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Sample records for cenocepacia j2315 sessile

  1. Transcriptional response of Burkholderia cenocepacia J2315 sessile cells to treatments with high doses of hydrogen peroxide and sodium hypochlorite

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    Nelis Hans

    2010-02-01

    Full Text Available Abstract Background Burkholderia cepacia complex bacteria are opportunistic pathogens, which can cause severe respiratory tract infections in patients with cystic fibrosis (CF. As treatment of infected CF patients is problematic, multiple preventive measures are taken to reduce the infection risk. Besides a stringent segregation policy to prevent patient-to-patient transmission, clinicians also advise patients to clean and disinfect their respiratory equipment on a regular basis. However, problems regarding the efficacy of several disinfection procedures for the removal and/or killing of B. cepacia complex bacteria have been reported. In order to unravel the molecular mechanisms involved in the resistance of biofilm-grown Burkholderia cenocepacia cells against high concentrations of reactive oxygen species (ROS, the present study focussed on the transcriptional response in sessile B. cenocepacia J2315 cells following exposure to high levels of H2O2 or NaOCl. Results The exposure to H2O2 and NaOCl resulted in an upregulation of the transcription of 315 (4.4% and 386 (5.4% genes, respectively. Transcription of 185 (2.6% and 331 (4.6% genes was decreased in response to the respective treatments. Many of the upregulated genes in the NaOCl- and H2O2-treated biofilms are involved in oxidative stress as well as general stress response, emphasizing the importance of the efficient neutralization and scavenging of ROS. In addition, multiple upregulated genes encode proteins that are necessary to repair ROS-induced cellular damage. Unexpectedly, a prolonged treatment with H2O2 also resulted in an increased transcription of multiple phage-related genes. A closer inspection of hybridisation signals obtained with probes targeting intergenic regions led to the identification of a putative 6S RNA. Conclusion Our results reveal that the transcription of a large fraction of B. cenocepacia J2315 genes is altered upon exposure of sessile cells to ROS. These

  2. Exploring the metabolic network of the epidemic pathogen Burkholderia cenocepacia J2315 via genome-scale reconstruction

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    Panda Gurudutta

    2011-05-01

    Full Text Available Abstract Background Burkholderia cenocepacia is a threatening nosocomial epidemic pathogen in patients with cystic fibrosis (CF or a compromised immune system. Its high level of antibiotic resistance is an increasing concern in treatments against its infection. Strain B. cenocepacia J2315 is the most infectious isolate from CF patients. There is a strong demand to reconstruct a genome-scale metabolic network of B. cenocepacia J2315 to systematically analyze its metabolic capabilities and its virulence traits, and to search for potential clinical therapy targets. Results We reconstructed the genome-scale metabolic network of B. cenocepacia J2315. An iterative reconstruction process led to the establishment of a robust model, iKF1028, which accounts for 1,028 genes, 859 internal reactions, and 834 metabolites. The model iKF1028 captures important metabolic capabilities of B. cenocepacia J2315 with a particular focus on the biosyntheses of key metabolic virulence factors to assist in understanding the mechanism of disease infection and identifying potential drug targets. The model was tested through BIOLOG assays. Based on the model, the genome annotation of B. cenocepacia J2315 was refined and 24 genes were properly re-annotated. Gene and enzyme essentiality were analyzed to provide further insights into the genome function and architecture. A total of 45 essential enzymes were identified as potential therapeutic targets. Conclusions As the first genome-scale metabolic network of B. cenocepacia J2315, iKF1028 allows a systematic study of the metabolic properties of B. cenocepacia and its key metabolic virulence factors affecting the CF community. The model can be used as a discovery tool to design novel drugs against diseases caused by this notorious pathogen.

  3. Orderly Replication and Segregation of the Four Replicons of Burkholderia cenocepacia J2315.

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    Du, Wen-Li; Dubarry, Nelly; Passot, Fanny M; Kamgoué, Alain; Murray, Heath; Lane, David; Pasta, Franck

    2016-07-01

    Bacterial genomes typically consist of a single chromosome and, optionally, one or more plasmids. But whole-genome sequencing reveals about ten per-cent of them to be multipartite, with additional replicons which by size and indispensability are considered secondary chromosomes. This raises the questions of how their replication and partition is managed without compromising genome stability and of how such genomes arose. Vibrio cholerae, with a 1 Mb replicon in addition to its 3 Mb chromosome, is the only species for which maintenance of a multipartite genome has been investigated. In this study we have explored the more complex genome of Burkholderia cenocepacia (strain J2315). It comprises an extra replicon (c2) of 3.21 Mb, comparable in size to the3.87Mb main chromosome (c1), another extra replicon(c3) of 0.87 Mb and a plasmid of 0.09 Mb. The replication origin of c1 is typically chromosomal and those of c2 and c3 are plasmid-like; all are replicated bidirectionally. Fluorescence microscopy of tagged origins indicates that all initiate replication at mid-cell and segregate towards the cell quarter positions sequentially, c1-c2-p1/c3. c2 segregation is as well-phased with the cell cycle as c1, implying that this plasmid-like origin has become subject to regulation not typical of plasmids; in contrast, c3 segregates more randomly through the cycle. Disruption of individual Par systems by deletion of parAB or by addition of parS sites showed each Par system to govern the positioning of its own replicon only. Inactivation of c1, c2 and c3 Par systems not only reduced growth rate, generated anucleate cells and compromised viability but influenced processes beyond replicon partition, notably regulation of replication, chromosome condensation and cell size determination. In particular, the absence of the c1 ParA protein altered replication of all three chromosomes, suggesting that the partition system of the main chromosome is a major participant in the choreography of

  4. Orderly Replication and Segregation of the Four Replicons of Burkholderia cenocepacia J2315.

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    Wen-Li Du

    2016-07-01

    Full Text Available Bacterial genomes typically consist of a single chromosome and, optionally, one or more plasmids. But whole-genome sequencing reveals about ten per-cent of them to be multipartite, with additional replicons which by size and indispensability are considered secondary chromosomes. This raises the questions of how their replication and partition is managed without compromising genome stability and of how such genomes arose. Vibrio cholerae, with a 1 Mb replicon in addition to its 3 Mb chromosome, is the only species for which maintenance of a multipartite genome has been investigated. In this study we have explored the more complex genome of Burkholderia cenocepacia (strain J2315. It comprises an extra replicon (c2 of 3.21 Mb, comparable in size to the3.87Mb main chromosome (c1, another extra replicon(c3 of 0.87 Mb and a plasmid of 0.09 Mb. The replication origin of c1 is typically chromosomal and those of c2 and c3 are plasmid-like; all are replicated bidirectionally. Fluorescence microscopy of tagged origins indicates that all initiate replication at mid-cell and segregate towards the cell quarter positions sequentially, c1-c2-p1/c3. c2 segregation is as well-phased with the cell cycle as c1, implying that this plasmid-like origin has become subject to regulation not typical of plasmids; in contrast, c3 segregates more randomly through the cycle. Disruption of individual Par systems by deletion of parAB or by addition of parS sites showed each Par system to govern the positioning of its own replicon only. Inactivation of c1, c2 and c3 Par systems not only reduced growth rate, generated anucleate cells and compromised viability but influenced processes beyond replicon partition, notably regulation of replication, chromosome condensation and cell size determination. In particular, the absence of the c1 ParA protein altered replication of all three chromosomes, suggesting that the partition system of the main chromosome is a major participant in the

  5. Candidate Essential Genes in Burkholderia cenocepacia J2315 Identified by Genome-Wide TraDIS.

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    Wong, Yee-Chin; Abd El Ghany, Moataz; Naeem, Raeece; Lee, Kok-Wei; Tan, Yung-Chie; Pain, Arnab; Nathan, Sheila

    2016-01-01

    Burkholderia cenocepacia infection often leads to fatal cepacia syndrome in cystic fibrosis patients. However, antibiotic therapy rarely results in complete eradication of the pathogen due to its intrinsic resistance to many clinically available antibiotics. Recent attention has turned to the identification of essential genes as the proteins encoded by these genes may serve as potential targets for development of novel antimicrobials. In this study, we utilized TraDIS (Transposon Directed Insertion-site Sequencing) as a genome-wide screening tool to facilitate the identification of B. cenocepacia genes essential for its growth and viability. A transposon mutant pool consisting of approximately 500,000 mutants was successfully constructed, with more than 400,000 unique transposon insertion sites identified by computational analysis of TraDIS datasets. The saturated library allowed for the identification of 383 genes that were predicted to be essential in B. cenocepacia. We extended the application of TraDIS to identify conditionally essential genes required for in vitro growth and revealed an additional repertoire of 439 genes to be crucial for B. cenocepacia growth under nutrient-depleted conditions. The library of B. cenocepacia mutants can subsequently be subjected to various biologically related conditions to facilitate the discovery of genes involved in niche adaptation as well as pathogenicity and virulence. PMID:27597847

  6. The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients

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    Holden, Matthew T G; Seth-Smith, Helena M B; Crossman, Lisa C;

    2009-01-01

    Bacterial infections of the lungs of cystic fibrosis (CF) patients cause major complications in the treatment of this common genetic disease. Burkholderia cenocepacia infection is particularly problematic since this organism has high levels of antibiotic resistance, making it difficult to eradica...

  7. Protein engineering of a nitrilase from Burkholderia cenocepacia J2315 for efficient and enantioselective production of (R)-o-chloromandelic acid.

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    Wang, Hualei; Gao, Wenyuan; Sun, Huihui; Chen, Lifeng; Zhang, Lujia; Wang, Xuedong; Wei, Dongzhi

    2015-12-01

    The nitrilase-mediated pathway has significant advantages in the production of optically pure aromatic α-hydroxy carboxylic acids. However, low enantioselectivity and activity are observed on hydrolyzing o-chloromandelonitrile to produce optically pure (R)-o-chloromandelic acid. In the present study, a protein engineering approach was successfully used to enhance the performance of nitrilase obtained from Burkholderia cenocepacia strain J2315 (BCJ2315) in hydrolyzing o-chloromandelonitrile. Four hot spots (T49, I113, Y199, and T310) responsible for the enantioselectivity and activity of BCJ2315 were identified by random mutagenesis. An effective double mutant (I113M/Y199G [encoding the replacement of I with M at position 113 and Y with G at position 199]), which demonstrated remarkably enhanced enantioselectivity (99.1% enantiomeric excess [ee] compared to 89.2% ee for the wild type) and relative activity (360% of the wild type), was created by two rounds of site saturation mutagenesis, first at each of the four hot spots and subsequently at position 199 for combination with the selected beneficial mutation I113M. Notably, this mutant also demonstrated dramatically enhanced enantioselectivity and activity toward other mandelonitrile derivatives and, thus, broadened the substrate scope of this nitrilase. Using an ethyl acetate-water (1:9) biphasic system, o-chloromandelonitrile (500 mM) was completely hydrolyzed in 3 h by this mutant with a small amount of biocatalyst (10 g/liter wet cells), resulting in a high concentration of (R)-o-chloromandelic acid with 98.7% ee, to our knowledge the highest ever reported. This result highlights a promising method for industrial production of optically pure (R)-o-chloromandelic acid. Insight into the source of enantioselectivity and activity was gained by homology modeling and molecular docking experiments. PMID:26431972

  8. Burkholderia cenocepacia J2315 escapes to the cytosol and actively subverts autophagy in human macrophages.

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    Al-Khodor, Souhaila; Marshall-Batty, Kimberly; Nair, Vinod; Ding, Li; Greenberg, David E; Fraser, Iain D C

    2014-03-01

    Selective autophagy functions to specifically degrade cellular cargo tagged by ubiquitination, including bacteria. Strains of the Burkholderia cepacia complex (Bcc) are opportunistic pathogens that cause life-threatening infections in patients with cystic fibrosis (CF) and chronic granulomatous disease (CGD). While there is evidence that defective macrophage autophagy in a mouse model of CF can influence B. cenocepacia susceptibility, there have been no comprehensive studies on how this bacterium is sensed and targeted by the host autophagy response in human macrophages. Here, we describe the intracellular life cycle of B. cenocepacia J2315 and its interaction with the autophagy pathway in human cells. Electron and confocal microscopy analyses demonstrate that the invading bacteria interact transiently with the endocytic pathway before escaping to the cytosol. This escape triggers theselective autophagy pathway, and the recruitment of ubiquitin, the ubiquitin-binding adaptors p62 and NDP52 and the autophagosome membrane-associated protein LC3B, to the bacterial vicinity. However, despite recruitment of these key autophagy pathway effectors, B. cenocepacia blocks autophagosome completion and replicates in the host cytosol. We find that a pre-infection increase in cellular autophagy flux can significantly inhibit B. cenocepacia replication and that lower autophagy flux in macrophages from immunocompromised CGD patients could contribute to increased B. cenocepacia susceptibility, identifying autophagy manipulation as a potential therapeutic approach to reduce bacterial burden in B. cenocepacia infections. PMID:24119232

  9. Deciphering the role of RND efflux transporters in Burkholderia cenocepacia.

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    Silvia Bazzini

    Full Text Available Burkholderia cenocepacia J2315 is representative of a highly problematic group of cystic fibrosis (CF pathogens. Eradication of B. cenocepacia is very difficult with the antimicrobial therapy being ineffective due to its high resistance to clinically relevant antimicrobial agents and disinfectants. RND (Resistance-Nodulation-Cell Division efflux pumps are known to be among the mediators of multidrug resistance in gram-negative bacteria. Since the significance of the 16 RND efflux systems present in B. cenocepacia (named RND-1 to -16 has been only partially determined, the aim of this work was to analyze mutants of B. cenocepacia strain J2315 impaired in RND-4 and RND-9 efflux systems, and assess their role in the efflux of toxic compounds. The transcriptomes of mutants deleted individually in RND-4 and RND-9 (named D4 and D9, and a double-mutant in both efflux pumps (named D4-D9, were compared to that of the wild-type B. cenocepacia using microarray analysis. Microarray data were confirmed by qRT-PCR, phenotypic experiments, and by Phenotype MicroArray analysis. The data revealed that RND-4 made a significant contribution to the antibiotic resistance of B. cenocepacia, whereas RND-9 was only marginally involved in this process. Moreover, the double mutant D4-D9 showed a phenotype and an expression profile similar to D4. The microarray data showed that motility and chemotaxis-related genes appeared to be up-regulated in both D4 and D4-D9 strains. In contrast, these gene sets were down-regulated or expressed at levels similar to J2315 in the D9 mutant. Biofilm production was enhanced in all mutants. Overall, these results indicate that in B. cenocepacia RND pumps play a wider role than just in drug resistance, influencing additional phenotypic traits important for pathogenesis.

