WorldWideScience

Sample records for cgh array designed

  1. Molecular karyotyping: array CGH quality criteria for constitutional genetic diagnosis.

    Science.gov (United States)

    Vermeesch, Joris R; Melotte, Cindy; Froyen, Guy; Van Vooren, Steven; Dutta, Binita; Maas, Nicole; Vermeulen, Stefan; Menten, Björn; Speleman, Frank; De Moor, Bart; Van Hummelen, Paul; Marynen, Peter; Fryns, Jean-Pierre; Devriendt, Koen

    2005-03-01

    Array CGH (comparative genomic hybridization) enables the identification of chromosomal copy number changes. The availability of clone sets covering the human genome opens the possibility for the widespread use of array CGH for both research and diagnostic purposes. In this manuscript we report on the parameters that were critical for successful implementation of the technology, assess quality criteria, and discuss the potential benefits and pitfalls of the technology for improved pre- and postnatal constitutional genetic diagnosis. We propose to name the genome-wide array CGH "molecular karyotyping," in analogy with conventional karyotyping that uses staining methods to visualize chromosomes.

  2. Whole genome amplification and its impact on CGH array profiles

    Directory of Open Access Journals (Sweden)

    Meldrum Cliff

    2008-07-01

    Full Text Available Abstract Background Some array comparative genomic hybridisation (array CGH platforms require a minimum of micrograms of DNA for the generation of reliable and reproducible data. For studies where there are limited amounts of genetic material, whole genome amplification (WGA is an attractive method for generating sufficient quantities of genomic material from miniscule amounts of starting material. A range of WGA methods are available and the multiple displacement amplification (MDA approach has been shown to be highly accurate, although amplification bias has been reported. In the current study, WGA was used to amplify DNA extracted from whole blood. In total, six array CGH experiments were performed to investigate whether the use of whole genome amplified DNA (wgaDNA produces reliable and reproducible results. Four experiments were conducted on amplified DNA compared to unamplified DNA and two experiments on unamplified DNA compared to unamplified DNA. Findings All the experiments involving wgaDNA resulted in a high proportion of losses and gains of genomic material. Previously, amplification bias has been overcome by using amplified DNA in both the test and reference DNA. Our data suggests that this approach may not be effective, as the gains and losses introduced by WGA appears to be random and are not reproducible between different experiments using the same DNA. Conclusion In light of these findings, the use of both amplified test and reference DNA on CGH arrays may not provide an accurate representation of copy number variation in the DNA.

  3. CGHPRO – A comprehensive data analysis tool for array CGH

    Directory of Open Access Journals (Sweden)

    Lenzner Steffen

    2005-04-01

    Full Text Available Abstract Background Array CGH (Comparative Genomic Hybridisation is a molecular cytogenetic technique for the genome wide detection of chromosomal imbalances. It is based on the co-hybridisation of differentially labelled test and reference DNA onto arrays of genomic BAC clones, cDNAs or oligonucleotides, and after correction for various intervening variables, loss or gain in the test DNA can be indicated from spots showing aberrant signal intensity ratios. Now that this technique is no longer confined to highly specialized laboratories and is entering the realm of clinical application, there is a need for a user-friendly software package that facilitates estimates of DNA dosage from raw signal intensities obtained by array CGH experiments, and which does not depend on a sophisticated computational environment. Results We have developed a user-friendly and versatile tool for the normalization, visualization, breakpoint detection and comparative analysis of array-CGH data. CGHPRO is a stand-alone JAVA application that guides the user through the whole process of data analysis. The import option for image analysis data covers several data formats, but users can also customize their own data formats. Several graphical representation tools assist in the selection of the appropriate normalization method. Intensity ratios of each clone can be plotted in a size-dependent manner along the chromosome ideograms. The interactive graphical interface offers the chance to explore the characteristics of each clone, such as the involvement of the clones sequence in segmental duplications. Circular Binary Segmentation and unsupervised Hidden Markov Model algorithms facilitate objective detection of chromosomal breakpoints. The storage of all essential data in a back-end database allows the simultaneously comparative analysis of different cases. The various display options facilitate also the definition of shortest regions of overlap and simplify the

  4. Estimation of tumor heterogeneity using CGH array data

    Directory of Open Access Journals (Sweden)

    Li Shengting

    2009-01-01

    Full Text Available Abstract Background Array-based comparative genomic hybridization (CGH is a commonly-used approach to detect DNA copy number variation in whole genome-wide screens. Several statistical methods have been proposed to define genomic segments with different copy numbers in cancer tumors. However, most tumors are heterogeneous and show variation in DNA copy numbers across tumor cells. The challenge is to reveal the copy number profiles of the subpopulations in a tumor and to estimate the percentage of each subpopulation. Results We describe a relation between experimental data and exact DNA copy number and develop a statistical method to reveal the heterogeneity of tumors containing a mixture of different-stage cells. Furthermore, we validate the method on simulated data and apply the method to 29 pairs of breast primary tumors and their matched lymph node metastases. Conclusion We demonstrate a new method for CGH array analysis that allows a tumor sample to be classified according to its heterogeneity. The method gives an interpretable series of copy number profiles, one for each major subpopulation in a tumor. The profiles facilitate identification of copy number alterations in cancer development.

  5. Molecular karyotyping by array CGH in a Russian cohort of children with intellectual disability, autism, epilepsy and congenital anomalies

    Directory of Open Access Journals (Sweden)

    Iourov Ivan Y

    2012-12-01

    Full Text Available Abstract Background Array comparative genomic hybridization (CGH has been repeatedly shown to be a successful tool for the identification of genomic variations in a clinical population. During the last decade, the implementation of array CGH has resulted in the identification of new causative submicroscopic chromosome imbalances and copy number variations (CNVs in neuropsychiatric (neurobehavioral diseases. Currently, array-CGH-based technologies have become an integral part of molecular diagnosis and research in individuals with neuropsychiatric disorders and children with intellectual disability (mental retardation and congenital anomalies. Here, we introduce the Russian cohort of children with intellectual disability, autism, epilepsy and congenital anomalies analyzed by BAC array CGH and a novel bioinformatic strategy. Results Among 54 individuals highly selected according to clinical criteria and molecular and cytogenetic data (from 2426 patients evaluated cytogenetically and molecularly between November 2007 and May 2012, chromosomal imbalances were detected in 26 individuals (48%. In two patients (4%, a previously undescribed condition was observed. The latter has been designated as meiotic (constitutional genomic instability resulted in multiple submicroscopic rearrangements (including CNVs. Using bioinformatic strategy, we were able to identify clinically relevant CNVs in 15 individuals (28%. Selected cases were confirmed by molecular cytogenetic and molecular genetic methods. Eight out of 26 chromosomal imbalances (31% have not been previously reported. Among them, three cases were co-occurrence of subtle chromosome 9 and 21 deletions. Conclusions We conducted an array CGH study of Russian patients suffering from intellectual disability, autism, epilepsy and congenital anomalies. In total, phenotypic manifestations of clinically relevant genomic variations were found to result from genomic rearrangements affecting 1247 disease

  6. Combined array CGH plus SNP genome analyses in a single assay for optimized clinical testing.

    Science.gov (United States)

    Wiszniewska, Joanna; Bi, Weimin; Shaw, Chad; Stankiewicz, Pawel; Kang, Sung-Hae L; Pursley, Amber N; Lalani, Seema; Hixson, Patricia; Gambin, Tomasz; Tsai, Chun-hui; Bock, Hans-Georg; Descartes, Maria; Probst, Frank J; Scaglia, Fernando; Beaudet, Arthur L; Lupski, James R; Eng, Christine; Cheung, Sau Wai; Bacino, Carlos; Patel, Ankita

    2014-01-01

    In clinical diagnostics, both array comparative genomic hybridization (array CGH) and single nucleotide polymorphism (SNP) genotyping have proven to be powerful genomic technologies utilized for the evaluation of developmental delay, multiple congenital anomalies, and neuropsychiatric disorders. Differences in the ability to resolve genomic changes between these arrays may constitute an implementation challenge for clinicians: which platform (SNP vs array CGH) might best detect the underlying genetic cause for the disease in the patient? While only SNP arrays enable the detection of copy number neutral regions of absence of heterozygosity (AOH), they have limited ability to detect single-exon copy number variants (CNVs) due to the distribution of SNPs across the genome. To provide comprehensive clinical testing for both CNVs and copy-neutral AOH, we enhanced our custom-designed high-resolution oligonucleotide array that has exon-targeted coverage of 1860 genes with 60,000 SNP probes, referred to as Chromosomal Microarray Analysis - Comprehensive (CMA-COMP). Of the 3240 cases evaluated by this array, clinically significant CNVs were detected in 445 cases including 21 cases with exonic events. In addition, 162 cases (5.0%) showed at least one AOH region >10 Mb. We demonstrate that even though this array has a lower density of SNP probes than other commercially available SNP arrays, it reliably detected AOH events >10 Mb as well as exonic CNVs beyond the detection limitations of SNP genotyping. Thus, combining SNP probes and exon-targeted array CGH into one platform provides clinically useful genetic screening in an efficient manner.

  7. Comparative analysis of copy number detection by whole-genome BAC and oligonucleotide array CGH

    Directory of Open Access Journals (Sweden)

    Bejjani Bassem A

    2010-06-01

    Full Text Available Abstract Background Microarray-based comparative genomic hybridization (aCGH is a powerful diagnostic tool for the detection of DNA copy number gains and losses associated with chromosome abnormalities, many of which are below the resolution of conventional chromosome analysis. It has been presumed that whole-genome oligonucleotide (oligo arrays identify more clinically significant copy-number abnormalities than whole-genome bacterial artificial chromosome (BAC arrays, yet this has not been systematically studied in a clinical diagnostic setting. Results To determine the difference in detection rate between similarly designed BAC and oligo arrays, we developed whole-genome BAC and oligonucleotide microarrays and validated them in a side-by-side comparison of 466 consecutive clinical specimens submitted to our laboratory for aCGH. Of the 466 cases studied, 67 (14.3% had a copy-number imbalance of potential clinical significance detectable by the whole-genome BAC array, and 73 (15.6% had a copy-number imbalance of potential clinical significance detectable by the whole-genome oligo array. However, because both platforms identified copy number variants of unclear clinical significance, we designed a systematic method for the interpretation of copy number alterations and tested an additional 3,443 cases by BAC array and 3,096 cases by oligo array. Of those cases tested on the BAC array, 17.6% were found to have a copy-number abnormality of potential clinical significance, whereas the detection rate increased to 22.5% for the cases tested by oligo array. In addition, we validated the oligo array for detection of mosaicism and found that it could routinely detect mosaicism at levels of 30% and greater. Conclusions Although BAC arrays have faster turnaround times, the increased detection rate of oligo arrays makes them attractive for clinical cytogenetic testing.

  8. Detection of clinically relevant exonic copy-number changes by array CGH.

    Science.gov (United States)

    Boone, Philip M; Bacino, Carlos A; Shaw, Chad A; Eng, Patricia A; Hixson, Patricia M; Pursley, Amber N; Kang, Sung-Hae L; Yang, Yaping; Wiszniewska, Joanna; Nowakowska, Beata A; del Gaudio, Daniela; Xia, Zhilian; Simpson-Patel, Gayle; Immken, LaDonna L; Gibson, James B; Tsai, Anne C-H; Bowers, Jennifer A; Reimschisel, Tyler E; Schaaf, Christian P; Potocki, Lorraine; Scaglia, Fernando; Gambin, Tomasz; Sykulski, Maciej; Bartnik, Magdalena; Derwinska, Katarzyna; Wisniowiecka-Kowalnik, Barbara; Lalani, Seema R; Probst, Frank J; Bi, Weimin; Beaudet, Arthur L; Patel, Ankita; Lupski, James R; Cheung, Sau Wai; Stankiewicz, Pawel

    2010-12-01

    Array comparative genomic hybridization (aCGH) is a powerful tool for the molecular elucidation and diagnosis of disorders resulting from genomic copy-number variation (CNV). However, intragenic deletions or duplications--those including genomic intervals of a size smaller than a gene--have remained beyond the detection limit of most clinical aCGH analyses. Increasing array probe number improves genomic resolution, although higher cost may limit implementation, and enhanced detection of benign CNV can confound clinical interpretation. We designed an array with exonic coverage of selected disease and candidate genes and used it clinically to identify losses or gains throughout the genome involving at least one exon and as small as several hundred base pairs in size. In some patients, the detected copy-number change occurs within a gene known to be causative of the observed clinical phenotype, demonstrating the ability of this array to detect clinically relevant CNVs with subkilobase resolution. In summary, we demonstrate the utility of a custom-designed, exon-targeted oligonucleotide array to detect intragenic copy-number changes in patients with various clinical phenotypes.

  9. Medical applications of array CGH and the transformation of clinical cytogenetics.

    Science.gov (United States)

    Shaffer, L G; Bejjani, B A

    2006-01-01

    Microarray-based comparative genomic hybridization (array CGH) merges molecular diagnostics with traditional chromosome analysis and is transforming the field of cytogenetics. Prospective studies of individuals with developmental delay and dysmorphic features have demonstrated that array CGH has the ability to detect any genomic imbalance including deletions, duplications, aneuploidies and amplifications. Detection rates for chromosome abnormalities with array CGH range from 5-17% in individuals with normal results from prior routine cytogenetic testing. In addition, copy number variants (CNVs) were identified in all studies. These CNVs may include large-scale variation and can confound the diagnostic interpretations. Although cytogeneticists will require additional training and laboratories must become appropriately equipped, array CGH holds the promise of being the initial diagnostic tool in the identification of visible and submicroscopic chromosome abnormalities in mental retardation and other developmental disabilities.

  10. High-resolution SNP array analysis of patients with developmental disorder and normal array CGH results

    Directory of Open Access Journals (Sweden)

    Siggberg Linda

    2012-09-01

    Full Text Available Abstract Background Diagnostic analysis of patients with developmental disorders has improved over recent years largely due to the use of microarray technology. Array methods that facilitate copy number analysis have enabled the diagnosis of up to 20% more patients with previously normal karyotyping results. A substantial number of patients remain undiagnosed, however. Methods and Results Using the Genome-Wide Human SNP array 6.0, we analyzed 35 patients with a developmental disorder of unknown cause and normal array comparative genomic hybridization (array CGH results, in order to characterize previously undefined genomic aberrations. We detected no seemingly pathogenic copy number aberrations. Most of the vast amount of data produced by the array was polymorphic and non-informative. Filtering of this data, based on copy number variant (CNV population frequencies as well as phenotypically relevant genes, enabled pinpointing regions of allelic homozygosity that included candidate genes correlating to the phenotypic features in four patients, but results could not be confirmed. Conclusions In this study, the use of an ultra high-resolution SNP array did not contribute to further diagnose patients with developmental disorders of unknown cause. The statistical power of these results is limited by the small size of the patient cohort, and interpretation of these negative results can only be applied to the patients studied here. We present the results of our study and the recurrence of clustered allelic homozygosity present in this material, as detected by the SNP 6.0 array.

  11. Analysis of Array-CGH Data Using the R and Bioconductor Software Suite

    Directory of Open Access Journals (Sweden)

    Winfried A. Hofmann

    2009-01-01

    Full Text Available Background. Array-based comparative genomic hybridization (array-CGH is an emerging high-resolution and high-throughput molecular genetic technique that allows genome-wide screening for chromosome alterations. DNA copy number alterations (CNAs are a hallmark of somatic mutations in tumor genomes and congenital abnormalities that lead to diseases such as mental retardation. However, accurate identification of amplified or deleted regions requires a sequence of different computational analysis steps of the microarray data. Results. We have developed a user-friendly and versatile tool for the normalization, visualization, breakpoint detection, and comparative analysis of array-CGH data which allows the accurate and sensitive detection of CNAs. Conclusion. The implemented option for the determination of minimal altered regions (MARs from a series of tumor samples is a step forward in the identification of new tumor suppressor genes or oncogenes.

  12. X chromosome array-CGH for the identification of novel X-linked mental retardation genes.

    Science.gov (United States)

    Bauters, Marijke; Van Esch, Hilde; Marynen, Peter; Froyen, Guy

    2005-01-01

    Array-CGH technology for the detection of submicroscopic copy number changes in the genome has recently been developed for the identification of novel disease-associated genes. It has been estimated that submicroscopic genomic deletions or duplications will be present in 5-7% of patients with idiopathic mental retardation (MR). Since 30% more males than females are diagnosed with MR, we have developed a full coverage X chromosome array-CGH with a theoretical resolution of 82 kb, for the detection of copy number alterations in patients with suspected X-linked mental retardation (XLMR). First, we have validated the genomic location of X-derived clones through male versus female hybridisations. Next, we validated our array for efficient and reproducible detection of known alterations in XLMR patients. In all cases, we were able to detect the deletions and duplications in males as well as females. Due to the high resolution of our X-array, the boundaries of the genomic aberrations could clearly be identified making genotype-phenotype studies more reliable. Here, we describe the production and validation of a full coverage X-array-CGH, which will allow for fast and easy screening of submicroscopic copy number alterations in XLMR patients with the aim to identify novel MR genes or mechanisms involved in a deranged cognitive development.

  13. Reliable single cell array CGH for clinical samples.

    Directory of Open Access Journals (Sweden)

    Zbigniew T Czyż

    Full Text Available BACKGROUND: Disseminated cancer cells (DCCs and circulating tumor cells (CTCs are extremely rare, but comprise the precursors cells of distant metastases or therapy resistant cells. The detailed molecular analysis of these cells may help to identify key events of cancer cell dissemination, metastatic colony formation and systemic therapy escape. METHODOLOGY/PRINCIPAL FINDINGS: Using the Ampli1™ whole genome amplification (WGA technology and high-resolution oligonucleotide aCGH microarrays we optimized conditions for the analysis of structural copy number changes. The protocol presented here enables reliable detection of numerical genomic alterations as small as 0.1 Mb in a single cell. Analysis of single cells from well-characterized cell lines and single normal cells confirmed the stringent quantitative nature of the amplification and hybridization protocol. Importantly, fixation and staining procedures used to detect DCCs showed no significant impact on the outcome of the analysis, proving the clinical usability of our method. In a proof-of-principle study we tracked the chromosomal changes of single DCCs over a full course of high-dose chemotherapy treatment by isolating and analyzing DCCs of an individual breast cancer patient at four different time points. CONCLUSIONS/SIGNIFICANCE: The protocol enables detailed genome analysis of DCCs and thereby assessment of the clonal evolution during the natural course of the disease and under selection pressures. The results from an exemplary patient provide evidence that DCCs surviving selective therapeutic conditions may be recruited from a pool of genomically less advanced cells, which display a stable subset of specific genomic alterations.

  14. Insertional translocation detected using FISH confirmation of array-comparative genomic hybridization (aCGH) results.

    Science.gov (United States)

    Kang, Sung-Hae L; Shaw, Chad; Ou, Zhishuo; Eng, Patricia A; Cooper, M Lance; Pursley, Amber N; Sahoo, Trilochan; Bacino, Carlos A; Chinault, A Craig; Stankiewicz, Pawel; Patel, Ankita; Lupski, James R; Cheung, Sau Wai

    2010-05-01

    Insertional translocations (ITs) are rare events that require at least three breaks in the chromosomes involved and thus qualify as complex chromosomal rearrangements (CCR). In the current study, we identified 40 ITs from approximately 18,000 clinical cases (1:500) using array-comparative genomic hybridization (aCGH) in conjunction with fluorescence in situ hybridization (FISH) confirmation of the aCGH findings, and parental follow-up studies. Both submicroscopic and microscopically visible IT events were detected. They were divided into three major categories: (1) simple intrachromosomal and interchromosomal IT resulting in pure segmental trisomy, (2) complex IT involving more than one abnormality, (3) deletion inherited from a parent with a balanced IT resulting in pure segmental monosomy. Of the cases in which follow-up parental studies were available, over half showed inheritance from an apparently unaffected parent carrying the same unbalanced rearrangement detected in the propositi, thus decreasing the likelihood that these IT events are clinically relevant. Nevertheless, we identified six cases in which small submicroscopic events were detected involving known disease-associated genes/genomic segments and are likely to be pathogenic. We recommend that copy number gains detected by clinical aCGH analysis should be confirmed using FISH analysis whenever possible in order to determine the physical location of the duplicated segment. We hypothesize that the increased use of aCGH in the clinic will demonstrate that IT occurs more frequently than previously considered but can identify genomic rearrangements with unclear clinical significance.

  15. Array CGH improves detection of mutations in the GALC gene associated with Krabbe disease

    Directory of Open Access Journals (Sweden)

    Tanner Alice K

    2012-06-01

    Full Text Available Abstract Background Krabbe disease is an autosomal recessive lysosomal storage disorder caused by mutations in the GALC gene. The most common mutation in the Caucasian population is a 30-kb deletion of exons 11 through 17. There are few other reports of intragenic GALC deletions or duplications, due in part to difficulties detecting them. Methods and results We used gene-targeted array comparative genomic hybridization (CGH to analyze the GALC gene in individuals with Krabbe disease in whom sequence analysis with 30-kb deletion analysis identified only one mutation. In our sample of 33 cases, traditional approaches failed to identify two pathogenic mutations in five (15.2% individuals with confirmed Krabbe disease. The addition of array CGH deletion/duplication analysis to the genetic testing strategy led to the identification of a second pathogenic mutation in three (9.1% of these five individuals. In all three cases, the deletion or duplication identified through array CGH was a novel GALC mutation, including the only reported duplication in the GALC gene, which would have been missed by traditional testing methodologies. We report these three cases in detail. The second mutation remains unknown in the remaining two individuals (6.1%, despite our full battery of testing. Conclusions Analysis of the GALC gene using array CGH deletion/duplication testing increased the two-mutation detection rate from 84.8% to 93.9% in affected individuals. Better mutation detection rates are important for improving molecular diagnosis of Krabbe disease, as well as for providing prenatal and carrier testing in family members.

  16. Mulibrey nanism: Two novel mutations in a child identified by Array CGH and DNA sequencing.

    Science.gov (United States)

    Mozzillo, Enza; Cozzolino, Carla; Genesio, Rita; Melis, Daniela; Frisso, Giulia; Orrico, Ada; Lombardo, Barbara; Fattorusso, Valentina; Discepolo, Valentina; Della Casa, Roberto; Simonelli, Francesca; Nitsch, Lucio; Salvatore, Francesco; Franzese, Adriana

    2016-08-01

    In childhood, several rare genetic diseases have overlapping symptoms and signs, including those regarding growth alterations, thus the differential diagnosis is sometimes difficult. The proband, aged 3 years, was suspected to have Silver-Russel syndrome because of intrauterine growth retardation, postnatal growth retardation, typical facial dysmorphic features, macrocephaly, body asymmetry, and bilateral fifth finger clinodactyly. Other features were left atrial and ventricular enlargement and patent foramen ovale. Total X-ray skeleton showed hypoplasia of the twelfth rib bilaterally and of the coccyx, slender long bones with thick cortex, and narrow medullary channels. The genetic investigation did not confirm Silver-Russel syndrome. At the age of 5 the patient developed an additional sign: hepatomegaly. Array CGH revealed a 147 kb deletion (involving TRIM 37 and SKA2 genes) on one allele of chromosome 17, inherited from his mother. These results suggested Mulibrey nanism. The clinical features were found to fit this hypothesis. Sequencing of the TRIM 37 gene showed a single base change at a splicing locus, inherited from his father that provoked a truncated protein. The combined use of Array CGH and DNA sequencing confirmed diagnosis of Mulibrey nanism. The large deletion involving the SKA2 gene, along with the increased frequency of malignant tumours in mulibrey patients, suggests closed monitoring for cancer of our patient and his mother. Array CGH should be performed as first tier test in all infants with multiple anomalies. The clinician should reconsider the clinical features when the genetics suggests this. © 2016 Wiley Periodicals, Inc.

  17. A New Normalizing Algorithm for BAC CGH Arrays with Quality Control Metrics

    Directory of Open Access Journals (Sweden)

    Jeffrey C. Miecznikowski

    2011-01-01

    Full Text Available The main focus in pin-tip (or print-tip microarray analysis is determining which probes, genes, or oligonucleotides are differentially expressed. Specifically in array comparative genomic hybridization (aCGH experiments, researchers search for chromosomal imbalances in the genome. To model this data, scientists apply statistical methods to the structure of the experiment and assume that the data consist of the signal plus random noise. In this paper we propose “SmoothArray”, a new method to preprocess comparative genomic hybridization (CGH bacterial artificial chromosome (BAC arrays and we show the effects on a cancer dataset. As part of our R software package “aCGHplus,” this freely available algorithm removes the variation due to the intensity effects, pin/print-tip, the spatial location on the microarray chip, and the relative location from the well plate. removal of this variation improves the downstream analysis and subsequent inferences made on the data. Further, we present measures to evaluate the quality of the dataset according to the arrayer pins, 384-well plates, plate rows, and plate columns. We compare our method against competing methods using several metrics to measure the biological signal. With this novel normalization algorithm and quality control measures, the user can improve their inferences on datasets and pinpoint problems that may arise in their BAC aCGH technology.

  18. Identification of genome-wide copy number variations among diverse pig breeds by array CGH

    Directory of Open Access Journals (Sweden)

    Li Yan

    2012-12-01

    Full Text Available Abstract Background Recent studies have shown that copy number variation (CNV in mammalian genomes contributes to phenotypic diversity, including health and disease status. In domestic pigs, CNV has been catalogued by several reports, but the extent of CNV and the phenotypic effects are far from clear. The goal of this study was to identify CNV regions (CNVRs in pigs based on array comparative genome hybridization (aCGH. Results Here a custom-made tiling oligo-nucleotide array was used with a median probe spacing of 2506 bp for screening 12 pigs including 3 Chinese native pigs (one Chinese Erhualian, one Tongcheng and one Yangxin pig, 5 European pigs (one Large White, one Pietrain, one White Duroc and two Landrace pigs, 2 synthetic pigs (Chinese new line DIV pigs and 2 crossbred pigs (Landrace × DIV pigs with a Duroc pig as the reference. Two hundred and fifty-nine CNVRs across chromosomes 1–18 and X were identified, with an average size of 65.07 kb and a median size of 98.74 kb, covering 16.85 Mb or 0.74% of the whole genome. Concerning copy number status, 93 (35.91% CNVRs were called as gains, 140 (54.05% were called as losses and the remaining 26 (10.04% were called as both gains and losses. Of all detected CNVRs, 171 (66.02% and 34 (13.13% CNVRs directly overlapped with Sus scrofa duplicated sequences and pig QTLs, respectively. The CNVRs encompassed 372 full length Ensembl transcripts. Two CNVRs identified by aCGH were validated using real-time quantitative PCR (qPCR. Conclusions Using 720 K array CGH (aCGH we described a map of porcine CNVs which facilitated the identification of structural variations for important phenotypes and the assessment of the genetic diversity of pigs.

  19. Methods for high throughput validation of amplified fragment pools of BAC DNA for constructing high resolution CGH arrays

    Directory of Open Access Journals (Sweden)

    Malloff Chad A

    2004-01-01

    Full Text Available Abstract Background The recent development of array based comparative genomic hybridization (CGH technology provides improved resolution for detection of genomic DNA copy number alterations. In array CGH, generating spotting solution is a multi-step process where bacterial artificial chromosome (BAC clones are converted to replenishable PCR amplified fragments pools (AFP for use as spotting solution in a microarray format on glass substrate. With completion of the human and mouse genome sequencing, large BAC clone sets providing complete genome coverage are available for construction of whole genome BAC arrays. Currently, Southern hybridization, fluorescent in-situ hybridization (FISH, and BAC end sequencing methods are commonly used to identify the initial BAC clone but not the end product used for spotting arrays. The AFP sequencing technique described in this study is a novel method designed to verify the identity of array spotting solution in a high throughput manner. Results We show here that Southern hybridization, FISH, and AFP sequencing can be used to verify the identity of final spotting solutions using less than 10% of the AFP product. Single pass AFP sequencing identified over half of the 960 AFPs analyzed. Moreover, using two vector primers approximately 90% of the AFP spotting solutions can be identified. Conclusions In this feasibility study we demonstrate that current methods for identifying initial BAC clones can be adapted to verify the identity of AFP spotting solutions used in printing arrays. Of these methods, AFP sequencing proves to be the most efficient for large scale identification of spotting solution in a high throughput manner.

  20. Use of Virtual Medium in Designing of the CGH Wave Front Generator for Aspheric Testing

    Institute of Scientific and Technical Information of China (English)

    KANG Guo-guo; XIE Jing-hui; LIU Yi

    2007-01-01

    Design method and procedures of computer-generated hologram (CGH) used for aspheric test are introduced in detail.For CGH phase calculation,virtual medium which has zero refractive index at given wavelength is used to model ideal aspheric wavefront.Reflective Fresnel zones located in a ring area concentric to the CGH structure is designed to reduce or eliminate alignment errors.Substrate figure error,pattern distortion,etching and duty cycle variations that influence the reconstructed wavefront are quantitatively analyzed in theory and corresponding error equations are obtained to guide the tolerance distribution during CGH fabricating.A design example is given and the uncertainty of measurement achieves λ/20.

  1. Supernumerary marker chromosomes derived from chromosome 6: cytogenetic, molecular cytogenetic, and array CGH characterization.

    Science.gov (United States)

    Huang, Bing; Pearle, Phyllis; Rauen, Katherine A; Cotter, Philip D

    2012-07-01

    Supernumerary marker chromosomes (SMC) are relatively common in prenatal diagnosis. As the clinical outcomes vary greatly, a better understanding of the karyotype-phenotype correlation for different SMCs will be important for genetic counseling. We present two cases of prenatally detected de novo, small SMCs. The markers were present in 80% of amniocyte colonies in Case 1 and 38% of the colonies in Case 2. The SMCs were determined to be derived from chromosome 6 during postnatal confirmation studies. Although the sizes and the chromosomal origin of the SMCs in these two cases appeared to be similar, the clinical outcomes varied. The clinical manifestations observed in Case 1 included small for gestational age, feeding difficulty at birth, hydronephrosis, deviated septum and dysmorphic features, while the phenotype is apparently normal in Case 2. Array comparative genomic hybridization (CGH) was performed and showed increase in dosage for approximately 26 Mb of genetic material from the proximal short and long arms of chromosome 6 in Case 1. Results of array CGH were uninformative in Case 2, either due to mosaicism or lack of detectable euchromatin. The difference in the clinical presentation in these two patients may have resulted from the difference in the actual gene contents of the marker chromosomes and/or the differential distribution of the mosaicism.

  2. De novo complex intra chromosomal rearrangement after ICSI: characterisation by BACs micro array-CGH

    Science.gov (United States)

    Kasakyan, Serdar; Lohmann, Laurence; Aboura, Azeddine; Quimsiyeh, Mazin; Menezo, Yves; Tachdjian, Gerard; Benkhalifa, Moncef

    2008-01-01

    Background In routine Assisted Reproductive Technology (ART) men with severe oligozoospermia or azoospermia should be informed about the risk of de novo congenital or chromosomal abnormalities in ICSI program. Also the benefits of preimplantation or prenatal genetic diagnosis practice need to be explained to the couple. Methods From a routine ICSI attempt, using ejaculated sperm from male with severe oligozoospermia and having normal karyotype, a 30 years old pregnant woman was referred to prenatal diagnosis in the 17th week for bichorionic biamniotic twin gestation. Amniocentesis was performed because of the detection of an increased foetal nuchal translucency for one of the fetus by the sonographic examination during the 12th week of gestation (WG). Chromosome and DNA studies of the fetus were realized on cultured amniocytes Results Conventional, molecular cytogenetic and microarray CGH experiments allowed us to conclude that the fetus had a de novo pericentromeric inversion associated with a duplication of the 9p22.1-p24 chromosomal region, 46,XY,invdup(9)(p22.1p24) [arrCGH 9p22.1p24 (RP11-130C19 → RP11-87O1)x3]. As containing the critical 9p22 region, our case is in coincidence with the general phenotype features of the partial trisomy 9p syndrome with major growth retardation, microcephaly and microretrognathia. Conclusion This de novo complex chromosome rearrangement illustrates the possible risk of chromosome or gene defects in ICSI program and the contribution of array-CGH for mapping rapidly de novo chromosomal imbalance. PMID:19105807

  3. Multiple Break-Points Detection in Array CGH Data via the Cross-Entropy Method.

    Science.gov (United States)

    Priyadarshana, W J R M; Sofronov, Georgy

    2015-01-01

    Array comparative genome hybridization (aCGH) is a widely used methodology to detect copy number variations of a genome in high resolution. Knowing the number of break-points and their corresponding locations in genomic sequences serves different biological needs. Primarily, it helps to identify disease-causing genes that have functional importance in characterizing genome wide diseases. For human autosomes the normal copy number is two, whereas at the sites of oncogenes it increases (gain of DNA) and at the tumour suppressor genes it decreases (loss of DNA). The majority of the current detection methods are deterministic in their set-up and use dynamic programming or different smoothing techniques to obtain the estimates of copy number variations. These approaches limit the search space of the problem due to different assumptions considered in the methods and do not represent the true nature of the uncertainty associated with the unknown break-points in genomic sequences. We propose the Cross-Entropy method, which is a model-based stochastic optimization technique as an exact search method, to estimate both the number and locations of the break-points in aCGH data. We model the continuous scale log-ratio data obtained by the aCGH technique as a multiple break-point problem. The proposed methodology is compared with well established publicly available methods using both artificially generated data and real data. Results show that the proposed procedure is an effective way of estimating number and especially the locations of break-points with high level of precision. Availability: The methods described in this article are implemented in the new R package breakpoint and it is available from the Comprehensive R Archive Network at http://CRAN.R-project.org/package=breakpoint.

  4. De novo complex intra chromosomal rearrangement after ICSI: characterisation by BACs micro array-CGH

    Directory of Open Access Journals (Sweden)

    Quimsiyeh Mazin

    2008-12-01

    Full Text Available Abstract Background In routine Assisted Reproductive Technology (ART men with severe oligozoospermia or azoospermia should be informed about the risk of de novo congenital or chromosomal abnormalities in ICSI program. Also the benefits of preimplantation or prenatal genetic diagnosis practice need to be explained to the couple. Methods From a routine ICSI attempt, using ejaculated sperm from male with severe oligozoospermia and having normal karyotype, a 30 years old pregnant woman was referred to prenatal diagnosis in the 17th week for bichorionic biamniotic twin gestation. Amniocentesis was performed because of the detection of an increased foetal nuchal translucency for one of the fetus by the sonographic examination during the 12th week of gestation (WG. Chromosome and DNA studies of the fetus were realized on cultured amniocytes Results Conventional, molecular cytogenetic and microarray CGH experiments allowed us to conclude that the fetus had a de novo pericentromeric inversion associated with a duplication of the 9p22.1-p24 chromosomal region, 46,XY,invdup(9(p22.1p24 [arrCGH 9p22.1p24 (RP11-130C19 → RP11-87O1x3]. As containing the critical 9p22 region, our case is in coincidence with the general phenotype features of the partial trisomy 9p syndrome with major growth retardation, microcephaly and microretrognathia. Conclusion This de novo complex chromosome rearrangement illustrates the possible risk of chromosome or gene defects in ICSI program and the contribution of array-CGH for mapping rapidly de novo chromosomal imbalance.

  5. Design and fabrication of CGH for 600mm diameter SiC primary mirror surface figure testing

    Science.gov (United States)

    Pang, Zhihai; Ma, Zhen; Fan, Xuewu; Zou, Gangyi

    2016-09-01

    Computer-generated hologram (CGH) is an effective way to compensate wavefront aberration in null test of aspheric surfaces and freeform surfaces. Our strategies of CGH design for 600mm diameter SiC primary mirror surface figure testing are presented, and an experiment demonstrating the compensation test results of CGH is reported. We design a CGH including two sections on the same substrate in order to align the CGH to the incident wavefront: main section for compensating wavefront in null test, alignment section for adjusting the relative position between CGH and interferometer. In order to isolate different orders of diffraction, we used power carrier to make different orders of diffraction come to focus at different position along the axis to avoid ghost reflections. We measured the 600mm diameter SiC primary mirror using this CGH, and the surface test result is 0.033λ rms.

  6. The development of a mini-array for estimating the disease state of gastric adenocarcinoma by array CGH

    Directory of Open Access Journals (Sweden)

    Oga Atsunori

    2008-12-01

    Full Text Available Abstract Background The treatment strategy usually depends on the disease state in the individual patient. However, it is difficult to estimate the disease state before treatment in many patients. The purpose of this study was to develop a BAC (bacterial artificial chromosome mini-array allowing for the estimation of node metastasis, liver metastasis, peritoneal dissemination and the depth of tumor invasion in gastric cancers. Methods Initially, the DNA copy number aberrations (DCNAs were analyzed by array-based comparative genomic hybridization (aCGH in 83 gastric adenocarcinomas as a training-sample set. Next, two independent analytical methods were applied to the aCGH data to identify the BAC clones with DNA copy number aberrations that were linked with the disease states. One of the methods, a decision-tree model classifier, identified 6, 4, 4, 4, and 7 clones for estimating lymph node metastasis, liver metastasis, peritoneal dissemination, depth of tumor invasion, and histological type, respectively. In the other method, a clone-by-clone comparison of the frequency of the DNA copy number aberrations selected 26 clones to estimate the disease states. Results By spotting these 50 clones together with 26 frequently or rarely involved clones and 62 reference clones, a mini-array was made to estimate the above parameters, and the diagnostic performance of the mini-array was evaluated for an independent set of 30 gastric cancers (blinded – sample set. In comparison to the clinicopathological features, the overall accuracy was 66.7% for node metastasis, 86.7% for liver metastasis, 86.7% for peritoneal dissemination, and 96.7% for depth of tumor invasion. The intratumoral heterogeneity barely affected the diagnostic performance of the mini-array. Conclusion These results suggest that the mini-array makes it possible to determine an optimal treatment for each of the patients with gastric adenocarcinoma.

  7. Parsimonious higher-order hidden Markov models for improved array-CGH analysis with applications to Arabidopsis thaliana.

    Directory of Open Access Journals (Sweden)

    Michael Seifert

    2012-01-01

    Full Text Available Array-based comparative genomic hybridization (Array-CGH is an important technology in molecular biology for the detection of DNA copy number polymorphisms between closely related genomes. Hidden Markov Models (HMMs are popular tools for the analysis of Array-CGH data, but current methods are only based on first-order HMMs having constrained abilities to model spatial dependencies between measurements of closely adjacent chromosomal regions. Here, we develop parsimonious higher-order HMMs enabling the interpolation between a mixture model ignoring spatial dependencies and a higher-order HMM exhaustively modeling spatial dependencies. We apply parsimonious higher-order HMMs to the analysis of Array-CGH data of the accessions C24 and Col-0 of the model plant Arabidopsis thaliana. We compare these models against first-order HMMs and other existing methods using a reference of known deletions and sequence deviations. We find that parsimonious higher-order HMMs clearly improve the identification of these polymorphisms. Moreover, we perform a functional analysis of identified polymorphisms revealing novel details of genomic differences between C24 and Col-0. Additional model evaluations are done on widely considered Array-CGH data of human cell lines indicating that parsimonious HMMs are also well-suited for the analysis of non-plant specific data. All these results indicate that parsimonious higher-order HMMs are useful for Array-CGH analyses. An implementation of parsimonious higher-order HMMs is available as part of the open source Java library Jstacs (www.jstacs.de/index.php/PHHMM.

  8. Parsimonious higher-order hidden Markov models for improved array-CGH analysis with applications to Arabidopsis thaliana.

    Science.gov (United States)

    Seifert, Michael; Gohr, André; Strickert, Marc; Grosse, Ivo

    2012-01-01

    Array-based comparative genomic hybridization (Array-CGH) is an important technology in molecular biology for the detection of DNA copy number polymorphisms between closely related genomes. Hidden Markov Models (HMMs) are popular tools for the analysis of Array-CGH data, but current methods are only based on first-order HMMs having constrained abilities to model spatial dependencies between measurements of closely adjacent chromosomal regions. Here, we develop parsimonious higher-order HMMs enabling the interpolation between a mixture model ignoring spatial dependencies and a higher-order HMM exhaustively modeling spatial dependencies. We apply parsimonious higher-order HMMs to the analysis of Array-CGH data of the accessions C24 and Col-0 of the model plant Arabidopsis thaliana. We compare these models against first-order HMMs and other existing methods using a reference of known deletions and sequence deviations. We find that parsimonious higher-order HMMs clearly improve the identification of these polymorphisms. Moreover, we perform a functional analysis of identified polymorphisms revealing novel details of genomic differences between C24 and Col-0. Additional model evaluations are done on widely considered Array-CGH data of human cell lines indicating that parsimonious HMMs are also well-suited for the analysis of non-plant specific data. All these results indicate that parsimonious higher-order HMMs are useful for Array-CGH analyses. An implementation of parsimonious higher-order HMMs is available as part of the open source Java library Jstacs (www.jstacs.de/index.php/PHHMM).

  9. Clinical applications of BAC array-CGH to the study of diffuse large B-cell lymphomas.

    Science.gov (United States)

    Robledo, Cristina; García, Juan Luis; Hernández, Jesús M

    2013-01-01

    BAC array-CGH is a powerful method to identify DNA copy number changes (gains, amplifications and deletions) on a genome-wide scale, and to map these changes to genomic sequence. It is based on the analysis of genomic DNA isolated from test and reference cell populations, the differential labelling with fluorescent dyes and the co-hybridization with a genomic array. BAC array-CGH has proven to be a specific, sensitive, and reliable technique, with considerable advantages compared to other methods used for the analysis of DNA copy number changes. The application of genome scanning technologies and the recent advances in bioinformatics tools that enable us to perform a robust and highly sensitive analysis of array-CGH data, useful not only for genome scanning of tumor cells but also in the identification of novel cancer related genes, oncogenes and suppressor genes. Cytogenetic analysis provides essential information for diagnosis and prognosis in patients with hematologic malignancies such as lymphomas. However, the chromosomal interpretation in non-Hodgkin lymphoma (NHL) is sometimes inconclusive. Copy number aberrations identified by BAC array-CGH analyses could be a complementary methodology to chromosomal analysis. In NHL the genomic imbalances might have a prognostic rather than a diagnostic value. In fact, the diagnosis of NHL is based on pathological and molecular cytogenetics data. Furthermore genetic variations and their association with specific types of lymphoma development, and elucidation of the variable genetic pathways leading to lymphoma development, are important directions for future cancer research. Array-CGH, along with FISH and PCR, will be used for routine diagnostic purposes in near future.

  10. CGHregions: Dimension Reduction for Array CGH Data with Minimal Information Loss

    Directory of Open Access Journals (Sweden)

    Mark A. van de Wiel

    2007-01-01

    Full Text Available An algorithm to reduce multi-sample array CGH data from thousands of clones to tens or hundreds of clone regions is introduced. This reduction of the data is performed such that little information is lost, which is possible due to the high dependencies between neighboring clones. The algorithm is explained using a small example. The potential beneficial effects of the algorithm for downstream analysis are illustrated by re-analysis of previously published colorectal cancer data. Using multiple testing corrections suitable for these data, we provide statistical evidence for genomic differences on several clone regions between MSI+ and CIN+ tumors. The algorithm, named CGHregions, is available as an easy-to-use script in R.

  11. CGH and SNP array using DNA extracted from fixed cytogenetic preparations and long-term refrigerated bone marrow specimens

    Directory of Open Access Journals (Sweden)

    MacKinnon Ruth N

    2012-02-01

    Full Text Available Abstract Background The analysis of nucleic acids is limited by the availability of archival specimens and the quality and amount of the extracted material. Archived cytogenetic preparations are stored in many laboratories and are a potential source of total genomic DNA for array karyotyping and other applications. Array CGH using DNA from fixed cytogenetic preparations has been described, but it is not known whether it can be used for SNP arrays. Diagnostic bone marrow specimens taken during the assessment of hematological malignancies are also a potential source of DNA, but it is generally assumed that DNA must be extracted, or the specimen frozen, within a day or two of collection, to obtain DNA suitable for further analysis. We have assessed DNA extracted from these materials for both SNP array and array CGH. Results We show that both SNP array and array CGH can be performed on genomic DNA extracted from cytogenetic specimens stored in Carnoy's fixative, and from bone marrow which has been stored unfrozen, at 4°C, for at least 36 days. We describe a procedure for extracting a usable concentration of total genomic DNA from cytogenetic suspensions of low cellularity. Conclusions The ability to use these archival specimens for DNA-based analysis increases the potential for retrospective genetic analysis of clinical specimens. Fixed cytogenetic preparations and long-term refrigerated bone marrow both provide DNA suitable for array karyotyping, and may be suitable for a wider range of analytical procedures.

  12. Implementation of High Resolution Whole Genome Array CGH in the Prenatal Clinical Setting: Advantages, Challenges, and Review of the Literature

    Directory of Open Access Journals (Sweden)

    Paola Evangelidou

    2013-01-01

    Full Text Available Array Comparative Genomic Hybridization analysis is replacing postnatal chromosomal analysis in cases of intellectual disabilities, and it has been postulated that it might also become the first-tier test in prenatal diagnosis. In this study, array CGH was applied in 64 prenatal samples with whole genome oligonucleotide arrays (BlueGnome, Ltd. on DNA extracted from chorionic villi, amniotic fluid, foetal blood, and skin samples. Results were confirmed with Fluorescence In Situ Hybridization or Real-Time PCR. Fifty-three cases had normal karyotype and abnormal ultrasound findings, and seven samples had balanced rearrangements, five of which also had ultrasound findings. The value of array CGH in the characterization of previously known aberrations in five samples is also presented. Seventeen out of 64 samples carried copy number alterations giving a detection rate of 26.5%. Ten of these represent benign or variables of unknown significance, giving a diagnostic capacity of the method to be 10.9%. If karyotype is performed the additional diagnostic capacity of the method is 5.1% (3/59. This study indicates the ability of array CGH to identify chromosomal abnormalities which cannot be detected during routine prenatal cytogenetic analysis, therefore increasing the overall detection rate. In addition a thorough review of the literature is presented.

  13. DNA copy number changes in high-grade malignant peripheral nerve sheath tumors by array CGH

    Directory of Open Access Journals (Sweden)

    Bjerkehagen Bodil

    2008-06-01

    Full Text Available Abstract Background Malignant peripheral nerve sheath tumors (MPNSTs are rare and highly aggressive soft tissue tumors showing complex chromosomal aberrations. In order to identify recurrent chromosomal regions of gain and loss, and thereby novel gene targets of potential importance for MPNST development and/or progression, we have analyzed DNA copy number changes in seven high-grade MPNSTs using microarray-based comparative genomic hybridization (array CGH. Results Considerable more gains than losses were observed, and the most frequent minimal recurrent regions of gain included 1q24.1-q24.2, 1q24.3-q25.1, 8p23.1-p12, 9q34.11-q34.13 and 17q23.2-q25.3, all gained in five of seven samples. The 17q23.2-q25.3 region was gained in all five patients with poor outcome and not in the two patients with disease-free survival. cDNA microarray analysis and quantitative real-time reverse transcription PCR were used to investigate expression of genes located within these regions. The gene lysyl oxidase-like 2 (LOXL2 was identified as a candidate target for the 8p23.1-p12 gain. Within 17q, the genes topoisomerase II-α (TOP2A, ets variant gene 4 (E1A enhancer binding protein, E1AF (ETV4 and baculoviral IAP repeat-containing 5 (survivin (BIRC5 showed increased expression in all samples compared to two benign tumors. Increased expression of these genes has previously been associated with poor survival in other malignancies, and for TOP2A, in MPNSTs as well. In addition, we have analyzed the expression of five micro RNAs located within the 17q23.2-q25.3 region, but none of them showed high expression levels compared to the benign tumors. Conclusion Our study shows the potential of using DNA copy number changes obtained by array CGH to predict the prognosis of MPNST patients. Although no clear correlations between the expression level and patient outcome were observed, the genes TOP2A, ETV4 and BIRC5 are interesting candidate targets for the 17q gain associated

  14. Aneuploidy analysis of non-pronuclear embryos from IVF with use of array CGH: a case report.

    Science.gov (United States)

    Lixin, Deng; Zhifeng, Xiang; Cong, He; Jinzhou, Zhang; Hongbin, Xie

    2014-06-01

    By using array comparative genomic hybridization (array CGH), to analyze the aneuploidy of the single blastomeres from non-pronuclear embryos on cleavage-stage in IVF cycle. Four non-pronuclear embryos were got from an IVF cycle, and the each single cell was biopsied from the four cleavage-stage embryos on the third day after the insemination which was investigated by using array CGH. After the biopsy, all the embryos continued to cleave, and lately entered the morula stage on the fifth day, just one embryo 3 was developed to early blastocyst stage on the sixth day. The four blastomere 24 chromosomes showed one X monomer and three normal XY diploids; the autosome chromosomes of blastomeres were abnormally gained or lost at different chromosome from four embryos, such as Embryo 1 : 49,X (-1, -5, -11, -19, -20, -21, -Y, +3, +6, +7, +8, +10, +13, +14, +16, +17, +18); Embryo 2 : 44,XY (-12, -15); Embryo 3: 47,XY (-3, -8, -9, -21, +7, +17, +18, +19, +20); Embryo 4 : 54,XY (+4, +7, +10, +12, +13, +16, +17, +22). With the use of the array CGH, the aneuploidy analysis could review the abnormal chromosomes of single blastomere from the non-pronuclear embryos, which can harbor the risk of abnormal sex chromosome and autosome chromosomes.

  15. High-resolution copy number profiling by array CGH using DNA isolated from formalin-fixed, paraffin-embedded tissues.

    Science.gov (United States)

    van Essen, Hendrik F; Ylstra, Bauke

    2012-01-01

    We describe protocols to acquire high-quality DNA from formalin-fixed, paraffin-embedded (FFPE) tissues for the use in array comparative genome hybridization (CGH). Formalin fixation combined with paraffin embedding is routine procedure for solid malignancies in the diagnostic practice of the pathologist. As a consequence, large archives of FFPE tissues are available in pathology institutes across the globe. This archival material is for many research questions an invaluable resource, with long-term clinical follow-up and survival data available. FFPE is, thus, highly attractive for large genomics studies, including experiments requiring samples for test/learning and validation. Most larger array CGH studies have, therefore, made use of FFPE material and show that CNAs have tumor- and tissue-specific traits (Chin et al. Cancer Cell 10: 529-541, 2006; Fridlyand et al. BMC Cancer 6: 96, 2006; Weiss et al. Oncogene 22: 1872-1879, 2003; Jong et al. Oncogene 26: 1499-1506, 2007). The protocols described are tailored to array CGH of FFPE solid malignancies: from sectioning FFPE blocks to specific cynosures for pathological revisions of sections, DNA isolation, quality testing, and amplification. The protocols are technical in character and elaborate up to the labeling of isolated DNA while further processes and interpretation and data analysis are beyond the scope.

  16. Discovery of common Asian copy number variants using integrated high-resolution array CGH and massively parallel DNA sequencing.

    Science.gov (United States)

    Park, Hansoo; Kim, Jong-Il; Ju, Young Seok; Gokcumen, Omer; Mills, Ryan E; Kim, Sheehyun; Lee, Seungbok; Suh, Dongwhan; Hong, Dongwan; Kang, Hyunseok Peter; Yoo, Yun Joo; Shin, Jong-Yeon; Kim, Hyun-Jin; Yavartanoo, Maryam; Chang, Young Wha; Ha, Jung-Sook; Chong, Wilson; Hwang, Ga-Ram; Darvishi, Katayoon; Kim, Hyeran; Yang, Song Ju; Yang, Kap-Seok; Kim, Hyungtae; Hurles, Matthew E; Scherer, Stephen W; Carter, Nigel P; Tyler-Smith, Chris; Lee, Charles; Seo, Jeong-Sun

    2010-05-01

    Copy number variants (CNVs) account for the majority of human genomic diversity in terms of base coverage. Here, we have developed and applied a new method to combine high-resolution array comparative genomic hybridization (CGH) data with whole-genome DNA sequencing data to obtain a comprehensive catalog of common CNVs in Asian individuals. The genomes of 30 individuals from three Asian populations (Korean, Chinese and Japanese) were interrogated with an ultra-high-resolution array CGH platform containing 24 million probes. Whole-genome sequencing data from a reference genome (NA10851, with 28.3x coverage) and two Asian genomes (AK1, with 27.8x coverage and AK2, with 32.0x coverage) were used to transform the relative copy number information obtained from array CGH experiments into absolute copy number values. We discovered 5,177 CNVs, of which 3,547 were putative Asian-specific CNVs. These common CNVs in Asian populations will be a useful resource for subsequent genetic studies in these populations, and the new method of calling absolute CNVs will be essential for applying CNV data to personalized medicine.

  17. Formalin-fixed paraffin-embedded clinical tissues show spurious copy number changes in array-CGH profiles.

    Science.gov (United States)

    Mc Sherry, E A; Mc Goldrick, A; Kay, E W; Hopkins, A M; Gallagher, W M; Dervan, P A

    2007-11-01

    Formalin-fixed paraffin-embedded (FFPE) archival clinical specimens are invaluable in discovery of prognostic and therapeutic targets for diseases such as cancer. However, the suitability of FFPE-derived genetic material for array-based comparative genomic hybridization (array-CGH) studies is underexplored. In this study, genetic profiles of matched FFPE and fresh-frozen specimens were examined to investigate DNA integrity differences between these sample types and determine the impact this may have on genetic profiles. Genomic DNA was extracted from three patient-matched FFPE and fresh-frozen clinical tissue samples. T47D breast cancer control cells were also grown in culture and processed to yield a fresh T47D sample, a fresh-frozen T47D sample and a FFPE T47D sample. DNA was extracted from all the samples; array-CGH conducted and genetic profiles of matched samples were then compared. A loss of high molecular weight DNA was observed in the FFPE clinical tissues and FFPE T47D samples. A dramatic increase in absolute number of genetic alterations was observed in all FFPE tissues relative to matched fresh-frozen counterparts. In future, alternative fixation and tissue-processing procedures, and/or new DNA extraction and CGH profiling protocols, may be implemented, enabling identification of changes involved in disease progression using stored clinical specimens.

  18. Enhancing genome-wide copy number variation identification by high density array CGH using diverse resources of pig breeds.

    Directory of Open Access Journals (Sweden)

    Jiying Wang

    Full Text Available Copy number variations (CNVs are important forms of genomic variation, and have attracted extensive attentions in humans as well as domestic animals. In the study, using a custom-designed 2.1 M array comparative genomic hybridization (aCGH, genome-wide CNVs were identified among 12 individuals from diverse pig breeds, including one Asian wild population, six Chinese indigenous breeds and two modern commercial breeds (Yorkshire and Landrace, with one individual of the other modern commercial breed, Duroc, as the reference. A total of 1,344 CNV regions (CNVRs were identified, covering 47.79 Mb (∼1.70% of the pig genome. The length of these CNVRs ranged from 3.37 Kb to 1,319.0 Kb with a mean of 35.56 Kb and a median of 11.11 Kb. Compared with similar studies reported, most of the CNVRs (74.18% were firstly identified in present study. In order to confirm these CNVRs, 21 CNVRs were randomly chosen to be validated by quantitative real time PCR (qPCR and a high rate (85.71% of confirmation was obtained. Functional annotation of CNVRs suggested that the identified CNVRs have important function, and may play an important role in phenotypic and production traits difference among various breeds. Our results are essential complementary to the CNV map in the pig genome, which will provide abundant genetic markers to investigate association studies between various phenotypes and CNVs in pigs.

  19. Genome-Wide Screening of Cytogenetic Abnormalities in Multiple Myeloma Patients Using Array-CGH Technique: A Czech Multicenter Experience

    Directory of Open Access Journals (Sweden)

    Jan Smetana

    2014-01-01

    Full Text Available Characteristic recurrent copy number aberrations (CNAs play a key role in multiple myeloma (MM pathogenesis and have important prognostic significance for MM patients. Array-based comparative genomic hybridization (aCGH provides a powerful tool for genome-wide classification of CNAs and thus should be implemented into MM routine diagnostics. We demonstrate the possibility of effective utilization of oligonucleotide-based aCGH in 91 MM patients. Chromosomal aberrations associated with effect on the prognosis of MM were initially evaluated by I-FISH and were found in 93.4% (85/91. Incidence of hyperdiploidy was 49.5% (45/91; del(13(q14 was detected in 57.1% (52/91; gain(1(q21 occurred in 58.2% (53/91; del(17(p13 was observed in 15.4% (14/91; and t(4;14(p16;q32 was found in 18.6% (16/86. Genome-wide screening using Agilent 44K aCGH microarrays revealed copy number alterations in 100% (91/91. Most common deletions were found at 13q (58.9%, 1p (39.6%, and 8p (31.1%, whereas gain of whole 1q was the most often duplicated region (50.6%. Furthermore, frequent homozygous deletions of genes playing important role in myeloma biology such as TRAF3, BIRC1/BIRC2, RB1, or CDKN2C were observed. Taken together, we demonstrated the utilization of aCGH technique in clinical diagnostics as powerful tool for identification of unbalanced genomic abnormalities with prognostic significance for MM patients.

  20. [Accidental finding of a cri du chat syndrome in an adult patient by means of array-CGH].

    Science.gov (United States)

    Ferreirós-Martínez, Raquel; López-Manzanares, Lydia; Alonso-Cerezo, Concepción

    2014-07-16

    Introduccion. El sindrome cri du chat (SCDC) tiene su origen en una delecion parcial o total del brazo corto del cromosoma 5, y es uno de los sindromes de delecion cromosomica mas frecuentes en humanos. La mayoria de los pacientes se diagnostica entre el primer mes y el primer año de vida, si bien aqui se describe el hallazgo de un SCDC en una mujer con sospecha de ataxia espinocerebelar y antecedentes familiares de trastorno bipolar y ataxia, con especial atencion a las caracteristicas clinicas y las tecnicas diagnosticas que permitieron su identificacion. Caso clinico. Mujer de 46 años que presentaba una inteligencia limite, intervenida a los 43 años de faquectomia bilateral. El inicio de la sintomatologia fue durante la infancia, e incluia hipoacusia, ataxia, disartria, disfagia, depresion, deterioro cognitivo y trastorno bipolar. La exploracion fisica revelo microcefalia, micrognatia, pies equinos y ataxia. Se realizo cariotipo y array-CGH en sangre periferica. La paciente presentaba una traslocacion que involucraba los cromosomas 5 y 15, y una inversion del cromosoma 9: 45,XX,inv9(p11q13);t(5,15)(p15.33;q11.2). El array-CGH mostro una delecion de 2,91 Mb en 5p15.33, formula genomica arr 5p15.33 (151537-3057771)x1, que involucraba 20 genes, incluyendo el gen TERT. Conclusiones. La delecion de multiples genes confirmo el diagnostico de SCDC y es la responsable del fenotipo de la paciente. Se pone de manifiesto la importancia de utilizar tecnicas adecuadas de diagnostico (array-CGH, cariotipo en sangre periferica) y la correcta eleccion de estas.

  1. Characterization of genomic alterations in radiation-associated breast cancer among childhood cancer survivors, using comparative genomic hybridization (CGH arrays.

    Directory of Open Access Journals (Sweden)

    Xiaohong R Yang

    Full Text Available Ionizing radiation is an established risk factor for breast cancer. Epidemiologic studies of radiation-exposed cohorts have been primarily descriptive; molecular events responsible for the development of radiation-associated breast cancer have not been elucidated. In this study, we used array comparative genomic hybridization (array-CGH to characterize genome-wide copy number changes in breast tumors collected in the Childhood Cancer Survivor Study (CCSS. Array-CGH data were obtained from 32 cases who developed a second primary breast cancer following chest irradiation at early ages for the treatment of their first cancers, mostly Hodgkin lymphoma. The majority of these cases developed breast cancer before age 45 (91%, n = 29, had invasive ductal tumors (81%, n = 26, estrogen receptor (ER-positive staining (68%, n = 19 out of 28, and high proliferation as indicated by high Ki-67 staining (77%, n = 17 out of 22. Genomic regions with low-copy number gains and losses and high-level amplifications were similar to what has been reported in sporadic breast tumors, however, the frequency of amplifications of the 17q12 region containing human epidermal growth factor receptor 2 (HER2 was much higher among CCSS cases (38%, n = 12. Our findings suggest that second primary breast cancers in CCSS were enriched for an "amplifier" genomic subgroup with highly proliferative breast tumors. Future investigation in a larger irradiated cohort will be needed to confirm our findings.

  2. BAC CGH-array identified specific small-scale genomic imbalances in diploid DMBA-induced rat mammary tumors

    Directory of Open Access Journals (Sweden)

    Samuelson Emma

    2012-08-01

    Full Text Available Abstract Background Development of breast cancer is a multistage process influenced by hormonal and environmental factors as well as by genetic background. The search for genes underlying this malignancy has recently been highly productive, but the etiology behind this complex disease is still not understood. In studies using animal cancer models, heterogeneity of the genetic background and environmental factors is reduced and thus analysis and identification of genetic aberrations in tumors may become easier. To identify chromosomal regions potentially involved in the initiation and progression of mammary cancer, in the present work we subjected a subset of experimental mammary tumors to cytogenetic and molecular genetic analysis. Methods Mammary tumors were induced with DMBA (7,12-dimethylbenz[a]anthrazene in female rats from the susceptible SPRD-Cu3 strain and from crosses and backcrosses between this strain and the resistant WKY strain. We first produced a general overview of chromosomal aberrations in the tumors using conventional kartyotyping (G-banding and Comparative Genome Hybridization (CGH analyses. Particular chromosomal changes were then analyzed in more details using an in-house developed BAC (bacterial artificial chromosome CGH-array platform. Results Tumors appeared to be diploid by conventional karyotyping, however several sub-microscopic chromosome gains or losses in the tumor material were identified by BAC CGH-array analysis. An oncogenetic tree analysis based on the BAC CGH-array data suggested gain of rat chromosome (RNO band 12q11, loss of RNO5q32 or RNO6q21 as the earliest events in the development of these mammary tumors. Conclusions Some of the identified changes appear to be more specific for DMBA-induced mammary tumors and some are similar to those previously reported in ACI rat model for estradiol-induced mammary tumors. The later group of changes is more interesting, since they may represent anomalies that involve

  3. Genetic characterization of dogs via chromosomal analysis and array-based comparative genomic hybridization (aCGH).

    Science.gov (United States)

    Müller, M H; Reimann-Berg, N; Bullerdiek, J; Murua Escobar, H

    2012-01-01

    The results of cytogenetic and molecular cytogenetic investigations revealed similarities in genetic background and biological behaviour between tumours and genetic diseases of humans and dogs. These findings classify the dog a good and accepted model for human cancers such as osteosarcomas, mammary carcinomas, oral melanomas and others. With the appearance of new studies and advances in canine genome sequencing, the number of known homologies in diseases between these species raised and still is expected to increase. In this context, array-based comparative genomic hybridization (aCGH) provides a novel tool to rapidly characterize numerical aberrations in canine tumours or to detect copy number aberrations between different breeds. As it is possible to spot probes covering the whole genome on each chip to discover copy number aberrations of all chromosomes simultaneously, this method is time-saving and cost-effective - considering the relation of costs and the amount of data obtained. Complemented with traditional methods like karyotyping and fluorescence in situ hybridization (FISH) analyses, the aCGH is able to provide new insights into the underlying causes of canine carcinogenesis.

  4. Array CGH on unstimulated blood does not detect all cases of Pallister-Killian syndrome: a skin biopsy should remain the diagnostic gold standard.

    Science.gov (United States)

    Hodge, Jennelle C; Hulshizer, Rachael L; Seger, Pam; St Antoine, Angelique; Bair, Jennifer; Kirmani, Salman

    2012-03-01

    A child whose features are consistent with Pallister-Killian syndrome (PKS) did not have detectable tetrasomy 12p due to an additional isochromosome 12p in an unstimulated blood specimen by interphase FISH or array CGH analysis. The diagnosis of PKS was made through these methods solely in a skin biopsy specimen. To determine the sensitivity of our array CGH platform to tetrasomy 12p mosaicism, dilutions of DNA from both the child's skin fibroblasts and a PKS cell line were analyzed. Tetrasomy 12p at 10% mosaicism was identifiable but 5% was below the limit of detection. This result suggests through extrapolation that the tetrasomy 12p is present in <10% of cells in our patient's blood, confirming the tissue-limited mosaicism of PKS. Multiple recent studies show that array CGH provides greater sensitivity than chromosome analysis to detect mosaic abnormalities including that of tetrasomy 12p in blood specimens. However, our case demonstrates that the biology of PKS precludes the exclusive use of array CGH on blood for diagnosis. A tissue sample should continue to be the diagnostic gold standard for PKS.

  5. Novel Genomic Aberrations in Testicular Germ Cell Tumors by Array-CGH, and Associated Gene Expression Changes

    Directory of Open Access Journals (Sweden)

    Rolf I. Skotheim

    2006-01-01

    Full Text Available Introduction: Testicular germ cell tumors of adolescent and young adult men (TGCTs generally have near triploid and complex karyotypes. The actual genes driving the tumorigenesis remain essentially to be identified. Materials and Methods: To determine the detailed DNA copy number changes, and investigate their impact on gene expression levels, we performed an integrated microarray profiling of TGCT genomes and transcriptomes. We analyzed 17 TGCTs, three precursor lesions, and the embryonal carcinoma cell lines, NTERA2 and 2102Ep, by comparative genomic hybridization microarrays (array-CGH, and integrated the data with transcriptome profiles of the same samples. Results: The gain of chromosome arm 12p was, as expected, the most common aberration, and we found CCND2, CD9, GAPD, GDF3, NANOG, and TEAD4 to be the therein most highly over-expressed genes. Additional frequent genomic aberrations revealed some shorter chromosomal segments, which are novel to TGCT, as well as known aberrations for which we here refined boundaries. These include gains from 7p15.2 and 21q22.2, and losses of 4p16.3 and 22q13.3. Integration of DNA copy number information to gene expression profiles identified that BRCC3, FOS, MLLT11, NES, and RAC1 may act as novel oncogenes in TGCT. Similarly, DDX26, ERCC5, FZD4, NME4, OPTN, and RB1 were both lost and under-expressed genes, and are thus putative TGCT suppressor genes. Conclusion: This first genome-wide integrated array-CGH and gene expression profiling of TGCT provides novel insights into the genome biology underlying testicular tumorigenesis.

  6. Genome-wide microarray expression and genomic alterations by array-CGH analysis in neuroblastoma stem-like cells.

    Directory of Open Access Journals (Sweden)

    Raquel Ordóñez

    Full Text Available Neuroblastoma has a very diverse clinical behaviour: from spontaneous regression to a very aggressive malignant progression and resistance to chemotherapy. This heterogeneous clinical behaviour might be due to the existence of Cancer Stem Cells (CSC, a subpopulation within the tumor with stem-like cell properties: a significant proliferation capacity, a unique self-renewal capacity, and therefore, a higher ability to form new tumors. We enriched the CSC-like cell population content of two commercial neuroblastoma cell lines by the use of conditioned cell culture media for neurospheres, and compared genomic gains and losses and genome expression by array-CGH and microarray analysis, respectively (in CSC-like versus standard tumor cells culture. Despite the array-CGH did not show significant differences between standard and CSC-like in both analyzed cell lines, the microarray expression analysis highlighted some of the most relevant biological processes and molecular functions that might be responsible for the CSC-like phenotype. Some signalling pathways detected seem to be involved in self-renewal of normal tissues (Wnt, Notch, Hh and TGF-β and contribute to CSC phenotype. We focused on the aberrant activation of TGF-β and Hh signalling pathways, confirming the inhibition of repressors of TGF-β pathway, as SMAD6 and SMAD7 by RT-qPCR. The analysis of the Sonic Hedgehog pathway showed overexpression of PTCH1, GLI1 and SMO. We found overexpression of CD133 and CD15 in SIMA neurospheres, confirming that this cell line was particularly enriched in stem-like cells. This work shows a cross-talk among different pathways in neuroblastoma and its importance in CSC-like cells.

  7. Selection of single blastocysts for fresh transfer via standard morphology assessment alone and with array CGH for good prognosis IVF patients: results from a randomized pilot study

    Directory of Open Access Journals (Sweden)

    Yang Zhihong

    2012-05-01

    Full Text Available Abstract Background Single embryo transfer (SET remains underutilized as a strategy to reduce multiple gestation risk in IVF, and its overall lower pregnancy rate underscores the need for improved techniques to select one embryo for fresh transfer. This study explored use of comprehensive chromosomal screening by array CGH (aCGH to provide this advantage and improve pregnancy rate from SET. Methods First-time IVF patients with a good prognosis (age Results For patients in Group A (n = 55, 425 blastocysts were biopsied and analyzed via aCGH (7.7 blastocysts/patient. Aneuploidy was detected in 191/425 (44.9% of blastocysts in this group. For patients in Group B (n = 48, 389 blastocysts were microscopically examined (8.1 blastocysts/patient. Clinical pregnancy rate was significantly higher in the morphology + aCGH group compared to the morphology-only group (70.9 and 45.8%, respectively; p = 0.017; ongoing pregnancy rate for Groups A and B were 69.1 vs. 41.7%, respectively (p = 0.009. There were no twin pregnancies. Conclusion Although aCGH followed by frozen embryo transfer has been used to screen at risk embryos (e.g., known parental chromosomal translocation or history of recurrent pregnancy loss, this is the first description of aCGH fully integrated with a clinical IVF program to select single blastocysts for fresh SET in good prognosis patients. The observed aneuploidy rate (44.9% among biopsied blastocysts highlights the inherent imprecision of SET when conventional morphology is used alone. Embryos randomized to the aCGH group implanted with greater efficiency, resulted in clinical pregnancy more often, and yielded a lower miscarriage rate than those selected without aCGH. Additional studies are needed to verify our pilot data and confirm a role for on-site, rapid aCGH for IVF patients contemplating fresh SET.

  8. Array-CGH and clinical characterization in a patient with subtelomeric 6p deletion without ocular dysgenesis.

    Science.gov (United States)

    Piccione, Maria; Antona, R; Salzano, E; Cavani, S; Malacarne, M; Morreale Bubella, R; Pierluigi, M; Viaggi, C D; Corsello, Giovanni

    2012-01-01

    Subtelomeric terminal 6p deletion has been recognized as a clinically identifiable syndrome including facial dysmorphism, malformation of the anterior eye chamber, hearing loss, heart defects, and developmental delay. Genotype-phenotype correlations of previously published patients have strongly suggested anterior eye segment anomalies as one of the major malformations of the syndrome if the critical 6p25 region contains the FOXC 1 gene. In addition, the presence in this region of one or more genes involved in hearing loss has been hypothesized. We report a patient with a 47,XYY karyotype and submicroscopic terminal 6p deletion. Further characterization of the deletion with array comparative genome hybridization also revealed a cryptic microduplication on chromosome 19. The patient showed dysmorphic features, neuromotor retardation, and profound language impairment, in absence of hearing loss and structural eye anomalies. As far as we know this is the first reported terminal 6p25.1 deletion case without eye dysgenesis precisely characterized by array-CGH. Our result suggests that the genes in this region may not be obvious candidates for hearing loss and demonstrate the need for further elucidation of the function of the genes involved in eye developmental processes.

  9. Screening of 50 cypriot patients with autism spectrum disorders or autistic features using 400K custom array-CGH.

    Science.gov (United States)

    Kousoulidou, Ludmila; Moutafi, Maria; Nicolaides, Paola; Hadjiloizou, Stavros; Christofi, Christos; Paradesiotou, Anna; Anastasiadou, Violetta; Sismani, Carolina; Patsalis, Philippos C

    2013-01-01

    Autism spectrum disorders (ASDs) comprise a distinct entity of neurodevelopmental disorders with a strong genetic component. Despite the identification of several candidate genes and causative genomic copy number variations (CNVs), the majority of ASD cases still remain unresolved. We have applied microarray-based comparative genomic hybridization (array-CGH) using Agilent 400K custom array in the first Cyprus population screening for identification of ASD-associated CNVs. A cohort of 50 ASD patients (G1), their parents (G2), 50 ethnically matched normal controls (G3), and 80 normal individuals having children with various developmental and neurological conditions (G4) were tested. As a result, 14 patients were found to carry 20 potentially causative aberrations, two of which were de novo. Comparison of the four population groups revealed an increased rate of rare disease-associated variants in normal parents of children with autism. The above data provided additional evidence, supporting the complexity of ASD aetiology in comparison to other developmental disorders involving cognitive impairment. Furthermore, we have demonstrated the rationale of a more targeted approach combining accurate clinical description with high-resolution population-oriented genomic screening for defining the role of CNVs in autism and identifying meaningful associations on the molecular level.

