyon on the Cambrian continental slope of North America bordering the Iapetus Ocean. The structure occurs predominantly where clasts dip moderately in the down-current direction. Based on the association of the structure with slightly forward dipping slabs, it is proposed that these down-current dipping slabs may have been in the process of counter-clockwise rotation that was aborted and may have generated a pressure shadow on the underside enabling the inrush of fluid and the infiltration of sand into the anomalous low-pressure zone. The structure has implications for particle support mechanisms in high- to hyper-concentrated sedimentary gravity flows, in that it redirects attention to the much debated mechanism of dispersive pressure and alternatives. It provides an observable sediment structure that supports dispersive pressure which so far depended on experimental evidence and theoretical arguments alone. Vrolijk and Southard's (1997) concept of a `laminar sheared layer' is here for the first time interpreted as having an upward-moving `free-surface' layer effect during deposition from hyper-concentrated flows. Channel-wall stoping involves unlithified turbiditic spillover sand in the levee sediment of the canyon wall that was washed out by the upper diluted parts of the high-concentration flows coming down the channel and leaving a niche in the wall that was filled with coarser channel-axis facies by the same flow (or later flows) when its aggradation reached the level of the niche. The contact between turbidite and

  20. Optimized teleportation in Gaussian noisy channels

    International Nuclear Information System (INIS)

    We address continuous variable quantum teleportation in Gaussian quantum noisy channels, either thermal or squeezed-thermal. We first study the propagation of twin-beam and evaluate a threshold for its separability. We find that the threshold for purely thermal channels is always larger than for squeezed-thermal ones. On the other hand, we show that squeezing the channel improves teleportation of squeezed states and, in particular, we find the class of squeezed states that are better teleported in a given noisy channel. Finally, we find regimes where optimized teleportation of squeezed states improves amplitude-modulated communication in comparison with direct transmission