  10. Assessment of three Resistance-Nodulation-Cell Division drug efflux transporters of Burkholderia cenocepacia in intrinsic antibiotic resistance

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    Venturi Vittorio

    2009-09-01

    Full Text Available Abstract Background Burkholderia cenocepacia are opportunistic Gram-negative bacteria that can cause chronic pulmonary infections in patients with cystic fibrosis. These bacteria demonstrate a high-level of intrinsic antibiotic resistance to most clinically useful antibiotics complicating treatment. We previously identified 14 genes encoding putative Resistance-Nodulation-Cell Division (RND efflux pumps in the genome of B. cenocepacia J2315, but the contribution of these pumps to the intrinsic drug resistance of this bacterium remains unclear. Results To investigate the contribution of efflux pumps to intrinsic drug resistance of B. cenocepacia J2315, we deleted 3 operons encoding the putative RND transporters RND-1, RND-3, and RND-4 containing the genes BCAS0591-BCAS0593, BCAL1674-BCAL1676, and BCAL2822-BCAL2820. Each deletion included the genes encoding the RND transporter itself and those encoding predicted periplasmic proteins and outer membrane pores. In addition, the deletion of rnd-3 also included BCAL1672, encoding a putative TetR regulator. The B. cenocepacia rnd-3 and rnd-4 mutants demonstrated increased sensitivity to inhibitory compounds, suggesting an involvement of these proteins in drug resistance. Moreover, the rnd-3 and rnd-4 mutants demonstrated reduced accumulation of N-acyl homoserine lactones in the growth medium. In contrast, deletion of the rnd-1 operon had no detectable phenotypes under the conditions assayed. Conclusion Two of the three inactivated RND efflux pumps in B. cenocepacia J2315 contribute to the high level of intrinsic resistance of this strain to some antibiotics and other inhibitory compounds. Furthermore, these efflux systems also mediate accumulation in the growth medium of quorum sensing molecules that have been shown to contribute to infection. A systematic study of RND efflux systems in B. cenocepacia is required to provide a full picture of intrinsic antibiotic resistance in this opportunistic

  11. Efflux pump genes of the resistance-nodulation-division family in Burkholderia cenocepacia genome

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    Manina Giulia

    2006-07-01

    Full Text Available Abstract Background Burkholderia cenocepacia is recognized as opportunistic pathogen that can cause lung infections in cystic fibrosis patients. A hallmark of B. cenocepacia infections is the inability to eradicate the organism because of multiple intrinsic antibiotic resistance. As Resistance-Nodulation-Division (RND efflux systems are responsible for much of the intrinsic multidrug resistance in Gram-negative bacteria, this study aims to identify RND genes in the B. cenocepacia genome and start to investigate their involvement into antimicrobial resistance. Results Genome analysis and homology searches revealed 14 open reading frames encoding putative drug efflux pumps belonging to RND family in B. cenocepacia J2315 strain. By reverse transcription (RT-PCR analysis, it was found that orf3, orf9, orf11, and orf13 were expressed at detectable levels, while orf10 appeared to be weakly expressed in B. cenocepacia. Futhermore, orf3 was strongly induced by chloramphenicol. The orf2 conferred resistance to fluoroquinolones, tetraphenylphosphonium, streptomycin, and ethidium bromide when cloned and expressed in Escherichia coli KAM3, a strain lacking the multidrug efflux pump AcrAB. The orf2-overexpressing E. coli also accumulate low concentrations of ethidium bromide, which was restored to wild type level in the presence of CCCP, an energy uncoupler altering the energy of the drug efflux pump. Conclusion The 14 RND pumps gene we have identified in the genome of B. cenocepacia suggest that active efflux could be a major mechanism underlying antimicrobial resistance in this microorganism. We have characterized the ORF2 pump, one of these 14 potential RND efflux systems. Its overexpression in E. coli conferred resistance to several antibiotics and to ethidium bromide but it remains to be determined if this pump play a significant role in the antimicrobial intrinsic resistance of B. cenocepacia. The characterization of antibiotic efflux pumps in B

  12. Development of a multiple-locus variable-number tandem-repeat typing scheme for genetic fingerprinting of Burkholderia cenocepacia and application to nationwide epidemiological analysis.

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    Segonds, Christine; Thouverez, Michelle; Barthe, Antoine; Bossuet-Greif, Nadège; Tisseyre, Lenka; Plésiat, Patrick; Vergnaud, Gilles; Chabanon, Gérard; Pourcel, Christine

    2015-02-01

    Organisms of the Burkholderia cepacia complex are especially important pathogens in cystic fibrosis (CF), with a propensity for patient-to-patient spread and long-term respiratory colonization. B. cenocepacia and Burkholderia multivorans account for the majority of infections in CF, and major epidemic clones have been recognized throughout the world. The aim of the present study was to develop and evaluate a multilocus variable-number tandem-repeat (VNTR) analysis (MLVA) scheme for B. cenocepacia. Potential VNTR loci were identified upon analysis of the annotated genome sequences of B. cenocepacia strains AU1054, J2315, and MCO-3, and 10 of them were selected on the basis of polymorphisms and size. A collection of 100 B. cenocepacia strains, including epidemiologically related and unrelated strains, as well as representatives of the major epidemic lineages, was used to evaluate typeability, epidemiological concordance, and the discriminatory power of MLVA-10 compared with those of pulsed-field gel electrophoresis (PFGE) and multilocus sequence typing (MLST). Longitudinal stability was assessed by testing 39 successive isolates from 14 patients. Typeability ranged from 0.91 to 1, except for that of one marker, which was not amplified in 53% of the B. cenocepacia IIIA strains. The MLVA types were shown to be stable in chronically colonized patients and within outbreak-related strains, with excellent epidemiological concordance. Epidemic and/or globally distributed lineages (epidemic Edinburgh-Toronto electrophoretic type 12 [ET-12], sequence type 32 [ST-32], ST-122, ST-234, and ST-241) were successfully identified. Conversely, the discriminatory power of MLVA was lower than that of PFGE or MLST, although PFGE variations within the epidemic lineages sometimes masked their genetic relatedness. In conclusion, MLVA represents a promising cost-effective first-line tool in B. cenocepacia surveillance.

  13. Charakterisierung des Burkholderia cenocepacia Aquaglyceroporins

    OpenAIRE

    Wree, Dorothea

    2010-01-01

    In der vorliegenden Arbeit wurde ein Aquaglyceroporin des Krankenhausproblemkeims Burkholderia cenocepacia, BccGlpF, charakterisiert. Unter besonderer Beobachtung stand die Struktur-Funktionsbeziehung der eigentlich kochkonservierten NPA-Motive.

  14. Sessile nanofluid droplet drying.

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    Zhong, Xin; Crivoi, Alexandru; Duan, Fei

    2015-03-01

    Nanofluid droplet evaporation has gained much audience nowadays due to its wide applications in painting, coating, surface patterning, particle deposition, etc. This paper reviews the drying progress and deposition formation from the evaporative sessile droplets with the suspended insoluble solutes, especially nanoparticles. The main content covers the evaporation fundamental, the particle self-assembly, and deposition patterns in sessile nanofluid droplet. Both experimental and theoretical studies are presented. The effects of the type, concentration and size of nanoparticles on the spreading and evaporative dynamics are elucidated at first, serving the basis for the understanding of particle motion and deposition process which are introduced afterward. Stressing on particle assembly and production of desirable residue patterns, we express abundant experimental interventions, various types of deposits, and the effects on nanoparticle deposition. The review ends with the introduction of theoretical investigations, including the Navier-Stokes equations in terms of solutions, the Diffusion Limited Aggregation approach, the Kinetic Monte Carlo method, and the Dynamical Density Functional Theory. Nanoparticles have shown great influences in spreading, evaporation rate, evaporation regime, fluid flow and pattern formation of sessile droplets. Under different experimental conditions, various deposition patterns can be formed. The existing theoretical approaches are able to predict fluid dynamics, particle motion and deposition patterns in the particular cases. On the basis of further understanding of the effects of fluid dynamics and particle motion, the desirable patterns can be obtained with appropriate experimental regulations. PMID:25578408

  15. Sessile Rayleigh drop instability

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    Steen, Paul; Bostwick, Josh

    2012-11-01

    Rayleigh (1879) determined the mode shapes and frequencies of the inviscid motion of a free drop held by surface tension. We study the inviscid motions of a sessile Rayleigh drop - a drop which rests on a planar solid and whose contact-line is free to move. Linear stability analysis gives the modes and frequencies of the droplet motions. In this talk, we focus on the ``walking instability,'' an unstable mode wherein the drop moves across a planar substrate in an inviscid rocking-like motion. The mode shape is non-axisymmetric. Although the experimental literature has hinted at such a mode, this is the first prediction from linear stability analysis, as far as we are aware. The ``walking instability'' of the drop converts energy stored in the liquid shape into the energy of liquid motion - which represents a heretofore unknown pathway of energy conversion of potentially wide significance for a broad range of applications.

  16. Mechanically-Excited Sessile Drops

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    Chang, Chun-Ti; Bostwick, Joshua; Daniel, Susan; Steen, Paul

    2010-11-01

    The volume and contact-line mobility of a sessile drop determine the frequency response of the drop to mechanical excitation. A useful signature of the drop is its response to a sweep of frequency. At particular frequencies the drop exhibits standing wave patterns of different mode numbers and/or azimuthal, spinning motion. We report observations of the spectrum of standing wave patterns and compare to predictions of a linear stability theory. On the side of application, the results suggest how to tune the pinning-unpinning of a sessile drop in order to maximize its translation.

  17. Excited Sessile Drops Dance Harmonically

    OpenAIRE

    Chang, Chun-Ti; Daniel, Susan; Steen, Paul H.

    2013-01-01

    In our fluid dynamics video, we demonstrate our method of visualizing and identifying various mode shapes of mechanically oscillated sessile drops. By placing metal mesh under an oscillating drop and projecting light from below, the drop's shape is visualized by the visually deformed mesh pattern seen in the top view. The observed modes are subsequently identified by their number of layers and sectors. An alternative identification associates them with spherical harmonics, as demonstrated in ...

  18. Burkholderia cenocepacia zinc metalloproteases influence resistance to antimicrobial peptides.

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    Kooi, Cora; Sokol, Pamela A

    2009-09-01

    Burkholderia cenocepacia secretes two zinc-dependent metalloproteases, designated ZmpA and ZmpB. Previously, ZmpA and ZmpB have been shown to cleave several proteins important in host defence. In this study, the ability of ZmpA and ZmpB to digest and inactivate antimicrobial peptides involved in innate immunity was examined. ZmpB but not ZmpA cleaved beta-defensin-1. ZmpA but not ZmpB cleaved the cathelicidin LL-37. Both enzymes cleaved elafin and secretory leukocyte inhibitor, which are antimicrobial peptides as well as neutrophil elastase inhibitors. Both ZmpA and ZmpB cleaved protamine, a fish antimicrobial peptide, and a zmpA zmpB mutant was more sensitive to protamine killing than the parental strain. ZmpA or ZmpB cleavage of elafin inactivated its anti-protease activity. The effect of ZmpA and ZmpB on the neutrophil proteases elastase and cathepsin G was also examined but neither enzyme was active against these host proteases. These studies suggest that ZmpA and ZmpB may influence the resistance of B. cenocepacia to host antimicrobial peptides as well as alter the host protease/anti-protease balance in chronic respiratory infections.

  19. Draft Genome Sequence of Burkholderia cenocepacia Strain CEIB S5-2, a Methyl Parathion- and p-Nitrophenol-Degrading Bacterium, Isolated from Agricultural Soils in Morelos, Mexico

    OpenAIRE

    Martínez-Ocampo, Fernando; Fernández López, Maikel Gilberto; Lozano-Aguirre Beltrán, Luis Fernando; Popoca-Ursino, Elida Carolina; Ortiz-Hernández, M. Laura; Sánchez-Salinas, Enrique; Ramos Quintana, Fernando; Villalobos-López, Miguel A.; Dantán-González, Edgar

    2016-01-01

    Burkholderia cenocepacia is an opportunistic pathogen that belongs to Burkholderia cepacia complex (BCC). Burkholderia cenocepacia strain CEIB S5-2 was isolated from agricultural soils in Morelos, Mexico, and previously has shown its abilities for bioremediation. In this study, we report the draft genome sequence of Burkholderia cenocepacia strain CEIB S5-2.

  20. Draft Genome Sequence of Burkholderia cenocepacia Strain CEIB S5-2, a Methyl Parathion- and p-Nitrophenol-Degrading Bacterium, Isolated from Agricultural Soils in Morelos, Mexico

    Science.gov (United States)

    Martínez-Ocampo, Fernando; Fernández López, Maikel Gilberto; Lozano-Aguirre Beltrán, Luis Fernando; Popoca-Ursino, Elida Carolina; Ortiz-Hernández, M. Laura; Sánchez-Salinas, Enrique; Ramos Quintana, Fernando; Villalobos-López, Miguel A.