  10. Significance of genome-wide analysis of copy number alterations and UPD in myelodysplastic syndromes using combined CGH - SNP arrays.

    Science.gov (United States)

    Ahmad, Ausaf; Iqbal, M Anwar

    2012-01-01

    Genetic information is an extremely valuable data source in characterizing the personal nature of cancer. Chromosome instability is a hallmark of most cancer cells. Chromosomal abnormalities are correlated with poor prognosis, disease classification, risk stratification, and treatment selection. Copy number alterations (CNAs) are an important molecular signature in cancer initiation, development, and progression. Recent application of whole-genome tools to characterize normal and cancer genomes provides the powerful molecular cytogenetic means to enumerate the multiple somatic, genetic and epigenetic alterations that occur in cancer. Combined array comparative genomic hybridization (aCGH) with single nucleotide polymorphism (SNP) array is a useful technique allowing detection of CNAs and loss of heterozygosity (LOH) or uni-parental disomy (UPD) together in a single experiment. It also provides allelic information on deletions, duplications, and amplifications. UPD can result in an abnormal phenotype when the chromosomes involved are imprinted. Myelodysplastic syndromes (MDS) are the most common clonal stem cell hematologic malignancy characterized by ineffective hematopoiesis, which leads to rapid progression into acute myeloid leukemia. UPD that occurs without concurrent changes in the gene copy number is a common chromosomal defect in hematologic malignancies, especially in MDS. Approximately 40-50% of MDS patients do not have karyotypic abnormalities that are detectable using classical metaphase cytogenetic techniques (MC) because of inherent limitations of MC, low resolution and the requirement of having dividing cells. In this review, we highlight advances in the clinical application of microarray technology in MDS and discuss the clinical potential of microarray.

  11. Screening of 50 Cypriot Patients with Autism Spectrum Disorders or Autistic Features Using 400K Custom Array-CGH

    Directory of Open Access Journals (Sweden)

    Ludmila Kousoulidou

    2013-01-01

    Full Text Available Autism spectrum disorders (ASDs comprise a distinct entity of neurodevelopmental disorders with a strong genetic component. Despite the identification of several candidate genes and causative genomic copy number variations (CNVs, the majority of ASD cases still remain unresolved. We have applied microarray-based comparative genomic hybridization (array-CGH using Agilent 400K custom array in the first Cyprus population screening for identification of ASD-associated CNVs. A cohort of 50 ASD patients (G1, their parents (G2, 50 ethnically matched normal controls (G3, and 80 normal individuals having children with various developmental and neurological conditions (G4 were tested. As a result, 14 patients were found to carry 20 potentially causative aberrations, two of which were de novo. Comparison of the four population groups revealed an increased rate of rare disease-associated variants in normal parents of children with autism. The above data provided additional evidence, supporting the complexity of ASD aetiology in comparison to other developmental disorders involving cognitive impairment. Furthermore, we have demonstrated the rationale of a more targeted approach combining accurate clinical description with high-resolution population-oriented genomic screening for defining the role of CNVs in autism and identifying meaningful associations on the molecular level.

  12. Genome-wide detection of copy number variations among diverse horse breeds by array CGH.

    Science.gov (United States)

    Wang, Wei; Wang, Shenyuan; Hou, Chenglin; Xing, Yanping; Cao, Junwei; Wu, Kaifeng; Liu, Chunxia; Zhang, Dong; Zhang, Li; Zhang, Yanru; Zhou, Huanmin

    2014-01-01

    Recent studies have found that copy number variations (CNVs) are widespread in human and animal genomes. CNVs are a significant source of genetic variation, and have been shown to be associated with phenotypic diversity. However, the effect of CNVs on genetic variation in horses is not well understood. In the present study, CNVs in 6 different breeds of mare horses, Mongolia horse, Abaga horse, Hequ horse and Kazakh horse (all plateau breeds) and Debao pony and Thoroughbred, were determined using aCGH. In total, seven hundred CNVs were identified ranging in size from 6.1 Kb to 0.57 Mb across all autosomes, with an average size of 43.08 Kb and a median size of 15.11 Kb. By merging overlapping CNVs, we found a total of three hundred and fifty-three CNV regions (CNVRs). The length of the CNVRs ranged from 6.1 Kb to 1.45 Mb with average and median sizes of 38.49 Kb and 13.1 Kb. Collectively, 13.59 Mb of copy number variation was identified among the horses investigated and accounted for approximately 0.61% of the horse genome sequence. Five hundred and eighteen annotated genes were affected by CNVs, which corresponded to about 2.26% of all horse genes. Through the gene ontology (GO), genetic pathway analysis and comparison of CNV genes among different breeds, we found evidence that CNVs involving 7 genes may be related to the adaptation to severe environment of these plateau horses. This study is the first report of copy number variations in Chinese horses, which indicates that CNVs are ubiquitous in the horse genome and influence many biological processes of the horse. These results will be helpful not only in mapping the horse whole-genome CNVs, but also to further research for the adaption to the high altitude severe environment for plateau horses.

  13. Combined subtractive cDNA cloning and array CGH: an efficient approach for identification of overexpressed genes in DNA amplicons

    Directory of Open Access Journals (Sweden)

    De Paepe Anne

    2004-02-01

    Full Text Available Abstract Background Activation of proto-oncogenes by DNA amplification is an important mechanism in the development and maintenance of cancer cells. Until recently, identification of the targeted genes relied on labour intensive and time consuming positional cloning methods. In this study, we outline a straightforward and efficient strategy for fast and comprehensive cloning of amplified and overexpressed genes. Results As a proof of principle, we analyzed neuroblastoma cell line IMR-32, with at least two amplification sites along the short arm of chromosome 2. In a first step, overexpressed cDNA clones were isolated using a PCR based subtractive cloning method. Subsequent deposition of these clones on a custom microarray and hybridization with IMR-32 DNA, resulted in the identification of clones that were overexpressed due to gene amplification. Using this approach, amplification of all previously reported amplified genes in this cell line was detected. Furthermore, four additional clones were found to be amplified, including the TEM8 gene on 2p13.3, two anonymous transcripts, and a fusion transcript, resulting from 2p13.3 and 2p24.3 fused sequences. Conclusions The combinatorial strategy of subtractive cDNA cloning and array CGH analysis allows comprehensive amplicon dissection, which opens perspectives for improved identification of hitherto unknown targeted oncogenes in cancer cells.

  14. Improving molecular diagnosis of aniridia and WAGR syndrome using customized targeted array-based CGH

    Science.gov (United States)

    Vallespín, Elena; Villaverde, Cristina; Martín-Arenas, Rubén; Vélez-Monsalve, Camilo; Lorda-Sánchez, Isabel; Nevado, Julián; Trujillo-Tiebas, María José; Lapunzina, Pablo; Ayuso, Carmen; Corton, Marta

    2017-01-01

    Chromosomal deletions at 11p13 are a frequent cause of congenital Aniridia, a rare pan-ocular genetic disease, and of WAGR syndrome, accounting up to 30% of cases. First-tier genetic testing for newborn with aniridia, to detect 11p13 rearrangements, includes Multiplex Ligation-dependent Probe Amplification (MLPA) and karyotyping. However, neither of these approaches allow obtaining a complete picture of the high complexity of chromosomal deletions and breakpoints in aniridia. Here, we report the development and validation of a customized targeted array-based comparative genomic hybridization, so called WAGR-array, for comprehensive high-resolution analysis of CNV in the WAGR locus. Our approach increased the detection rate in a Spanish cohort of 38 patients with aniridia, WAGR syndrome and other related ocular malformations, allowing to characterize four undiagnosed aniridia cases, and to confirm MLPA findings in four additional patients. For all patients, breakpoints were accurately established and a contiguous deletion syndrome, involving a large number of genes, was identified in three patients. Moreover, we identified novel microdeletions affecting 3' PAX6 regulatory regions in three families with isolated aniridia. This tool represents a good strategy for the genetic diagnosis of aniridia and associated syndromes, allowing for a more accurate CNVs detection, as well as a better delineation of breakpoints. Our results underline the clinical importance of performing exhaustive and accurate analysis of chromosomal rearrangements for patients with aniridia, especially newborns and those without defects in PAX6 after diagnostic screening. PMID:28231309

  15. Integrated high-resolution array CGH and SKY analysis of homozygous deletions and other genomic alterations present in malignant mesothelioma cell lines.

    Science.gov (United States)

    Klorin, Geula; Rozenblum, Ester; Glebov, Oleg; Walker, Robert L; Park, Yoonsoo; Meltzer, Paul S; Kirsch, Ilan R; Kaye, Frederic J; Roschke, Anna V

    2013-05-01

    High-resolution oligonucleotide array comparative genomic hybridization (aCGH) and spectral karyotyping (SKY) were applied to a panel of malignant mesothelioma (MMt) cell lines. SKY has not been applied to MMt before, and complete karyotypes are reported based on the integration of SKY and aCGH results. A whole genome search for homozygous deletions (HDs) produced the largest set of recurrent and non-recurrent HDs for MMt (52 recurrent HDs in 10 genomic regions; 36 non-recurrent HDs). For the first time, LINGO2, RBFOX1/A2BP1, RPL29, DUSP7, and CCSER1/FAM190A were found to be homozygously deleted in MMt, and some of these genes could be new tumor suppressor genes for MMt. Integration of SKY and aCGH data allowed reconstruction of chromosomal rearrangements that led to the formation of HDs. Our data imply that only with acquisition of structural and/or numerical karyotypic instability can MMt cells attain a complete loss of tumor suppressor genes located in 9p21.3, which is the most frequently homozygously deleted region. Tetraploidization is a late event in the karyotypic progression of MMt cells, after HDs in the 9p21.3 region have already been acquired.

  16. [Subchromosomal microdeletion identified by molecular karyotyping using DNA microarrays (array CGH) in Rett syndrome girls negative for MECP2 gene mutations].

    Science.gov (United States)

    Vorsanova, S G; Iurov, I Iu; Voinova, V Iu; Kurinnaia, O S; Zelenova, M A; Demidova, I A; Ulas, E V; Iurov, Iu B

    2013-01-01

    Molecular karyotyping using DNA microarrays (array CGH) was applied for identification of subchromosomal microdeletions in a cohort of 12 girls with clinical features of RETT syndrome, but negative for MECP2 gene mutations. Recurrent microdeletions of MECP2 gene in chromosome X (locus Xq28) were identified in 5 girls of 12 studied. Probably RTT girls with subchromosomic microdeletions in Xq28 could represent a special subtype of the disease, which appears as clinically milder than the classic form of disease. In one case, an atypical form of RTT was associated with genomic abnormalities affecting CDKL5 gene and region critical for microdeletion Prader-Willi and Angelman syndromes (15q11.2). In addition, data are presented for the first time that genetic variation in regions 3p13, 3q27.1, and 1q21.1-1q21.2 could associate with RTT-like clinical manifestations. Without application of molecular karyotyping technology and bioinformatic method of assessing the pathogenic significance of genomic rearrangements these RTT-like girls negative for MECP2 gene mutations were considered as cases of idiopathic mental retardation associated with autism. It should be noted that absence of intragenic mutations in MECP2 gene is not sufficient criteria to reject the clinical diagnosis of RTT. To avoid errors in the genetic diagnosis of this genetically heterogeneous brain disease molecular cytogenetic studies using high resolution oligonucleotide array CGH (molecular karyotyping) are needed.

  17. Random DNA fragmentation allows detection of single-copy, single-exon alterations of copy number by oligonucleotide array CGH in clinical FFPE samples.

    Science.gov (United States)

    Hostetter, Galen; Kim, Su Young; Savage, Stephanie; Gooden, Gerald C; Barrett, Michael; Zhang, Jian; Alla, Lalitamba; Watanabe, April; Einspahr, Janine; Prasad, Anil; Nickoloff, Brian J; Carpten, John; Trent, Jeffrey; Alberts, David; Bittner, Michael

    2010-01-01

    Genomic technologies, such as array comparative genomic hybridization (aCGH), increasingly offer definitive gene dosage profiles in clinical samples. Historically, copy number profiling was limited to large fresh-frozen tumors where intact DNA could be readily extracted. Genomic analyses of pre-neoplastic tumors and diagnostic biopsies are often limited to DNA processed by formalin-fixation and paraffin-embedding (FFPE). We present specialized protocols for DNA extraction and processing from FFPE tissues utilizing DNase processing to generate randomly fragmented DNA. The protocols are applied to FFPE clinical samples of varied tumor types, from multiple institutions and of varied block age. Direct comparative analyses with regression coefficient were calculated on split-sample (portion fresh/portion FFPE) of colorectal tumor samples. We show equal detection of a homozygous loss of SMAD4 at the exon-level in the SW480 cell line and gene-specific alterations in the split tumor samples. aCGH application to a set of archival FFPE samples of skin squamous cell carcinomas detected a novel hemizygous deletion in INPP5A on 10q26.3. Finally we present data on derivative of log ratio, a particular sensitive detector of measurement variance, for 216 sequential hybridizations to assess protocol reliability over a wide range of FFPE samples.

  18. BAC array CGH in patients with Velocardiofacial syndrome-like features reveals genomic aberrations on chromosome region 1q21.1

    Directory of Open Access Journals (Sweden)

    Estivill Xavier

    2009-12-01

    Full Text Available Abstract Background Microdeletion of the chromosome 22q11.2 region is the most common genetic aberration among patients with velocardiofacial syndrome (VCFS but a subset of subjects do not show alterations of this chromosome region. Methods We analyzed 18 patients with VCFS-like features by comparative genomic hybridisation (aCGH array and performed a face-to-face slide hybridization with two different arrays: a whole genome and a chromosome 22-specific BAC array. Putative rearrangements were confirmed by FISH and MLPA assays. Results One patient carried a combination of rearrangements on 1q21.1, consisting in a microduplication of 212 kb and a close microdeletion of 1.15 Mb, previously reported in patients with variable phenotypes, including mental retardation, congenital heart defects (CHD and schizophrenia. While 326 control samples were negative for both 1q21.1 rearrangements, one of 73 patients carried the same 212-kb microduplication, reciprocal to TAR microdeletion syndrome. Also, we detected four copy number variants (CNVs inherited from one parent (a 744-kb duplication on 10q11.22; a 160 kb duplication and deletion on 22q11.21 in two cases; and a gain of 140 kb on 22q13.2, not present in control subjects, raising the potential role of these CNVs in the VCFS-like phenotype. Conclusions Our results confirmed aCGH as a successful strategy in order to characterize additional submicroscopic aberrations in patients with VCF-like features that fail to show alterations in 22q11.2 region. We report a 212-kb microduplication on 1q21.1, detected in two patients, which may contribute to CHD.

  19. Custom CGH array profiling of copy number variations (CNVs on chromosome 6p21.32 (HLA locus in patients with venous malformations associated with multiple sclerosis

    Directory of Open Access Journals (Sweden)

    Salvi Fabrizio

    2010-04-01

    Full Text Available Abstract Background Multiple sclerosis (MS is a complex disorder thought to result from an interaction between environmental and genetic predisposing factors which have not yet been characterised, although it is known to be associated with the HLA region on 6p21.32. Recently, a picture of chronic cerebrospinal venous insufficiency (CCSVI, consequent to stenosing venous malformation of the main extra-cranial outflow routes (VM, has been described in patients affected with MS, introducing an additional phenotype with possible pathogenic significance. Methods In order to explore the presence of copy number variations (CNVs within the HLA locus, a custom CGH array was designed to cover 7 Mb of the HLA locus region (6,899,999 bp; chr6:29,900,001-36,800,000. Genomic DNA of the 15 patients with CCSVI/VM and MS was hybridised in duplicate. Results In total, 322 CNVs, of which 225 were extragenic and 97 intragenic, were identified in 15 patients. 234 known polymorphic CNVs were detected, the majority of these being situated in non-coding or extragenic regions. The overall number of CNVs (both extra- and intragenic showed a robust and significant correlation with the number of stenosing VMs (Spearman: r = 0.6590, p = 0.0104; linear regression analysis r = 0.6577, p = 0.0106. The region we analysed contains 211 known genes. By using pathway analysis focused on angiogenesis and venous development, MS, and immunity, we tentatively highlight several genes as possible susceptibility factor candidates involved in this peculiar phenotype. Conclusions The CNVs contained in the HLA locus region in patients with the novel phenotype of CCSVI/VM and MS were mapped in detail, demonstrating a significant correlation between the number of known CNVs found in the HLA region and the number of CCSVI-VMs identified in patients. Pathway analysis revealed common routes of interaction of several of the genes involved in angiogenesis and immunity contained within this region

  20. PanCGH: a genotype-calling algorithm for pangenome CGH data.

    NARCIS (Netherlands)

    Bayjanov, J.; Wels, M.W.W.; Starrenburg, M.; Hylckama Vlieg, J.E. van; Siezen, R.J.; Molenaar, D.

    2009-01-01

    MOTIVATION: Pangenome arrays contain DNA oligomers targeting several sequenced reference genomes from the same species. In microbiology, these can be employed to investigate the often high genetic variability within a species by comparative genome hybridization (CGH). The biological interpretation o

  1. Tiling array-CGH for the assessment of genomic similarities among synchronous unilateral and bilateral invasive breast cancer tumor pairs

    Directory of Open Access Journals (Sweden)

    Ringnér Markus

    2008-07-01

    Full Text Available Abstract Background Today, no objective criteria exist to differentiate between individual primary tumors and intra- or intermammary dissemination respectively, in patients diagnosed with two or more synchronous breast cancers. To elucidate whether these tumors most likely arise through clonal expansion, or whether they represent individual primary tumors is of tumor biological interest and may have clinical implications. In this respect, high resolution genomic profiling may provide a more reliable approach than conventional histopathological and tumor biological factors. Methods 32 K tiling microarray-based comparative genomic hybridization (aCGH was used to explore the genomic similarities among synchronous unilateral and bilateral invasive breast cancer tumor pairs, and was compared with histopathological and tumor biological parameters. Results Based on global copy number profiles and unsupervised hierarchical clustering, five of ten (p = 1.9 × 10-5 unilateral tumor pairs displayed similar genomic profiles within the pair, while only one of eight bilateral tumor pairs (p = 0.29 displayed pair-wise genomic similarities. DNA index, histological type and presence of vessel invasion correlated with the genomic analyses. Conclusion Synchronous unilateral tumor pairs are often genomically similar, while synchronous bilateral tumors most often represent individual primary tumors. However, two independent unilateral primary tumors can develop synchronously and contralateral tumor spread can occur. The presence of an intraductal component is not informative when establishing the independence of two tumors, while vessel invasion, the presence of which was found in clustering tumor pairs but not in tumor pairs that did not cluster together, supports the clustering outcome. Our data suggest that genomically similar unilateral tumor pairs may represent a more aggressive disease that requires the addition of more severe treatment modalities, and

  2. Submicroscopic deletions of 11q24-25 in individuals without Jacobsen syndrome: re-examination of the critical region by high-resolution array-CGH

    Directory of Open Access Journals (Sweden)

    VanAllen Margot I

    2008-11-01

    Full Text Available Abstract Background Jacobsen syndrome is a rare contiguous gene disorder that results from a terminal deletion of the long arm of chromosome 11. It is typically characterized by intellectual disability, a variety of physical anomalies and a distinctive facial appearance. The 11q deletion has traditionally been identified by routine chromosome analysis. Array-based comparative genomic hybridization (array-CGH has offered new opportunities to identify and refine chromosomal abnormalities in regions known to be associated with clinical syndromes. Results Using the 1 Mb BAC array (Spectral Genomics, we screened 70 chromosomally normal children with idiopathic intellectual disability (ID and congenital abnormalities, and identified five cases with submicroscopic abnormalities believed to contribute to their phenotypes. Here, we provide detailed molecular cytogenetic descriptions and clinical presentation of two unrelated subjects with de novo submicroscopic deletions within chromosome bands 11q24-25. In subject 1 the chromosome rearrangement consisted of a 6.18 Mb deletion (from 128.25–134.43 Mb and an adjacent 5.04 Mb duplication (from 123.15–128.19 Mb, while in subject 2, a 4.74 Mb interstitial deletion was found (from 124.29–129.03 Mb. Higher resolution array analysis (385 K Nimblegen was used to refine all breakpoints. Deletions of the 11q24-25 region are known to be associated with Jacobsen syndrome (JBS: OMIM 147791. However, neither of the subjects had the typical features of JBS (trigonocephaly, platelet disorder, heart abnormalities. Both subjects had ID, dysmorphic features and additional phenotypic abnormalities: subject 1 had a kidney abnormality, bilateral preauricular pits, pectus excavatum, mild to moderate conductive hearing loss and behavioral concerns; subject 2 had macrocephaly, an abnormal MRI with delayed myelination, fifth finger shortening and squaring of all fingertips, and sensorineural hearing loss. Conclusion Two

  3. An Xq22.3 duplication detected by comparative genomic hybridization microarray (Array-CGH) defines a new locus (FGS5) for FG syndrome.

    Science.gov (United States)

    Jehee, Fernanda Sarquis; Rosenberg, Carla; Krepischi-Santos, Ana Cristina; Kok, Fernando; Knijnenburg, Jeroen; Froyen, Guy; Vianna-Morgante, Angela M; Opitz, John M; Passos-Bueno, Maria Rita

    2005-12-15

    FG syndrome is an X-linked multiple congenital anomalies (MCA) syndrome. It has been mapped to four distinct loci FGS1-4, through linkage analysis (Xq13, Xp22.3, and Xp11.4-p11.3) and based on the breakpoints of an X chromosome inversion (Xq11:Xq28), but so far no gene has been identified. We describe a boy with FG syndrome who has an inherited duplication at band Xq22.3 detected by comparative genomic hybridization microarray (Array-CGH). These duplication maps outside all four loci described so far for FG syndrome, representing therefore a new locus, which we propose to be called FGS5. MID2, a gene closely related to MID1, which is known to be mutated in Opitz G/BBB syndrome, maps within the duplicated segment of our patient. Since FG and Opitz G/BBB syndromes share many manifestations we considered MID2 a candidate gene for FG syndrome. We also discuss the involvement of other potential genes within the duplicated segment and its relationship with clinical symptoms of our patient, as well as the laboratory abnormalities found in his mother, a carrier of the duplication.

  4. High-resolution array CGH profiling identifies Na/K transporting ATPase interacting 2 (NKAIN2 as a predisposing candidate gene in neuroblastoma.

    Directory of Open Access Journals (Sweden)

    Paolo Romania

    Full Text Available Neuroblastoma (NB, the most common solid cancer in early childhood, usually occurs sporadically but also its familial occurance is known in 1-2% of NB patients. Germline mutations in the ALK and PHOX2B genes have been found in a subset of familial NBs. However, because some individuals harbouring mutations in these genes do not develop this tumor, additional genetic alterations appear to be required for NB pathogenesis. Herein, we studied an Italian family with three NB patients, two siblings and a first cousin, carrying an ALK germline-activating mutation R1192P, that was inherited from their unaffected mothers and with no mutations in the PHOX2B gene. A comparison between somatic and germline DNA copy number changes in the two affected siblings by a high resolution array-based Comparative Genomic Hybridization (CGH analysis revealed a germline gain at NKAIN2 (Na/K transporting ATPase interacting 2 locus in one of the sibling, that was inherited from the parent who does not carry the ALK mutation. Surprisingly, NKAIN2 was expressed at high levels also in the affected sibling that lacks the genomic gain at this locus, clearly suggesting the existance of other regulatory mechanisms. High levels of NKAIN2 were detected in the MYCN-amplified NB cell lines and in the most aggressive NB lesions as well as in the peripheral blood of a large cohort of NB patients. Consistent with a role of NKAIN2 in NB development, NKAIN2 was down-regulated during all-trans retinoic acid differentiation in two NB cell lines. Taken together, these data indicate a potential role of NKAIN2 gene in NB growth and differentiation.

  5. Development of a novel ozone- and photo-stable HyPer5 red fluorescent dye for array CGH and microarray gene expression analysis with consistent performance irrespective of environmental conditions

    Directory of Open Access Journals (Sweden)

    Kille Peter

    2008-11-01

    Full Text Available Abstract Background Array-based comparative genomic hybridization (CGH and gene expression profiling have become vital techniques for identifying molecular defects underlying genetic diseases. Regardless of the microarray platform, cyanine dyes (Cy3 and Cy5 are one of the most widely used fluorescent dye pairs for microarray analysis owing to their brightness and ease of incorporation, enabling high level of assay sensitivity. However, combining both dyes on arrays can become problematic during summer months when ozone levels rise to near 25 parts per billion (ppb. Under such conditions, Cy5 is known to rapidly degrade leading to loss of signal from either "homebrew" or commercial arrays. Cy5 can also suffer disproportionately from dye photobleaching resulting in distortion of (Cy5/Cy3 ratios used in copy number analysis. Our laboratory has been active in fluorescent dye research to find a suitable alternative to Cy5 that is stable to ozone and resistant to photo-bleaching. Here, we report on the development of such a dye, called HyPer5, and describe its' exceptional ozone and photostable properties on microarrays. Results Our results show HyPer5 signal to be stable to high ozone levels. Repeated exposure of mouse arrays hybridized with HyPer5-labeled cDNA to 300 ppb ozone at 5, 10 and 15 minute intervals resulted in no signal loss from the dye. In comparison, Cy5 arrays showed a dramatic 80% decrease in total signal during the same interval. Photobleaching experiments show HyPer5 to be resistant to light induced damage with 3- fold improvement in dye stability over Cy5. In high resolution array CGH experiments, HyPer5 is demonstrated to detect chromosomal aberrations at loci 2p21-16.3 and 15q26.3-26.2 from three patient sample using bacterial artificial chromosome (BAC arrays. The photostability of HyPer5 is further documented by repeat array scanning without loss of detection. Additionally, HyPer5 arrays are shown to preserve sensitivity and

  6. Characterization of genetic rearrangements in esophageal squamous carcinoma cell lines by a combination of M-FISH and array-CGH: further confirmation of some split genomic regions in primary tumors

    Directory of Open Access Journals (Sweden)

    Hao Jia-Jie

    2012-08-01

    Full Text Available Abstract Background Chromosomal and genomic aberrations are common features of human cancers. However, chromosomal numerical and structural aberrations, breakpoints and disrupted genes have yet to be identified in esophageal squamous cell carcinoma (ESCC. Methods Using multiplex-fluorescence in situ hybridization (M-FISH and oligo array-based comparative hybridization (array-CGH, we identified aberrations and breakpoints in six ESCC cell lines. Furthermore, we detected recurrent breakpoints in primary tumors by dual-color FISH. Results M-FISH and array-CGH results revealed complex numerical and structural aberrations. Frequent gains occurred at 3q26.33-qter, 5p14.1-p11, 7pter-p12.3, 8q24.13-q24.21, 9q31.1-qter, 11p13-p11, 11q11-q13.4, 17q23.3-qter, 18pter-p11, 19 and 20q13.32-qter. Losses were frequent at 18q21.1-qter. Breakpoints that clustered within 1 or 2 Mb were identified, including 9p21.3, 11q13.3-q13.4, 15q25.3 and 3q28. By dual-color FISH, we observed that several recurrent breakpoint regions in cell lines were also present in ESCC tumors. In particular, breakpoints clustered at 11q13.3-q13.4 were identified in 43.3% (58/134 of ESCC tumors. Both 11q13.3-q13.4 splitting and amplification were significantly correlated with lymph node metastasis (LNM (P = 0.004 and 0.022 and advanced stages (P = 0.004 and 0.039. Multivariate logistic regression analysis revealed that only 11q13.3-q13.4 splitting was an independent predictor for LNM (P = 0.026. Conclusions The combination of M-FISH and array-CGH helps produce more accurate karyotypes. Our data provide significant, detailed information for appropriate uses of these ESCC cell lines for cytogenetic and molecular biological studies. The aberrations and breakpoints detected in both the cell lines and primary tumors will contribute to identify affected genes involved in the development and progression of ESCC.

  7. A patient with limb girdle muscular dystrophy carries a TRIM32 deletion, detected by a novel CGH array, in compound heterozygosis with a nonsense mutation.

    Science.gov (United States)

    Neri, M; Selvatici, R; Scotton, C; Trabanelli, C; Armaroli, A; De Grandis, D; Levy, N; Gualandi, F; Ferlini, A

    2013-06-01

    Limb girdle muscular dystrophy 2H is a rare autosomal recessive muscular dystrophy, clinically highly variable, caused by mutations in the TRIM32 gene. Here we describe a 35-years-old who experienced progressive muscle weakness. The muscle biopsy revealed an unspecific pattern of atrophic and hypertrophic fibers; the immunohistochemistry for several proteins was normal. Comparative genomic hybridization (CGH) analysis showed a heterozygous deletion of the entire TRIM32 gene. On the other allele we identified the R316X nonsense mutation. The genetic diagnosis of LGMD2H in this case was reached by using a novel high throughput diagnostic tool.

  8. A male newborn with VACTERL association and Fanconi anemia with a FANCB deletion detected by array comparative genomic hybridization (aCGH).

    Science.gov (United States)

    Umaña, Luis A; Magoulas, Pilar; Bi, Weimin; Bacino, Carlos A

    2011-12-01

    We report on a male newborn with multiple congenital abnormalities consistent with the diagnosis of VACTERL association (vertebral, anal, cardiac, tracheo-esophageal fistula, renal, and limb anomalies), who had Fanconi anemia (complementation group B) recognized by the detection of a deletion in chromosome Xp22.2 using an oligonucleotide array. The diagnosis of Fanconi anemia was confirmed by increased chromosomal breakage abnormalities observed in cultured cells that were treated with cross-linking agents. This is the first report in the literature of Fanconi anemia complementation group B detected by oligonucleotide array testing postnatally.

  9. Array-CGH and quantitative PCR genetic analysis in a case with bilateral hypoplasia of pulmonary arteries and lungs and simultaneous unilateral renal agenesis.

    Science.gov (United States)

    Hussein, Kais; Steinemann, Doris; Scholz, Henrike; Menkhaus, Ralf; Feist, Henning; Kreipe, Hans

    2010-08-18

    We describe the clinical course and have characterised anatomically and genetically a unique case of a newborn with bilateral hypoplasia of pulmonary arteries, consecutive extremely hypoplastic lung tissue and associated unilateral renal agenesis. Intrauterine oxygenation by the placenta seemed to have allowed normotrophic body maturity but immediately after delivery, in the third trimester, progressive hypoxemia developed and the newborn succumbed to acute respiratory failure. Genetic analysis by array-based comparative genomic hybridisation and quantitative PCR revealed duplication of 1p21, which, however, might not be the disease causing aberration. This case might represent an extreme form of previously reported, rare cases with simultaneous dysorganogenesis of lungs and kidneys.

  10. Array CGH characterization of an unbalanced X-autosome translocation associated with Xq27.2-qter deletion, 11q24.3-qter duplication and Xq22.3-q27.1 duplication in a girl with primary amenorrhea and mental retardation.

    Science.gov (United States)

    Chen, Chih-Ping; Lin, Shuan-Pei; Chern, Schu-Rern; Kuo, Yu-Ling; Wu, Peih-Shan; Chen, Yu-Ting; Lee, Meng-Shan; Wang, Wayseen

    2014-02-01

    We present array comparative genomic hybridization (aCGH) characterization of an unbalanced X-autosome translocation with an Xq interstitial segmental duplication in a 16-year-old girl with primary ovarian failure, mental retardation, attention deficit disorder, learning difficulty and facial dysmorphism. aCGH analysis revealed an Xq27.2-q28 deletion, an 11q24.3-q25 duplication, and an inverted duplication of Xq22.3-q27.1. The karyotype was 46,X,der(X)t(X;11)(q27.2;q24.3) dup(X)(q27.1q22.3). We discuss the genotype-phenotype correlation in this case. Our case provides evidence for an association of primary amenorrhea and mental retardation with concomitant unbalanced X-autosome translocation and X chromosome rearrangement.

  11. arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays

    Directory of Open Access Journals (Sweden)

    Moreau Yves

    2005-05-01

    Full Text Available Abstract Background The availability of the human genome sequence as well as the large number of physically accessible oligonucleotides, cDNA, and BAC clones across the entire genome has triggered and accelerated the use of several platforms for analysis of DNA copy number changes, amongst others microarray comparative genomic hybridization (arrayCGH. One of the challenges inherent to this new technology is the management and analysis of large numbers of data points generated in each individual experiment. Results We have developed arrayCGHbase, a comprehensive analysis platform for arrayCGH experiments consisting of a MIAME (Minimal Information About a Microarray Experiment supportive database using MySQL underlying a data mining web tool, to store, analyze, interpret, compare, and visualize arrayCGH results in a uniform and user-friendly format. Following its flexible design, arrayCGHbase is compatible with all existing and forthcoming arrayCGH platforms. Data can be exported in a multitude of formats, including BED files to map copy number information on the genome using the Ensembl or UCSC genome browser. Conclusion ArrayCGHbase is a web based and platform independent arrayCGH data analysis tool, that allows users to access the analysis suite through the internet or a local intranet after installation on a private server. ArrayCGHbase is available at http://medgen.ugent.be/arrayCGHbase/.

  12. Genomic profiling of plasmablastic lymphoma using array comparative genomic hybridization (aCGH: revealing significant overlapping genomic lesions with diffuse large B-cell lymphoma

    Directory of Open Access Journals (Sweden)

    Lu Xin-Yan

    2009-11-01

    Full Text Available Abstract Background Plasmablastic lymphoma (PL is a subtype of diffuse large B-cell lymphoma (DLBCL. Studies have suggested that tumors with PL morphology represent a group of neoplasms with clinopathologic characteristics corresponding to different entities including extramedullary plasmablastic tumors associated with plasma cell myeloma (PCM. The goal of the current study was to evaluate the genetic similarities and differences among PL, DLBCL (AIDS-related and non AIDS-related and PCM using array-based comparative genomic hybridization. Results Examination of genomic data in PL revealed that the most frequent segmental gain (> 40% include: 1p36.11-1p36.33, 1p34.1-1p36.13, 1q21.1-1q23.1, 7q11.2-7q11.23, 11q12-11q13.2 and 22q12.2-22q13.3. This correlated with segmental gains occurring in high frequency in DLBCL (AIDS-related and non AIDS-related cases. There were some segmental gains and some segmental loss that occurred in PL but not in the other types of lymphoma suggesting that these foci may contain genes responsible for the differentiation of this lymphoma. Additionally, some segmental gains and some segmental loss occurred only in PL and AIDS associated DLBCL suggesting that these foci may be associated with HIV infection. Furthermore, some segmental gains and some segmental loss occurred only in PL and PCM suggesting that these lesions may be related to plasmacytic differentiation. Conclusion To the best of our knowledge, the current study represents the first genomic exploration of PL. The genomic aberration pattern of PL appears to be more similar to that of DLBCL (AIDS-related or non AIDS-related than to PCM. Our findings suggest that PL may remain best classified as a subtype of DLBCL at least at the genome level.

  13. Detection and precise mapping of germline rearrangements in BRCA1, BRCA2, MSH2, and MLH1 using zoom-in array comparative genomic hybridization (aCGH)

    DEFF Research Database (Denmark)

    Staaf, Johan; Törngren, Therese; Rambech, Eva

    2008-01-01

    Disease-predisposing germline mutations in cancer susceptibility genes may consist of large genomic rearrangements that are challenging to detect and characterize using standard PCR-based mutation screening methods. Here, we describe a custom-made zoom-in microarray comparative genomic hybridizat......Disease-predisposing germline mutations in cancer susceptibility genes may consist of large genomic rearrangements that are challenging to detect and characterize using standard PCR-based mutation screening methods. Here, we describe a custom-made zoom-in microarray comparative genomic...... from several 100 kb, including large flanking regions, to convenient design...

  14. OPTIMAL DESIGN OF SMART ANTENNA ARRAY

    Institute of Scientific and Technical Information of China (English)

    Gao Feng; Liu Qizhong; Shan Runhong; Zhang Hou

    2004-01-01

    This letter investigates an efficient design procedure integrating the Genetic Algorithm (GA) with the Finite Difference Time Domain (FDTD) for the fast optimal design of Smart Antenna Arrays (SAA). The FDTD is used to analyze SAA with mutual coupling. Then,on the basis of the Maximal Signal to Noise Ratio (MSNR) criteria, the GA is applied to the optimization of weighting elements and structure of SAA. Finally, the effectiveness of the analysis is evaluated by experimental antenna arrays.

  15. Sentinel-3 Solar Array Design

    Science.gov (United States)

    Combet, Y.; Reutenauer, X.; Mouret, G.; Guerrere, S.; Ergan, A.; Ferrando, E.; Riva, S.; Hodgetts, P.; Levesque, D.; D'Accolti, G.

    2011-10-01

    Sentinel-3 is primarily a mission to support services relating to the marine environment, with capability to serve numerous land-, atmospheric- and cryospheric- based application areas. The mission's main objective is to determine parameters, such as sea-surface topography, sea- and land-surface temperatures, as well as ocean- and land-surface colours with high-end accuracy and reliability. For this mission, Thales Alenia Space has been selected as the spacecraft prime contractor and is also responsible for the solar array. In this frame, TAS leads a European industrial team, comprising Selex Galileo for the photovoltaic assembly and Patria for the panel substrate.

  16. CMOS array design automation techniques

    Science.gov (United States)

    Lombardi, T.; Feller, A.

    1976-01-01

    The design considerations and the circuit development for a 4096-bit CMOS SOS ROM chip, the ATL078 are described. Organization of the ATL078 is 512 words by 8 bits. The ROM was designed to be programmable either at the metal mask level or by a directed laser beam after processing. The development of a 4K CMOS SOS ROM fills a void left by available ROM chip types, and makes the design of a totally major high speed system more realizable.

  17. Arrayed-Waveguide Layout for AWG Design

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    The key issue of the complex geometry for arrayed-waveguide grating(AWG)is the design of length difference.Conventional-type scheme and improved-type scheme of the ar-rayed -waveguide layout are proposed.For each scheme,the layout rules were given and one ex-ample was presented. At last ,the two schemes were compared with each other.

  18. Design of a Novel MEMS Gyroscope Array

    OpenAIRE

    Feng Sun; Wei Wang; Xiaoyong Lv

    2013-01-01

    This paper reports a novel four degree-of-freedom (DOF) MEMS vibratory gyroscope. A MEMS gyroscope array is then presented using the novel gyroscope unit. In the design of the proposed 4-DOF MEMS vibratory gyroscope, the elements of the drive-mode are set inside the whole gyroscope architecture, and the elements of sense-mode are set around the drive-mode, which thus makes it possible to combine several gyroscope units into a gyroscope array through sense-modes of all the units. The complete ...

  19. A novel method to design sparse linear arrays for ultrasonic phased array.

    Science.gov (United States)

    Yang, Ping; Chen, Bin; Shi, Ke-Ren

    2006-12-22

    In ultrasonic phased array testing, a sparse array can increase the resolution by enlarging the aperture without adding system complexity. Designing a sparse array involves choosing the best or a better configuration from a large number of candidate arrays. We firstly designed sparse arrays by using a genetic algorithm, but found that the arrays have poor performance and poor consistency. So, a method based on the Minimum Redundancy Linear Array was then adopted. Some elements are determined by the minimum-redundancy array firstly in order to ensure spatial resolution and then a genetic algorithm is used to optimize the remaining elements. Sparse arrays designed by this method have much better performance and consistency compared to the arrays designed only by a genetic algorithm. Both simulation and experiment confirm the effectiveness.

  20. Design of a Novel MEMS Gyroscope Array

    Directory of Open Access Journals (Sweden)

    Feng Sun

    2013-01-01

    Full Text Available This paper reports a novel four degree-of-freedom (DOF MEMS vibratory gyroscope. A MEMS gyroscope array is then presented using the novel gyroscope unit. In the design of the proposed 4-DOF MEMS vibratory gyroscope, the elements of the drive-mode are set inside the whole gyroscope architecture, and the elements of sense-mode are set around the drive-mode, which thus makes it possible to combine several gyroscope units into a gyroscope array through sense-modes of all the units. The complete 2-DOF vibratory structure is utilized in both the drive-mode and sense-mode of the gyroscope unit, thereby providing the desired bandwidth and inherent robustness. The gyroscope array combines several gyroscope units by using the unique detection mass, which will increase the gain of sense-mode and improve the sensitivity of the system. The simulation results demonstrate that, compared to a single gyroscope unit, the gain of gyroscope array (n = 6 is increased by about 8 dB; a 3 dB bandwidth of 100 Hz in sense-mode and 190 Hz in drive-mode are also provided. The bandwidths of both modes are highly matched with each other, providing a bandwidth of 100 Hz for the entire system, thus illustrating that it could satisfy the requirements in practical applications.

  1. Design of a novel MEMS gyroscope array.

    Science.gov (United States)

    Wang, Wei; Lv, Xiaoyong; Sun, Feng

    2013-01-28

    This paper reports a novel four degree-of-freedom (DOF) MEMS vibratory gyroscope. A MEMS gyroscope array is then presented using the novel gyroscope unit. In the design of the proposed 4-DOF MEMS vibratory gyroscope, the elements of the drive-mode are set inside the whole gyroscope architecture, and the elements of sense-mode are set around the drive-mode, which thus makes it possible to combine several gyroscope units into a gyroscope array through sense-modes of all the units. The complete 2-DOF vibratory structure is utilized in both the drive-mode and sense-mode of the gyroscope unit, thereby providing the desired bandwidth and inherent robustness. The gyroscope array combines several gyroscope units by using the unique detection mass, which will increase the gain of sense-mode and improve the sensitivity of the system. The simulation results demonstrate that, compared to a single gyroscope unit, the gain of gyroscope array (n = 6) is increased by about 8 dB; a 3 dB bandwidth of 100 Hz in sense-mode and 190 Hz in drive-mode are also provided. The bandwidths of both modes are highly matched with each other, providing a bandwidth of 100 Hz for the entire system, thus illustrating that it could satisfy the requirements in practical applications.

  2. The Murchison Widefield Array: Design Overview

    CERN Document Server

    Lonsdale, Colin J; Morales, Miguel F; Briggs, Frank H; Benkevitch, Leonid; Bowman, Judd D; Bunton, John D; Burns, Steven; Corey, Brian E; deSouza, Ludi; Doeleman, Sheperd S; Derome, Mark; Deshpande, Avinash; Gopalakrishna, M R; Greenhill, Lincoln J; Herne, David; Hewitt, Jacqueline N; Kamini, P A; Kasper, Justin C; Kincaid, Barton B; Kocz, Jonathan; Kowald, Errol; Kratzenberg, Eric; Kumar, Deepak; Lynch, Mervyn J; Madhavi, S; Matejek, Michael; Mitchell, Daniel; Morgan, Edward; Oberoi, Divya; Ord, Steven; Pathikulangara, Joseph; Prabu, T; Rogers, Alan E E; Roshi, Anish; Salah, Joseph E; Sault, Robert J; Shankar, N Udaya; Srivani, K S; Stevens, Jamie; Tingay, Steven; Vaccarella, Annino; Waterson, Mark; Wayth, Randall B; Webster, Rachel L; Whitney, Alan R; Williams, Andrew; Williams, Christopher

    2009-01-01

    The Murchison Widefield Array (MWA) is a dipole-based aperture array synthesis telescope designed to operate in the 80-300 MHz frequency range. It is capable of a wide range of science investigations, but is initially focused on three key science projects. These are detection and characterization of 3-dimensional brightness temperature fluctuations in the 21cm line of neutral hydrogen during the Epoch of Reionization (EoR) at redshifts from 6 to 10, solar imaging and remote sensing of the inner heliosphere via propagation effects on signals from distant background sources,and high-sensitivity exploration of the variable radio sky. The array design features 8192 dual-polarization broad-band active dipoles, arranged into 512 tiles comprising 16 dipoles each. The tiles are quasi-randomly distributed over an aperture 1.5km in diameter, with a small number of outliers extending to 3km. All tile-tile baselines are correlated in custom FPGA-based hardware, yielding a Nyquist-sampled instantaneous monochromatic uv co...

  3. Design & fabrication of cantilever array biosensors

    Directory of Open Access Journals (Sweden)

    Anja Boisen

    2009-09-01

    Full Text Available Surface immobilization of functional receptors on microfabricated cantilever arrays offers a new paradigm for the development of biosensors based on nanomechanics. Microcantilever-based systems are capable of real-time, multiplexed detection of unlabeled disease markers in extremely small volumes of samples. Currently available fabrication technology will allow the integration of electronic readout and sample introduction into a single unit, decreasing the device size, detection time, and cost. Biosensing technologies based on microfabricated cantilever arrays involving multiple cantilevers, electronic processing, and even local telemetry on a single chip have the potential of satisfying the need for highly sensitive and selective multiple-target detection in very small samples. Here we will review the design and fabrication process of cantilever-based biosensors.

  4. Conformal array design on arbitrary polygon surface with transformation optics

    Science.gov (United States)

    Deng, Li; Wu, Yongle; Hong, Weijun; Zhu, Jianfeng; Peng, Biao; Li, Shufang

    2016-06-01

    A transformation-optics based method to design a conformal antenna array on an arbitrary polygon surface is proposed and demonstrated in this paper. This conformal antenna array can be adjusted to behave equivalently as a uniformly spaced linear array by applying an appropriate transformation medium. An typical example of general arbitrary polygon conformal arrays, not limited to circular array, is presented, verifying the proposed approach. In summary, the novel arbitrary polygon surface conformal array can be utilized in array synthesis and beam-forming, maintaining all benefits of linear array.

  5. Conformal array design on arbitrary polygon surface with transformation optics

    Directory of Open Access Journals (Sweden)

    Li Deng

    2016-06-01

    Full Text Available A transformation-optics based method to design a conformal antenna array on an arbitrary polygon surface is proposed and demonstrated in this paper. This conformal antenna array can be adjusted to behave equivalently as a uniformly spaced linear array by applying an appropriate transformation medium. An typical example of general arbitrary polygon conformal arrays, not limited to circular array, is presented, verifying the proposed approach. In summary, the novel arbitrary polygon surface conformal array can be utilized in array synthesis and beam-forming, maintaining all benefits of linear array.

  6. Design & fabrication of cantilever array biosensors

    DEFF Research Database (Denmark)

    Boisen, Anja; Thundat, T

    2009-01-01

    Surface immobilization of functional receptors on microfabricated cantilever arrays offers a new paradigm for the development of biosensors based on nanomechanics. Microcantilever-based systems are capable of real-time, multiplexed detection of unlabeled disease markers in extremely small volumes......, electronic processing, and even local telemetry on a single chip have the potential of satisfying the need for highly sensitive and selective multiple-target detection in very small samples. Here we will review the design and fabrication process of cantilever-based biosensors....

  7. Sparse array design using statistical restricted isometry property.

    Science.gov (United States)

    Gaumond, Charles F; Edelmann, Geoffrey F

    2013-08-01

    The numerical application of the statistical reduced isometry property (StRIP) and statistical null space property (SNSP) is presented and demonstrated for the design of underwater acoustic line arrays. This recent approach predicts the theoretical utility of specific subsampled arrays for compressive sensing. Three subsamplings are presented: Random, Golomb, and Wichmann. The Golomb array has no repeated spacings. The Wichmann array includes every possible interval of spacings. The SNSP is shown insensitive to the cases presented. The StRIP of the Golomb array predicts superior invertibility and is shown to perform well using at-sea data.

  8. A multi-sample based method for identifying common CNVs in normal human genomic structure using high-resolution aCGH data.

    Directory of Open Access Journals (Sweden)

    Chihyun Park

    Full Text Available BACKGROUND: It is difficult to identify copy number variations (CNV in normal human genomic data due to noise and non-linear relationships between different genomic regions and signal intensity. A high-resolution array comparative genomic hybridization (aCGH containing 42 million probes, which is very large compared to previous arrays, was recently published. Most existing CNV detection algorithms do not work well because of noise associated with the large amount of input data and because most of the current methods were not designed to analyze normal human samples. Normal human genome analysis often requires a joint approach across multiple samples. However, the majority of existing methods can only identify CNVs from a single sample. METHODOLOGY AND PRINCIPAL FINDINGS: We developed a multi-sample-based genomic variations detector (MGVD that uses segmentation to identify common breakpoints across multiple samples and a k-means-based clustering strategy. Unlike previous methods, MGVD simultaneously considers multiple samples with different genomic intensities and identifies CNVs and CNV zones (CNVZs; CNVZ is a more precise measure of the location of a genomic variant than the CNV region (CNVR. CONCLUSIONS AND SIGNIFICANCE: We designed a specialized algorithm to detect common CNVs from extremely high-resolution multi-sample aCGH data. MGVD showed high sensitivity and a low false discovery rate for a simulated data set, and outperformed most current methods when real, high-resolution HapMap datasets were analyzed. MGVD also had the fastest runtime compared to the other algorithms evaluated when actual, high-resolution aCGH data were analyzed. The CNVZs identified by MGVD can be used in association studies for revealing relationships between phenotypes and genomic aberrations. Our algorithm was developed with standard C++ and is available in Linux and MS Windows format in the STL library. It is freely available at: http://embio.yonsei.ac.kr/~Park/mgvd.php.

  9. Ladder Arrangement Method for Stealth Design of Vivaldi Antenna Array

    Directory of Open Access Journals (Sweden)

    XiaoXiang He

    2013-01-01

    Full Text Available A novel stealth design method for X-band Vivaldi antenna arrays is proposed in this paper by ladder arrangement along radiation direction. Two-element array, eight-element array, and 3 × 7-element array are investigated in this paper. S parameters, RCSs, and radiation patterns are studied, respectively. According to the ladder arrangement of Vivaldi antennas presented, 16.3 dBsm maximal RCS reduction is achieved with satisfied radiation performance. As simulated and measured, results demonstrate that the effectiveness of the presented low RCS design method is validated.

  10. Multifrequency Arrays: Design and Cost Considerations

    Science.gov (United States)

    1975-07-08

    Alverson, W. K., Pippin, J. E., Simon, J. W., "A Reciprocal TEM Latching Ferrite Phase Shifter," 1966 IEEE-GMTT International Symposium Digest, p 241...of Reciprocal Latching Ferrite Phase Shifters to Lightweight Electronic Scanner Phased Arrays," Proc. IEEE, vol 56, p 1931-1939, Nov 1968. 14...8 Switched -line phase shifter for a two-frequency ratio ... 9 Dual frequency array concept... 10 Phase error effects on side-lobe level... 16

  11. Optimized low-cost-array field designs for photovoltaic systems

    Energy Technology Data Exchange (ETDEWEB)

    Post, H.N.; Carmichael, D.C.; Castle, J.A.

    1982-01-01

    As manager of the US Department of Energy Photovoltaic Systems Definition Project, Sandia National Laboratories is engaged in a comprehensive program to define and develop array field subsystems which can achieve the lowest possible lifecycle costs. The major activity of this program is described, namely, the design and development of optimized, modular array fields for photovoltaic (PV) systems. As part of this activity, design criteria and performance requirements for specific array subsystems including support structures, foundations, intermodule connections, field wiring, lightning protection, system grounding, site preparation, and monitoring and control have been defined and evaluated. Similarly, fully integrated flat-panel array field designs, optimized for lowest lifecycle costs, have been developed for system sizes ranging from 20 to 500 kW/sub p/. Key features, subsystem requirements, and projected costs for these array field designs are presented and discussed.

  12. Designing microcapsule arrays that propagate chemical signals

    Science.gov (United States)

    Bhattacharya, Amitabh; Balazs, Anna C.

    2010-08-01

    Using analysis and simulation, we show how ordered arrays of microcapsules in solution can be harnessed to propagate chemical signals in directed and controllable ways, allowing the signals to be transmitted over macroscopic distances. The system encompasses two types of capsules that are localized on an adhesive surface. The “signaling” capsules release inducer molecules, which trigger “targets” to release nanoparticles. The released nanoparticles can bind to the underlying surface and thus, create adhesion gradients, which then propel the signaling capsules to shuttle between neighboring targets. This arrangement acts like a relay, so that triggering target capsules at a particular location in the array also triggers target capsules in adjacent locations. For an array containing two target columns, our simulations and analysis show that steady input signal leads to a sustained periodic output. For an array containing multiple target columns, we show that by introducing a prescribed ratio of nanoparticle release rates between successive target columns, a chemical signal can be propagated along the array without dissipation. We also demonstrate that similar signal transmission cannot be performed via diffusion alone.

  13. Probe design for expression arrays using OligoWiz

    DEFF Research Database (Denmark)

    Wernersson, Rasmus

    2014-01-01

    Since all measurements from a DNA microarray is dependant on the probes used, a good choice of probes is of vital importa nce when designing custom micro-arrays. This chapter describes how to de sign expression arrays using the “ OligoWiz ” software suite. The general desired features of good...... probes and the issues which probe design must address are introduced and a conceptual (rather than mathematical) description of how OligoWiz scores the quality of th e potential probes is presented. This is followed by a detailed step-by-step guide to designing expression arrays with OligoWiz....

  14. CMOS array design automation techniques. [metal oxide semiconductors

    Science.gov (United States)

    Ramondetta, P.; Feller, A.; Noto, R.; Lombardi, T.

    1975-01-01

    A low cost, quick turnaround technique for generating custom metal oxide semiconductor arrays using the standard cell approach was developed, implemented, tested and validated. Basic cell design topology and guidelines are defined based on an extensive analysis that includes circuit, layout, process, array topology and required performance considerations particularly high circuit speed.

  15. Electronics design of a PET detector module with APD array

    CERN Document Server

    Wang Yong

    2002-01-01

    The author summarizes the advantages of APD-array for using in PET scanner. The front-end electronics for an experimental APD detector module was built and tested. According to the characteristics of APD-array and the demands of the signal readout in PET scanner, the full electronics system of an APD detector module was designed and presented in detail

  16. Array antennas design in dependence of element-phasing

    Science.gov (United States)

    Zichner, R.; Chandra, M.

    2009-05-01

    Array antennas are used in science as well as for commercial and military purposes. The used element antennas act in accordance to their desired uses, for example radars or stationer GPS satellites. Typical components are for example slotted waveguides, patches, yagi-antennas and helix-antennas. All these elements do stand out with their own characteristics based on their special applications. If these elements are formed into an array configuration, the effectiveness can be improved immensely. There is a relation between the array functions and the physical array properties like the element alignment (linear, planar, circular), distances between the elements and so on. Among the physical properties there are other attributes like phase or amplitude coefficients, which are of great significance. The aim of this study was to provide an insight into the problem of array design, as far as the antenna element phase is concerned. Along with this, array radiation characteristics effects are presented. With the help of the extracted cognitions beam forming behaviour can be shown and the array phase behaviour can be analysed. One of the main applications is to simulate the array characteristics, like the radiation characteristic or the gain, for displacements of the array feeding point. A software solution that simulates the phase shift of a given array pattern is sought to adjust the feeding point.

  17. Array antennas design in dependence of element-phasing

    Directory of Open Access Journals (Sweden)

    R. Zichner

    2009-05-01

    Full Text Available Array antennas are used in science as well as for commercial and military purposes. The used element antennas act in accordance to their desired uses, for example radars or stationer GPS satellites. Typical components are for example slotted waveguides, patches, yagi-antennas and helix-antennas. All these elements do stand out with their own characteristics based on their special applications. If these elements are formed into an array configuration, the effectiveness can be improved immensely. There is a relation between the array functions and the physical array properties like the element alignment (linear, planar, circular, distances between the elements and so on. Among the physical properties there are other attributes like phase or amplitude coefficients, which are of great significance. The aim of this study was to provide an insight into the problem of array design, as far as the antenna element phase is concerned. Along with this, array radiation characteristics effects are presented. With the help of the extracted cognitions beam forming behaviour can be shown and the array phase behaviour can be analysed. One of the main applications is to simulate the array characteristics, like the radiation characteristic or the gain, for displacements of the array feeding point. A software solution that simulates the phase shift of a given array pattern is sought to adjust the feeding point.

  18. Design and Analysis Tools for Deployable Solar Array Systems Project

    Data.gov (United States)

    National Aeronautics and Space Administration — Large, lightweight, deployable solar array structures have been identified as a key enabling technology for NASA with analysis and design of these structures being...

  19. APRON: A Cellular Processor Array Simulation and Hardware Design Tool

    Directory of Open Access Journals (Sweden)

    David R. W. Barr

    2009-01-01

    Full Text Available We present a software environment for the efficient simulation of cellular processor arrays (CPAs. This software (APRON is used to explore algorithms that are designed for massively parallel fine-grained processor arrays, topographic multilayer neural networks, vision chips with SIMD processor arrays, and related architectures. The software uses a highly optimised core combined with a flexible compiler to provide the user with tools for the design of new processor array hardware architectures and the emulation of existing devices. We present performance benchmarks for the software processor array implemented on standard commodity microprocessors. APRON can be configured to use additional processing hardware if necessary and can be used as a complete graphical user interface and development environment for new or existing CPA systems, allowing more users to develop algorithms for CPA systems.

  20. Discrete Dipole Approximation Aided Design Method for Nanostructure Arrays

    Institute of Scientific and Technical Information of China (English)

    ZHU Shao-Li; LUO Xian-Gang; DU Chun-Lei

    2007-01-01

    A discrete dipole approximation (DDA) aided design method is proposed to determine the parameters of nanostructure arrays. The relationship between the thickness, period and extinction efficiency of nanostructure arrays for the given shape can be calculated using the DDA. Based on the calculated curves, the main parameters of the nanostructure arrays such as thickness and period can be determined. Using this aided method, a rhombic sliver nanostructure array is designed with the determinant parameters of thickness (40 nm) and period (440 nm).We further fabricate the rhombic sliver nanostructure arrays and testify the character of the extinction spectra.The obtained extinction spectra is within the visible range and the full width at half maximum is 99nm, as is expected.

  1. Nanowire array photovoltaics: Radial disorder versus design for optimal efficiency

    CERN Document Server

    Sturmberg, Björn C P; Botten, Lindsay C; Asatryan, Ara A; Poulton, Christopher G; McPhedran, Ross C; de Sterke, C Martijn

    2014-01-01

    Solar cell designs based on disordered nanostructures tend to have higher efficiencies than structures with uniform absorbers, though the reason is poorly understood. To resolve this, we use a semi-analytic approach to determine the physical mechanism leading to enhanced efficiency in arrays containing nanowires with a variety of radii. We use our findings to systematically design arrays that outperform randomly composed structures. An ultimate efficiency of 23.75% is achieved with an array containing 30% silicon, an increase of almost 10% over a homogeneous film of equal thickness.

  2. Introduction to embedded system design using field programmable gate arrays

    CERN Document Server

    Dubey, Rahul

    2009-01-01

    Offers information on the use of field programmable gate arrays (FPGAs) in the design of embedded systems. This text considers a hypothetical robot controller as an embedded application and weaves around it related concepts of FPGA-based digital design. It is suitable for both students and designers who have worked with microprocessors.

  3. Design of magnet arrays for permanent magnetic linear motor

    Institute of Scientific and Technical Information of China (English)

    Junhong MAO; Junhang LUO; Qiang JIANG; Youbai XIE

    2008-01-01

    An iron-less single side permanent magnetic linear motor structure is presented,and two-dimensional analytical formulae for its magnetic field are deduced to design the types of magnetic arrays,the thickness of permanent magnet,and the duty ratio of magnet arrays,etc.With certain design parameters,conventional arrays are used instead of a piecewise Halbach arrays,and the machining and assembling of the motor are greatly simplified.Calculation results coincide with that of ANSYS.The analytical formulae can be used in designing cored linear motors by modifying boundary conditions.A linear motor driven bench with a single degree of freedom is realized,where the travel reaches 27 mm,the mass of the moving parts is 1.4 kg,and the maximum acceleration iS 11.5 m/s2.

  4. Phased-array radar design application of radar fundamentals

    CERN Document Server

    Jeffrey, Thomas

    2009-01-01

    Phased-Array Radar Design is a text-reference designed for electrical engineering graduate students in colleges and universities as well as for corporate in-house training programs for radar design engineers, especially systems engineers and analysts who would like to gain hands-on, practical knowledge and skills in radar design fundamentals, advanced radar concepts, trade-offs for radar design and radar performance analysis.

  5. A study into the design of steerable microphone arrays

    CERN Document Server

    Lai, Chiong Ching; Leung, Yee Hong

    2017-01-01

    The book covers the design formulations for broadband beamformer targeting nearfield and farfield sources. The book content includes background information on the acoustic environment, including propagation medium, the array geometries, signal models and basic beamformer designs. Subsequently it introduces design formulation for nearfield, farfield and mixed nearfield-farfield beamformers and extends the design formulation into electronically steerable beamformers. In addition, a robust formulation is introduced for all the designs mentioned.

  6. The design and test of MEMS piezoresistive ultrasonic sensor arrays

    Institute of Scientific and Technical Information of China (English)

    Lian Deqin; He Changde; Zhang Hui; Yu Jiaqi; Yuan Kejing; Xue Chenyang

    2013-01-01

    The design,fabrication and packaging of a type of MEMS piezoresistive ultrasonic transducer array are introduced.The consistency of the resonance frequency and the sensitivity of the array are tested.Moreover,we detect the directivity and the multi-target identification ability of the array.The results of the consistency of the resonance frequency and the sensitivity show that there is a gap between the practical and theoretical results.This paper analyzes this problem in detail and points out the direction of improvement.As for the directivity,the actual result is consistent with the theoretical one.The results of multiple target distinguishing tests demonstrate that the smallest resolution angle of the array is 5.72° when the distance between the sensor array and measured objects is 2m.

  7. Detection of genomic copy number changes in patients with idiopathic mental retardation by high-resolution X-array-CGH: important role for increased gene dosage of XLMR genes.

    Science.gov (United States)

    Froyen, Guy; Van Esch, Hilde; Bauters, Marijke; Hollanders, Karen; Frints, Suzanna G M; Vermeesch, Joris R; Devriendt, Koen; Fryns, Jean-Pierre; Marynen, Peter

    2007-10-01

    A tiling X-chromosome-specific genomic array with a theoretical resolution of 80 kb was developed to screen patients with idiopathic mental retardation (MR) for submicroscopic copy number differences. Four patients with aberrations previously detected at lower resolution were first analyzed. This facilitated delineation of the location and extent of the aberration at high resolution and subsequently, more precise genotype-phenotype analyses. A cohort of 108 patients was screened, 57 of which were suspected of X-linked mental retardation (XLMR), 26 were probands of brother pairs, and 25 were sporadic cases. A total of 15 copy number changes in 14 patients (13%) were detected, which included two deletions and 13 duplications ranging from 0.1 to 2.7 Mb. The aberrations are associated with the phenotype in five patients (4.6%), based on the following criteria: de novo aberration; involvement of a known or candidate X-linked nonsyndromic(syndromic) MR (MRX(S)) gene; segregation with the disease in the family; absence in control individuals; and skewed X-inactivation in carrier females. These include deletions that contain the MRX(S) genes CDKL5, OPHN1, and CASK, and duplications harboring CDKL5, NXF5, MECP2, and GDI1. In addition, seven imbalances were apparent novel polymorphic regions because they do not fulfill the proposed criteria. Taken together, our data strongly suggest that not only deletions but also duplications on the X chromosome contribute to the phenotype more often than expected, supporting the increased gene dosage mechanism for deregulation of normal cognitive development.

  8. CMOS-array design-automation techniques

    Science.gov (United States)

    Feller, A.; Lombardt, T.

    1979-01-01

    Thirty four page report discusses design of 4,096-bit complementary metal oxide semiconductor (CMOS) read-only memory (ROM). CMOSROM is either mask or laser programable. Report is divided into six sections; section one describes background of ROM chips; section two presents design goals for chip; section three discusses chip implementation and chip statistics; conclusions and recommendations are given in sections four thru six.

  9. Optical design of microlens array for CMOS image sensors

    Science.gov (United States)

    Zhang, Rongzhu; Lai, Liping

    2016-10-01

    The optical crosstalk between the pixel units can influence the image quality of CMOS image sensor. In the meantime, the duty ratio of CMOS is low because of its pixel structure. These two factors cause the low detection sensitivity of CMOS. In order to reduce the optical crosstalk and improve the fill factor of CMOS image sensor, a microlens array has been designed and integrated with CMOS. The initial parameters of the microlens array have been calculated according to the structure of a CMOS. Then the parameters have been optimized by using ZEMAX and the microlens arrays with different substrate thicknesses have been compared. The results show that in order to obtain the best imaging quality, when the effect of optical crosstalk for CMOS is the minimum, the best distance between microlens array and CMOS is about 19.3 μm. When incident light successively passes through microlens array and the distance, obtaining the minimum facula is around 0.347 um in the active area. In addition, when the incident angle of the light is 0o 22o, the microlens array has obvious inhibitory effect on the optical crosstalk. And the anti-crosstalk distance between microlens array and CMOS is 0 μm 162 μm.

  10. Design Considerations for Phased Array Modules

    Science.gov (United States)

    1980-11-01

    basica )ly designed for C7 operation. In pulsed mode of oporation however, peak pov:e%.’ of 150:7 at 10.52GHz wras obtained for psoc pulse lengths and...repeating the above calculations with the appropriate value of referer:ce phase ýP applied to each element. Bearing in mind the tedious algebra involved in

  11. límites organizacionales del CGH

    Directory of Open Access Journals (Sweden)

    Carlos Chávez Becker

    2005-01-01

    Full Text Available El presente trabajo se centra en el análisis de los mecanismos que el Consejo General de Huelga empleó para tomar decisiones, su esquema de representación y su forma de operación política con el fin de establecer algunas relaciones significativas entre tales elementos analíticos y los resultados obtenidos por la organización al término del conflicto en febrero de 2000. La principal intención es evaluar al CGH como la organización de los estudiantes en términos de su actuar político a la luz de los costos y beneficios que representó su actividad.

  12. Compressive Sensing Based Design of Sparse Tripole Arrays

    Directory of Open Access Journals (Sweden)

    Matthew Hawes

    2015-12-01

    Full Text Available This paper considers the problem of designing sparse linear tripole arrays. In such arrays at each antenna location there are three orthogonal dipoles, allowing full measurement of both the horizontal and vertical components of the received waveform. We formulate this problem from the viewpoint of Compressive Sensing (CS. However, unlike for isotropic array elements (single antenna, we now have three complex valued weight coefficients associated with each potential location (due to the three dipoles, which have to be simultaneously minimised. If this is not done, we may only set the weight coefficients of individual dipoles to be zero valued, rather than complete tripoles, meaning some dipoles may remain at each location. Therefore, the contributions of this paper are to formulate the design of sparse tripole arrays as an optimisation problem, and then we obtain a solution based on the minimisation of a modified l 1 norm or a series of iteratively solved reweighted minimisations, which ensure a truly sparse solution. Design examples are provided to verify the effectiveness of the proposed methods and show that a good approximation of a reference pattern can be achieved using fewer tripoles than a Uniform Linear Array (ULA of equivalent length.

  13. Compressive Sensing Based Design of Sparse Tripole Arrays.

    Science.gov (United States)

    Hawes, Matthew; Liu, Wei; Mihaylova, Lyudmila

    2015-12-10

    This paper considers the problem of designing sparse linear tripole arrays. In such arrays at each antenna location there are three orthogonal dipoles, allowing full measurement of both the horizontal and vertical components of the received waveform. We formulate this problem from the viewpoint of Compressive Sensing (CS). However, unlike for isotropic array elements (single antenna), we now have three complex valued weight coefficients associated with each potential location (due to the three dipoles), which have to be simultaneously minimised. If this is not done, we may only set the weight coefficients of individual dipoles to be zero valued, rather than complete tripoles, meaning some dipoles may remain at each location. Therefore, the contributions of this paper are to formulate the design of sparse tripole arrays as an optimisation problem, and then we obtain a solution based on the minimisation of a modified l1 norm or a series of iteratively solved reweighted minimisations, which ensure a truly sparse solution. Design examples are provided to verify the effectiveness of the proposed methods and show that a good approximation of a reference pattern can be achieved using fewer tripoles than a Uniform Linear Array (ULA) of equivalent length.

  14. Design of nested Halbach cylinder arrays for magnetic refrigeration applications

    Energy Technology Data Exchange (ETDEWEB)

    Trevizoli, Paulo V., E-mail: trevizoli@polo.ufsc.br; Lozano, Jaime A.; Peixer, Guilherme F.; Barbosa Jr, Jader R.

    2015-12-01

    We present an experimentally validated analytical procedure to design nested Halbach cylinder arrays for magnetic cooling applications. The procedure aims at maximizing the magnetic flux density variation in the core of the array for a given set of design parameters, namely the inner diameter of the internal magnet, the air gap between the magnet cylinders, the number of segments of each magnet and the remanent flux density of the Nd{sub 2}Fe{sub 14}B magnet grade. The design procedure was assisted and verified by 3-D numerical modeling using a commercial software package. An important aspect of the optimal design is to maintain an uniform axial distribution of the magnetic flux density in the region of the inner gap occupied by the active magnetocaloric regenerator. An optimal nested Halbach cylinder array was manufactured and experimentally evaluated for the magnetic flux density in the inner gap. The analytically calculated magnetic flux density variation agreed to within 5.6% with the experimental value for the center point of the magnet gap. - Highlights: • An analytical procedure to design nested Halbach cylinder arrays is proposed. • An optimal magnet configuration was built based on the analytical procedure. • The procedure was validated with 3D COMSOL simulations and experimental data.

  15. Approximate Dynamic Programming for Fast Denoising of aCGH Data

    CERN Document Server

    Miller, Gary L; Schwartz, Russell; Tsourakakis, Charalampos E

    2010-01-01

    DNA sequence copy number is the number of copies of DNA at a region of a genome. Identifying genomic regions whose DNA copy number deviates from the normal is a crucial task in understanding cancer evolution. Array-based comparative genomic hybridization (aCGH) is a high-throughput technique for identifying DNA gain or loss. Due to the high level of noise in microarray data, however, interpretation of aCGH output is a difficult and error-prone task. In this paper, we adopt a recent formulation of the denoising aCGH data problem as a regularized least squares problem and propose an approximation algorithm within $\\epsilon$ additive error, where \\epsilon is an arbitrarily small positive constant. Specifically, we show that for n probes, we can approximate the optimal value of our function within additive \\epsilon with an algorithm that runs in $\\tilde{O}(n^{1.5} \\log{(\\frac{U}{\\epsilon}))}$ time, where U is the maximum value over the regularization term and the probes. The basis of our algorithm is the definiti...

  16. Evolutionary Multiobjective Design Targeting a Field Programmable Transistor Array

    Science.gov (United States)

    Aguirre, Arturo Hernandez; Zebulum, Ricardo S.; Coello, Carlos Coello

    2004-01-01

    This paper introduces the ISPAES algorithm for circuit design targeting a Field Programmable Transistor Array (FPTA). The use of evolutionary algorithms is common in circuit design problems, where a single fitness function drives the evolution process. Frequently, the design problem is subject to several goals or operating constraints, thus, designing a suitable fitness function catching all requirements becomes an issue. Such a problem is amenable for multi-objective optimization, however, evolutionary algorithms lack an inherent mechanism for constraint handling. This paper introduces ISPAES, an evolutionary optimization algorithm enhanced with a constraint handling technique. Several design problems targeting a FPTA show the potential of our approach.

  17. ArrayD: A general purpose software for Microarray design

    Directory of Open Access Journals (Sweden)

    Sharma Vineet K

    2004-10-01

    Full Text Available Abstract Background Microarray is a high-throughput technology to study expression of thousands of genes in parallel. A critical aspect of microarray production is the design aimed at space optimization while maximizing the number of gene probes and their replicates to be spotted. Results We have developed a software called 'ArrayD' that offers various alternative design solutions for an array given a set of user requirements. The user feeds the following inputs: type of source plates to be used, number of gene probes to be printed, number of replicates and number of pins to be used for printing. The solutions are stored in a text file. The choice of a design solution to be used will be governed by the spotting chemistry to be used and the accuracy of the robot. Conclusions ArrayD is a software for standard cartesian robots. The software aids users in preparing a judicious and elegant design. ArrayD is universally applicable and is available at http://www.igib.res.in/scientists/arrayd/arrayd.html.