    2016-01-01

    Burkholderia cenocepacia is an opportunistic pathogen that belongs to Burkholderia cepacia complex (BCC). Burkholderia cenocepacia strain CEIB S5-2 was isolated from agricultural soils in Morelos, Mexico, and previously has shown its abilities for bioremediation. In this study, we report the draft genome sequence of Burkholderia cenocepacia strain CEIB S5-2. PMID:27125479

  1. Identification of Burkholderia cenocepacia strain H111 virulence factors using nonmammalian infection hosts

    DEFF Research Database (Denmark)

    Schwager, Stephan; Agnoli, Kirsty; Köthe, Manuela;

    2013-01-01

    Burkholderia cenocepacia H111, a strain isolated from a cystic fibrosis patient, has been shown to effectively kill the nematode Caenorhabditis elegans. We used the C. elegans model of infection to screen a mini-Tn5 mutant library of B. cenocepacia H111 for attenuated virulence....... Of the approximately 5,500 B. cenocepacia H111 random mini-Tn5 insertion mutants that were screened, 22 showed attenuated virulence in C. elegans. Except for the quorum-sensing regulator cepR, none of the mutated genes coded for the biosynthesis of classical virulence factors such as extracellular proteases...... or siderophores. Instead, the mutants contained insertions in metabolic and regulatory genes. Mutants attenuated in virulence in the C. elegans infection model were also tested in the Drosophila melanogaster pricking model, and those also attenuated in this model were further tested in Galleria mellonella. Six...

  2. Clinafloxacin for Treatment of Burkholderia cenocepacia Infection in a Cystic Fibrosis Patient.

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    Balwan, Akshu; Nicolau, David P; Wungwattana, Minkey; Zuckerman, Jonathan B; Waters, Valerie

    2016-01-01

    Respiratory infection with Burkholderia cenocepacia is associated with accelerated decline in lung function and increased mortality in cystic fibrosis (CF) patients (A. M. Jones, M. E. Dodd, J. R. W. Govan, V. Barcus, C. J. Doherty, J. Morris, and A. K. Webb, Thorax 59:948-951, 2004, http://dx.doi.org/10.1136/thx.2003.017210). B. cenocepacia often possesses innate resistance to multiple antimicrobial classes, making eradication uncommon in established infection (P. B. Davis, Am J Respir Crit Care Med 173:475-482, 2006, http://dx.doi.org/10.1164/rccm.200505-840OE). We report the use of clinafloxacin in a CF patient with advanced B. cenocepacia infection, present pharmacokinetic (PK) data, and discuss the potential therapeutic role of clinafloxacin in patients with this condition.

  3. Sessile droplet evaporation on superheated superhydrophobic surfaces

    CERN Document Server

    Hays, Robb C; Maynes, Daniel; Webb, Brent W

    2013-01-01

    This fluid dynamics video depicts the evaporation of sessile water droplets placed on heated superhydrophobic (SH) surfaces of varying cavity fraction, F_c, and surface temperature, T_s, above the saturation temperature, T_sat. Images were captured at 10,000 FPS and are played back at 30 FPS in this video. Teflon-coated silicon surfaces of F_c = 0, 0.5, 0.8, and 0.95 were used for these experiments. T_s ranging from 110{\\deg}C to 210{\\deg}C were studied. The video clips show how the boiling behavior of sessile droplets is altered with changes in surface microstructure. Quantitative results from heat transfer rate experiments conducted by the authors are briefly discussed near the end of the video.

  4. FUNGAL ASSOCIATION WITH SESSILE MARINE INVERTEBRATES

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    Oded eYarden

    2014-05-01

    Full Text Available The presence and association of fungi with sessile marine animals such as coral and sponges has been well established, yet information on the extent of diversity of the associated fungi is still in its infancy. Culture- as well as metagenomic- and transcriptomic-based analyses have shown that fungal presence in association with these animals can be dynamic and can include core residents as well as shifts in fungal communities. Evidence for detrimental and beneficial interactions between fungi and their marine hosts is accumulating and current challenges include the elucidation of the chemical and cellular crosstalk between fungi and their associates within the holobionts. The ecological function of fungi in association with sessile marine animals is complex and is founded on a combination of factors such as fungal origin, host health, environmental conditions and the presence of other resident or invasive microorganisms in the host. Based on evidence from the much more studied terrestrial systems, the evaluation of marine animal-fungal symbioses under varying environmental conditions may well prove to be critical in predicting ecosystem response to global change, including effects on the health of sessile marine animals.

  5. Antimicrobial Properties of an Oxidizer Produced by Burkholderia cenocepacia P525

    Science.gov (United States)

    A compound with both oxidizing properties and antibiotic properties was extracted and purified from broth cultures of Burkholderia cenocepacia strain P525. A four step purification procedure was used to increase its specific activity ~ 400 fold and to yield a HPLC- UV chromatogram containing a sing...

  6. Eradication and phenotypic tolerance of Burkholderia cenocepacia biofilms exposed to atmospheric pressure non-thermal plasma.

    Science.gov (United States)

    Alshraiedeh, Nida H; Higginbotham, Sarah; Flynn, Padrig B; Alkawareek, Mahmoud Y; Tunney, Michael M; Gorman, Sean P; Graham, William G; Gilmore, Brendan F

    2016-06-01

    Chronic lung infection with bacteria from the Burkholderia cepacia complex (BCC), and in particular B. cenocepacia, is associated with significant morbidity and mortality in patients with cystic fibrosis (CF). B. cenocepacia can spread from person to person and exhibits intrinsic broad-spectrum antibiotic resistance. Recently, atmospheric pressure non-thermal plasmas (APNTPs) have gained increasing attention as a novel approach to the prevention and treatment of a variety of hospital-acquired infections. In this study, we evaluated an in-house-designed kHz-driven plasma source for the treatment of biofilms of a number of clinical CF B. cenocepacia isolates. The results demonstrated that APNTP is an effective and efficient tool for the eradication of B. cenocepacia biofilms but that efficacy is highly variable across different isolates. Determination of phenotypic differences between isolates in an attempt to understand variability in plasma tolerance revealed that isolates which are highly tolerant to APNTP typically produce biofilms of greater biomass than their more sensitive counterparts. This indicates a potential role for biofilm matrix components in biofilm tolerance to APNTP exposure. Furthermore, significant isolate-dependent differences in catalase activity in planktonic bacteria positively correlated with phenotypic resistance to APNTP by isolates grown in biofilms. PMID:27179816

  7. Genome Sequence of Burkholderia cenocepacia H111, a Cystic Fibrosis Airway Isolate

    OpenAIRE

    Carlier, A; Agnoli, K; Pessi, G; Suppiger, A; Jenul, C; Schmid, N; Tummler, B.; Pinto-Carbo, M; Eberl, L

    2014-01-01

    The Burkholderia cepacia complex (BCC) is a group of related bacterial species that are commonly isolated from environmental samples. Members of the BCC can cause respiratory infections in cystic fibrosis patients and immunocompromised individuals. We report here the genome sequence of Burkholderia cenocepacia H111, a well-studied model strain of the BCC.

  8. A Complete Lipopolysaccharide Inner Core Oligosaccharide Is Required for Resistance of Burkholderia cenocepacia to Antimicrobial Peptides and Bacterial Survival In Vivo

    OpenAIRE

    Loutet, Slade A.; Flannagan, Ronald S.; Kooi, Cora; Sokol, Pamela A.; Valvano, Miguel A

    2006-01-01

    Burkholderia cenocepacia is an important opportunistic pathogen of patients with cystic fibrosis. This bacterium is inherently resistant to a wide range of antimicrobial agents, including high concentrations of antimicrobial peptides. We hypothesized that the lipopolysaccharide (LPS) of B. cenocepacia is important for both virulence and resistance to antimicrobial peptides. We identified hldA and hldD genes in B. cenocepacia strain K56-2. These two genes encode enzymes involved in the modific...

  9. Structural stability of Burkholderia cenocepacia biofilms is reliant on eDNA structure and presence of a bacterial nucleic acid binding protein.

    Directory of Open Access Journals (Sweden)

    Laura A Novotny

    Full Text Available Cystic fibrosis (CF is the most common lethal inherited genetic disorder affection Caucasians. Even with medical advances, CF is life-shortening with patients typically surviving only to age 38. Infection of the CF lung by Burkholderia cenocepacia presents exceptional challenges to medical management of these patients as clinically this microbe is resistant to virtually all antibiotics, is highly transmissible and infection of CF patients with this microbe renders them ineligible for lung transplant, often the last lifesaving option. Here we have targeted two abundant components of the B. cenocepacia biofilm for immune intervention: extracellular DNA and DNABII proteins, the latter of which are bacterial nucleic acid binding proteins. Treatment of B. cenocepacia biofilms with antiserum directed at one of these DNABII proteins (integration host factor or IHF resulted in significant disruption of the biofilm. Moreover, when anti-IHF mediated destabilization of a B. cenocepacia biofilm was combined with exposure to traditional antibiotics, B. cenocepacia resident within the biofilm and thereby typically highly resistant to the action of antibiotics, were now rendered susceptible to killing. Pre-incubation of B. cenocepacia with anti-IHF serum prior to exposure to murine CF macrophages, which are normally unable to effectively degrade ingested B. cenocepacia, resulted in a statistically significant increase in killing of phagocytized B. cenocepacia. Collectively, these findings support further development of strategies that target DNABII proteins as a novel approach for treatment of CF patients, particularly those whose lungs are infected with B. cenocepacia.

  10. Electric field induced deformation of sessile drops

    Science.gov (United States)

    Corson, Lindsey; Tsakonas, Costas; Duffy, Brian; Mottram, Nigel; Brown, Carl; Wilson, Stephen

    2014-11-01

    The ability to control the shape of a drop with the application of an electric field has been exploited for many technological applications including measuring surface tension, producing an optical display device, and optimising the optical properties of microlenses. In this work we consider, both theoretically and experimentally, the deformation of pinned sessile drops with contact angles close to either 0° or 90° resting on the lower substrate inside a parallel plate capacitor due to an A.C. electric field. Using both asymptotic and numerical approaches we obtain predictive equations for the static and dynamic drop shape deformations as functions of the key experimental parameters (drop size, capacitor plate separation, electric field magnitude and contact angle). The asymptotic results agree well with the experimental results for a range of liquids. We gratefully acknowledge the financial support of EPSRC via research Grants EP/J009865 and EP/J009873.

  11. Sessile Drop Evaporation and Leidenfrost Phenomenon

    Directory of Open Access Journals (Sweden)

    A. K. Mozumder

    2010-01-01

    Full Text Available Problem statement: Quenching and cooling are important process in manufacturing industry for controlling the mechanical properties of materials, where evaporation is a vital mode of heat transfer. Approach: This study experimentally investigated the evaporation of sessile drop for four different heated surfaces of Aluminum, Brass, Copper and Mild steel with a combination of four different liquids as Methanol, Ethanol, Water and NaCl solution. The time of evaporation for the droplet on the hot metallic surface was measured and compared with a proposed correlation as well. With the time temperature plot of these experimental data, the Leidenfrost phenomena had been elucidated. In the pool boiling curve for liquid, just after the transition boiling region and before the film boiling region, the heat transfer approaches its minimum value. The corresponding temperature of this minimum value was termed as the Leidenfrost temperature and the phenomenon is known as Leidenfrost phenomena. According to the experimental data, the Leidenfrost temperature was within a range of 150-200°C for all the experimental conditions. Results: This revealed that Leidenfrost temperature was independent of thermo-physical properties of solid and liquid. Sessile drop evaporation time was the maximum for water, then decreases gradually for Nacl solution, methanol and was the minimum for ethanol for a particular solid material. On the other hand, this time was the highest for copper and the lowest for mild steel for a specific liquid. Conclusion: The experimental data for the evaporation time fairly agree with the proposed correlation within a certain range. The collected time and temperature data may be used as a good data bank for the researchers.

  12. Cyanide toxicity to Burkholderia cenocepacia is modulated by polymicrobial communities and environmental factors

    Directory of Open Access Journals (Sweden)

    Steve P. Bernier

    2016-05-01

    Full Text Available Microbes within polymicrobial communities can establish positive and negative interactions that have the potential to influence the overall behaviour of the community. Pseudomonas aeruginosa and species of the Burkholderia cepacia complex (Bcc can co-exist in the lower airways, however several studies have shown that P. aeruginosa can effectively kill the Bcc in vitro, for which hydrogen cyanide was recently proposed to play a critical role. Here we show that modification of the environment (i.e. culture medium, long-term genetic adaptation of P. aeruginosa to the cystic fibrosis (CF lung, or the addition of another bacterial species to the community can alter the sensitivity of Burkholderia cenocepacia to P. aeruginosa toxins. We specifically demonstrate that undefined rich media leads to higher susceptibility of B. cenocepacia to P. aeruginosa toxins like cyanide as compared to a synthetic medium (SCFM, that mimics the CF lung nutritional content. Overall, our study shows that the polymicrobial environment can have profound effects on negative interactions mediated by P. aeruginosa against B. cenocepacia. In fact, evolved P. aeruginosa or the presence of other species such as Staphylococcus aureus can directly abolish the direct competition mediated by cyanide and consequently maintaining a higher level of species diversity within the community.

  13. Cyanide Toxicity to Burkholderia cenocepacia Is Modulated by Polymicrobial Communities and Environmental Factors.

    Science.gov (United States)

    Bernier, Steve P; Workentine, Matthew L; Li, Xiang; Magarvey, Nathan A; O'Toole, George A; Surette, Michael G

    2016-01-01

    Microbes within polymicrobial communities can establish positive and negative interactions that have the potential to influence the overall behavior of the community. Pseudomonas aeruginosa and species of the Burkholderia cepacia complex (Bcc) can co-exist in the lower airways, however several studies have shown that P. aeruginosa can effectively kill the Bcc in vitro, for which hydrogen cyanide (HCN) was recently proposed to play a critical role. Here we show that modification of the environment (i.e., culture medium), long-term genetic adaptation of P. aeruginosa to the cystic fibrosis (CF) lung, or the addition of another bacterial species to the community can alter the sensitivity of Burkholderia cenocepacia to P. aeruginosa toxins. We specifically demonstrate that undefined rich media leads to higher susceptibility of B. cenocepacia to P. aeruginosa toxins like cyanide as compared to a synthetic medium (SCFM), that mimics the CF lung nutritional content. Overall, our study shows that the polymicrobial environment can have profound effects on negative interactions mediated by P. aeruginosa against B. cenocepacia. In fact, evolved P. aeruginosa or the presence of other species such as Staphylococcus aureus can directly abolish the direct competition mediated by cyanide and consequently maintaining a higher level of species diversity within the community. PMID:27242743

  14. Discovery of new diketopiperazines inhibiting Burkholderia cenocepacia quorum sensing in vitro and in vivo.

    Science.gov (United States)

    Scoffone, Viola C; Chiarelli, Laurent R; Makarov, Vadim; Brackman, Gilles; Israyilova, Aygun; Azzalin, Alberto; Forneris, Federico; Riabova, Olga; Savina, Svetlana; Coenye, Tom; Riccardi, Giovanna; Buroni, Silvia

    2016-01-01

    Burkholderia cenocepacia, an opportunistic respiratory pathogen particularly relevant for cystic fibrosis patients, is difficult to eradicate due to its high level of resistance to most clinically relevant antimicrobials. Consequently, the discovery of new antimicrobials as well as molecules capable of inhibiting its virulence is mandatory. In this regard quorum sensing (QS) represents a good target for anti-virulence therapies, as it has been linked to biofilm formation and is important for the production of several virulence factors, including proteases and siderophores. Here, we report the discovery of new diketopiperazine inhibitors of the B. cenocepacia acyl homoserine lactone synthase CepI, and report their anti-virulence properties. Out of ten different compounds assayed against recombinant CepI, four were effective inhibitors, with IC50 values in the micromolar range. The best compounds interfered with protease and siderophore production, as well as with biofilm formation, and showed good in vivo activity in a Caenorhabditis elegans infection model. These molecules were also tested in human cells and showed very low toxicity. Therefore, they could be considered for in vivo combined treatments with established or novel antimicrobials, to improve the current therapeutic strategies against B. cenocepacia. PMID:27580679

  15. Discovery of new diketopiperazines inhibiting Burkholderia cenocepacia quorum sensing in vitro and in vivo

    Science.gov (United States)

    Scoffone, Viola C.; Chiarelli, Laurent R.; Makarov, Vadim; Brackman, Gilles; Israyilova, Aygun; Azzalin, Alberto; Forneris, Federico; Riabova, Olga; Savina, Svetlana; Coenye, Tom; Riccardi, Giovanna; Buroni, Silvia

    2016-01-01

    Burkholderia cenocepacia, an opportunistic respiratory pathogen particularly relevant for cystic fibrosis patients, is difficult to eradicate due to its high level of resistance to most clinically relevant antimicrobials. Consequently, the discovery of new antimicrobials as well as molecules capable of inhibiting its virulence is mandatory. In this regard quorum sensing (QS) represents a good target for anti-virulence therapies, as it has been linked to biofilm formation and is important for the production of several virulence factors, including proteases and siderophores. Here, we report the discovery of new diketopiperazine inhibitors of the B. cenocepacia acyl homoserine lactone synthase CepI, and report their anti-virulence properties. Out of ten different compounds assayed against recombinant CepI, four were effective inhibitors, with IC50 values in the micromolar range. The best compounds interfered with protease and siderophore production, as well as with biofilm formation, and showed good in vivo activity in a Caenorhabditis elegans infection model. These molecules were also tested in human cells and showed very low toxicity. Therefore, they could be considered for in vivo combined treatments with established or novel antimicrobials, to improve the current therapeutic strategies against B. cenocepacia. PMID:27580679

  16. Phenylalanine induces Burkholderia cenocepacia phenylacetic acid catabolism through degradation to phenylacetyl-CoA in synthetic cystic fibrosis sputum medium.

    Science.gov (United States)

    Yudistira, Harry; McClarty, Leigh; Bloodworth, Ruhi A M; Hammond, Sydney A; Butcher, Haley; Mark, Brian L; Cardona, Silvia T

    2011-09-01

    Synthetic cystic fibrosis sputum medium (SCFM) is rich in amino acids and supports robust growth of Burkholderia cenocepacia, a member of the Burkholderia cepacia complex (Bcc). Previous work demonstrated that B. cenocepacia phenylacetic acid (PA) catabolic genes are up-regulated during growth in SCFM and are required for full virulence in a Caenorhabditis elegans host model. In this work, we investigated the role of phenylalanine, one of the aromatic amino acids present in SCFM, as an inducer of the PA catabolic pathway. Phenylalanine degradation intermediates were used as sole carbon sources for growth and gene reporter experiments. In addition to phenylalanine and PA, phenylethylamine, phenylpyruvate, and 2-phenylacetamide were usable as sole carbon sources by wild type B. cenocepacia K56-2, but not by a PA catabolism-defective mutant. EMSA analysis showed that the binding of PaaR, the negative regulator protein of B. cenocepacia PA catabolism, to PA regulatory DNA could only be relieved by phenylacetyl-Coenzyme A (PA-CoA), but not by any of the putative phenylalanine degradation intermediates. Taken together, our results show that in B. cenocepacia, phenylalanine is catabolized to PA and induces PA catabolism through PA activation to PA-CoA. Thus, PaaR shares the same inducer with PaaX, the regulator of PA catabolism in Escherichia coli, despite belonging to a different protein family.

  17. Embryology of a planktonic tunicate reveals traces of sessility

    OpenAIRE

    Stach, Thomas; Winter, Jonas; Bouquet, Jean-Marie; Chourrout, Daniel; Schnabel, Ralf

    2008-01-01

    A key problem in understanding deuterostome evolution has been the origin of the chordate body plan. A biphasic life cycle with a sessile adult and a free-swimming larva is traditionally considered ancestral in chordates with subsequent neotenic loss of the sessile adult stage. Molecular phylogenies challenged this view, suggesting that the primitive life cycle in chordates was entirely free-living as in modern day larvaceans. Here, we report the precise cell lineage and fate map in the norma...

  18. Effect of nitrofurans and NO generators on biofilm formation by Pseudomonas aeruginosa PAO1 and Burkholderia cenocepacia 370.

    Science.gov (United States)

    Zaitseva, Julia; Granik, Vladimir; Belik, Alexandr; Koksharova, Olga; Khmel, Inessa

    2009-06-01

    Antibacterial drugs in the nitrofuran series, such as nitrofurazone, furazidin, nitrofurantoin and nifuroxazide, as well as the nitric oxide generators sodium nitroprusside and isosorbide mononitrate in concentrations that do not suppress bacterial growth, were shown to increase the capacity of pathogenic bacteria Pseudomonas aeruginosa PAO1 and Burkholderia cenocepacia 370 to form biofilms. At 25-100microg/ml, nitrofurans 2-2.5-fold enhanced biofilm formation of P. aeruginosa PAO1, and NO donors 3-6-fold. For B. cenocepacia 370, the enhancement was 2-5-fold (nitrofurans) and 4.5-fold (sodium nitroprusside), respectively. PMID:19460431

  19. Strains of Burkholderia cenocepacia genomovar IIIA possessing the cblA gene that are distinct from ET12.

    Science.gov (United States)

    Turton, Jane F; O'Brien, Emily; Megson, Brian; Kaufmann, Mary E; Pitt, Tyrone L

    2009-05-01

    Three strains of Burkholderia cenocepacia genomovar IIIA that were polymerase chain reaction positive for cblA, bcrA, and the epidemic strain marker, but were distinct from representatives of ET12 by pulsed-field gel electrophoresis, are described. One of these strains was shown to express cable pili by electron microscopy.

  20. Surface tension of molten tin investigated with sessile drop method

    Institute of Scientific and Technical Information of China (English)

    LI Jing; YUAN Zhang-fu; FAN Jian-feng; KE Jia-jun

    2005-01-01

    The surface tension of molten tin was determined by a set of self-developed digital equipment with sessile drop method at oxygen partial pressure of 1.0 × 10-6 MPa under different temperatures, and the dependence of surface tension of molten tin on temperature was also discussed. The emphasis was placed on the comparison of surface tension of the same molten tin sample measured by using different equipments with sessile drop method. Results of the comparison indicate that the measurement results with sessile drop method under the approximate experimental conditions are coincident, and the self-developed digital equipment for surface tension measurement has higher stability and accuracy. The relationships of surface tension of molten tin and its temperature coefficient with temperature and oxygen partial pressure were also elucidated from the thermodynamic equilibrium analysis.

  1. Identification of functions linking quorum sensing with biofilm formation in Burkholderia cenocepacia H111.

    Science.gov (United States)

    Inhülsen, Silja; Aguilar, Claudio; Schmid, Nadine; Suppiger, Angela; Riedel, Kathrin; Eberl, Leo

    2012-06-01

    Burkholderia cenocepacia has emerged as an important pathogen for patients suffering from cystic fibrosis (CF). Previous work has shown that this organism employs the CepIR quorum-sensing (QS) system to control the expression of virulence factors as well as the formation of biofilms. To date, however, very little is known about the QS-regulated virulence factors and virtually nothing about the factors that link QS and biofilm formation. Here, we have employed a combined transcriptomic and proteomic approach to precisely define the QS regulon in our model strain B. cenocepacia H111, a CF isolate. Among the identified CepR-activated loci, three were analyzed in better detail for their roles in biofilm development: (i) a gene cluster coding for the BclACB lectins, (ii) the large surface protein BapA, and (iii) a type I pilus. The analysis of defined mutants revealed that BapA plays a major role in biofilm formation on abiotic surfaces while inactivation of the type I pilus showed little effect both in a static microtitre dish-based biofilm assay and in flow-through cells. Inactivation of the bclACB lectin genes resulted in biofilms containing hollow microcolonies, suggesting that the lectins are important for biofilm structural development. PMID:22950027

  2. Surface Patterns of Parametrically-Excited Sessile Drops

    Science.gov (United States)

    Chang, Chun-Ti; Bostwick, Joshua; Daniel, Susan; Steen, Paul

    2012-11-01

    A mechanically-excited sessile water drop exhibits surface patterns that vary with driving amplitude and frequency. At small amplitudes, drops exhibit axisymmetric wave patterns. At sufficiently large amplitudes and at particular frequencies, symmetry breaks and there appear subharmonically-resonating sectoral and tesseral mode shapes. We report observations from experiment and compare to results from modeling the parametric excitation of the drops. The modeling uses the spectrum and eigenmodes from a linear stability analysis of the inviscid sessile Rayleigh drop with moving/pinned contact-line. Manipulating drop motion can be important to a variety of applications.

  3. The Crystal Structure of Burkholderia cenocepacia DfsA Provides Insights into Substrate Recognition and Quorum Sensing Fatty Acid Biosynthesis.

    Science.gov (United States)

    Spadaro, Francesca; Scoffone, Viola C; Chiarelli, Laurent R; Fumagalli, Marco; Buroni, Silvia; Riccardi, Giovanna; Forneris, Federico

    2016-06-14

    Burkholderia cenocepacia is a major concern among respiratory tract infections in cystic fibrosis patients. This pathogen is particularly difficult to treat because of its high level of resistance to the clinically relevant antimicrobial agents. In B. cenocepacia, the quorum sensing cell-cell communication system is involved in different processes that are important for bacterial virulence, such as biofilm formation and protease and siderophore production. Targeting the enzymes involved in this process represents a promising therapeutic approach. With the aim of finding effective quorum sensing inhibitors, we have determined the three-dimensional structure of B. cenocepacia diffusible factor synthase A, DfsA. This bifunctional crotonase (dehydratase/thioesterase) produces the characteristic quorum sensing molecule of B. cenocepacia, cis-2-dodecenoic acid or BDSF, starting from 3-hydroxydodecanoyl-acyl carrier protein. Unexpectedly, the crystal structure revealed the presence of a lipid molecule in the catalytic site of the enzyme, which was identified as dodecanoic acid. Our biochemical characterization shows that DfsA is able to use dodecanoyl-acyl carrier protein as a substrate, demonstrating that dodecanoic acid, the product of this reaction, is released very slowly from the DfsA active site, therefore acting as a DfsA inhibitor. This molecule shows an unprecedented conformational arrangement inside the DfsA active site. In contrast with previous hypotheses, our data illustrate how DfsA and closely related homologous enzymes can recognize long hydrophobic substrates without large conformational changes or assistance by additional regulator molecules. The elucidation of the substrate binding mode in DfsA provides the starting point for structure-based drug discovery studies targeting B. cenocepacia quorum sensing-assisted virulence. PMID:27198181

  4. Comparative analysis of two phenotypically-similar but genomically-distinct Burkholderia cenocepacia-specific bacteriophages

    Directory of Open Access Journals (Sweden)

    Lynch Karlene H

    2012-06-01

    Full Text Available Abstract Background Genomic analysis of bacteriophages infecting the Burkholderia cepacia complex (BCC is an important preliminary step in the development of a phage therapy protocol for these opportunistic pathogens. The objective of this study was to characterize KL1 (vB_BceS_KL1 and AH2 (vB_BceS_AH2, two novel Burkholderia cenocepacia-specific siphoviruses isolated from environmental samples. Results KL1 and AH2 exhibit several unique phenotypic similarities: they infect the same B. cenocepacia strains, they require prolonged incubation at 30°C for the formation of plaques at low titres, and they do not form plaques at similar titres following incubation at 37°C. However, despite these similarities, we have determined using whole-genome pyrosequencing that these phages show minimal relatedness to one another. The KL1 genome is 42,832 base pairs (bp in length and is most closely related to Pseudomonas phage 73 (PA73. In contrast, the AH2 genome is 58,065 bp in length and is most closely related to Burkholderia phage BcepNazgul. Using both BLASTP and HHpred analysis, we have identified and analyzed the putative virion morphogenesis, lysis, DNA binding, and MazG proteins of these two phages. Notably, MazG homologs identified in cyanophages have been predicted to facilitate infection of stationary phase cells and may contribute to the unique plaque phenotype of KL1 and AH2. Conclusions The nearly indistinguishable phenotypes but distinct genomes of KL1 and AH2 provide further evidence of both vast diversity and convergent evolution in the BCC-specific phage population.