  18. Experimental Charging Behavior of Orion UltraFlex Array Designs

    Science.gov (United States)

    Golofaro, Joel T.; Vayner, Boris V.; Hillard, Grover B.

    2010-01-01

    The present ground based investigations give the first definitive look describing the charging behavior of Orion UltraFlex arrays in both the Low Earth Orbital (LEO) and geosynchronous (GEO) environments. Note the LEO charging environment also applies to the International Space Station (ISS). The GEO charging environment includes the bounding case for all lunar mission environments. The UltraFlex photovoltaic array technology is targeted to become the sole power system for life support and on-orbit power for the manned Orion Crew Exploration Vehicle (CEV). The purpose of the experimental tests is to gain an understanding of the complex charging behavior to answer some of the basic performance and survivability issues to ascertain if a single UltraFlex array design will be able to cope with the projected worst case LEO and GEO charging environments. Stage 1 LEO plasma testing revealed that all four arrays successfully passed arc threshold bias tests down to -240 V. Stage 2 GEO electron gun charging tests revealed that only the front side area of indium tin oxide coated array designs successfully passed the arc frequency tests

  19. Analysis and design of low profile multiband multifunctional antenna arrays

    Science.gov (United States)

    Hunsicker, Walker F.

    Light-weight phased array antennas for aerospace and mobile applications require utilizing the same antenna aperture to provide multiple functions with dissimilar radiation pattern specifications (e.g., multiband operation for communications and tracking). Multi-functional antennas provide advantages over aggregate antenna clusters by reducing space requirements, and can aid in the optimal placement of all required apertures to provide adequate isolation between channels. Furthermore, the combination of antenna apertures into a common geometry mitigates co-site installation issues by addressing interference within the integrated radiator design itself as opposed to the extensive analysis which is required to configure multiple radiators in close proximity. The combination of multiple radiators into a single aperture can only be achieved with the proper selection of antenna topology and accompanying feed network design. This research proposes a new technique for the design of multiband arrays in which a common aperture is used. Highlighted by this method is the integration of a tri-band array comprised of an X-band (12 GHz) microstrip patch array on a superstrate above printed dual-band (1 and 2 GHz) slot loop antenna arrays in an octave-spaced lattice. The selection of a ground backing reflector is considered for improved gain and system packaging, but restricts the utility of the design principally due to the lambda/4 depth of the ground plane. Therefore, a novel multiband high impedance surfaces (HIS) is proposed to load the slot apertures for reduced height. The novel techniques proposed here will enable the design of a low profile and conformal single aperture supporting multi-band and multi-functional operations.

  20. A Design Proposal for an Inexpensive Parametric Array

    Science.gov (United States)

    1991-01-01

    surface. An alternative parametric array design that has the advantage of electrical beam-steering is to use an array of small ( Tonpilz ) piston drivers...IN dB// 1,.BAR Dp - 0. 05 ’r -a. 55 r U, U, RANGE OF OUTER EDGE OF ,,50 rx THE LINE OF CERAMIC RANGE OF EDGE OF I TRANSDUCER REFLECTOR 0 0.5 1. 0... transducer scaling law indicates that the acoustic power increases as the square of the dimensional increase. Thus for rings with twice the size, we would have

  1. Small Area Array-Based LED Luminaire Design

    Energy Technology Data Exchange (ETDEWEB)

    Thomas Yuan

    2008-01-09

    This report contains a summary of technical achievements during a three-year project to demonstrate high efficiency LED luminaire designs based on small area array-based gallium nitride diodes. Novel GaN-based LED array designs are described, specifically addressing the thermal, optical, electrical and mechanical requirements for the incorporation of such arrays into viable solid-state LED luminaires. This work resulted in the demonstration of an integrated luminaire prototype of 1000 lumens cool white light output with reflector shaped beams and efficacy of 89.4 lm/W at CCT of 6000oK and CRI of 73; and performance of 903 lumens warm white light output with reflector shaped beams and efficacy of 63.0 lm/W at CCT of 2800oK and CRI of 82. In addition, up to 1275 lumens cool white light output at 114.2 lm/W and 1156 lumens warm white light output at 76.5 lm/W were achieved if the reflector was not used. The success to integrate small area array-based LED designs and address thermal, optical, electrical and mechanical requirements was clearly achieved in these luminaire prototypes with outstanding performance and high efficiency.

  2. Programmable CGH on photochromic material using DMD

    Science.gov (United States)

    Alata, Romain; Pariani, Giorgio; Zamkotsian, Frederic; Lanzoni, Patrick; Bianco, Andrea; Bertarelli, Chiara

    2016-07-01

    Computer Generated Holograms (CGHs) are useful for wavefront shaping and complex optics testing, including aspherical and free-form optics. Today, CGHs are recorded directly with a laser or intermediates masks but allows only recording binary CGHs; binary CGHs are efficient but can reconstruct only pixilated images. We propose to use a Digital Micro-mirror Device (DMD) for writing binary CGHs as well as grayscale CGHs, able to reconstruct fulfilled images. DMD is actually studied at LAM, for generating programmable slit masks in multi-object spectrographs. It is composed of 2048x1080 individually controllable micro-mirrors, with a pitch of 13.68 μm. This is a real-time reconfigurable mask, perfect for recording CGHs. A first setup has been developed for hologram recording, where the DMD is enlightened with a collimated beam and illuminates a photosensible plate through an Offner relay, with a magnification of 1:1. Our set up resolution is 2-3 μm, leading to a CGH resolution equal to the DMD micro mirror size. In order to write and erase CGHs during test procedure or on request, we use a photochromic plate called PUR-GD71-50-ST developed at Politecnico di Milano. It is opaque at rest, and becomes transparent when it is illuminated with visible light, between 500 and 700 nm; then it can be erased by a UV flash. We choose to code the CGHs in equally spaced levels, so called stepped CGH. We recorded up to 1000x1000 pixels CGHs with a contrast greater than 50, knowing that the material is able to reach an ultimate contrast of 1000. A second bench has also been developed, dedicated to the reconstruction of the recorded images with a 632.8nm He-Ne laser beam. Very faithful reconstructions have been obtained. Thanks to our recording and reconstruction set-ups, we have been able to successfully record binary and stepped CGHs, and reconstruct them with a high fidelity, revealing the potential of this method for generating programmable/rewritable stepped CGHs on

  3. Electromagnetic linear machines with dual Halbach array design and analysis

    CERN Document Server

    Yan, Liang; Peng, Juanjuan; Zhang, Lei; Jiao, Zongxia

    2017-01-01

    This book extends the conventional two-dimensional (2D) magnet arrangement into 3D pattern for permanent magnet linear machines for the first time, and proposes a novel dual Halbach array. It can not only effectively increase the radial component of magnetic flux density and output force of tubular linear machines, but also significantly reduce the axial flux density, radial force and thus system vibrations and noises. The book is also the first to address the fundamentals and provide a summary of conventional arrays, as well as novel concepts for PM pole design in electric linear machines. It covers theoretical study, numerical simulation, design optimization and experimental works systematically. The design concept and analytical approaches can be implemented to other linear and rotary machines with similar structures. The book will be of interest to academics, researchers, R&D engineers and graduate students in electronic engineering and mechanical engineering who wish to learn the core principles, met...

  4. Interferometric array design optimizing the locations of the antenna pads

    CERN Document Server

    Boone, F

    2001-01-01

    The design of an interferometric array should allow optimal instrumental response regarding all possible source positions, times of integration and scientific goals. It should also take into account constraints such as forbidden regions on the ground due to impracticable topography. The complexity of the problem requires one to proceed by steps. A possible approach is to first consider a single observation and a single scientific purpose. A new algorithm is introduced to solve efficiently this particular problem called the configuration problem. It is based on the computation of pressure forces related to the discrepancies between the model (as determined by the scientific purpose) and the actual distribution of Fourier samples. The flexibility and rapidity of the method are well adapted to the full array design. A software named APO that can be used for the design of new generation interferometers such as ALMA and ATA has been developed.

  5. Monte Carlo design studies for the Cherenkov Telescope Array

    CERN Document Server

    Bernlöhr, K; Becherini, Y; Bigas, O Blanch; Carmona, E; Colin, P; Decerprit, G; Di Pierro, F; Dubois, F; Farnier, C; Funk, S; Hermann, G; Hinton, J A; Humensky, T B; Khélifi, B; Kihm, T; Komin, N; Lenain, J -P; Maier, G; Mazin, D; Medina, M C; Moralejo, A; Nolan, S J; Ohm, S; Wilhelmi, E de Oña; Parsons, R D; Arribas, M Paz; Pedaletti, G; Pita, S; Prokoph, H; Rulten, C B; Schwanke, U; Shayduk, M; Stamatescu, V; Vallania, P; Vorobiov, S; Wischnewski, R; Yoshikoshi, T; Zech, A

    2012-01-01

    The Cherenkov Telescopes Array (CTA) is planned as the future instrument for very-high-energy (VHE) gamma-ray astronomy with a wide energy range of four orders of magnitude and an improvement in sensitivity compared to current instruments of about an order of magnitude. Monte Carlo simulations are a crucial tool in the design of CTA. The ultimate goal of these simulations is to find the most cost-effective solution for given physics goals and thus sensitivity goals or to find, for a given cost, the solution best suited for different types of targets with CTA. Apart from uncertain component cost estimates, the main problem in this procedure is the dependence on a huge number of configuration parameters, both in specifications of individual telescope types and in the array layout. This is addressed by simulation of a huge array intended as a superset of many different realistic array layouts, and also by simulation of array subsets for different telescope parameters. Different analysis methods -- in use with cu...

  6. Design of photovoltaic central power station concentrator array

    Energy Technology Data Exchange (ETDEWEB)

    1984-02-01

    A design for a photovoltaic central power station using tracking concentrators has been developed. The 100 MW plant is assumed to be located adjacent to the Saguaro Power Station of Arizona Public Service. The design assumes an advanced Martin Marietta two-axis tracking fresnel lens concentrator. The concentrators are arrayed in 5 MW subfields, each with its own power conditioning unit. The photovoltaic plant output is connected to the existing 115 kV switchyard. The site specific design allows detailed cost estimates for engineering, site preparation, and installation. Collector and power conditioning costs have been treated parametrically.

  7. A Cost- Effective Design of Reversible Programmable Logic Array

    CERN Document Server

    Singla, Pradeep; 10.5120/5619-7911

    2012-01-01

    In the recent era, Reversible computing is a growing field having applications in nanotechnology, optical information processing, quantum networks etc. In this paper, the authors show the design of a cost effective reversible programmable logic array using VHDL. It is simulated on xilinx ISE 8.2i and results are shown. The proposed reversible Programming logic array called RPLA is designed by MUX gate [10] & Feynman gate for 3- inputs, which is able to perform any reversible 3- input logic function or Boolean function. Furthermore the quantized analysis with camparitive finding is shown for the realized RPLA against the existing one. The result shows improvement in the quantum cost and total logical caculation in proposed RPLA.

  8. An analytical filter design method for guided wave phased arrays

    Science.gov (United States)

    Kwon, Hyu-Sang; Kim, Jin-Yeon

    2016-12-01

    This paper presents an analytical method for designing a spatial filter that processes the data from an array of two-dimensional guided wave transducers. An inverse problem is defined where the spatial filter coefficients are determined in such a way that a prescribed beam shape, i.e., a desired array output is best approximated in the least-squares sense. Taking advantage of the 2π-periodicity of the generated wave field, Fourier-series representation is used to derive closed-form expressions for the constituting matrix elements. Special cases in which the desired array output is an ideal delta function and a gate function are considered in a more explicit way. Numerical simulations are performed to examine the performance of the filters designed by the proposed method. It is shown that the proposed filters can significantly improve the beam quality in general. Most notable is that the proposed method does not compromise between the main lobe width and the sidelobe levels; i.e. a narrow main lobe and low sidelobes are simultaneously achieved. It is also shown that the proposed filter can compensate the effects of nonuniform directivity and sensitivity of array elements by explicitly taking these into account in the formulation. From an example of detecting two separate targets, how much the angular resolution can be improved as compared to the conventional delay-and-sum filter is quantitatively illustrated. Lamb wave based imaging of localized defects in an elastic plate using a circular array is also presented as an example of practical applications.

  9. Solar cell array design handbook - The principles and technology of photovoltaic energy conversion

    Science.gov (United States)

    Rauschenbach, H. S.

    1980-01-01

    Photovoltaic solar cell array design and technology for ground-based and space applications are discussed from the user's point of view. Solar array systems are described, with attention given to array concepts, historical development, applications and performance, and the analysis of array characteristics, circuits, components, performance and reliability is examined. Aspects of solar cell array design considered include the design process, photovoltaic system and detailed array design, and the design of array thermal, radiation shielding and electromagnetic components. Attention is then given to the characteristics and design of the separate components of solar arrays, including the solar cells, optical elements and mechanical elements, and the fabrication, testing, environmental conditions and effects and material properties of arrays and their components are discussed.

  10. VizieR Online Data Catalog: Spectroscopy of main-belt Ch/Cgh-type asteroids (Vernazza+, 2016)

    Science.gov (United States)

    Vernazza, P.; Marsset, M.; Beck, P.; Binzel, R. P.; Birlan, M.; Cloutis, E. A.; DeMeo, F. E.; Dumas, C.; Hiroi, T.

    2016-09-01

    We conducted an extensive spectroscopic survey in the near-infrared range of 70 main-belt Ch/Cgh-type asteroids and 4 Ch/Cgh-type families and combined these measurements with available visible wavelength spectra. New data presented here are near-infrared asteroid spectral measurements for Ch- and Cgh-type asteroids from 0.7-2.5μm obtained using SpeX, the low- to medium-resolution near-IR spectrograph and imager on the 3m NASA InfraRed Telescope Facility (IRTF) located on Mauna Kea, HI. Observing runs were conducted remotely primarily from the Observatory of Paris-Meudon, France between 2010 April and 2012 January. The spectrograph SpeX, combined with a 0.8*15arcsec slit, was used in the low-resolution prism mode for acquisition of the spectra in the 0.7-2.5μm wavelength range. In order to monitor the high luminosity and variability of the sky in the near-IR, the telescope was moved along the slit during the acquisition of the data so as to obtain a sequence of spectra located at two different positions (A and B) on the array. In addition, we complemented our data set with additional near-infrared spectra retrieved from the Small Main-Belt Asteroid Spectroscopic Survey (SMASS) database (http://smass.mit.edu/). Combining these near-infrared measurements with available visible wavelength spectra (Bus, 1999PhDT........50B; Lazzaro et al., 2004Icar..172..179L) allows for the first time an extensive visible and near-infrared (VNIR) spectral database of main-belt Ch and Cgh types with D>45km (78% or 49/63 of all Ch and Cgh types listed in SMASS; see Table1). (1 data file).

  11. Guided Wave Annular Array Sensor Design for Improved Tomographic Imaging

    Science.gov (United States)

    Koduru, Jaya Prakash; Rose, Joseph L.

    2009-03-01

    Guided wave tomography for structural health monitoring is fast emerging as a reliable tool for the detection and monitoring of hotspots in a structure, for any defects arising from corrosion, crack growth etc. To date guided wave tomography has been successfully tested on aircraft wings, pipes, pipe elbows, and weld joints. Structures practically deployed are subjected to harsh environments like exposure to rain, changes in temperature and humidity. A reliable tomography system should take into account these environmental factors to avoid false alarms. The lack of mode control with piezoceramic disk sensors makes it very sensitive to traces of water leading to false alarms. In this study we explore the design of annular array sensors to provide mode control for improved structural tomography, in particular, addressing the false alarm potential of water loading. Clearly defined actuation lines in the phase velocity dispersion curve space are calculated. A dominant in-plane displacement point is found to provide a solution to the water loading problem. The improvement in the tomographic images with the annular array sensors in the presence of water traces is clearly illustrated with a series of experiments. An annular array design philosophy for other problems in NDE/SHM is also discussed.

  12. A CMOS ASIC Design for SiPM Arrays.

    Science.gov (United States)

    Dey, Samrat; Banks, Lushon; Chen, Shaw-Pin; Xu, Wenbin; Lewellen, Thomas K; Miyaoka, Robert S; Rudell, Jacques C

    2011-12-01

    Our lab has previously reported on novel board-level readout electronics for an 8×8 silicon photomultiplier (SiPM) array featuring row/column summation technique to reduce the hardware requirements for signal processing. We are taking the next step by implementing a monolithic CMOS chip which is based on the row-column architecture. In addition, this paper explores the option of using diagonal summation as well as calibration to compensate for temperature and process variations. Further description of a timing pickoff signal which aligns all of the positioning (spatial channels) pulses in the array is described. The ASIC design is targeted to be scalable with the detector size and flexible to accommodate detectors from different vendors. This paper focuses on circuit implementation issues associated with the design of the ASIC to interface our Phase II MiCES FPGA board with a SiPM array. Moreover, a discussion is provided for strategies to eventually integrate all the analog and mixed-signal electronics with the SiPM, on either a single-silicon substrate or multi-chip module (MCM).

  13. DNA copy number aberrations in breast cancer by array comparative genomic hybridization

    DEFF Research Database (Denmark)

    Li, J.; Wang, K.; Li, S.;

    2009-01-01

    Array comparative genomic hybridization (CGH) has been popularly used for analyzing DNA copy number variations in diseases like cancer. In this study, we investigated 82 sporadic samples from 49 breast cancer patients using 1-Mb resolution bacterial artificial chromosome CGH arrays. A number of h...

  14. Neutron detector array at IUAC: Design features and instrumentation developments

    Indian Academy of Sciences (India)

    P Sugathan; A Jhingan; K S Golda; T Varughese; S Venkataramanan; N Saneesh; V V Satyanarayana; S K Suman; J Antony; Ruby Shanti; K Singh; S K Saini; A Gupta; A Kothari; P Barua; Rajesh Kumar; J Zacharias; R P Singh; B R Behera; S K Mandal; I M Govil; R K Bhowmik

    2014-11-01

    The characteristics and performance of the newly commissioned neutron detector array at IUAC are described. The array consists of 100 BC501 liquid scintillators mounted in a semispherical geometry and are kept at a distance of 175 cm from the reaction point. Each detector is a 5″ × 5″ cylindrical cell coupled to 5″ diameter photomultiplier tube (PMT). Signal processing is realized using custom-designed home-made integrated electronic modules which perform neutron–gamma discrimination using zero cross timing and time-of-flight (TOF) technique. Compact custom-built high voltage power supply developed using DC–DC converters are used to bias the detector. The neutrons are recorded in coincidence with fission fragments which are detected using multi-wire proportional counters mounted inside a 1m diameter SS target chamber. The detectors and electronics have been tested off-line using radioactive sources and the results are presented.

  15. Evolutionary Design of a Phased Array Antenna Element

    Science.gov (United States)

    Globus, Al; Linden, Derek; Lohn, Jason

    2006-01-01

    We present an evolved S-band phased array antenna element design that meets the requirements of NASA's TDRS-C communications satellite scheduled for launch early next decade. The original specification called for two types of elements, one for receive only and one for transmit/receive. We were able to evolve a single element design that meets both specifications thereby simplifying the antenna and reducing testing and integration costs. The highest performance antenna found using a genetic algorithm and stochastic hill-climbing has been fabricated and tested. Laboratory results are largely consistent with simulation. Researchers have been investigating evolutionary antenna design and optimization since the early 1990s, and the field has grown in recent years its computer speed has increased and electromagnetic simulators have improved. Many antenna types have been investigated, including wire antennas, antenna arrays and quadrifilar helical antennas. In particular, our laboratory evolved a wire antenna design for NASA's Space Technology 5 (ST5) spacecraft. This antenna has been fabricated, tested, and is scheduled for launch on the three spacecraft in 2006.

  16. CryoPAF4: a cryogenic phased array feed design

    Science.gov (United States)

    Locke, Lisa; Garcia, Dominic; Halman, Mark; Henke, Doug; Hovey, Gary; Jiang, Nianhua; Knee, Lewis; Lacy, Gordon; Loop, David; Rupen, Michael; Veidt, Bruce; Wierzbicki, Ramunas

    2016-07-01

    Phased array feed (PAF) receivers used on radio astronomy telescopes offer the promise of increased fields of view while maintaining the superlative performance attained with traditional single pixel feeds (SPFs). However, the much higher noise temperatures of room temperature PAFs compared to cryogenically-cooled SPFs have prevented their general adoption. Here we describe a conceptual design for a cryogenically cooled 2.8 - 5.18 GHz dual linear polarization PAF with estimated receiver temperature of 11 K. The cryogenic PAF receiver will comprise a 140 element Vivaldi antenna array and low-noise amplifiers housed in a 480 mm diameter cylindrical dewar covered with a RF transparent radome. A broadband two-section coaxial feed is integrated within each metal antenna element to withstand the cryogenic environment and to provide a 50 ohm impedance for connection to the rest of the receiver. The planned digital beamformer performs digitization, frequency band selection, beam forming and array covariance matrix calibration. Coupling to a 15 m offset Gregorian dual-reflector telescope, cryoPAF4 can expect to form 18 overlapping beams increasing the field of view by a factor of 8x compared to a single pixel receiver of equal system temperature.

  17. Improved analysis of bacterial CGH data beyond the log-ratio paradigm

    Directory of Open Access Journals (Sweden)

    Aakra Ågot

    2009-03-01

    Full Text Available Abstract Background Existing methods for analyzing bacterial CGH data from two-color arrays are based on log-ratios only, a paradigm inherited from expression studies. We propose an alternative approach, where microarray signals are used in a different way and sequence identity is predicted using a supervised learning approach. Results A data set containing 32 hybridizations of sequenced versus sequenced genomes have been used to test and compare methods. A ROC-analysis has been performed to illustrate the ability to rank probes with respect to Present/Absent calls. Classification into Present and Absent is compared with that of a gaussian mixture model. Conclusion The results indicate our proposed method is an improvement of existing methods with respect to ranking and classification of probes, especially for multi-genome arrays.

  18. A hybrid Gerchberg-Saxton-like algorithm for DOE and CGH calculation

    Science.gov (United States)

    Wang, Haichao; Yue, Weirui; Song, Qiang; Liu, Jingdan; Situ, Guohai

    2017-02-01

    The Gerchberg-Saxton (GS) algorithm is widely used in various disciplines of modern sciences and technologies where phase retrieval is required. However, this legendary algorithm most likely stagnates after a few iterations. Many efforts have been taken to improve this situation. Here we propose to introduce the strategy of gradient descent and weighting technique to the GS algorithm, and demonstrate it using two examples: design of a diffractive optical element (DOE) to achieve off-axis illumination in lithographic tools, and design of a computer generated hologram (CGH) for holographic display. Both numerical simulation and optical experiments are carried out for demonstration.

  19. Design and optimization of a flexible arrayed eddy current sensor

    Science.gov (United States)

    Sun, Zhenguo; Cai, Dong; Zou, Cheng; Zhang, Wenzeng; Chen, Qiang

    2017-04-01

    The inspection of the hollow axle inner surfaces is a key process to guarantee the safety of high-speed trains. A novel flexible arrayed eddy current sensor was developed to improve the reliability of the non-destructive testing of the hollow axle inner surfaces, whose main innovative aspect was the new design of excitation/sensing traces to achieve a differential and arrayed configuration. Only two independent excitation traces were used in the sensor to induce eddy currents, which can be detected by 16 differential sensing elements. The lift-off effects and the influence of the excitation frequency and geometrical parameters of the proposed sensor was investigated and presented in this paper. Finite element models were built to analyze the effects of each parameter on the sensor response amplitude. Experimental validations were conducted using a representative set of sensors. Results from experiments and simulations were consistent with each other, which showed that the sensor design can substantially suppress the lift-off effects and modifications of the studied parameters can substantially improve the sensor performance.

  20. Partial biochemical and biological characterization of purified chicken growth hormone (cGH). Isolation of cGH charge variants and evidence that cGH is phosphorylated.

    Science.gov (United States)

    Arámburo, C; Carranza, M; Sanchez, R; Perera, G

    1989-11-01

    Chicken growth hormone (cGH) was purified from frozen pituitary glands obtained from recently sacrificed broilers. Glands were homogenized in a protease inhibitor solution (0.5 mM PMSF, 50 KIU/ml aprotinin, pH 7.2); extract was taken to pH 9.0 with calcium hydroxide and the supernatant was differentially precipitated with 20% (fraction A) and 50% (fraction B) ammonium sulfate. cGH (fraction B-DE-1) was obtained in pure form from fraction B after DEAE-cellulose chromatography at pH 8.6, with a yield of 2.9 mg/g tissue. Three charge variants of cGH (Rf = 0.23, 0.30, and 0.35) could be isolated by electroelution after semipreparative nondenaturing polyacrylamide gel electrophoresis of fraction B-DE-1. These charge variants showed the same apparent molecular weight (26,300 Da) by sodium dodecyl sulfate polyacrylamide gel electrophoresis under reducing conditions. Isoelectric focusing of fraction B-DE-1 revealed two major components (pI = 7.2 and 7.4) and four minor bands (pI = 6.2, 6.7, 7.1, and 7.5). It was found that fraction B-DE-1 contained a significant amount of esterified phosphate (1 nmol PO4/3.5 nmol protein) similar to that reported previously for ovine GH. The functional integrity of the cGH obtained here was characterized by two heterologous and one homologous bioassays. High activity was shown by fraction B-DE-1 in the tibia assay (1.76 UI/mg) and in the liver ornithine decarboxylase assay (sixfold over control), both made in hypophysectomized rats; and it also stimulated lipolysis (138 and 215% at 10 and 100 ng/ml, respectively) on chicken abdominal adipose tissue explants.

  1. Design and Realization of Array Signal Processor VLSI Architecture for Phased Array System

    Directory of Open Access Journals (Sweden)

    D. Govind Rao

    2016-08-01

    Full Text Available A method for implementing an array signal processor for phased array radars. The array signal processor can receive planar array antenna inputs and can process it. It is based on the application of Adaptive Digital beam formers using FPGAs. Adaptive filter algorithm used here is Inverse Q-R Decomposition based Recursive Least Squares (IQRD-RLS [1] algorithm. Array signal processor based on FPGAs is suitable in the areas of Phased Array Radar receiver, where speed, accuracy and numerical stability are of utmost important. Using IQRD-RLS algorithm, optimal weights are calculated in much less time compared to conventional QRD-RLS algorithm. A customized multiple FPGA board comprising three Kintex-7 FPGAs is employed to implement array signal processor. The proposed architecture can form multiple beams from planar array antenna elements

  2. Structural design and analysis of a solar array substrate for a GEO satellite

    OpenAIRE

    Safak, Omer

    2013-01-01

    The aim of this thesis is the design of solar array substrate for a geostationary satellite. The design of deployable solar array substrate is realized based on the requirements which are provided by BILUZAY (Bilkent University Space Technologies Research Centre). This array is going to empower a telecommunication satellite which will be operating in a geostationary orbit during 15 years. The main work presented in this thesis consists of two principal directions: solar cell array area dimens...

  3. Design of 3x3 focusing array for heavy ion driver. Final report on CRADA

    Energy Technology Data Exchange (ETDEWEB)

    Martovetsky, N N

    2005-03-30

    This memo presents a design of a 3 x 3 quadrupole array for HIF. It contains 3 D magnetic field computations of the array build with racetrack coils with and without different shields. It is shown that it is possible to have a low error magnetic field in the cells and shield the stray fields to acceptable levels. The array design seems to be a practical solution to any size array for future multi-beam heavy ion fusion drivers.

  4. Statistical design of position-encoded microsphere arrays.

    Science.gov (United States)

    Sarder, Pinaki; Nehorai, Arye

    2011-03-01

    We propose a microsphere array device with microspheres having controllable positions for error-free target identification. We conduct a statistical design analysis to select the optimal distance between the microspheres as well as the optimal temperature. Our design simplifies the imaging and ensures a desired statistical performance for a given sensor cost. Specifically, we compute the posterior Cramér-Rao bound on the errors in estimating the unknown target concentrations. We use this performance bound to compute the optimal design variables. We discuss both uniform and sparse concentration levels of targets, and replace the unknown imaging parameters with their maximum likelihood estimates. We illustrate our design concept using numerical examples. The proposed microarray has high sensitivity, efficient packing, and guaranteed imaging performance. It simplifies the imaging analysis significantly by identifying targets based on the known positions of the microspheres. Potential applications include molecular recognition, specificity of targeting molecules, protein-protein dimerization, high throughput screening assays for enzyme inhibitors, drug discovery, and gene sequencing.

  5. Designing a Hemispherical Breast RF Coil Array for MRI

    Institute of Scientific and Technical Information of China (English)

    XU Wen-long; ZHANG Ju-cheng; WANG Zhi-kang; LI Xing-xin; LOU Hai-fang

    2015-01-01

    In this paper, an approach to the design of hemispherical breast RF coil array is proposedThe target field method is applied to find the current density distribution on the hemisphere surface, which induces a homogeneous magnetic field in a hemispherical volumeThe components of current density are expanded into Fourier series, and the highly ill-conditioned character of the linear equation related to Fourier coefficients is solved using the Tikhonov regularization method with a minimum curvature penalty functionThe winding pattern was acquired using the stream function techniqueThe results indicate that a simple winding pattern with homogeneous magnetic field can be obtained through manually selecting the penalty factor.

  6. Design optimization methods for genomic DNA tiling arrays.

    Science.gov (United States)

    Bertone, Paul; Trifonov, Valery; Rozowsky, Joel S; Schubert, Falk; Emanuelsson, Olof; Karro, John; Kao, Ming-Yang; Snyder, Michael; Gerstein, Mark

    2006-02-01

    A recent development in microarray research entails the unbiased coverage, or tiling, of genomic DNA for the large-scale identification of transcribed sequences and regulatory elements. A central issue in designing tiling arrays is that of arriving at a single-copy tile path, as significant sequence cross-hybridization can result from the presence of non-unique probes on the array. Due to the fragmentation of genomic DNA caused by the widespread distribution of repetitive elements, the problem of obtaining adequate sequence coverage increases with the sizes of subsequence tiles that are to be included in the design. This becomes increasingly problematic when considering complex eukaryotic genomes that contain many thousands of interspersed repeats. The general problem of sequence tiling can be framed as finding an optimal partitioning of non-repetitive subsequences over a prescribed range of tile sizes, on a DNA sequence comprising repetitive and non-repetitive regions. Exact solutions to the tiling problem become computationally infeasible when applied to large genomes, but successive optimizations are developed that allow their practical implementation. These include an efficient method for determining the degree of similarity of many oligonucleotide sequences over large genomes, and two algorithms for finding an optimal tile path composed of longer sequence tiles. The first algorithm, a dynamic programming approach, finds an optimal tiling in linear time and space; the second applies a heuristic search to reduce the space complexity to a constant requirement. A Web resource has also been developed, accessible at http://tiling.gersteinlab.org, to generate optimal tile paths from user-provided DNA sequences.

  7. Asterias: A Parallelized Web-based Suite for the Analysis of Expression and aCGH Data

    Directory of Open Access Journals (Sweden)

    Ramón Díaz-Uriarte

    2007-01-01

    Full Text Available The analysis of expression and CGH arrays plays a central role in the study of complex diseases, especially cancer, including finding markers for early diagnosis and prognosis, choosing an optimal therapy, or increasing our understanding of cancer development and metastasis. Asterias (http://www.asterias.info is an integrated collection of freely-accessible web tools for the analysis of gene expression and aCGH data. Most of the tools use parallel computing (via MPI and run on a server with 60 CPUs for computation; compared to a desktop or server-based but not parallelized application, parallelization provides speed ups of factors up to 50. Most of our applications allow the user to obtain additional information for user-selected genes (chromosomal location, PubMed ids, Gene Ontology terms, etc. by using clickable links in tables and/or fi gures. Our tools include: normalization of expression and aCGH data (DNMAD; converting between different types of gene/clone and protein identifi ers (IDconverter/IDClight; fi ltering and imputation (preP; finding differentially expressed genes related to patient class and survival data (Pomelo II; searching for models of class prediction (Tnasas; using random forests to search for minimal models for class prediction or for large subsets of genes with predictive capacity (GeneSrF; searching for molecular signatures and predictive genes with survival data (SignS; detecting regions of genomic DNA gain or loss (ADaCGH. The capability to send results between different applications, access to additional functional information, and parallelized computation make our suite unique and exploit features only available to web-based applications.

  8. Design of Circularly-Polarised, Crossed Drooping Dipole, Phased Array Antenna Using Genetic Algorithm Optimisation

    DEFF Research Database (Denmark)

    Larsen, Niels Vesterdal

    2007-01-01

    A printed drooping dipole array is designed and constructed. The design is based on a genetic algorithm optimisation procedure used in conjunction with the software programme AWAS. By optimising the array G/T for specific combinations of scan angles and frequencies an optimum design is obtained...

  9. Double biprism arrays design using for stereo-photography of mobile phone camera

    Science.gov (United States)

    Sun, Wen-Shing; Chu, Pu-Yi; Chao, Yu-Hao; Pan, Jui-Wen; Tien, Chuen-Lin

    2016-11-01

    Generally, mobile phone use one camera to catch the image, and it is hard to get stereo image pair. Adding a biprism array can help that get the image pair easily. So users can use their mobile phone to catch the stereo image anywhere by adding a biprism array, and if they want to get a normal image just remove it. Using biprism arrays will induce chromatic aberration. Therefore, we design a double biprism arrays to reduce chromatic aberration.

  10. Design and fabrication of multi-channel photodetector array monolithic with arrayed waveguide grating

    Science.gov (United States)

    Qian-Qian, Lv; Pan, Pan; Han, Ye; Dong-Dong, Yin; Yu-Bing, Wang; Xiao-Hong, Yang; Qin, Han

    2016-03-01

    We have provided optical simulations of the evanescently coupled waveguide photodiodes integrated with a 13-channels AWGs. The photodiode could exhibit high internal efficiency by appropriate choice of layers geometry and refractive index. Aseamless joint structure has been designed and fabricated for integrating the output waveguides of AWGs with the evanescently coupled waveguide photodiode array. The highest simulation quantum efficiency could achieve 92% when the matching layer thickness of the PD is 120 nm and the insertion length is 2 μm. The fabricated PD with 320-nm-thick matching layer and 2-μm-length insertion matching layer present a responsivity of 0.87 A/W. Project supported by the National High Technology Research and Development Program of China (Grant Nos. 2013AA031401, 2015AA016902, and 2015AA016904), the National Natural Science Foundation of China (Grant Nos. 61176053, 61274069, and 61435002), and the National Basic Research Program of China (Grant Nos. 2012CB933503 and 2013CB932904).

  11. A web server for mining Comparative Genomic Hybridization (CGH) data

    Science.gov (United States)

    Liu, Jun; Ranka, Sanjay; Kahveci, Tamer

    2007-11-01

    Advances in cytogenetics and molecular biology has established that chromosomal alterations are critical in the pathogenesis of human cancer. Recurrent chromosomal alterations provide cytological and molecular markers for the diagnosis and prognosis of disease. They also facilitate the identification of genes that are important in carcinogenesis, which in the future may help in the development of targeted therapy. A large amount of publicly available cancer genetic data is now available and it is growing. There is a need for public domain tools that allow users to analyze their data and visualize the results. This chapter describes a web based software tool that will allow researchers to analyze and visualize Comparative Genomic Hybridization (CGH) datasets. It employs novel data mining methodologies for clustering and classification of CGH datasets as well as algorithms for identifying important markers (small set of genomic intervals with aberrations) that are potentially cancer signatures. The developed software will help in understanding the relationships between genomic aberrations and cancer types.

  12. Design of a 7kw power transfer solar array drive mechanism

    Energy Technology Data Exchange (ETDEWEB)

    Sheppard, J.G.

    1982-05-01

    With the availability of the Shuttle and the European launcher, Ariane, there will be a continuing trend towards large payload satellite missions requiring high-power, high-inertia, flexible solar arrays. The need arises for a solar array drive with a large power transfer capability which can rotate these solar arrays without disturbing the satellite body pointing. The modular design of such a Solar Array Drive Mechanism (SADM) which is capable of transferring 7kW of power or more is described. Total design flexibility has been achieved, enabling different spacecraft power requirements to be accommodated within the SADM design.

  13. Lightweight, Space and Power Efficient Solar Array Drive Design Implemented within Remote Interface Unit

    Science.gov (United States)

    Kivikyto, Tatu; Laaksoen, Jyrki

    2014-08-01

    PATRIA has implemented highly educated Remote Interface Units in various ESA missions. For the Sentinel-2 and EarthCARE it was constructed also to include Solar Array Drive Electronics. The same control design as for Solar Array Drive function was also piggybacked in Magneto Torque control drives and other mission specific stepper motor drives. The purpose of this paper is to summarise and present the PATRIA Solar Array Drive Electronics design advantages.

  14. AN ALTERNATIVE APPROACH TO DESIGN AND ANALYSIS OF BROADBAND BEAMSPACE ADAPTIVE ARRAYS

    Directory of Open Access Journals (Sweden)

    A. S. SRINIVASA RAO

    2011-09-01

    Full Text Available The beamwidth of a linear array depends on number of elements in the array and frequency of the input signal. At present designing of wideband antennas and beamformers became important, in the fields of microphone arrays intended for teleconferencing, in transmitting or receiving spread spectrum signals, crip signals etc. A beamspace adaptive planar array for broadband beamforming is proposed based on the filter – and - sum beamforming technique. A detailed design method was provided for both the linear arrays and the adaptivearrays and simulation results are provided for the proposed method. Our proposed method is used to demonstrate that the beam-space adaptive array can suppress interference signals having a wide fractional bandwidth and that the array has fast convergence.

  15. Mechanical design and development of TES bolometer detector arrays for the Advanced ACTPol experiment

    CERN Document Server

    Ward, Jonathan T; Beall, James A; Choi, Steve K; Crowley, Kevin T; Devlin, Mark J; Duff, Shannon M; Gallardo, Patricio M; Henderson, Shawn W; Ho, Shuay-Pwu Patty; Hilton, Gene; Hubmayr, Johannes; Khavari, Niloufar; Klein, Jeffrey; Koopman, Brian J; Li, Dale; McMahon, Jeffrey; Mumby, Grace; Nati, Federico; Niemack, Michael D; Page, Lyman A; Salatino, Maria; Schillaci, Alessandro; Schmitt, Benjamin L; Simon, Sara M; Staggs, Suzanne T; Thornton, Robert; Ullom, Joel N; Vavagiakis, Eve M; Wollack, Edward J

    2016-01-01

    The next generation Advanced ACTPol (AdvACT) experiment is currently underway and will consist of four Transition Edge Sensor (TES) bolometer arrays, with three operating together, totaling ~5800 detectors on the sky. Building on experience gained with the ACTPol detector arrays, AdvACT will utilize various new technologies, including 150mm detector wafers equipped with multichroic pixels, allowing for a more densely packed focal plane. Each set of detectors includes a feedhorn array of stacked silicon wafers which form a spline profile leading to each pixel. This is then followed by a waveguide interface plate, detector wafer, back short cavity plate, and backshort cap. Each array is housed in a custom designed structure manufactured from high purity copper and then gold plated. In addition to the detector array assembly, the array package also encloses cryogenic readout electronics. We present the full mechanical design of the AdvACT high frequency (HF) detector array package along with a detailed look at t...

  16. Array projector design for projection on arbitrarily curved surfaces

    Science.gov (United States)

    Fischer, Stephanie; Schreiber, Peter; Riedel, Alf; Sieler, Marcel

    2015-09-01

    The micro-optical array projector is a new and innovative possibility to project patterns onto arbitrary shaped surfaces1 . In contrast to single-aperture systems the illuminance of the projected image is raised by only increasing the lateral extent of the projector while keeping the length constant. Thanks to the setup - analogous to a fly's eye condenser - we obtain a very compact design with homogenization of illumination. The images to be projected are presented as arbitrarily curved CAD-objects. Because of its complexity, the first attempt was a chief-ray backtrace implemented into a CAD-program, with the individual projectorlets modelled as pinhole cameras. With this principle one can trace the slides for several applications like the projection on perpendicular, as well as tilted and curved surfaces. Since aberrations cannot be considered with the simple CAD backtrace described above, we used the commercially available raytracer Zemax®, controlled by a macro, working in conjunction with a CADprogram for improved slide mask generation. Despite both methods, depending on the complexity of the optical system, are generating the fundamental mask data, the paper will show that there is a tradeoff between calculation time and accuracy. Based on this evaluation we will discuss further development as well as the possibility of improvement concerning the calculation methods. The different methods were investigated to determine their advantages and disadvantages. This provides the basis for the scope of application. Further we will demonstrate simulations as well as results obtained with built demonstrators.

  17. DESIGN OF AN ARRAYED WAVEGUIDE GRATINGS BASED OPTICAL PACKET SWITCH

    Directory of Open Access Journals (Sweden)

    VAIBHAV SHUKLA

    2016-12-01

    Full Text Available Optical packet switching is considered as the future of data transfer technologyin combination with middle-aged electronics. The biggest challenge encountered in optical packet switching is the lack of optical buffers for storing the contending packets. Therefore, for the contention resolution of packets, a temporary storage in terms of fiber delay lines is used. This task is accomplished by an optical packet switch. In this paper, a design modification in the AWGR (Arrayed Waveguide Grating Router is presented for improving the switch performance. The power budget analysis of the switch is also presented to estimate the sufficient power level of the switch. The obtained results clearly reveal that the architecture presented in this paper can be operated in micro-watts in comparison to the earlier optical switch which operates in milli watts regime. Finally, simulation results are presented to obtain packet loss probability and average delay. Even at the higher load of 0.6, the switch presented in this paper provides a very low loss probability (10^6 and delay remain within 2 slots.

  18. Application of Array-Based Comparative Genomic Hybridization to Pediatric Neurologic Diseases

    OpenAIRE

    2013-01-01

    Purpose Array comparative genomic hybridization (array-CGH) is a technique used to analyze quantitative increase or decrease of chromosomes by competitive DNA hybridization of patients and controls. This study aimed to evaluate the benefits and yield of array-CGH in comparison with conventional karyotyping in pediatric neurology patients. Materials and Methods We included 87 patients from the pediatric neurology clinic with at least one of the following features: developmental delay, mental r...

  19. EM design and analysis of dipole arrays on non-planar dielectric substrate

    CERN Document Server

    Singh, Hema; Jha, Rakesh Mohan

    2016-01-01

    This book presents a simple and systematic description of EM design of antenna arrays. Printed dipole antennas are known to be simple yet more efficient than wire antennas. The dielectric substrate and the presence of ground plane affect the antenna performance and the resonant frequency is shifted. This book includes the EM design and performance analysis of printed dipole arrays on planar and cylindrical substrates. The antenna element is taken as half-wave centre-fed dipole. The substrate is taken as low-loss dielectric. The effect of substrate material, ground plane, and the curvature effect is discussed. Results are presented for both the linear and planar dipole arrays. The performance of dipole array is analyzed in terms of input impedance, return loss, and radiation pattern for different configurations. The effect of curved platform (substrate and ground plane) on the radiation behaviour of dipole array is analyzed. The book explains fundamentals of EM design and analysis of dipole antenna array throu...

  20. Quasi-optical antenna-mixer-array design for terahertz frequencies

    Science.gov (United States)

    Guo, Yong; Potter, Kent A.; Rutledge, David B.

    1992-01-01

    A new quasi-optical antenna-mixer-array design for terahertz frequencies is presented. In the design, antenna and mixer are combined into an entity, based on the technology in which millimeter-wave horn antenna arrays have been fabricated in silicon wafers. It consists of a set of forward- and backward-looking horns made with a set of silicon wafers. The front side is used to receive incoming signal, and the back side is used to feed local oscillator signal. Intermediate frequency is led out from the side of the array. Signal received by the horn array is picked up by antenna probes suspended on thin silicon-oxynitride membranes inside the horns. Mixer diodes will be located on the membranes inside the horns. Modeling of such an antenna-mixer-array design is done on a scaled model at microwave frequencies. The impedance matching, RF and LO isolation, and patterns of the array have been tested and analyzed.

  1. Microcomputer array processor system. [design for electronic warfare

    Science.gov (United States)

    Slezak, K. D.

    1980-01-01

    The microcomputer array system is discussed with specific attention given to its electronic warware applications. Several aspects of the system architecture are described as well as some of its distinctive characteristics.

  2. SimArray: a user-friendly and user-configurable microarray design tool

    Directory of Open Access Journals (Sweden)

    Meadows Lisa A

    2006-03-01

    Full Text Available Abstract Background Microarrays were first developed to assess gene expression but are now also used to map protein-binding sites and to assess allelic variation between individuals. Regardless of the intended application, efficient production and appropriate array design are key determinants of experimental success. Inefficient production can make larger-scale studies prohibitively expensive, whereas poor array design makes normalisation and data analysis problematic. Results We have developed a user-friendly tool, SimArray, which generates a randomised spot layout, computes a maximum meta-grid area, and estimates the print time, in response to user-specified design decisions. Selected parameters include: the number of probes to be printed; the microtitre plate format; the printing pin configuration, and the achievable spot density. SimArray is compatible with all current robotic spotters that employ 96-, 384- or 1536-well microtitre plates, and can be configured to reflect most production environments. Print time and maximum meta-grid area estimates facilitate evaluation of each array design for its suitability. Randomisation of the spot layout facilitates correction of systematic biases by normalisation. Conclusion SimArray is intended to help both established researchers and those new to the microarray field to develop microarray designs with randomised spot layouts that are compatible with their specific production environment. SimArray is an open-source program and is available from http://www.flychip.org.uk/SimArray/.

  3. A Compact Design of Planar Array Antenna with Fractal Elements for Future Generation Applications

    DEFF Research Database (Denmark)

    Ojaroudiparchin, Naser; Shen, Ming; Pedersen, Gert F.

    2016-01-01

    In this paper, a planar phased array fractal antenna for the future fifth generation (5G) applications is presented. The proposed array antenna is designed to operate at 22 GHz. 64 patch antenna elements with coaxial-probe feeds have been used for the proposed design. The antenna elements are based...... on Vicsek fractal geometry where the third iteration patches operate over a wide bandwidth and contribute to improve the efficiency and realized gain performance. The designed planar array has more than 22 dB realized gain and -0.3 dB total efficiency when its beam is tilted to 0 degrees elevation...

  4. Deconvolution method in designing freeform lens array for structured light illumination.

    Science.gov (United States)

    Ma, Donglin; Feng, Zexin; Liang, Rongguang

    2015-02-10

    We have developed a deconvolution freeform lens array design approach to generate high-contrast structured light illumination patterns. This method constructs the freeform lens array according to the point response obtained by deconvoluting the prescribed illumination pattern with the blur response of the extended light source. This design method is more effective in designing a freeform lens array to achieve accurate structured light patterns. For a sinusoidal fringe pattern, the contrast ratio can be as high as 97%, compared to 62% achieved by the conventional ray mapping method.

  5. A design concept for an MMIC (Monolithic Microwave Integrated Circuit) microstrip phased array

    Science.gov (United States)

    Lee, Richard Q.; Smetana, Jerry; Acosta, Roberto

    1987-01-01

    A conceptual design for a microstrip phased array with monolithic microwave integrated circuit (MMIC) amplitude and phase controls is described. The MMIC devices used are 20 GHz variable power amplifiers and variable phase shifters recently developed by NASA contractors for applications in future Ka proposed design, which concept is for a general NxN element array of rectangular lattice geometry. Subarray excitation is incorporated in the MMIC phased array design to reduce the complexity of the beam forming network and the number of MMIC components required.

  6. Design and optimization of a self-deploying PV tent array

    Science.gov (United States)

    Colozza, Anthony J.

    1991-01-01

    A study was performed to design a self-deploying tent shaped PV (photovoltaic) array and optimize the design for maximum specific power. Each structural component of the design was analyzed to determine the size necessary to withstand the various forces it would be subjected to. Through this analysis the component weights were determined. An optimization was performed to determine the array dimensions and blanket geometry which produce the maximum specific power for a given PV blanket. This optimization was performed for both Lunar and Martian environmental conditions. The performance specifications for the array at both locations and with various PV blankets were determined.

  7. Taguchi Experimental Design for Cleaning PWAs with Ball Grid Arrays

    Science.gov (United States)

    Bonner, J. K.; Mehta, A.; Walton, S.

    1997-01-01

    Ball grid arrays (BGAs), and other area array packages, are becoming more prominent as a way to increase component pin count while avoiding the manufacturing difficulties inherent in processing quad flat packs (QFPs)...Cleaning printed wiring assemblies (PWAs) with BGA components mounted on the surface is problematic...Currently, a low flash point semi-aqueous material, in conjunction with a batch cleaning unit, is being used to clean PWAs. The approach taken at JPL was to investigate the use of (1) semi-aqueous materials having a high flash point and (2) aqueous cleaning involving a saponifier.

  8. Design, optimization, and analysis of a self-deploying PV tent array

    Science.gov (United States)

    Collozza, Anthony J.

    1991-01-01

    A tent shaped PV array was designed and the design was optimized for maximum specific power. In order to minimize output power variation a tent angle of 60 deg was chosen. Based on the chosen tent angle an array structure was designed. The design considerations were minimal deployment time, high reliability, and small stowage volume. To meet these considerations the array was chosen to be self-deployable, form a compact storage configuration, using a passive pressurized gas deployment mechanism. Each structural component of the design was analyzed to determine the size necessary to withstand the various forces to which it would be subjected. Through this analysis the component weights were determined. An optimization was performed to determine the array dimensions and blanket geometry which produce the maximum specific power for a given PV blanket. This optimization was performed for both lunar and Martian environmental conditions. Other factors such as PV blanket types, structural material, and wind velocity (for Mars array), were varied to determine what influence they had on the design point. The performance specifications for the array at both locations and with each type of PV blanket were determined. These specifications were calculated using the Arimid fiber composite as the structural material. The four PV blanket types considered were silicon, GaAs/Ge, GaAsCLEFT, and amorphous silicon. The specifications used for each blanket represented either present day or near term technology. For both the Moon and Mars the amorphous silicon arrays produced the highest specific power.

  9. Designing of sparse 2D arrays for Lamb wave imaging using coarray concept

    Science.gov (United States)

    Ambroziński, Łukasz; Stepinski, Tadeusz; Uhl, Tadeusz

    2015-03-01

    2D ultrasonic arrays have considerable application potential in Lamb wave based SHM systems, since they enable equivocal damage imaging and even in some cases wave-mode selection. Recently, it has been shown that the 2D arrays can be used in SHM applications in a synthetic focusing (SF) mode, which is much more effective than the classical phase array mode commonly used in NDT. The SF mode assumes a single element excitation of subsequent transmitters and off-line processing the acquired data. In the simplest implementation of the technique, only single multiplexed input and output channels are required, which results in significant hardware simplification. Application of the SF mode for 2D arrays creates additional degrees of freedom during the design of the array topology, which complicates the array design process, however, it enables sparse array designs with performance similar to that of the fully populated dense arrays. In this paper we present the coarray concept to facilitate synthesis process of an array's aperture used in the multistatic synthetic focusing approach in Lamb waves-based imaging systems. In the coherent imaging, performed in the transmit/receive mode, the sum coarray is a morphological convolution of the transmit/receive sub-arrays. It can be calculated as the set of sums of the individual sub-arrays' elements locations. The coarray framework will be presented here using a an example of a star-shaped array. The approach will be discussed in terms of beampatterns of the resulting imaging systems. Both simulated and experimental results will be included.

  10. Design and Realization of Phased Array Radar Optical Fiber Transmission System

    Institute of Scientific and Technical Information of China (English)

    HU Shan-qing; LIU Feng; LONG Teng

    2007-01-01

    One optical fiber transmission system is designed.The modularization optical fiber transmission adapters were utilized in the system,so the system structure could be flexibly scalable.The sub-array adapter and signal processor adapter were designed and realized utilizing the new field programmable gate array (FPGA) which could drive the optical transceiver.The transmission agreement was designed based on the data stream.In order to solve the signal synchronization problem of the optical fiber transmitted phased array radar,a method named synchronous clock was designed.The fiber transmission error code rate of the system was zero with an experimental transmission velocity of 800 Mbit/s.The phased array radar system has detected the airplane target,thus validated the feasibility of the design method.

  11. Design of a low-profile printed array of loaded dipoles with inherent frequency selectivity properties

    NARCIS (Netherlands)

    Cavallo, D.; Savoia, S.; Gerini, G.; Neto, A.; Galdi, V.

    2011-01-01

    This work presents the design of a low-profile array of printed dipoles with inherent filtering properties for radar applications. The antenna and the band-pass filter are integrated in a single module, which is small enough to fit within the array unit cell (with period of about 0.4 ? at the highes

  12. Design considerations for arrays of MMCs for X-ray astronomy

    Energy Technology Data Exchange (ETDEWEB)

    Enss, C. E-mail: Christian_Enss@Brown.edu; Fleischmann, A.; Bandler, S.R.; Stevenson, T.R.; Seidel, G.M

    2004-03-11

    There are a number of substantially different ways of fabricating arrays of metallic magnetic calorimeters (MMCs). We discuss different designs and readout schemes and comment on the requirements, advantages and disadvantages of specific MMC arrays. In particular, we address the problems of thermal and inductive cross-talk, thermalization times, heat dissipation, layout and suitable SQUID readout techniques.

  13. Optimized design and assessment of whole genome tiling arrays.

    NARCIS (Netherlands)

    Graf, S.; Nielsen, F.G.G.; Kurtz, S.; Huynen, M.A.; Birney, E.; Stunnenberg, H.G.; Flicek, P.

    2007-01-01

    MOTIVATION: Recent advances in microarray technologies have made it feasible to interrogate whole genomes with tiling arrays and this technique is rapidly becoming one of the most important high-throughput functional genomics assays. For large mammalian genomes, analyzing oligonucleotide tiling arra

  14. A head and neck hyperthermia applicator: Theoretical antenna array design

    NARCIS (Netherlands)

    Paulides, M.M.; Bakker, J.F.; Zwamborn, A.P.M.; Rhoon, G.C. van

    2007-01-01

    Purpose: Investigation into the feasibility of a circular array of dipole antennas to deposit RF-energy centrally in the neck as a function of: 1) patient positioning, 2) antenna ring radius, 3) number of antenna rings, 4) number of antennas per ring and 5) distance between antenna rings. Materials

  15. A head and neck hyperthermia applicator: Theoretical antenna array design

    NARCIS (Netherlands)

    M.M. Paulides (Margarethus); J.F. Bakker (Jurriaan); A.P.M. Zwamborn; G.C. van Rhoon (Gerard)

    2007-01-01

    textabstractPurpose: Investigation into the feasibility of a circular array of dipole antennas to deposit RF-energy centrally in the neck as a function of: (1) patient positioning, (2) antenna ring radius, (3) number of antenna rings, (4) number of antennas per ring and (5) distance between antenna

  16. Mechanical Design and Development of TES Bolometer Detector Arrays for the Advanced ACTPol Experiment

    Science.gov (United States)

    Ward, Jonathan T.; Austermann, Jason; Beall, James A.; Choi, Steve K.; Crowley, Kevin T.; Devlin, Mark J.; Duff, Shannon M.; Gallardo, Patricio M.; Henderson, Shawn W.; Ho, Shuay-Pwu Patty; Hilton, Gene; Hubmayr, Johannes; Khavari, Niloufar; Klein, Jeffrey; Koopman, Brian J.; Li, Dale; McMahon, Jeffrey; Mumby, Grace; Nati, Federico; Wollack, Edward J.

    2016-01-01

    The next generation Advanced ACTPol (AdvACT) experiment is currently underway and will consist of four Transition Edge Sensor (TES) bolometer arrays, with three operating together, totaling 5800 detectors on the sky. Building on experience gained with the ACTPol detector arrays, AdvACT will utilize various new technologies, including 150 mm detector wafers equipped with multichroic pixels, allowing for a more densely packed focal plane. Each set of detectors includes a feedhorn array of stacked silicon wafers which form a spline pro le leading to each pixel. This is then followed by a waveguide interface plate, detector wafer, back short cavity plate, and backshort cap. Each array is housed in a custom designed structure manufactured from high purity copper and then gold plated. In addition to the detector array assembly, the array package also encloses cryogenic readout electronics. We present the full mechanical design of the AdvACT high frequency (HF) detector array package along with a detailed look at the detector array stack assemblies. This experiment will also make use of extensive hardware and software previously developed for ACT, which will be modi ed to incorporate the new AdvACT instruments. Therefore, we discuss the integration of all AdvACT arrays with pre-existing ACTPol infrastructure.

  17. Design and Analysis of Thinned Array Pattern Reconfigurable Antenna to Enlarge the Scanning Range

    Directory of Open Access Journals (Sweden)

    Zhangjing Wang

    2016-01-01

    Full Text Available A novel thinned array with symmetric distribution along the array center is proposed in this paper. The proposed symmetric thinned array is based on the theory of unequally spaced array and the amplitude of each element in the array can be changed by introducing the weighted function. The pattern of the proposed array can be properly adjusted by changing the weighted function and the amplitude of the weighted factor, which obviously releases new degrees of freedom in array design. It has advantages such as low side lobe level (SLL in the visible region, no grating lobes, and low nearby side lobe level (NSL, which has good potential for wide-angle scanning. Both simulation and experiment have been done; the experiment results show that, by applying this novel symmetric thinned array with pattern reconfigurable quasi-Yagi antenna, the scanning range of the array is −70°~70° in H-plane with SLL almost −10 dB below the maximum of the main beam. The 3 dB beam-width coverage is −86°~86°, which means that the proposed array can realize the entire upper-space beam coverage and restrain the SLL at the same time.

  18. Near-unity broadband absorption designs for semiconducting nanowire arrays via localized radial mode excitation.

    Science.gov (United States)

    Fountaine, Katherine T; Kendall, Christian G; Atwater, Harry A

    2014-05-05

    We report design methods for achieving near-unity broadband light absorption in sparse nanowire arrays, illustrated by results for visible absorption in GaAs nanowires on Si substrates. Sparse (unity absorption at wire resonant wavelengths due to coupling into 'leaky' radial waveguide modes of individual wires and wire-wire scattering processes. From a detailed conceptual development of radial mode resonant absorption, we demonstrate two specific geometric design approaches to achieve near unity broadband light absorption in sparse nanowire arrays: (i) introducing multiple wire radii within a small unit cell array to increase the number of resonant wavelengths, yielding a 15% absorption enhancement relative to a uniform nanowire array and (ii) tapering of nanowires to introduce a continuum of diameters and thus resonant wavelengths excited within a single wire, yielding an 18% absorption enhancement over a uniform nanowire array.

  19. Proceedings of the Flat-Plate Solar Array Project Research Forum on the Design of Flat-Plate Photovoltaic Arrays for Central Stations

    Science.gov (United States)

    The Flat Plate Solar Array Project, focuses on advancing technologies relevant to the design and construction of megawatt level central station systems. Photovoltaic modules and arrays for flat plate central station or other large scale electric power production facilities require the establishment of a technical base that resolves design issues and results in practical and cost effective configurations. Design, qualification and maintenance issues related to central station arrays derived from the engineering and operating experiences of early applications and parallel laboratory reserch activities are investigated. Technical issues are examined from the viewpoint of the utility engineer, architect/engineer and laboratory researcher. Topics on optimum source circuit designs, module insulation design for high system voltages, array safety, structural interface design, measurements, and array operation and maintenance are discussed.

  20. Study of improved ray tracing parallel algorithm for CGH of 3D objects on GPU

    Science.gov (United States)

    Cong, Bin; Jiang, Xiaoyu; Yao, Jun; Zhao, Kai

    2014-11-01

    An improved parallel algorithm for holograms of three-dimensional objects was presented. According to the physical characteristics and mathematical properties of the original ray tracing algorithm for computer generated holograms (CGH), using transform approximation and numerical analysis methods, we extract parts of ray tracing algorithm which satisfy parallelization features and implement them on graphics processing unit (GPU). Meanwhile, through proper design of parallel numerical procedure, we did parallel programming to the two-dimensional slices of three-dimensional object with CUDA. According to the experiments, an effective method of dealing with occlusion problem in ray tracing is proposed, as well as generating the holograms of 3D objects with additive property. Our results indicate that the improved algorithm can effectively shorten the computing time. Due to the different sizes of spatial object points and hologram pixels, the speed has increased 20 to 70 times comparing with original ray tracing algorithm.

  1. Design and Performance of the ARIANNA Hexagonal Radio Array Systems

    CERN Document Server

    Barwick, S W; Besson, D Z; Cheim, E; Duffin, T; Hanson, J C; Klein, S R; Kleinfelder, S A; Prakash, T; Piasecki, M; Ratzlaff, K; Reed, C; Roumi, M; Samanta, A; Stezelberger, T; Tatar, J; Walker, J; Young, R; Zou, L

    2014-01-01

    We report on the development, installation and operation of the first three of seven stations deployed at the ARIANNA site's pilot Hexagonal Radio Array in Antarctica. The primary goal of the ARIANNA project is to observe ultra-high energy (>100 PeV) cosmogenic neutrino signatures using a large array of autonomous stations each dispersed 1 km apart on the surface of the Ross Ice Shelf. Sensing radio emissions of 100 MHz to 1 GHz, each station in the array contains RF antennas, amplifiers, 1.92 G-sample/s, 850 MHz bandwidth signal acquisition circuitry, pattern-matching trigger capabilities, an embedded CPU, 32 GB of solid-state data storage, and long-distance wireless and satellite communications. Power is provided by the sun and LiFePO4 storage batteries, and the stations consume an average of 7W of power. Operation on solar power has resulted in >=58% per calendar-year live-time. The station's pattern-trigger capabilities reduce the trigger rates to a few milli-Hertz with 4-sigma thresholds while retaining ...

  2. Novel design of multicapillary arrays for high-throughput DNA sequencing.

    Science.gov (United States)

    Tsupryk, Andriy; Gorbovitski, Michael; Kabotyanski, Evgeni A; Gorfinkel, Vera

    2006-07-01

    A novel approach to design and optimize linear multicapillary arrays (LMCAs) for high-throughput DNA sequencing is proposed. A significant increase in the number of capillary lanes is obtained due to the use of composite insertions alternately placed between working capillaries of the array and a specific combination of refractive indices of the DNA separation matrix, capillary glass, the insertions and a medium which surrounds the capillary array. Theoretical and experimental studies showed that in conjunction with a dual-side laser illumination scheme, the proposed LMCA design allows a simultaneous uniform irradiation of as many as 550 working capillaries.

  3. Resolving phase ambiguities in the calibration of redundant interferometric arrays: implications for array design

    Science.gov (United States)

    Kurien, Binoy G.; Tarokh, Vahid; Rachlin, Yaron; Shah, Vinay N.; Ashcom, Jonathan B.

    2016-10-01

    We provide new results enabling robust interferometric image reconstruction in the presence of unknown aperture piston variation via the technique of redundant spacing calibration (RSC). The RSC technique uses redundant measurements of the same interferometric baseline with different pairs of apertures to reveal the piston variation among these pairs. In both optical and radio interferometry, the presence of phase-wrapping ambiguities in the measurements is a fundamental issue that needs to be addressed for reliable image reconstruction. In this paper, we show that these ambiguities affect recently developed RSC phasor-based reconstruction approaches operating on the complex visibilities, as well as traditional phase-based approaches operating on their logarithm. We also derive new sufficient conditions for an interferometric array to be immune to these ambiguities in the sense that their effect can be rendered benign in image reconstruction. This property, which we call wrap-invariance, has implications for the reliability of imaging via classical three-baseline phase closures as well as generalized closures. We show that wrap-invariance is conferred upon arrays whose interferometric graph satisfies a certain cycle-free condition. For cases in which this condition is not satisfied, a simple algorithm is provided for identifying those graph cycles which prevent its satisfaction. We apply this algorithm to diagnose and correct a member of a pattern family popular in the literature.

  4. Fast Computation of Wideband Beam Pattern for Designing Large-Scale 2-D Arrays.

    Science.gov (United States)

    Chi, Cheng; Li, Zhaohui

    2016-06-01

    For real-time and high-resolution 3-D ultrasound imaging, the design of sparse distribution and weights of elements of a large-scale wideband 2-D array is needed to reduce hardware cost and achieve better directivity. However, due to the high time consumption of computing the wideband beam pattern, the design methods that need massive iterations have rarely been applied to design large-scale wideband 2-D arrays by directly computing the wideband beam pattern. In this paper, a fast method is proposed to realize the computation of a wideband beam pattern of arbitrary 2-D arrays in the far field in order to design large-scale wideband 2-D arrays. The proposed fast method exploits two important techniques: 1) nonuniform fast Fourier transform (FFT) and 2) short inverse FFT. Compared with the commonly used ultrasound simulator Field II, two orders of magnitude improvement in computation speed is achieved with comparable accuracy. The proposed fast method enables massive iterations of direct wideband beam pattern computation of arbitrary large-scale 2-D arrays. A design example in this paper demonstrates that the proposed fast method can help achieve better performance in designing large-scale wideband 2-D arrays.

  5. Low power and reliable SRAM memory cell and array design

    CERN Document Server

    Ishibashi, Koichiro

    2011-01-01

    Success in the development of recent advanced semiconductor device technologies is due to the success of SRAM memory cells. This book addresses various issues for designing SRAM memory cells for advanced CMOS technology. To study LSI design, SRAM cell design is the best materials subject because issues about variability, leakage and reliability have to be taken into account for the design.

  6. Predictive Array Design. A method for sampling combinatorial chemistry library space.

    Science.gov (United States)

    Lipkin, M J; Rose, V S; Wood, J

    2002-01-01

    A method, Predictive Array Design, is presented for sampling combinatorial chemistry space and selecting a subarray for synthesis based on the experimental design method of Latin Squares. The method is appropriate for libraries with three sites of variation. Libraries with four sites of variation can be designed using the Graeco-Latin Square. Simulated annealing is used to optimise the physicochemical property profile of the sub-array. The sub-array can be used to make predictions of the activity of compounds in the all combinations array if we assume each monomer has a relatively constant contribution to activity and that the activity of a compound is composed of the sum of the activities of its constitutive monomers.

  7. Solar Orbiter- Solar Array- Thermal Design for an Extreme Temperature Mission

    Science.gov (United States)

    Muller, Jens; Paarmann, Carola; Lindner, Anton; Kreutz, Martin; Oberhuttinger, Carola; Costello, Ian; Icardi, Lidia

    2014-08-01

    The Solar Orbiter mission is an interdisciplinary mission to the sun, carried out by ESA in collaboration with NASA. The spacecraft will approach the sun close to 0.28 AU. At this distance, the solar array has to be operated under high solar array inclination angles to limit the temperatures to a maximum qualification temperature of 200°C for the photo voltaic assembly (PVA). Nevertheless, extreme temperatures appear at specific locations of the solar array which require purpose-built temperature protection measures. A very specific thermal protection is needed to keep the PVA and its supporting structures within the qualified temperature range and simultaneously minimize the thermal flux into the spacecraft.This paper describes the Solar Orbiter solar array design in general and its specific thermal design in particular. It describes the interdisciplinary steps between thermal- and mechanical analysis as well as design engineering necessary to result to the different shielding methods.

  8. Antenna Array Design in MIMO Radar Using NSK Polynomial Factorization Algorithm

    Directory of Open Access Journals (Sweden)

    Shuainan Gu

    2016-01-01

    Full Text Available The work presented here is concerned with the antenna array design in collocated multiple-input multiple-output (MIMO radars. After knowing the system requirements, the antenna array design problem is formulated as a standard polynomial factorization. In addition, an algorithm based on Newton-Schubert-Kronecker (NSK polynomial factorization is proposed. The algorithm contains three steps. First, linear factors are extracted by extended Vieta theorem. Then, undermined high-order factors are confirmed with Newton interpolation and certain high-order factors should be searched for within the undermined ones. Finally, the antenna array configurations are determined according to the result of polynomial factorization. Simulations confirm the wide use of the proposed algorithm in MIMO radar antenna array design.

  9. Designing of sparse 2D arrays for Lamb wave imaging using coarray concept

    Energy Technology Data Exchange (ETDEWEB)

    Ambroziński, Łukasz, E-mail: ambrozin@agh.edu.pl; Stepinski, Tadeusz, E-mail: ambrozin@agh.edu.pl; Uhl, Tadeusz, E-mail: ambrozin@agh.edu.pl [AGH University of Science and technology, al. Mickiewicza 30, 30-059 Krakow (Poland)

    2015-03-31

    2D ultrasonic arrays have considerable application potential in Lamb wave based SHM systems, since they enable equivocal damage imaging and even in some cases wave-mode selection. Recently, it has been shown that the 2D arrays can be used in SHM applications in a synthetic focusing (SF) mode, which is much more effective than the classical phase array mode commonly used in NDT. The SF mode assumes a single element excitation of subsequent transmitters and off-line processing the acquired data. In the simplest implementation of the technique, only single multiplexed input and output channels are required, which results in significant hardware simplification. Application of the SF mode for 2D arrays creates additional degrees of freedom during the design of the array topology, which complicates the array design process, however, it enables sparse array designs with performance similar to that of the fully populated dense arrays. In this paper we present the coarray concept to facilitate synthesis process of an array’s aperture used in the multistatic synthetic focusing approach in Lamb waves-based imaging systems. In the coherent imaging, performed in the transmit/receive mode, the sum coarray is a morphological convolution of the transmit/receive sub-arrays. It can be calculated as the set of sums of the individual sub-arrays’ elements locations. The coarray framework will be presented here using a an example of a star-shaped array. The approach will be discussed in terms of beampatterns of the resulting imaging systems. Both simulated and experimental results will be included.

  10. Frequency invariant beamforming via optimal array pattern synthesis and FIR filters design

    Institute of Scientific and Technical Information of China (English)

    YAN Shefeng; MA Yuanliang

    2005-01-01

    An approach to designing time domain broadband frequency invariant beamformer via optimal array pattern synthesis and optimal FIR filters design is proposed. First, the working frequency band is decomposed into a number of narrow band frequency bins. The array weights at each frequency bin are designed via optimal array pattern synthesis methods to insure that the synthesized pattern approximates the desired one within the mainlobe area.Then, a bank of FIR filters corresponding to the input channels are designed to provide the frequency responses that approximate the array weights in the working frequency band for each sensor. Finally, each sensor feeds a FIR filter and the filter outputs are summed to produce the beam output time series. Both array pattern synthesis and FIR filters design problems are formulated as the second-order cone programming (SOCP), which can be easily solved using well-developed interior-point methods. Results of computer simulations and lake-experiment for a twelve-element semicircular array demonstrate satisfactory performance of the proposed approach.

  11. Square Kilometre Array: a concept design for Phase 1

    CERN Document Server

    Garrett, M A; Deboer, D R; Jonas, J L; Rawlings, S; Schilizzi, R T

    2010-01-01

    The SKA at mid and low frequencies will be constructed in two distinct phases, the first being a subset of the second. This document defines the main scientific goals and baseline technical concept for the SKA Phase 1 (SKA_1). The major science goals for SKA_1 will be to study the history and role of neutral Hydrogen in the Universe from the dark ages to the present-day, and to employ pulsars as probes of fundamental physics. The baseline technical concept of SKA_1 will include a sparse aperture array operating at frequencies up to 450 MHz, and an array of dishes, initially operating at frequencies up to 3 GHz but capable of 10 GHz in terms of antenna surface accuracy. An associated Advanced Instrumentation Program (AIP) allows further development of new technologies currently under investigation. Construction will take place in 2016-2019 at a total capital cost of 350M\\texteuro, including an element for contingency. The cost estimates of the SKA_1 telescope are now the subject of a more detailed and thorough...