  5. Burkholderia cenocepacia Differential Gene Expression during Host–Pathogen Interactions and Adaptation to the Host Environment

    Science.gov (United States)

    O’Grady, Eoin P.; Sokol, Pamela A.

    2011-01-01

    Members of the Burkholderia cepacia complex (Bcc) are important in medical, biotechnological, and agricultural disciplines. These bacteria naturally occur in soil and water environments and have adapted to survive in association with plants and animals including humans. All Bcc species are opportunistic pathogens including Burkholderia cenocepacia that causes infections in cystic fibrosis and chronic granulomatous disease patients. The adaptation of B. cenocepacia to the host environment was assessed in a rat chronic respiratory infection model and compared to that of high cell-density in vitro grown cultures using transcriptomics. The distribution of genes differentially expressed on chromosomes 1, 2, and 3 was relatively proportional to the size of each genomic element, whereas the proportion of plasmid-encoded genes differentially expressed was much higher relative to its size and most genes were induced in vivo. The majority of genes encoding known virulence factors, components of types II and III secretion systems and chromosome 2-encoded type IV secretion system were similarly expressed between in vitro and in vivo environments. Lower expression in vivo was detected for genes encoding N-acyl-homoserine lactone synthase CepI, orphan LuxR homolog CepR2, zinc metalloproteases ZmpA and ZmpB, LysR-type transcriptional regulator ShvR, nematocidal protein AidA, and genes associated with flagellar motility, Flp type pilus formation, and type VI secretion. Plasmid-encoded type IV secretion genes were markedly induced in vivo. Additional genes induced in vivo included genes predicted to be involved in osmotic stress adaptation or intracellular survival, metal ion, and nutrient transport, as well as those encoding outer membrane proteins. Genes identified in this study are potentially important for virulence during host–pathogen interactions and may be associated with survival and adaptation to the host environment during chronic lung infections. PMID:22919581

  6. Dynamic electrowetting of sessile drops on soft surfaces

    CERN Document Server

    Dey, Ranabir; DasGupta, Sunando; Chakraborty, Suman

    2014-01-01

    Electrically-mediated dynamic wetting behaviour of sessile liquid drops on dielectric films is governed by the combined interplay of the wetting line friction and the internal viscous dissipation. We show here that such classical description of the electrospreading phenomenon, as prevalent in the contemporary literature, fails to address the electro-capillarity induced dynamic wetting of sessile drops on soft dielectrics. We first delineate the temporal variations of the macroscopic dynamic contact angle, and the contact radius, during electrowetting on rheologically tunable soft surfaces, at different applied electric potentials; subsequently, we prove through a scaling analysis, and an energy conservation approach, that the dielectric elasticity dependent, microscale elastocapillary deformation of the soft substrate, near the three-phase contact line, plays the integral role in dictating the macroscopic electrowetting behaviour. Interestingly, under such electro-elastocapillary phenomenon on soft dielectric...

  7. Sessile drops and condensation on chemically patterned micropillars

    Science.gov (United States)

    Shardt, Orest; Waghmare, Prashant; Orejon, Daniel; Gunda, Naga; Takata, Yasuyuki; Mitra, Sushanta

    2014-11-01

    We examine the state of sessile drops on silicon micropillars with patterned wettability as well as condensation of water onto such surfaces. These patterned micropillar arrays were created by treatment with a perfluoroalkylsilane to create a hydrophobic surface and subsequent patterning with sodium hydroxide solution to create hydrophilic regions. The surfaces were characterized by measuring the contact angles and observing the states of sessile drops, and the results are compared with those of uniformly hydrophobic and hydrophilic pillars. The nature of condensation onto patterned pillars has been examined with environmental scanning electron microscopy (ESEM). The results show the initial dropwise condensation on the different types of pillars and the transition to a film. Surfaces that combine texturing with chemical patterning could be useful for enhanced control of condensation and droplet motion.

  8. Stability of thin liquid films and sessile droplets under confinement.

    Science.gov (United States)

    Dörfler, Fabian; Rauscher, Markus; Dietrich, S

    2013-07-01

    The stability of nonvolatile thin liquid films and of sessile droplets is strongly affected by finite size effects. We analyze their stability within the framework of density functional theory using the sharp kink approximation, i.e., on the basis of an effective interface Hamiltonian. We show that finite size effects suppress spinodal dewetting of films because it is driven by a long-wavelength instability. Therefore nonvolatile films are stable if the substrate area is too small. Similarly, nonvolatile droplets connected to a wetting film become unstable if the substrate area is too large. This instability of a nonvolatile sessile droplet turns out to be equivalent to the instability of a volatile drop which can attain chemical equilibrium with its vapor. PMID:23944464

  9. Role of natural convection in the dissolution of sessile droplets

    OpenAIRE

    Dietrich, Erik; Wildeman, Sander; Visser, Claas Willem; Hofhuis, Kevin; Kooij, E. Stefan; Zandvliet, Harold J.W.; Lohse, Detlef

    2016-01-01

    The dissolution process of small (initial (equivalent) radius $R_0 < 1$ mm) long-chain alcohol (of various types) sessile droplets in water is studied, disentangling diffusive and convective contributions. The latter can arise for high solubilities of the alcohol, as the density of the alcohol-water mixture is then considerably less as that of pure water, giving rise to buoyancy driven convection. The convective flow around the droplets is measured, using micro-particle image velocimetry ($\\m...

  10. Stability of thin liquid films and sessile droplets under confinement

    OpenAIRE

    Dörfler, Fabian; Rauscher, Markus; Dietrich, S.

    2013-01-01

    The stability of nonvolatile thin liquid films and of sessile droplets is strongly affected by finite size effects. We analyze their stability within the framework of density functional theory using the sharp kink approximation, i.e., on the basis of an effective interface Hamiltonian. We show that finite size effects suppress spinodal dewetting of films because it is driven by a long-wavelength instability. Therefore nonvolatile films are stable if the substrate area is too small. Similarly,...

  11. The evaporation behavior of sessile droplets from aqueous saline solutions.

    Science.gov (United States)

    Soulié, Virginie; Karpitschka, Stefan; Lequien, Florence; Prené, Philippe; Zemb, Thomas; Moehwald, Helmuth; Riegler, Hans

    2015-09-14

    Quantitative experiments on the evaporation from sessile droplets of aqueous saline (NaCl) solutions show a strong dependence on salt concentration and droplet shape. The experiments were performed with seven decades of initial NaCl concentrations, with various droplet sizes and with different contact angles. The evaporation rate is significantly lower for high salt concentrations and small contact angles than what is expected from the well-accepted diffusion-controlled evaporation scenario for sessile droplets, even if the change of the vapor pressure due to the salt is taken into account. Particle tracking velocimetry reveals that this modification of the evaporation behavior is caused by marangoni flows that are induced by surface tension gradients originating from the local evaporative peripheral salt enrichment. In addition it is found that already very low salt concentrations lead to a pinning of the three phase contact line. Whereas droplets with concentration ≥10(-6) M NaCl are pinned as soon as evaporation starts, droplets with lower salt concentration do evaporate in a constant contact angle mode. Aside from new, fundamental insights the findings are also relevant for a better understanding of the widespread phenomenon of corrosion initiated by sessile droplets.

  12. Lotka-Volterra competition models for sessile organisms.

    Science.gov (United States)

    Spencer, Matthew; Tanner, Jason E

    2008-04-01

    Markov models are widely used to describe the dynamics of communities of sessile organisms, because they are easily fitted to field data and provide a rich set of analytical tools. In typical ecological applications, at any point in time, each point in space is in one of a finite set of states (e.g., species, empty space). The models aim to describe the probabilities of transitions between states. In most Markov models for communities, these transition probabilities are assumed to be independent of state abundances. This assumption is often suspected to be false and is rarely justified explicitly. Here, we start with simple assumptions about the interactions among sessile organisms and derive a model in which transition probabilities depend on the abundance of destination states. This model is formulated in continuous time and is equivalent to a Lotka-Volterra competition model. We fit this model and a variety of alternatives in which transition probabilities do not depend on state abundances to a long-term coral reef data set. The Lotka-Volterra model describes the data much better than all models we consider other than a saturated model (a model with a separate parameter for each transition at each time interval, which by definition fits the data perfectly). Our approach provides a basis for further development of stochastic models of sessile communities, and many of the methods we use are relevant to other types of community. We discuss possible extensions to spatially explicit models.

  13. Stability of a compound sessile drop at the axisymmetric configuration.

    Science.gov (United States)

    Zhang, Ying; Chatain, Dominique; Anna, Shelley L; Garoff, Stephen

    2016-01-15

    The equilibrium configuration of compound sessile drops has been calculated previously in the absence of gravity. Using the Laplace equations, we establish seven dimensionless parameters describing the axisymmetric configuration in the presence of gravity. The equilibrium axisymmetric configuration can be either stable or unstable depending on the fluid properties. A stability criterion is established by calculating forces on a perturbed Laplacian shape. In the zero Bond number limit, the stability criterion depends on the density ratio, two ratios of interfacial tensions, the volume ratio of the two drops, and the contact angle. We use Surface Evolver to examine the stability of compound sessile drops at small and large Bond numbers and compare with the zero Bond number approximation. Experimentally, we realize a stable axisymmetric compound sessile drop in air, where the buoyancy force exerted by the air is negligible. Finally, using a pair of fluids in which the density ratio can be tuned nearly independently of the interfacial tensions, the stability transition is verified for the axisymmetric configuration. Even though the perturbations are different for the theory, simulations and experiments, both simulations and experiments agree closely with the zero Bond number approximation, exhibiting a small discrepancy at large Bond number. PMID:26433481

  14. Substrate constraint modifies the Rayleigh spectrum of vibrating sessile drops

    Science.gov (United States)

    Chang, Chun-Ti; Bostwick, Joshua B.; Steen, Paul H.; Daniel, Susan

    2013-08-01

    In this work, we study the resonance behavior of mechanically oscillated, sessile water drops. By mechanically oscillating sessile drops vertically and within prescribed ranges of frequencies and amplitudes, a rich collection of resonance modes are observed and their dynamics subsequently investigated. We first present our method of identifying each mode uniquely, through association with spherical harmonics and according to their geometric patterns. Next, we compare our measured resonance frequencies of drops to theoretical predictions using both the classical theory of Lord Rayleigh and Lamb for free, oscillating drops, and a prediction by Bostwick and Steen that explicitly considers the effect of the solid substrate on drop dynamics. Finally, we report observations and analysis of drop mode mixing, or the simultaneous coexistence of multiple mode shapes within the resonating sessile drop driven by one sinusoidal signal of a single frequency. The dynamic response of a deformable liquid drop constrained by the substrate it is in contact with is of interest in a number of applications, such as drop atomization and ink jet printing, switchable electronically controlled capillary adhesion, optical microlens devices, as well as digital microfluidic applications where control of droplet motion is induced by means of a harmonically driven substrate.

  15. Sessile multidroplets and salt droplets under high tangential electric fields

    Science.gov (United States)

    Xie, Guoxin; He, Feng; Liu, Xiang; Si, Lina; Guo, Dan

    2016-01-01

    Understanding the interaction behaviors between sessile droplets under imposed high voltages is very important in many practical situations, e.g., microfluidic devices and the degradation/aging problems of outdoor high-power applications. In the present work, the droplet coalescence, the discharge activity and the surface thermal distribution response between sessile multidroplets and chloride salt droplets under high tangential electric fields have been investigated with infrared thermography, high-speed photography and pulse current measurement. Obvious polarity effects on the discharge path direction and the temperature change in the droplets in the initial stage after discharge initiation were observed due to the anodic dissolution of metal ions from the electrode. In the case of sessile aligned multidroplets, the discharge path direction could affect the location of initial droplet coalescence. The smaller unmerged droplet would be drained into the merged large droplet as a result from the pressure difference inside the droplets rather than the asymmetric temperature change due to discharge. The discharge inception voltages and the temperature variations for two salt droplets closely correlated with the ionization degree of the salt, as well as the interfacial electrochemical reactions near the electrodes. Mechanisms of these observed phenomena were discussed. PMID:27121926

  16. The exopolysaccharide gene cluster Bcam1330-Bcam1341 is involved in Burkholderia cenocepacia biofilm formation, and its expression is regulated by c-di-GMP and Bcam1349

    DEFF Research Database (Denmark)

    Fazli, Mustafa; McCarthy, Yvonne; Givskov, Michael;

    2013-01-01

    In Burkholderia cenocepacia, the second messenger cyclic diguanosine monophosphate (c-di-GMP) has previously been shown to positively regulate biofilm formation and the expression of cellulose and type-I fimbriae genes through binding to the transcriptional regulator Bcam1349. Here, we provide...... evidence that cellulose and type-I fimbriae are not involved in B. cenocepacia biofilm formation in flow chambers, and we identify a novel Bcam1349/c-di-GMP-regulated exopolysaccharide gene cluster which is essential for B. cenocepacia biofilm formation. Overproduction of Bcam1349 in trans promotes wrinkly...... matrix exopolysaccharide and to be essential for flow-chamber biofilm formation. We demonstrate that Bcam1349 binds to the promoter region of genes in the Bcam1330-Bcam1341 cluster and that this binding is enhanced by the presence of c-di-GMP. Furthermore, we demonstrate that overproduction of both c-di-GMP...

  17. A Pipeline for Screening Small Molecules with Growth Inhibitory Activity against Burkholderia cenocepacia.

    Directory of Open Access Journals (Sweden)

    Carrie Selin

    Full Text Available Infections with the bacteria Burkholderia cepacia complex (Bcc are very difficult to eradicate in cystic fibrosis patients due the intrinsic resistance of Bcc to most available antibiotics and the emergence of multiple antibiotic resistant strains during antibiotic treatment. In this work, we used a whole-cell based assay to screen a diverse collection of small molecules for growth inhibitors of a relevant strain of Bcc, B. cenocepacia K56-2. The primary screen used bacterial growth in 96-well plate format and identified 206 primary actives among 30,259 compounds. From 100 compounds with no previous record of antibacterial activity secondary screening and data mining selected a total of Bce bioactives that were further analyzed. An experimental pipeline, evaluating in vitro antibacterial and antibiofilm activity, toxicity and in vivo antibacterial activity using C. elegans was used for prioritizing compounds with better chances to be further investigated as potential Bcc antibacterial drugs. This high throughput screen, along with the in vitro and in vivo analysis highlights the utility of this experimental method to quickly identify bioactives as a starting point of antibacterial drug discovery.

  18. A Pipeline for Screening Small Molecules with Growth Inhibitory Activity against Burkholderia cenocepacia.

    Science.gov (United States)

    Selin, Carrie; Stietz, Maria S; Blanchard, Jan E; Gehrke, Sebastian S; Bernard, Sylvain; Hall, Dennis G; Brown, Eric D; Cardona, Silvia T

    2015-01-01

    Infections with the bacteria Burkholderia cepacia complex (Bcc) are very difficult to eradicate in cystic fibrosis patients due the intrinsic resistance of Bcc to most available antibiotics and the emergence of multiple antibiotic resistant strains during antibiotic treatment. In this work, we used a whole-cell based assay to screen a diverse collection of small molecules for growth inhibitors of a relevant strain of Bcc, B. cenocepacia K56-2. The primary screen used bacterial growth in 96-well plate format and identified 206 primary actives among 30,259 compounds. From 100 compounds with no previous record of antibacterial activity secondary screening and data mining selected a total of Bce bioactives that were further analyzed. An experimental pipeline, evaluating in vitro antibacterial and antibiofilm activity, toxicity and in vivo antibacterial activity using C. elegans was used for prioritizing compounds with better chances to be further investigated as potential Bcc antibacterial drugs. This high throughput screen, along with the in vitro and in vivo analysis highlights the utility of this experimental method to quickly identify bioactives as a starting point of antibacterial drug discovery. PMID:26053039

  19. Burkholderia cenocepacia type VI secretion system mediates escape of type II secreted proteins into the cytoplasm of infected macrophages.

    Directory of Open Access Journals (Sweden)

    Roberto Rosales-Reyes

    Full Text Available Burkholderia cenocepacia is an opportunistic pathogen that survives intracellularly in macrophages and causes serious respiratory infections in patients with cystic fibrosis. We have previously shown that bacterial survival occurs in bacteria-containing membrane vacuoles (BcCVs resembling arrested autophagosomes. Intracellular bacteria stimulate IL-1β secretion in a caspase-1-dependent manner and induce dramatic changes to the actin cytoskeleton and the assembly of the NADPH oxidase complex onto the BcCV membrane. A Type 6 secretion system (T6SS is required for these phenotypes but surprisingly it is not required for the maturation arrest of the BcCV. Here, we show that macrophages infected with B. cenocepacia employ the NLRP3 inflammasome to induce IL-1β secretion and pyroptosis. Moreover, IL-1β secretion by B. cenocepacia-infected macrophages is suppressed in deletion mutants unable to produce functional Type VI, Type IV, and Type 2 secretion systems (SS. We provide evidence that the T6SS mediates the disruption of the BcCV membrane, which allows the escape of proteins secreted by the T2SS into the macrophage cytoplasm. This was demonstrated by the activity of fusion derivatives of the T2SS-secreted metalloproteases ZmpA and ZmpB with adenylcyclase. Supporting this notion, ZmpA and ZmpB are required for efficient IL-1β secretion in a T6SS dependent manner. ZmpA and ZmpB are also required for the maturation arrest of the BcCVs and bacterial intra-macrophage survival in a T6SS-independent fashion. Our results uncover a novel mechanism for inflammasome activation that involves cooperation between two bacterial secretory pathways, and an unanticipated role for T2SS-secreted proteins in intracellular bacterial survival.

  20. Crystal structures of IspF from Plasmodium falciparum and Burkholderia cenocepacia: comparisons inform antimicrobial drug target assessment

    OpenAIRE

    O’Rourke, Patrick EF; Kalinowska-Tłuścik, Justyna; Fyfe, Paul K.; Dawson, Alice; Hunter, William N.

    2014-01-01

    Background 2C-methyl-D-erythritol-2,4-cyclodiphosphate synthase (IspF) catalyzes the conversion of 4-diphosphocytidyl-2C-methyl-D-erythritol-2-phosphate to 2C-methyl-D-erythritol-2,4-cyclodiphosphate and cytidine monophosphate in production of isoprenoid-precursors via the methylerythritol phosphate biosynthetic pathway. IspF is found in the protozoan Plasmodium falciparum, a parasite that causes cerebral malaria, as well as in many Gram-negative bacteria such as Burkholderia cenocepacia. Isp...

  1. Long-term risk of colorectal cancer in patients with sessile serrated adenomas, traditional serrated adenomas, and hyperplastic polyps

    DEFF Research Database (Denmark)

    Baron, John A; Erichsen, Rune; Hamilton-Dutoit, Stephen Jacques;

    Long-term risk of colorectal cancer in patients with sessile serrated adenomas, traditional serrated adenomas, and hyperplastic polyps......Long-term risk of colorectal cancer in patients with sessile serrated adenomas, traditional serrated adenomas, and hyperplastic polyps...

  2. Saturation mutagenesis of a CepR binding site as a means to identify new quorum-regulated promoters in Burkholderia cenocepacia

    Science.gov (United States)

    Burkholderia cenocepacia, an opportunistic pathogen of humans, encodes the CepI and CepR proteins, which resemble the LuxI and LuxR quorum sensing proteins of Vibrio fischeri. CepI directs the synthesis of octanoylhomoserine lactone (OHL), while CepR is an OHL dependent transcription factor. In pr...

  3. Dynamics of sessile drops. Part 3. Theory of forced oscillations

    CERN Document Server

    Bostwick, Joshua B

    2016-01-01

    A partially-wetting sessile drop is driven by a sinusoidal pressure field that produces capillary waves on the liquid/gas interface. The analysis presented in Part 1 of this series (Bostwick & Steen 2014) is extended by computing response diagrams and phase shifts for the viscous droplet, whose three phase contact-line moves with contact-angle that is a smooth function of the contact line speed. Viscous dissipation is incorporated through the viscous potential flow approximation and the critical Ohnesorge number bounding regions beyond which a given mode becomes over-damped is computed. Davis dissipation originating from the contact-line speed condition leads to damped oscillations for drops with finite contact-line mobility, even for inviscid fluids. The critical mobility and associated driving frequency to generate the largest Davis dissipation is computed. Lastly, regions of modal coexistence where two modes can be simultaneously excited by a single forcing frequency are identified. Predictions compare...

  4. Evaporation of Ethanol-Water Binary Mixture Sessile Liquid Marbles.

    Science.gov (United States)

    Ooi, Chin Hong; Bormashenko, Edward; Nguyen, Anh V; Evans, Geoffrey M; Dao, Dzung V; Nguyen, Nam-Trung

    2016-06-21

    Liquid marble is a liquid droplet coated with particles. Recently, the evaporation process of a sessile liquid marble using geometric measurements has attracted great attention from the research community. However, the lack of gravimetric measurement limits further insights into the physical changes of a liquid marble during the evaporation process. Moreover, the evaporation process of a marble containing a liquid binary mixture has not been reported before. The present paper investigates the effective density and the effective surface tension of an evaporating liquid marble that contains aqueous ethanol at relatively low concentrations. The effective density of an evaporating liquid marble is determined from the concurrent measurement of instantaneous mass and volume. Density measurements combined with surface profile fitting provide the effective surface tension of the marble. We found that the density and surface tension of an evaporating marble are significantly affected by the particle coating.

  5. Gravity driven current during sessile drop coalescence on a surface

    Science.gov (United States)

    Zhang, Ying; Oberdick, Samuel; Garoff, Stephen; Anna, Shelley

    2013-11-01

    We study the mixing behavior of two sessile drops following coalescence on a flat surface. The surface is composed of silicone elastomer on which the drops exhibit contact angles of about 90 degree. The two drops are of equal volume at coalescence, but different densities and viscosities. Using laser induced fluorescence, we obtain both a top view of the contact line motion and a side view of the cross-sectional flow. During the coalescence stage, the initial healing of the meniscus bridge and damping of capillary waves occur on time scales comparable to the inertio-capillary time. However, the interface between the dyed and undyed components remains sharp, with diffusive mixing occurring at much longer timescales. At intermediate time scales the motion is controlled by a gravity current, which leads to the eventual stratification into two separate horizontal layers within the composite drop. Using lubrication analysis, we characterize the gravity current as a function of the drop sizes, and the density and viscosity differences between the two merging fluids. The numerical solution of the lubrication analysis captures the observed scaling of the time dependent interface movement as a function of fluid and geometric parameters.

  6. Mixing in Sessile Drops Merging on a Surface

    Science.gov (United States)

    Anna, Shelley; Zhang, Ying; Oberdick, Samuel; Garoff, Stephen

    2011-11-01

    We investigate the mixing of two sessile drops that merge on a surface. The drops consist of low viscosity glycerol-water mixtures deposited on a silicone elastomer surface with contact angle near 90°. We observe the shape of the drops and the location of their intersection by placing a fluorescent dye in one drop and using a laser light sheet to image a plane perpendicular to the surface. The initial healing of the meniscus bridge between the merging drops, and the damping of capillary waves appearing on their surfaces occur on timescales comparable to the inertio-capillary relaxation time. However, the interface between the two fluids remains sharp, broadening diffusively over several minutes. The shape of the merged drops and the boundary between them also continues to evolve on a timescale of minutes. This later motion is controlled by gravity, capillary pressure, and viscous stresses. Images of the 3D drop shape indicate that small contact line motions are correlated to the slow relaxation. Although the two drops contain identical liquids except for the presence of the dye, the shape of the interface consistently evolves asymmetrically, assuming a characteristic crescent shape. We note that very tiny surface tension gradients can produce an asymmetric flow like the one observed here. We characterize the long timescale flow as a function of the drop sizes, and we use numerical simulations to aid in elucidating the essential physics.

  7. Measurement of dynamic surface tension by mechanically vibrated sessile droplets.

    Science.gov (United States)

    Iwata, Shuichi; Yamauchi, Satoko; Yoshitake, Yumiko; Nagumo, Ryo; Mori, Hideki; Kajiya, Tadashi

    2016-04-01

    We developed a novel method for measuring the dynamic surface tension of liquids using mechanically vibrated sessile droplets. Under continuous mechanical vibration, the shape of the deformed droplet was fitted by numerical analysis, taking into account the force balance at the drop surface and the momentum equation. The surface tension was determined by optimizing four parameters: the surface tension, the droplet's height, the radius of the droplet-substrate contact area, and the horizontal symmetrical position of the droplet. The accuracy and repeatability of the proposed method were confirmed using drops of distilled water as well as viscous aqueous glycerol solutions. The vibration frequency had no influence on surface tension in the case of pure liquids. However, for water-soluble surfactant solutions, the dynamic surface tension gradually increased with vibration frequency, which was particularly notable for low surfactant concentrations slightly below the critical micelle concentration. This frequency dependence resulted from the competition of two mechanisms at the drop surface: local surface deformation and surfactant transport towards the newly generated surface. PMID:27131706

  8. Characterization of biofluids prepared by sessile drop formation.

    Science.gov (United States)

    Esmonde-White, Karen A; Esmonde-White, Francis W L; Morris, Michael D; Roessler, Blake J

    2014-06-01

    Sessile drop formation, also called drop deposition, has been studied as a potential medical diagnostic, but the effects of complex biofluid rheology on the final deposition pattern are not well understood. We studied two model biofluids, blood plasma and synovial fluid, when deposited onto slightly hydrophilic substrates forming a contact angle of 50-90°. Drops were imaged during the evaporation process and geometric properties of the drop, such as contact angle and drop height, were calculated from the images. The resulting dried biofluid drops were then examined using light microscopy and Raman spectroscopy to assess morphological and chemical composition of the dried drop. The effect of substrate contact angle (surface wetting) and fluid concentration was examined. We found that when biofluids are deposited onto slightly hydrophilic surfaces, with a contact angle of 50-90°, a ring-shaped deposit was formed. Analysis of the drying drop's geometric properties indicates that biofluid dynamics follow the piling model of drop formation, as proposed by Deegan et al. The final deposition pattern varied with substrate surface and concentration, as shown by light microscopy photos of dried drops. The chemical composition of the outer ring was minimally affected by substrate surface, but the spatial heterogeneity of protein distribution within the ring varied with concentration. These results indicate that biofluid drop deposition produces ring-shaped deposits which can be examined by multiple analytical techniques. PMID:24757707

  9. Sessile alveolar macrophages communicate with alveolar epithelium to modulate immunity

    Science.gov (United States)

    Westphalen, Kristin; Gusarova, Galina A.; Islam, Mohammad N.; Subramanian, Manikandan; Cohen, Taylor S.; Prince, Alice S.; Bhattacharya, Jahar

    2014-02-01

    The tissue-resident macrophages of barrier organs constitute the first line of defence against pathogens at the systemic interface with the ambient environment. In the lung, resident alveolar macrophages (AMs) provide a sentinel function against inhaled pathogens. Bacterial constituents ligate Toll-like receptors (TLRs) on AMs, causing AMs to secrete proinflammatory cytokines that activate alveolar epithelial receptors, leading to recruitment of neutrophils that engulf pathogens. Because the AM-induced response could itself cause tissue injury, it is unclear how AMs modulate the response to prevent injury. Here, using real-time alveolar imaging in situ, we show that a subset of AMs attached to the alveolar wall form connexin 43 (Cx43)-containing gap junction channels with the epithelium. During lipopolysaccharide-induced inflammation, the AMs remained sessile and attached to the alveoli, and they established intercommunication through synchronized Ca2+ waves, using the epithelium as the conducting pathway. The intercommunication was immunosuppressive, involving Ca2+-dependent activation of Akt, because AM-specific knockout of Cx43 enhanced alveolar neutrophil recruitment and secretion of proinflammatory cytokines in the bronchoalveolar lavage. A picture emerges of a novel immunomodulatory process in which a subset of alveolus-attached AMs intercommunicates immunosuppressive signals to reduce endotoxin-induced lung inflammation.