  12. A hybrid antenna array design for 3-d direction of arrival estimation.

    Directory of Open Access Journals (Sweden)

    Najam-Us Saqib

    Full Text Available A 3-D beam scanning antenna array design is proposed that gives a whole 3-D spherical coverage and also suitable for various radar and body-worn devices in the Body Area Networks applications. The Array Factor (AF of the proposed antenna is derived and its various parameters like directivity, Half Power Beam Width (HPBW and Side Lobe Level (SLL are calculated by varying the size of the proposed antenna array. Simulations were carried out in MATLAB 2012b. The radiators are considered isotropic and hence mutual coupling effects are ignored. The proposed array shows a considerable improvement against the existing cylindrical and coaxial cylindrical arrays in terms of 3-D scanning, size, directivity, HPBW and SLL.

  13. Optimal Design of Uniform Rectangular Antenna Arrays for Strong Line-of-Sight MIMO Channels

    Directory of Open Access Journals (Sweden)

    Orten Pål

    2007-01-01

    Full Text Available We investigate the optimal design of uniform rectangular arrays (URAs employed in multiple-input multiple-output communications, where a strong line-of-sight (LOS component is present. A general geometrical model is introduced to model the LOS component, which allows for any orientation of the transmit and receive arrays, and incorporates the uniform linear array as a special case of the URA. A spherical wave propagation model is used. Based on this model, we derive the optimal array design equations with respect to mutual information, resulting in orthogonal LOS subchannels. The equations reveal that it is the distance between the antennas projected onto the plane perpendicular to the transmission direction that is of importance with respect to design. Further, we investigate the influence of nonoptimal design, and derive analytical expressions for the singular values of the LOS matrix as a function of the quality of the array design. To evaluate a more realistic channel, the LOS channel matrix is employed in a Ricean channel model. Performance results show that even with some deviation from the optimal design, we get better performance than in the case of uncorrelated Rayleigh subchannels.

  14. Design of a Compact Wideband Antenna Array for Microwave Imaging Applications

    Directory of Open Access Journals (Sweden)

    J. Puskely

    2013-12-01

    Full Text Available In the paper, wideband antenna arrays aimed at microwave imaging applications and SAR applications operating at Ka band were designed. The antenna array feeding network is realized by a low-loss SIW technology. Moreover, we have replaced the large feed network comprised of various T and Y junctions by a simple broadband network of compact size to more reduce losses in the substrate integrated waveguide and also save space on the PCB. The designed power 8-way divider is complemented by a wideband substrate integrated waveguide to a grounded coplanar waveguide transition and directly connected to the antenna elements. The measured results of antenna array are consistent with our simulation. Obtained results of the developed array demonstrated improvement compared to previously developed binary feed networks with microstrip or SIW splitters.

  15. Cost Efficient Design Approach for Reversible Programmable Logic Arrays

    Directory of Open Access Journals (Sweden)

    Md. RiazurRahman

    2016-06-01

    Full Text Available Reversible programmable logicarrays (PLA are at the heart of designing of efficient low power computers. This paper presents anefficient approach to design Reversible PLAs that maximizes the usability of garbage outputs and also reduces the number of ancilla inputs generated. The designfor proposed essentialcomponents and the architecture of reversible grid network for designing AND and EX-OR planes are also presented. Several algorithms have been proposed and presented to describe the programming interfaces in context of Reversible PLAs construction. Lastly, recent result on the trade-off between cost factors of standard benchmarkcircuits shows that the proposed design clearly outperforms the existing ones in terms various cost factors.

  16. A Parameterized Pattern-Error Objective for Large-Scale Phase-Only Array Pattern Design

    Science.gov (United States)

    2016-03-21

    for design of a reconfigurable antenna arrays by phase-only control,” in Proc. Asia-Pacific Microwave Conf., vol. 5, 2005, p. 3 pp. 15. F. Grimaccia...mainlobe. The resulting array factors are shown in Fig. 1a. They are scaled relative to the pattern of an isotropic antenna radiating the same power...Interference and Compatibility, 1997, pp. 163–166. 7. R. Kinsey, “Phased array beam spoiling technique,” in IEEE Int’l Symp. Antennas and Propagation, vol

  17. Identification and characterization of a de novo partial trisomy 10p by comparative genomic hybridization (CGH).

    Science.gov (United States)

    Benzacken, B; Lapierre, J M; Siffroi, J P; Chalvon, A; Tachdjian, G

    1998-10-01

    We report the characterization of a de novo unbalanced chromosome rearrangement by comparative genomic hybridization (CGH) in a 15-day-old child with hypotonia and dysmorphia. We describe the combined use of CGH and fluorescence in situ hybridization (FISH) to identify the origin of the additional chromosomal material on the short arm of chromosome 6. Investigation with FISH revealed that the excess material was not derived from chromosome 6. Identification of unknown unbalanced aberrations that could not be identified by traditional cytogenetics procedures is possible by CGH analysis. Visual analysis of digital images from CGH-metaphase spreads revealed a predominantly green signal on the telomeric region of chromosome 10p. After quantitative digital ratio imaging of 10 CGH-metaphase spreads, a region of gain was found in the chromosome band 10p14-pter. The CGH finding was confirmed by FISH analysis, using a whole chromosome 10 paint probe. These results show the usefulness of CGH for a rapid characterization of de novo unbalanced translocation, unidentifiable by karyotype alone.

  18. Design, Build, and Testing of TacSat Thin Film Solar Arrays

    OpenAIRE

    Zuckermandel, J William; Enger, Scott; Gupta, Neeraj

    2006-01-01

    MicroSat Systems, Inc. (MSI) has developed a low cost, lightweight, solar array system using thinfilm photovoltaic (TFPV) material to meet power generation needs for future responsive space missions. The Fold Integrated Thin Film Stiffener (FITS) is the deployment portion of the system. FITS is an integrated, passively deployed solar array structure designed specifically for TFPV, however a variety of photovoltaic (PV) options can be utilized by using the FITS deployment technology. FITS exte...

  19. Optimal design of low-density SNP arrays for genomic prediction: algorithm and applications

    Science.gov (United States)

    Low-density (LD) single nucleotide polymorphism (SNP) arrays provide a cost-effective solution for genomic prediction and selection, but algorithms and computational tools are needed for their optimal design. A multiple-objective, local optimization (MOLO) algorithm was developed for design of optim...

  20. Magnetic design consideration of a Magnetic Lead Screw with Halbach Array

    DEFF Research Database (Denmark)

    Holm, Rasmus Koldborg; Berg, Nick Ilsø; Rasmussen, Peter Omand

    This paper presents the novel design of a Magnetic Lead Screw (MLS) with magnetic thread of Halbach Arrays. The MLS where designed and build, tests indicated a stall force which where 12 % lower than calculated in 3D FE. This is explained by demagnetization of the magnet during stall, the behavio...

  1. Inspection design using 2D phased array, TFM and cueMAP software

    Energy Technology Data Exchange (ETDEWEB)

    McGilp, Ailidh; Dziewierz, Jerzy; Lardner, Tim; Mackersie, John; Gachagan, Anthony [Centre for Ultrasonic Engineering, University of Strathclyde, Glasgow (United Kingdom)

    2014-02-18

    A simulation suite, cueMAP, has been developed to facilitate the design of inspection processes and sparse 2D array configurations. At the core of cueMAP is a Total Focusing Method (TFM) imaging algorithm that enables computer assisted design of ultrasonic inspection scenarios, including the design of bespoke array configurations to match the inspection criteria. This in-house developed TFM code allows for interactive evaluation of image quality indicators of ultrasonic imaging performance when utilizing a 2D phased array working in FMC/TFM mode. The cueMAP software uses a series of TFM images to build a map of resolution, contrast and sensitivity of imaging performance of a simulated reflector, swept across the inspection volume. The software takes into account probe properties, wedge or water standoff, and effects of specimen curvature. In the validation process of this new software package, two 2D arrays have been evaluated on 304n stainless steel samples, typical of the primary circuit in nuclear plants. Thick section samples have been inspected using a 1MHz 2D matrix array. Due to the processing efficiency of the software, the data collected from these array configurations has been used to investigate the influence sub-aperture operation on inspection performance.

  2. Inspection design using 2D phased array, TFM and cueMAP software

    Science.gov (United States)

    McGilp, Ailidh; Dziewierz, Jerzy; Lardner, Tim; Mackersie, John; Gachagan, Anthony

    2014-02-01

    A simulation suite, cueMAP, has been developed to facilitate the design of inspection processes and sparse 2D array configurations. At the core of cueMAP is a Total Focusing Method (TFM) imaging algorithm that enables computer assisted design of ultrasonic inspection scenarios, including the design of bespoke array configurations to match the inspection criteria. This in-house developed TFM code allows for interactive evaluation of image quality indicators of ultrasonic imaging performance when utilizing a 2D phased array working in FMC/TFM mode. The cueMAP software uses a series of TFM images to build a map of resolution, contrast and sensitivity of imaging performance of a simulated reflector, swept across the inspection volume. The software takes into account probe properties, wedge or water standoff, and effects of specimen curvature. In the validation process of this new software package, two 2D arrays have been evaluated on 304n stainless steel samples, typical of the primary circuit in nuclear plants. Thick section samples have been inspected using a 1MHz 2D matrix array. Due to the processing efficiency of the software, the data collected from these array configurations has been used to investigate the influence sub-aperture operation on inspection performance.

  3. Design and simulation of a tactile display based on a CMUT array

    Science.gov (United States)

    Chouvardas, Vasilios G.; Hatalis, Miltiadis K.; Miliou, Amalia N.

    2012-10-01

    In this article, we present the design of a tactile display based on a CMUT-phased array. The array implements a 'pixel' of the display and is used to focus airborne ultrasound energy on the skin surface. The pressure field, generated by the focused ultrasound waves, is used to excite the mechanoreceptors under the skin and transmit tactile information. The results of Finite Element Analysis (FEA) of the Capacitive Micromachined Ultrasonic Transducer (CMUT) and the CMUT-phased array for ultrasound emission are presented. The 3D models of the device and the array were developed using a commercial FEA package. Modelling and simulations were performed using the parameters from the POLYMUMPS surface micromachining technology from MEMSCAP. During the analysis of the phased array, several parameters were studied in order to determine their importance in the design of the tactile display. The output of the array is compared with the acoustic intensity thresholds in order to prove the feasibility of the design. Taking into account the density of the mechanoreceptors in the skin, we conclude that there should be at least one receptor under the excitation area formed on the skin.

  4. CPV semi-dense array design for dish and tower collectors

    Science.gov (United States)

    Hayden, Herb; Thomas, Paul; Fette, Nicholas; Farkas, Zoltan; Bading, Michael; Stone, Bradley; Miner, Mark; Stickroth, Oliver; Bagewadi, Nakul; Romero, Memo; Sonuparlak, Birol; Eichholz, Rainer; Ziegler, Michael; Pawlowski, Edgar

    2012-10-01

    SST is developing a new Dish CPV dense array system that overcomes the flux uniformity requirement of previous designs. The ability to operate without flux uniformity relaxes the precision requirements of primary collector optics and eliminates homogenizing optics previously required for dense array CPV. Array design can be configured for dish and tower/heliostat systems developed for thermal CSP applications. The design uses industry standard CPV cells and manufacturing materials and methods for minimum cost and high reliability. Nominal input flux to the array for full power is about 250 suns. Internal array optics increase flux to the cells to about 1200 suns. Linear optics provide additional concentration, permit novel use of commercial glass production methods and facilitate power collection design that is integrated with dynamic power conversion and maximum power point tracking (MPPT). Efficient power hybrid packaging methods are used along with advanced liquid cooling "cold-plate" thermal management. Byproduct "waste heat" can be provided for on-site CHP use. We report on the design approach and status of development with the beginning of on-sun alpha testing of the first of 50 kW of CPV modules being produced.

  5. Application of conformal map theory for design of 2-D ultrasonic array structure for NDT imaging application: a feasibility study.

    Science.gov (United States)

    Ramadas, Sivaram N; Jackson, Joseph C; Dziewierz, Jerzy; O'Leary, Richard; Gachagan, Anthony

    2014-03-01

    Two-dimensional ultrasonic phased arrays are becoming increasingly popular in nondestructive evaluation (NDE). Sparse array element configurations are required to fully exploit the potential benefits of 2-D phased arrays. This paper applies the conformal mapping technique as a means of designing sparse 2-D array layouts for NDE applications. Modeling using both Huygens' field prediction theory and 2-D fast Fourier transformation is employed to study the resulting new structure. A conformal power map was used that, for fixed beam width, was shown in simulations to have a greater contrast than rectangular or random arrays. A prototype aperiodic 2-D array configuration for direct contact operation in steel, with operational frequency ~3 MHz, was designed using the array design principle described in this paper. Experimental results demonstrate a working sparse-array transducer capable of performing volumetric imaging.

  6. 相控阵雷达用阵面电源的结构设计%Structure Design of a Array Power Supply for Phased array Radar

    Institute of Scientific and Technical Information of China (English)

    邵奎武; 王长瑞; 肖竑

    2015-01-01

    针对某相控阵雷达用阵面电源,提出了全新设计思路,先进行概念设计,再利用ANSYS、FloEFD有限元分析软件进行力学和热仿真验证,在此基础上对阵面电源进行优化设计。结果表明,阵面电源结构减重28%,结构设计和热设计满足要求。采用此方法可有效降低设计时间及差错,实现电源的快速化、轻量化设计。%In this paper,the new design idea for array power supply of phased array radar was proposed. Firstly,conceptual structure was designed. Secondly,dynamic simulation and thermal simulation were used to verify the conceptual design results by ANSYS and FloEFD finite elements analysis software, and on this basis,optimization design of array power supply was made.The result indicates that 28% weight loss of structure for array power supply is achieved.The structure and thermal design of array power supply meet the demands.The design time and error are reduced by this method.The rapid product design and light weight design of array power supply are realized.

  7. Effusive Atomic Oven Nozzle Design Using a Microcapillary Array

    CERN Document Server

    Senaratne, Ruwan; Geiger, Zachary A; Fujiwara, Kurt M; Lebedev, Vyacheslav; Weld, David M

    2014-01-01

    We present a simple and inexpensive design for a multichannel effusive oven nozzle which provides improved atomic beam collimation and thus extended oven lifetimes. Using this design we demonstrate an atomic lithium source suitable for trapped-atom experiments. At a nozzle temperature of 525$^{\\circ}$C the total atomic beam flux directly after the nozzle is $1.2 \\times 10^{14}$ atoms per second with a peak beam intensity greater than $5.0 \\times 10^{16}$ atoms per second per steradian. This suggests an oven lifetime of several centuries of continuous operation.

  8. Solar cell submodule design facilitates assembly of lightweight arrays

    Science.gov (United States)

    Yasui, R. K.

    1966-01-01

    Solar cell submodules with bus bars that leave tabs along one end of the submodule and wires with raised portions along the other end are assembled by interlocking the tabs and wires of adjacent submodules. This structural design is lightweight and reliable and requires no metallic substructure.

  9. UWB Array Design Using Variable Zo Technology and Central Force Optimization

    CERN Document Server

    Formato, Richard A

    2011-01-01

    This note applies Variable Zo technology to the design of an Ultra Wideband (UWB) Yagi-Uda array optimized using Central Force Optimization. Variable Zo is a novel and proprietary approach to antenna design and optimization that treats the feed system characteristic impedance, Zo, as a design variable instead of a fixed design parameter as is traditionally done. Variable Zo is applicable to any antenna design or optimization methodology, and using it will generally produce better antenna designs across any user-specified set of performance objectives.

  10. A Design of ABC95 Array Computer Multi-function Interconnection Chips

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    ABC95 array computer is a multi-function network computer based on FPGA technology. A notable feature of ABC95 array computer is the support of complex interconnection, which determines that the computer must have enough I/O band and flexible communications between Pes. The authors designed the interconnecting network chips of ABC95 and realized a form of multi-function interconnection. The multi-function interconnecting network supports conflict-free access from processors to memory matrix and the MESH network of enhanced processors to processor communications. The design scheme has been proved feasible by experiment.

  11. Experimental Tests of UltraFlex Array Designs in Low Earth Orbital and Geosynchronous Charging Environments

    Science.gov (United States)

    Galofaro, Joel T.; Vayner, Boris V.; Hillard, Grover B.

    2011-01-01

    The present ground based investigations give the first definitive look describing the expected on-orbit charging behavior of Orion UltraFlex array coupons in the Low Earth Orbital and Geosynchronous Environments. Furthermore, it is important to note that the LEO charging environment also applies to the International Space Station as well as to the lunar mission charging environments. The GEO charging environment includes the bounding case for all lunar orbital and lunar surface mission environments. The UltraFlex thin film photovoltaic array technology has been targeted to become the sole power system for life support and on-orbit power for the manned Aires Crew Exploration Vehicle. It is therefore, crucial to gain an understanding of the complex charging behavior to answer some of the basic performance and survivability issues in an attempt to ascertain that a single UltraFlex array design will be able to cope with the projected worst case LEO and GEO charging environments. Testing was limited to four array coupons, two coupons each from two different array manufactures, Emcore and Spectrolab. The layout of each array design is identical and varies only in the actual cell technology used. The individual array cells from each manufacturer have an antireflection layered coating and come in two different varieties either uncoated (only AR coating) or coated with a thin conducting ITO layer. The LEO Plasma tests revealed that all four coupons passed the arc threshold -120 V bias tests. GEO electron gun charging tests revealed that only front side area of ITO coated coupons passed tests. Only the Emcore AR array passed backside Stage 2 GEO Tests.

  12. Second-generation photovoltaic-concentrator-array design

    Energy Technology Data Exchange (ETDEWEB)

    Broadbent, S.; Baumann, J.E.; Heller, B.W.; Hughes, D.J.; Marshall, L.S.; Semma, R.P.; Stegeman, R.E.

    1982-12-01

    Martin Marietta Corporation's design of a second generation concentrating photovoltaic module is described. The passively cooled 13-kg module uses 2 columns of 7 point focus Fresnel lenses that are each 20.7 cm by 20.7 cm, and 14 planar junction silicon cells. The geometric concentration is 84X. Martin Marietta fabricated five prototype modules and shipped three to Sandia for testing. The modules' peak efficiency was 14.1% which is the highest to date for a module using silicon cells.

  13. Design, Analysis and Implementation of An Area-Efficient Beam-Steerable Sub-Terahertz Imaging Receiver Array Architecture

    OpenAIRE

    Caster II, Francis

    2014-01-01

    Multi-pixel passive imaging arrays are presently fabricated in expensive processes with low integration levels. Imaging arrays designed in inexpensive processes with higher levels of integration would result in cheaper larger arrays. The objective of this work is twofold: 1) to develop a highly integrated silicon-based passive imaging receiver integrating the entire receiver frontend from antenna to detector; and 2) to develop a highly scalable architecture for use in focal plane arrays of ar...

  14. Design of Frequency Tunable Compact Antenna and Millimeter to Terahertz Array Antennas

    Science.gov (United States)

    Damman, Rafid Noel

    As increased bandwidth demands continue to rise and overly crowded existing bands need be relieved, the study of frequency tunable and higher frequency array antennas is needed. By tuning the resonant frequency of an antenna, the bandwidth increases since the operating frequency has increased from the tuning. Also, higher frequency antenna designs are beginning to take flight to alleviate the lower bands and allow for an increase in bandwidth. Both the methods can bring a solution to the increased bandwidth demand. Thesis work begins with the design of a novel single feed planar antenna with 4G tunable bands and consistent upper LTE bands. This antenna is simulated using full wave analysis tool, fabricated and measured. This antenna shows near omni-directional radiation pattern exhibiting gain levels from -4.25dBi in the lower band to 2.69dBi in the upper band. The impedance matching for the lower band can be tuned from 690 MHz - 970 MHz while the higher band is consistently present between 1.29 GHz - 2.05 GHz, both based on S 11 ≤ - 6dBi. To begin the stepping stone for higher frequency planar array antenna designs, first an 8x8 array antenna is designed in the Ka band. The impedance matching for this design is measured 28.34 GHz - 32.09 GHz having fractional bandwidth of 12.41% based on S11 ? - 10dB. This array antenna was fabricated and experimentally verified for its impedance matching and radiation performances. Next, a 4x4 antenna array is designed for operation in the 5G wireless band and using 0.07mm quartz material. The design has matching band from 53.6 GHz - 54.0 GHz having fractional bandwidth of 0.7435% based on S 11 ≤ -10dB. Finally, a 2x2 array antenna having a center frequency of 300 GHz with fractional bandwidth of 11.2% based on S11 ≤ -10dB is designed. This 2x2 array antenna was also designed using 0.07mm thick quartz substrate material so as to fabricate using the photolithography method due to the limitations of the standard method of

  15. Design and analysis of an electronically steerable microstrip patch and a novel Coplanar Waveguide (CPW) fed slot antenna array

    Science.gov (United States)

    Aldossary, Hamad

    Conformal Phased Array Antennas (CPAAs) are very attractive for their high gain, low profile, and beam scanning ability while being conformal to their mounting surface. Among them are microstrip patch phased arrays and wideband slot phased arrays which are of particular significance. In this work, first the study, design, and implementation of a conformal microstrip patch phased array is presented which consists of a high gain beam scanning array implemented using microstrip delay lines controlled using GaAs SPDT switches. Then the study and design of a wideband Coplanar Waveguide (CPW)-fed slot phased array antenna is presented. In both cases the array beam scanning properties are elucidated by incorporating the measured delay line scattering parameters inside Ansys Designer simulation models and then computing and presenting their full-wave radiation characteristics.

  16. General polynomial factorization-based design of sparse periodic linear arrays.

    Science.gov (United States)

    Mitra, Sanjit K; Mondal, Kalyan; Tchobanou, Mikhail K; Dolecek, Gordana Jovanovic

    2010-09-01

    We have developed several methods of designing sparse periodic arrays based upon the polynomial factorization method. In these methods, transmit and receive aperture polynomials are selected such that their product results in a polynomial representing the desired combined transmit/receive (T/R) effective aperture function. A desired combined T/R effective aperture is simply an aperture with an appropriate width exhibiting a spectrum that corresponds to the desired two-way radiation pattern. At least one of the two aperture functions that constitute the combined T/R effective aperture function will be a sparse polynomial. A measure of sparsity of the designed array is defined in terms of the element reduction factor. We show that elements of a linear array can be reduced with varying degrees of beam mainlobe width to sidelobe reduction properties.

  17. The design and application of large area intensive lens array focal spots measurement system

    Science.gov (United States)

    Chen, Bingzhen; Yao, Shun; Yang, Guanghui; Dai, Mingchong; Wang, Zhiyong

    2014-12-01

    Concentrating Photovoltaic (CPV) modules are getting thinner and using smaller cells now days. Correspondingly, large area intensive lens arrays with smaller unit dimension and shorter focal length are wanted. However, the size and power center of lens array focal spots usually differ from the design value and are hard to measure, especially under large area situation. It is because the machining error and deformation of material of the lens array are hard to simulate in the optical design process. Thus the alignment error between solar cells and focal spots in the module assembly process will be hard to control. Under this kind of situation, the efficiency of CPV module with thinner body and smaller cells is much lower than expected. In this paper, a design of large area lens array focal spots automatic measurement system is presented, as well as its prototype application results. In this system, a four-channel parallel light path and its corresponding image capture and process modules are designed. These modules can simulate focal spots under sunlight and have the spots image captured and processed using charge coupled devices and certain gray level algorithm. Thus the important information of focal spots such as spot size and location will be exported. Motion control module based on grating scale signal and interval measurement method are also employed in this system in order to get test results with high speed and high precision on large area lens array no less than 1m×0.8m. The repeatability of the system prototype measurement is +/-10μm with a velocity of 90 spot/min. Compared to the original module assembled using coordinates from optical design, modules assembled using data exported from the prototype is 18% higher in output power, reaching a conversion efficiency of over 31%. This system and its design can be used in the focal spot measurement of planoconvex lens array and Fresnel lens array, as well as other kinds of large area lens array application

  18. Design and performance of the ULTRA 320x240 uncooled focal plane array and sensor

    Science.gov (United States)

    Herring, Robert J.; Howard, Philip E.

    1996-06-01

    The ULTRA (Uncooled, Low cost, Technology Reinvestment Alliance) Consortium, consisting of the Honeywell Technology Center of Honeywell Incorporated, the Autonetics Missile Systems Division of Rockwell International Corporation, Inframetrics Incorporated, and the New Jersey Institute of Technology, has been formally working together over the past year in an effort to develop, manufacture and sell industrial and military sensors and components incorporating silicon microbolometer uncooled focal plane array (UFPA) technology. Towards that end, Rockwell has been actively engaged in developing the UFPA component, with assistance from Honeywell, with the intention of being a merchant supplier of the UFPA. Inframetrics has been developing subsystems required to construct and characterize a prototype sensor, and NJIT is designing a Multi-Wavelength Imaging Pyrometry system around the performance of the uncooled prototype sensor. TRP Office funding administered by ARPA has been key to the significant advances made over the course of the year in this program. This paper will describe both the UFPA component specification and the prototype sensor. It will give a architectural overview of the detector array, with the anticipated performance characteristics. Multiplexer design and simulation, and array processing, will be addressed. A description of the array packaging, interface requirements, and unique design considerations will be provided. Anticipated and actual component performance will be explained and contrasted. The background of the sensor development will be presented. An overview of the camera architecture will be given, with some discussion of trade-offs in subsystem design of the sensor. Specific emphasis is placed on the radiometric evaluation of the sensor.

  19. Design of a ring resonator-based optical beam forming network for phased array receive antennas

    NARCIS (Netherlands)

    Klooster, van 't J.W.; Roeloffzen, C.G.H.; Meijerink, A.; Zhuang, L.; Marpaung, D.A.I.; Etten, van W.C.; Heideman, R.G.; Leinse, A.; Schippers, H.; Verpoorte, J.; Wintels, M.

    2008-01-01

    A novel squint-free ring resonator-based optical beam forming network (OBFN) for phased array antennas (PAA) is proposed. It is intended to provide broadband connectivity to airborne platforms via geostationary satellites. In this paper, we present the design of the OBFN and its control system. Our

  20. Software design of the ASTRI camera server proposed for the Cherenkov Telescope Array

    Science.gov (United States)

    Conforti, Vito; Trifoglio, Massimo; Gianotti, Fulvio; Malaguti, Giuseppe; Bulgarelli, Andrea; Fioretti, Valentina; Zoli, Andrea; Catalano, Osvaldo; Capalbi, Milvia; Sangiorgi, Pierluca

    2016-07-01

    The Italian National Institute for Astrophysics (INAF) is leading the ASTRI project within the ambitious Cherenkov Telescope Array (CTA), the next generation of ground-based observatories for very high energy gamma-ray astronomy. In the framework of the small sized telescopes (SST), a first goal of the ASTRI project is the realization of an end-to-end prototype in dual-mirror configuration (2M) with the camera composed of a matrix of Silicon photo-multiplier sensors managed by innovative front-end and back-end electronics. The prototype, named ASTRI SST-2M, is installed in Italy at the INAF "M.G. Fracastoro" observing station located at Serra La Nave, 1735 m a.s.l. on Mount Etna, Sicily. As a second step, the ASTRI project is focused on the implementation of a mini-array composed at least of nine ASTRI telescopes and proposed to be placed at the CTA southern site. This paper outlines the design of the camera server software that will be installed on the ASTRI mini-array. The software is based on the version installed on the ASTRI SST-2M prototype operating in a single telescope configuration. The migration from single telescope to mini-array context has required additional interfaces in order to guarantee high interoperability with other software and hardware components. In the mini-array configuration each camera communicates with its own camera server via a dedicated high rate data link. The primary goal of the camera server is to acquire the bulk data, packet by packet, without any data loss and to timestamp each packet very precisely. During array operation, the camera server receives from the SoftWare Array Trigger (SWAT) the list of science events that participate in stereo triggered events. These science events, and all others that are flagged either by the camera as interleaved calibration or by the camera server as possible single-muon events, are sent to the Array DAQ. All remaining science events will be discarded. A suitable buffer is provided to

  1. Mechanical design of a low concentration ratio solar array for a space station application

    Science.gov (United States)

    Biss, M. S.; Hsu, L.

    1983-01-01

    This paper describes a preliminary study and conceptual design of a low concentration ratio solar array for a space station application with approximately a 100 kW power requirement. The baseline design calls for a multiple series of inverted, truncated, pyramidal optical elements with a geometric concentration ratio (GCR) of 6. It also calls for low life cycle cost, simple on-orbit maintainability, 1984 technology readiness date, and gallium arsenide (GaAs) of silicon (Si) solar cell interchangeability. Due to the large area needed to produce the amount of power required for the baseline space station, a symmetrical wing design, making maximum use of the commonality of parts approach, was taken. This paper will describe the mechanical and structural design of a mass-producible solar array that is very easy to tailor to the needs of the individual user requirement.

  2. Risk assessment models in genetics clinic for array comparative genomic hybridization: Clinical information can be used to predict the likelihood of an abnormal result in patients.

    Science.gov (United States)

    Marano, Rachel M; Mercurio, Laura; Kanter, Rebecca; Doyle, Richard; Abuelo, Dianne; Morrow, Eric M; Shur, Natasha

    2013-03-01

    Array comparative genomic hybridization (aCGH) testing can diagnose chromosomal microdeletions and duplications too small to be detected by conventional cytogenetic techniques. We need to consider which patients are more likely to receive a diagnosis from aCGH testing versus patients that have lower likelihood and may benefit from broader genome wide scanning. We retrospectively reviewed charts of a population of 200 patients, 117 boys and 83 girls, who underwent aCGH testing in Genetics Clinic at Rhode Island hospital between 1 January/2008 and 31 December 2010. Data collected included sex, age at initial clinical presentation, aCGH result, history of seizures, autism, dysmorphic features, global developmental delay/intellectual disability, hypotonia and failure to thrive. aCGH analysis revealed abnormal results in 34 (17%) and variants of unknown significance in 24 (12%). Patients with three or more clinical diagnoses had a 25.0% incidence of abnormal aCGH findings, while patients with two or fewer clinical diagnoses had a 12.5% incidence of abnormal aCGH findings. Currently, we provide families with a range of 10-30% of a diagnosis with aCGH testing. With increased clinical complexity, patients have an increased probability of having an abnormal aCGH result. With this, we can provide individualized risk estimates for each patient.

  3. Proceedings of the Flat-Plate Solar Array Project Research Forum on the design of flat-plate photovoltaic arrays for central stations

    Energy Technology Data Exchange (ETDEWEB)

    None

    1983-01-01

    The Flat-Plate Solar Array Project, managed by the Jet Propulsion Laboratory for the US Department of Energy, has focused on advancing technologies relevant to the design and construction of megawatt-level central-station systems. Photovoltaic modules and arrays for flat-plate central-station or other large-scale electric power production facilities require the establishment of a technical base that resolves design issues and results in practical and cost-effective configurations. The Central Station Research Forum addressed design, qualification and maintenance issues related to central-station arrays derived from the engineering and operating experiences of early applications and parallel laboratory research activities. Technical issues were examined from the viewpoint of the utility engineer, architect-engineer and laboratory researcher. The forum included presentations on optimum source-circuit designs, module insulation design for high system voltages, array safety, structural interface design, measurements and array operation and maintenance. The Research Forum focused on current capabilities as well as design difficulties requiring additional technological thrusts and/or continued research emphasis. Session topic summaries highlighting major points during group discussions, identifying promising technical approaches or areas of future research, are presented.

  4. NASA-STD-4005 and NASA-HDBK-4006, LEO Spacecraft Solar Array Charging Design Standard

    Science.gov (United States)

    Ferguson, Dale C.

    2007-01-01

    Two new NASA Standards are now official. They are the NASA LEO Spacecraft Charging Design Standard (NASA-STD-4005) and the NASA LEO Spacecraft Charging Design Handbook (NASA-HDBK-4006). They give the background and techniques for controlling solar array-induced charging and arcing in LEO. In this paper, a brief overview of the new standards is given, along with where they can be obtained and who should be using them.

  5. Design and Simulation of a Programmable Memory/Multiplier Array Using G4-FET Technology

    Science.gov (United States)

    2007-07-01

    Arrays........................ 12 4.2 Primitive Cell Design and Configuration ......................................................... 13 4.3...CMOS devices. 4.2 Primitive Cell Design and Configuration Using the cell architecture of the G4-FET adder as a guide, we developed metal mask...layout of the primitive cell template, as well as the cell configured as a majority gate and as 2 memory cells. The template contains the mask

  6. Design and fabrication of ultrasmall arrayed waveguide grating multiplexers based on Si nanowire waveguides

    Institute of Scientific and Technical Information of China (English)

    DAI Dao-xin; LIU Liu; ZHEN Sheng; HE Sai-ling

    2007-01-01

    The large refractive index difference between Si and SiO2 makes it possible to realize ultrasmall photonic integrated circuits. A 5×5 ultracompact arrayed waveguide grating multiplexer based on 500×250 nm Si nanowire waveguides is designed and fabricated by using the technologies of E-beam writing and amorphous-Si deposition. The measured channel spacing is about 1.5 nm (close to the design value) and the channel crosstalk is about -8 dB.

  7. An array microscope for ultrarapid virtual slide processing and telepathology. Design, fabrication, and validation study.

    Science.gov (United States)

    Weinstein, Ronald S; Descour, Michael R; Liang, Chen; Barker, Gail; Scott, Katherine M; Richter, Lynne; Krupinski, Elizabeth A; Bhattacharyya, Achyut K; Davis, John R; Graham, Anna R; Rennels, Margaret; Russum, William C; Goodall, James F; Zhou, Pixuan; Olszak, Artur G; Williams, Bruce H; Wyant, James C; Bartels, Peter H

    2004-11-01

    This paper describes the design and fabrication of a novel array microscope for the first ultrarapid virtual slide processor (DMetrix DX-40 digital slide scanner). The array microscope optics consists of a stack of three 80-element 10 x 8-lenslet arrays, constituting a "lenslet array ensemble." The lenslet array ensemble is positioned over a glass slide. Uniquely shaped lenses in each of the lenslet arrays, arranged perpendicular to the glass slide constitute a single "miniaturized microscope." A high-pixel-density image sensor is attached to the top of the lenslet array ensemble. In operation, the lenslet array ensemble is transported by a motorized mechanism relative to the long axis of a glass slide. Each of the 80 miniaturized microscopes has a lateral field of view of 250 microns. The microscopes of each row of the array are offset from the microscopes in other rows. Scanning a glass slide with the array microscope produces seamless two-dimensional image data of the entire slide, that is, a virtual slide. The optical system has a numerical aperture of N.A.= 0.65, scans slides at a rate of 3 mm per second, and accrues up to 3,000 images per second from each of the 80 miniaturized microscopes. In the ultrarapid virtual slide processing cycle, the time for image acquisition takes 58 seconds for a 2.25 cm2 tissue section. An automatic slide loader enables the scanner to process up to 40 slides per hour without operator intervention. Slide scanning and image processing are done concurrently so that post-scan processing is eliminated. A virtual slide can be viewed over the Internet immediately after the scanning is complete. A validation study compared the diagnostic accuracy of pathologist case readers using array microscopy (with images viewed as virtual slides) and conventional light microscopy. Four senior pathologists diagnosed 30 breast surgical pathology cases each using both imaging modes, but on separate occasions. Of 120 case reads by array microscopy

  8. Conformal Patch Antenna Arrays Design for Onboard Ship Deployment Using Genetic Algorithms

    Directory of Open Access Journals (Sweden)

    Stelios A. Mitilineos

    2013-01-01

    Full Text Available Conformal antennas and antenna arrays (arrays have become necessary for vehicular communications where a high degree of aerodynamic drag reduction is needed, like in avionics and ships. However, the necessity to conform to a predefined shape (e.g., of an aircraft’s nose directly affects antenna performance since it imposes strict constraints to the antenna array’s shape, element spacing, relative signal phase, and so forth. Thereupon, it is necessary to investigate counterintuitive and arbitrary antenna shapes in order to compensate for these constraints. Since there does not exist any available theoretical frame for designing and developing arbitrary-shape antennas in a straightforward manner, we have developed a platform combining a genetic algorithm-based design, optimization suite, and an electromagnetic simulator for designing patch antennas with a shape that is not a priori known (the genetic algorithm optimizes the shape of the patch antenna. The proposed platform is further enhanced by the ability to design and optimize antenna arrays and is intended to be used for the design of a series of antennas including conformal antennas for shipping applications. The flexibility and performance of the proposed platform are demonstrated herein via the design of a high-performance GPS patch antenna.

  9. Design and synthesis of an array of selective androgen receptor modulators.

    Science.gov (United States)

    Trump, Ryan P; Blanc, Jean-Baptiste E; Stewart, Eugene L; Brown, Peter J; Caivano, Matilde; Gray, David W; Hoekstra, William J; Willson, Timothy M; Han, Bajin; Turnbull, Philip

    2007-01-01

    We describe the design, using shape comparison and fast docking computer algorithms, and rapid parallel synthesis of a 1300 member array based on GSK7721, a 4-aminobenzonitrile androgen receptor (AR) antagonist identified by focused screening of the GSK compound collection. The array yielded 352 submicromolar and 17 subnanomolar AR agonists as measured by a cell-based reporter gene functional assay. The rapid synthesis of a large number of active compounds provided valuable information in the optimization of AR modulators, which may be useful in treating androgen deficiency in aging males.

  10. Corporate-Feed Multilayer Bow-Tie Antenna Array Design Using a Simple Transmission Line Model

    Directory of Open Access Journals (Sweden)

    S. Didouh

    2012-01-01

    Full Text Available A transmission line model is used to design corporate-fed multilayered bow-tie antennas arrays; the simulated antennas arrays are designed to resonate at the frequencies 2.4 GHz, 5 GHz, and 8 GHz corresponding to RFID, WIFI, and radars applications. The contribution of this paper consists of modeling multilayer bow-tie antenna array fed through an aperture using transmission line model. The transmission line model is simple and precise and allows taking into account the whole geometrical, electrical, and technological characteristics of the antennas arrays. The proposed transmission line model showed its interest in the design of different multilayered bow-tie antennas and predicted the correct resonance frequency for different applications in telecommunications. To validate the proposed transmission line model, the simulation results obtained are compared with those obtained by the method of moments. The results of simulations are presented and discussed. Using this transmission line approach, the resonant frequency, input impedance, and return loss can be determined simultaneously. The paper reports several simulation results that confirm the validity of the developed model. The obtained results are then presented and discussed.

  11. Compact design of a planar filtering antenna array including a frequency selective common-mode rejection module

    NARCIS (Netherlands)

    Cifola, L.; Cavallo, D.; Gerini, G.; Morini, A.

    2012-01-01

    A new compact design of a planar phased-array antenna with inherent frequency selectivity properties is presented. In previous works, starting from an array of connected dipoles, the design of a filtenna structure and a strategy for the suppression of common-mode resonances have been addressed. In t

  12. Design of Vivaldi antenna array with end-fire beam steering function for 5G mobile terminals

    DEFF Research Database (Denmark)

    Ojaroudiparchin, Naser; Shen, Ming; Pedersen, Gert F.

    2015-01-01

    This manuscript proposes a new design of phased array antenna for future fifth generation (5G) cellular communications. The proposed phased array antenna is designed on a low-cost N9000 PTFE substrate with overall size of 60×120×0.8 mm3. It consists of eight 28-GHz Vivaldi antenna elements used...

  13. Design of a Solar Motor Drive System Fed by a Direct-Connected Photovoltaic Array

    Directory of Open Access Journals (Sweden)

    AYDOGMUS, O.

    2012-08-01

    Full Text Available A solar motor pump drive system is modeled and simulated. The proposed drive system does not require any kind of energy storage system and dc-dc converter. The system is connected directly to a photovoltaic (PV array. Thus, a low cost solar system can be achieved. A vector controlled Permanent Magnet Synchronous Motor (PMSM is used as a solar motor to increase the efficiency of system. The motor is designed for a low rated voltage level about 24V. The hill climbing MPPT method is used for balanced the motor power and PV power to obtain a high efficiency. The results are performed by using MATLAB/SimPowerSystem blocks. In addition, the PV array is modeled to allow for the possibility of running as on-line adjustable in simulation environment without using lookup table. The performances of motor, MPPT and drive system are analyzed in different conditions as temperature and irradiation of PV array.

  14. Design and Implementation of a Beam Forming Network for a Phased Array Antenna

    Directory of Open Access Journals (Sweden)

    S. Devimeena

    2015-03-01

    Full Text Available This dissertation presents a beam forming network (BFN for phased array antenna-based on coherently radiating periodic structure (CORPS. The elements of CORPS are selected in such a way to obtain broad band characteristics, good return loss and good isolation between the radiating elements. These elements were arranged in such a way that the BFN naturally produces Gaussian amplitude. This methodology reduces the complexity of the conventional phased array design making it more flexible and minimizing the loss of energy inside the structure. A phase shifter design is proposed for the CORPS. The entire BFN’s sub-blocks have been designed for the frequency band of 5.925 GHz to 6.425 GHz, which find applications in communication satellite, fixed wireless systems.Defence Science Journal, Vol. 65, No. 1, January 2015, pp.46-52, DOI:http://dx.doi.org/10.14429/dsj.65.6940

  15. The design and development of a constant-speed solar array drive

    Science.gov (United States)

    Jones, H. M.; Roger, N.

    1985-01-01

    The design and development of a constant-speed solar array drive system for use in high power communications satellites is described. The relationship between continuity of motion in the solar array drive and spacecraft attitude disturbance is investigated. The selection of the system design based on the design requirements including spacecraft disturbance is discussed. The system comprises two main parts: the drive mechanism including small angle stepper motor and reduction gearing and the control electronics including ministepping drive circuits, such that a very small output step size is achieved. Factors contributing to discontinuities in motion are identified and discussed. Test methods for measurement of very small amplitudes of discontinuity at low rotational rates are described to assist in the testing of similar mechanisms.

  16. Miniature Exoplanet Radial Velocity Array (MINERVA) I. Design, Commissioning, and First Science Results

    CERN Document Server

    Swift, Jonathan J; Johnson, John A; Wright, Jason T; McCrady, Nate; Wittenmyer, Robert A; Plavchan, Peter; Riddle, Reed; Muirhead, Philip S; Herzig, Erich; Myles, Justin; Blake, Cullen H; Eastman, Jason; Beatty, Thomas G; Lin, Brian; Zhao, Ming; Gardner, Paul; Falco, Emilio; Criswell, Stephen; Nava, Chantanelle; Robinson, Connor; Sliski, David H; Hedrick, Richard; Ivarsen, Kevin; Hjelstrom, Annie; de Vera, Jon; Szentgyorgyi, Andrew

    2014-01-01

    The MINiature Exoplanet Radial Velocity Array (MINERVA) is a US-based observational facility dedicated to the discovery and characterization of exoplanets around a nearby sample of bright stars. MINERVA employs a robotic array of four 0.7 m telescopes outfitted for both high-resolution spectroscopy and photometry, and is designed for completely autonomous operation. The primary science program is a dedicated radial velocity survey and the secondary science objective is to obtain high precision transit light curves. The modular design of the facility and the flexibility of our hardware allows for both science programs to be pursued simultaneously, while the robotic control software provides a robust and efficient means to carry out nightly observations. In this article, we describe the design of MINERVA including major hardware components, software, and science goals. The telescopes and photometry cameras are characterized at our test facility on the Caltech campus in Pasadena, CA, and their on-sky performance...

  17. Monte Carlo Studies of medium-size telescope designs for the Cherenkov Telescope Array

    CERN Document Server

    Wood, M; Dumm, J; Funk, S

    2015-01-01

    We present studies for optimizing the next generation of ground-based imaging atmospheric Cherenkov telescopes (IACTs). Results focus on mid-sized telescopes (MSTs) for CTA, detecting very high energy gamma rays in the energy range from a few hundred GeV to a few tens of TeV. We describe a novel, flexible detector Monte Carlo package, FAST (FAst Simulation for imaging air cherenkov Telescopes), that we use to simulate different array and telescope designs. The simulation is somewhat simplified to allow for efficient exploration over a large telescope design parameter space. We investigate a wide range of telescope performance parameters including optical resolution, camera pixel size, and light collection area. In order to ensure a comparison of the arrays at their maximum sensitivity, we analyze the simulations with the most sensitive techniques used in the field, such as maximum likelihood template reconstruction and boosted decision trees for background rejection. Choosing telescope design parameters repre...

  18. Solar array design based on shadow analysis for increasing net energy collection in a competition vehicle

    Science.gov (United States)

    Osorio-Gómez, Gilberto; Mejía-Gutiérrez, Ricardo; Suárez-Castañeda, Nicolás; Gil-Herrera, Ana; Barrera-Velásquez, Jorge

    2015-01-01

    Photovoltaic (PV) applications such as in the architectural, automotive, and aerospace industries face design contradictions because they are expected to produce a lot of energy but are constrained by available area, surface shape, incident irradiance, shadows, and other aspects that have a negative influence on the energy produced by the solar panel. Solar competition vehicles are some of these challenging PV applications. The design of such solar arrays needs to consider efficiency evaluation in order to optimize space; it is difficult not to install solar modules in areas impacted by shadows. A design procedure for a solar array configuration based on shadow analysis for competition vehicles is presented. The principle is that shadows in moving objects can be simulated, since the vehicle, the earth and the sun are are moving in semipredictable patterns, thus net energy collection can be forecast. The case study presented is the solar array design of a vehicle that participated in the World Solar Challenge 2013. The obtained results illustrate how the employment of the procedure gives insights on important aspects to consider and also delivers qualitative and quantitative information for decision making. In addition, the experience in competition highlights some issues to be considered, modified, or improved in further vehicle designs.

  19. Design and fabrication of magnetically functionalized flexible micropillar arrays for rapid and controllable microfluidic mixing

    KAUST Repository

    Zhou, BingPu

    2015-03-25

    Magnetically functionalized PDMS-based micropillar arrays have been successfully designed, fabricated and implanted for controllable microfluidic mixing. The arrangement of PDMS micropillar arrays inside the microchannel can be flexibly controlled by an external magnetic field. As a consequence, the flow fields inside the microchannel can be regulated at will via magnetic activation conveniently. When a microchannel is implanted with such micropillar arrays, two microstreams can be mixed easily and controllably upon the simple application of an on/off magnetic signal. Mixing efficiencies based on micropillar arrays with different densities were investigated and compared. It was found that micropillar arrays with higher density (i.e. smaller pillar pitch) would render better mixing performance. Our microfluidic system is capable of generating highly reproducible results within many cycles of mixing/non-mixing conversion. We believe that the simple mixing-triggering method together with rapid and controllable mixing control will be extraordinarily valuable for various biological or chemical applications in the future. This journal is © The Royal Society of Chemistry 2015.

  20. Design of 280~GHz feedhorn-coupled TES arrays for the balloon-borne polarimeter SPIDER

    CERN Document Server

    Hubmayr, Johannes; Beall, James A; Becker, Daniel T; Benton, Steven J; Bergman, A Stevie; Bond, J Richard; Bryan, Sean; Duff, Shannon M; Duivenvoorden, Adri J; Eriksen, H K; Filippini, Jeffrey P; Fraisse, Aurelien A; Galloway, Mathew; Gambrel, Anne E; Ganga, K; Grigorian, Arpi L; Gualtieri, Riccardo; Gudmundsson, Jon E; Hartley, John W; Halpern, M; Hilton, Gene C; Jones, William C; McMahon, Jeffrey J; Moncelsi, Lorenzo; Nagy, Johanna M; Netterfield, C B; Osherson, Benjamin; Padilla, Ivan; Rahlin, Alexandra S; Racine, B; Ruhl, John; Ruud, T M; Shariff, J A; Soler, J D; Song, Xue; Ullom, Joel N; Van Lanen, Jeff; Vissers, Michael R; Wehus, I K; Wen, Shyang; Wiebe, D V; Young, Edward

    2016-01-01

    We describe 280 GHz bolometric detector arrays that instrument the balloon-borne polarimeter SPIDER. A primary science goal of SPIDER is to measure the large-scale B-mode polarization of the cosmic microwave background in search of the cosmic-inflation, gravitational-wave signature. 280 GHz channels aid this science goal by constraining the level of B-mode contamination from galactic dust emission. We present the focal plane unit design, which consists of a 16$\\times$16 array of conical, corrugated feedhorns coupled to a monolithic detector array fabricated on a 150 mm diameter silicon wafer. Detector arrays are capable of polarimetric sensing via waveguide probe-coupling to a multiplexed array of transition-edge-sensor (TES) bolometers. The SPIDER receiver has three focal plane units at 280 GHz, which in total contains 765 spatial pixels and 1,530 polarization sensitive bolometers. By fabrication and measurement of single feedhorns, we demonstrate 14.7$^{\\circ}$ FHWM Gaussian-shaped beams with $<$1% ellip...

  1. Distinct molecular signatures in pediatric infratentorial glioblastomas defined by aCGH.

    Science.gov (United States)

    Sharma, S; Free, A; Mei, Y; Peiper, S C; Wang, Z; Cowell, J K

    2010-10-01

    Glioblastomas (GBM) are rare in children, but reportedly have more varied outcome which suggests differences in tumor etiology compared to typical GBM of adults. To investigate this we performed high resolution array comparative genomic hybridization (aCGH) analysis on three pediatric infratentorial GBM, ages 3.5, 7 and 14 years. Two of these tumors occurred in the brainstem and one in the spinal cord. While histologically typical, one brainstem tumor showed mainly pleomorphic astrocytic cells, whereas the other brainstem and spinal tumors showed a GFAP positive small cell component. Whole chromosomal gains (#1 and #2) and loss (#20) were seen only in the pleomorphic brainstem GBM, which also showed a high level of segmental genomic copy number changes. Segmental loss involving chromosome 8 was seen in all three tumors (Chr8;133039446-136869494, Chr8;pter-3581577, and Chr8;pter-30480019 respectively), whereas loss involving chromosome 16 was seen in only 2 cases with small cell components (Chr16;31827239-qter and Chr16;pter-29754532). Segmental gain of chromosome 7 was shared only between the 2 brainstem cases (Chr7;17187166-qter and Chr7;69824947-qter). Chromosome 17 showed segmental gain of 17q in the backdrop of loss of 17p only in case 1. Segmental gain of chromosome 1q was seen only in case 2. The spinal GBM showed a relatively stable karyotype with a unique loss of Chr19;32848902-qter. None of the frequent losses, gains and amplifications known to occur in adult GBM were identified, suggesting that pediatric infratentorial glioblastomas show a molecular karyotype that was more characteristic of pediatric embryonal tumors than adult GBM.

  2. Logic design for array-based circuits a structured design methodology

    CERN Document Server

    White, D E

    1992-01-01

    This book will show you how to approach the design covering everything from the circuit specification to the final design acceptance, including what support you can expect, sizing, timing analysis, power and packaging, various simulations, design verification, and design submission.

  3. CONSTRICTED PARTICLE SWARM OPTIMIZATION FOR DESIGN OF COLLINEAR ARRAY OF UNEQUAL LENGTH DIPOLE ANTENNAS

    Directory of Open Access Journals (Sweden)

    Banani Basu

    2010-06-01

    Full Text Available A method based on constricted Particle Swarm Optimization (CPSO algorithm to design a non-uniformly spaced collinear array of thin dipole antennas of unequal height is proposed. This paper presents a method for computing the appropriate excitation and geometry of individual array elements to generate a pencil beam in the vertical plane with minimum Standing Wave Ratio (SWR and fixed Side Lobe Level (SLL. Coupling effect between any two collinear center-fed thin dipole antennas having sinusoidal current distributions is analyzed using induced EMF method and minimized in terms of SWR. DRR of excitation distribution is fixed at a lower value for further mitigation of the coupling effect. Phase distribution for all the elements is kept at zero degree for broadside array. Optimization results show the effectiveness of the algorithm for the design of the array. Moreover method seems very conducive for estimating the mutual impedance between any two collinear center-fed thin dipole antennas having sinusoidal current distributions.

  4. Design of a photovoltaic central power station: flat-plate array

    Energy Technology Data Exchange (ETDEWEB)

    1984-02-01

    A design for a photovoltaic central power station using fixed flat-panel arrays has been developed. The 100 MW plant is assumed to be located adjacent to the Saguaro Power Station of Arizona Public Service. The design assumes high-efficiency photovoltaic modules using dendritic web cells. The modules are arranged in 5 MW subfields, each with its own power conditioning unit. The photovoltaic output is connected to the existing 115 kV utility switchyard. The site specific design allows detailed cost estimates for engineering, site preparation, and installation. Collector and power conditioning costs have been treated parametrically.

  5. Design and development of high frequency matrix phased-array ultrasonic probes

    Science.gov (United States)

    Na, Jeong K.; Spencer, Roger L.

    2012-05-01

    High frequency matrix phased-array (MPA) probes have been designed and developed for more accurate and repeatable assessment of weld conditions of thin sheet metals commonly used in the auto industry. Unlike the line focused ultrasonic beam generated by a linear phased-array (LPA) probe, a MPA probe can form a circular shaped focused beam in addition to the typical beam steering capabilities of phased-array probes. A CIVA based modeling and simulation method has been used to design the probes in terms of various probe parameters such as number of elements, element size, overall dimensions, frequency etc. Challenges associated with the thicknesses of thin sheet metals have been resolved by optimizing these probe design parameters. A further improvement made on the design of the MPA probe proved that a three-dimensionally shaped matrix element can provide a better performing probe at a much lower probe manufacturing cost by reducing the total number of elements and lowering the operational frequency. This three dimensional probe naturally matches to the indentation shape of the weld on the thin sheet metals and hence a wider inspection area with the same level of spatial resolution obtained by a twodimensional flat MPA probe operating at a higher frequency. The two aspects, a wider inspection area and a lower probe manufacturing cost, make this three-dimensional MPA sensor more attractive to auto manufacturers demanding a quantitative nondestructive inspection method.

  6. Design and Test Analysis of a Solar Array Root Hinge Drive Assembly

    Institute of Scientific and Technical Information of China (English)

    DING Xilun; LI Xin

    2014-01-01

    A root hinge drive assembly is preferred in place of the classical viscous damper in a large solar array system. It has advantages including better deployment control and higher reliability. But the traditional single degree of freedom model should be improved. A multiple degrees of freedom dynamics model is presented for the solar arrays deployment to guide the drive assembly design. The established model includes the functions of the torsion springs, the synchronization mechanism and the lock-up impact. A numerical computation method is proposed to solve the dynamics coupling problem. Then considering the drive torque requirement calculated by the proposed model, a root hinge drive assembly is developed based on the reliability engineering design methods, and dual actuators are used as a redundancy design. Pseudo-efficiency is introduced and the major factors influencing the (pseudo-) efficiency of the gear mechanism designed with high reduction ratio are studied for further test data analysis. A ground prototype deployment test is conducted to verify the capacity of the drive assembly. The test device consists of a large-area solar array system and a root hinge drive assembly. The RHDA development time is about 43 s. The theoretical drive torque is compared with the test values which are obtained according to the current data and the reduction efficiency analysis, and the results show that the presented model and the calibration methods are proper enough.

  7. Design and test analysis of a solar array root hinge drive assembly

    Science.gov (United States)

    Ding, Xilun; Li, Xin

    2014-09-01

    A root hinge drive assembly is preferred in place of the classical viscous damper in a large solar array system. It has advantages including better deployment control and higher reliability. But the traditional single degree of freedom model should be improved. A multiple degrees of freedom dynamics model is presented for the solar arrays deployment to guide the drive assembly design. The established model includes the functions of the torsion springs, the synchronization mechanism and the lock-up impact. A numerical computation method is proposed to solve the dynamics coupling problem. Then considering the drive torque requirement calculated by the proposed model, a root hinge drive assembly is developed based on the reliability engineering design methods, and dual actuators are used as a redundancy design. Pseudo-efficiency is introduced and the major factors influencing the (pseudo-) efficiency of the gear mechanism designed with high reduction ratio are studied for further test data analysis. A ground prototype deployment test is conducted to verify the capacity of the drive assembly. The test device consists of a large-area solar array system and a root hinge drive assembly. The RHDA development time is about 43 s. The theoretical drive torque is compared with the test values which are obtained according to the current data and the reduction efficiency analysis, and the results show that the presented model and the calibration methods are proper enough.

  8. 1-D Systolic Arrays Design of LMS Adaptive (FIR Digital Filtering

    Directory of Open Access Journals (Sweden)

    Ali H. Mahdi

    2010-01-01

    Full Text Available This paper extends the 1-D systolic array approach with a method of systematic linear design of systolic algorithms. Past methods for mapping the Least-Mean-Square (LMS Adaptive Finite-Impulse-Response (FIR filter onto parallel and pipelined architectures either introduce delays in the coefficients updates or have excessive hardware requirements. In this article, we describe an efficient 1-D systolic array for the LMS adaptive FIR filter that produces the same output and error signals as produced by the standard LMS adaptive filter architecture with single assignment form of processor functions.The proposed systolic architectures that are designed operate on a block-by-block basis and makes use of the flexibility in the design, which takes the inner product step (convolution sum of the tap weight vector and the tap input vector in the design consideration. It enables us to extract more than one algorithm for the same problem. The input and output data flow sequentially and continuously into and out of the systolic arrays at the system clock rates, during each clock period, processing element of the same type operates in parallel. The most computationally demanding among them performs only two consecutive multiplications and two additions/subtractions per clock period, thereby allowing a very high throughput and very fast block signal processing to be achieved at the expense of a delay of L samples between the input and output and 100% utilization, L being the block size.

  9. A Design and Analysis of Dolph-Chebyshev Microstrip Planar Array Using Butler Matrix Beamforming Networks

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    The design and analysis of special type beamformer, the Butler matrix, to achieve orthogonal beamforming networks is presented in this paper. A 4×4 microstrip planar array antenna is assumed to simulate a 4×4 Butler matrix to demonstrate orthogonal beamforming and beam steering. The dimensions of rectangular patches in the planar array are chosen according to the Dolph-Chebyshev current distribution in order to minimize the side-lobe level ratio for a given value of beamwidth. The simulations are carried out using an antenna design and analysis software PCAAD. It is shown that orthogonal beams can be formed to cover about 163° angle with a constant beam crossover level and high directivity.

  10. The Design and Characterization of a Flexible Tactile Sensing Array for Robot Skin.

    Science.gov (United States)

    Ji, Zhangping; Zhu, Hui; Liu, Huicong; Liu, Nan; Chen, Tao; Yang, Zhan; Sun, Lining

    2016-11-25

    In this study, a flexible tactile sensing array based on a capacitive mechanism was designed, fabricated, and characterized for sensitive robot skin. A device with 8 × 8 sensing units was composed of top and bottom flexible polyethyleneterephthalate (PET) substrates with copper (Cu) electrodes, a polydimethylsiloxane (PDMS) dielectric layer, and a bump contact layer. Four types of microstructures (i.e., pyramids and V-shape grooves) atop a PDMS dielectric layer were well-designed and fabricated to enhance tactile sensitivity. The optimal sensing unit achieved a high sensitivity of 35.9%/N in a force range of 0-1 N. By incorporating a tactile feedback control system, the flexible sensing array as the sensitive skin of a robotic manipulator demonstrated a potential capability of robotic obstacle avoidance.

  11. The Design and Characterization of a Flexible Tactile Sensing Array for Robot Skin

    Science.gov (United States)

    Ji, Zhangping; Zhu, Hui; Liu, Huicong; Liu, Nan; Chen, Tao; Yang, Zhan; Sun, Lining

    2016-01-01

    In this study, a flexible tactile sensing array based on a capacitive mechanism was designed, fabricated, and characterized for sensitive robot skin. A device with 8 × 8 sensing units was composed of top and bottom flexible polyethyleneterephthalate (PET) substrates with copper (Cu) electrodes, a polydimethylsiloxane (PDMS) dielectric layer, and a bump contact layer. Four types of microstructures (i.e., pyramids and V-shape grooves) atop a PDMS dielectric layer were well-designed and fabricated to enhance tactile sensitivity. The optimal sensing unit achieved a high sensitivity of 35.9%/N in a force range of 0–1 N. By incorporating a tactile feedback control system, the flexible sensing array as the sensitive skin of a robotic manipulator demonstrated a potential capability of robotic obstacle avoidance. PMID:27897993

  12. The Design and Characterization of a Flexible Tactile Sensing Array for Robot Skin

    Directory of Open Access Journals (Sweden)

    Zhangping Ji

    2016-11-01

    Full Text Available In this study, a flexible tactile sensing array based on a capacitive mechanism was designed, fabricated, and characterized for sensitive robot skin. A device with 8 × 8 sensing units was composed of top and bottom flexible polyethyleneterephthalate (PET substrates with copper (Cu electrodes, a polydimethylsiloxane (PDMS dielectric layer, and a bump contact layer. Four types of microstructures (i.e., pyramids and V-shape grooves atop a PDMS dielectric layer were well-designed and fabricated to enhance tactile sensitivity. The optimal sensing unit achieved a high sensitivity of 35.9%/N in a force range of 0–1 N. By incorporating a tactile feedback control system, the flexible sensing array as the sensitive skin of a robotic manipulator demonstrated a potential capability of robotic obstacle avoidance.

  13. DESIGN OF HYBRID COUPLER CONNECTED SQUARE ARRAY PATCH ANTENNA FOR Wi-Fi APPLICATIONS

    Directory of Open Access Journals (Sweden)

    A. Sahaya Anselin Nisha

    2012-01-01

    Full Text Available Microstrip patch antennas being popular because of light weight, low volume, thin profile configuration which can be made conformal. Wireless communication systems applications circular polarization antenna is placing vital role. In this study we introduce a new technique to produce circular polarization. Hybrid coupler is directly connected to microstrip antenna to get circular polarization. Also gain is further increased by introducing antenna array technique. Each square in array having length of 4.6mm patch is having thickness of 0.381mm and the dielectric material used FR4. The designed antenna having high gain of 6.26dB and directivity of 5.11dB at the resonant frequency of 3.7GHz. Simulation results shows that the designed antenna characteristic is suitable for Wi-Fi applications.

  14. Design of Large Thinned Arrays Using Different Biogeography-Based Optimization Migration Models

    Directory of Open Access Journals (Sweden)

    Sotirios K. Goudos

    2016-01-01

    Full Text Available Array thinning is a common discrete-valued combinatorial optimization problem. Evolutionary algorithms are suitable techniques for above-mentioned problem. Biogeography-Based Optimization (BBO, which is inspired by the science of biogeography, is a stochastic population-based evolutionary algorithm (EA. The original BBO uses a linear migration model to describe how species migrate from one island to another. Other nonlinear migration models have been proposed in the literature. In this paper, we apply BBO with four different migration models to five different large array design cases. Additionally we compare results with five other popular algorithms. The problems dimensions range from 150 to 300. The results show that BBO with sinusoidal migration model generally performs better than the other algorithms. However, these results are considered to be indicative and do not generally apply to all optimization problems in antenna design.

  15. Design, modeling and testing of the Askaryan Radio Array South Pole autonomous renewable power stations

    Energy Technology Data Exchange (ETDEWEB)

    Besson, D.Z., E-mail: zedlam@ku.edu [Department of Physics and Astronomy, University of Kansas, 1082 Malott Hall, 1251 Wescoe Hall Drive, Lawrence, KS 66045-7582 (United States); Moscow Engineering and Physics Institute, 31 Kashirskaya Highway, Moscow 115409 (Russian Federation); Kennedy, D.M., E-mail: dmkennedy@ku.edu [Department of Physics and Astronomy, University of Kansas, 1082 Malott Hall, 1251 Wescoe Hall Drive, Lawrence, KS 66045-7582 (United States); Ratzlaff, K., E-mail: ratzlaff@ku.edu [Instrumentation Design Laboratory, University of Kansas, 6042 Malott Hall, 1251 Wescoe Hall Drive, Lawrence, KS 66045-7582 (United States); Young, R., E-mail: rwyoung@ku.edu [Instrumentation Design Laboratory, University of Kansas, 6042 Malott Hall, 1251 Wescoe Hall Drive, Lawrence, KS 66045-7582 (United States)

    2014-11-01

    We describe the design, construction and operation of the Askaryan Radio Array (ARA) Autonomous Renewable Power Stations, initially installed at the South Pole in December, 2010 with the goal of providing an independently operating 100 W power source capable of year-round operation in extreme environments. In addition to particle astrophysics applications at the South Pole, such a station can easily be, and has since been, extended to operation elsewhere, as described herein.

  16. Analysis and design of coupled-oscillator arrays for microwave systems

    Science.gov (United States)

    Moussounda, Renaud

    The concept of synchronized nonlinear coupled oscillators is applied to microwave and antenna engineering for the analysis and design of wireless communication and sensing systems operating at the microwave and/or millimeter (mm)-wave frequencies. The significance of such approach is justified from the potential gain in efficiency, weight, cost and functionality although technical challenges stand in the way. Unlike typical phased array systems, which are currently used to construct such systems, coupled-oscillator systems present additional challenges that mainly arise from maintaining stability and synchronization as the the coupled nonlinear system is operated. Linear systems do not present such stability issues and are consequently faster since they do not rely on any gradual synchronization mechanism in order to function. However, at significantly higher frequencies in the quasi-optical domain, coupled-oscillator systems can make up for the speed difference and present significant efficiency advantages over typical phased array architectures. In addition, coupled nonlinear systems possess inherent analog properties that can be used for a multitude of functions. This dissertation advances the topic of coupled-oscillator arrays by 1) developing an alternative set of techniques for designing the oscillating unit cells called active integrated antennas (AIAs) at microwave or mm-wave frequencies, 2) developing a more accurate description of the dynamics of the array, 3) developing and implementing a new topology for a coupling network that is able to extend stability, 4) implementing a fully non-reciprocally coupled array able to produce large scan angle without loss of stability, 5) proposing an architecture based on a single phase-locked loop (PLL) and containing a self-calibration mechanism, and finally 6) implementing a phase-boosting mechanism using simple circuits to amplify the phase difference between adjacent radiating antennas in order to increase

  17. Design and fabrication of microlens and spatial filter array by self-alignment

    Science.gov (United States)

    Yang, Ren; Chan, Kin Foong; Feng, Zhiqiang; Mei, Wenhui

    2003-01-01

    For typically small volume production of MEMS, MOEMS, fine feature PCB, high density chip packaging and display panels, especially for lab tests, low cost and the capability to change the original design easily and quickly are very important for customers and researchers. BALL Semiconductor Inc.'s Maskless Lithography Systems (MLS) feature the Digital Mirror Device (DMD) as the pattern generator to replace photo-masks. This can remove masks from UV lithography, and dramatically reduce the running cost and save time for lab tests and small volume production. At Ball Semiconductor Inc, 1.5μm line/space, 10μm line/space, and 20μm line/space Maskless Lithography Systems were developed. In our MLS, an 848×600 microlens and spatial filter array (MLSFA) was used to focus the light and to filter the noise. In order to produce smaller line-space than 16μm the MLSFA was used to get smaller UV light pad (compared with the SVGA DMD"s micro-mirror: 17μm×17μm) and to filter the noise produced from the DMD, optical lens system, and micro lens array. This MLSFA is one of the key devices for our Maskless Lithography System, and determines the resolution and quality of maskless lithography. A novel design and fabrication process of a single-package MLSFA for our Maskless Lithography System will be introduced. To avoid problems produced by misalignment between a two-piece spatial filter and microlens array, MEMS processing is used to integrate the microlens array with the spatial filter array. In this paper, the self-alignment method used to fabricate exactly matched MLSFA will be presented.

  18. MR thermometry characterization of a hyperthermia ultrasound array designed using the k-space computational method

    Directory of Open Access Journals (Sweden)

    Lee Hotaik

    2006-10-01

    Full Text Available Abstract Background Ultrasound induced hyperthermia is a useful adjuvant to radiation therapy in the treatment of prostate cancer. A uniform thermal dose (43°C for 30 minutes is required within the targeted cancerous volume for effective therapy. This requires specific ultrasound phased array design and appropriate thermometry method. Inhomogeneous, acoustical, three-dimensional (3D prostate models and economical computational methods provide necessary tools to predict the appropriate shape of hyperthermia phased arrays for better focusing. This research utilizes the k-space computational method and a 3D human prostate model to design an intracavitary ultrasound probe for hyperthermia treatment of prostate cancer. Evaluation of the probe includes ex vivo and in vivo controlled hyperthermia experiments using the noninvasive magnetic resonance imaging (MRI thermometry. Methods A 3D acoustical prostate model was created using photographic data from the Visible Human Project®. The k-space computational method was used on this coarse grid and inhomogeneous tissue model to simulate the steady state pressure wavefield of the designed phased array using the linear acoustic wave equation. To ensure the uniformity and spread of the pressure in the length of the array, and the focusing capability in the width of the array, the equally-sized elements of the 4 × 20 elements phased array were 1 × 14 mm. A probe was constructed according to the design in simulation using lead zerconate titanate (PZT-8 ceramic and a Delrin® plastic housing. Noninvasive MRI thermometry and a switching feedback controller were used to accomplish ex vivo and in vivo hyperthermia evaluations of the probe. Results Both exposimetry and k-space simulation results demonstrated acceptable agreement within 9%. With a desired temperature plateau of 43.0°C, ex vivo and in vivo controlled hyperthermia experiments showed that the MRI temperature at the steady state was 42.9 ± 0.38

  19. Design of Circle Array Pattern for Transparent Nanomesh-Type Electrodes.

    Science.gov (United States)

    Shin, Seungsu; Ganorkar, Shraddha; Kim, Jungyoon; Kim, Young-Hwan; Kim, Yong Tae; Kim, Seong-Il

    2015-10-01

    In this study, we report simulation results for the optical properties of nanomesh-type electrodes for transparent electrode. Usually, indium tin oxide (ITO) is commonly used for transparent conductor to solar cell, display, LED and other electronic modules. However, the cost is high due to the rarity of indium. An alternative way is use of transparent nanomesh-type metal electrode for solar cell. Finite different time domain (FDTD) method was used to simulate and analyze their optical properties. Various array patterns (square, circle and circle hexagonal array) of metal on glass (SiO2) substrates were designed and their properties of transmission and reflection were simulated by using the broad band (λ = 300~1200 nm) plane wave source. To compare basic characteristics of each pattern, various structural parameters such as hole diameter, pitch and metal thickness were applied. The effect of three typical metals, such as Ag, Au, and Al was also compared. In the results, we will discuss about large dip of transmission appeared at the particular wavelength region from the circle array pattern, which is design with pitch of 500 nm at the wavelength range 700 to 800 nm. The surface plasmonpolaritons (SPP) effect can be the cause of large dip and we could find a broad and high transmission from the properly designed in nanomesh-type electrodes, which was calculated as a function of wavelength.

  20. Association of cGH EcoRV Gene with Production in Tolaki Chicken

    Directory of Open Access Journals (Sweden)

    Muhammad Amrullah Pagala

    2017-02-01

    Full Text Available cGH (Chicken Growth Hormone gene plays a crucial role in production responses of chicken. The objective of the research was to investigate the association of cGH gene with production in Tolaki chicken. Tolaki chicken is native chickens from Southeast Sulawesi Province of Indonesian. cGH gene was genotyped in 58 Tolaki chicken with PCR-RFLP. PCR was used to amplify genomic DNA for GH gene (399 bp. The amplicon was cutted by EcoRV and produced three genotypes: AA, AG, and GG and two alleles: A and G allele. The study showed the association of GH gene polymorphism with Production traits. GG genotype have better production (daily weight gain and feed conversion than AG genotype in Tolaki chicken, providing evidence that GH gene might be an important candidate gene for production traits.

  1. Design of an optically controlled Ka-band GaAs MMIC phased-array antenna

    Science.gov (United States)

    Kunath, Richard R.; Bhasin, Kul B.; Claspy, Paul C.; Richard, Mark A.

    1990-06-01

    Phased array antennas long were investigated to support the agile, multibeam radiating apertures with rapid reconfigurability needs of radar and communications. With the development of the Monolithic Microwave Integrated Circuit (MMIC), phased array antennas having the stated characteristics are becoming realizable. However, at K-band frequencies (20 to 40 GHz) and higher, the problem of controlling the MMICs using conventional techniques either severely limits the array size or becomes insurmountable due to the close spacing of the radiating elements necessary to achieve the desired antenna performance. Investigations were made that indicate using fiber optics as a transmission line for control information for the MMICs provides a potential solution. By adding an optical interface circuit to pre-existing MMIC designs, it is possible to take advantage of the small size, lightweight, mechanical flexibility and RFI/EMI resistant characteristics of fiber optics to distribute MMIC control signals. The architecture, circuit development, testing and integration of optically controlled K-band MMIC phased array antennas are described.

  2. Design of an optically controlled Ka-band GaAs MMIC phased-array antenna

    Science.gov (United States)

    Kunath, Richard R.; Bhasin, Kul B.; Claspy, Paul C.; Richard, Mark A.

    1990-01-01

    Phased array antennas long were investigated to support the agile, multibeam radiating apertures with rapid reconfigurability needs of radar and communications. With the development of the Monolithic Microwave Integrated Circuit (MMIC), phased array antennas having the stated characteristics are becoming realizable. However, at K-band frequencies (20 to 40 GHz) and higher, the problem of controlling the MMICs using conventional techniques either severely limits the array size or becomes insurmountable due to the close spacing of the radiating elements necessary to achieve the desired antenna performance. Investigations were made that indicate using fiber optics as a transmission line for control information for the MMICs provides a potential solution. By adding an optical interface circuit to pre-existing MMIC designs, it is possible to take advantage of the small size, lightweight, mechanical flexibility and RFI/EMI resistant characteristics of fiber optics to distribute MMIC control signals. The architecture, circuit development, testing and integration of optically controlled K-band MMIC phased array antennas are described.

  3. Concepts of the mosaic array of numerous ultra-small lens (MANUL) design

    Science.gov (United States)

    Pál, A.; Mészáros, L.

    2016-08-01

    In order to provide a continuous, multi-color time-domain surveying of the brightest regime of the naked-eye optical sky, we designed the Mosaic Array of Numerous Ultrasmall Lens (MANUL). This device is a palm-sized "astronomical observatory," featuring optics, filters and all necessary electronics (including a TCP/IP-based downlink), all are mounted on 2-inch printed circuit boards. Based on these units, a modular and mosaic arrangement of CMOS imaging sensors with an effective resolution of 1'/pixel can be built. Here we introduce the main design concepts, the early prototyping and the results of the preliminary photometric quality analysis of this initiative.

  4. Design of integrated scanning laser Doppler velocitmeter using arrayed waveguide gratings

    Science.gov (United States)

    Maru, Koichi; Fujii, Yusaku; Obokata, Tomio; Ishima, Tsuneaki; Yupapin, Preecha; Pornsuwancharoen, Nithitroth; Juthanggoon, Thanaprasert

    2009-07-01

    An integrated scanned differential LDV has been proposed using planar lightwave circuit (PLC) technology. By using the proposed LDV, the measurement position can be scanned in depth direction without any mechanical movement. The PLC technology is utilized in the proposed design for achieving a compact optical circuit. The characteristics of the proposed LDV are simulated with a design model based on grating equations for AWGs. The simulation result reveals that the measurement position can be changed over the range of 46 mm in the depth direction without mechanical movement when the displacement between output sides of two waveguide arrays is 30 mm.

  5. Innovative enclosure dome/observing aperture system design for the MROI Array Telescopes

    Science.gov (United States)

    Busatta, A.; Marchiori, G.; Mian, S.; Payne, I.; Pozzobon, M.

    2010-07-01

    The close-pack array of the MROI necessitated an original design for the Unit Telescope Enclosure (UTE) at Magdalena Ridge Observatory. The Magdalena Ridge Observatory Interferometer (MROI) is a project which comprises an array of up to ten (10) 1.4m diameter mirror telescopes arranged in a "Y" configuration. Each of these telescopes will be housed inside a Unit Telescope Enclosure (UTE) which are relocatable onto any of 28 stations. The most compact configuration includes all ten telescopes, several of which are at a relative distance of less than 8m center to center from each other. Since the minimum angle of the field of regard is 30° with respect to the horizon, it is difficult to prevent optical blockage caused by adjacent UTEs in this compact array. This paper presents the design constraints inherent in meeting the requirement for the close-pack array. An innovative design enclosure was created which incorporates an unique dome/observing aperture system. The description of this system focuses on how the field of regard requirement led to an unique and highly innovative concept that had to be able to operate in the harsh environmental conditions encountered at an altitude of 10,460ft (3,188m). Finally, we describe the wide use of composites materials and structures (e.g. glass/carbon fibres, sandwich panels etc.) on the aperture system which represents the only way to guarantee adequate thermal and environmental protection, compactness, structural stability and limited power consumption due to reduced mass.

  6. Design, microfabrication, and analysis of micrometer-sized cylindrical ion trap arrays

    Science.gov (United States)

    Cruz, D.; Chang, J. P.; Fico, M.; Guymon, A. J.; Austin, D. E.; Blain, M. G.

    2007-01-01

    A description of the design and microfabrication of arrays of micrometer-scale cylindrical ion traps is offered. Electrical characterization and initial ion trapping experiments with a massively parallel array of 5μm internal radius (r0) sized cylindrical ion traps (CITs) are also described. The ion trap, materials, and design are presented and shown to be critical in achieving minimal trapping potential while maintaining minimal power consumption. The ion traps, fabricated with metal electrodes, have inner radii of 1, 2, 5, and 10μm and range from 5to24μm in height. The electrical characteristics of packaged ion trap arrays were measured with a vector network analyzer. The testing focused on trapping toluene (C7H8), mass 91, 92, or 93amu, in the 5μm sized CITs. Ions were formed via electron impact ionization and were ejected by turning off the rf voltage applied to the ring electrode; a current signal was collected at this time. Optimum ionization and trapping conditions, such as a sufficient pseudopotential well and high ionization to ion loss rate ratio (as determined by simulation), proved to be difficult to establish due to the high device capacitance and the presence of exposed dielectric material in the trapping region. However, evidence was obtained suggesting the trapping of ions in 1%-15% of the traps in the array. These first tests on micrometer-scale CITs indicated the necessary materials and device design modifications for realizing ultrasmall and low power ion traps.

  7. Design and array signal suggestion of array type pulsed eddy current probe for health monitoring of metal tubes

    Energy Technology Data Exchange (ETDEWEB)

    Shin, Young Kil [Dept. of Electrical Engineering, Kunsan National University, Kunsan (Korea, Republic of)

    2015-10-15

    An array type probe for monitoring metal tubes is proposed in this paper which utilizes peak value and peak time of a pulsed eddy current(PEC) signal. The probe consists of an array of encircling coils along a tube and the outside of coils is shielded by ferrite to prevent source magnetic fields from directly affecting sensor signals since it is the magnetic fields produced by eddy currents that reflect the condition of metal tubes. The positions of both exciter and sensor coils are consecutively moved automatically so that manual scanning is not necessary. At one position of send-receive coils, peak value and peak time are extracted from a sensor PEC signal and these data are accumulated for all positions to form an array type peak value signal and an array type peak time signal. Numerical simulation was performed using the backward difference method in time and the finite element method for spatial analysis. Simulation results showed that peak value increases and the peak appears earlier as the defect depth or length increases. The proposed array signals are shown to be excellent in reflecting the defect location as well as variations of defect depth and length within the array probe.

  8. Direct Closed-Form Design of Finite Alphabet Constant Envelope Waveforms for Planar Array Beampatterns

    KAUST Repository

    Bouchoucha, Taha

    2015-05-01

    Multiple Input Multiple Output (MIMO) radar systems has attracted lately a lot of attention thanks to its advantage over the classical phased array radar systems. We site among these advantages the improvement of parametric identifiability, achievement of higher spatial resolution and design of complex beampatterns. In colocated multiple-input multiple-output radar systems, it is usually desirable to steer transmitted power in the region-of-interest in order to increase the Signal to Noise Ratio (SNR) and reduce any undesired signal and thus improve the detection process. This problem is also known as transmit beampattern design. To achieve this goal, conventional methods optimize the waveform covariance matrix, R, for the desired beampattern, which is then used to generate the actual transmitted waveforms. Both steps require constrained optimization. Most of the existing methods use iterative algorithms to solve these problems, therefore their computational complexity is very high which makes them hard to use in practice especially for real time radar applications. In this paper, we provide a closed-form solution to design the covariance matrix for a given beampattern in the three dimensional space using planar arrays, which is then used to derive a novel closed-form algorithm to directly design the finite-alphabet constant-envelope waveforms. The proposed algorithm exploits the two-dimensional discrete Fourier transform which is implemented using fast Fourier transform algorithm. Consequently, the computational complexity of the proposed beampattern solution is very low allowing it to be used for large arrays to change the beampattern in real time. We also show that the number of required snapshots in each waveform depends on the beampattern and that it is less than the total number of transmit antennas. In addition, we show that the proposed waveform design method can be used with non symmetric beampatterns. The performance of our proposed algorithm compares

  9. Design and fabrication of a bidimentional microbolometer array for Terahertz detection characterized at different temperatures

    Energy Technology Data Exchange (ETDEWEB)

    Orduna-Diaz, A [CIBA-Tlaxcala, IPN, Tlaxcala, Tlax.(Mexico); Castillo-DomInguez, E; Torres-Jacome, A; De la Hidalga-Wade, F J; Trevino-Palacios, C G, E-mail: abdu@inaoep.mx [Instituto Nacional de Astrofisica, Optica y Electronica, Apdo. Postal 51 y 216, Puebla, Pue. 72000 (Mexico)

    2011-01-01

    We present the design, micromachining and characterization of a bidimentional bolometer array for radiation detection in the 0.7-1.5 THz frequency range. The detector is based on a boron doped amorphous silicon film (a-Si-B:H). The film optimized for sensitivity enhancement was obtained using 500 sccm diborane flow with 95 nm thickness. The sensing layer was deposited using plasma enhanced chemical vapor deposition (PECVD) technique at low frequency on a 0.45 {mu}m thick silicon nitride membrane sustained by a micromachined frame in crystalline silicon. The design consists of four 5x5 bolometer arrays made by conventional lithography. The bolometer active area is 660 {mu}m x 420 {mu}m and the detector will operate as a focal plane array. The current-voltage characteristics present an ohmic behaviour; the temperature coefficient of resistance (TCR) was obtained by measuring the bolometer performance from room temperature down to liquid nitrogen temperature. The responsivity was measured under illumination from a black body radiating at 300, 500, 700, 900 and 1100 deg. C, obtaining a value of R =1.17 x 10{sup -2} A/W with a dark current of 4.43 x 10{sup -9} A

  10. Miniature objective lens for array digital pathology: design improvement based on clinical evaluation

    Science.gov (United States)

    McCall, Brian; Pierce, Mark; Graviss, Edward A.; Richards-Kortum, Rebecca R.; Tkaczyk, Tomasz S.

    2016-03-01

    A miniature objective designed for digital detection of Mycobacterium tuberculosis (MTB) was evaluated for diagnostic accuracy. The objective was designed for array microscopy, but fabricated and evaluated at this stage of development as a single objective. The counts and diagnoses of patient samples were directly compared for digital detection and standard microscopy. The results were found to be correlated and highly concordant. The evaluation of this lens by direct comparison to standard fluorescence sputum smear microscopy presented unique challenges and led to some new insights in the role played by the system parameters of the microscope. The design parameters and how they were developed are reviewed in light of these results. New system parameters are proposed with the goal of easing the challenges of evaluating the miniature objective and maintaining the optical performance that produced the agreeable results presented without over-optimizing. A new design is presented that meets and exceeds these criteria.

  11. DSTN (Distributed Sleep Transistor Network) for Low Power Programmable Logic array Design

    CERN Document Server

    Singla, Pradeep; Malik, Naveen Kr; 10.5120/7004-9563

    2012-01-01

    With the high demand of the portable electronic products, Low- power design of VLSI circuits & Power dissipation has been recognized as a challenging technology in the recent years. PLA (Programming logic array) is one of the important off shelf part in the industrial application. This paper describes the new design of PLA using power gating structure sleep transistor at circuit level implementation for the low power applications. The important part of the power gating design i.e. header and footer switch selection is also describes in the paper. The simulating results of the proposed architecture of the new PLA is shown and compared with the conventional PLA. This paper clearly shows the optimization in the reduction of power dissipation in the new design implementation of the PLA. The transient response of the power gates structure of PLA is also illustrate in the paper by using TINA-PRO software.

  12. Miniature Exoplanet Radial Velocity Array (MINERVA) I. Design, Commissioning, and First Science Results

    Science.gov (United States)

    Swift, Jonathan J.; Bottom, Michael; Johnson, John A.; Wright, Jason T.; McCrady, Nate; Wittenmyer, Robert A.; Plavchan, Peter; Riddle, Reed; Muirhead, Philip S.; Herzig, Erich; Myles, Justin; Blake, Cullen H.; Eastman, Jason; Beatty, Thomas G.; Barnes, Stuart I.; Gibson, Steven R.; Lin, Brian; Zhao, Ming; Gardner, Paul; Falco, Emilio; Criswell, Stephen; Nava, Chantanelle; Robinson, Connor; Sliski, David H.; Hedrick, Richard; Ivarsen, Kevin; Hjelstrom, Annie; de Vera, Jon; Szentgyorgyi, Andrew

    2015-04-01

    The Miniature Exoplanet Radial Velocity Array (MINERVA) is a U.S.-based observational facility dedicated to the discovery and characterization of exoplanets around a nearby sample of bright stars. MINERVA employs a robotic array of four 0.7-m telescopes outfitted for both high-resolution spectroscopy and photometry, and is designed for completely autonomous operation. The primary science program is a dedicated radial velocity survey and the secondary science objective is to obtain high-precision transit light curves. The modular design of the facility and the flexibility of our hardware allows for both science programs to be pursued simultaneously, while the robotic control software provides a robust and efficient means to carry out nightly observations. We describe the design of MINERVA, including major hardware components, software, and science goals. The telescopes and photometry cameras are characterized at our test facility on the Caltech campus in Pasadena, California, and their on-sky performance is validated. The design and simulated performance of the spectrograph is briefly discussed as we await its completion. New observations from our test facility demonstrate sub-mmag photometric precision of one of our radial velocity survey targets, and we present new transit observations and fits of WASP-52b-a known hot-Jupiter with an inflated radius and misaligned orbit. The process of relocating the MINERVA hardware to its final destination at the Fred Lawrence Whipple Observatory in southern Arizona has begun, and science operations are expected to commence in 2015.

  13. Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analyses

    Directory of Open Access Journals (Sweden)

    van Wieringen Wessel N

    2012-05-01

    Full Text Available Abstract Background An increasing number of genomic studies interrogating more than one molecular level is published. Bioinformatics follows biological practice, and recent years have seen a surge in methodology for the integrative analysis of genomic data. Often such analyses require knowledge of which elements of one platform link to those of another. Although important, many integrative analyses do not or insufficiently detail the matching of the platforms. Results We describe, illustrate and discuss six matching procedures. They are implemented in the R-package sigaR (available from Bioconductor. The principles underlying the presented matching procedures are generic, and can be combined to form new matching approaches or be applied to the matching of other platforms. Illustration of the matching procedures on a variety of data sets reveals how the procedures differ in the use of the available data, and may even lead to different results for individual genes. Conclusions Matching of data from multiple genomics platforms is an important preprocessing step for many integrative bioinformatic analysis, for which we present six generic procedures, both old and new. They have been implemented in the R-package sigaR, available from Bioconductor.

  14. 22q13.3 Deletion Syndrome : Clinical and Molecular Analysis Using Array CGH

    NARCIS (Netherlands)

    Dhar, S. U.; del Gaudio, D.; German, J. R.; Peters, S. U.; Ou, Z.; Bader, P. I.; Berg, J. S.; Blazo, M.; Brown, C. W.; Graham, B. H.; Grebe, T. A.; Lalani, S.; Irons, M.; Sparagana, S.; Williams, M.; Phillips, J. A.; Beaudet, A. L.; Stankiewicz, P.; Patel, A.; Cheung, S. W.; Sahoo, T.

    2010-01-01

    The 22q13.3 deletion syndrome results from loss of terminal segments of varying sizes at 22qter. Few genotype phenotype correlations have been found but all patients have mental retardation and severe delay, or absence of, expressive speech. We carried out clinical and molecular characterization of

  15. Design and implementation of a CMOS light pulse receiver cell array for spatial optical communications.

    Science.gov (United States)

    Sarker, Md Shakowat Zaman; Itoh, Shinya; Hamai, Moeta; Takai, Isamu; Andoh, Michinori; Yasutomi, Keita; Kawahito, Shoji

    2011-01-01

    A CMOS light pulse receiver (LPR) cell for spatial optical communications is designed and evaluated by device simulations and a prototype chip implementation. The LPR cell consists of a pinned photodiode and four transistors. It works under sub-threshold region of a MOS transistor and the source terminal voltage which responds to the logarithm of the photo current are read out with a source follower circuit. For finding the position of the light spot on the focal plane, an image pixel array is embedded on the same plane of the LPR cell array. A prototype chip with 640 × 240 image pixels and 640 × 240 LPR cells is implemented with 0.18 μm CMOS technology. A proposed model of the transient response of the LPR cell agrees with the result of the device simulations and measurements. Both imaging at 60 fps and optical communication at the carrier frequency of 1 MHz are successfully performed. The measured signal amplitude and the calculation results of photocurrents show that the spatial optical communication up to 100 m is feasible using a 10 × 10 LED array.

  16. Design of coated standing nanowire array solar cell performing beyond the planar efficiency limits

    Science.gov (United States)

    Zeng, Yang; Ye, Qinghao; Shen, Wenzhong

    2016-05-01

    The single standing nanowire (SNW) solar cells have been proven to perform beyond the planar efficiency limits in both open-circuit voltage and internal quantum efficiency due to the built-in concentration and the shifting of the absorption front. However, the expandability of these nano-scale units to a macro-scale photovoltaic device remains unsolved. The main difficulty lies in the simultaneous preservation of an effective built-in concentration in each unit cell and a broadband high absorption capability of their array. Here, we have provided a detailed theoretical guideline for realizing a macro-scale solar cell that performs furthest beyond the planar limits. The key lies in a complementary design between the light-trapping of the single SNWs and that of the photonic crystal slab formed by the array. By tuning the hybrid HE modes of the SNWs through the thickness of a coaxial dielectric coating, the optimized coated SNW array can sustain an absorption rate over 97.5% for a period as large as 425 nm, which, together with the inherited carrier extraction advantage, leads to a cell efficiency increment of 30% over the planar limit. This work has demonstrated the viability of a large-size solar cell that performs beyond the planar limits.

  17. Closed-form Solution to Directly Design FACE Waveforms for Beampatterns Using Planar Array

    KAUST Repository

    Bouchoucha, Taha

    2015-04-19

    In multiple-input multiple-output radar systems, it is usually desirable to steer transmitted power in the region-of-interest. To do this, conventional methods optimize the waveform covariance matrix, R, for the desired beampattern, which is then used to generate actual transmitted waveforms. Both steps require constrained optimization, therefore, use iterative algorithms. The main challenges encountered in the existing approaches are the computational complexity and the design of waveforms to use in practice. In this paper, we provide a closed-form solution to design covariance matrix for the given beampattern using the planar array, which is then used to derive a novel closed-form algorithm to directly design the finite-alphabet constant-envelope (FACE) waveforms. The proposed algorithm exploits the two-dimensional fast-Fourier-transform. The performance of our proposed algorithm is compared with existing methods that are based on semi-definite quadratic programming with the advantage of a considerably reduced complexity.

  18. Analysis of tiling array expression studies with flexible designs in Bioconductor (waveTiling

    Directory of Open Access Journals (Sweden)

    Beuf Kristof

    2012-09-01

    Full Text Available Abstract Background Existing statistical methods for tiling array transcriptome data either focus on transcript discovery in one biological or experimental condition or on the detection of differential expression between two conditions. Increasingly often, however, biologists are interested in time-course studies, studies with more than two conditions or even multiple-factor studies. As these studies are currently analyzed with the traditional microarray analysis techniques, they do not exploit the genome-wide nature of tiling array data to its full potential. Results We present an R Bioconductor package, waveTiling, which implements a wavelet-based model for analyzing transcriptome data and extends it towards more complex experimental designs. With waveTiling the user is able to discover (1 group-wise expressed regions, (2 differentially expressed regions between any two groups in single-factor studies and in (3 multifactorial designs. Moreover, for time-course experiments it is also possible to detect (4 linear time effects and (5 a circadian rhythm of transcripts. By considering the expression values of the individual tiling probes as a function of genomic position, effect regions can be detected regardless of existing annotation. Three case studies with different experimental set-ups illustrate the use and the flexibility of the model-based transcriptome analysis. Conclusions The waveTiling package provides the user with a convenient tool for the analysis of tiling array trancriptome data for a multitude of experimental set-ups. Regardless of the study design, the probe-wise analysis allows for the detection of transcriptional effects in both exonic, intronic and intergenic regions, without prior consultation of existing annotation.

  19. Design and characterization of novel all-solid-state potentiometric sensor array dedicated to physiological measurements.

    Science.gov (United States)

    Toczyłowska-Mamińska, Renata; Kloch, Monika; Zawistowska-Deniziak, Anna; Bala, Agnieszka

    2016-10-01

    A novel construction of all-solid-state potentiometric sensor array designed for physiological measurements has been presented. The planar construction and elimination of liquid phase creates broad opportunities for the modifications in the sensing part of the sensor. The designed construction is based on all-solid-state ion-selective electrodes integrated with the ionic-liquid based reference electrode. Work parameters of the sensor arrays were characterized. It has been shown that presented sensor design indicates high sensitivity (55.2±1mV/dec, 56.3±2mV/dec, 58.4±1mV/dec and 53.5±1mV/pH for sodium-, potassium-, chloride- and pH-selective electrodes, respectively in 10(-5)-10(-1.5)M range of primary ions), low response time (t95 did not exceed 10s), high potential stability (potential drift in 28-h measurement was ca. ±2mV) and potential repeatability ca. ±1mV. The system was successfully applied to the simultaneous determination of K(+), Cl(-), Na(+) and pH in the model physiological solution and for the ion flux studies in human colon epithelium Caco-2 cell line as well.

  20. VLSI design of an RSA encryption/decryption chip using systolic array based architecture

    Science.gov (United States)

    Sun, Chi-Chia; Lin, Bor-Shing; Jan, Gene Eu; Lin, Jheng-Yi

    2016-09-01

    This article presents the VLSI design of a configurable RSA public key cryptosystem supporting the 512-bit, 1024-bit and 2048-bit based on Montgomery algorithm achieving comparable clock cycles of current relevant works but with smaller die size. We use binary method for the modular exponentiation and adopt Montgomery algorithm for the modular multiplication to simplify computational complexity, which, together with the systolic array concept for electric circuit designs effectively, lower the die size. The main architecture of the chip consists of four functional blocks, namely input/output modules, registers module, arithmetic module and control module. We applied the concept of systolic array to design the RSA encryption/decryption chip by using VHDL hardware language and verified using the TSMC/CIC 0.35 m 1P4 M technology. The die area of the 2048-bit RSA chip without the DFT is 3.9 × 3.9 mm2 (4.58 × 4.58 mm2 with DFT). Its average baud rate can reach 10.84 kbps under a 100 MHz clock.

  1. Simulation of g factor for size optimization and coupling in phased array coil design

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    The effect of geometric parameters of the coil element in an array on signal-to-noise ratio (SNR) and g factor of parallel imaging are analyzed, and the optimal parameters for the maximal SNR and minimal g factor are also given in this paper. In addition, the effects of coupling on SNR and g factor have been analyzed. The test results indicate that g factor for parallel imaging is greatly increased and SNR is decreased for coupling. According to the optimization, a six-channel parallel coil has been designed for torso imaging.

  2. Design and Simulation of Routing-switching Protocol Based on Optical Switch Array

    Institute of Scientific and Technical Information of China (English)

    HE Wei; MAO You-ju; LIU Jiang

    2004-01-01

    An optical routing- switching technology based on optical switch array is proposed. The characteristics of the blocking and nonblocking networks are analyzed and compared, odd- even sorting network is used to realize optical routing- switching, relative routing- switching protocol is designed.Simulation test under load shows that it can reduce a blocking effectively and enhance an efficiency of switching. Further, it can transfer the processing and switching within parallel computer from electric domain to optical domain. It can make parallel computer coordinating computing and processing at much more higher speed, storing and transmitting even more efficiently.

  3. Design and fabrication of adjustable red-green-blue LED light arrays for plant research

    Directory of Open Access Journals (Sweden)

    Kenitz J Dustin

    2005-08-01

    Full Text Available Abstract Background Although specific light attributes, such as color and fluence rate, influence plant growth and development, researchers generally cannot control the fine spectral conditions of artificial plant-growth environments. Plant growth chambers are typically outfitted with fluorescent and/or incandescent fixtures that provide a general spectrum that is accommodating to the human eye and not necessarily supportive to plant development. Many studies over the last several decades, primarily in Arabidopsis thaliana, have clearly shown that variation in light quantity, quality and photoperiod can be manipulated to affect growth and control developmental transitions. Light emitting diodes (LEDs has been used for decades to test plant responses to narrow-bandwidth light. LEDs are particularly well suited for plant growth chambers, as they have an extraordinary life (about 100,000 hours, require little maintenance, and use negligible energy. These factors render LED-based light strategies particularly appropriate for space-biology as well as terrestrial applications. However, there is a need for a versatile and inexpensive LED array platform where individual wavebands can be specifically tuned to produce a series of light combinations consisting of various quantities and qualities of individual wavelengths. Two plans are presented in this report. Results In this technical report we describe the practical construction of tunable red-green-blue LED arrays to support research in plant growth and development. Two light fixture designs and corresponding circuitry are presented. The first is well suited for a laboratory environment for use in a finite area with small plants, such as Arabidopsis. The second is expandable and appropriate for growth chambers. The application of these arrays to early plant developmental studies has been validated with assays of hypocotyl growth inhibition/promotion and phototropic curvature in Arabidopsis seedlings

  4. Design and experiment of human hand motion driven electromagnetic energy harvester using dual Halbach magnet array

    Science.gov (United States)

    Salauddin, M.; Park, Jae Y.

    2017-03-01

    We present a dual Halbach array electromagnetic energy harvester that generates significant power from hand shaking vibration. The magnetic-spring configuration is employed for generating sufficient power from the hand motion of irregular and low-frequency vibrations. However, significant power generation at low-frequency vibrations is challenging because the power flow decreases as the frequency decreases; moreover, designing a spring-mass system that is suitable for low-frequency-vibration energy harvesting is difficult. In this work, our proposed device overcomes both of these challenges by using a dual Halbach array and magnetic springs. During the experiment, vibration was applied in a horizontal direction to reduce the gravity effect on the Halbach-array structure. To achieve an increased power generation at low-amplitude and low-frequency vibrations, the magnetic structure of the dual Halbach array and the magnetic springs were optimized in terms of the operating frequency and the power density. A prototype was fabricated and tested both using a vibration exciter and by manual hand-shaking. The fabricated device showed resonant behavior during the vibration exciter test. For the vibration exciter test, the prototype device offers a maximum average power of 2.92 mW to a 62 Ω optimum load, at a 6 Hz resonance frequency and under a 0.5 g acceleration. The prototype device is capable of delivering a maximum average power of 2.27 mW from hand shaking. The fabricated device exhibited a normalized power density 0.46 mW cm‑2g‑2 which is very high compared to the current state-of-the-art devices, representing its ability in powering portable and wearable smart devices from extremely low frequency vibration.

  5. Circuit design for the retina-like image sensor based on space-variant lens array

    Science.gov (United States)

    Gao, Hongxun; Hao, Qun; Jin, Xuefeng; Cao, Jie; Liu, Yue; Song, Yong; Fan, Fan

    2013-12-01

    Retina-like image sensor is based on the non-uniformity of the human eyes and the log-polar coordinate theory. It has advantages of high-quality data compression and redundant information elimination. However, retina-like image sensors based on the CMOS craft have drawbacks such as high cost, low sensitivity and signal outputting efficiency and updating inconvenience. Therefore, this paper proposes a retina-like image sensor based on space-variant lens array, focusing on the circuit design to provide circuit support to the whole system. The circuit includes the following parts: (1) A photo-detector array with a lens array to convert optical signals to electrical signals; (2) a strobe circuit for time-gating of the pixels and parallel paths for high-speed transmission of the data; (3) a high-precision digital potentiometer for the I-V conversion, ratio normalization and sensitivity adjustment, a programmable gain amplifier for automatic generation control(AGC), and a A/D converter for the A/D conversion in every path; (4) the digital data is displayed on LCD and stored temporarily in DDR2 SDRAM; (5) a USB port to transfer the data to PC; (6) the whole system is controlled by FPGA. This circuit has advantages as lower cost, larger pixels, updating convenience and higher signal outputting efficiency. Experiments have proved that the grayscale output of every pixel basically matches the target and a non-uniform image of the target is ideally achieved in real time. The circuit can provide adequate technical support to retina-like image sensors based on space-variant lens array.

  6. Design of oligonucleotides for microarrays and perspectives for design of multi-transcriptome arrays

    DEFF Research Database (Denmark)

    Nielsen, Henrik Bjørn; Wernersson, Rasmus; Knudsen, Steen

    2003-01-01

    with an overview of these parameters. We present here a flexible tool named OligoWiz for designing oligonucleotides for multiple purposes. OligoWiz presents a set of parameter scores in a graphical interface to facilitate an overview for the user. Additional custom parameter scores can easily be added......Optimal design of oligonucleotides for microarrays involves tedious and laborious work evaluating potential oligonucleotides relative to a series of parameters. The currently available tools for this purpose are limited in their flexibility and do not present the oligonucleotide designer...... to the program to extend the default parameters: homology, DeltaTm, low-complexity, position and GATC-only. Furthermore we present an analysis of the limitations in designing oligonucleotide sets that can detect transcripts from multiple organisms. OligoWiz is available at www.cbs.dtu.dk/services/OligoWiz/....

  7. Design and calibration of a six-axis MEMS sensor array for use in scoliosis correction surgery

    Science.gov (United States)

    Benfield, David; Yue, Shichao; Lou, Edmond; Moussa, Walied A.

    2014-08-01

    A six-axis sensor array has been developed to quantify the 3D force and moment loads applied in scoliosis correction surgery. Initially this device was developed to be applied during scoliosis correction surgery and augmented onto existing surgical instrumentation, however, use as a general load sensor is also feasible. The development has included the design, microfabrication, deployment and calibration of a sensor array. The sensor array consists of four membrane devices, each containing piezoresistive sensing elements, generating a total of 16 differential voltage outputs. The calibration procedure has made use of a custom built load application frame, which allows quantified forces and moments to be applied and compared to the outputs from the sensor array. Linear or non-linear calibration equations are generated to convert the voltage outputs from the sensor array back into 3D force and moment information for display or analysis.

  8. Infrared/microwave (IR/MW) micromirror array beam combiner design and analysis.

    Science.gov (United States)

    Tian, Yi; Lv, Lijun; Jiang, Liwei; Wang, Xin; Li, Yanhong; Yu, Haiming; Feng, Xiaochen; Li, Qi; Zhang, Li; Li, Zhuo

    2013-08-01

    We investigated the design method of an infrared (IR)/microwave (MW) micromirror array type of beam combiner. The size of micromirror is in microscopic levels and comparable to MW wavelengths, so that the MW will not react in these dimensions, whereas the much shorter optical wavelengths will be reflected by them. Hence, the MW multilayered substrate was simplified and designed using transmission line theory. The beam combiner used an IR wavefront-division imaging technique to reflect the IR radiation image to the unit under test (UUT)'s pupil in a parallel light path. In addition, the boresight error detected by phase monopulse radar was analyzed using a moment-of method (MoM) and multilevel fast multipole method (MLFMM) acceleration technique. The boresight error introduced by the finite size of the beam combiner was less than 1°. Finally, in order to verify the wavefront-division imaging technique, a prototype of a micromirror array was fabricated, and IR images were tested. The IR images obtained by the thermal imager verified the correctness of the wavefront-division imaging technique.

  9. A novel stretchable micro-electrode array (SMEA) design for directional stretching of cells

    Science.gov (United States)

    Khoshfetrat Pakazad, S.; Savov, A.; van de Stolpe, A.; Dekker, R.

    2014-03-01

    Stretchable micro-electrode arrays (SMEAs) are useful tools to study the electrophysiology of living cells seeded on the devices under mechanical stimulation. For such applications, the SMEAs are used as cell culture substrates; therefore, the surface topography and mechanical properties of the devices should be minimally affected by the embedded stretchable electrical interconnects. In this paper, a novel design and micro-fabrication technology for a pneumatically actuated SMEA are presented to achieve stretchability with minimal surface area dedicated to the electrical interconnects and a well-defined surface strain distribution combined with integrated diverse micro-patterns to enable alignment and directional stretching of cells. The special mechanical design also enables the SMEA to have a prolonged electro-mechanical fatigue life time required for long-term cyclic stretching of the cell cultures (stable resistance of electrical interconnects for more than 160 thousand cycles of 20% stretching and relaxing). The proposed fabrication method is based on the state of the art micro-fabrication techniques and materials and circumvents the processing problems associated with using unconventional methods and materials to fabricate stretchable electrode arrays. The electrochemical impedance spectroscopy characterization of the SMEA shows 4.5 MΩ impedance magnitude at 1 kHz for a TiN electrode 12 um in diameter. Cell culture experiments demonstrate the robustness of the SMEAs for long-term culturing experiments and compatibility with inverted fluorescent microscopy.

  10. Design, optimization and evaluation of a "smart" pixel sensor array for low-dose digital radiography

    Science.gov (United States)

    Wang, Kai; Liu, Xinghui; Ou, Hai; Chen, Jun

    2016-04-01

    Amorphous silicon (a-Si:H) thin-film transistors (TFTs) have been widely used to build flat-panel X-ray detectors for digital radiography (DR). As the demand for low-dose X-ray imaging grows, a detector with high signal-to-noise-ratio (SNR) pixel architecture emerges. "Smart" pixel is intended to use a dual-gate photosensitive TFT for sensing, storage, and switch. It differs from a conventional passive pixel sensor (PPS) and active pixel sensor (APS) in that all these three functions are combined into one device instead of three separate units in a pixel. Thus, it is expected to have high fill factor and high spatial resolution. In addition, it utilizes the amplification effect of the dual-gate photosensitive TFT to form a one-transistor APS that leads to a potentially high SNR. This paper addresses the design, optimization and evaluation of the smart pixel sensor and array for low-dose DR. We will design and optimize the smart pixel from the scintillator to TFT levels and validate it through optical and electrical simulation and experiments of a 4x4 sensor array.

  11. Design of a Printed Dipole Antenna Array for a Passive Radar System

    Directory of Open Access Journals (Sweden)

    Peter Knott

    2013-01-01

    Full Text Available Passive radar (or Passive Coherent Localisation is an advancing technology for covert operation. The signal transmitted from sources of opportunity such as radio or TV stations is used as illumination for a certain area of interest. Part of the transmitted signal is reflected by radar targets, for example, moving objects such as vehicles or aircraft. Typical radar parameters are derived from the comparison between the direct line-of-sight from the transmitter and the signal scattered from the target object. Such systems are an attractive addition to existing active radar stations because they have the potential to discover low-flying and low-observable targets and no active radar transmitter is required. Printed dipole antennas are very attractive antenna elements for such systems because of their easy fabrication, low-cost, polarisation purity, and low-profile properties. The present paper describes the design of an antenna array using printed dipole elements with flared arms for a passive radar system operating in the GSM900 frequency range. Isolated antenna elements and a small uniform linear antenna array were designed and optimised using computational electromagnetic methods. Several prototypes have been fabricated on conventional microwave PCB substrate material. Preliminary measurement results for antenna matching and far-field radiation patterns are shown.

  12. Design and Simulation of Array of Rectangular Micro Cantilevers Piezoelectric Energy Harvester

    Directory of Open Access Journals (Sweden)

    Komal Kumari

    2016-09-01

    Full Text Available This paper presents the design, analysis and simulation of MEMS based array of bimorph rectangular microcantilever piezoelectric energy harvester structure with and without tip mass, to analyze their sensitivity. The microcantilever beams are made up of piezoelectric material and Aluminium as a substrate material. The analytical simulation of design is done by FEM (COMSOL Multiphysics. The simulation results of bimorph cantilever structure, applied force of 0.1 N and obtained end displacement and electric potential developed are given. The analytical model of the cantilever beam will be analyzed and the process of its construction will be discussed. The changes in the sensitivity of a cantilever beam with respect to change in its shape for the same applied force of 0.1N are denoted.

  13. Design and optimization of multi-class series-parallel linear electromagnetic array artificial muscle.

    Science.gov (United States)

    Li, Jing; Ji, Zhenyu; Shi, Xuetao; You, Fusheng; Fu, Feng; Liu, Ruigang; Xia, Junying; Wang, Nan; Bai, Jing; Wang, Zhanxi; Qin, Xiansheng; Dong, Xiuzhen

    2014-01-01

    Skeletal muscle exhibiting complex and excellent precision has evolved for millions of years. Skeletal muscle has better performance and simpler structure compared with existing driving modes. Artificial muscle may be designed by analyzing and imitating properties and structure of skeletal muscle based on bionics, which has been focused on by bionic researchers, and a structure mode of linear electromagnetic array artificial muscle has been designed in this paper. Half sarcomere is the minimum unit of artificial muscle and electromagnetic model has been built. The structural parameters of artificial half sarcomere actuator were optimized to achieve better movement performance. Experimental results show that artificial half sarcomere actuator possesses great motion performance such as high response speed, great acceleration, small weight and size, robustness, etc., which presents a promising application prospect of artificial half sarcomere actuator.

  14. Design and synthesis of flexible switching 1 × 2 antenna array on Kapton substrate

    Science.gov (United States)

    Georges Rabobason, Yvon; Rigas, Grigorios; Swaisaenyakorn, Srijittar; Mirkhaydarov, Bobur; Ravelo, Blaise; Shkunov, Maxim; Young, Paul; Benjelloun, Nabil

    2016-06-01

    Flexible front- and back-end RF/analogue system antennas were recently emerged. However, little flexible antenna system design is available so far, in planar hybrid technology with surface mounted components. This paper describes the design feasibility of flexible switching 1 × 2 antenna array system. It acts as a switching antenna implemented in hexapole configuration. The system is comprised of a key element RF switch terminated by two identical patch antennas associated to half-wave elementary transmission lines (TLs). A detailed theory illustrating the global S-parameter model determination in function of the given RF-switch return and insertion losses is established. In difference to the conventional microwave circuit theory, the proposed equivalent S-parameter model is originally built with the non-standard optimized antenna load. Thus, the synthesis method of the terminal antenna input impedance and the output access line characteristic impedance is formulated in function of the specified return and optimal transmission losses. The design method and theoretical approach feasibility is verified with the demonstrator of flexible switching 1 × 2 antenna array printed on Kapton substrate. The circuit prototype is implemented in hybrid planar technology integrating patch antenna operating at about 6 GHz and a packaged GaAs RF switch associated to the RF/DC signal decoupling accessory mounted surface components. Simulations of the designed circuit transmission and isolation losses from 5.5 GHz to 7 GHz were carried out by using the commercial RF switch S-parameter touchstone model provided by the manufacturer. The simulated and measured return losses are compared and discussed. Then, the measured radiation patterns confirm the proposed switched antenna concept feasibility.

  15. Generation of a genomic tiling array of the human Major Histocompatibility Complex (MHC and its application for DNA methylation analysis

    Directory of Open Access Journals (Sweden)

    Ottaviani Diego

    2008-05-01

    Full Text Available Abstract Background The major histocompatibility complex (MHC is essential for human immunity and is highly associated with common diseases, including cancer. While the genetics of the MHC has been studied intensively for many decades, very little is known about the epigenetics of this most polymorphic and disease-associated region of the genome. Methods To facilitate comprehensive epigenetic analyses of this region, we have generated a genomic tiling array of 2 Kb resolution covering the entire 4 Mb MHC region. The array has been designed to be compatible with chromatin immunoprecipitation (ChIP, methylated DNA immunoprecipitation (MeDIP, array comparative genomic hybridization (aCGH and expression profiling, including of non-coding RNAs. The array comprises 7832 features, consisting of two replicates of both forward and reverse strands of MHC amplicons and appropriate controls. Results Using MeDIP, we demonstrate the application of the MHC array for DNA methylation profiling and the identification of tissue-specific differentially methylated regions (tDMRs. Based on the analysis of two tissues and two cell types, we identified 90 tDMRs within the MHC and describe their characterisation. Conclusion A tiling array covering the MHC region was developed and validated. Its successful application for DNA methylation profiling indicates that this array represents a useful tool for molecular analyses of the MHC in the context of medical genomics.

  16. Design Methodology of a Dual-Halbach Array Linear Actuator with Thermal-Electromagnetic Coupling.

    Science.gov (United States)

    Eckert, Paulo Roberto; Flores Filho, Aly Ferreira; Perondi, Eduardo; Ferri, Jeferson; Goltz, Evandro

    2016-01-01

    This paper proposes a design methodology for linear actuators, considering thermal and electromagnetic coupling with geometrical and temperature constraints, that maximizes force density and minimizes force ripple. The method allows defining an actuator for given specifications in a step-by-step way so that requirements are met and the temperature within the device is maintained under or equal to its maximum allowed for continuous operation. According to the proposed method, the electromagnetic and thermal models are built with quasi-static parametric finite element models. The methodology was successfully applied to the design of a linear cylindrical actuator with a dual quasi-Halbach array of permanent magnets and a moving-coil. The actuator can produce an axial force of 120 N and a stroke of 80 mm. The paper also presents a comparative analysis between results obtained considering only an electromagnetic model and the thermal-electromagnetic coupled model. This comparison shows that the final designs for both cases differ significantly, especially regarding its active volume and its electrical and magnetic loading. Although in this paper the methodology was employed to design a specific actuator, its structure can be used to design a wide range of linear devices if the parametric models are adjusted for each particular actuator.

  17. Stochastic segmentation models for array-based comparative genomic hybridization data analysis.

    Science.gov (United States)

    Lai, Tze Leung; Xing, Haipeng; Zhang, Nancy

    2008-04-01

    Array-based comparative genomic hybridization (array-CGH) is a high throughput, high resolution technique for studying the genetics of cancer. Analysis of array-CGH data typically involves estimation of the underlying chromosome copy numbers from the log fluorescence ratios and segmenting the chromosome into regions with the same copy number at each location. We propose for the analysis of array-CGH data, a new stochastic segmentation model and an associated estimation procedure that has attractive statistical and computational properties. An important benefit of this Bayesian segmentation model is that it yields explicit formulas for posterior means, which can be used to estimate the signal directly without performing segmentation. Other quantities relating to the posterior distribution that are useful for providing confidence assessments of any given segmentation can also be estimated by using our method. We propose an approximation method whose computation time is linear in sequence length which makes our method practically applicable to the new higher density arrays. Simulation studies and applications to real array-CGH data illustrate the advantages of the proposed approach.

  18. Design of DSP-based high-power digital solar array simulator

    Science.gov (United States)

    Zhang, Yang; Liu, Zhilong; Tong, Weichao; Feng, Jian; Ji, Yibo

    2013-12-01

    To satisfy rigid performance specifications, a feedback control was presented for zoom optical lens plants. With the increasing of global energy consumption, research of the photovoltaic(PV) systems get more and more attention. Research of the digital high-power solar array simulator provides technical support for high-power grid-connected PV systems research.This paper introduces a design scheme of the high-power digital solar array simulator based on TMS320F28335. A DC-DC full-bridge topology was used in the system's main circuit. The switching frequency of IGBT is 25kHz.Maximum output voltage is 900V. Maximum output current is 20A. Simulator can be pre-stored solar panel IV curves.The curve is composed of 128 discrete points .When the system was running, the main circuit voltage and current values was feedback to the DSP by the voltage and current sensors in real-time. Through incremental PI,DSP control the simulator in the closed-loop control system. Experimental data show that Simulator output voltage and current follow a preset solar panels IV curve. In connection with the formation of high-power inverter, the system becomes gridconnected PV system. The inverter can find the simulator's maximum power point and the output power can be stabilized at the maximum power point (MPP).

  19. Design and analysis of a novel virtual gyroscope with multi-gyroscope and accelerometer array

    Science.gov (United States)

    Luo, Zhang; Liu, Chaojun; Yu, Shuai; Zhang, Shengzhi; Liu, Sheng

    2016-08-01

    A new virtual gyroscope with multi-gyroscope and accelerometer array (MGAA) is proposed in this article for improving the performance of angular rate measurement. Outputs of the virtual gyroscope are obtained by merging the signals from gyroscopes and accelerometers through a novel Kalman filter, which intentionally takes the consideration of the MEMS gyroscope error model and kinematics theory of rigid body. A typical configuration of the virtual gyroscope, consisting of four accelerometers and three gyroscopes mounted on designated positions, is initiated to verify the feasibility of the virtual gyroscope with MGAA. Static test and dynamic test are performed subsequently to evaluate its performance. The angular random walk (ARW) and bias instability, two static performance parameters of gyroscope, are reduced from 0.019°/√s and 14.4°/h to 0.0074°/√s and 8.7°/h, respectively. The average root mean square error (RMSE) is reduced from 0.274°/s to 0.133°/s under dynamic test. Compared with the published multi-gyroscope array method, the virtual gyroscope proposed here has a better performance both in static and dynamic tests, with improvement factors of ARW and RMSE about 44.1% and 44.5% higher, respectively.

  20. G3 Assisted Rational Design of Chemical Sensor Array Using Carbonitrile Neutral Receptors

    Directory of Open Access Journals (Sweden)

    Yatimah Alias

    2013-10-01

    Full Text Available Combined computational and experimental strategies for the systematic design of chemical sensor arrays using carbonitrile neutral receptors are presented. Binding energies of acetonitrile, n-pentylcarbonitrile and malononitrile with Ca(II, Mg(II, Be(II and H+ have been investigated with the B3LYP, G3, CBS-QB3, G4 and MQZVP methods, showing a general trend H+ > Be(II > Mg(II > Ca(II. Hydrogen bonding, donor-acceptor and cation-lone pair electron simple models were employed in evaluating the performance of computational methods. Mg(II is bound to acetonitrile in water by 12.5 kcal/mol, and in the gas phase the receptor is more strongly bound by 33.3 kcal/mol to Mg(II compared to Ca(II. Interaction of bound cations with carbonitrile reduces the energies of the MOs involved in the proposed σ-p conjugated network. The planar malononitrile-Be(II complex possibly involves a π-network with a cationic methylene carbon. Fabricated potentiometric chemical sensors show distinct signal patterns that can be exploited in sensor array applications.

  1. Design and Fabrication of 2-DOF Micromirror Array Based on Electro-Thermal Actuators

    Institute of Scientific and Technical Information of China (English)

    JIANG Jian-liang; HILLERINGMANN Ulrich

    2006-01-01

    With surface- and bulk-micromachining, an 8 × 8 mirrors array is designed, fabricated and tested,which is based on electro-thermal actuators and can be addressed individually. The micromirror is squareshaped, 4-corner-actuated. Its dimension is 200 μm × 200 μm. The substrate below it is caved away to ensure a tilt at an angle as large as possible. To protect the etch-sensitive features on the front side of the wafer undamaged during wet deep silicon etch on the backside, the wax protective coating process is used. Mirror actuated by powering an alternative pair of heaters will tilt in 2-DOF. If its 4 cantilevers/heaters are powered synchronously, it will move in a piston mode. The effective arrays are more than 80 % out of the three finished wafers. When the ramp voltage frequency applied to a pair of neighboring cantilevers is 5 Hz at 10 V, the average tilting angle can be ± 8°.

  2. A novel IR polarization imaging system designed by a four-camera array

    Science.gov (United States)

    Liu, Fei; Shao, Xiaopeng; Han, Pingli

    2014-05-01

    A novel IR polarization staring imaging system employing a four-camera-array is designed for target detection and recognition, especially man-made targets hidden in complex battle field. The design bases on the existence of the difference in infrared radiation's polarization characteristics, which is particularly remarkable between artificial objects and the natural environment. The system designed employs four cameras simultaneously to capture the00 polarization difference to replace the commonly used systems engaging only one camera. Since both types of systems have to obtain intensity images in four different directions (I0 , I45 , I90 , I-45 ), the four-camera design allows better real-time capability and lower error without the mechanical rotating parts which is essential to one-camera systems. Information extraction and detailed analysis demonstrate that the caught polarization images include valuable polarization information which can effectively increase the images' contrast and make it easier to segment the target even the hidden target from various scenes.

  3. Array-based comparative genomic hybridization for genome-wide screening of DNA copy number in bladder tumors.

    NARCIS (Netherlands)

    Veltman, J.A.; Fridlyand, J.; Pejavar, S.; Olshen, A.B.; Korkola, J.E.; Vries, S. de; Carroll, P.; Kuo, W.L.; Pinkel, D.; Albertson, D.; Cordon-Cardo, C.; Jain, A.N.; Waldman, F.M.

    2003-01-01

    Genome-wide copy number profiles were characterized in 41 primary bladder tumors using array-based comparative genomic hybridization (array CGH). In addition to previously identified alterations in large chromosomal regions, alterations were identified in many small genomic regions, some with high-l

  4. Progress in Monte Carlo design and optimization of the Cherenkov Telescope Array

    CERN Document Server

    Bernlöhr, K; Becherini, Y; Bigas, O Blanch; Bouvier, A; Carmona, E; Colin, P; Decerprit, G; Di Pierro, F; Dubois, F; Farnier, C; Funk, S; Hermann, G; Hinton, J A; Humensky, T B; Jogler, T; Khélifi, B; Kihm, T; Komin, N; Lenain, J -P; López-Coto, R; Maier, G; Mazin, D; Medina, M C; Moralejo, A; Moderski, R; Nolan, S J; Ohm, S; Wilhelmi, E de Oña; Parsons, R D; Arribas, M Paz; Pedaletti, G; Pita, S; Prokoph, H; Rulten, C B; Schwanke, U; Shayduk, M; Stamatescu, V; Vallania, P; Vorobiov, S; Wischnewski, R; Wood, M; Yoshikoshi, T; Zech, A

    2013-01-01

    The Cherenkov Telescope Array (CTA) will be an instrument covering a wide energy range in very-high-energy (VHE) gamma rays. CTA will include several types of telescopes, in order to optimize the performance over the whole energy range. Both large-scale Monte Carlo (MC) simulations of CTA super-sets (including many different possible CTA layouts as sub-sets) and smaller-scale simulations dedicated to individual aspects were carried out and are on-going. We summarize results of the prior round of large-scale simulations, show where the design has now evolved beyond the conservative assumptions of the prior round and present first results from the on-going new round of MC simulations.

  5. Design and fabrication of a 5 MHz ultrasonic phased array probe with curved transducer

    Science.gov (United States)

    Fischer, Julia; Herzog, Thomas; Walter, Susan; Heuer, Henning

    2013-05-01

    A 5 MHz, 16-element phased array concave ultrasonic probe for non-destructive testing has been designed, fabricated and tested. To improve the probes performance its curvature, as opposed to present solutions, was not obtained by adding a corresponding delay wedge, but rather by manufacturing the functional elements (i.e. active material, matching layer) with a curvature. The piezoelectric material used here was a 1-3 composite material made of PZT. The finished probe was tested on a steel half circle with the corresponding radius (100 mm) and on the Olympus PAUT test piece. Good results could be obtained. Three transverse holes with a diameter of 1 mm and a distance of 5 mm to one another could be detected and resolved.

  6. Design Concepts For A Long Pulse Upgrade For The DIII-D Fast Wave Antenna Array

    Energy Technology Data Exchange (ETDEWEB)

    Ryan, Philip Michael [ORNL; Baity Jr, F Wallace [ORNL; Caughman, John B [ORNL; Goulding, Richard Howell [ORNL; Hosea, J. [Princeton Plasma Physics Laboratory (PPPL); Greenough, Nevell [Princeton Plasma Physics Laboratory (PPPL); Nagy, Alex [Princeton Plasma Physics Laboratory (PPPL); Pinsker, R. [General Atomics; Rasmussen, David A [ORNL

    2009-01-01

    A goal in the 5-year plan for the fast wave program on DIII-D is to couple a total of 3.6 MW of RF power into a long pulse, H-mode plasma for central electron heating. The present short-pulse 285/300 antenna array would need to be replaced with one capable of at least 1.2 MW, 10 s operation at 60 MHz into an H-mode (low resistive loading) plasma condition. The primary design under consideration uses a poloidally-segmented strap (3 sections) for reduced strap voltage near the plasma/Faraday screen region. Internal capacitance makes the antenna structure self-resonant at 60 MHz, strongly reducing peak E-fields in the vacuum coax and feed throughs.

  7. Designing shielded radio-frequency phased-array coils for magnetic resonance imaging

    Institute of Scientific and Technical Information of China (English)

    Xu Wen-Long; Zhang Ju-Cheng; Li Xia; Xu Bing-Qiao; Tao Gui-Sheng

    2013-01-01

    In this paper,an approach to the design of shielded radio-frequency (RF) phased-array coils for magnetic resonance imaging (MRI) is proposed.The target field method is used to find current densities distributed on primary and shield coils.The stream function technique is used to discretize current densities and to obtain the winding patterns of the coils.The corresponding highly ill-conditioned integral equation is solved by the Tikhonov regularization with a penalty function related to the minimum curvature.To balance the simplicity and smoothness with the homogeneity of the magnetic field of the coil's winding pattern,the selection of a penalty factor is discussed in detail.

  8. 新的设计模式——数组工厂和数组原型模式%New design patterns: array factory and array prototype

    Institute of Scientific and Technical Information of China (English)

    彭世康; 周逢权

    2012-01-01

    为了去除程序中的简单开关分支结构,提出了一种新的重构方法——“以数组取代类型码”重构手法.将这种新的重构方法用于重构简单工厂模式,就得到了一种新的软件设计模式——“数组工厂”模式.数组工厂模式适用于实例化某个具体类在软件执行流程的任意时刻只存在一个实体的对象;对于软件执行流程中可以同时存在多个实体的具体类对象的实例化工作,通过改造数组工厂模式,提出了“数组原型”模式.数组工厂和数组原型模式是两种结构优良的创建型设计模式,它们免除了简单工厂方法中的开关分支语句,具有优化代码结构、提高程序执行性能等优点,并且完全符合开放—封闭原则.%A new design pattern named "array factory" was produced when the switch statements in simple factory method were refactored by "replace type code with array". Array factory pattern was applied to instantiate the object that has only one entity in software. Array prototype pattern was proposed for instantiating multiple objects of one class by improving array factory pattern. As two excellent creation patterns, array factory and array prototype patterns not only have almost all the benefits of simple factory pattern, but also eliminate the switch statements, optimize the structure of the program and improve the processing performance of the software, and they meet the open-closed principle.

  9. Application of Correlation and Coherency Methods to Naqu Seismic Array Design

    Institute of Scientific and Technical Information of China (English)

    Hao Chunyue; Zheng Zhong

    2006-01-01

    The waveform data recorded during the site survey of the Naqu seismic array in Aug. 2004 were processed by the author. According to the relativity of site pairs in time and frequency domains, the reference values of the inner ring and outer ring were determined. The author evaluated the array deployed for site survey as the primary array, and the results show that the resolution of the primary array is high enough to locate earthquakes precisely.

  10. Design Studies for a VUV--Soft X-ray Free-Electron Laser Array

    Energy Technology Data Exchange (ETDEWEB)

    Corlett, J.; Baptiste, K.; Byrd, J.M.; Denes, P.; Falcone, R.; Kirz, J.; McCurdy, W.; Padmore, H.; Penn, G.; Qiang, J.; Robin, D.; Sannibale, F.; Schoenlein, R.; Staples, J.; Steier, C.; Venturnini, M.; Wan, W.; Wells, R.; Wilcox, R.; Zholents, A.

    2009-08-04

    Several recent reports have identified the scientific requirements for a future soft X-ray light source [1, 2, 3, 4, 5], and a high-repetition-rate free-electron laser (FEL) facility responsive to them is being studied at Lawrence Berkeley National Laboratory (LBNL) [6]. The facility is based on a continuous-wave (CW) superconducting linear accelerator with beam supplied by a high-brightness, high-repetition-rate photocathode electron gun operating in CW mode, and on an array of FELs to which the accelerated beam is distributed, each operating at high repetition rate and with even pulse spacing. Dependent on the experimental requirements, the individualFELs may be configured for either self-amplified spontaneous emission (SASE), seeded highgain harmonic generation (HGHG), echo-enabled harmonic generation (EEHG), or oscillator mode of operation, and will produce high peak and average brightness x-rays with a flexible pulse format ranging from sub-femtoseconds to hundreds of femtoseconds. This new light source would serve a broad community of scientists in many areas of research, similar to existing utilization of storage ring based light sources. To reduce technical risks and constructioncosts, accelerator research, development, and design studies at LBNL target the most critical components and systems of the facility. We are developing a high-repetition-rate low-emittance electron gun, high quantum efficiency photocathodes, and have embarked on design and optimization of the electron beam accelerator, FEL switchyard, and array of FELs. We continue our work on precision timing and synchronization systems critical for time-resolved experiments using pump-probe techniques.

  11. Transport and collision dynamics in periodic asymmetric obstacle arrays: Rational design of microfluidic rare-cell immunocapture devices

    Science.gov (United States)

    Gleghorn, Jason P.; Smith, James P.; Kirby, Brian J.

    2013-09-01

    Microfluidic obstacle arrays have been used in numerous applications, and their ability to sort particles or capture rare cells from complex samples has broad and impactful applications in biology and medicine. We have investigated the transport and collision dynamics of particles in periodic obstacle arrays to guide the design of convective, rather than diffusive, transport-based immunocapture microdevices. Ballistic and full computational fluid dynamics simulations are used to understand the collision modes that evolve in cylindrical obstacle arrays with various geometries. We identify previously unrecognized collision mode structures and differential size-based collision frequencies that emerge from these arrays. Previous descriptions of transverse displacements that assume unidirectional flow in these obstacle arrays cannot capture mode transitions properly as these descriptions fail to capture the dependence of the mode transitions on column spacing and the attendant change in the flow field. Using these analytical and computational simulations, we elucidate design parameters that induce high collision rates for all particles larger than a threshold size or selectively increase collision frequencies for a narrow range of particle sizes within a polydisperse population. Furthermore, we investigate how the particle Péclet number affects collision dynamics and mode transitions and demonstrate that experimental observations from various obstacle array geometries are well described by our computational model.

  12. A new sparse design method on phased array-based acoustic emission sensor for partial discharge detection

    Science.gov (United States)

    Xie, Qing; Cheng, Shuyi; Lü, Fangcheng; Li, Yanqing

    2014-03-01

    The acoustic detecting performance of a partial discharge (PD) ultrasonic sensor array can be improved by increasing the number of array elements. However, it will increase the complexity and cost of the PD detection system. Therefore, a sparse sensor with an optimization design can be chosen to ensure good acoustic performance. In this paper, first, a quantitative method is proposed for evaluating the acoustic performance of a square PD ultrasonic array sensor. Second, a method of sparse design is presented to combine the evaluation method with the chaotic monkey algorithm. Third, an optimal sparse structure of a 3 × 3 square PD ultrasonic array sensor is deduced. It is found that, under different sparseness and sparse structure, the main beam width of the directivity function shows a small variation, while the sidelobe amplitude shows a bigger variation. For a specific sparseness, the acoustic performance under the optimal sparse structure is close to that using a full array. Finally, some simulations based on the above method show that, for certain sparseness, the sensor with the optimal sparse structure exhibits superior positioning accuracy compared to that with a stochastic one. The sensor array structure may be chosen according to the actual requirements for an actual engineering application.

  13. Design and operation of a 2-D thin-film semiconductor neutron detector array for use as a beamport monitor

    Energy Technology Data Exchange (ETDEWEB)

    Unruh, Troy C.; Bellinger, Steven L. [SMART Laboratory, Kansas State University, Mechanical and Nuclear Engineering Department, Manhattan, KS 66506 (United States); Huddleston, David E. [Electronics Design Laboratory, Kansas State University, Manhattan, KS 66506 (United States); McNeil, Walter J.; Patterson, Eric [SMART Laboratory, Kansas State University, Mechanical and Nuclear Engineering Department, Manhattan, KS 66506 (United States); Sobering, Tim J. [Electronics Design Laboratory, Kansas State University, Manhattan, KS 66506 (United States); McGregor, Douglas S. [SMART Laboratory, Kansas State University, Mechanical and Nuclear Engineering Department, Manhattan, KS 66506 (United States)], E-mail: mcgregor@ksu.edu

    2009-06-01

    Silicon-based diodes coated with a thin film of neutron reactive materials have been shown to produce excellent low-efficiency neutron detectors. This work employs the same technology, but groups 25 equally sized and spaced diodes on a single 29 mm by 29 mm substrate. A 5x5 array was fabricated and coated with a thin film of {sup 6}LiF for use as a low-efficiency neutron beam monitor. The 5x5 neutron detector array is coupled to an array of amplifiers, allowing the response to be interpreted using a LabVIEW FPGA. The 5x5 array has been characterized in a diffracted neutron beam. This work is a part of on-going research to develop various designs of high- and low-efficiency semiconductor neutron detectors.

  14. Planar ESPAR Array Design with Nonsymmetrical Pattern by Means of Finite-Element Method, Domain Decomposition, and Spherical Wave Expansion

    Directory of Open Access Journals (Sweden)

    Jesús García

    2012-01-01

    Full Text Available The application of a 3D domain decomposition finite-element and spherical mode expansion for the design of planar ESPAR (electronically steerable passive array radiator made with probe-fed circular microstrip patches is presented in this work. A global generalized scattering matrix (GSM in terms of spherical modes is obtained analytically from the GSM of the isolated patches by using rotation and translation properties of spherical waves. The whole behaviour of the array is characterized including all the mutual coupling effects between its elements. This procedure has been firstly validated by analyzing an array of monopoles on a ground plane, and then it has been applied to synthesize a prescribed radiation pattern optimizing the reactive loads connected to the feeding ports of the array of circular patches by means of a genetic algorithm.

  15. Array-based comparative genomic hybridization is more informative than conventional karyotyping and fluorescence in situ hybridization in the analysis of first-trimester spontaneous abortion

    Directory of Open Access Journals (Sweden)

    Gao Jinsong

    2012-07-01

    Full Text Available Abstract Background Array-based comparative genomic hybridization (aCGH is a new technique for detecting submicroscopic deletions and duplications, and can overcome many of the limitations associated with classic cytogenetic analysis. However, its clinical use in spontaneous abortion needs comprehensive evaluation. We used aCGH to investigate chromosomal imbalances in 100 spontaneous abortions and compared the results with G-banding karyotyping and fluorescence in situ hybridization (FISH. Inconsistent results were verified by quantitative fluorescence PCR. Results Abnormalities were detected in 61 cases. aCGH achieved the highest detection rate (93.4%, 57/61 compared with traditional karyotyping (77%, 47/61 and FISH analysis (68.9%, 42/61. aCGH identified all chromosome abnormalities reported by traditional karyotyping and interphase FISH analysis, with the exception of four triploids. It also detected three additional aneuploidy cases in 37 specimens with ‘normal’ karyotypes, one mosaicism and 10 abnormalities in 14 specimens that failed to grow in vitro. Conclusions aCGH analysis circumvents many limitations in traditional karyotyping or FISH. The accuracy and efficiency of aCGH in spontaneous abortions highlights its clinical usefulness for the future. As aborted tissues have the potential to be contaminated with maternal cells, the threshold value of detection in aCGH should be lowered to avoid false negatives.

  16. Genomic characterization of some Iranian children with idiopathic mental retardation using array comparative genomic hybridization

    Directory of Open Access Journals (Sweden)

    Farkhondeh Behjati

    2013-01-01

    Full Text Available Background: Mental retardation (MR has a prevalence of 1-3% and genetic causes are present in more than 50% of patients. Chromosomal abnormalities are one of the most common genetic causes of MR and are responsible for 4-28% of mental retardation. However, the smallest loss or gain of material visible by standard cytogenetic is about 4 Mb and for smaller abnormalities, molecular cytogenetic techniques such as array comparative genomic hybridization (array CGH should be used. It has been shown that 15-25% of idiopathic MR (IMR has submicroscopic rearrangements detectable by array CGH. In this project, the genomic abnormalities were investigated in 32 MR patients using this technique. Materials and Methods: Patients with IMR with dysmorphism were investigated in this study. Karyotype analysis, fragile X and metabolic tests were first carried out on the patients. The copy number variation was then assessed in a total of 32 patients with normal results for the mentioned tests using whole genome oligo array CGH. Multiple ligation probe amplification was carried out as a confirmation test. Results: In total, 19% of the patients showed genomic abnormalities. This is reduced to 12.5% once the two patients with abnormal karyotypes (upon re-evaluation are removed. Conclusion: The array CGH technique increased the detection rate of genomic imbalances in our patients by 12.5%. It is an accurate and reliable method for the determination of genomic imbalances in patients with IMR and dysmorphism.

  17. Genome-wide mapping of copy number variation in humans: comparative analysis of high resolution array platforms.

    Directory of Open Access Journals (Sweden)

    Rajini R Haraksingh

    Full Text Available Accurate and efficient genome-wide detection of copy number variants (CNVs is essential for understanding human genomic variation, genome-wide CNV association type studies, cytogenetics research and diagnostics, and independent validation of CNVs identified from sequencing based technologies. Numerous, array-based platforms for CNV detection exist utilizing array Comparative Genome Hybridization (aCGH, Single Nucleotide Polymorphism (SNP genotyping or both. We have quantitatively assessed the abilities of twelve leading genome-wide CNV detection platforms to accurately detect Gold Standard sets of CNVs in the genome of HapMap CEU sample NA12878, and found significant differences in performance. The technologies analyzed were the NimbleGen 4.2 M, 2.1 M and 3×720 K Whole Genome and CNV focused arrays, the Agilent 1×1 M CGH and High Resolution and 2×400 K CNV and SNP+CGH arrays, the Illumina Human Omni1Quad array and the Affymetrix SNP 6.0 array. The Gold Standards used were a 1000 Genomes Project sequencing-based set of 3997 validated CNVs and an ultra high-resolution aCGH-based set of 756 validated CNVs. We found that sensitivity, total number, size range and breakpoint resolution of CNV calls were highest for CNV focused arrays. Our results are important for cost effective CNV detection and validation for both basic and clinical applications.

  18. 相控阵天线阵面测试平台软件设计%Software Design of Phased Array Antenna Array Testing Platform

    Institute of Scientific and Technical Information of China (English)

    万东成; 章国宝

    2016-01-01

    In modern large phased array radar,the number of transmitter and receiver components in the antenna is large. The system test is very cumbersome.In order to simplify the testing process and improve the efficiency of manual test,in the array front and TR components testing process,combining with computer software & hardware technologies,data processing technology,automatic test technology,by means of network communication,a set of antenna array surface general test plat-form is designed in this paper.%现代大型相控阵雷达中,天线内的发射和接收(TR)组件数目庞大,系统测试工作十分繁琐,为简化测试过程,提高测试效率,在阵面以及TR组件测试过程中,综合运用计算机软硬件技术、数据处理技术、自动测试技术,采用网络通信手段,设计了一套天线阵面通用测试平台。

  19. Electron lithography STAR design guidelines. Part 3: The mosaic transistor array applied to custom microprocessors. Part 4: Stores logic arrays, SLAs implemented with clocked CMOS

    Science.gov (United States)

    Trotter, J. D.

    1982-01-01

    The Mosaic Transistor Array is an extension of the STAR system developed by NASA which has dedicated field cells designed to be specifically used in semicustom microprocessor applications. The Sandia radiation hard bulk CMOS process is utilized in order to satisfy the requirements of space flights. A design philosophy is developed which utilizes the strengths and recognizes the weaknesses of the Sandia process. A style of circuitry is developed which incorporates the low power and high drive capability of CMOS. In addition the density achieved is better than that for classic CMOS, although not as good as for NMOS. The basic logic functions for a data path are designed with compatible interface to the STAR grid system. In this manner either random logic or PLA type structures can be utilized for the control logic.

  20. Millimeter-Wave Microstrip Antenna Array Design and an Adaptive Algorithm for Future 5G Wireless Communication Systems

    Directory of Open Access Journals (Sweden)

    Cheng-Nan Hu

    2016-01-01

    Full Text Available This paper presents a high gain millimeter-wave (mmW low-temperature cofired ceramic (LTCC microstrip antenna array with a compact, simple, and low-profile structure. Incorporating minimum mean square error (MMSE adaptive algorithms with the proposed 64-element microstrip antenna array, the numerical investigation reveals substantial improvements in interference reduction. A prototype is presented with a simple design for mass production. As an experiment, HFSS was used to simulate an antenna with a width of 1 mm and a length of 1.23 mm, resonating at 38 GHz. Two identical mmW LTCC microstrip antenna arrays were built for measurement, and the center element was excited. The results demonstrated a return loss better than 15 dB and a peak gain higher than 6.5 dBi at frequencies of interest, which verified the feasibility of the design concept.

  1. The Design of FPGA-based Array CCD Sensor Drive System

    Directory of Open Access Journals (Sweden)

    Chengtao Cai

    2014-01-01

    Full Text Available CCD Sensor is the crutial equipment for environment perception which is widely used in various fields such as surveilliance,vision navigation and machine vision. The commercial CCD device has been encapsulated the sensor driver inside which is not opened for secondary development. Even this mode facilitate the usage but it really can not content the customizable need. For solving this challenging but imperative issue, we designed a novel CCD sensor driver system which implement the efficient and effective image acquisition task in customizing approach. The working principle and driving timing sequence about ICX625AQA the interline CCD image sensor used in our system are discussed in detail. For handling with this data intensive task, a high performance Field Programmable GateArray (FPGA controller is used for data allocation and translation, the peripheral circuits including AD9974 and CXD3400 drive interface which process the horizontal signal and vertical signal, respectively. The designed system proposed at the end of this paper.

  2. PCI express bus design of large format array IRFPA high-speed acquisition system

    Science.gov (United States)

    Huang, Zewu; Zheng, Xing; Zeng, Xingxin; Liu, Ziji

    2012-10-01

    In this paper, a novel solution of PCI Express Bus was designed to improve the data transfer rate for large format array infrared imaging acquisition system. In this structure, an embedded PCI Express hard intellectual property (IP) block of Stratix IV GX FPGA was used, and the protocol stack module is totally compliant with PCI Express base specification Gen 2.0 which includes PHY-MAC, Data Link, and transaction layers. In order to communicate with CPU through computer PCIe root port, a pipeline structure was established with two SSRAMs to carry out the function of real-time data process. The DMA mode was adopted for the high-speed data transmission on the PCI Express Bus. Some other control logic parts such as detector drive signal generator - display controller and PCIe configuration module were also designed and introduced in this paper. According to the evaluation, the data transmission speed was up to 5.6Gbps, which means that this system could meet the qualifications of infrared imaging data acquisition. Compared with traditional infrared imaging data acquisition systems, this solution is more integrated and faster, so it is suitable for larger format and higher frame rate of infrared focal plane image acquisition in nowadays and future.

  3. Designing superhydrophobic disordered arrays of fibers with hierarchical roughness and low-surface-energy

    Science.gov (United States)

    Rawal, Amit; Sharma, Sumit; Kumar, Vijay; Saraswat, Harshvardhan

    2016-12-01

    Hierarchical roughness and low surface energy are the main criteria for designing superhydrophobic surfaces with extreme water repellency. Herein, we present a step-wise approach to devise three-dimensional (3D) superhydrophobic disordered arrays of fibers in the form of nonwoven mats exhibiting hierarchical surface roughness and low surface energy. Key design parameters in the form of roughness factors at multiple length scales for 3D nonwoven mats have been quantified. The contact angles have been predicted for each of the wetting regimes that exists for nonwoven mats with predefined level of hierarchical surface roughness and surface energy. Experimental realization of superhydrophobic mats was attained by decorating the highly hydrophilic nonwoven viscose fibers with ZnO rods that effectively modulated the surface roughness at multiple length scales and subsequently, the surface energy was lowered using fluorocarbon treatment. Synergistic effects of hierarchical roughness and surface energy have systematically increased the static water contact angle of nonwoven mat (up to 164°) and simultaneously, lowered the roll-off angle (≈11°).