  10. Large-scale facilitation of a sessile community by an invasive habitat-forming snail

    DEFF Research Database (Denmark)

    Thyrring, Jakob; Thomsen, Mads Solgaard; Wernberg, Thomas

    2013-01-01

    Abstract We provide an example of extensive facilitation of a sessile community throughout an invaded estuary by the invasive snail Batillaria australis. We show that B. australis greatly increases a limiting resource (attachment space) to a community of sessile organisms and estimate that a large......, as a functional group, has benefitted significantly from this invasion. These results expand the current understanding of how invaded marine systems respond to habitat-forming invaders....

  11. High-resolution structure of the M14-type cytosolic carboxypeptidase from Burkholderia cenocepacia refined exploiting PDB-REDO strategies

    International Nuclear Information System (INIS)

    The structure of a bacterial M14-family carboxypeptidase determined exploiting microfocus synchrotron radiation and highly automated refinement protocols reveals its potential to act as a polyglutamylase. A potential cytosolic metallocarboxypeptidase from Burkholderia cenocepacia has been crystallized and a synchrotron-radiation microfocus beamline allowed the acquisition of diffraction data to 1.9 Å resolution. The asymmetric unit comprises a tetramer containing over 1500 amino acids, and the high-throughput automated protocols embedded in PDB-REDO were coupled with model–map inspections in refinement. This approach has highlighted the value of such protocols for efficient analyses. The subunit is constructed from two domains. The N-terminal domain has previously only been observed in cytosolic carboxypeptidase (CCP) proteins. The C-terminal domain, which carries the Zn2+-containing active site, serves to classify this protein as a member of the M14D subfamily of carboxypeptidases. Although eukaryotic CCPs possess deglutamylase activity and are implicated in processing modified tubulin, the function and substrates of the bacterial family members remain unknown. The B. cenocepacia protein did not display deglutamylase activity towards a furylacryloyl glutamate derivative, a potential substrate. Residues previously shown to coordinate the divalent cation and that contribute to peptide-bond cleavage in related enzymes such as bovine carboxypeptidase are conserved. The location of a conserved basic patch in the active site adjacent to the catalytic Zn2+, where an acetate ion is identified, suggests recognition of the carboxy-terminus in a similar fashion to other carboxypeptidases. However, there are significant differences that indicate the recognition of substrates with different properties. Of note is the presence of a lysine in the S1′ recognition subsite that suggests specificity towards an acidic substrate

  12. High-resolution structure of the M14-type cytosolic carboxypeptidase from Burkholderia cenocepacia refined exploiting PDB-REDO strategies

    Energy Technology Data Exchange (ETDEWEB)

    Rimsa, Vadim; Eadsforth, Thomas C. [University of Dundee, Dundee DD1 5EH, Scotland (United Kingdom); Joosten, Robbie P. [Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam (Netherlands); Hunter, William N., E-mail: w.n.hunter@dundee.ac.uk [University of Dundee, Dundee DD1 5EH, Scotland (United Kingdom)

    2014-02-01

    The structure of a bacterial M14-family carboxypeptidase determined exploiting microfocus synchrotron radiation and highly automated refinement protocols reveals its potential to act as a polyglutamylase. A potential cytosolic metallocarboxypeptidase from Burkholderia cenocepacia has been crystallized and a synchrotron-radiation microfocus beamline allowed the acquisition of diffraction data to 1.9 Å resolution. The asymmetric unit comprises a tetramer containing over 1500 amino acids, and the high-throughput automated protocols embedded in PDB-REDO were coupled with model–map inspections in refinement. This approach has highlighted the value of such protocols for efficient analyses. The subunit is constructed from two domains. The N-terminal domain has previously only been observed in cytosolic carboxypeptidase (CCP) proteins. The C-terminal domain, which carries the Zn{sup 2+}-containing active site, serves to classify this protein as a member of the M14D subfamily of carboxypeptidases. Although eukaryotic CCPs possess deglutamylase activity and are implicated in processing modified tubulin, the function and substrates of the bacterial family members remain unknown. The B. cenocepacia protein did not display deglutamylase activity towards a furylacryloyl glutamate derivative, a potential substrate. Residues previously shown to coordinate the divalent cation and that contribute to peptide-bond cleavage in related enzymes such as bovine carboxypeptidase are conserved. The location of a conserved basic patch in the active site adjacent to the catalytic Zn{sup 2+}, where an acetate ion is identified, suggests recognition of the carboxy-terminus in a similar fashion to other carboxypeptidases. However, there are significant differences that indicate the recognition of substrates with different properties. Of note is the presence of a lysine in the S1′ recognition subsite that suggests specificity towards an acidic substrate.

  13. Ring formation from a drying sessile colloidal droplet

    Directory of Open Access Journals (Sweden)

    Wenbin Zhang

    2013-10-01

    Full Text Available Ring formation from drying sessile colloidal droplets (∼1.0 mm in size containing microparticles of silicon or polystyrene was investigated with video microscopy. Results show that ring formation begins at the pinned contact line with the growth of an annular nucleus in a line by line way, which recedes inward albeit only slightly, followed by stacking of particles when the flow velocity becomes sufficiently large. The central height of the droplet decreases linearly with evaporation time, which implies that in the early stage, the number of particles arriving at contact line increases with time in a power law N∝t3/(1 + λ, where the parameter λ, according to Deegan's evaporation model, is related to the contact angle via λ=π−2θc2π−2θc. Experimental values of λ agree well with model calculation for small contact angles, but are relatively smaller in the case of large contact angles. ‘Amorphization’ mechanism for the deposit at different stages of evaporation is discussed. Marangoni flow in a droplet on heated substrate introduces a desorption path for particles along the liquid surface, which can partially resolve the ring. Residual particles floating on the liquid surface may leave behind a homogeneous monolayer coating inside the dried spot. A “jump” in the droplet surface area at later stage of evaporation seems inevitably to cause a depletion zone of particles next to the ring. These results may be helpful for the development of strategies towards suppression of coffee ring effect and/or obtaining homogeneous coatings from drying colloidal suspension.

  14. Ring formation from a drying sessile colloidal droplet

    Science.gov (United States)

    Zhang, Wenbin; Yu, Tongxu; Liao, Longguang; Cao, Zexian

    2013-10-01

    Ring formation from drying sessile colloidal droplets (˜1.0 mm in size) containing microparticles of silicon or polystyrene was investigated with video microscopy. Results show that ring formation begins at the pinned contact line with the growth of an annular nucleus in a line by line way, which recedes inward albeit only slightly, followed by stacking of particles when the flow velocity becomes sufficiently large. The central height of the droplet decreases linearly with evaporation time, which implies that in the early stage, the number of particles arriving at contact line increases with time in a power law N∝t3/(1 + λ), where the parameter λ, according to Deegan's evaporation model, is related to the contact angle via λ = {π - 2θ _c }/{2π - 2θ _c }. Experimental values of λ agree well with model calculation for small contact angles, but are relatively smaller in the case of large contact angles. `Amorphization' mechanism for the deposit at different stages of evaporation is discussed. Marangoni flow in a droplet on heated substrate introduces a desorption path for particles along the liquid surface, which can partially resolve the ring. Residual particles floating on the liquid surface may leave behind a homogeneous monolayer coating inside the dried spot. A "jump" in the droplet surface area at later stage of evaporation seems inevitably to cause a depletion zone of particles next to the ring. These results may be helpful for the development of strategies towards suppression of coffee ring effect and/or obtaining homogeneous coatings from drying colloidal suspension.

  15. Lack of MyD88 protects the immunodeficient host against fatal lung inflammation triggered by the opportunistic bacteria Burkholderia cenocepacia.

    Science.gov (United States)

    Ventura, Grasiella M de C; Balloy, Viviane; Ramphal, Reuben; Khun, Huot; Huerre, Michel; Ryffel, Bernhard; Plotkowski, Maria-Cristina M; Chignard, Michel; Si-Tahar, Mustapha

    2009-07-01

    Burkholderia cenocepacia is an opportunistic pathogen of major concern for cystic fibrosis patients as well as immunocompromised cancer patients and transplant recipients. The mechanisms by which B. cenocepacia triggers a rapid health deterioration of the susceptible host have yet to be characterized. TLR and their key signaling intermediate MyD88 play a central role in the detection of microbial molecular patterns and in the initiation of an effective immune response. We performed a study to better understand the role of TLR-MyD88 signaling in B. cenocepacia-induced pathogenesis in the immunocompromised host, using an experimental murine model. The time-course of several dynamic parameters, including animal survival, bacterial load, and secretion of critical inflammatory mediators, was compared in infected and immunosuppressed wild-type and MyD88(-/-) mice. Notably, when compared with wild-type mice, infected MyD88(-/-) animals displayed significantly reduced levels of inflammatory mediators (including KC, TNF-alpha, IL-6, MIP-2, and G-CSF) in blood and lung airspaces. Moreover, despite a higher transient bacterial load in the lungs, immunosuppressed mice deficient in MyD88 had an unexpected survival advantage. Finally, we showed that this B. cenocepacia-induced life-threatening infection of wild-type mice involved the proinflammatory cytokine TNF-alpha and could be prevented by corticosteroids. Altogether, our findings demonstrate that a MyD88-dependent pathway can critically contribute to a detrimental host inflammatory response that leads to fatal pneumonia. PMID:19535624

  16. Simple Hydrostatic Model of Contact Angle Hysteresis of a Sessile Drop on Rough Surface

    Institute of Scientific and Technical Information of China (English)

    毛在砂; 杨超; 陈家镛

    2005-01-01

    The phenomenon of hysteresis of contact angle is an important topic subject to a long time of argument.A simple hydrostatic model of sessile drops under the gravity in combination with an ideal surface roughness model is used to interpret the process of drop volume increase or decrease of a planar sessile drop and to shed light on the contact angle hysteresis and its relationship with the solid surface roughness. With this model, the advancing and receding contact angles are conceptually explained in terms of equilibrium contact angle and surface roughness only,without invoking the thermodynamic multiplicity. The model is found to be qualitatively consistent to experimental observations on contact angle hysteresis and it suggests a possible way to approach the hysteresis of three-dimensional sessile drops.

  17. Recruitment Variability of Coral Reef Sessile Communities of the Far North Great Barrier Reef.

    Science.gov (United States)

    Luter, Heidi M; Duckworth, Alan R; Wolff, Carsten W; Evans-Illidge, Elizabeth; Whalan, Steve

    2016-01-01

    One of the key components in assessing marine sessile organism demography is determining recruitment patterns to benthic habitats. An analysis of serially deployed recruitment tiles across depth (6 and 12 m), seasons (summer and winter) and space (meters to kilometres) was used to quantify recruitment assemblage structure (abundance and percent cover) of corals, sponges, ascidians, algae and other sessile organisms from the northern sector of the Great Barrier Reef (GBR). Polychaetes were most abundant on recruitment titles, reaching almost 50% of total recruitment, yet covered reefs.