  4. Conceptual design and infrastructure for the installation of the first AGATA sub-array at LNL

    Energy Technology Data Exchange (ETDEWEB)

    Gadea, A., E-mail: gadea@ific.uv.es [Istituto Nazionale di Fisica Nucleare, Laboratori Nazionali di Legnaro, Padova (Italy); IFIC, CSIC - Universitat de Valencia (Spain); Farnea, E. [Istituto Nazionale di Fisica Nucleare, Sezione di Padova, Padova (Italy); Valiente-Dobon, J.J. [Istituto Nazionale di Fisica Nucleare, Laboratori Nazionali di Legnaro, Padova (Italy); Million, B. [Istituto Nazionale di Fisica Nucleare, Sezione di Milano, Milano (Italy); Mengoni, D. [Dipartimento di Fisica dell' Universita di Padova, Padova (Italy); Istituto Nazionale di Fisica Nucleare, Sezione di Padova, Padova (Italy); University of the West of Scotland, Paisley (United Kingdom); Bazzacco, D.; Recchia, F. [Istituto Nazionale di Fisica Nucleare, Sezione di Padova, Padova (Italy); Dewald, A.; Pissulla, Th.; Rother, W. [Institut fuer Kernphysik der Universitaet zu Koeln, Koeln (Germany); Angelis, G. de [Istituto Nazionale di Fisica Nucleare, Laboratori Nazionali di Legnaro, Padova (Italy); Austin, A. [STFC Daresbury Laboratory, Daresbury, Warrington WA4 4AD (United Kingdom); Aydin, S. [Istituto Nazionale di Fisica Nucleare, Sezione di Padova, Padova (Italy); Department of Physics, Faculty of Science and Art, Aksaray University, Aksaray (Turkey); Badoer, S. [Istituto Nazionale di Fisica Nucleare, Laboratori Nazionali di Legnaro, Padova (Italy); Bellato, M. [Istituto Nazionale di Fisica Nucleare, Sezione di Padova, Padova (Italy); Benzoni, G. [Istituto Nazionale di Fisica Nucleare, Sezione di Milano, Milano (Italy); Berti, L. [Istituto Nazionale di Fisica Nucleare, Laboratori Nazionali di Legnaro, Padova (Italy); Beunard, R. [GANIL, CEA/DSM-CNRS/IN2P3, Caen (France); Birkenbach, B. [Institut fuer Kernphysik der Universitaet zu Koeln, Koeln (Germany); Bissiato, E. [Istituto Nazionale di Fisica Nucleare, Laboratori Nazionali di Legnaro, Padova (Italy); and others

    2011-10-21

    The first implementation of the AGATA spectrometer consisting of five triple germanium detector clusters has been installed at Laboratori Nazionali di Legnaro, INFN. This setup has two major goals, the first one is to validate the {gamma}-tracking concept and the second is to perform an experimental physics program using the stable beams delivered by the Tandem-PIAVE-ALPI accelerator complex. A large variety of physics topics will be addressed during this campaign, aiming to investigate both neutron and proton-rich nuclei. The setup has been designed to be coupled with the large-acceptance magnetic-spectrometer PRISMA. Therefore, the in-beam prompt {gamma} rays detected with AGATA will be measured in coincidence with the products of multinucleon-transfer and deep-inelastic reactions measured by PRISMA. Moreover, the setup is versatile enough to host ancillary detectors, including the heavy-ion detector DANTE, the {gamma}-ray detector array HELENA, the Cologne plunger for lifetime measurements and the Si-pad telescope TRACE. In this paper the design, characteristics and performance figures of the setup will be described.

  5. Microdeletion and microduplication analysis of chinese conotruncal defects patients with targeted array comparative genomic hybridization.

    Directory of Open Access Journals (Sweden)

    Xiaohui Gong

    Full Text Available OBJECTIVE: The current study aimed to develop a reliable targeted array comparative genomic hybridization (aCGH to detect microdeletions and microduplications in congenital conotruncal defects (CTDs, especially on 22q11.2 region, and for some other chromosomal aberrations, such as 5p15-5p, 7q11.23 and 4p16.3. METHODS: Twenty-seven patients with CTDs, including 12 pulmonary atresia (PA, 10 double-outlet right ventricle (DORV, 3 transposition of great arteries (TGA, 1 tetralogy of Fallot (TOF and one ventricular septal defect (VSD, were enrolled in this study and screened for pathogenic copy number variations (CNVs, using Agilent 8 x 15K targeted aCGH. Real-time quantitative polymerase chain reaction (qPCR was performed to test the molecular results of targeted aCGH. RESULTS: Four of 27 patients (14.8% had 22q11.2 CNVs, 1 microdeletion and 3 microduplications. qPCR test confirmed the microdeletion and microduplication detected by the targeted aCGH. CONCLUSION: Chromosomal abnormalities were a well-known cause of multiple congenital anomalies (MCA. This aCGH using arrays with high-density coverage in the targeted regions can detect genomic imbalances including 22q11.2 and other 10 kinds CNVs effectively and quickly. This approach has the potential to be applied to detect aneuploidy and common microdeletion/microduplication syndromes on a single microarray.

  6. The design, implementation, and performance of the Atro-H SXS calorimeter array and anti-coincidence detector

    Science.gov (United States)

    Kilbourne, Caroline A.; Adams, Joseph S.; Brekosky, Regis P.; Chervenak, James A.; Chiao, Meng P.; Eckart, Megan E.; Figueroa-Feliciano, Enectali; Galeazzi, Massimiliano; Grein, Christoph; Jhabvala, Christine A.; Kelley, Richard L.; Kelly, Daniel P.; Leutenegger, Maurice A.; McCammon, Dan; Porter, F. S.; Szymkowiak, Andrew E.; Watanabe, Tomomi; Zhao, Jun

    2016-07-01

    The calorimeter array of the JAXA Astro-H (renamed Hitomi) Soft X-ray Spectrometer (SXS) was designed to provide unprecedented spectral resolution of spatially extended cosmic x-ray sources and of all cosmic x-ray sources in the Fe-K band around 6 keV, enabling essential plasma diagnostics. The SXS has a square array of 36 microcalorimeters at the focal plane. These calorimeters consist of ion-implanted silicon thermistors and HgTe thermalizing x-ray absorbers. These devices have demonstrated a resolution of better than 4.5 eV at 6 keV when operated at a heat-sink temperature of 50 mK. We will discuss the basic physical parameters of this array, including the array layout, thermal conductance of the link to the heat sink, resistance function, absorber details, and means of attaching the absorber to the thermistorbearing element. We will also present the thermal characterization of the whole array, including thermal conductance and crosstalk measurements and the results of pulsing the frame temperature via alpha particles, heat pulses, and the environmental background. A silicon ionization detector is located behind the calorimeter array and serves to reject events due to cosmic rays. We will briefly describe this anti-coincidence detector and its performance.

  7. Design of Multilevel Sequential Rotation Feeding Networks Used for Circularly Polarized Microstrip Antenna Arrays

    Directory of Open Access Journals (Sweden)

    Aixin Chen

    2012-01-01

    Full Text Available Sequential rotation feeding networks can significantly improve performance of the circularly polarized microstrip antenna array. In this paper, single, double, and multiple series-parallel sequential rotation feeding networks are examined. Compared with conventional parallel feeding structures, these multilevel feeding techniques present reduction of loss, increase of bandwidth, and improvement of radiation pattern and polarization purity. By using corner-truncated square patch as the array element and adopting appropriate level of sequential rotation series-parallel feeding structures as feeding networks, microstrip arrays can generate excellent circular polarization (CP over a relatively wide frequency band. They can find wide applications in phased array radar and satellite communication systems.

  8. Exome sequencing of germline DNA from non-BRCA1/2 familial breast cancer cases selected on the basis of aCGH tumor profiling.

    Directory of Open Access Journals (Sweden)

    Florentine S Hilbers

    Full Text Available The bulk of familial breast cancer risk (∼70% cannot be explained by mutations in the known predisposition genes, primarily BRCA1 and BRCA2. Underlying genetic heterogeneity in these cases is the probable explanation for the failure of all attempts to identify further high-risk alleles. While exome sequencing of non-BRCA1/2 breast cancer cases is a promising strategy to detect new high-risk genes, rational approaches to the rigorous pre-selection of cases are needed to reduce heterogeneity. We selected six families in which the tumours of multiple cases showed a specific genomic profile on array comparative genomic hybridization (aCGH. Linkage analysis in these families revealed a region on chromosome 4 with a LOD score of 2.49 under homogeneity. We then analysed the germline DNA of two patients from each family using exome sequencing. Initially focusing on the linkage region, no potentially pathogenic variants could be identified in more than one family. Variants outside the linkage region were then analysed, and we detected multiple possibly pathogenic variants in genes that encode DNA integrity maintenance proteins. However, further analysis led to the rejection of all variants due to poor co-segregation or a relatively high allele frequency in a control population. We concluded that using CGH results to focus on a sub-set of families for sequencing analysis did not enable us to identify a common genetic change responsible for the aggregation of breast cancer in these families. Our data also support the emerging view that non-BRCA1/2 hereditary breast cancer families have a very heterogeneous genetic basis.

  9. Application of different spatial sampling patterns for sparse-array transducer design

    DEFF Research Database (Denmark)

    Nikolov, Svetoslav; Jensen, Jørgen Arendt

    2000-01-01

    , and then transfered to a 2D rectangulargrid. In this paper 5 different 2D array transducers have been considered and their performance was compared with respect to spatial and contrast resolution. An optimization of the element placement along the diagonals using vernier arrays is suggested. The simulation results...

  10. Modular design and implementation of field-programmable-gate-array-based Gaussian noise generator

    Science.gov (United States)

    Li, Yuan-Ping; Lee, Ta-Sung; Hwang, Jeng-Kuang

    2016-05-01

    The modular design of a Gaussian noise generator (GNG) based on field-programmable gate array (FPGA) technology was studied. A new range reduction architecture was included in a series of elementary function evaluation modules and was integrated into the GNG system. The approximation and quantisation errors for the square root module with a first polynomial approximation were high; therefore, we used the central limit theorem (CLT) to improve the noise quality. This resulted in an output rate of one sample per clock cycle. We subsequently applied Newton's method for the square root module, thus eliminating the need for the use of the CLT because applying the CLT resulted in an output rate of two samples per clock cycle (>200 million samples per second). Two statistical tests confirmed that our GNG is of high quality. Furthermore, the range reduction, which is used to solve a limited interval of the function approximation algorithms of the System Generator platform using Xilinx FPGAs, appeared to have a higher numerical accuracy, was operated at >350 MHz, and can be suitably applied for any function evaluation.

  11. Design of Arrayed-Waveguide Grating Routers for use as optical OFDM demultiplexers.

    Science.gov (United States)

    Lowery, Arthur James

    2010-06-21

    All-optical OFDM uses optical techniques to multiplex together several modulated lightsources, to form a band of subcarriers that can be considered as one wavelength channel. The subcarriers have a frequency separation equal to their modulation rate. This means that they can be demultiplexed without any cross-talk between them, usually with a Discrete Fourier Transform (DFT), implemented optically or electronically. Previous work has proposed networks of optical couplers to implement the DFT. This work shows that the topology of an Arrayed Grating Waveguide Router (AWGR) can be used to perform the demultiplexing, and that the AWGR can be considered as a serial-to-parallel converter followed by a DFT. The simulations show that the electrical bandwidths of the transmitter and receiver are critical to orthogonal demultiplexing, and give insight into how crosstalk occurs in all-optical OFDM and coherent-WDM systems using waveforms and spectra along the system. Design specifications for the AWGR are developed, and show that non-uniformity will lead to crosstalk. The compensation of dispersion and the applications of these techniques to 'coherent WDM' systems using Non-Return to Zero modulation is discussed.

  12. Exploring the potential of megaprimer PCR in conjunction with orthogonal array design for mutagenesis library construction.

    Science.gov (United States)

    Tang, Lixia; Zheng, Kai; Liu, Yu; Zheng, Huayu; Wang, Hu; Song, Chunlei; Zhou, Hong

    2013-01-01

    Although megaprimer PCR mutagenesis has been used routinely in protein directed evolution, users sometimes encounter technical hurdles, particularly inefficiency during amplification when large fragments are used or the template is difficult to be amplified. Instead of methodology development, here we simply overcome the limitation by optimizing megaprimer PCR conditions via orthogonal array design of the four PCR components in three levels of each: template, primer, Mg(2+) , and dNTPs. For this, only nine PCRs need to be performed. The strategy (termed as OptiMega) was not only successfully applied for the construction of one multiple-site saturation mutagenesis library of halohydrin dehalogenase HheC, which failed to be constructed previously using the standard QuikChange™ protocol, but also expanded the construction of two high-quality random mutagenesis libraries of HheA and HheC. Most importantly, OptiMega offers a quick and simple way of constructing random mutagenesis libraries by eliminating the ligation step. Our results demonstrated that the OptiMega strategy could greatly strengthen the potential of megaprimer PCR mutagenesis for library construction.

  13. Combined array-comparative genomic hybridization and single-nucleotide polymorphism-loss of heterozygosity analysis reveals complex genetic alterations in cervical cancer

    Directory of Open Access Journals (Sweden)

    Kenter Gemma G

    2007-02-01

    Full Text Available Abstract Background Cervical carcinoma develops as a result of multiple genetic alterations. Different studies investigated genomic alterations in cervical cancer mainly by means of metaphase comparative genomic hybridization (mCGH and microsatellite marker analysis for the detection of loss of heterozygosity (LOH. Currently, high throughput methods such as array comparative genomic hybridization (array CGH, single nucleotide polymorphism array (SNP array and gene expression arrays are available to study genome-wide alterations. Integration of these 3 platforms allows detection of genomic alterations at high resolution and investigation of an association between copy number changes and expression. Results Genome-wide copy number and genotype analysis of 10 cervical cancer cell lines by array CGH and SNP array showed highly complex large-scale alterations. A comparison between array CGH and SNP array revealed that the overall concordance in detection of the same areas with copy number alterations (CNA was above 90%. The use of SNP arrays demonstrated that about 75% of LOH events would not have been found by methods which screen for copy number changes, such as array CGH, since these were LOH events without CNA. Regions frequently targeted by CNA, as determined by array CGH, such as amplification of 5p and 20q, and loss of 8p were confirmed by fluorescent in situ hybridization (FISH. Genome-wide, we did not find a correlation between copy-number and gene expression. At chromosome arm 5p however, 22% of the genes were significantly upregulated in cell lines with amplifications as compared to cell lines without amplifications, as measured by gene expression arrays. For 3 genes, SKP2, ANKH and TRIO, expression differences were confirmed by quantitative real-time PCR (qRT-PCR. Conclusion This study showed that copy number data retrieved from either array CGH or SNP array are comparable and that the integration of genome-wide LOH, copy number and gene

  14. Bondwire array modeling for the design of hybrid high power amplifiers above C-band

    DEFF Research Database (Denmark)

    Hernández, Carlos Cilla; Jónasson, Sævar Þór; Hanberg, Jesper

    2012-01-01

    This paper presents a bondwire array model obtained using a software based on the finite elements method and validated up to 15 GHz by measurements over a purpose-build array structure. This work addresses the limits of the inductor-based bondwire model when used at frequencies above C-band to si......This paper presents a bondwire array model obtained using a software based on the finite elements method and validated up to 15 GHz by measurements over a purpose-build array structure. This work addresses the limits of the inductor-based bondwire model when used at frequencies above C...... comprising the array on the hybrid performance is discussed....

  15. Array comparative genomic hybridisation analysis of boys with X linked hypopituitarism identifies a 3.9 Mb duplicated critical region at Xq27 containing SOX3.

    NARCIS (Netherlands)

    Solomon, N.M.; Ross, S.; Morgan, T.; Belsky, J.L.; Hol, F.A.; Karnes, P.; Hopwood, N.J.; Myers, S.E.; Tan, A.; Warne, G.L.; Forrest, S.M.; Thomas, P.Q.

    2004-01-01

    INTRODUCTION: Array comparative genomic hybridisation (array CGH) is a powerful method that detects alteration of gene copy number with greater resolution and efficiency than traditional methods. However, its ability to detect disease causing duplications in constitutional genomic DNA has not been s

  16. A new DOI detector design using discrete crystal array with depth-dependent reflector patterns and single-ended readout

    Science.gov (United States)

    Lee, Seung-Jae; Lee, Chaeyeong; Kang, Jihoon; Chung, Yong Hyun

    2017-01-01

    We developed a depth of interaction (DOI) positron emission tomography (PET) detector using depth-dependent reflector patterns in a discrete crystal array. Due to the different reflector patterns at depth, light distribution was changed relative to depth. As a preliminary experiment, we measured DOI detector module crystal identification performance. The crystal consisted of a 9×9 array of 2 mmx2 mmx20 mm lutetium-yttrium oxyorthosilicate (LYSO) crystals. The crystal array was optically coupled to a 64-channel position-sensitive photomultiplier tube with a 2 mmx2 mm anode size and an 18.1 mmx18.1 mm effective area. We obtained the flood image with an Anger-type calculation. DOI layers and 9×9 pixels were well distinguished in the obtained images. Preclinical PET scanners based on this detector design offer the prospect of high and uniform spatial resolution.

  17. Design, testing, and economics of a 430 W sub p photovoltaic concentrator array for non grid-connected applications

    Science.gov (United States)

    Maish, A. B.; Rios, M., Jr.; Togami, H.

    A stand-alone 430 W/sub p/ photovoltaic (PV) concentrating system for low power, non grid-connected applications has been designed, fabricated, and tested at Sandia National Laboratories. The array consists of four passively cooled Fresnel lens concentrating modules on a newly developed polar axis tracking structure. Two axis tracking is provided using a self powered clock drive unit mounted on a single post foundation. Test results of tracking accuracy, array output power, parasitic power, performance in winds and array reliability are discussed. using a range of estimated production costs for small production volumes, the life-cycle energy costs have been calculated and compared to the equivalent energy costs of a 3 kW diesel electric generator set and of an equivalent flat panel PV system.

  18. Using a sensitivity study to facilitate the design of a multi-electrode array to measure six cardiac conductivity values.

    Science.gov (United States)

    Johnston, Barbara M

    2013-07-01

    When using the bidomain model to model the electrical activity of the heart, there are potentially six cardiac conductivity values involved: conductivity values in directions along and normal to the cardiac fibres with a sheet, as well as a conductivity value in the normal direction between the sheets, and these occur for both the extracellular and intracellular domains in the model. To date it has been common to assume that the two normal direction conductivity values are the same. However, recent work has demonstrated that six cardiac conductivity values, rather than four, are necessary for accurate modelling, which can then facilitate understanding of cardiovascular disease. To design a method to determine these conductivities, it is also necessary to design a suitable multi-electrode array, which can be used, in conjunction with an inversion technique, to retrieve conductivity values from measurements of potential made on the array. This work uses the results of a study, into the sensitivity of the measuring potentials to variability in the input conductivities, to facilitate the design of an array that could be used to retrieve six cardiac conductivity values, as well as fibre rotation angle. It is found that if an electrode in the array has a much lower value of potential than the other electrodes, then it tends to be much more sensitive to the input conductivities than the other electrodes. It also appears that inclusion of this type of electrode in the set of measuring electrodes is essential for accurately retrieving conductivity values. This technique is used to identify electrodes to be included in the array and using the final design it is demonstrated, using synthetic values of potential, that the six cardiac conductivity values, and the fibre rotation angle, can be retrieved very accurately.

  19. Optimal design of loudspeaker arrays for robust cross-talk cancellation using the Taguchi method and the genetic algorithm.

    Science.gov (United States)

    Bai, Mingsian R; Tung, Chih-Wei; Lee, Chih-Chung

    2005-05-01

    An optimal design technique of loudspeaker arrays for cross-talk cancellation with application in three-dimensional audio is presented. An array focusing scheme is presented on the basis of the inverse propagation that relates the transducers to a set of chosen control points. Tikhonov regularization is employed in designing the inverse cancellation filters. An extensive analysis is conducted to explore the cancellation performance and robustness issues. To best compromise the performance and robustness of the cross-talk cancellation system, optimal configurations are obtained with the aid of the Taguchi method and the genetic algorithm (GA). The proposed systems are further justified by physical as well as subjective experiments. The results reveal that large number of loudspeakers, closely spaced configuration, and optimal control point design all contribute to the robustness of cross-talk cancellation systems (CCS) against head misalignment.

  20. Designing 2D arrays for SHM of planar structures: a review

    Science.gov (United States)

    Stepinski, Tadeusz; Ambrozinski, Lukasz; Uhl, Tadeusz

    2013-04-01

    Monitoring structural integrity of large planar structures that aims at detecting and localizing impact or damage at any point of the structure requires normally a relatively dense network of uniformly distributed ultrasonic sensors. 2-D ultrasonic phased arrays, due to their beam-steering capability and all azimuth angle coverage are a very promising tool for structural health monitoring (SHM) of plate-like structures using Lamb waves (LW). Linear phased arrays that have been proposed for that purpose, produce mirrored image characterized by azimuth dependent resolution, which prevents unequivocal damage localization. 2D arrays do not have this drawback and they are even capable of mode selectivity when generating and receiving LWs. Performance of 2D arrays depends on their topology as well as the number of elements (transducers) used and their spacing in terms of wavelength. In this paper we propose a consistent methodology for three-step: theoretical, numerical and experimental investigation of a diversity of 2D array topologies in SHM applications. In the first step, the theoretical evaluation is performed using frequency-dependent structure transfer function (STF). STF that defines linear propagation of different LWs modes through the dispersive medium enables theoretical investigation of the particular array performance for a predefined tone-burst excitation signal. A dedicated software tool has been developed for the numerical evaluation of 2D array directional characteristics (beampattern) in a specific structure. The simulations are performed using local interaction simulation approach (LISA), implemented using NVIDIA CUDA graphical computation unit (GPU), which enables time-efficient 3D simulations of LWs propagation. Beampatterns of a 2D array can be to some extend evaluated analytically and using numerical simulations; in most cases, however, they require experimental verification. Using scanning laser vibrometer is proposed for that purpose, in a setup

  1. Compression and radiation of high-power short rf pulses. II. A novel antenna array design with combined compressor/radiator elements

    KAUST Repository

    Sirenko, Kostyantyn

    2011-01-01

    The paper discusses the radiation of compressed high power short RF pulses using two different types of antennas: (i) A simple monopole antenna and (ii) a novel array design, where each of the elements is constructed by combining a compressor and a radiator. The studies on the monopole antenna demonstrate the possibility of a high power short RF pulse\\'s efficient radiation even using simple antennas. The studies on the novel array design demonstrate that a reduced size array with lower pulse distortion and power decay can be constructed by assembling the array from elements each of which integrates a compressor and a radiator. This design idea can be used with any type of antenna array; in this work it is applied to a phased array.

  2. Solar Powered Aircraft, Photovoltaic Array/Battery System Tabletop Demonstration: Design and Operation Manual

    Science.gov (United States)

    Colozza, Anthony J.; Scheiman, David A.; Bailey, Sheila (Technical Monitor)

    2000-01-01

    A system was constructed to demonstrate the power system operation of a solar powered aircraft. The system consists of a photovoltaic (PV) array, a charge controller, a battery, an electric motor and propeller. The system collects energy from the PV array and either utilizes this energy to operate an electric motor or stores it in a rechargeable battery for future use. The system has a control panel which displays the output of the array and battery as well as the total current going to the electric motor. The control panel also has a means for adjusting the output to the motor to control its speed. The entire system is regulated around 12 VDC.

  3. Advanced design of conductive polymeric arrays with controlled electrical resistance using direct laser interference patterning

    Energy Technology Data Exchange (ETDEWEB)

    Lasagni, A.F. [Saarland University, Department of Materials Science, Chair of Functional Materials, Building C 6.3, 7. Stock, P.O. Box 15 11 50, Saarbruecken (Germany); George W. Woodruff School of Mechanical Engineering, Georgia Institute of Technology, Atlanta, GA (United States); Acevedo, D.F. [Saarland University, Department of Materials Science, Chair of Functional Materials, Building C 6.3, 7. Stock, P.O. Box 15 11 50, Saarbruecken (Germany); Universidad Nacional de Rio Cuarto, Departamento de Quimica, Cordoba (Argentina); Barbero, C.A. [Universidad Nacional de Rio Cuarto, Departamento de Quimica, Cordoba (Argentina); Muecklich, F. [Saarland University, Department of Materials Science, Chair of Functional Materials, Building C 6.3, 7. Stock, P.O. Box 15 11 50, Saarbruecken (Germany)

    2008-06-15

    In this work, we report a simple method for the fabrication of regular conducting polyaniline periodic arrays on large areas of glass or gold substrates using direct laser interference patterning. Additionally, by controlling the laser intensity it is possible to precisely tune the width of the periodic arrays and consequently the electrical resistance of the polyaniline strips. The periodic arrays were characterized using scanning electron microscopy, white light interferometry and cyclic voltametry. The great importance of the method reported lies both in its versatility and the ability to control the properties of the modified polymer electrodes with high precision. This is important for prospective applications such as electrochemical sensors. (orig.)

  4. Design of a Practical and Compact mm-Wave MIMO System with Optimized Capacity and Phased Arrays

    Directory of Open Access Journals (Sweden)

    Tommaso Cella

    2014-01-01

    Full Text Available In this paper we evaluate the feasibility of short range outdoor mm-wave MIMO links in the 70 GHz portion of the E-band (71–76 GHz. We use phased arrays in order to strongly reduce the impact of the multipath components, thus making the channel mainly line-of-sight (LOS. We design the array using a simple patch as a single element and simulate the performances for a 200 m link and a MIMO system with equal element spacing at the transmitter and the receiver. Each node of the MIMO system consists of a uniform rectangular array (URA where the single element is a patch antenna, in order to achieve higher gains and narrow beams. Such configuration is much more compact compared to the antennas currently employed for the same bandwidth. We optimize the interelement distances at the transmitter and the receiver and evaluate the capacity achievable with different array sizes. The results show that, for the proposed link budget, capacity up to 29 bit/s/Hz is achievable at a range of 200 m, with practical dimensions. We also show that the beamforming capabilities make the design much more flexible than the single reflector antenna systems. In the last part of the paper, we verify that our antenna can also operate in rainy conditions and longer ranges.

  5. Design a freeform microlens array module for any arbitrary-shape collimated beam shaping and color mixing

    Science.gov (United States)

    Chen, Enguo; Wu, Rengmao; Guo, Tailiang

    2014-06-01

    Collimated beam shaping with freeform surface usually employs a predefined mapping to tailor one or multiple freeform surfaces. Limitation on those designs is that the source, the freeform optics and the target are in fixed one-to-one correspondence with each other. To overcome this drawback, this paper presents a kind of freeform microlens array module integrated with an ultra-thin freeform microlens array and a condenser lens to reshape any arbitrary-shape collimated beam into a prescribed uniform rectangular illumination and achieve color mixing. The design theory is explicitly given, and some key issues are addressed. Several different application examples are given, and the target is obtained with high uniformity and energy efficiency. This freeform microlens array module, which shows better flexibility and practicality than the regular designs, can be used not only to reshape any arbitrary-shape collimated beam (or a collimated beam integrated with several sub-collimated beams), but also most importantly to achieve color mixing. With excellent optical performance and ultra-compact volume, this optical module together with the design theory can be further introduced into other applications and will have a huge market potential in the near future.

  6. Design a New Strategy Based on Nanoparticle-Enhanced Chemiluminescence Sensor Array for Biothiols Discrimination

    Science.gov (United States)

    Shahrajabian, Maryam; Hormozi-Nezhad, M. Reza

    2016-08-01

    Array-based sensor is an interesting approach that suggests an alternative to expensive analytical methods. In this work, we introduce a novel, simple, and sensitive nanoparticle-based chemiluminescence (CL) sensor array for discrimination of biothiols (e.g., cysteine, glutathione and glutathione disulfide). The proposed CL sensor array is based on the CL efficiencies of four types of enhanced nanoparticle-based CL systems. The intensity of CL was altered to varying degrees upon interaction with biothiols, producing unique CL response patterns. These distinct CL response patterns were collected as “fingerprints” and were then identified through chemometric methods, including linear discriminant analysis (LDA) and hierarchical cluster analysis (HCA). The developed array was able to successfully differentiate between cysteine, glutathione and glutathione disulfide in a wide concentration range. Moreover, it was applied to distinguish among the above analytes in human plasma.

  7. Theory, Design, and Measurement of Novel Uniform Circular Antenna Arrays for Direction of Arrival Estimation

    Science.gov (United States)

    2015-01-01

    the response of ideal dipoles in free-space are indicated by the dashed lines). . . . . . . . . . . 35 Figure 22: Dipole array simulated phase...differences relative to Antenna 1 (the response of ideal dipoles in free-space are indicated by the dashed lines...antenna elements themselves were assumed to be isotropic and V- shaped arrays were used). The Cramer- Rao Lower Bound (CRLB) is commonly used to

  8. Design and Fabrication of a Two-Dimensional Superconducting Pop-up Bolometer Array

    Science.gov (United States)

    Benford, Dominic J.; Staguhn, Johannes G.; Chervenak, James A.; Allen, Christine A.; Moseley, S. Harvey; Irwin, Kent D.; Stacey, Gordon J.; Page, Lyman A.

    2004-01-01

    We have been developing an architecture for producing large format, two dimensional arrays of close-packed bolometers, which will enable submillimeter cameras and spectrometers to obtain images and spectra orders of magnitude faster than present instruments. The low backgrounds achieved in these instruments require very sensitive detectors with NEPs of order 5 x 10(exp -18) W/square root of Hz. Superconducting transition edge sensor bolometers can be close-packed using the Pop-up Detector (PUD) format, and SQUID multiplexers operating at the detector base temperature can be intimately coupled to them. The array unit cell is 8 x 32 pixels, using 32- element detector and multiplexer components. We have fabricated an engineering model array with this technology which features a very compact, modular approach for large format arrays. We report on the production of the 32-element components for the arrays. Planned instruments using this array architecture include the Submillimeter and Far-InfraRed Experiment (SAFIRE) on the SOFIA airborne observatory, the South Pole Imaging Fabry-Perot Interferometer (SPIFI) for the AST/RO observatory, the Millimeter Bolometer Camera for the Atacama Cosmology Telescope (MBC/ACT), and the Redshift (Z) Early Universe Spectrometer (ZEUS j.

  9. Simplified design guide for estimating photovoltaic flat array and system performance

    Energy Technology Data Exchange (ETDEWEB)

    Evans, D.L.; Facinelli, W.A.; Koehler, L.P.

    1981-03-01

    Simplified, non-computer based methods are presented for predicting photovoltaic array and system performance. The array performance prediction methods are useful for calculating the potential output of passively cooled, flat, south facing max-power tracked arrays. A solar/weather data base for 97 different US and US affiliated stations is provided to aid in these calculations. Also, performance estimates can be made for photovoltaic systems (array, battery, power conditioner) that are backed-up by non-solar reserves capable of meeting the load when the solar system cannot. Such estimates can be made for a total of 41 different sinusoidal, unimodal, and bimodal diurnal load profiles from appropriate graphs included. These allow easy determination of the fraction of the load met by the solar photovoltaic system as a function of array size and (dedicated) battery storage capacity. These performance graphs may also be used for systems without battery storage. Use of array manufacturer's specification sheet data is discussed. Step-by-step procedures, along with suggested worksheets, are provided for carrying out the necessary calculations.

  10. Genomic imbalances in 5918 malignant epithelial tumors: an explorative meta-analysis of chromosomal CGH data

    Directory of Open Access Journals (Sweden)

    Baudis Michael

    2007-12-01

    Full Text Available Abstract Background Chromosomal abnormalities have been associated with most human malignancies, with gains and losses on some genomic regions associated with particular entities. Methods Of the 15429 cases collected for the Progenetix molecular-cytogenetic database, 5918 malignant epithelial neoplasias analyzed by chromosomal Comparative Genomic Hybridization (CGH were selected for further evaluation. For the 22 clinico-pathological entities with more than 50 cases, summary profiles for genomic imbalances were generated from case specific data and analyzed. Results With large variation in overall genomic instability, recurring genomic gains and losses were prominent. Most entities showed frequent gains involving 8q2, while gains on 20q, 1q, 3q, 5p, 7q and 17q were frequent in different entities. Loss "hot spots" included 3p, 4q, 13q, 17p and 18q among others. Related average imbalance patterns were found for clinically distinct entities, e.g. hepatocellular carcinomas (ca. and ductal breast ca., as well as for histologically related entities (squamous cell ca. of different sites. Conclusion Although considerable case-by-case variation of genomic profiles can be found by CGH in epithelial malignancies, a limited set of variously combined chromosomal imbalances may be typical for carcinogenesis. Focus on the respective regions should aid in target gene detection and pathway deduction.

  11. Design and prototype of radar sensor with Vivaldi linear array for through-wall radar imaging: an experimental study

    Science.gov (United States)

    Yılmaz, Betül; Özdemir, Caner

    2016-10-01

    We present a radar sensor that was designed to detect and image moving objects/targets on the other side of a wall. The radar sensor was composed of a linear array of Vivaldi antenna elements, an radio frequency (RF) switch, a microcontroller unit, and an RF transceiver. For the linear array, a total of eight antenna elements were used as sensors in synthetic aperture radar (SAR) configuration in the cross-range axis to improve the resolution in this dimension. Design steps of Vivaldi antenna elements and the entire linear array were presented. After the design, the prototyping procedure and the details of the radar sensor were given. Through-the-wall radar (TWR) imaging experiments were performed for stationary and moving targets using the assembled sensor. The resultant TWR images after these experiments were presented. During the image formation, a back-projection type image focusing algorithm was implemented and applied to increase the signal-to-noise ratio of the raw images. The constructed radar images demonstrated that our radar sensor could successfully detect and image both stationary and moving targets on the other side of the wall.

  12. Design Study of a Multi-channel Array Particle Spectrometer for Space Missions

    Science.gov (United States)

    Trindade, Andreia; Assis, P.; Brogueira, P.; Gonçalves, P.; Keating, A.; Pimenta, M.; Rodrigues, P.; Trindade, A.

    In this work, a novel particle spectrometer is proposed to fulfil the need to map the space radiation environment for future space missions and to provide more accurate scientific data. The concept of the instrument brings together new radiation-hard technologies, for the photo-sensors and scintillating materials that will improve the quality of the data, while taking into account the limited resources such as mass, power and accommodation, allocated for space radiation monitors. The Multi-channel Array Particle Spectrometer (MAPS), can measure fluxes and energy dis-tributions of protons, ions, electrons and gammas in a wide energy range based on the 3D reconstruction of the particle track through the detector and its deposited energy in the active volume. It consists on a 8 x 8 segmented scintillator block built from 3.2 x 3.2 x 20 mm3 indi-vidual LYSO:Ce rods that are readout at both ends by two 64 pixel Silicon Photo-Multipliers (SiPMs) matrices, a new generation of high gain (105-106) avalanche photodiodes working in controlled Geiger mode, that collect the scintillating light produced by the interactions of the charged particles in the crystals. Each SiPM matrix is readout by a 64 channel mixed sig-nal analog-digital ASIC, offering both particle identification and particle counting capabilities. Power cycling design of the ASIC allows to activate the particle identification block only during a pre-determined time slice, keeping the total power budget of less than 1 mW/channel. An on-board FPGA sorts the serialized data from the two ASICs and computes the trigger primitives in real-time and in an event-by-event basis. Whenever a charged particle crosses the segmented volume of the detector, the XY coordinates, given by the pixelized crystal positions, and the deposited energy in each crystal is recorded. The double readout scheme allows to compute the light collection asymmetry between both ends of the crystal and to use that information to record the

  13. Design, performance investigation and delivery of a miniaturized Cassegrainian concentrator solar array

    Science.gov (United States)

    Patterson, R. E.

    1985-01-01

    A miniaturized Cassegrainian concentrator (MCC) solar array concept is being developed with the objective of significantly reducing the recurring cost of multikilowatt solar arrays. The desired cost reduction is obtained as a result of using very small high efficiency solar cells in conjunction with low-cost optics. In the MCC single element concept and panel concept, incident solar radiation is reflected from a primary parabolic reflector to a secondary hyperbolic reflector and finally to a 4-millimetr diameter solar cell. A light catcher cone is used to improve off-axis performance. An element is approximately 13-millimeters thick which permits efficient launch stowage of the concentrator system panels without complex optical component deployments or retractions. The MCC elements are packed in bays within graphite epoxy frames and are electrically connected into appropriate series-parallel circuits. A MCC single element with a 21 sq cm entrance aperture and a 20 percent efficient, 0.25 sq cm gallium arsenide solar cell has the same power output as 30-sq cm of 11-percent efficiency (at 68 C) silicon solar cells. The MCC concept provides the potential for a significant reduction in array cost due to a 99 percent reduction in required cell area and a 30 percent reduction in array area relative to planar array of equivalent power.

  14. Design Low Crosstalk Ring-Slot Array Structure for Label-Free Multiplexed Sensing

    Directory of Open Access Journals (Sweden)

    Lijun Huang

    2014-08-01

    Full Text Available We theoretically demonstrate a low crosstalk ring-slot array structure used for label-free multiplexed sensing. The proposed sensors array is based on an array of three ring-slot and input/output line defect coupling waveguides. Each ring-slot cavity has slightly different cavity spacing and different resonant frequency. Results obtained using two dimensional finite-difference time-domain (2D-FDTD simulation indicate that the resonant frequencies of each sensor unit in response to the refractive index variations are independent. The refractive index sensitivity is 134 ~ 145.5 nm/RIU (refractive index unit and the Q factors more than 104 can be achieved. The calculated detect limit lower than 1.13 × 10−4 RIU is obtained. In addition, an extremely small crosstalk lower than −25.8 dB is achieved among the array of three ring-slot cavities. The results demonstrate that this multiplexed sensor array is a promising platform for integrated optical devices and enables highly parallel label-free detection.

  15. Designing Adaptive Linear Array Antenna to Achieve Pattern Steering Optimization by Phase-Amplitude Perturbations Using Genetic Algorithms

    Institute of Scientific and Technical Information of China (English)

    HSUChaohsing; CHENTsongyi; PanJengshyang

    2005-01-01

    In this paper, a phase-amplitude perturbation method of an adaptive array factor based on the genetic algorithm is proposed. The design for an optimal beam pattern of an adaptive antenna is able to not only suppress interference by placing nulls at the directions of the interfering sources but also provide a maximized main lobe in the direction of the desired signal, i.e., to maximizethe Signal interference ratio (SIR). In order to achieve this goal, a kind of new convergent skill called the two-way convergent method for genetic algorithms is proposed. The phase-amplitude perturbation method is applied to realize the optimal beam pattern of an adaptively linear array antenna. The Genetic algorithms are applied to find the optimal phase-amplitude weighting vector of adaptive array factor. An optimal beam pattern of linear array is derived by phase-amplitude perturbations using a genetic algorithm. Computer simulation result is given to demonstrate the effectiveness of the proposed method.

  16. HDL Design for 1 Zetta Bits Per Second (1 Zbps Multichannel 64:1 LVDS Data Serializer & De-Serializer ASIC Array Card Design for 6th Sense and Future Ultra High Wireless and Mobile Communication Protocol Cards

    Directory of Open Access Journals (Sweden)

    P. N. V. M SASTRY

    2015-01-01

    Full Text Available The Aim is to HDL Design & Implementation for Exa Bit Rate Multichannel 64:1 LVDS Data Serializer & De-Serializer ASIC Array Card for Ultra High Speed Wireless Communication Products like Network On Chip Routers, Data Bus Communication Interface Applications, Cloud Computing Networks , Zetta bit Ethernet at Zetta Bit Rate Of Data Transfer Speed. Basically This Serializer Array Converts 64 bit parallel Data Array in to Serial Array Form on Transmitter Side and Transmission Done through High Speed Wireless Serial Communication Link and also Converts this Same Serial Array Data into Parallel Data Array on the Receiver Side by De-Serializer Array ASIC without any noise, also measure Very High Compressed Jitter Tolerance & Eye Diagram, Bit Error Rate through Analyzer. This LVDS Data SER-De-SER mainly used in High Speed Bus Communication Protocol Transceivers, Interface FPGA Add On Cards. The Process Of Design is Implemented through Verilog HDL / VHDL, Programming & Debugging Done Latest FPGA Board.

  17. Analysis of VCSEL Array Module Using a Simple Microlens Array

    Institute of Scientific and Technical Information of China (English)

    Hen-Wai; Tsao; Shyh-Lin; Tsao

    2003-01-01

    A simple microlens array is designed between VCSEL array and fiber array for integration of array module. We increase the optical coupling efficiency from -32.057 dBm to -0.9054 dBm by using our designed microlens array.

  18. Analysis of VCSEL Array Module Using a Simple Microlens Array

    Institute of Scientific and Technical Information of China (English)

    Wen-Ming Cheng; Hen-Wai Tsao; Shyh-Lin Tsao

    2003-01-01

    A simple microlens array is designed between VCSEL array and fiber array for integration of array module. We increase the optical coupling efficiency from-32.057 dBm to-0.9054 dBm by using our designed microlens array.

  19. [Design and field calculation of coil array for transcranial magnetic stimulation (TMS) based on genetic algorithm].

    Science.gov (United States)

    Liu, Jicheng; Huang, Kama; Guo, Lanting; Zhang, Hong; Hu, Yayi

    2005-04-01

    It is the intent of this paper to locate the activation point in Transcranial Magnetic Stimulation (TMS) efficiently. The schemes of coil array in torus shape is presented to get the electromagnetic field distribution with ideal focusing capability. Then an improved adaptive genetic algorithm (AGA) is applied to the optimization of both value and phase of the current infused in each coil. Based on the calculated results of the optimized current configurations, ideal focusing capability is drawn as contour lines and 3-D mesh charts of magnitude of both magnetic and electric field within the calculation area. It is shown that the coil array has good capability to establish focused shape of electromagnetic distribution. In addition, it is also demonstrated that the coil array has the capability to focus on two or more targets simultaneously.

  20. Elimination of mutual inductance in NMR phased arrays: the paddle design revisited.

    Science.gov (United States)

    Constantinides, Christakis; Angeli, Stelios

    2012-09-01

    This study proposes a method to empirically minimize mutual inductance, using passive end-ring circular paddles, with neighboring coil loops placed in a non-overlapped configuration. The proposed concepts are validated through B(1)-field simulations for resonant coils at f(o)=300.5 MHz, having various sizes (3-10 cm), and for paddles with sizes ranging from 16 to 30 mm, and bench tests on constructed 4×4cm(2) two- (1×2) and four-coil loop (2×2) planar arrays. Simulation results yield total mean percentage B(1)-field differences of only 7.03% between the two non-overlapping coil array configurations (paddles vs. no-paddles). Pair-wise comparisons of elicited mean B(1)-field differences from the use of different circular and rectangular paddle sizes, yield values paddles having a radius of approximately 28% the coil's largest dimension. In the absence of paddles, differences in the split of resonance peaks of 9.9 MHz were observed for the two coils in the 1×2 array, which vanished with paddle placement. Single coil responses (unloaded/loaded) without paddles, and responses from array coils with use of optimally-sized paddles yielded quality factor ratios that ranged between 1.1-1.86 and 1.0-1.5, respectively. Phantom and mouse loaded reflection coefficients S(11)/S(22) were -16.7/-16.2dB and -28.2/-16.1 dB, for the two array loops, respectively. Under unloaded conditions and in the absence of paddles, split resonances were observed for the 1×2 array, yielding transmission coefficients of -5.5 to -8.1 dB, reversing to single resonance responses upon paddle placements, with transmission coefficients of -14.4 to -15.6 dB.

  1. Efficient design, accurate fabrication and effective characterization of plasmonic quasicrystalline arrays of nano-spherical particles

    Science.gov (United States)

    Namin, Farhad A.; Yuwen, Yu A.; Liu, Liu; Panaretos, Anastasios H.; Werner, Douglas H.; Mayer, Theresa S.

    2016-02-01

    In this paper, the scattering properties of two-dimensional quasicrystalline plasmonic lattices are investigated. We combine a newly developed synthesis technique, which allows for accurate fabrication of spherical nanoparticles, with a recently published variation of generalized multiparticle Mie theory to develop the first quantitative model for plasmonic nano-spherical arrays based on quasicrystalline morphologies. In particular, we study the scattering properties of Penrose and Ammann- Beenker gold spherical nanoparticle array lattices. We demonstrate that by using quasicrystalline lattices, one can obtain multi-band or broadband plasmonic resonances which are not possible in periodic structures. Unlike previously published works, our technique provides quantitative results which show excellent agreement with experimental measurements.

  2. End-Fire Phased Array 5G Antenna Design Using Leaf-Shaped Bow-Tie Elements for 28/38 GHz MIMO Applications

    DEFF Research Database (Denmark)

    Ojaroudiparchin, Naser; Shen, Ming; Pedersen, Gert F.

    2016-01-01

    In this paper, a new design of mm-Wave phased array 5G antenna for multiple-input multiple-output (MIMO) applications has been introduced. Two identical linear phased arrays with eight leaf-shaped bow-tie antenna elements have been used at different sides of the mobile-phone PCB. An Arlon AR 350...

  3. Design of photonic phased array switches using nano electromechanical systems on silicon-on-insulator integration platform

    Science.gov (United States)

    Hussein, Ali Abdulsattar

    This thesis presents an introduction to the design and simulation of a novel class of integrated photonic phased array switch elements. The main objective is to use nano-electromechanical (NEMS) based phase shifters of cascaded under-etched slot nanowires that are compact in size and require a small amount of power to operate them. The structure of the switch elements is organized such that it brings the phase shifting elements to the exterior sides of the photonic circuits. The transition slot couplers, used to interconnect the phase shifters, are designed to enable biasing one of the silicon beams of each phase shifter from an electrode located at the side of the phase shifter. The other silicon beam of each phase shifter is biased through the rest of the silicon structure of the switch element, which is taken as a ground. Phased array switch elements ranging from 2x2 up to 8x8 multiple-inputs/multiple-outputs (MIMO) are conveniently designed within reasonable footprints native to the current fabrication technologies. Chapter one presents the general layout of the various designs of the switch elements and demonstrates their novel features. This demonstration will show how waveguide disturbances in the interconnecting network from conventional switch elements can be avoided by adopting an innovative design. Some possible applications for the designed switch elements of different sizes and topologies are indicated throughout the chapter. Chapter two presents the design of the multimode interference (MMI) couplers used in the switch elements as splitters, combiners and waveguide crossovers. Simulation data and design methodologies for the multimode couplers of interest are detailed in this chapter. Chapter three presents the design and analysis of the NEMS-operated phase shifters. Both simulations and numerical analysis are utilized in the design of a 0°-180° capable NEMS-operated phase shifter. Additionally, the response of some of the designed photonic phased

  4. Design and Development of Broadband Inverted E-shaped Patch Microstrip Array Antenna For 3G Wireless Network

    Directory of Open Access Journals (Sweden)

    Norbahiah Misran

    2008-01-01

    Full Text Available Microstrip patch antenna has been received tremendous attention since the last two decades and now it becomes a major component in the development of Smart Antenna System for Third-Generation Wireless Network proposed by the ITU-R under the banner of IMT-2000. Smart antenna consists of an array of antennas associated with it a base-band hardware and control unit (inclusive of the software algorithm that have the capability to change its radiation pattern according to the direction of the user. This paper describes the design and development of broadband Inverted E-shaped patch microstrip array antennas for 3G wireless network. The antenna was designed for the IMT-2000 operating frequency range of 1.885–2.200GHz and was built as an array of 4x4 inverted E-shaped patches. The beamforming feed network comprises of commercial variable attenuators (KAT1D04SA002, variable phase shifters (KPH35OSC000, and the corporate 16-ways Wilkinson power divider which was developed in-house. The antenna successfully achieves the bandwidth of 16.14% (at VSWR: 1.5 with respect to the center frequency of 2.045 GHz. The antenna is capable of scanning with the maximum scanning angle of ±30º and ±25º in azimuth and elevation respectively.

  5. Software design for the control system for Small-Size Telescopes with single-mirror of the Cherenkov Telescope Array

    CERN Document Server

    :,; Błocki, J; Bogacz, L; Borkowski, J; Bulik, T; Cadoux, F; Christov, A; Curyło, M; della Volpe, D; Dyrda, M; Favre, Y; Frankowski, A; Grudnik, Ł; Grudzińska, M; Heller, M; Idźkowski, B; Jamrozy, M; Janiak, M; Kasperek, J; Lalik, K; Lyard, E; Mach, E; Mandat, D; Marszałek, A; Michałowski, J; Moderski, R; Rameez, M; Montaruli, T; Neronov, A; Niemiec, J; Ostrowski, M; Paśko, P; Pech, M; Porcelli, A; Prandini, E; Rajda, P; Schioppa, E jr; Schovanek, P; Seweryn, K; Skowron, K; Sliusar, V; Sowiński, M; Stawarz, Ł; Stodulska, M; Stodulski, M; Pujadas, I Troyano; Toscano, S; Walter, R; Wiȩcek, M; Zagdański, A; Ziȩtara, K; Zychowski, P

    2015-01-01

    The Small-Size Telescope with single-mirror (SST-1M) is a 4 m Davies-Cotton telescope and is among the proposed telescope designs for the Cherenkov Telescope Array (CTA). It is conceived to provide the high-energy ($>$ few TeV) coverage. The SST-1M contains proven technology for the telescope structure and innovative electronics and photosensors for the camera. Its design is meant to be simple, low-budget and easy-to-build industrially. Each device subsystem of an SST-1M telescope is made visible to CTA through a dedicated industrial standard server. The software is being developed in collaboration with the CTA Medium-Size Telescopes to ensure compatibility and uniformity of the array control. Early operations of the SST-1M prototype will be performed with a subset of the CTA central array control system based on the Alma Common Software (ACS). The triggered event data are time stamped, formatted and finally transmitted to the CTA data acquisition. The software system developed to control the devices of an SS...

  6. Hybrid Differential Evolution with Biogeography-Based Optimization for Design of a Reconfigurable Antenna Array with Discrete Phase Shifters

    Directory of Open Access Journals (Sweden)

    Xiangtao Li

    2011-01-01

    Full Text Available Multibeam antenna arrays have important applications in communications and radar. This paper presents a new method of designing a reconfigurable antenna with quantized phase excitations using a new hybrid algorithm, called DE/BBO. The reconfigurable design problem is to find the element excitation that will result in a sector pattern main beam with low sidelobes with additional requirement that the same excitation amplitudes applied to the array with zero-phase should be in a high directivity, low sidelobe pencil-shaped main beam. In order to reduce the effect of mutual coupling between the antenna-array elements, the dynamic range ratio is minimized. Additionally, compared with the continuous realization and subsequent quantization, experimental results indicate that the performance of the discrete realization of the phase excitation value can be improved. In order to test the performances of hybrid differential evolution with biogeography-based optimization, the results of some state-of-art algorithms are considered, for the purposed of comparison. Experiment results indicate the better performance of the DE/BBO.

  7. Thermal design issues and performance of microcalorimeter arrays at sub-Kelvin temperatures

    NARCIS (Netherlands)

    Ridder, M.L.; Bruijn, M.P.; Hoevers, H.F.C.; Germeau, A.; Baars, N.H.R.; Krouwer, E.; Baar, van J.J.J.; Wiegerink, R.J.

    2003-01-01

    We have produced 5/spl times/5 pixel arrays of microcalorimeters using bulk micromachining. Analysis of our data provides the thermal conductivity parameters of Si/sub x/N/sub y/ 1 /spl mu/m thick membranes at 100 mK. Moreover we find that the thermal transport at 100 mK in Si beams, with dimensions

  8. A Field Programmable Gate Array Based Software Defined Radio Design for the Space Environment

    Science.gov (United States)

    2009-12-01

    Signal Analysis, Software Defined Radio (SDR), System Generator , Fast Fourier Transform (FFT), Field Programmable Gate Array (FPGA), Xilinx, Virtex...5 B. COMPUTING TOOLS ...................................................................................7 1. System Generator .................................................................................7... System Generator Configuration Options [After 16]........................18 Figure 8. FFTv1.0, Triple memory configuration [From 22

  9. Design of a Novel Experimental Facility for Testing of Tidal Arrays

    Directory of Open Access Journals (Sweden)

    Matevz Pintar

    2013-08-01

    Full Text Available In order to obtain the maximum amount of energy from tidal stream extraction devices, deployment in large arrays should be studied. The area of seabed with favorable conditions is fairly limited; therefore layout spacing has to be optimized. In this paper a feasibility study for a novel experimental facility, suitable for the testing of an array of tidal devices, is presented. To avoid space and scale limitations of towing tanks, testing is proposed to be performed in large lakes or calm seas using a self-propelled vessel, which will carry an array of devices with variable spacing, creating relevant speed differences and measuring their performance and loading. Using hydrodynamic scaling laws, an appropriate size for test turbines and the range of vessel speed was determined to fulfill experimental requirements. Computational fluid dynamic simulations, using the actuator disc method, have suggested a suitable turbine array configuration to resemble real application conditions. A simplified model of the vessel was analyzed using the finite elements method to determine the main scantlings. The hull resistance calculated by empirical formulae was found to be negligible compared to the resistance of the tested turbine. It was confirmed that turbine size and speed determined by scaling laws are also reasonable from a propulsion point of view.

  10. Conceptual design of the early implementation of the NEutron Detector Array (NEDA) with AGATA

    Energy Technology Data Exchange (ETDEWEB)

    Hueyuek, Tayfun; Gadea, Andres; Domingo-Pardo, Cesar [Universidad de Valencia, Instituto de Fisica Corpuscular, CSIC, Paterna (Valencia) (Spain); Di Nitto, Antonio [Istituto Nazionale di Fisica Nucleare, Napoli (Italy); Johannes Gutenberg-Universitaet Mainz, Mainz (Germany); Jaworski, Grzegorz; Javier Valiente-Dobon, Jose; De Angelis, Giacomo; Modamio, Victor; Triossi, Andrea [Laboratori Nazionali di Legnaro, Istituto Nazionale di Fisica Nucleare, Legnaro (Italy); Nyberg, Johan [Uppsala University, Department of Physics and Astronomy, Uppsala (Sweden); Palacz, Marcin [University of Warsaw, Heavy Ion Laboratory, Warsaw (Poland); Soederstroem, Paer-Anders [RIKEN Nishina Center, Saitama (Japan); Aliaga-Varea, Ramon Jose [Universidad de Valencia, Instituto de Fisica Corpuscular, CSIC, Paterna (Valencia) (Spain); Universidad Politecnica de Valencia, I3M, Valencia (Spain); Atac, Ayse [Ankara University, Department of Physics, Faculty of Sciences, Ankara (Turkey); The Royal Institute of Technology, Stockholm (Sweden); Collado, Javier; Egea, Francisco Javier; Gonzalez, Vicente; Sanchis, Enrique [University of Valencia, Department of Electronic Engineering, Burjassot (Valencia) (Spain); Erduran, Nizamettin [Istanbul Sabahattin Zaim University, Faculty of Engineering and Natural Sciences, Istanbul (Turkey); Ertuerk, Sefa [University of Nigde, Department of Physics, Faculty of Science and Arts, Nigde (Turkey); France, Gilles de [CNRS/IN2P3, GANIL, CEA/DSAM, Caen (France); Gadea, Rafael; Herrero-Bosch, Vicente [Universidad Politecnica de Valencia, I3M, Valencia (Spain); Kaskas, Ayse [Ankara University, Department of Physics, Faculty of Sciences, Ankara (Turkey); Moszynski, Marek [National Centre for Nuclear Research, Otwock-Swierk (Poland); Wadsworth, Robert [University of York, Department of Physics, York (United Kingdom)

    2016-03-15

    The NEutron Detector Array (NEDA) project aims at the construction of a new high-efficiency compact neutron detector array to be coupled with large γ -ray arrays such as AGATA. The application of NEDA ranges from its use as selective neutron multiplicity filter for fusion-evaporation reaction to a large solid angle neutron tagging device. In the present work, possible configurations for the NEDA coupled with the Neutron Wall for the early implementation with AGATA has been simulated, using Monte Carlo techniques, in order to evaluate their performance figures. The goal of this early NEDA implementation is to improve, with respect to previous instruments, efficiency and capability to select multiplicity for fusion-evaporation reaction channels in which 1, 2 or 3 neutrons are emitted. Each NEDA detector unit has the shape of a regular hexagonal prism with a volume of about 3.23l and it is filled with the EJ301 liquid scintillator, that presents good neutron- γ discrimination properties. The simulations have been performed using a fusion-evaporation event generator that has been validated with a set of experimental data obtained in the {sup 58}Ni + {sup 56}Fe reaction measured with the Neutron Wall detector array. (orig.)

  11. Conceptual design of the early implementation of the NEutron Detector Array (NEDA) with AGATA

    Science.gov (United States)

    Hüyük, Tayfun; Di Nitto, Antonio; Jaworski, Grzegorz; Gadea, Andrés; Javier Valiente-Dobón, José; Nyberg, Johan; Palacz, Marcin; Söderström, Pär-Anders; Jose Aliaga-Varea, Ramon; de Angelis, Giacomo; Ataç, Ayşe; Collado, Javier; Domingo-Pardo, Cesar; Egea, Francisco Javier; Erduran, Nizamettin; Ertürk, Sefa; de France, Gilles; Gadea, Rafael; González, Vicente; Herrero-Bosch, Vicente; Kaşkaş, Ayşe; Modamio, Victor; Moszynski, Marek; Sanchis, Enrique; Triossi, Andrea; Wadsworth, Robert

    2016-03-01

    The NEutron Detector Array (NEDA) project aims at the construction of a new high-efficiency compact neutron detector array to be coupled with large γ-ray arrays such as AGATA. The application of NEDA ranges from its use as selective neutron multiplicity filter for fusion-evaporation reaction to a large solid angle neutron tagging device. In the present work, possible configurations for the NEDA coupled with the Neutron Wall for the early implementation with AGATA has been simulated, using Monte Carlo techniques, in order to evaluate their performance figures. The goal of this early NEDA implementation is to improve, with respect to previous instruments, efficiency and capability to select multiplicity for fusion-evaporation reaction channels in which 1, 2 or 3 neutrons are emitted. Each NEDA detector unit has the shape of a regular hexagonal prism with a volume of about 3.23l and it is filled with the EJ301 liquid scintillator, that presents good neutron- γ discrimination properties. The simulations have been performed using a fusion-evaporation event generator that has been validated with a set of experimental data obtained in the 58Ni + 56Fe reaction measured with the Neutron Wall detector array.

  12. First IDA Submittal for Transducer Element Design for Loosely Packed Planar Array Common Problem 1.1

    Science.gov (United States)

    1966-05-11

    FIRST IDA SUBMITTAL FOR TRANSDUCER ELEMENT DESIGN FOR LOOSELY PACKED PLANAR ARRAY CID COMMON PROBLEM 1. 1 Submitted to Conformal/Planar Array Project...R4JEN2’ TRACOR, INC. MID BAND 6..I ~JUUliL-UnLU i C.P. 1 5 INCH CIRCULRR HERD MIO BRINO LPz.3777 QP=E +iD L1oooo -i00 F -WFC 4q(TI’ ERT R-EC c-AE O ALPPE...8217 LcO [a x I. Cr l Z2) D zS x) q." L)I I Iu T~ xj Co4 C3= 1-L Z (nw x V O vV 5% C3 CD .* * -3x U l 1C .) uw wU -A CID .4 i I--I- U- 49 (1’)W uri J m LAJ 0

  13. Enhanced durability of designated polarization of PbTiO3 nanodot arrays investigated by piezoresponse force microscopy

    Science.gov (United States)

    Kim, Jiyoon; Park, Kwang-Won; Hong, Jongin; No, Kwangsoo

    2015-04-01

    We used piezoresponse force microscopy (PFM) to investigate local domain relaxation behavior of overhanging PbTiO3 (PTO) nanodot arrays on platinized silicon substrates, which were prepared by using PbO vapor phase reaction sputtering on micellar monolayer films of polystyrene-block-poly(ethylene oxide) (PS-b-PEO) loaded with TiO2 sol-gel precursor. The overhanging PTO nanodot arrays (92% at a temperature of 100 °C for 365 min) showed better ferroelectric retention than the PTO thin films (80% at the same condition). The enhanced polarization states and the absence of depolarization field due to homogeneous electric field inside the overhanging nanodot allowed for the remarkable durability of designated ferroelectric polarization.

  14. Design of a microchannel-nanochannel-microchannel array based nanoelectroporation system for precise gene transfection.

    Science.gov (United States)

    Gao, Keliang; Li, Lei; He, Lingna; Hinkle, Kevin; Wu, Yun; Ma, Junyu; Chang, Lingqian; Zhao, Xi; Perez, Daniel Gallego; Eckardt, Sigrid; McLaughlin, John; Liu, Boyu; Farson, Dave F; Lee, L James

    2014-03-12

    A micro/nano-fabrication process of a nanochannel electroporation (NEP) array and its application for precise delivery of plasmid for non-viral gene transfection is described. A dip-combing device is optimized to produce DNA nanowires across a microridge array patterned on the polydimethylsiloxane (PDMS) surface with a yield up to 95%. Molecular imprinting based on a low viscosity resin, 1,4-butanediol diacrylate (1,4-BDDA), adopted to convert the microridge-nanowire-microridge array into a microchannel-nanochannel-microchannel (MNM) array. Secondary machining by femtosecond laser ablation is applied to shorten one side of microchannels from 3000 to 50 μm to facilitate cell loading and unloading. The biochip is then sealed in a packaging case with reservoirs and microfluidic channels to enable cell and plasmid loading, and to protect the biochip from leakage and contamination. The package case can be opened for cell unloading after NEP to allow for the follow-up cell culture and analysis. These NEP cases can be placed in a spinning disc and up to ten discs can be piled together for spinning. The resulting centrifugal force can simultaneously manipulate hundreds or thousands of cells into microchannels of NEP arrays within 3 minutes. To demonstrate its application, a 13 kbp OSKM plasmid of induced pluripotent stem cell (iPSC) is injected into mouse embryonic fibroblasts cells (MEFCs). Fluorescence detection of transfected cells within the NEP biochips shows that the delivered dosage is high and much more uniform compared with similar gene transfection carried out by the conventional bulk electroporation (BEP) method.

  15. 1-Mb resolution array-based comparative genomic hybridization using a BAC clone set optimized for cancer gene analysis

    NARCIS (Netherlands)

    Greshock, J; Naylor, TL; Margolin, A; Diskin, S; Cleaver, SH; Futreal, PA; deJong, PJ; Zhao, SY; Liebman, M; Weber, BL

    2004-01-01

    Array-based comparative genomic hybridization (aCGH) is a recently developed tool for genome-wide determination of DNA copy number alterations. This technology has tremendous potential for disease-gene discovery in cancer and developmental disorders as well as numerous other applications. However, w

  16. 毫米波微带天线阵列设计%Design of a millimeter wave microstrip antenna array

    Institute of Scientific and Technical Information of China (English)

    于慧娟

    2016-01-01

    A circular aperture millimeter wave series and parallel fed microstrip antenna array was proposed. The antenna was designed with rectangular microstrip patch which was fed by slot-coupled to increase the bandwidth. A series-fed microstrip antenna array was selected in order to use the antenna aperture area effectively and decrease the net complexity. At the same time, according to design of the circular aperture millimeter wave micro-strip antenna array, the part array was series and parallel fed to increase the bandwidth of the microstrip antenna. Results show that the bandwidth of the antenna is about 5%. The simulation result of the antenna’s gain is better than 30.6 dBi in working band. The beam width is about 4.0°×3.5° and the side lobe level is lower than –13 dB. Multi beam and phased array functions can be realized with the antenna array and the net.%设计了一个圆口径串并联混合馈电的毫米波微带天线阵列。该天线采用矩形微带工字型缝隙贴片耦合馈电的方法展宽带宽。为了有效利用天线口径面积,减小网络复杂度,选取串联微带天线阵列形式。同时为了展宽带宽,根据设计的圆形口径阵列,将部分子阵采用串并联混合馈电的形式,得到带宽为5%的毫米波微带天线阵列。仿真表明,该天线在工作频带内增益大于30.6 dBi,波束宽度为4.0°×3.5°,副瓣电平低于–13 dB。该天线阵面与网络配合,可以实现多波束或相控阵的功能。

  17. Rapid detection of genomic imbalances using micro-arrays consisting of pooled BACs covering all human chromosome arms.

    Science.gov (United States)

    Knijnenburg, Jeroen; van der Burg, Marja; Nilsson, Philomeen; Ploos van Amstel, Hans Kristian; Tanke, Hans; Szuhai, Károly

    2005-10-12

    A strategy is presented to select, pool and spot human BAC clones on an array in such a way that each spot contains five well performing BAC clones, covering one chromosome arm. A mini-array of 240 spots was prepared representing all human chromosome arms in a 5-fold as well as some controls, and used for comparative genomic hybridization (CGH) of 10 cell lines with aneusomies frequently found in clinical cytogenetics and oncology. Spot-to-spot variation within five replicates was below 6% and all expected abnormalities were detected 100% correctly. Sensitivity was such that replacing one BAC clone in a given spot of five by a BAC clone from another chromosome, thus resulting in a change in ratio of 20%, was reproducibly detected. Incubation time of the mini-array was varied and the fluorescently labelled target DNA was diluted. Typically, aneusomies could be detected using 30 ng of non-amplified random primed labelled DNA amounts in a 4 h hybridization reaction. Potential application of these mini-arrays for genomic profiling of disseminated tumour cells or of blastomeres for preimplantation genetic diagnosis, using specially designed DNA amplification methods, are discussed.

  18. Design, development and evaluation of a resistor-based multiplexing circuit for a 20×20 SiPM array

    Science.gov (United States)

    Wang, Zhonghai; Sun, Xishan; Lou, Kai; Meier, Joseph; Zhou, Rong; Yang, Chaowen; Zhu, Xiaorong; Shao, Yiping

    2016-04-01

    One technical challenge in developing a large-size scintillator detector with multiple Silicon Photomultiplier (SiPM) arrays is to read out a large number of detector output channels. To achieve this, different signal multiplexing circuits have been studied and applied with different performances and cost-effective tradeoffs. Resistor-based multiplexing circuits exhibit simplicity and signal integrity, but also present the disadvantage of timing shift among different channels. In this study, a resistor-based multiplexing circuit for a large-sized SiPM array readout was developed and evaluated by simulation and experimental studies. Similarly to a multiplexing circuit used for multi-anode PMT, grounding and branching resistors were connected to each SiPM output channel. The grounding resistor was used to simultaneously reduce the signal crosstalk among different channels and to improve timing performance. Both grounding and branching resistor values were optimized to maintain a balanced performance of the event energy, timing, and positioning. A multiplexing circuit was implemented on a compact PCB and applied for a flat-panel detector which consisted of a 32×32 LYSO scintillator crystals optically coupled to 5×5 SiPM arrays for a total 20×20 output channels. Test results showed excellent crystal identification for all 1024 LYSO crystals (each with 2×2×30 mm3 size) with 22Na flood-source irradiation. The measured peak-to-valley ratio from typical crystal map profile is around 3:1 to 6.6:1, an average single crystal energy resolution of about 17.3%, and an average single crystal timing resolution of about 2 ns. Timing shift among different crystals, as reported in some other resistor-based multiplexing circuit designs, was not observed. In summary, we have designed and implemented a practical resistor-based multiplexing circuit that can be readily applied for reading out a large SiPM array with good detector performance.

  19. Design, development and evaluation of a resistor-based multiplexing circuit for a 20×20 SiPM array

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Zhonghai [College of Physical Science and Technology, Key Laboratory of Radiation Physics and Technology, Ministry of Education, Sichuan University, Chengdu (China); Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, Tx (United States); Sun, Xishan [Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, Tx (United States); Lou, Kai [Department of Electrical and Computer Engineering, Rice University, Houston, Tx (United States); Meier, Joseph [Department of Imaging Physics, The University of Texas MD Anderson Cancer Center, Houston, Tx (United States); Zhou, Rong; Yang, Chaowen [College of Physical Science and Technology, Key Laboratory of Radiation Physics and Technology, Ministry of Education, Sichuan University, Chengdu (China); Zhu, Xiaorong [Department of Radiation Physics, The University of Texas MD Anderson Cancer Center, Houston, Tx (United States); Shao, Yiping [Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, Tx (United States)

    2016-04-21

    One technical challenge in developing a large-size scintillator detector with multiple Silicon Photomultiplier (SiPM) arrays is to read out a large number of detector output channels. To achieve this, different signal multiplexing circuits have been studied and applied with different performances and cost-effective tradeoffs. Resistor-based multiplexing circuits exhibit simplicity and signal integrity, but also present the disadvantage of timing shift among different channels. In this study, a resistor-based multiplexing circuit for a large-sized SiPM array readout was developed and evaluated by simulation and experimental studies. Similarly to a multiplexing circuit used for multi-anode PMT, grounding and branching resistors were connected to each SiPM output channel. The grounding resistor was used to simultaneously reduce the signal crosstalk among different channels and to improve timing performance. Both grounding and branching resistor values were optimized to maintain a balanced performance of the event energy, timing, and positioning. A multiplexing circuit was implemented on a compact PCB and applied for a flat-panel detector which consisted of a 32×32 LYSO scintillator crystals optically coupled to 5×5 SiPM arrays for a total 20×20 output channels. Test results showed excellent crystal identification for all 1024 LYSO crystals (each with 2×2×30 mm{sup 3} size) with {sup 22}Na flood-source irradiation. The measured peak-to-valley ratio from typical crystal map profile is around 3:1 to 6.6:1, an average single crystal energy resolution of about 17.3%, and an average single crystal timing resolution of about 2 ns. Timing shift among different crystals, as reported in some other resistor-based multiplexing circuit designs, was not observed. In summary, we have designed and implemented a practical resistor-based multiplexing circuit that can be readily applied for reading out a large SiPM array with good detector performance.

  20. 基于微阵列芯片的比较基因组杂交技术在临床实验室产前诊断中的应用%Prenatal diagnosis by array-based comparative genomic hybridization in the clinical laboratory setting

    Institute of Scientific and Technical Information of China (English)

    Amy M. BREMAN; 毕为民; 张秀慧

    2009-01-01

    Array-based comparative genomic hybridization (array CGH), a method used to detect gains or losses of genetic material, has recently been applied to prenatal diagnosis of genomic imbalance in the clinical laboratory setting. This new and exciting diagnostic tool represents a major technological step forward in cytogenetic testing and addresses many of the limitations of current cytogenetic methods.Conventional chromosome analysis, the current gold standard in prenatal diagnosis, focuses primarily on the detection of common aneuploidies and is limited by its capacity to detect only those copy number changes that are large enough to be microscopically visible (typically 5-6 Mb in size at the 500 band level). In contrast, array CGH analysis simultaneously evaluates regions across the entire genome and al-lows for detection of unbalanced structural and numerical chromosome abnormalities of less than one hun-dred kb. Array CGH analysis also overcomes some of the limitations of chromosome analysis, such as the requirement for cell culture and longer reporting time, by using direct uncultured fetal specimens. With many diagnostic laboratories now embracing this technology, the past year has seen tremendous growth in the use of array CGH analysis for prenatal diagnosis. This review aims to summarize array CGH methodology and its current applications in prenatal diagnosis.

  1. The optimizations of CGH generation algorithms based on multiple GPUs for 3D dynamic holographic display

    Science.gov (United States)

    Yang, Dan; Liu, Juan; Zhang, Yingxi; Li, Xin; Wang, Yongtian

    2016-10-01

    Holographic display has been considered as a promising display technology. Currently, low-speed generation of holograms with big holographic data is one of crucial bottlenecks for three dimensional (3D) dynamic holographic display. To solve this problem, the acceleration method computation platform is presented based on look-up table point source method. The computer generated holograms (CGHs) acquisition is sped up by offline file loading and inline calculation optimization, where a pure phase CGH with gigabyte data is encoded to record an object with 10 MB sampling data. Both numerical simulation and optical experiment demonstrate that the CGHs with 1920×1080 resolution by the proposed method can be applied to the 3D objects reconstruction with high quality successfully. It is believed that the CGHs with huge data can be generated by the proposed method with high speed for 3D dynamic holographic display in near future.

  2. Correlation between localization, age, and chromosomal imbalances in ependymal tumours as detected by CGH.

    Science.gov (United States)

    Jeuken, Judith W M; Sprenger, Sandra H E; Gilhuis, Job; Teepen, Hans L J M; Grotenhuis, Andre J; Wesseling, Pieter

    2002-06-01

    Ependymal tumours (ETs) are gliomas that arise from the ependymal lining of the cerebral ventricles and from the remnants of the central canal of the spinal cord. Both clinical and genetic studies suggest that distinct genetic subtypes of ETs exist, the subtypes being correlated with patient age and/or tumour site. In the present study, the tumour genome of 20 ETs (15 adult and five paediatric cases) was screened for chromosomal imbalances by comparative genomic hybridization (CGH). The most frequently detected imbalances were -22q (75%), -10q (65%), -21 (50%), -16p (50%), -1p (45%), +4q (45%), -10p (45%), -2q (40%), -6 (40%), -19 (40%), -2p (35%), -3p (35%), and -16q (35%). Comparison of the chromosomal imbalances detected in ETs with those previously reported in oligodendroglial and astrocytic tumours revealed that in this respect ETs show similarities to these other gliomas. By combining these results with those of a recent study of Zheng et al. and Hirose et al., it was found that although ETs from different sites and from adult and paediatric patients show overlap at the CGH level, some chromosomal imbalances occur predominantly in a certain category. In adult patients, spinal ETs relatively often showed +2, +7, +12, and -14q; infratentorial ETs -22; and supratentorial ETs -9. In addition, in posterior fossa ETs, -6 and +9 were much more frequent in adults than in children. It is concluded that the genetic background of ETs is complex and partly determined by tumour site, histopathological subtype, and age of the patient.

  3. Rational design of two-dimensional molecular donor-acceptor nanostructure arrays

    Science.gov (United States)

    Zhang, Jia Lin; Zhong, Shu; Zhong, Jian Qiang; Niu, Tian Chao; Hu, Wen Ping; Wee, Andrew Thye Shen; Chen, Wei

    2015-02-01

    The construction of long-range ordered organic donor-acceptor nanostructure arrays over microscopic areas supported on solid substrates is one of the most challenging tasks towards the realization of molecular nanodevices. They can also be used as ideal model systems to understand light induced charge transfer, charge separation and energy conversion processes and mechanisms at the nanometer scale. The aim of this paper is to highlight recent advances and progress in this topic. Special attention is given to two different strategies for the construction of organic donor-acceptor nanostructure arrays, namely (i) molecular self-assembly on artificially patterned or pre-defined molecular surface nanotemplates and (ii) molecular nanostructure formation steered via directional and selective intermolecular interactions. The interfacial charge transfer and the energy level alignment of these donor-acceptor nanostructures are also discussed.

  4. A New Design for Array Multiplier with Trade off in Power and Area

    CERN Document Server

    Ravi, Nirlakalla; Prasad, T Jayachandra; Rao, T Subba

    2011-01-01

    In this paper a low power and low area array multiplier with carry save adder is proposed. The proposed adder eliminates the final addition stage of the multiplier than the conventional parallel array multiplier. The conventional and proposed multiplier both are synthesized with 16-T full adder. Among Transmission Gate, Transmission Function Adder, 14-T, 16-T full adder shows energy efficiency. In the proposed 4x4 multiplier to add carry bits with out using Ripple Carry Adder (RCA) in the final stage, the carries given to the input of the next left column input. Due to this the proposed multiplier shows 56 less transistor count, then cause trade off in power and area. The proposed multiplier has shown 13.91% less power, 34.09% more speed and 59.91% less energy consumption for TSMC 0.18nm technology at a supply voltage 2.0V than the conventional multiplier.

  5. Design and Implementation of a Hall Effect Sensor Array Applied to Recycling Hard Drive Magnets

    Energy Technology Data Exchange (ETDEWEB)

    Kisner, Roger [ORNL; Lenarduzzi, Roberto [ORNL; Killough, Stephen M [ORNL; McIntyre, Timothy J [ORNL

    2015-01-01

    Rare earths are an important resource for many electronic components and technologies. Examples abound including Neodymium magnets used in mobile devices and computer hard drives (HDDs), and a variety of renewable energy technologies (e.g., wind turbines). Approximately 21,000 metric tons of Neodymium is processed annually with less than 1% being recycled. An economic system to assist in the recycling of magnet material from post-consumer goods, such as Neodymium Iron Boron magnets commonly found in hard drives is presented. A central component of this recycling measurement system uses an array of 128 Hall Effect sensors arranged in two columns to detect the magnetic flux lines orthogonal to the HDD. Results of using the system to scan planar shaped objects such as hard drives to identify and spatially locate rare-earth magnets for removal and recycling from HDDs are presented. Applications of the sensor array in other identification and localization of magnetic components and assemblies will be presented.

  6. Experimental design, analysis of variance and slide quality assessment in gene expression arrays.

    Science.gov (United States)

    Draghici, S; Kuklin, A; Hoff, B; Shams, S

    2001-05-01

    A microarray experiment is a sequence of complicated molecular biology procedures relying on various laboratory tools, instrumentation and experimenter's skills. This paper discusses statistical models for distinguishing small changes in gene expression from the noise in the system. It describes methods for assigning statistical confidence to gene expression values derived from a single array slide. Some of the theory is discussed in the context of practical applications via software usage.

  7. THE BARYON ACOUSTIC OSCILLATION BROADBAND AND BROAD-BEAM ARRAY: DESIGN OVERVIEW AND SENSITIVITY FORECASTS

    Energy Technology Data Exchange (ETDEWEB)

    Pober, Jonathan C.; Parsons, Aaron R.; McQuinn, Matthew; Ali, Zaki [Astronomy Department, University of California, Berkeley, CA (United States); DeBoer, David R. [Radio Astronomy Laboratory, University of California, Berkeley, CA (United States); McDonald, Patrick [Physics Division, Lawrence Berkeley National Laboratory, Berkeley, CA (United States); Aguirre, James E. [Department of Physics and Astronomy, University of Pennsylvania, Philadelphia, PA (United States); Bradley, Richard F. [Astronomy Department and Department of Electrical and Computer Engineering, University of Virginia, Charlottesville, VA (United States); Chang, Tzu-Ching [Institute of Astronomy and Astrophysics, Academia Sinica, Taipei, Taiwan (China); Morales, Miguel F. [Department of Physics, University of Washington, Seattle, WA (United States)

    2013-03-15

    This work describes a new instrument optimized for a detection of the neutral hydrogen 21 cm power spectrum between redshifts of 0.5 and 1.5: the Baryon Acoustic Oscillation Broadband and Broad-beam (BAOBAB) array. BAOBAB will build on the efforts of a first generation of 21 cm experiments that are targeting a detection of the signal from the Epoch of Reionization at z {approx} 10. At z {approx} 1, the emission from neutral hydrogen in self-shielded overdense halos also presents an accessible signal, since the dominant, synchrotron foreground emission is considerably fainter than at redshift 10. The principle science driver for these observations are baryon acoustic oscillations in the matter power spectrum which have the potential to act as a standard ruler and constrain the nature of dark energy. BAOBAB will fully correlate dual-polarization antenna tiles over the 600-900 MHz band with a frequency resolution of 300 kHz and a system temperature of 50 K. The number of antennas will grow in staged deployments, and reconfigurations of the array will allow for both traditional imaging and high power spectrum sensitivity operations. We present calculations of the power spectrum sensitivity for various array sizes, with a 35 element array measuring the cosmic neutral hydrogen fraction as a function of redshift, and a 132 element system detecting the BAO features in the power spectrum, yielding a 1.8% error on the z {approx} 1 distance scale, and, in turn, significant improvements to constraints on the dark energy equation of state over an unprecedented range of redshifts from {approx}0.5 to 1.5.

  8. Design of crossed-mirror array to form floating 3D LED signs

    Science.gov (United States)

    Yamamoto, Hirotsugu; Bando, Hiroki; Kujime, Ryousuke; Suyama, Shiro

    2012-03-01

    3D representation of digital signage improves its significance and rapid notification of important points. Our goal is to realize floating 3D LED signs. The problem is there is no sufficient device to form floating 3D images from LEDs. LED lamp size is around 1 cm including wiring and substrates. Such large pitch increases display size and sometimes spoils image quality. The purpose of this paper is to develop optical device to meet the three requirements and to demonstrate floating 3D arrays of LEDs. We analytically investigate image formation by a crossed mirror structure with aerial aperture, called CMA (crossed-mirror array). CMA contains dihedral corner reflectors at each aperture. After double reflection, light rays emitted from an LED will converge into the corresponding image point. We have fabricated CMA for 3D array of LEDs. One CMA unit contains 20 x 20 apertures that are located diagonally. Floating image of LEDs was formed in wide range of incident angle. The image size of focused beam agreed to the apparent aperture size. When LEDs were located three-dimensionally (LEDs in three depths), the focused distances were the same as the distance between the real LED and the CMA.

  9. Prenatal Diagnosis of a Fetus with de novo Supernumerary Ring Chromosome 16 Characterized by Array Comparative Genomic Hybridization

    Directory of Open Access Journals (Sweden)

    Pietro Cignini

    2011-09-01

    Full Text Available A fetus with de novo ring chromosome 16 is presented. At 20 weeks' gestation, ultrasound examination demonstrated bilateral clubfoot, bilateral renal pyelectasis, hypoplasia of the corpus callosum, and transposition of the great vessel. Amniocentesis was performed. Chromosome analysis identified a ring chromosome 16 [47,XY,r(16] and array comparative genomic hybridization (a-CGH demonstrated that the ring included the euchromatic portion 16p11.2. Postmortem examination confirmed prenatal findings. This is the first case of de novo ring chromosome 16 diagnosed prenatally with a new phenotypic pattern and also reinforces the importance of offering amniocentesis with a-CGH if fetal anomalies are detected.

  10. Design of crossing metallic metasurface arrays based on high sensitivity of gap enhancement and transmittance shift for plasmonic sensing applications

    Science.gov (United States)

    Chou Chau, Yuan-Fong; Syu, Jhih-Yu; Chou Chao, Chung-Ting; Chiang, Hai-Pang; Lim, Chee Ming

    2017-02-01

    We have systematically investigated a general approach to optimize the optical performances of a 2D array of crossing metal nanoparticle (MNP) thin film. These functionalized metasurface MNPs are designed for use as wavelength-selection filters in high-sensitivity infrared spectroscopic plasmonic sensors. The effects of different structural parameters corresponding to the gap-enhancement and bonded transmittance modes on MNP arrays are studied. Two types of sensor configurations based on gold MNP arrays are thoroughly investigated by using the finite element method. The calculated transmittance spectra of the proposed metasurfaces demonstrate near-infrared transmittance dips with a sensitivity range of 120-700 nm RIU-1 in a dielectric constant (ɛ) ranging from 1.0-3.0. We illustrate that it is possible to increase their sensitivity in the detection of chemical and biological substances. The proposed metasurfaces supporting both core-medium sensitivity and bonded-mode resonances are desirable for label-free sensing applications.

  11. Optimizing and Improving the Growth Quality of ZnO Nanowire Arrays Guided by Statistical Design of Experiments.

    Science.gov (United States)

    Xu, Sheng; Adiga, Nagesh; Ba, Shan; Dasgupta, Tirthankar; Wu, C F Jeff; Wang, Zhong Lin

    2009-07-28

    Controlling the morphology of the as-synthesized nanostructures is usually challenging, and there lacks of a general theoretical guidance in experimental approach. In this study, a novel way of optimizing the aspect ratio of hydrothermally grown ZnO nanowire (NW) arrays is presented by utilizing a systematic statistical design and analysis method. In this work, we use pick-the-winner rule and one-pair-at-a-time main effect analysis to sequentially design the experiments and identify optimal reaction settings. By controlling the hydrothermal reaction parameters (reaction temperature, time, precursor concentration, and capping agent), we improved the aspect ratio of ZnO NWs from around 10 to nearly 23. The effect of noise on the experimental results was identified and successfully reduced, and the statistical design and analysis methods were very effective in reducing the number of experiments performed and in identifying the optimal experimental settings. In addition, the antireflection spectrum of the as-synthesized ZnO NWs clearly shows that higher aspect ratio of the ZnO NW arrays leads to about 30% stronger suppression in the UV-vis range emission. This shows great potential applications as antireflective coating layers in photovoltaic devices.

  12. Design of a Weighted-Rotor Energy Harvester Based on Dynamic Analysis and Optimization of Circular Halbach Array Magnetic Disk

    Directory of Open Access Journals (Sweden)

    Yu-Jen Wang

    2015-03-01

    Full Text Available This paper proposes the design of a weighted-rotor energy harvester (WREH in which the oscillation is caused by the periodic change of the tangential component of gravity, to harvest kinetic energy from a rotating wheel. When a WREH is designed with a suitable characteristic length, the rotor’s natural frequency changes according to the wheel rotation speed and the rotor oscillates at a wide angle and high angular velocity to generate a large amount of power. The magnetic disk is designed according to an optimized circular Halbach array. The optimized circular Halbach array magnetic disk provides the largest induced EMF for different sector-angle ratios for the same magnetic disk volume. This study examined the output voltage and power by considering the constant and accelerating plate-rotation speeds, respectively. This paper discusses the effects of the angular acceleration speed of a rotating wheel corresponding to the dynamic behaviors of a weighted rotor. The average output power is 399 to 535 microwatts at plate-rotation speeds from 300 to 500 rpm, enabling the WREH to be a suitable power source for a tire-pressure monitoring system.

  13. Design and fabrication of a multi-purpose soft x-ray array diagnostic system for KSTAR.

    Science.gov (United States)

    Lee, Seung Hun; Chai, Kil Byoung; Jang, Siwon; Ko, Won-Ha; Kim, Junghee; Seo, Dongcheol; Lee, Jongha; Bogatu, I N; Kim, Jin-Soo; Choe, Wonho

    2012-10-01

    A multi-purpose soft x-ray array diagnostic system was developed for measuring two-dimensional x-ray emissivity profile, electron temperature, Ar impurity transport, and total radiation power. A remotely controlled filter wheel was designed with three different choices of filters. The electron temperature profile can be determined from the ratio of two channels having different thickness of Be layer, and the Ar impurity concentration transport can be determined from a pair of Ar Ross filters (CaF(2) and NaCl thin films). Without any filters, this diagnostic system can also be used as a bolometer.

  14. Designing an array for performing Near-field Acoustic Holography with a small number of p-u probes

    DEFF Research Database (Denmark)

    Fernandez Comesaña, Daniel; Wen, Junjie; Fernandez Grande, Efren

    2016-01-01

    , such approaches usually require that a large number of transducers is spatially distributed over the area of interest. This paper describes some practical considerations for the design and optimization of a compact sensor array for performing NAH with a small number of sound intensity p-u probes. Two sensor...... geometries based on hexagonal lattice and polar sampling are assessed and compared to a regular square grid via Monte Carlo simulations accounting for multiple source configurations. Results show that transducer placement plays an important role in the robustness and accuracy of the results, specially...

  15. Accurate two-dimensional model of an arrayed-waveguide grating demultiplexer and optimal design based on the reciprocity theory.

    Science.gov (United States)

    Dai, Daoxin; He, Sailing

    2004-12-01

    An accurate two-dimensional (2D) model is introduced for the simulation of an arrayed-waveguide grating (AWG) demultiplexer by integrating the field distribution along the vertical direction. The equivalent 2D model has almost the same accuracy as the original three-dimensional model and is more accurate for the AWG considered here than the conventional 2D model based on the effective-index method. To further improve the computational efficiency, the reciprocity theory is applied to the optimal design of a flat-top AWG demultiplexer with a special input structure.

  16. Analysis of Chinese women with primary ovarian insufficiency by high resolution array-comparative genomic hybridization

    Institute of Scientific and Technical Information of China (English)

    LIAO Can; FU Fang; YANG Xin; SUN Yi-min; LI Dong-zhi

    2011-01-01

    Background Primary ovarian insufficiency (POI) is defined as a primary ovarian defect characterized by absent menarche (primary amenorrhea) or premature depletion of ovarian follicles before the age of 40 years. The etiology of primary ovarian insufficiency in human female patients is still unclear. The purpose of this study is to investigate the potential genetic causes in primary amenorrhea patients by high resolution array based comparative genomic hybridization (array-CGH) analysis.Methods Following the standard karyotyping analysis, genomic DNA from whole blood of 15 primary amenorrhea patients and 15 normal control women was hybridized with Affymetrix cytogenetic 2.7M arrays following the standard protocol. Copy number variations identified by array-CGH were confirmed by real time polymerase chain reaction.Results All the 30 samples were negative by conventional karyotyping analysis. Microdeletions on chromosome 17q21.31-q21.32 with approximately 1.3 Mb were identified in four patients by high resolution array-CGH analysis. This included the female reproductive secretory pathway related factor N-ethylmaleimide-sensitive factor (NSF) gene.Conclusions The results of the present study suggest that there may be critical regions regulating primary ovarian insufficiency in women with a 17q21.31-q21.32 microdeletion. This effect might be due to the loss of function of the NSF gene/genes within the deleted region or to effects on contiguous genes.

  17. Problems on design of computer-generated holograms for testing aspheric surfaces: principle and calculation

    Institute of Scientific and Technical Information of China (English)

    Zhishan Gao; Meimei Kong; Rihong Zhu; Lei Chen

    2007-01-01

    Interferometric optical testing using computer-generated hologram (CGH) has provided an approach to highly accurate measurement of aspheric surfaces. While designing the CGH null correctors, we should make them with as small aperture and low spatial frequency as possible, and with no zero slope of phase except at center, for the sake of insuring lowisk of substrate figure error and feasibility of fabrication. On the basis of classic optics, a set of equations for calculating the phase function of CGH are obtained. These equations lead us to find the dependence of the aperture and spatial frequency on the axial diszance from the tested aspheric surface for the CGH. We also simulatethe ptical path difference error of the CGH relative to the accuracy of controlling laser spot during fabrication. Meanwhile, we discuss the constraints used to avoid zero slope of phase except at center and give a design result of the CGH for the tested aspheric surface. The results ensure the feasibility of designing a useful CGH to test aspheric urface fundamentally.

  18. A 34K SNP genotyping array for Populus trichocarpa: design, application to the study of natural populations and transferability to other Populus species.

    Science.gov (United States)

    Geraldes, A; Difazio, S P; Slavov, G T; Ranjan, P; Muchero, W; Hannemann, J; Gunter, L E; Wymore, A M; Grassa, C J; Farzaneh, N; Porth, I; McKown, A D; Skyba, O; Li, E; Fujita, M; Klápště, J; Martin, J; Schackwitz, W; Pennacchio, C; Rokhsar, D; Friedmann, M C; Wasteneys, G O; Guy, R D; El-Kassaby, Y A; Mansfield, S D; Cronk, Q C B; Ehlting, J; Douglas, C J; Tuskan, G A

    2013-03-01

    Genetic mapping of quantitative traits requires genotypic data for large numbers of markers in many individuals. For such studies, the use of large single nucleotide polymorphism (SNP) genotyping arrays still offers the most cost-effective solution. Herein we report on the design and performance of a SNP genotyping array for Populus trichocarpa (black cottonwood). This genotyping array was designed with SNPs pre-ascertained in 34 wild accessions covering most of the species latitudinal range. We adopted a candidate gene approach to the array design that resulted in the selection of 34 131 SNPs, the majority of which are located in, or within 2 kb of, 3543 candidate genes. A subset of the SNPs on the array (539) was selected based on patterns of variation among the SNP discovery accessions. We show that more than 95% of the loci produce high quality genotypes and that the genotyping error rate for these is likely below 2%. We demonstrate that even among small numbers of samples (n = 10) from local populations over 84% of loci are polymorphic. We also tested the applicability of the array to other species in the genus and found that the number of polymorphic loci decreases rapidly with genetic distance, with the largest numbers detected in other species in section Tacamahaca. Finally, we provide evidence for the utility of the array to address evolutionary questions such as intraspecific studies of genetic differentiation, species assignment and the detection of natural hybrids.

  19. Top-down design of magnonic crystals from bottom-up magnetic nanoparticles through protein arrays

    Science.gov (United States)

    Okuda, M.; Schwarze, T.; Eloi, J.-C.; Jones, S. E. Ward; Heard, P. J.; Sarua, A.; Ahmad, E.; Kruglyak, V. V.; Grundler, D.; Schwarzacher, W.

    2017-04-01

    We show that chemical fixation enables top-down micro-machining of large periodic 3D arrays of protein-encapsulated magnetic nanoparticles (NPs) without loss of order. We machined 3D micro-cubes containing a superlattice of NPs by means of focused ion beam etching, integrated an individual micro-cube to a thin-film coplanar waveguide and measured the resonant microwave response. Our work represents a major step towards well-defined magnonic metamaterials created from the self-assembly of magnetic nanoparticles.

  20. Slant transform applied to electric power quality detection with field programmable gate array design enhanced

    Energy Technology Data Exchange (ETDEWEB)

    Hsieh, Cheng-Tao [Dept. of Electrical Engineering, Kun Shan University, Tainan (China); Lin, Jeu-Min [Dept. of Electrical Engineering, Far East University, Tainan (China); Huang, Shyh-Jier [Dept. of Electrical Engineering, National Cheng Kung University, Tainan (China)

    2010-06-15

    In this paper, a slantlet transform is proposed with the field-programmable gate array (FPGA) hardware realization for electrical power system disturbance detection. By embedding the slantlet functions into wavelet basis, the method is anticipated to increase the capability of signal discrimination, hence improving the grasping the disturbance intrusion. Furthermore, with the hardware realization of FPGA chip, the practicality of the method can be better ensured. In order to validate the effectiveness of the proposed approach, several scenarios have been considered and verified with good agreement. (author)

  1. Design of a Dielectric Rod Waveguide Antenna Array for Millimeter Waves

    Science.gov (United States)

    Rivera-Lavado, Alejandro; García-Muñoz, Luis-Enrique; Generalov, Andrey; Lioubtchenko, Dmitri; Abdalmalak, Kerlos-Atia; Llorente-Romano, Sergio; García-Lampérez, Alejandro; Segovia-Vargas, Daniel; Räisänen, Antti V.

    2016-09-01

    In this manuscript, the use of dielectric rod waveguide (DRW) antennas in the millimeter and sub-millimeter wave range is presented as a solution for covering two issues: getting more radiated power and filling a technological gap problem in the terahertz band, namely a fully electronic beam steering. A 4x4 element array working at 100 GHz fed by a rectangular waveguide is manufactured and measured for showing its capabilities. This topology can be used as a cost-affordable alternative to dielectric lenses in photomixer-based terahertz sources.

  2. Design of a Dielectric Rod Waveguide Antenna Array for Millimeter Waves

    Science.gov (United States)

    Rivera-Lavado, Alejandro; García-Muñoz, Luis-Enrique; Generalov, Andrey; Lioubtchenko, Dmitri; Abdalmalak, Kerlos-Atia; Llorente-Romano, Sergio; García-Lampérez, Alejandro; Segovia-Vargas, Daniel; Räisänen, Antti V.

    2017-01-01

    In this manuscript, the use of dielectric rod waveguide (DRW) antennas in the millimeter and sub-millimeter wave range is presented as a solution for covering two issues: getting more radiated power and filling a technological gap problem in the terahertz band, namely a fully electronic beam steering. A 4x4 element array working at 100 GHz fed by a rectangular waveguide is manufactured and measured for showing its capabilities. This topology can be used as a cost-affordable alternative to dielectric lenses in photomixer-based terahertz sources.

  3. Design and optimization of micro-semiconductor bridge used for solid propellant microthrusters array

    Science.gov (United States)

    Ru, Chengbo; Dai, Ji; Xu, Jianbing; Ye, Yinghua; Zhu, Peng; Shen, Ruiqi

    2016-06-01

    Igniter is the basic component of MEMS-based solid propellant microthrusters (SPM) array, which should response fast with low dissipated energy. To satisfy the requirements, micro-semiconductor bridge (MSCB) with dual V-angles contributing to the reduction of dissipated energy is introduced into the array. The electrical explosion characteristics of MSCB investigated under constant voltage, in the considerations of the limit of power supply in the micro/nanosatellite, are similar to those under capacitive discharge. The bridge was completely vaporized and burst into the hot plasma under high-level voltage. While under low-level voltage, the bridge was partly vaporized without detected plasma. The 3#SCB (90° V-angle) with the smallest power density resulting in the lowest applied voltage (12.0 V) and the 2#SCB with the smallest narrow width (Wmin) leading to the lowest average power (11.3 W) were chosen to the further optimization. The ignition tests were implemented to examine the ignition reliability of the contractible igniters, which were optimized to satisfy the voltage limitation with sufficient ignition capacity. The results show that the effective SCB with lowest dissipated power is the 3#-3SCB, which function within 100 μ under 7.0 V, and the average power below 5.0 W.

  4. Design and operation of a portable scanner for high performance microchip capillary array electrophoresis.

    Science.gov (United States)

    Scherer, James R; Liu, Peng; Mathies, Richard A

    2010-11-01

    We have developed a compact, laser-induced fluorescence detection scanner, the multichannel capillary array electrophoresis portable scanner (McCAEPs) as a platform for electrophoretic detection and control of high-throughput, integrated microfluidic devices for genetic and other analyses. The instrument contains a confocal optical system with a rotary objective for detecting four different fluorescence signals, a pneumatic system consisting of two pressure/vacuum pumps and 28 individual addressable solenoid valves for control of on-chip microvalves and micropumps, four Polymerase Chain Reaction (PCR) temperature control systems, and four high voltage power supplies for electrophoresis. The detection limit of the instrument is ~20 pM for on-chip capillary electrophoresis of fluorescein dyes. To demonstrate the system performance for forensic short tandem repeat (STR) analysis, two experiments were conducted: (i) electrophoretic separation and detection of STR samples on a 96-lane microfabricated capillary array electrophoresis microchip. Fully resolved PowerPlex(®) 16 STR profiles amplified from 1 ng of 9947A female standard DNA were successfully obtained; (ii) nine-plex STR amplification, sample injection, separation, and fluorescence detection of 100-copy 9948 male standard DNA in a single integrated PCR- capillary electrophoresis microchip. These results demonstrate that the McCAEPs can be used as a versatile control and detection instrument that operates integrated microfluidic devices for high-performance forensic human identification.

  5. Design, Construction, and Qualification of a Microscale Heater Array for Use in Boiling Heat Transfer

    Science.gov (United States)

    Rule, T. D.; Kim, J.; Kalkur, T. S.

    1998-01-01

    Boiling heat transfer is an efficient means of heat transfer because a large amount of heat can be removed from a surface using a relatively small temperature difference between the surface and the bulk liquid. However, the mechanisms that govern boiling heat transfer are not well understood. Measurements of wall temperature and heat flux near the wall would add to the database of knowledge which is necessary to understand the mechanisms of nucleate boiling. A heater array has been developed which contains 96 heater elements within a 2.5 mm square area. The temperature of each heater element is held constant by an electronic control system similar to a hot-wire anemometer. The voltage that is being applied to each heater element can be measured and digitized using a high-speed A/D converter, and this digital information can be compiled into a series of heat-flux maps. Information for up to 10,000 heat flux maps can be obtained each second. The heater control system, the A/D system and the heater array construction are described in detail. Results are presented which show that this is an effective method of measuring the local heat flux during nucleate and transition boiling. Heat flux maps are obtained for pool boiling in FC-72 on a horizontal surface. Local heat flux variations are shown to be three to six times larger than variations in the spatially averaged heat flux.

  6. Modeling and Simulation of Phased Array Antennas to Support Next-Generation Satellite Design

    Science.gov (United States)

    Tchorowski, Nicole; Murawski, Robert; Manning, Robert; Fuentes, Michael

    2016-01-01

    Developing enhanced simulation capabilities has become a significant priority for the Space Communications and Navigation (SCaN) project at NASA as new space communications technologies are proposed to replace aging NASA communications assets, such as the Tracking and Data Relay Satellite System (TDRSS). When developing the architecture for these new space communications assets, it is important to develop updated modeling and simulation methodologies, such that competing architectures can be weighed against one another and the optimal path forward can be determined. There have been many simulation tools developed here at NASA for the simulation of single RF link budgets, or for the modeling and simulation of an entire network of spacecraft and their supporting SCaN network elements. However, the modeling capabilities are never fully complete and as new technologies are proposed, gaps are identified. One such gap is the ability to rapidly develop high fidelity simulation models of electronically steerable phased array systems. As future relay satellite architectures are proposed that include optical communications links, electronically steerable antennas will become more desirable due to the reduction in platform vibration introduced by mechanically steerable devices. In this research, we investigate how modeling of these antennas can be introduced into out overall simulation and modeling structure. The ultimate goal of this research is two-fold. First, to enable NASA engineers to model various proposed simulation architectures and determine which proposed architecture meets the given architectural requirements. Second, given a set of communications link requirements for a proposed satellite architecture, determine the optimal configuration for a phased array antenna. There is a variety of tools available that can be used to model phased array antennas. To meet our stated goals, the first objective of this research is to compare the subset of tools available to us

  7. Design of a portable noninvasive photoacoustic glucose monitoring system integrated laser diode excitation with annular array detection

    Science.gov (United States)

    Zeng, Lvming; Liu, Guodong; Yang, Diwu; Ren, Zhong; Huang, Zhen

    2008-12-01

    A near-infrared photoacoustic glucose monitoring system, which is integrated dual-wavelength pulsed laser diode excitation with eight-element planar annular array detection technique, is designed and fabricated during this study. It has the characteristics of nonivasive, inexpensive, portable, accurate location, and high signal-to-noise ratio. In the system, the exciting source is based on two laser diodes with wavelengths of 905 nm and 1550 nm, respectively, with optical pulse energy of 20 μJ and 6 μJ. The laser beam is optically focused and jointly projected to a confocal point with a diameter of 0.7 mm approximately. A 7.5 MHz 8-element annular array transducer with a hollow structure is machined to capture photoacoustic signal in backward mode. The captured signals excitated from blood glucose are processed with a synthetic focusing algorithm to obtain high signal-to-noise ratio and accurate location over a range of axial detection depth. The custom-made transducer with equal area elements is coaxially collimated with the laser source to improve the photoacoustic excite/receive efficiency. In the paper, we introduce the photoacoustic theory, receive/process technique, and design method of the portable noninvasive photoacoustic glucose monitoring system, which can potentially be developed as a powerful diagnosis and treatment tool for diabetes mellitus.

  8. Gimbals Drive and Control Electronics Design, Development and Testing of the LRO High Gain Antenna and Solar Array Systems

    Science.gov (United States)

    Chernyakov, Boris; Thakore, Kamal

    2010-01-01

    Launched June 18, 2009 on an Atlas V rocket, NASA's Lunar Reconnaissance Orbiter (LRO) is the first step in NASA's Vision for Space Exploration program and for a human return to the Moon. The spacecraft (SC) carries a wide variety of scientific instruments and provides an extraordinary opportunity to study the lunar landscape at resolutions and over time scales never achieved before. The spacecraft systems are designed to enable achievement of LRO's mission requirements. To that end, LRO's mechanical system employed two two-axis gimbal assemblies used to drive the deployment and articulation of the Solar Array System (SAS) and the High Gain Antenna System (HGAS). This paper describes the design, development, integration, and testing of Gimbal Control Electronics (GCE) and Actuators for both the HGAS and SAS systems, as well as flight testing during the on-orbit commissioning phase and lessons learned.

  9. Intragenic rearrangements in X-linked intellectual deficiency: results of a-CGH in a series of 54 patients and identification of TRPC5 and KLHL15 as potential XLID genes.

    Science.gov (United States)

    Mignon-Ravix, Cécile; Cacciagli, Pierre; Choucair, Nancy; Popovici, Cornel; Missirian, Chantal; Milh, Mathieu; Mégarbané, André; Busa, Tiffany; Julia, Sophie; Girard, Nadine; Badens, Catherine; Sigaudy, Sabine; Philip, Nicole; Villard, Laurent

    2014-08-01

    High-resolution array comparative genomic hybridization (a-CGH) enables the detection of intragenic rearrangements, such as single exon deletion or duplication. This approach can lead to the identification of new disease genes. We report on the analysis of 54 male patients presenting with intellectual deficiency (ID) and a family history suggesting X-linked (XL) inheritance or maternal skewed X-chromosome inactivation (XCI), using a home-made X-chromosome-specific microarray covering the whole human X-chromosome at high resolution. The majority of patients had whole genome array-CGH prior to the selection and we did not include large rearrangements such as MECP2 and FMR1 duplications. We identified four rearrangements considered as causative or potentially pathogenic, corresponding to a detection rate of 8%. Two CNVs affected known XLID genes and were therefore considered as causative (IL1RAPL1 and OPHN1 intragenic deletions). Two new CNVs were considered as potentially pathogenic as they affected interesting candidates for ID. The first CNV is a deletion of the first exon of the TRPC5 gene, encoding a cation channel implicated in dendrite growth and patterning, in a child presenting with ID and an autism spectrum disorder (ASD). The second CNV is a partial deletion of KLHL15, in a patient with severe ID, epilepsy, and anomalies of cortical development. In both cases, in spite of strong arguments for clinical relevance, we were not able at this stage to confirm pathogenicity of the mutations, and the causality of the variants identified in XLID remains to be confirmed.

  10. Array-CGH reveals recurrent genomic changes in Merkel cell carcinoma including amplification of L-Myc.

    Science.gov (United States)

    Paulson, Kelly G; Lemos, Bianca D; Feng, Bin; Jaimes, Natalia; Peñas, Pablo F; Bi, Xiaohui; Maher, Elizabeth; Cohen, Lisa; Leonard, J Helen; Granter, Scott R; Chin, Lynda; Nghiem, Paul

    2009-06-01

    Merkel cell carcinoma (MCC) is an aggressive neuroendocrine skin cancer with poorly characterized genetics. We performed high resolution comparative genomic hybridization on 25 MCC specimens using a high-density oligonucleotide microarray. Tumors frequently carried extra copies of chromosomes 1, 3q, 5p, and 6 and lost chromosomes 3p, 4, 5q, 7, 10, and 13. MCC tumors with less genomic aberration were associated with improved survival (P=0.04). Tumors from 13 of 22 MCC patients had detectable Merkel cell polyomavirus DNA, and these tumors had fewer genomic deletions. Three regions of genomic alteration were of particular interest: a deletion of 5q12-21 occurred in 26% of tumors, a deletion of 13q14-21 was recurrent in 26% of tumors and contains the well-characterized tumor suppressor RB1, and a previously unreported focal amplification at 1p34 was present in 39% of tumors and centers on L-Myc (MYCL1). L-Myc is related to the c-Myc proto-oncogene, has transforming activity, and is amplified in the closely related small cell lung cancer. Normal skin showed no L-Myc expression, whereas 4/4 MCC specimens tested expressed L-Myc RNA in relative proportion to the DNA copy number gain. These findings suggest several genes that may contribute to MCC pathogenesis, most notably L-Myc.

  11. Targeted Resequencing of 9p in Acute Lymphoblastic Leukemia Yields Concordant Results with Array CGH and Reveals Novel Genomic Alterations

    NARCIS (Netherlands)

    Sarhadi, V.K.; Lahti, L.M.; Scheinin, I.; Tyybäkinoja, A.; Savola, S.; Usvasalo, A.; Räty, R.; Elonen, E.; Saarinen-Pihkala, U.M.; Knuutila, S.

    2013-01-01

    Genetic alterations of the short arm of chromosome 9 are frequent in acute lymphoblastic leukemia. We performed targeted sequencing of 9p region in 35 adolescent and adult acute lymphoblastic leukemia patients and sought to investigate the sensitivity of detecting copy number alterations in comparis

  12. Ligand and Metalloligand Design for Macrocycles, Multimetallic Arrays, Coordination Polymers and Assemblies

    OpenAIRE

    E. C. Constable; Housecroft, C. E.

    2016-01-01

    This overview of ligand design focuses on three areas: (i) principles of ligand binding, the formation of complexes, and popular strategies for ligand synthesis; (ii) ligand design in macrocyclic complexes, coordination polymers and networks and metallopolygons, and assembly strategies based upon the use of metalloligand building blocks; (iii) ligand design for the extraction and transport of metals. This area of coordination chemistry is too large to permit a comprehensive survey in the spac...

  13. Design and Implementation of Video Shot Detection on Field Programmable Gate Arrays

    Directory of Open Access Journals (Sweden)

    Jharna Majumdar

    2012-09-01

    Full Text Available Video has become an interactive medium of communication in everyday life. The sheer volume of video makes it extremely difficult to browse through and find the required data. Hence extraction of key frames from the video which represents the abstract of the entire video becomes necessary. The aim of the video shot detection is to find the position of the shot boundaries, so that key frames can be selected from each shot for subsequent processing such as video summarization, indexing etc. For most of the surveillance applications like video summery, face recognition etc., the hardware (real time implementation of these algorithms becomes necessary. Here in this paper we present the architecture for simultaneous accessing of consecutive frames, which are then used for the implementation of various Video Shot Detection algorithms. We also present the real time implementation of three video shot detection algorithms using the above mentioned architecture on FPGA (Field Programmable Gate Arrays.

  14. Design of a GaAs/Ge Solar Array for Unmanned Aerial Vehicles

    Science.gov (United States)

    Scheiman, David A.; Brinker, David J.; Bents, David J.; Colozza, Anthony J.

    1995-01-01

    Unmanned Aerial Vehicles (UAV) are being proposed for many applications including surveillance, mapping and atmospheric studies. These applications require a lightweight, low speed, medium to long duration airplane. Due to the weight, speed, and altitude constraints imposed on such aircraft, solar array generated electric power is a viable alternative to air-breathing engines. Development of such aircraft is currently being funded under the Environmental Research Aircraft and Sensor Technology (ERAST) program. NASA Lewis Research Center (LeRC) is currently building a Solar Electric Airplane to demonstrate UAV technology. This aircraft utilizes high efficiency Applied Solar Energy Corporation (ASEC) GaAs/Ge space solar cells. The cells have been provided by the Air Force through the ManTech Office. Expected completion of the plane is early 1995, with the airplane currently undergoing flight testing using battery power.

  15. Design and Construction of a Fast Ion Loss Faraday Cup Array Diagnostic for JET

    Energy Technology Data Exchange (ETDEWEB)

    D.S. Darrow; S. Bauumel; F.E. Cecil; V. Kiptily; R. Ellis; L. Pedrick; A. Werner

    2004-04-26

    A thin foil Faraday cup array is being built to measure the loss of 3.5 MeV alpha particles and MeV ion cyclotron heating (ICH) tail ions on JET. It will consist of nine detectors spread over five different poloidal locations and three radial positions. They will measure the poloidal distribution and radial scrape off of the losses. The detectors will be comprised of four layers of thin (2.5 micron) Ni foil, giving some resolution of the lost particle energy distribution as different ranges of energies will stop in different layers of the detector. One detector will utilize eight thinner (1.0 micron) foils to obtain a better resolved energy distribution. These detectors will accept particles incident up to 45{sup o} from the normal to the foils.

  16. Design of an Acoustic Target Intrusion Detection System Based on Small-Aperture Microphone Array

    Science.gov (United States)

    Zu, Xingshui; Guo, Feng; Huang, Jingchang; Zhao, Qin; Liu, Huawei; Li, Baoqing; Yuan, Xiaobing

    2017-01-01

    Automated surveillance of remote locations in a wireless sensor network is dominated by the detection algorithm because actual intrusions in such locations are a rare event. Therefore, a detection method with low power consumption is crucial for persistent surveillance to ensure longevity of the sensor networks. A simple and effective two-stage algorithm composed of energy detector (ED) and delay detector (DD) with all its operations in time-domain using small-aperture microphone array (SAMA) is proposed. The algorithm analyzes the quite different velocities between wind noise and sound waves to improve the detection capability of ED in the surveillance area. Experiments in four different fields with three types of vehicles show that the algorithm is robust to wind noise and the probability of detection and false alarm are 96.67% and 2.857%, respectively. PMID:28273838

  17. Development of novel on-chip, customer-design spiral biasing adaptor on for Si drift detectors and detector arrays for X-ray and nuclear physics experiments

    Science.gov (United States)

    Li, Zheng; Chen, Wei

    2014-11-01

    A novel on-chip, customer-design spiral biasing adaptor (SBA) has been developed. A single SBA is used for biasing a Si drift detector (SDD) and SDD array. The use of an SBA reduces the biasing current. This paper shows the calculation of the geometry of an SBA and an SDD to get the best drift field in the SDD and SDD array. Prototype SBAs have been fabricated to verify the concept. Electrical measurements on these SBAs are in agreement with the expectations. The new SDD array with an SBA can be used for X-ray detection and in nuclear physics experiments.

  18. Development of novel on-chip, customer-design spiral biasing adaptor on for Si drift detectors and detector arrays for X-ray and nuclear physics experiments

    Energy Technology Data Exchange (ETDEWEB)

    Li, Zheng, E-mail: lizheng@xtu.edu.cn [School of Materials, Optoelectronics and Physics, Xiangtan University, Xiangtan, Hunan 411105 (China); Chen, Wei [Brookhaven National Laboratory, Upton, NY 11973 (United States)

    2014-11-21

    A novel on-chip, customer-design spiral biasing adaptor (SBA) has been developed. A single SBA is used for biasing a Si drift detector (SDD) and SDD array. The use of an SBA reduces the biasing current. This paper shows the calculation of the geometry of an SBA and an SDD to get the best drift field in the SDD and SDD array. Prototype SBAs have been fabricated to verify the concept. Electrical measurements on these SBAs are in agreement with the expectations. The new SDD array with an SBA can be used for X-ray detection and in nuclear physics experiments.

  19. Design, Construction, and Initial Test of High Spatial Resolution Thermometry Arrays for Detection of Surface Temperature Profiles on SRF Cavities in Super Fluid Helium

    Energy Technology Data Exchange (ETDEWEB)

    Ari Palczewski, Rongli Geng, Grigory Eremeev

    2011-07-01

    We designed and built two high resolution (0.6-0.55mm special resolution [1.1-1.2mm separation]) thermometry arrays prototypes out of the Allen Bradley 90-120 ohm 1/8 watt resistor to measure surface temperature profiles on SRF cavities. One array was designed to be physically flexible and conform to any location on a SRF cavity; the other was modeled after the common G-10/stycast 2850 thermometer and designed to fit on the equator of an ILC (Tesla 1.3GHz) SRF cavity. We will discuss the advantages and disadvantages of each array and their construction. In addition we will present a case study of the arrays performance on a real SRF cavity TB9NR001. TB9NR001 presented a unique opportunity to test the performance of each array as it contained a dual (4mm separation) cat eye defect which conventional methods such as OST (Oscillating Superleak second-sound Transducers) and full coverage thermometry mapping were unable to distinguish between. We will discuss the new arrays ability to distinguish between the two defects and their preheating performance.

  20. Clinical and cytogenetic features of a patient with partial trisomy 8q and partial monosomy 13q delineated by array comparative genomic hybridization.

    Science.gov (United States)

    Sohn, Young Bae; Yun, Jun No; Park, Sang-Jin; Park, Moon Sung; Kim, Sung Hwan; Lee, Jang Hoon

    2013-01-01

    Partial trisomy 8q is rare and has distinctive clinical features, including severe mental retardation, growth impairment, dysmorphic facial appearances, cleft palate, congenital heart disease, and urogenital anomalies. Partial monosomy 13q is a rare genetic disorder displaying a variety of phenotypic characteristics including mental retardation, dysmorphic facial features, and congenital anomalies. Here, we describe for the first time clinical observations and cytogenetic analysis of a patient with a concomitant occurrence of partial trisomy of 8q (8q21.3→qter) and partial monosomy 13q(13q34→qter). The patient was a female neonate with facial dysmorphia, agenesis of the corpus callosum, cleft palate, and congenital heart disease. G-band standard karyotype was 46,XX,add(13)(q34). To determine the origin of additional genomic gain in chromosome 13, array comparative genomic hybridization (CGH) was performed. Array CGH showed a 56.8 Mb sized gain on chromosome 8q and a 0.28 Mb sized loss on chromosome 13q. Therefore, the final karyotype of the patient was defined as 46,XX, der(13)t(8;13)(q21.3;q34). In conclusion, we described the clinical and cytogenetic analysis of the patient with concomitant occurrence of partial trisomy 8q and partial monosomy 13q delineated by array CGH. This report suggests that the array CGH would be a valuable diagnostic tool for identifying the origin of small additional genetic materials.

  1. Using Array-Based Comparative Genomic Hybridization to Diagnose Pallister-Killian Syndrome.

    Science.gov (United States)

    Lee, Mi Na; Lee, Jiwon; Yu, Hee Joon; Lee, Jeehun; Kim, Sun Hee

    2017-01-01

    Pallister-Killian syndrome (PKS) is a rare multisystem disorder characterized by isochromosome 12p and tissue-limited mosaic tetrasomy 12p. In this study, we diagnosed three pediatric patients who were suspicious of having PKS using array-based comparative genomic hybridization (array CGH) and FISH analyses performed on peripheral lymphocytes. Patients 1 and 2 presented with craniofacial dysmorphic features, hypotonia, and a developmental delay. Array CGH revealed two to three copies of 12p in patient 1 and three copies in patient 2. FISH analysis showed trisomy or tetrasomy 12p. Patient 3, who had clinical features comparable to those of patients 1 and 2, was diagnosed by using FISH analysis alone. Here, we report three patients with mosaic tetrasomy 12p. There have been only reported cases diagnosed by chromosome analysis and FISH analysis on skin fibroblast or amniotic fluid. To our knowledge, patient 1 was the first case diagnosed by using array CGH performed on peripheral lymphocytes in Korea.

  2. Objective assessment and design improvement of a staring, sparse transducer array by the spatial crosstalk matrix for 3D photoacoustic tomography.

    Science.gov (United States)

    Wong, Philip; Kosik, Ivan; Raess, Avery; Carson, Jeffrey J L

    2015-01-01

    Accurate reconstruction of 3D photoacoustic (PA) images requires detection of photoacoustic signals from many angles. Several groups have adopted staring ultrasound arrays, but assessment of array performance has been limited. We previously reported on a method to calibrate a 3D PA tomography (PAT) staring array system and analyze system performance using singular value decomposition (SVD). The developed SVD metric, however, was impractical for large system matrices, which are typical of 3D PAT problems. The present study consisted of two main objectives. The first objective aimed to introduce the crosstalk matrix concept to the field of PAT for system design. Figures-of-merit utilized in this study were root mean square error, peak signal-to-noise ratio, mean absolute error, and a three dimensional structural similarity index, which were derived between the normalized spatial crosstalk matrix and the identity matrix. The applicability of this approach for 3D PAT was validated by observing the response of the figures-of-merit in relation to well-understood PAT sampling characteristics (i.e. spatial and temporal sampling rate). The second objective aimed to utilize the figures-of-merit to characterize and improve the performance of a near-spherical staring array design. Transducer arrangement, array radius, and array angular coverage were the design parameters examined. We observed that the performance of a 129-element staring transducer array for 3D PAT could be improved by selection of optimal values of the design parameters. The results suggested that this formulation could be used to objectively characterize 3D PAT system performance and would enable the development of efficient strategies for system design optimization.

  3. Objective assessment and design improvement of a staring, sparse transducer array by the spatial crosstalk matrix for 3D photoacoustic tomography.

    Directory of Open Access Journals (Sweden)

    Philip Wong

    Full Text Available Accurate reconstruction of 3D photoacoustic (PA images requires detection of photoacoustic signals from many angles. Several groups have adopted staring ultrasound arrays, but assessment of array performance has been limited. We previously reported on a method to calibrate a 3D PA tomography (PAT staring array system and analyze system performance using singular value decomposition (SVD. The developed SVD metric, however, was impractical for large system matrices, which are typical of 3D PAT problems. The present study consisted of two main objectives. The first objective aimed to introduce the crosstalk matrix concept to the field of PAT for system design. Figures-of-merit utilized in this study were root mean square error, peak signal-to-noise ratio, mean absolute error, and a three dimensional structural similarity index, which were derived between the normalized spatial crosstalk matrix and the identity matrix. The applicability of this approach for 3D PAT was validated by observing the response of the figures-of-merit in relation to well-understood PAT sampling characteristics (i.e. spatial and temporal sampling rate. The second objective aimed to utilize the figures-of-merit to characterize and improve the performance of a near-spherical staring array design. Transducer arrangement, array radius, and array angular coverage were the design parameters examined. We observed that the performance of a 129-element staring transducer array for 3D PAT could be improved by selection of optimal values of the design parameters. The results suggested that this formulation could be used to objectively characterize 3D PAT system performance and would enable the development of efficient strategies for system design optimization.

  4. New Shortwave Array Spectroradiometer-Hemispheric (SAS-He): Hyperspectral Design and Initial Applications

    Energy Technology Data Exchange (ETDEWEB)

    Kassianov, Evgueni I.; Flynn, Connor J M.; Barnard, James C.; Ermold, Brian D.; Berg, Larry K.

    2016-10-31

    Aerosol optical depth (AOD) derived from hyperspectral measurements can serve as an invaluable input for simultaneous retrievals of particle size distributions and major trace gases. The required hyperspectral measurements are provided by a new ground-based radiometer, the so-called Shortwave Array Spectroradiometer-Hemispheric (SAS-He), recently developed with support from the Department of Energy (DOE) Office Atmospheric Radiation Measurement (ARM) Program. The SAS-He has wide spectral coverage (350-1700nm) and high spectral resolution: about 2.4 nm and 6 nm within 350-1000 nm and 970-1700 nm spectral ranges, respectively. To illustrate an initial performance of the SAS-He, we take advantage of integrated dataset collected during the ARM-supported Two-Column Aerosol Project (TCAP) over the US coastal region (Cape Cod, Massachusetts). This dataset includes AODs derived using data from Aerosol Robotic Network (AERONET) sunphotometer and Multi-Filter Rotating Shadowband Radiometer (MFRSR). We demonstrate that, on average, the SAS-He AODs closely match the MFRSR and AERONET AODs in the ultraviolet and visible spectral ranges for this area with highly variable AOD. Also, we discuss corrections of SAS-He total optical depth for gas absorption in the near-infrared spectral range and their operational implementation.

  5. Analysis of Reverse Phase Protein Array Data: From Experimental Design towards Targeted Biomarker Discovery

    Science.gov (United States)

    Wachter, Astrid; Bernhardt, Stephan; Beissbarth, Tim; Korf, Ulrike

    2015-01-01

    Mastering the systematic analysis of tumor tissues on a large scale has long been a technical challenge for proteomics. In 2001, reverse phase protein arrays (RPPA) were added to the repertoire of existing immunoassays, which, for the first time, allowed a profiling of minute amounts of tumor lysates even after microdissection. A characteristic feature of RPPA is its outstanding sample capacity permitting the analysis of thousands of samples in parallel as a routine task. Until today, the RPPA approach has matured to a robust and highly sensitive high-throughput platform, which is ideally suited for biomarker discovery. Concomitant with technical advancements, new bioinformatic tools were developed for data normalization and data analysis as outlined in detail in this review. Furthermore, biomarker signatures obtained by different RPPA screens were compared with another or with that obtained by other proteomic formats, if possible. Options for overcoming the downside of RPPA, which is the need to steadily validate new antibody batches, will be discussed. Finally, a debate on using RPPA to advance personalized medicine will conclude this article. PMID:27600238

  6. Analysis of Reverse Phase Protein Array Data: From Experimental Design towards Targeted Biomarker Discovery

    Directory of Open Access Journals (Sweden)

    Astrid Wachter

    2015-11-01

    Full Text Available Mastering the systematic analysis of tumor tissues on a large scale has long been a technical challenge for proteomics. In 2001, reverse phase protein arrays (RPPA were added to the repertoire of existing immunoassays, which, for the first time, allowed a profiling of minute amounts of tumor lysates even after microdissection. A characteristic feature of RPPA is its outstanding sample capacity permitting the analysis of thousands of samples in parallel as a routine task. Until today, the RPPA approach has matured to a robust and highly sensitive high-throughput platform, which is ideally suited for biomarker discovery. Concomitant with technical advancements, new bioinformatic tools were developed for data normalization and data analysis as outlined in detail in this review. Furthermore, biomarker signatures obtained by different RPPA screens were compared with another or with that obtained by other proteomic formats, if possible. Options for overcoming the downside of RPPA, which is the need to steadily validate new antibody batches, will be discussed. Finally, a debate on using RPPA to advance personalized medicine will conclude this article.

  7. Designing A Re-Configurable Fractional Fourier Transform Architecture Using Systolic Array

    Directory of Open Access Journals (Sweden)

    Anal Acharya

    2010-11-01

    Full Text Available FRFT (Fractional Fourier Transforms algorithm, which has been derived from DFT, computes the angular domains within the time and frequency domains. This algorithm is increasingly used in the field of signal filtering, quantum mechanics and optical physics. In this paper we develop an efficient, systolic, re-configurable architecture for a particular type of FRFT called MA-CDFRFT (Multi Angle Centered Discrete FRFT. The benefit of this particular type of FRFT is that it computes all the signal components within equally spaced angles. Systolic architecture is used for this computation as it has certain advantages over the other forms like simplicity, regularity, concurrency and computation intensive The resultant product so developed should meet the challenges of today's market like marketable and cheap along with meeting customer demands. This calls for the architecture to be re-configurable. Re-configurable computer consist of a standard processor and an array of re-configurable hardware. The main processor would control the behavior of the re-configurable hardware. The re-configurable hardware would then be tailored to perform a specific task, such as image processing or pattern matching applications, as if it was built to perform this task exclusively.

  8. The Baryon Acoustic Oscillation Broadband and Broad-beam Array: Design Overview and Sensitivity Forecasts

    CERN Document Server

    Pober, Jonathan C; DeBoer, David R; McDonald, Patrick; McQuinn, Matthew; Aguirre, James E; Ali, Zaki; Bradley, Richard F; Chang, Tzu-Ching; Morales, Miguel F

    2012-01-01

    This work describes a new instrument optimized for a detection of the neutral hydrogen 21cm power spectrum between redshifts of 0.5-1.5: the Baryon Acoustic Oscillation Broadband and Broad-beam (BAOBAB) Array. BAOBAB will build on the efforts of a first generation of 21cm experiments which are targeting a detection of the signal from the Epoch of Reionization at z ~ 10. At z ~ 1, the emission from neutral hydrogen in self-shielded overdense halos also presents an accessible signal, since the dominant, synchrotron foreground emission is considerably fainter than at redshift 10. The principle science driver for these observations are Baryon Acoustic Oscillations in the matter power spectrum which have the potential to act as a standard ruler and constrain the nature of dark energy. BAOBAB will fully correlate dual-polarization antenna tiles over the 600-900MHz band with a frequency resolution of 300 kHz and a system temperature of 50K. The number of antennas will grow in staged deployments, and reconfigurations...

  9. New Shortwave Array Spectroradiometer-Hemispheric (SAS-He): hyperspectral design and initial applications

    Science.gov (United States)

    Kassianov, Evgueni; Flynn, Connor; Barnard, James; Ermold, Brian; Berg, Larry

    2016-10-01

    Aerosol optical depth (AOD) derived from hyperspectral measurements can serve as an invaluable input for simultaneous retrievals of particle size distributions and major trace gases. The required hyperspectral measurements are provided by a new ground-based radiometer, the so-called Shortwave Array Spectroradiometer-Hemispheric (SAS-He), recently developed with support from the Department of Energy (DOE) Office Atmospheric Radiation Measurement (ARM) Program. The SAS-He has wide spectral coverage (350-1700nm) and high spectral resolution: about 2.4 nm and 6 nm within 350-1000 nm and 970-1700 nm spectral ranges, respectively. To illustrate an initial performance of the SAS-He, we take advantage of integrated dataset collected during the ARM-supported Two-Column Aerosol Project (TCAP) over the US coastal region (Cape Cod, Massachusetts). This dataset includes AODs derived using data from Aerosol Robotic Network (AERONET) sunphotometer and Multi-Filter Rotating Shadowband Radiometer (MFRSR). We demonstrate that, on average, the SAS-He AODs closely match the MFRSR and AERONET AODs in the ultraviolet and visible spectral ranges for this area with highly variable AOD. Also, we discuss corrections of SAS-He total optical depth for gas absorption in the near-infrared spectral range and their operational implementation

  10. Low concentration ratio solar array for low Earth orbit multi-100 kW application. Volume 1: Design, analysis and development tests

    Science.gov (United States)

    1983-01-01

    A preliminary design effort directed toward a low concentration ratio photovoltaic array system capable of delivering multihundred kilowatts (300 kW to 1000 kW range) in low earth orbit is described. The array system consists of two or more array modules each capable of delivering between 113 kW to 175 kW using silicon solar cells or gallium arsenide solar cells, respectively. The array module deployed area is 1320 square meters and consists of 4356 pyramidal concentrator elements. The module, when stowed in the Space Shuttle's payload bay, has a stowage volume of a cube with 3.24 meters on a side. The concentrator elements are sized for a geometric concentration ratio (GCR) of six with an aperture area of .25 sq. m. The structural analysis and design trades leading to the baseline design are discussed. It describes the configuration, as well as optical, thermal and electrical performance analyses that support the design and overall performance estimates for the array are described.

  11. Programmable logic controller performance enhancement by field programmable gate array based design.

    Science.gov (United States)

    Patel, Dhruv; Bhatt, Jignesh; Trivedi, Sanjay

    2015-01-01

    PLC, the core element of modern automation systems, due to serial execution, exhibits limitations like slow speed and poor scan time. Improved PLC design using FPGA has been proposed based on parallel execution mechanism for enhancement of performance and flexibility. Modelsim as simulation platform and VHDL used to translate, integrate and implement the logic circuit in FPGA. Xilinx's Spartan kit for implementation-testing and VB has been used for GUI development. Salient merits of the design include cost-effectiveness, miniaturization, user-friendliness, simplicity, along with lower power consumption, smaller scan time and higher speed. Various functionalities and applications like typical PLC and industrial alarm annunciator have been developed and successfully tested. Results of simulation, design and implementation have been reported.

  12. Design for strong absorption in a nanowire array tandem solar cell

    Science.gov (United States)

    Chen, Yang; Pistol, Mats-Erik; Anttu, Nicklas

    2016-08-01

    Semiconductor nanowires are a promising candidate for next-generation solar cells. However, the optical response of nanowires is, due to diffraction effects, complicated to optimize. Here, we optimize through optical modeling the absorption in a dual-junction nanowire-array solar cell in terms of the Shockley-Quessier detailed balance efficiency limit. We identify efficiency maxima that originate from resonant absorption of photons through the HE11 and the HE12 waveguide modes in the top cell. An efficiency limit above 40% is reached in the band gap optimized Al0.10Ga0.90As/In0.34Ga0.66As system when we allow for different diameter for the top and the bottom nanowire subcell. However, for experiments, equal diameter for the top and the bottom cell might be easier to realize. In this case, we find in our modeling a modest 1–2% drop in the efficiency limit. In the Ga0.51In0.49P/InP system, an efficiency limit of η = 37.3% could be reached. These efficiencies, which include reflection losses and sub-optimal absorption, are well above the 31.0% limit of a perfectly-absorbing, idealized single-junction bulk cell, and close to the 42.0% limit of the idealized dual-junction bulk cell. Our results offer guidance in the choice of materials and dimensions for nanowires with potential for high efficiency tandem solar cells.

  13. Design for strong absorption in a nanowire array tandem solar cell

    Science.gov (United States)

    Chen, Yang; Pistol, Mats-Erik; Anttu, Nicklas

    2016-01-01

    Semiconductor nanowires are a promising candidate for next-generation solar cells. However, the optical response of nanowires is, due to diffraction effects, complicated to optimize. Here, we optimize through optical modeling the absorption in a dual-junction nanowire-array solar cell in terms of the Shockley-Quessier detailed balance efficiency limit. We identify efficiency maxima that originate from resonant absorption of photons through the HE11 and the HE12 waveguide modes in the top cell. An efficiency limit above 40% is reached in the band gap optimized Al0.10Ga0.90As/In0.34Ga0.66As system when we allow for different diameter for the top and the bottom nanowire subcell. However, for experiments, equal diameter for the top and the bottom cell might be easier to realize. In this case, we find in our modeling a modest 1–2% drop in the efficiency limit. In the Ga0.51In0.49P/InP system, an efficiency limit of η = 37.3% could be reached. These efficiencies, which include reflection losses and sub-optimal absorption, are well above the 31.0% limit of a perfectly-absorbing, idealized single-junction bulk cell, and close to the 42.0% limit of the idealized dual-junction bulk cell. Our results offer guidance in the choice of materials and dimensions for nanowires with potential for high efficiency tandem solar cells. PMID:27574019

  14. Housing Arrays Following Disasters: Social Vulnerability Considerations in Designing Transitional Communities

    Science.gov (United States)

    Spokane, Arnold R.; Mori, Yoko; Martinez, Frank

    2013-01-01

    Displacement and dislocation from homes disrupt fundamental social processes necessary for optimal community functioning. Neighborhood and community social capital, collective efficacy and place attachment are social processes that may be compromised following disaster, conflict, and upheaval. A collaborative approach to the preplanning, design,…

  15. Design and Analysis of Printed Reflectarrays with Irregularly Positioned Array Elements

    DEFF Research Database (Denmark)

    Zhou, Min; Sørensen, Stig; Meincke, Peter

    2012-01-01

    and an irregular layout, generating the same contoured beam pattern to cover an European region with cross-polar and sidelobe suppression have been designed. Simulations show that better performance in the cross-polar radiation can be obtained by using the irregular reflectarray, thus demonstrating the potential...

  16. Design, fabrication and testing of 17um pitch 640x480 uncooled infrared focal plane array detector

    Science.gov (United States)

    Jiang, Lijun; Liu, Haitao; Chi, Jiguang; Qian, Liangshan; Pan, Feng; Liu, Xiang

    2015-10-01

    Uncooled infrared focal plane array (UIRFPA) detectors are widely used in industrial thermography cameras, night vision goggles, thermal weapon sights, as well as automotive night vision systems. To meet the market requirement for smaller pixel pitch and higher resolution, we have developed a 17um pitch 640x480 UIRFPA detector. The detector is based on amorphous silicon (a-Si) microbolometer technology, the readout integrated circuit (ROIC) is designed and manufactured with 0.35um standard CMOS technology on 8 inch wafer, the microbolometer is fabricated monolithically on the ROIC using an unique surface micromachining process developed inside the company, the fabricated detector is vacuum packaged with hermetic metal package and tested. In this paper we present the design, fabrication and testing of the 17um 640x480 detector. The design trade-off of the detector ROIC and pixel micro-bridge structure will be discussed, by comparison the calculation and simulation to the testing results. The novel surface micromachining process using silicon sacrificial layer will be presented, which is more compatible with the CMOS process than the traditional process with polyimide sacrificial layer, and resulted in good processing stability and high fabrication yield. The performance of the detector is tested, with temperature equivalent temperature difference (NETD) less than 60mK at F/1 aperture, operability better than 99.5%. The results demonstrate that the detector can meet the requirements of most thermography and night vision applications.

  17. DNA Copy Number Aberrations in Breast Cancer by Array Comparative Genomic Hybridization

    Institute of Scientific and Technical Information of China (English)

    Jian Li; Kai Wang; Shengting Li; Vera Timmermans-Wielenga; Fritz Rank; Carsten Wiuf; Xiuqing Zhang; Huanming Yang; Lars Bolund

    2009-01-01

    Array comparative genomic hybridization (CGH) has been popularly used for an-alyzing DNA copy number variations in diseases like cancer. In this study, we investigated 82 sporadic samples from 49 breast cancer patients using 1-Mb reso-lution bacterial artificial chromosome CGH arrays. A number of highly frequent genomic aberrations were discovered, which may act as "drivers" of tumor pro-gression. Meanwhile, the genomic profiles of four "normal" breast tissue samples taken at least 2 cm away from the primary tumor sites were also found to have some genomic aberrations that recurred with high frequency in the primary tu-mors, which may have important implications for clinical therapy. Additionally, we performed class comparison and class prediction for various clinicopathological pa-rameters, and a list of characteristic genomic aberrations associated with different clinicopathological phenotypes was compiled. Our study provides clues for further investigations of the underlying mechanisms of breast carcinogenesis.

  18. Somatic mosaicism detected by exon-targeted, high-resolution aCGH in 10 362 consecutive cases

    Science.gov (United States)

    Pham, Justin; Shaw, Chad; Pursley, Amber; Hixson, Patricia; Sampath, Srirangan; Roney, Erin; Gambin, Tomasz; Kang, Sung-Hae L; Bi, Weimin; Lalani, Seema; Bacino, Carlos; Lupski, James R; Stankiewicz, Pawel; Patel, Ankita; Cheung, Sau-Wai

    2014-01-01

    Somatic chromosomal mosaicism arising from post-zygotic errors is known to cause several well-defined genetic syndromes as well as contribute to phenotypic variation in diseases. However, somatic mosaicism is often under-diagnosed due to challenges in detection. We evaluated 10 362 patients with a custom-designed, exon-targeted whole-genome oligonucleotide array and detected somatic mosaicism in a total of 57 cases (0.55%). The mosaicism was characterized and confirmed by fluorescence in situ hybridization (FISH) and/or chromosome analysis. Different categories of abnormal cell lines were detected: (1) aneuploidy, including sex chromosome abnormalities and isochromosomes (22 cases), (2) ring or marker chromosomes (12 cases), (3) single deletion/duplication copy number variations (CNVs) (11 cases), (4) multiple deletion/duplication CNVs (5 cases), (5) exonic CNVs (4 cases), and (6) unbalanced translocations (3 cases). Levels of mosaicism calculated based on the array data were in good concordance with those observed by FISH (10–93%). Of the 14 cases evaluated concurrently by chromosome analysis, mosaicism was detected solely by the array in 4 cases (29%). In summary, our exon-targeted array further expands the diagnostic capability of high-resolution array comparative genomic hybridization in detecting mosaicism for cytogenetic abnormalities as well as small CNVs in disease-causing genes. PMID:24398791

  19. Somatic mosaicism detected by exon-targeted, high-resolution aCGH in 10,362 consecutive cases.

    Science.gov (United States)

    Pham, Justin; Shaw, Chad; Pursley, Amber; Hixson, Patricia; Sampath, Srirangan; Roney, Erin; Gambin, Tomasz; Kang, Sung-Hae L; Bi, Weimin; Lalani, Seema; Bacino, Carlos; Lupski, James R; Stankiewicz, Pawel; Patel, Ankita; Cheung, Sau-Wai

    2014-08-01

    Somatic chromosomal mosaicism arising from post-zygotic errors is known to cause several well-defined genetic syndromes as well as contribute to phenotypic variation in diseases. However, somatic mosaicism is often under-diagnosed due to challenges in detection. We evaluated 10,362 patients with a custom-designed, exon-targeted whole-genome oligonucleotide array and detected somatic mosaicism in a total of 57 cases (0.55%). The mosaicism was characterized and confirmed by fluorescence in situ hybridization (FISH) and/or chromosome analysis. Different categories of abnormal cell lines were detected: (1) aneuploidy, including sex chromosome abnormalities and isochromosomes (22 cases), (2) ring or marker chromosomes (12 cases), (3) single deletion/duplication copy number variations (CNVs) (11 cases), (4) multiple deletion/duplication CNVs (5 cases), (5) exonic CNVs (4 cases), and (6) unbalanced translocations (3 cases). Levels of mosaicism calculated based on the array data were in good concordance with those observed by FISH (10-93%). Of the 14 cases evaluated concurrently by chromosome analysis, mosaicism was detected solely by the array in 4 cases (29%). In summary, our exon-targeted array further expands the diagnostic capability of high-resolution array comparative genomic hybridization in detecting mosaicism for cytogenetic abnormalities as well as small CNVs in disease-causing genes.

  20. Validation and implementation of array comparative genomic hybridisation as a first line test in place of postnatal karyotyping for genome imbalance

    Directory of Open Access Journals (Sweden)

    Docherty Zoe

    2010-04-01

    Full Text Available Abstract Background Several studies have demonstrated that array comparative genomic hybridisation (CGH for genome-wide imbalance provides a substantial increase in diagnostic yield for patients traditionally referred for karyotyping by G-banded chromosome analysis. The purpose of this study was to demonstrate the feasibility of and strategies for, the use of array CGH in place of karyotyping for genome imbalance, and to report on the results of the implementation of this approach. Results Following a validation period, an oligoarray platform was chosen. In order to minimise costs and increase efficiency, a patient/patient hybridisation strategy was used, and analysis criteria were set to optimise detection of pathogenic imbalance. A customised database application with direct links to a number of online resources was developed to allow efficient management and tracking of patient samples and facilitate interpretation of results. Following introduction into our routine diagnostic service for patients with suspected genome imbalance, array CGH as a follow-on test for patients with normal karyotypes (n = 1245 and as a first-line test (n = 1169 gave imbalance detection rates of 26% and 22% respectively (excluding common, benign variants. At least 89% of the abnormalities detected by first line testing would not have been detected by standard karyotype analysis. The average reporting time for first-line tests was 25 days from receipt of sample. Conclusions Array CGH can be used in a diagnostic service setting in place of G-banded chromosome analysis, providing a more comprehensive and objective test for patients with suspected genome imbalance. The increase in consumable costs can be minimised by employing appropriate hybridisation strategies; the use of robotics and a customised database application to process multiple samples reduces staffing costs and streamlines analysis, interpretation and reporting of results. Array CGH provides a

  1. Design, Prototyping and Measurement of a Cascaded 6-GHz Frequency Selective Surface Array

    Directory of Open Access Journals (Sweden)

    Marcelo Bender Perotoni

    2016-04-01

    Full Text Available The design, prototyping, and free-space measurement of a 6-GHz Frequency Selective Surface filter is presented. The prototyping resolution of a large (A4 sheet size Frequency Selective Surface with small loops as elements is checked, as well as the correlation with measurements performed with a 3-D full-wave solver. The test also involved the effect of cascading two different Frequency Selective Surfaces with a viewpoint towards a narrower frequency range, which provided good results.

  2. Response surface methodology and process optimization of sustained release pellets using Taguchi orthogonal array design and central composite design

    Directory of Open Access Journals (Sweden)

    Gurinder Singh

    2012-01-01

    Full Text Available Furosemide is a powerful diuretic and antihypertensive drug which has low bioavailability due to hepatic first pass metabolism and has a short half-life of 2 hours. To overcome the above drawback, the present study was carried out to formulate and evaluate sustained release (SR pellets of furosemide for oral administration prepared by extrusion/spheronization. Drug Coat L-100 was used within the pellet core along with microcrystalline cellulose as the diluent and concentration of selected binder was optimized to be 1.2%. The formulation was prepared with drug to polymer ratio 1:3. It was optimized using Design of Experiments by employing a 3 2 central composite design that was used to systematically optimize the process parameters combined with response surface methodology. Dissolution studies were carried out with USP apparatus Type I (basket type in both simulated gastric and intestinal pH. The statistical technique, i.e., the two-tailed paired t test and one-way ANOVA of in vitro data has proposed that there was very significant ( P≤0.05 difference in dissolution profile of furosemide SR pellets when compared with pure drug and commercial product. Validation of the process optimization study indicated an extremely high degree of prognostic ability. The study effectively undertook the development of optimized process parameters of pelletization of furosemide pellets with tremendous SR characteristics.

  3. Response surface methodology and process optimization of sustained release pellets using Taguchi orthogonal array design and central composite design.

    Science.gov (United States)

    Singh, Gurinder; Pai, Roopa S; Devi, V Kusum

    2012-01-01

    Furosemide is a powerful diuretic and antihypertensive drug which has low bioavailability due to hepatic first pass metabolism and has a short half-life of 2 hours. To overcome the above drawback, the present study was carried out to formulate and evaluate sustained release (SR) pellets of furosemide for oral administration prepared by extrusion/spheronization. Drug Coat L-100 was used within the pellet core along with microcrystalline cellulose as the diluent and concentration of selected binder was optimized to be 1.2%. The formulation was prepared with drug to polymer ratio 1:3. It was optimized using Design of Experiments by employing a 3(2) central composite design that was used to systematically optimize the process parameters combined with response surface methodology. Dissolution studies were carried out with USP apparatus Type I (basket type) in both simulated gastric and intestinal pH. The statistical technique, i.e., the two-tailed paired t test and one-way ANOVA of in vitro data has proposed that there was very significant (P≤0.05) difference in dissolution profile of furosemide SR pellets when compared with pure drug and commercial product. Validation of the process optimization study indicated an extremely high degree of prognostic ability. The study effectively undertook the development of optimized process parameters of pelletization of furosemide pellets with tremendous SR characteristics.

  4. A 34K SNP genotyping array for Populus trichocarpa: design, application to the study of natural populations and transferability to other Populus species

    Energy Technology Data Exchange (ETDEWEB)

    Geraldes, Armando [University of British Columbia, Vancouver; Hannemann, Jan [University of Victoria, Canada; Grassa, Chris [University of British Columbia, Vancouver; Farzaneh, Nima [University of British Columbia, Vancouver; Porth, Ilga [University of British Columbia, Vancouver; McKown, Athena [University of British Columbia, Vancouver; Skyba, Oleksandr [University of British Columbia, Vancouver; Li, Eryang [University of British Columbia, Vancouver; Mike, Fujita [University of British Columbia, Vancouver; Friedmann, Michael [University of British Columbia, Vancouver; Wasteneys, Geoffrey [University of British Columbia, Vancouver; Guy, Robert [University of British Columbia, Vancouver; El-Kassaby, Yousry [University of British Columbia, Vancouver; Mansfield, Shawn [University of British Columbia, Vancouver; Cronk, Quentin [University of British Columbia, Vancouver; Ehlting, Juergen [University of Victoria, Canada; Douglas, Carl [University of British Columbia, Vancouver; DiFazio, Stephen P [West Virginia University, Morgantown; Slavov, Gancho [West Virginia University, Morgantown; Ranjan, Priya [ORNL; Muchero, Wellington [ORNL; Gunter, Lee E [ORNL; Wymore, Ann [ORNL; Tuskan, Gerald A [ORNL; Martin, Joel [U.S. Department of Energy, Joint Genome Institute; Schackwitz, Wendy [U.S. Department of Energy, Joint Genome Institute; Pennacchio, Christa [U.S. Department of Energy, Joint Genome Institute; Rokhsar, Daniel [U.S. Department of Energy, Joint Genome Institute

    2013-01-01

    Genetic mapping of quantitative traits requires genotypic data for large numbers of markers in many individuals. Despite the declining costs of genotyping by sequencing, for most studies, the use of large SNP genotyping arrays still offers the most cost-effective solution for large-scale targeted genotyping. Here we report on the design and performance of a SNP genotyping array for Populus trichocarpa (black cottonwood). This genotyping array was designed with SNPs pre-ascertained in 34 wild accessions covering most of the species range. Due to the rapid decay of linkage disequilibrium in P. trichocarpa we adopted a candidate gene approach to the array design that resulted in the selection of 34,131 SNPs, the majority of which are located in, or within 2 kb, of 3,543 candidate genes. A subset of the SNPs (539) was selected based on patterns of variation among the SNP discovery accessions. We show that more than 95% of the loci produce high quality genotypes and that the genotyping error rate for these is likely below 2%, indicating that high-quality data are generated with this array. We demonstrate that even among small numbers of samples (n=10) from local populations over 84% of loci are polymorphic. We also tested the applicability of the array to other species in the genus and found that due to ascertainment bias the number of polymorphic loci decreases rapidly with genetic distance, with the largest numbers detected in other species in section Tacamahaca (P. balsamifera and P. angustifolia). Finally, we provide evidence for the utility of the array for intraspecific studies of genetic differentiation and for species assignment and the detection of natural hybrids.

  5. Transition-edge sensor pixel parameter design of the microcalorimeter array for the x-ray integral field unit on Athena

    Science.gov (United States)

    Smith, S. J.; Adams, J. S.; Bandler, S. R.; Betancourt-Martinez, G. L.; Chervenak, J. A.; Chiao, M. P.; Eckart, M. E.; Finkbeiner, F. M.; Kelley, R. L.; Kilbourne, C. A.; Miniussi, A. R.; Porter, F. S.; Sadleir, J. E.; Sakai, K.; Wakeham, N. A.; Wassell, E. J.; Yoon, W.; Bennett, D. A.; Doriese, W. B.; Fowler, J. W.; Hilton, G. C.; Morgan, K. M.; Pappas, C. G.; Reintsema, C. N.; Swetz, D. S.; Ullom, J. N.; Irwin, K. D.; Akamatsu, H.; Gottardi, L.; den Hartog, R.; Jackson, B. D.; van der Kuur, J.; Barret, D.; Peille, P.

    2016-07-01

    The focal plane of the X-ray integral field unit (X-IFU) for ESA's Athena X-ray observatory will consist of 4000 transition edge sensor (TES) x-ray microcalorimeters optimized for the energy range of 0.2 to 12 keV. The instrument will provide unprecedented spectral resolution of 2.5 eV at energies of up to 7 keV and will accommodate photon fluxes of 1 mCrab (90 cps) for point source observations. The baseline configuration is a uniform large pixel array (LPA) of 4.28" pixels that is read out using frequency domain multiplexing (FDM). However, an alternative configuration under study incorporates an 18 × 18 small pixel array (SPA) of 2" pixels in the central 36" region. This hybrid array configuration could be designed to accommodate higher fluxes of up to 10 mCrab (900 cps) or alternately for improved spectral performance (report on the TES pixel designs that are being optimized to meet these proposed LPA and SPA configurations. In particular we describe details of how important TES parameters are chosen to meet the specific mission criteria such as energy resolution, count-rate and quantum efficiency, and highlight performance trade-offs between designs. The basis of the pixel parameter selection is discussed in the context of existing TES arrays that are being developed for solar and x-ray astronomy applications. We describe the latest results on DC biased diagnostic arrays as well as large format kilo-pixel arrays and discuss the technical challenges associated with integrating different array types on to a single detector die.

  6. High-Resolution Mapping of Structural Mutations in Prostate Cancer with Single Nucleotide Polymorphism Arrays

    Science.gov (United States)

    2006-11-01

    recurrent phyllodes tumor and fibroa- denoma of breast using single nucleotide polymorphism arrays. Breast Cancer Res Treat 2006; 97:301–309. 21...neutral LOH). Interestingly, copy-neutral LOH, which is undetectable by conventional CGH methods, represents up to 80% of LOH events in some tumor ...the notion that LOH represents a key mechanism for tumor suppressor inactivation. Indeed, nearly all common tumor suppressor genes occur in regions

  7. Design of Experiments: Useful Orthogonal Arrays for Number of Experiments from 4 to 16

    Directory of Open Access Journals (Sweden)

    Lorentz Jäntschi

    2007-12-01

    Full Text Available A methodology for the design of an experiment is proposed in order to find asmany schemes as possible with the maximum number of factors with different levels for thesmallest number of experimental runs. An algorithm was developed and homemadesoftware was implemented. The abilities in generation of the largest groups of orthogonalarrays were analyzed for experimental runs of 4, 6, 8, 9, 10, 12, 14, 15, and 16. The resultsshow that the proposed method permits the construction of the largest groups of orthogonalarrays with the maximum number of factors.

  8. Amplitude Tapers for Planar Arrays Using the McClellan Transformation: Concepts and Preliminary Design Experiments

    Science.gov (United States)

    2010-04-29

    transformation: a phase-only prototype transforms to a two-dimensional taper that lacks the phase-only property. A straightforward IEEE Xplore subject search...A 2-D FIR filter structure derived from the Chebyshev recursion,” IEEE Trans. Circuits and Systems, vol. 24, no. 7, pp. 372–378, July 1977. [Online...transformations for two-dimensional digital filtering—Part I: Design,” IEEE Trans. Circuits and Systems, 3It is odd to associate the term “recursion” with FIR

  9. Design and scheduling for periodic concurrent error detection and recovery in processor arrays

    Science.gov (United States)

    Wang, Yi-Min; Chung, Pi-Yu; Fuchs, W. Kent

    1992-01-01

    Periodic application of time-redundant error checking provides the trade-off between error detection latency and performance degradation. The goal is to achieve high error coverage while satisfying performance requirements. We derive the optimal scheduling of checking patterns in order to uniformly distribute the available checking capability and maximize the error coverage. Synchronous buffering designs using data forwarding and dynamic reconfiguration are described. Efficient single-cycle diagnosis is implemented by error pattern analysis and direct-mapped recovery cache. A rollback recovery scheme using start-up control for local recovery is also presented.

  10. Design, fabrication and characterization of an arrayable all-polymer microfluidic valve employing highly magnetic rare-earth composite polymer

    Science.gov (United States)

    Rahbar, Mona; Shannon, Lesley; Gray, Bonnie L.

    2016-05-01

    We present a new magnetically actuated microfluidic valve that employs a highly magnetic composite polymer (M-CP) containing rare-earth hard-magnetic powder for its actuating element and for its valve seat. The M-CP offers much higher magnetization compared to the soft-magnetic, ferrite-based composite polymers typically used in microfluidic applications. Each valve consists of a permanently magnetized M-CP flap and valve seat mounted on a microfluidic channel system fabricated in poly(dimethylsiloxane) (PDMS). Each valve is actuated under a relatively small external magnetic field of 80 mT provided by a small permanent magnet mounted on a miniature linear actuator. The performance of the valve with different flap thicknesses is characterized. In addition, the effect of the magnetic valve seat on the valve’s performance is also characterized. It is experimentally shown that a valve with a 2.3 mm flap thickness, actuated under an 80 mT magnetic field, is capable of completely blocking liquid flow at a flow rate of 1 ml min-1 for pressures up to 9.65 kPa in microfluidic channels 200 μm wide and 200 μm deep. The valve can also be fabricated into an array for flow switching between multiple microfluidic channels under continuous flow conditions. The performance of arrays of valves for flow routing is demonstrated for flow rates up to 5 ml min-1 with larger microfluidic channels of up to 1 mm wide and 500 μm deep. The design of the valves is compatible with other commonly used polymeric microfluidic components, as well as other components that use the same novel permanently magnetic composite polymer, such as our previously reported cilia-based mixing devices.

  11. Genome-wide screening for genetic alterations in esophageal cancer by aCGH identifies 11q13 amplification oncogenes associated with nodal metastasis.

    Directory of Open Access Journals (Sweden)

    Jianming Ying

    Full Text Available BACKGROUND: Esophageal squamous cell carcinoma (ESCC is highly prevalent in China and other Asian countries, as a major cause of cancer-related mortality. ESCC displays complex chromosomal abnormalities, including multiple structural and numerical aberrations. Chromosomal abnormalities, such as recurrent amplifications and homozygous deletions, directly contribute to tumorigenesis through altering the expression of key oncogenes and tumor suppressor genes. METHODOLOGY/PRINCIPLE FINDINGS: To understand the role of genetic alterations in ESCC pathogenesis and identify critical amplification/deletion targets, we performed genome-wide 1-Mb array comparative genomic hybridization (aCGH analysis for 10 commonly used ESCC cell lines. Recurrent chromosomal gains were frequently detected on 3q26-27, 5p15-14, 8p12, 8p22-24, 11q13, 13q21-31, 18p11 and 20q11-13, with frequent losses also found on 8p23-22, 11q22, 14q32 and 18q11-23. Gain of 11q13.3-13.4 was the most frequent alteration in ESCC. Within this region, CCND1 oncogene was identified with high level of amplification and overexpression in ESCC, while FGF19 and SHANK2 was also remarkably over-expressed. Moreover, a high concordance (91.5% of gene amplification and protein overexpression of CCND1 was observed in primary ESCC tumors. CCND1 amplification/overexpression was also significantly correlated with the lymph node metastasis of ESCC. CONCLUSION: These findings suggest that genomic gain of 11q13 is the major mechanism contributing to the amplification. Novel oncogenes identified within the 11q13 amplicon including FGF19 and SHANK2 may play important roles in ESCC tumorigenesis.

  12. Design of multichord Hα detector arrays for the U-3M torsatron and identification of rotating plasma perturbations

    Science.gov (United States)

    Dreval, M. B.; Shapoval, A. M.; Ozherelyev, F. I.; Makhov, M. M.

    2016-07-01

    An Hα camera has been designed and installed in the U-3M torsatron for spatially and temporally resolved measurements. This device provides fast measurements of the emission brightness profile in the noisy environment of the radio frequency (RF) heated plasma. Unusual topology of diagnostics and the data acquisition system are applied. All the system components, including digitizers, are assembled in a single unit. It allows the suppression of a low-frequency electromagnetic interference by eliminating the ground loops. And the suppression of RF noises is achieved by eliminating the signal interface cables and digital interface cables in the design. The Wi-Fi interface is used to prevent a ground loop in the data transfer stage. The achieved sensitivity of our diagnostics is high enough for measuring the Hα emission from the low-density (ne ≈ (1-2)ṡ1010 cm-3) plasma with a temporal resolution of about 20 μs in the noisy environment. Different types of Hα emission fluctuations within the frequency range of 1-5 kHz and poloidal mode numbers m = 0 and m = 5 have been observed in U-3M. A simple technique of the line-of-sight data analysis, based on the U-3M magnetic surface asymmetry, is proposed and used for the spatial localization of the rotating mode and for the determination of mode numbers and its poloidal rotation direction using a single Hα array.

  13. Design and Field Programmable Gate Array Implementation of Basic Building Blocks for Power-Efficient Baugh-Wooley Multipliers

    Directory of Open Access Journals (Sweden)

    Muhammad H. Rais

    2010-01-01

    Full Text Available Problem statement: As growing demands on portable computing and communication systems, the power-efficient multipliers play an important role. In these multipliers basic multiplication follows the Baugh-Wooley algorithms and can easily be implemented using Field Programmable Gate Array (FPGA devices because the development cost for Application Specific Integrated Circuits (ASICs are high. These algorithms should be verified and optimized before implementation. Approach: This study presented the design and implementation of basic building blocks used in power-efficient Baugh-Wooley multipliers using FPGA Spartan-3AN device. The implementation of power-efficient Baugh-Wooley multipliers is done using Very High speed integrated circuit Hardware Description Language (VHDL. Results: The design and implementation of basic building blocks of power-efficient Baugh-Wooley multipliers showed reasonable FPGA resource utilization, which is an indication that rest of the available resources could be utilized for other embedded resources. Conclusion: The Spartan-3AN FPGA device could be used at this stage of basic building blocks reasonably.

  14. DESIGN AND IMPLEMENTATION OF GLOBAL POSITIONING SYSTEM RECEIVER IN FIELD PROGRAMMABLE GATE ARRAY WITH SHORT MESSAGE SERVICE

    Directory of Open Access Journals (Sweden)

    Govindaraju Kavya

    2014-01-01

    Full Text Available In recent years, survival rate from myocardial infarction and bundle branch block has been increased due to the advancements in medical field. Continuous monitoring and location management of these patients becomes an essential task. Hence this study aims in design and development of GPS in a Field Programmable Gate Array (FPGA and interfaced with a GSM modem to transmit the location of a civilian or a patient to the mobile of the caretaker .The digital blocks like code acquisition, carrier tracking, code tracking and data processing are modeled in VHDL and validation of the blocks were done using MODELSIM simulator. The analog front end of the GPS receiver have been designed and integrated with Altera DE1 FPGA board which has software defined digital baseband GPS receiver. Quartus II software is used to integrate the analog front end and digital back end of the GPS receiver. The GPS output from the FPGA is given to the GSM that transmits the location to a mobile. The proposed implementation has the advantage that various blocks of the processor can be reconfigured to support multiple signal processing tasks and also can be retargeted to any family of FPGA device.

  15. Design of thin-film filters for resolution improvements in filter-array based spectrometers using DSP

    Science.gov (United States)

    Lee, Woong-Bi; Kim, Cheolsun; Ju, Gun Wu; Lee, Yong Tak; Lee, Heung-No

    2016-05-01

    Miniature spectrometers have been widely developed in various academic and industrial applications such as bio-medical, chemical and environmental engineering. As a family of spectrometers, optical filter-array based spectrometers fabricated using CMOS or Nano technology provide miniaturization, superior portability and cost effectiveness. In filterarray based spectrometers, the resolution which represents the ability how closely resolve two neighboring spectra, depends on the number of filters and the characteristics of the transmission functions (TFs) of the filters. In practice, due to the small-size and low-cost fabrication, the number of filters is limited and the shape of the TF of each filter is nonideal. As a development of modern digital signal processing (DSP), the spectrometers are equipped with DSP algorithms not only to alleviate distortions due to unexpected noise or interferences among filters but also reconstruct the original signal spectrum. For a high-resolution spectrum reconstruction by the DSP, the TFs of the filters need to be sufficiently uncorrelated with each other. In this paper, we present a design of optical thin-film filters which have the uncorrelated TFs. Each filter consists of multiple layers of high- and low-refractive index materials deposited on a substrate. The proposed design helps the DSP algorithm to improve resolution with a small number of filters. We demonstrate that a resolution of 5 nm within a range from 500 nm to 1100 nm can be achieved with only 64 filters.

  16. Compact self-grounded Bow-Tie antenna design for an UWB phased-array hyperthermia applicator.

    Science.gov (United States)

    Takook, Pegah; Persson, Mikael; Gellermann, Johanna; Trefná, Hana Dobšíček

    2017-01-08

    Using UWB hyperthermia systems has the potential to improve the heat delivery to deep seated tumours. In this paper, we present a novel self-grounded Bow-Tie antenna design which is to serve as the basis element in a phased-array applicator. The UWB operation in the frequency range of 0.43-1 GHz is achieved by immersing the antenna in a water bolus. The radiation characteristics are improved by appropriate shaping the water bolus and by inclusion of dielectric layers on the top of the radiating arms of the antenna. In order to find the most appropriate design, we use a combination of performance indicators representing the most important attributes of the antenna. These are the UWB impedance matching, the transmission capability and the effective field size. The antenna was constructed and experimentally validated on muscle-like phantom. The measured reflection and transmission coefficients as well as radiation characteristics are in excellent agreement with the simulated results. MR image acquisitions with antenna located inside MR bore indicate a negligible distortion of the images by the antenna itself, which indicates MR compatibility.

  17. Evolving serodiagnostics by rationally designed peptide arrays: the Burkholderia paradigm in Cystic Fibrosis

    Science.gov (United States)

    Peri, Claudio; Gori, Alessandro; Gagni, Paola; Sola, Laura; Girelli, Daniela; Sottotetti, Samantha; Cariani, Lisa; Chiari, Marcella; Cretich, Marina; Colombo, Giorgio

    2016-09-01

    Efficient diagnosis of emerging and novel bacterial infections is fundamental to guide decisions on therapeutic treatments. Here, we engineered a novel rational strategy to design peptide microarray platforms, which combines structural and genomic analyses to predict the binding interfaces between diverse protein antigens and antibodies against Burkholderia cepacia complex infections present in the sera of Cystic Fibrosis (CF) patients. The predicted binding interfaces on the antigens are synthesized in the form of isolated peptides and chemically optimized for controlled orientation on the surface. Our platform displays multiple Burkholderia-related epitopes and is shown to diagnose infected individuals even in presence of superinfections caused by other prevalent CF pathogens, with limited cost and time requirements. Moreover, our data point out that the specific patterns determined by combined probe responses might provide a characterization of Burkholderia infections even at the subtype level (genomovars). The method is general and immediately applicable to other bacteria.

  18. A new method for the design of slot antenna arrays: Theory and experiment

    KAUST Repository

    Clauzier, Sebastien

    2016-04-10

    The present paper proposes and validates a new general design methodology that can be used to automatically find proper positions and orientations of waveguide-based radiating slots capable of realizing any given radiation beam profile. The new technique combines basic radiation theory and waveguide propagation theory in a novel analytical model that allows the prediction of the radiation characteristics of generic slots without the need to perform full-wave numerical solution. The analytical model is then used to implement a low-cost objective function within a global optimization scheme (here genetic algorithm.) The algorithm is then deployed to find optimum positions and orientations of clusters of radiating slots cut into the waveguide surface such that any desired beam pattern can be obtained. The method is verified using both full-wave numerical solution and experiment.

  19. Optimal Design of MPPT Controllers for Grid Connected Photovoltaic Array System

    Science.gov (United States)

    Ebrahim, M. A.; AbdelHadi, H. A.; Mahmoud, H. M.; Saied, E. M.; Salama, M. M.

    2016-10-01

    Integrating photovoltaic (PV) plants into electric power system exhibits challenges to power system dynamic performance. These challenges stem primarily from the natural characteristics of PV plants, which differ in some respects from the conventional plants. The most significant challenge is how to extract and regulate the maximum power from the sun. This paper presents the optimal design for the most commonly used Maximum Power Point Tracking (MPPT) techniques based on Proportional Integral tuned by Particle Swarm Optimization (PI-PSO). These suggested techniques are, (1) the incremental conductance, (2) perturb and observe, (3) fractional short circuit current and (4) fractional open circuit voltage techniques. This research work provides a comprehensive comparative study with the energy availability ratio from photovoltaic panels. The simulation results proved that the proposed controllers have an impressive tracking response. The system dynamic performance improved greatly using the proposed controllers.

  20. Design of a muon tomography system with a plastic scintillator and wavelength-shifting fiber arrays

    Science.gov (United States)

    Jo, Woo Jin; Kim, Hyun-Il; An, Su Jung; Lee, Chae Young; Baek, Cheol-Ha; Chung, Yong Hyun

    2013-12-01

    Recently, monitoring nuclear materials to avoid nuclear terrorism has become an important area of national security. It can be difficult to detect gamma rays from nuclear material because they are easily shielded by shielding material. Muon tomography using multiple -Coulomb scattering derived from muons can be utilized to detect special nuclear materials (SNMs) such as uranium-235 and plutonium-239. We designed a muon tomography system composed of four detector modules. The incident and scattered muon tracks can be calculated by two top and two bottom detectors, respectively. 3D tomographic images are obtained by extracting the crossing points of muon tracks with a point-of-closest-approach algorithm. The purpose of this study was to optimize the muon tomography system using Monte Carlo simulation code. The effects of the geometric parameters of the muon tomography system on material Z-discrimination capability were simulated and evaluated.

  1. Solar array deployment mechanism

    Science.gov (United States)

    Calassa, Mark C.; Kackley, Russell

    1995-05-01

    This paper describes a Solar Array Deployment Mechanism (SADM) used to deploy a rigid solar array panel on a commercial spacecraft. The application required a deployment mechanism design that was not only lightweight, but also could be produced and installed at the lowest possible cost. This paper covers design, test, and analysis of a mechanism that meets these requirements.

  2. Design and Implementation of Co-Array Fortran Compiler Based on Software Shared Memory%基于软件共享存储的Co-Array Fortran编译器实现

    Institute of Scientific and Technical Information of China (English)

    黄春

    2012-01-01

    Co-Array Fortran (CAF) has become part of Fortran Programming Language Standard,and has been widely accepted in scientific computing community. The paper presented the design and implementation of a CAF Compiler based on software shared memory. Several techniques were presented to improve the performance of CAF programs,including Co-array data communication by direct array assignment, Data Padding for raising locality and reducing false share. The benchmark testing shows that the performance of CAF programs is similar to that of MPI programs, with our CAF compiler.%Co-Array Fortran(CAF)已经成为Fortran语言标准的一部分,在科学计算领域逐渐被接受.基于软件共享存储实现了一个CAF编译器,其通过直接的数组赋值实现Co-array数据通信,利用数据垫塞技术提高数据局部性,减少伪共享,优化CAF程序性能.典型科学计算程序测试表明,CAF能够获得和MPI相当的性能.

  3. Single Event Analysis and Fault Injection Techniques Targeting Complex Designs Implemented in Xilinx-Virtex Family Field Programmable Gate Array (FPGA) Devices

    Science.gov (United States)

    Berg, Melanie D.; LaBel, Kenneth; Kim, Hak

    2014-01-01

    An informative session regarding SRAM FPGA basics. Presenting a framework for fault injection techniques applied to Xilinx Field Programmable Gate Arrays (FPGAs). Introduce an overlooked time component that illustrates fault injection is impractical for most real designs as a stand-alone characterization tool. Demonstrate procedures that benefit from fault injection error analysis.

  4. Report: Optimization study of the preparation factors for argan oil microcapsule based on hybrid-level orthogonal array design via SPSS modeling.

    Science.gov (United States)

    Zhao, Xi; Wu, Xiaoli; Zhou, Hui; Jiang, Tao; Chen, Chun; Liu, Mingshi; Jin, Yuanbao; Yang, Dongsheng

    2014-11-01

    To optimize the preparation factors for argan oil microcapsule using complex coacervation of chitosan cross-linked with gelatin based on hybrid-level orthogonal array design via SPSS modeling. Eight relatively significant factors were firstly investigated and selected as calculative factors for the orthogonal array design from the total of ten factors effecting the preparation of argan oil microcapsule by utilizing the single factor variable method. The modeling of hybrid-level orthogonal array design was built in these eight factors with the relevant levels (9, 9, 9, 9, 7, 6, 2 and 2 respectively). The preparation factors for argan oil microcapsule were investigated and optimized according to the results of hybrid-level orthogonal array design. The priorities order and relevant optimum levels of preparation factors standard to base on the percentage of microcapsule with the diameter of 30~40 μm via SPSS. Experimental data showed that the optimum factors were controlling the chitosan/gelatin ratio, the systemic concentration and the core/shell ratio at 1:2, 1.5% and 1:7 respectively, presetting complex coacervation pH at 6.4, setting cross-linking time and complex coacervation at 75 min and 30 min, using the glucose-delta lactone as the type of cross-linking agent, and selecting chitosan with the molecular weight of 2000~3000.

  5. 阵列信号处理实验平台设计%Design on Experimental Platform for Array Signal Processing

    Institute of Scientific and Technical Information of China (English)

    杨涛; 朱闪闪; 刘玉佼

    2015-01-01

    本文针对一维线阵和二维面阵的阵列信号处理算法研究,设计了一种发射阵列和接收阵列上下交错排布的二维稀疏超声相控阵列信号处理实验平台,并给出了实验平台的硬件总体功能设计、发射和接收电路设计及软件架构。相控阵声场特性仿真分析结果表明该实验平台具有较好的波束成形和波达方向估计效果。%Focused on the algorithm study of one-dimensional and two-dimensional array signal processing,this pa-per designs an experimental platform for two-dimensional sparse ultrasonic phased array signal processing in which transmit array and receive array are interleavingly arranged and gives the general functional design of hardware( in-cluding the transmit circuit and receive circuit)and the software architecture. The simulation of the acoustic field characteristics of the phased array demonstrates that the experimental platform has better beamforming and direction of arrival( DOA)estimation results.

  6. Field Programmable Gate Array Based Parallel Strapdown Algorithm Design for Strapdown Inertial Navigation Systems

    Directory of Open Access Journals (Sweden)

    Long-Hua Ma

    2011-08-01

    Full Text Available A new generalized optimum strapdown algorithm with coning and sculling compensation is presented, in which the position, velocity and attitude updating operations are carried out based on the single-speed structure in which all computations are executed at a single updating rate that is sufficiently high to accurately account for high frequency angular rate and acceleration rectification effects. Different from existing algorithms, the updating rates of the coning and sculling compensations are unrelated with the number of the gyro incremental angle samples and the number of the accelerometer incremental velocity samples. When the output sampling rate of inertial sensors remains constant, this algorithm allows increasing the updating rate of the coning and sculling compensation, yet with more numbers of gyro incremental angle and accelerometer incremental velocity in order to improve the accuracy of system. Then, in order to implement the new strapdown algorithm in a single FPGA chip, the parallelization of the algorithm is designed and its computational complexity is analyzed. The performance of the proposed parallel strapdown algorithm is tested on the Xilinx ISE 12.3 software platform and the FPGA device XC6VLX550T hardware platform on the basis of some fighter data. It is shown that this parallel strapdown algorithm on the FPGA platform can greatly decrease the execution time of algorithm to meet the real-time and high precision requirements of system on the high dynamic environment, relative to the existing implemented on the DSP platform.

  7. [Design and implementation of the pulse wave generator with field programmable gate array based on windkessel model].

    Science.gov (United States)

    Wang, Hao; Fu, Quanhai; Xu, Lisheng; Liu, Jia; He, Dianning; Li, Qingchun

    2014-10-01

    Pulse waves contain rich physiological and pathological information of the human vascular system. The pulse wave diagnosis systems are very helpful for the clinical diagnosis and treatment of cardiovascular diseases. Accurate pulse waveform is necessary to evaluate the performances of the pulse wave equipment. However, it is difficult to obtain accurate pulse waveform due to several kinds of physiological and pathological conditions for testing and maintaining the pulse wave acquisition devices. A pulse wave generator was designed and implemented in the present study for this application. The blood flow in the vessel was simulated by modeling the cardiovascular system with windkessel model. Pulse waves can be generated based on the vascular systems with four kinds of resistance. Some functional models such as setting up noise types and signal noise ratio (SNR) values were also added in the designed generator. With the need of portability, high speed dynamic response, scalability and low power consumption for the system, field programmable gate array (FPGA) was chosen as hardware platform, and almost all the works, such as developing an algorithm for pulse waveform and interfacing with memory and liquid crystal display (LCD), were implemented under the flow of system on a programmable chip (SOPC) development. When users input in the key parameters through LCD and touch screen, the corresponding pulse wave will be displayed on the LCD and the desired pulse waveform can be accessed from the analog output channel as well. The structure of the designed pulse wave generator is simple and it can provide accurate solutions for studying and teaching pulse waves and the detection of the equipments for acquisition and diagnosis of pulse wave.

  8. Increased nuchal translucency with normal karyotype: a follow-up study of 100 cases supplemented with CGH and MLPA analyses

    DEFF Research Database (Denmark)

    Schou, K V; Kirchhoff, M; Nygaard, U;

    2009-01-01

    OBJECTIVE: To evaluate whether high-resolution comparative genomic hybridization (HR-CGH) and subtelomeric and syndrome-specific multiplex ligation-dependent probe amplification (MLPA) would detect minor chromosomal aberrations in fetuses with increased nuchal translucency thickness (NT) and norm...... disease, which supports the current approach of repeated ultrasound examinations in these high-risk pregnancies....... and subtelomeric regions. Pregnancy outcome was followed up. RESULTS: Among 80 liveborn children who were followed up, three (4%) had syndromes involving mental retardation, including a case of Sotos syndrome caused by a de novo mutation. 15% of fetuses were lost during pregnancy due to abnormalities...

  9. Concept and design of a genome-wide association genotyping array tailored for transplantation-specific studies

    DEFF Research Database (Denmark)

    Li, Yun R.; van Setten, Jessica; Verma, Shefali S.;

    2015-01-01

    genome-wide genotyping array, the 'TxArray', comprising approximately 782,000 markers with tailored content for deeper capture of variants across HLA, KIR, pharmacogenomic, and metabolic loci important in transplantation. To test concordance and genotyping quality, we genotyped 85 HapMap samples...

  10. 3D nanoimprint for NIR Fabry-Pérot filter arrays: fabrication, characterization and comparison of different cavity designs

    Science.gov (United States)

    Nguyen, Duc Toan; Ababtain, Muath; Memon, Imran; Ullah, Anayat; Istock, André; Woidt, Carsten; Xie, Weichang; Lehmann, Peter; Hillmer, Hartmut

    2016-11-01

    We report on the fabrication of miniaturized NIR spectrometers based on arrays of multiple Fabry-Pérot (FP) filters. The various cavities of different height are fabricated via a single patterning step using high resolution 3D nanoimprint technology. Today, low-cost patterning of extended cavity heights for NIR filters using the conventional spin-coated nanoimprint methodology is not available because of insufficient coating layers and low mobility of the resist materials to fill extended cavity structures. Our investigation focuses on reducing the technological effort for fabrication of homogeneous extended cavities. We study alternative cavity designs, including a new resist and apply large-area 3D nanoimprint based on hybrid mold and UV Substrate Conformal Imprint Lithography (UV-SCIL) to overcome these limitations. We compare three different solutions, i.e. (1) applying multiple spin coating of the resist to obtain thicker initial resist layers, (2) introducing a hybrid cavity (combination of a thin oxide layer and the organic cavity) to compensate the height differences, and (3) optimizing the imprint process with a novel resist material. The imprint results based on these methods demonstrate the implementation of NIR FP filters with high transmission intensity (best single filter transmission >90 %) and small line widths (<5 nm in full width at half maximum).

  11. A MIMO Reversed Antenna Array Design for gsm1800/td-scdma/lte/wi-max/wiLan/wifi

    Directory of Open Access Journals (Sweden)

    Fang Xu

    2015-01-01

    Full Text Available A triband MIMO antenna used for gsm1800/td-scdma/lte/wi-max/wiLan/wifi has been proposed in this paper. The design with the size of 32 m ∗ 73.6 mm is fabricated on FR4 substrate (thickness is 1.6 mm. This antenna consists of two reversed monopole meandered radiators and defected ground structure which work together to achieve impedance match and enhance isolation for all operating bands. According to the subsequent measured results, the working frequency domains are at gsm1800 (1.71 GHz–1.88 GHz, td-scdma (1.88 GHz–2.025 GHz, lte (2.1–2.35, 2.48–2.51, wi-max (3.5 GHz, 5.5 GHz, wiLan (5.725 GHz–5.8 GHz, and wifi (5.8 GHz–5.88 GHz approximately. Besides, the measured radiation patterns (gain total are also well at these working frequency domains and the omnidirectional performance has been achieved for the reversed MIMO antenna array. Furthermore, the realized isolation is more than 15 dB, 24.2 dB, and 22 dB at the first, the second, and the third working frequency band, respectively.

  12. 3D nanoimprint for NIR Fabry-Pérot filter arrays: fabrication, characterization and comparison of different cavity designs

    Directory of Open Access Journals (Sweden)

    Duc Toan Nguyen

    2016-02-01

    Full Text Available Abstract We report on the fabrication of miniaturized NIR spectrometers based on arrays of multiple Fabry-Pérot (FP filters. The various cavities of different height are fabricated via a single patterning step using high resolution 3D nanoimprint technology. Today, low-cost patterning of extended cavity heights for NIR filters using the conventional spin-coated nanoimprint methodology is not available because of insufficient coating layers and low mobility of the resist materials to fill extended cavity structures. Our investigation focuses on reducing the technological effort for fabrication of homogeneous extended cavities. We study alternative cavity designs, including a new resist and apply large-area 3D nanoimprint based on hybrid mold and UV Substrate Conformal Imprint Lithography (UV-SCIL to overcome these limitations. We compare three different solutions, i.e. (1 applying multiple spin coating of the resist to obtain thicker initial resist layers, (2 introducing a hybrid cavity (combination of a thin oxide layer and the organic cavity to compensate the height differences, and (3 optimizing the imprint process with a novel resist material. The imprint results based on these methods demonstrate the implementation of NIR FP filters with high transmission intensity (best single filter transmission >90 % and small line widths (<5 nm in full width at half maximum.

  13. Design and fabrication of a flexible MEMS-based electro-mechanical sensor array for breast cancer diagnosis

    Science.gov (United States)

    Pandya, Hardik J.; Park, Kihan; Desai, Jaydev P.

    2015-07-01

    The use of flexible micro-electro-mechanical systems (MEMS)-based devices provides a unique opportunity in bio-medical robotics such as the characterization of normal and malignant tissues. This paper reports on the design and development of a flexible MEMS-based sensor array integrating mechanical and electrical sensors on the same platform to enable the study of the change in electro-mechanical properties of benign and cancerous breast tissues. In this work, we present the analysis of the electrical characterization of the tissue specimens and also demonstrate the feasibility of using the sensor for the mechanical characterization of tissue specimens. Eight strain gauges acting as mechanical sensors were fabricated using poly(3,4-ethylenedioxythiophene) poly(styrenesulfonate) (PEDOT:PSS) conducting polymer on poly(dimethylsiloxane) (PDMS) as the substrate material. Eight electrical sensors were fabricated using SU-8 pillars on gold (Au) pads which were patterned on the strain gauges separated by a thin insulator (SiO2 1.0 μm). These pillars were coated with gold to make them conducting. The electro-mechanical sensors are integrated on the same substrate. The sensor array covers a 180 μm  ×  180 μm area and the size of the complete device is 20 mm in diameter. The diameter of each breast tissue core used in the present study was 1 mm and the thickness was 8 μm. The region of interest was 200 μm  ×  200 μm. A microindentation technique was used to characterize the mechanical properties of the breast tissues. The sensor is integrated with conducting SU-8 pillars to study the electrical property of the tissue. Through electro-mechanical characterization studies using this MEMS-based sensor, we were able to measure the accuracy of the fabricated device and ascertain the difference between benign and cancers breast tissue specimens.

  14. Experimental and numerical analysis of B1+ field and SAR with a new transmit array design for 7 T breast MRI

    Science.gov (United States)

    Kim, Junghwan; Krishnamurthy, Narayan; Santini, Tales; Zhao, Yujuan; Zhao, Tiejun; Bae, Kyongtae Ty; Ibrahim, Tamer S.

    2016-08-01

    Developing a radiofrequency (RF) coil system that produces a uniform B1+ field (circularly polarized component of the transverse magnetic field responsible for excitation) and low specific absorption rate (SAR) is critical for high performance ultrahigh field human imaging. In this study, we provide the design of a new eight channel radiofrequency (RF) transmit (Tx) array for breast MRI at 7 T. A numerical analysis utilizing an in-house finite difference time domain (FDTD) package was carried out in (1) four breast models, (2) homogeneous spherical model and (3) full body model to calculate the B1+ intensity (μT) and homogeneity represented by coefficient of variation (CoV = standard deviation/mean) in the proposed RF array design. The numerical results were compared with that measured in breast phantom (Bphantom) and homogeneous spherical phantom at 7 T MRI and showed very good agreement. Average and peak SARs were also calculated in the four breast models and the temperature rises due to the operation of the RF array were also measured in the Bphantom. The proposed RF array; which can operate in a single or multi transmit modes, demonstrates homogeneous RF field excitation with acceptable local/average SAR levels for breast MRI at 7 T.

  15. Aneuploidy screening by array comparative genomic hybridization improves success rates of in vitro fertilization: A multicenter Indian study

    Directory of Open Access Journals (Sweden)

    Aditi Kotdawala

    2016-01-01

    Full Text Available Objective: To evaluate the usefulness of preimplantation genetic screening (PGS using array comparative genomic hybridization (aCGH in the Indian population. Materials and Methods: This is a retrospective, multicenter study including 235 PGS cycles following intracytoplasmic sperm injection performed at six different infertility centers from September 2013 to June 2015. Patients were divided as per maternal age in several groups (40 years and as per indication for undergoing PGS. Indications for performing PGS were recurrent miscarriage, repetitive implantation failure, severe male factor, previous trisomic pregnancy, and advanced maternal age (≥35. Day 3 embryo biopsy was performed and analyzed by aCGH followed by day 5 embryo transfer in the same cycle or the following cycle. Outcomes such as pregnancy rates (PRs/transfer, implantation rates, miscarriage rates, percentage of abnormal embryos, and number of embryos with more than one aneuploidy and chaotic patterns were recorded for all the treated subjects based on different age and indication groups. Results: aCGH helped in identifying aneuploid embryos, thus leading to consistent implantation (range: 33.3%-42.9% and PRs per transfer (range: 31.8%-54.9% that were obtained for all the indications in all the age groups, after performing PGS. Conclusion: Aneuploidy is one of the major factors which affect embryo implantation. aCGH can be successfully employed for screening of aneuploid embryos. When euploid embryos are transferred, an increase in PRs can be achieved irrespective of the age or the indication.

  16. Design and Application of Wuhan Ionospheric Oblique Backscattering Sounding System with the Addition of an Antenna Array (WIOBSS-AA).

    Science.gov (United States)

    Cui, Xiao; Chen, Gang; Wang, Jin; Song, Huan; Gong, Wanlin

    2016-06-15

    The Wuhan Ionospheric Oblique Backscattering Sounding System with the addition of an antenna array (WIOBSS-AA) is the newest member of the WIOBSS family. It is a multi-channel radio system using phased-array antenna technology. The transmitting part of this radio system applies an array composed of five log-periodic antennas to form five beams that span an area to the northwest of the radar site. The hardware and the antenna array of the first multi-channel ionosonde in the WIOBSS family are introduced in detail in this paper. An ionospheric detection experiment was carried out in Chongyang, Hubei province, China on 16 March 2015 to examine the performance of WIOBSS-AA. The radio system demonstrated its ability to obtain ionospheric electron density information over a wide area. The observations indicate that during the experiment, the monitored large-area ionospheric F2-layer was calm and electron density increased with decreasing latitude.

  17. Design and implementation of a space domain spherical microphone array with application to source localization and separation.

    Science.gov (United States)

    Bai, Mingsian R; Yao, Yueh Hua; Lai, Chang-Sheng; Lo, Yi-Yang

    2016-03-01

    In this paper, four delay-and-sum (DAS) beamformers formulated in the modal domain and the space domain for open and solid spherical apertures are examined through numerical simulations. The resulting beampatterns reveal that the mainlobe of the solid spherical DAS array is only slightly narrower than that of the open array, whereas the sidelobes of the modal domain array are more significant than those of the space domain array due to the discrete approximation of continuous spherical Fourier transformation. To verify the theory experimentally, a three-dimensionally printed spherical array on which 32 micro-electro-mechanical system microphones are mounted is utilized for localization and separation of sound sources. To overcome the basis mismatch problem in signal separation, source localization is first carried out using minimum variance distortionless response beamformer. Next, Tikhonov regularization (TIKR) and compressive sensing (CS) are employed to extract the source signal amplitudes. Simulations and experiments are conducted to validate the proposed spherical array system. Objective perceptual evaluation of speech quality test and a subjective listening test are undertaken in performance evaluation. The experimental results demonstrate better separation quality achieved by the CS approach than by the TIKR approach at the cost of computational complexity.

  18. Concept, design and implementation of a cardiovascular gene-centric 50 k SNP array for large-scale genomic association studies.

    Directory of Open Access Journals (Sweden)

    Brendan J Keating

    Full Text Available A wealth of genetic associations for cardiovascular and metabolic phenotypes in humans has been accumulating over the last decade, in particular a large number of loci derived from recent genome wide association studies (GWAS. True complex disease-associated loci often exert modest effects, so their delineation currently requires integration of diverse phenotypic data from large studies to ensure robust meta-analyses. We have designed a gene-centric 50 K single nucleotide polymorphism (SNP array to assess potentially relevant loci across a range of cardiovascular, metabolic and inflammatory syndromes. The array utilizes a "cosmopolitan" tagging approach to capture the genetic diversity across approximately 2,000 loci in populations represented in the HapMap and SeattleSNPs projects. The array content is informed by GWAS of vascular and inflammatory disease, expression quantitative trait loci implicated in atherosclerosis, pathway based approaches and comprehensive literature searching. The custom flexibility of the array platform facilitated interrogation of loci at differing stringencies, according to a gene prioritization strategy that allows saturation of high priority loci with a greater density of markers than the existing GWAS tools, particularly in African HapMap samples. We also demonstrate that the IBC array can be used to complement GWAS, increasing coverage in high priority CVD-related loci across all major HapMap populations. DNA from over 200,000 extensively phenotyped individuals will be genotyped with this array with a significant portion of the generated data being released into the academic domain facilitating in silico replication attempts, analyses of rare variants and cross-cohort meta-analyses in diverse populations. These datasets will also facilitate more robust secondary analyses, such as explorations with alternative genetic models, epistasis and gene-environment interactions.

  19. Design and performance of large-pixel-size high-fill-fraction TES arrays for future X-ray astrophysics missions

    Energy Technology Data Exchange (ETDEWEB)

    Figueroa-Feliciano, E. [NASA Goddard Space Flight Center, Greenbelt, MD 20771 (United States)]. E-mail: enectali@mit.edu; Bandler, S.R. [NASA Goddard Space Flight Center, Greenbelt, MD 20771 (United States); Chervenak, J. [NASA Goddard Space Flight Center, Greenbelt, MD 20771 (United States); Finkbeiner, F. [NASA Goddard Space Flight Center, Greenbelt, MD 20771 (United States); Iyomoto, N. [NASA Goddard Space Flight Center, Greenbelt, MD 20771 (United States); Kelley, R.L. [NASA Goddard Space Flight Center, Greenbelt, MD 20771 (United States); Kilbourne, C.A. [NASA Goddard Space Flight Center, Greenbelt, MD 20771 (United States); Porter, F.S. [NASA Goddard Space Flight Center, Greenbelt, MD 20771 (United States); Saab, T. [NASA Goddard Space Flight Center, Greenbelt, MD 20771 (United States); Sadleir, J. [NASA Goddard Space Flight Center, Greenbelt, MD 20771 (United States); White, J. [NASA Goddard Space Flight Center, Greenbelt, MD 20771 (United States)

    2006-04-15

    We have designed, modeled, fabricated and tested a 600{mu}m high-fill-fraction microcalorimeter array that will be a good match to the requirements of future X-ray missions. Our devices use transition-edge sensors coupled to overhanging bismuth/copper absorbers to produce arrays with 97% or higher fill fraction. An extensive modeling effort was undertaken in order to accommodate large pixel sizes (500-1000{mu}m) and maintain the best energy resolution possible. The finite thermalization time of the large absorber and the associated position dependence of the pulse shape on absorption position constrain the time constants of the system given a desired energy-resolution performance. We show the results of our analysis and our new pixel design, consisting of a novel TES-on-the-side architecture which creates a controllable TES-absorber conductance.

  20. Copy Number Variation Analysis by Array Analysis of Single Cells Following Whole Genome Amplification.

    Science.gov (United States)

    Dimitriadou, Eftychia; Zamani Esteki, Masoud; Vermeesch, Joris Robert

    2015-01-01

    Whole genome amplification is required to ensure the availability of sufficient material for copy number variation analysis of a genome deriving from an individual cell. Here, we describe the protocols we use for copy number variation analysis of non-fixed single cells by array-based approaches following single-cell isolation and whole genome amplification. We are focusing on two alternative protocols, an isothermal and a PCR-based whole genome amplification method, followed by either comparative genome hybridization (aCGH) or SNP array analysis, respectively.

  1. Design and validation of a large-format transition edge sensor array magnetic shielding system for space application

    Science.gov (United States)

    Bergen, A.; van Weers, H. J.; Bruineman, C.; Dhallé, M. M. J.; Krooshoop, H. J. G.; ter Brake, H. J. M.; Ravensberg, K.; Jackson, B. D.; Wafelbakker, C. K.

    2016-10-01

    The paper describes the development and the experimental validation of a cryogenic magnetic shielding system for transition edge sensor based space detector arrays. The system consists of an outer mu-metal shield and an inner superconducting niobium shield. First, a basic comparison is made between thin-walled mu-metal and superconducting shields, giving an off-axis expression for the field inside a cup-shaped superconductor as a function of the transverse external field. Starting from these preliminary analytical considerations, the design of an adequate and realistic shielding configuration for future space flight applications (either X-IFU [D. Barret et al., e-print arXiv:1308.6784 [astro-ph.IM] (2013)] or SAFARI [B. Jackson et al., IEEE Trans. Terahertz Sci. Technol. 2, 12 (2012)]) is described in more detail. The numerical design and verification tools (static and dynamic finite element method (FEM) models) are discussed together with their required input, i.e., the magnetic-field dependent permeability data. Next, the actual manufacturing of the shields is described, including a method to create a superconducting joint between the two superconducting shield elements that avoid flux penetration through the seam. The final part of the paper presents the experimental verification of the model predictions and the validation of the shield's performance. The shields were cooled through the superconducting transition temperature of niobium in zero applied magnetic field (<10 nT) or in a DC field with magnitude ˜100 μT, applied either along the system's symmetry axis or perpendicular to it. After cool-down, DC trapped flux profiles were measured along the shield axis with a flux-gate magnetometer and the attenuation of externally applied AC fields (100 μT, 0.1 Hz, both axial and transverse) was verified along this axis with superconducting quantum interference device magnetometers. The system's measured on-axis shielding factor is greater than 106, well exceeding

  2. Multi-fidelity optimization design of phased array radar antenna%相控阵雷达天线多保真度优化设计

    Institute of Scientific and Technical Information of China (English)

    虞跨海; 段世忠; 李朝伟; 周树平

    2012-01-01

    研究了某型相控阵雷达天线多保真度优化设计技术.基于代理模型,提出了天线单元优化、阵列优化和近似模型的分层次多保真度优化方法,以提高计算效率;采用KS包络函数将多目标问题转化为单目标函数;以雷达天线几何模型参数为设计变量,以提高雷达天线电磁性能为目标,以温度、应力、变形等为约束,在Isight平台下建立了某型相控阵雷达天线的多学科设计优化系统,实现了雷达天线阵列的多学科设计优化,在满足传热、强度等学科约束的条件下,提高了雷达天线的电磁性能.%Multi-fidelity design optimization methodology for a phased array radar antenna was studied. Based on agent model, a multi-level multi-fidelity optimization methodology, including antenna u-nite optimization, array optimization and approximate model was proposed to improve the computational efficiency. KS (kreisselmeier-steinhauser) envelop function method was exploited to transform the multi-objective into a single function. A phased array radar antenna design optimization procedure was established by employing the commercial software Isight, geometry model parameters of radar antenna as design variables, electromagnetic properties as objectives, and temperature, stress, and deformation as constraints. Multidisciplinary design optimization of the radar antenna array was completed, and electromagnetic properties of the radar antenna were improved.

  3. Comparison of Ambient Noise From Two Station Designs, Evaluating USArray's Transportable and Flexible Arrays in the Pacific Northwest

    Science.gov (United States)

    Pfeifer, M.; Alvarez, M.; Woodward, R.; Yang, Z.

    2009-12-01

    The USArray program within the National Science Foundation-funded Earthscope program is comprised of two portable broadband seismic projects; the Transportable Array (TA), and the Flexible Array (FA). The TA consists of 400 stations occupy locations within the United States on a nominal 70 km spacing for a period of approximately 24 months. As a network, these TA stations roll from west to east so that within 10 years the entire lower 48 states will have been occupied by the TA network. As a complementary component of USArray, the FA pool of instruments is comprised of 1200 active-source, 120 short-period and 326 broadband portable stations. These instruments are used by Principal Investigator-driven studies which focus on geologic targets within the TA footprint. Currently the TA network is transitioning from the Rocky Mountains into the Great Plains. The FA currently has four experiments installed. In this study we quantify the overall performance of these two tandem networks using a controlled set of continuous recordings in Western Washington. We compare the background noise levels between the standard deep TA and shallow FA broadband sensor vault system. We use McNamara’s probability density function (PDF) analysis as the basis of the comparison. We combine the network wide PDF’s of each network for a period of over 600 days of contemporaneous recordings. Preliminary analysis using data from 28 TA stations in western Washington and 47 nearby FA stations from the CAFE experiment (Abers, et al. Eos Trans. AGU 88(52), Fall Meet. Suppl. S43D-07), show that the TA stations are quieter at periods below 20 seconds by about 12 dB on the horizontal components. The vertical components for both the TA and FA are equivalent for periods below 5 seconds. At higher frequencies (> 2 Hz), however, the FA shallower vault is quieter by approximately 10 dB on both the vertical and horizontal components. The question addressed is, what is contributing to the difference in

  4. Design of 8 Elements Wideband Circularly Polarized Microstrip Array Antenna%8元宽频带圆极化微带天线阵的设计

    Institute of Scientific and Technical Information of China (English)

    胡永金; 丁卫平; 柴仁文

    2011-01-01

    采用空气夹层的双层圆形微带贴片结构,通过Wilkinson功分移相器进行馈电,设计了宽带圆极化天线单元以及8元圆极化微带阵列天线,并加工制作了天线阵实物。实测结果表明:该阵列天线在2.0GHz2.5GHz频率范围内,圆极化轴比小于3dB,回波损耗小于一10dB,增益大于12dB,满足S频段卫星测控系统天线的指标要求。%Double-layer circular microstrip patch with air interlayer structure and Wilkinson power divider series phase shifter were applied to the design of wideband circularly polarized microstrip antenna element and 8 elements array antenna. The array antenna was fabricated and measured, with the axial ratio of the array antenna below 3 dB from 2.0 to 2. 5 GHz, its return loss below --10 dB, and its gain more than 12 dB in the bandwidth. Measured results show that the array antenna satisfies the requirements of S band satellite telemetry and control system application.

  5. Design of a stacked diode array pumped Nd:YAG laser with a truncated compound parabolic concentrator and a diffusive optical cavity

    CERN Document Server

    Lee, S M; Yun, M J; Cha, B H; Lee, J M

    1999-01-01

    We designed and analyzed a new Nd:YAG laser which employs a combination of a truncated compound parabolic concentrator (CPC) and a diffusive optical pump cavity for pumping with a stacked diode array. A design code based on a ray-tracing algorithm was developed to analyze the Nd:YAG laser system. The optimum truncated CPC profile was determined from analyses of the dependences of the pump-beam distribution and the total absorbed power in the laser crystal upon the acceptance angle and the slit width of the CPC. In addition, the analyses show the importance of the acceptance angle in designing an efficient laser system with a truncated CPC. Using conservative design parameters, the design code predicted a Nd:YAG laser output of 130 W with a corresponding optical slope efficiency of 44%.

  6. The coating design of phase-shifting reflector array with high reflectance and specified reflection phase shifts for static Michelson interferometer

    Science.gov (United States)

    Zhang, Xuanni; Zhang, Hui; Wang, Yijun

    2016-02-01

    The optical Doppler Michelson imaging interferometer is widely used for wind measurements. Four interferograms obtained simultaneously are needed to immune to environmental disturbances. Thus, a static and divided mirror Michelson interferometer is proposed. Its highlight is the phase-shifting reflector array, which divides one mirror into four quadrants coated by different multilayer films with high reflectance, specified phase steps π/2 and little polarization effects. By combining analytical and empirical method, four coatings are designed with software TFCalc. The simulated results showed good agreement with the desired optical properties. Due to the limitation of the optical material and function of the software TFCalc, there are some design errors within tolerance.

  7. Comparing temporally-focused GPC and CGH for two-photon excitation and optogenetics in turbid media

    DEFF Research Database (Denmark)

    Villangca, Mark Jayson; Bañas, Andrew Rafael; Aabo, Thomas

    2013-01-01

    Inherent inhomogeneity in turbid media not only hinders imaging but also projection of arbitrary light patterns for excitation or optical manipulation. In this work we compare two of the most popular phase modulation-based techniques in beam shaping. The Generalized Phase Contrast (GPC) method uses...... a 4f setup that directly converts phase information to intensity. The GPC method has been used with temporal focusing for excitation in two-photon optogenetics [1-3]. The computer generated hologram (CGH) is also used to generate arbitrary light patterns and has been used for optical manipulation...... and fabrication because of its high diffraction efficiency and axial confinement. We model the effect of the turbid media as a phase randomization process. We compare the quality and asses the degradation of the projected light pattern for both techniques as it propagates in the turbid media....

  8. Design of Multi-unit Control System of High Voltage Power Supply for LASCAR Scintillator Detector Array

    Institute of Scientific and Technical Information of China (English)

    WuLijie; WangJinchuan; XiaoGuoqing; GuoZhongyan; ZhanWenlong; QiHuirong; XuZhiguo; ZhangLi; DingXianli; XuHushan; SunZhiyu; LiJiaxing; LiChen; WangMeng; ChenLixin; HuZhengguo; MaoRuishi; ZhaoTiecheng

    2003-01-01

    The power voltages of Photomultipliers (PMTs) at RIBLL LASCAR scintillator detector array are distributed between 900 V and 1 800 V irregularly. 392 CC123 modules are employed to supply high voltage for the PMT array. The CC123 module serves as PMT interface groupware package, and it can transform +12 V DC input voltage to ranges of 0~-2200 V for the PMT power supply corresponding to 0~+5 V output voltage from the control board crate. The relation of PMT power supply with the output voltage of the control crate is shown in Fig.1.

  9. A design for a linear array PIN photodiode for use in a Computed mammo-Tomography (CmT) system

    Energy Technology Data Exchange (ETDEWEB)

    Park, Shin-Woong [Department of Electronics and Information Engineering, Korea University, 1.5ka Anam-dong, Sungbuk-gu, Seoul 136-701 (Korea, Republic of); Yuk, Sunwoo [Department of Electronics and Control, Korea Orthopedics and Rehabilitation Engineering Center, 47-3, Gusan-dong, Bupyung-gu, Incheon 403-712 (Korea, Republic of); Park, Jung-Byung [DRGEM Corporation, 6th Floor Research Institute, Asan Medical Center, Pungnap-2dong, Songpa-gu, Seoul 138-736 (Korea, Republic of); Yi, Yun [Department of Electronics and Information Engineering, Korea University, 1.5ka Anam-dong, Sungbuk-gu, Seoul 136-701 (Korea, Republic of)], E-mail: yunyi@korea.ac.kr

    2009-10-21

    A p-i-n (PIN) photodiode has been used in a solid-state detector for X-ray detection as a photosensor of visible light from the scintillator. The most sensitive material used as low-energy X-ray detector in the mammography system is a Gd{sub 2}O{sub 2}S (GOS). As the light from GOS having a short wavelength in the range of 450-700 nm (peak at 510 nm) is absorbed within a very shallow layer near the surface of photodiode before arriving at depletion region and does not contribute to the signal. For designing the PIN photodiode, it is important to make p-layer as shallow as possible. In order to achieve shallow junction, the optimum conditions of ion implantation such as thickness of SiO{sub 2} oxide barrier, tilting angle of the wafer with respect to incident ion beam, and annealing conditions, have been determined using simulation results. The penetration depths are about 2 {mu}m for 510 nm, and 7 {mu}m for 700 nm. It is necessary for adequate depletion depth (about 10 {mu}m) to acquire the entire incident light. So far, wafers of {>=}1000 and {>=}150 {omega} cm resistivity were chosen, which offer about 15 and 6 {mu}m depletion depth, respectively. The pixel pitch of photodiode is 0.4 mmx3.0 mm and one module has 64 channels in linear array. Depth of the active p-layer is under 0.3 {mu}m in zero bias. Measured leakage currents under 10 pA/mm{sup 2} for both diodes and junction capacitances are 16 and 29 pF/mm{sup 2} in zero bias for the diodes of {>=}150 and {>=}1000 {omega} cm resistivity, respectively. The breast phantom, which was scanned by the Computed mammo-Tomography (CmT) system with two different detector modules and the data acquisition system, was developed. Little differences for distinct light absorption were shown in the three-dimensional images acquired in this study.

  10. “Distributed hybrid” MH–CGH2 system for hydrogen storage and its supply to LT PEMFC power modules

    Energy Technology Data Exchange (ETDEWEB)

    Lototskyy, M., E-mail: mlototskyy@uwc.ac.za [HySA Systems Competence Centre, South African Institute for Advanced Materials Chemistry, Faculty of Natural Sciences, University of the Western Cape, Private Bag X17, Bellville 7535 (South Africa); Tolj, I.; Davids, M.W.; Bujlo, P. [HySA Systems Competence Centre, South African Institute for Advanced Materials Chemistry, Faculty of Natural Sciences, University of the Western Cape, Private Bag X17, Bellville 7535 (South Africa); Smith, F. [Impala Platinum Ltd, Springs (South Africa); Pollet, B.G. [HySA Systems Competence Centre, South African Institute for Advanced Materials Chemistry, Faculty of Natural Sciences, University of the Western Cape, Private Bag X17, Bellville 7535 (South Africa)

    2015-10-05

    Highlights: • Prototype hydrogen storage and supply system for LTPEMFC applications was developed. • Combination of MH and CGH2 tanks with common gas manifold was used. • Thermal coupling of fuel cell stack and MH tank was applied. • The system uses AB2-type MH; H2 equilibrium pressure ∼10 bar at room temperature. • Shorter H2 charge time and stable H2 supply at a fluctuating load were observed. - Abstract: This paper describes the layout and presents the results of the testing of a novel prototype “distributed hybrid” hydrogen storage and supply system that has the potential to be used for Low Temperature Proton Exchange Membrane Fuel Cell (LT-PEMFC) applications. The system consists of individual Metal Hydride (MH) and Compressed Gas (CGH2) tanks with common gas manifold, and a thermal management system where heat exchanger of the liquid heated-cooled MH tank is integrated with the cooling system of the LT-PEMFC BoP. The MH tank is filled with a medium-stability AB{sub 2}-type MH material (H{sub 2} equilibrium pressure of about 10 bar at room temperature). This innovative solution allows for (i) an increase in hydrogen storage capacity of the whole gas storage system and the reduction of H{sub 2} charge pressure; (ii) shorter charging times in the refuelling mode and smoother peaks of H{sub 2} consumption during its supply to the fuel cell stack; (iii) the use of standard parts with simple layout and lower costs; and (iv) adding flexibility in the layout and placement of the components of the hydrogen storage and supply system.

  11. An Improved Optimization Design Method for Solar Photovoltaic Arrays and Engineering Application%光伏阵列改进优化设计方法与应用

    Institute of Scientific and Technical Information of China (English)

    丁明; 刘盛; 徐志成

    2013-01-01

    光伏阵列设计主要包括阵列间距、高度、倾角、光伏模块的选择以及安装方向的确定,设计方案的优劣直接关系到场地与光照的有效利用和投资效益。在场地尺寸给定条件下,这些因素相互牵制、共同影响光伏系统电能的输出,因此光伏阵列设计的优化十分必要。首先提出计算光伏阵列自身阴影损失的改进模型;然后在该模型的基础上,建立以最大发电量和最大收益为目标的阵列设计优化模型,运用粒子群算法求解,分析各参数对年发电量的影响;最后将该方法用于实际光伏屋顶电站系统设计,并获得满意效果,验证了该设计方法的合理性与工程实用价值。%Photovoltaic array design includes determination of array distance, height, inclined angle, PV module and installation direction. The performance of design scheme affects space and light usage and investment benefits directly. In a given field, these parameters affect the system energy output interacting with each other. Therefore, Photovoltaic array optimization is necessary. In the present paper, a loss model used to calculate PV array shading loss was improved. Then, the design problem of photovoltaic solar fields for PV system to obtain maximum annual output energy and maximum gains was formulated based on the loss model. Afterward, the Particle Swarm Optimization algorithm was applied for the solution of the PV design problem and the design variables impact analysis. Lastly, the method was applied to actual roof PV system design and obtained satisfied results. The results verify the rationality of the design method and its practical value in engineering.

  12. Design of a 7m Davies-Cotton Cherenkov telescope mount for the high energy section of the Cherenkov Telescope Array

    CERN Document Server

    Rovero, A C; Vallejo, G; Supanitsky, A D; Actis, M; Botani, A; Ochoa, I; Hughes, G

    2013-01-01

    The Cherenkov Telescope Array is the next generation ground-based observatory for the study of very-high-energy gamma-rays. It will provide an order of magnitude more sensitivity and greater angular resolution than present systems as well as an increased energy range (20 GeV to 300 TeV). For the high energy portion of this range, a relatively large area has to be covered by the array. For this, the construction of ~7 m diameter Cherenkov telescopes is an option under study. We have proposed an innovative design of a Davies-Cotton mount for such a telescope, within Cherenkov Telescope Array specifications, and evaluated its mechanical and optical performance. The mount is a reticulated-type structure with steel tubes and tensioned wires, designed in three main parts to be assembled on site. In this work we show the structural characteristics of the mount and the optical aberrations at the focal plane for three options of mirror facet size caused by mount deformations due to wind and gravity.

  13. Design studies for a multi-TeV gamma-ray telescope array : PeX (PeV eXplorer)

    CERN Document Server

    Denman, Jarrad

    2014-01-01

    (Abridged) This thesis presents work towards the design of a new array of Image Atmospheric Cherenkov Telescopes (IACTs) to detect multi-TeV gamma-ray sources. The array consists of 5 telescopes in a square layout with one central telescope, known as the Pevatron eXplorer or PeX. PeX is a PeV (10^{15} eV) cosmic ray explorer that aims to study and discover gamma-ray sources in the 1 to 500 TeV range. The initial PeX design has been influenced by the HEGRA CT-System and H.E.S.S. configurations. One important feature of multi-TeV air showers is their ability to trigger telescopes at large core distance (>400m). PeX will utilise large core distance events to improve the performance and illustrate the viability of a sparse array for multi-TeV gamma-ray astronomy. One important aspect of the thesis (Chapter 6) was the investigation of a new time-based image cleaning method. The arrival time between photons in two adjacent pixels in the camera is used to apply an extra cut which helps mitigate night sky background....

  14. Design of a prototype device to calibrate the Large Size Telescope camera of the Cherenkov Telescope Array

    CERN Document Server

    Iori, M; De Persio, F; Chatterjee, A; Ferrarotto, F; Nagesh, B K; Saha, L; Singh, B B

    2015-01-01

    The Cherenkov Telescope Array is a project that aims to exploring the highest energy region of electromagnetic spectrum. Two arrays, one for each hemisphere, will cover the full sky in a range from few tens of GeV to hundreds of TeV improving the sensitivity and angular resolution of the present operating arrays. A prototype of the Large Size Telescope (LST) for the study of gamma ray astronomy above some tens of GeV will be installed at the Canary Island of La Palma in 2016. The LST camera, made by an array of photomultipliers (PMTs), requires an accurate and systematic calibration over a wide dynamic range. In this contribution, we present an optical calibration system made by a 355 nm wavelength laser with 400 ps pulse width, 1 muJ output energy, up to 4k Hz repetition rate and a set of neutral density filters to obtain a wide range of photon intensities, up to 1000 photoelectrons/PMT, to be sent to the camera plane 28 m away. The number of photons after the diffuser of the calibration box, located in the ...

  15. 3-D Imaging Using Row–Column-Addressed Arrays With Integrated Apodization. Part I: Apodization Design and Line Element Beamforming

    DEFF Research Database (Denmark)

    Rasmussen, Morten Fischer; Christiansen, Thomas Lehrmann; Thomsen, Erik Vilain;

    2015-01-01

    with different apodizations is simulated. A Hann apodization is shown to decrease imaging performance away from the center axis of the array because of a decrease in main lobe amplitude. Instead, a static roll-off apodization region located at the ends of the line elements is proposed. In simulations, the peak...

  16. Design and microfabrication of a high-aspect-ratio PDMS microbeam array for parallel nanonewton force measurement and protein printing

    Science.gov (United States)

    Sasoglu, F. M.; Bohl, A. J.; Layton, B. E.

    2007-03-01

    Cell and protein mechanics has applications ranging from cellular development to tissue engineering. Techniques such as magnetic tweezers, optic tweezers and atomic force microscopy have been used to measure cell deformation forces of the order of piconewtons to nanonewtons. In this study, an array of polymeric polydimethylsiloxane (PDMS) microbeams with diameters of 10-40 µm and lengths of 118 µm was fabricated from Sylgard® with curing agent concentrations ranging from 5% to 20%. The resulting spring constants were 100-300 nN µm-1. The elastic modulus of PDMS was determined experimentally at different curing agent concentrations and found to be 346 kPa to 704 kPa in a millimeter-scale array and ~1 MPa in a microbeam array. Additionally, the microbeam array was used to print laminin for the purpose of cell adhesion. Linear and nonlinear finite element analyses are presented and compared to the closed-from solution. The highly compliant, transparent, biocompatible PDMS may offer a method for more rapid throughput in cell and protein mechanics force measurement experiments with sensitivities necessary for highly compliant structures such as axons.

  17. The telescope control of the ASTRI SST-2M prototype for the Cherenkov telescope Array: hardware and software design architecture

    Science.gov (United States)

    Antolini, Elisa; Cascone, Enrico; Schwarz, Joseph; Stringhetti, Luca; Tanci, Claudio; Tosti, Gino; Aisa, Damiano; Aisa, Simone; Bagaglia, Marco; Busatta, Andrea; Campeggi, Carlo; Cefala, Marco; Farnesini, Lucio; Giacomel, Stefano; Marchiori, Gianpiero; Marcuzzi, Enrico; Nucciarelli, Giuliano; Piluso, Antonfranco

    2014-07-01

    ASTRI (Astrofisica con Specchi a Tecnologia Replicante Italiana) is a flagship project of the Italian Ministry of Research and led by the Italian National Institute of Astrophysics (INAF). One of its aims is to develop, within the Cherenkov Telescope Array (CTA) framework, an end-to-end small-sized telescope prototype in a dual-mirror configuration (SST-2M) in order to investigate the energy range E ~ 1-100 TeV. A long-term goal of the ASTRI program is the production of an ASTRI/CTA mini-array composed of seven SST-2M telescopes. The prototype, named ASTRI SST-2M, is seen as a standalone system that needs only network and power connections to work. The software system that is being developed to control the prototype is the base for the Mini-Array Software System (MASS), which has the task to make possible the operation of both the ASTRI SST-2M prototype and the ASTRI/CTA mini-array. The scope of this contribution is to give an overview of the hardware and software architecture adopted for the ASTRI SST- 2M prototype, showing how to apply state of the art industrial technologies to telescope control and monitoring systems.

  18. Timed arrays wideband and time varying antenna arrays

    CERN Document Server

    Haupt, Randy L

    2015-01-01

    Introduces timed arrays and design approaches to meet the new high performance standards The author concentrates on any aspect of an antenna array that must be viewed from a time perspective. The first chapters briefly introduce antenna arrays and explain the difference between phased and timed arrays. Since timed arrays are designed for realistic time-varying signals and scenarios, the book also reviews wideband signals, baseband and passband RF signals, polarization and signal bandwidth. Other topics covered include time domain, mutual coupling, wideband elements, and dispersion. The auth

  19. Software design and code generation for the engineering graphical user interface of the ASTRI SST-2M prototype for the Cherenkov Telescope Array

    Science.gov (United States)

    Tanci, Claudio; Tosti, Gino; Antolini, Elisa; Gambini, Giorgio F.; Bruno, Pietro; Canestrari, Rodolfo; Conforti, Vito; Lombardi, Saverio; Russo, Federico; Sangiorgi, Pierluca; Scuderi, Salvatore

    2016-08-01

    ASTRI is an on-going project developed in the framework of the Cherenkov Telescope Array (CTA). An end- to-end prototype of a dual-mirror small-size telescope (SST-2M) has been installed at the INAF observing station on Mt. Etna, Italy. The next step is the development of the ASTRI mini-array composed of nine ASTRI SST-2M telescopes proposed to be installed at the CTA southern site. The ASTRI mini-array is a collaborative and international effort carried on by Italy, Brazil and South-Africa and led by the Italian National Institute of Astrophysics, INAF. To control the ASTRI telescopes, a specific ASTRI Mini-Array Software System (MASS) was designed using a scalable and distributed architecture to monitor all the hardware devices for the telescopes. Using code generation we built automatically from the ASTRI Interface Control Documents a set of communication libraries and extensive Graphical User Interfaces that provide full access to the capabilities offered by the telescope hardware subsystems for testing and maintenance. Leveraging these generated libraries and components we then implemented a human designed, integrated, Engineering GUI for MASS to perform the verification of the whole prototype and test shared services such as the alarms, configurations, control systems, and scientific on-line outcomes. In our experience the use of code generation dramatically reduced the amount of effort in development, integration and testing of the more basic software components and resulted in a fast software release life cycle. This approach could be valuable for the whole CTA project, characterized by a large diversity of hardware components.

  20. Massive MIMO Antenna Array Design for 5 G Communication System%一种用于5G的大规模MIMO天线阵设计

    Institute of Scientific and Technical Information of China (English)

    毛建军; 于大群; 焦永昌

    2016-01-01

    设计了一种用于第五代移动通信系统的大规模MIMO天线阵。该天线阵采用8×8矩形排布,天线单元采用缝隙耦合馈电的贴片形式,通过蚀刻在上层地板上的两个正交H型缝隙对辐射贴片分别耦合馈电来实现±45°双线极化特性。所设计的天线阵工作在3.4 GHz~3.6 GHz,具有剖面低、结构紧凑、便于与射频前端集成化设计的特点,能够很好地满足下一代移动通信系统对天线阵的设计要求。%A massive MIMO antenna array for the 5G communication system is designed.The antenna array is with 8×8 elements and the rectangular arrangement.The patch fed by coupled slots is chosen as the array element, which realizes ±45°dual-linear polarization by the excitation of two orthogonal H shape aperture slots etched on the upper ground.The designed antenna covering 3.4 GHz~3.6 GHz frequency band has advantages such as low profile,compact structure and easy integration with RF frontend, which can meet the demand of antenna array for the next generation communication system.