  18. Odorous house ants (Tapinoma sessile) as back-seat drivers of localized ant decline in urban habitats.

    Science.gov (United States)

    Salyer, Adam; Bennett, Gary W; Buczkowski, Grzegorz A

    2014-01-01

    Invasive species and habitat disturbance threaten biodiversity worldwide by modifying ecosystem performance and displacing native organisms. Similar homogenization impacts manifest locally when urbanization forces native species to relocate or reinvade perpetually altered habitat. This study investigated correlations between ant richness and abundance in response to urbanization and the nearby presence of invasive ant species, odorous house ants (Tapinoma sessile), within its native region. Surveying localized ant composition within natural, semi-natural, and urban habitat supported efforts to determine whether T. sessile appear to be primary (drivers) threats as instigators or secondary (passengers) threats as inheritors of indigenous ant decline. Sampling 180 sites, evenly split between all habitats with and without T. sessile present, yielded 45 total species. Although urbanization and T. sessile presence factors were significantly linked to ant decline, their interaction correlated to the greatest reduction of total ant richness (74%) and abundance (81%). Total richness appeared to decrease from 27 species to 18 when natural habitat is urbanized and from 18 species to 7 with T. sessile present in urban plots. Odorous house ant presence minimally influenced ant communities within natural and semi-natural habitat, highlighting the importance of habitat alteration and T. sessile presence interactions. Results suggest urbanization releases T. sessile from unknown constraints by decreasing ant richness and competition. Within urban environment, T. sessile are pre-adapted to quickly exploit new resources and grow to supercolony strength wherein T. sessile drive adjacent biodiversity loss. Odorous house ants act as passengers and drivers of ecological change throughout different phases of urban 'invasion'. This progression through surviving habitat alteration, exploiting new resources, thriving, and further reducing interspecific competition supports a "back

  19. Speciation, diversification, and coexistence of sessile species that compete for space

    DEFF Research Database (Denmark)

    Mitarai, Namiko; Heinsalu, Els; Sneppen, Kim

    2014-01-01

    characterized by many types of ecological interactions. A general problem is to understand conditions that support a dynamically maintained coexistence of many species in an ecosystem over a long time span. In the present paper we propose a lattice model of multiple competing and evolving sessile species. When...

  20. Comparison of the lateral retention forces on sessile and pendant water drops on a solid surface

    CERN Document Server

    de la Madrid, Rafael; Irwin, George

    2015-01-01

    We present a simple experiment that demonstrates how a water drop hanging from a Plexiglas surface (pendant drop) experiences a lateral retention force that is comparable to, and in some cases larger than, the lateral retention force on a drop resting on top of the surface (sessile drop). The experiment also affords a simple demonstration of the Coriolis effect in two dimensions.

  1. Comparison of the lateral retention forces on sessile and pendant water drops on a solid surface

    Science.gov (United States)

    de la Madrid, Rafael; Whitehead, Taylor; Irwin, George M.

    2015-06-01

    We present a simple experiment that demonstrates how a water drop hanging from a Plexiglas surface (pendant drop) experiences a lateral retention force that is comparable to, and in some cases larger than, the lateral retention force on a drop resting on top of the surface (sessile drop). The experiment also affords a simple demonstration of the Coriolis effect in two dimensions.

  2. Sessile dislocations by reactions in NiAl severely deformed at room temperature

    Energy Technology Data Exchange (ETDEWEB)

    Geist, D. [University of Vienna, Faculty of Physics, Physics of Nanostructured Materials, 1090 Vienna (Austria); Gammer, C. [University of Vienna, Faculty of Physics, Physics of Nanostructured Materials, 1090 Vienna (Austria); National Center for Electron Microscopy, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 (United States); Rentenberger, C., E-mail: christian.rentenberger@univie.ac.at [University of Vienna, Faculty of Physics, Physics of Nanostructured Materials, 1090 Vienna (Austria); Karnthaler, H.P. [University of Vienna, Faculty of Physics, Physics of Nanostructured Materials, 1090 Vienna (Austria)

    2015-02-05

    Highlights: • HPT of NiAl enables the hitherto impossible study of multiple slip deformation at RT. • TEM shows that glissile a〈1 0 0〉 dislocations react and form sessile a〈1 1 0〉 ones. • 3D dislocation networks with sessile a〈1 1 0〉 cause deformation-induced embrittlement. • By HPT chemical order is hardly reduced even in regions made nanocrystalline. - Abstract: B2 ordered NiAl is known for its poor room temperature (RT) ductility; failure occurs in a brittle like manner even in ductile single crystals deforming by single slip. In the present study NiAl was severely deformed at RT using the method of high pressure torsion (HPT) enabling the hitherto impossible investigation of multiple slip deformation. Methods of transmission electron microscopy were used to analyze the dislocations formed by the plastic deformation showing that as expected dislocations with Burgers vector a〈100〉 carry the plasticity during HPT deformation at RT. In addition, we observe that they often form a〈110〉 dislocations by dislocation reactions; the a〈110〉 dislocations are considered to be sessile based on calculations found in the literature. It is therefore concluded that the frequently encountered 3D dislocation networks containing sessile a〈110〉 dislocations are pinned and lead to deformation-induced embrittlement. In spite of the severe deformation, the chemical order remains unchanged.

  3. Multimodality imaging in the diagnosis of deep vein thrombosis and popliteal pseudoaneurysm complicating a sessile osteochondroma

    Energy Technology Data Exchange (ETDEWEB)

    Christensen, Jared D.; Monu, Johnny U.V. [University of Rochester School of Medicine and Dentistry, Department of Imaging Sciences, 601 Elmwood Ave., Box 648, Rochester, NY (United States)

    2008-08-15

    Synergistic use of ultrasonography, radiography, multidetector CT (MDCT) and MRI enabled a prompt and accurate diagnosis of a nonocclusive popliteal vein thrombus (deep venous thrombosis, DVT) and a pseudoaneurysm complicating a sessile osteochondroma in an 11-year-old boy who presented in the emergency department with sudden-onset nontraumatic pain in the posterior aspect of the knee. (orig.)

  4. Influences on the structure of suburban ant (Hymenoptera: Formicidae) communities and the abundance of Tapinoma sessile.

    Science.gov (United States)

    Toennisson, T A; Sanders, N J; Klingeman, W E; Vail, K M

    2011-12-01

    Urbanization can alter the organization of ant communities and affect populations of urban pest ants. In this study, we sampled ant communities in urban and suburban yards to understand the habitat factors that shape these communities and influence the abundance of a common pest species, Tapinoma sessile (Say). We used pitfall traps to sample ant communities and a combination of pitfall traps and baiting to collect T. sessile at 24 sites in Knoxville, TN. In total, we collected 46 ant species. Ant species richness ranged from seven to 24 species per yard. Ant species richness tended to be lowest near houses, whereas T. sessile abundance was highest near houses. The best predictors of ant species richness in yards were canopy cover and presence of leaf litter: ant species richness peaked at mid-levels of canopy cover and was negatively correlated with the presence of leaf litter. Tapinoma sessile abundance increased with presence of logs, boards, or landscaping timbers and leaf litter in yards. Our results indicate that ant communities and the abundance of particular pest species in these urban and suburban landscapes are shaped by many of the same factors that structure ant communities in less anthropogenically disturbed environments. PMID:22217754

  5. Evaporation of pure liquid sessile and spherical suspended drops: a review.

    Science.gov (United States)

    Erbil, H Yildirim

    2012-01-15

    A sessile drop is an isolated drop which has been deposited on a solid substrate where the wetted area is limited by a contact line and characterized by contact angle, contact radius and drop height. Diffusion-controlled evaporation of a sessile drop in an ambient gas is an important topic of interest because it plays a crucial role in many scientific applications such as controlling the deposition of particles on solid surfaces, in ink-jet printing, spraying of pesticides, micro/nano material fabrication, thin film coatings, biochemical assays, drop wise cooling, deposition of DNA/RNA micro-arrays, and manufacture of novel optical and electronic materials in the last decades. This paper presents a review of the published articles for a period of approximately 120 years related to the evaporation of both sessile drops and nearly spherical droplets suspended from thin fibers. After presenting a brief history of the subject, we discuss the basic theory comprising evaporation of micrometer and millimeter sized spherical drops, self cooling on the drop surface and evaporation rate of sessile drops on solids. The effects of drop cooling, resultant lateral evaporative flux and Marangoni flows on evaporation rate are also discussed. This review also has some special topics such as drop evaporation on superhydrophobic surfaces, determination of the receding contact angle from drop evaporation, substrate thermal conductivity effect on drop evaporation and the rate evaporation of water in liquid marbles. PMID:22277832

  6. How Natural Evaporation Temporally Self-Tunes an Oscillating Sessile Droplet To Resonate at Different Modes.

    Science.gov (United States)

    Sanyal, Apratim; Basu, Saptarshi

    2016-05-17

    We report the dynamics and underlying physics of evaporation driven transitions and autotuning of oscillation modes in sessile droplets subject to substrate perturbations. We have shown that evaporation controls temporal transition of the oscillation mode with a spatially downward shift of nodes (surface locations with zero displacement) toward the three-phase contact line. We have explained the physical mechanism using two parameters: the first quantifies evaporation driven tuning for resonance detection, and the second parameter characterizes mode lifetime which is found to be governed by evaporation dynamics. It is desirable to achieve autotuning of the oscillation modes in sessile droplets that essentially self-evolves in a spatiotemporal manner with continued evaporation. The insights suggest control of mode resonances is possible, which in turn will allow precision manipulations at droplet scale crucial for many applications such as surface patterning and others.

  7. Habitat segregation of sessile marine organisms; Kaiyo fuchaku seibutsu no sumiwake

    Energy Technology Data Exchange (ETDEWEB)

    Isoai, A. [Asahi Glass Co. Ltd., Tokyo (Japan); Kawahara, H.; Shizuri, Y.

    1996-08-01

    In order to develop the safe control agent of sessile marine organisms, the mechanism of habitat segregation of them has been investigated. Among various marine organisms, around 120 species of Porifera and Coelenterata accompanied with less the other sessile organisms were collected, to examine the adhesion prevention activity of their extracts against barnacles and Mytilus edulis. As a result, this activity was found out for 33% of Porifera and 27% of Coelenterata specimens. This means these organisms contain the adhesion prevention substances, and it is considered these chemical substances are practically used for the habitat segregation. Isolation structures of the chemical substances used for the habitat segregation were determined from these organisms. It was made clear that two acceptor genes successfully cloned from Balanus amphitrate are new G-protein coupling type acceptors having similar homology to the adrenaline and serotonin acceptors. 15 refs., 3 figs.

  8. Experimental study of evaporation of sessile water droplet on PDMS surfaces

    Science.gov (United States)

    Yu, Ying-Song; Wang, Zi-Qian; Zhao, Ya-Pu

    2013-12-01

    Evaporation of sessile water droplet on polydimethylsiloxane (PDMS) surfaces with three different curing ratios (5: 1, 10: 1, and 20: 1) was experimentally investigated in this paper. We show that the constant contact radius (CCR) evaporation on surface with high curing ratio lasts longer than that with low curing ratio. We also measured Young's moduli of PDMS films by using atomic force microscopy (AFM) and simulated surface deformation of PDMS films induced by sessile water droplet. With increasing curing ratio of PDMS film, Young's modulus of PDMS film is getting lower, and then there will be larger surface deformation and more elastic stored energy. Since such energy acts as a barrier to keep the three-phase contact line pinned, thus it will result in longer CCR evaporation on PDMS surface with higher curing ratio.

  9. Density Measurement of Liquid Ni-Ta Alloys by a Modified Sessile Drop Method

    Institute of Scientific and Technical Information of China (English)

    FANG Liang; XIAO Feng; TAO Zainan; Kusuhiro Mukai

    2005-01-01

    The density of liquid Ni-Ta alloys was measured by using a modified sessile drop method. It is found that the density of the liquid Ni-Ta alloys decreases with the increasing temperature, but increases with the increase of tantalum concentration in the alloys. The molar volume of liquid Ni-Ta binary alloys increases with the increase of temperature and tantalum concentration.

  10. Analysis of the amount of ash during sessile oak (Quercus petraea, Mattuschka) wood combustion

    OpenAIRE

    Nestorovski Ljupcho; Nacevski Mitko; Trajanov Zdravko; Trajkov Pande

    2015-01-01

    The subject of investigation in this paper is the amount of ash residue during combustion of Sessile oak (Quercus petraea, Mattuschka) wood that is one of the most usable ones as fire wood in households in the Republic of Macedonia. The purpose of this investigation was to establish the amount of ash, as one of the biggest problems during energy production with forest biomass. The material for this investigation is collected from two different regions of th...

  11. Water-borne sperm trigger vitellogenic egg growth in two sessile marine invertebrates.

    OpenAIRE

    Bishop, J D; Manríquez, P H; Hughes, R. N.

    2000-01-01

    A diverse array of sessile marine invertebrates mate by passive dispersal of sperm which fertilize the brooded eggs of neighbours. In two such species, a sea-mat (phylum Bryozoa) and an ascidian (phylum Chordata), vitellogenic egg growth is absent in reproductively isolated specimens, but is triggered by a water-borne factor released by conspecifics. In both of these colonial, hermaphroditic species, the active factor can be removed from water by filtration. The effect involves self-/non-self...

  12. The role of phytic acid in storage of acorns of sessile oak (Quercus petraea (Matt.) Liebl.)

    OpenAIRE

    Žitnik, Sašo; Kraigher, Hojka

    1999-01-01

    The aim of the research is to develop new cheap and practical methods for long-term storage of acorns of sessile oak, because today it is possible to store them only for few months (recalcitrant seeds). The research is based on the hypothesis, that the vitality of acorns after long-term storage is in positive correlation with the content of phytic acid in them, which is in positive correlation with the content of available phosphorus in soil. The experiment is established as a case study on t...

  13. Different harvest intensity and soil CO2 efflux in sessile oak coppice forests

    OpenAIRE

    Darenova E; Cater M; Pavelka M

    2016-01-01

    Soil CO2 efflux accounts for about 45-80% of total ecosystem respiration and is therefore an important part of the ecosystem carbon cycle. Soil CO2 efflux has been poorly studied in forests managed in the ancient coppicing manner. In our study, soil CO2 efflux, temperature, and moisture were measured in sessile oak stands with different harvesting intensity (control: 0% intensity; V1: 75%; V2: 80 %; V3: 85%; and V4: 100%) during the fifth and sixth years after harvesting. Soil CO2 efflux was ...

  14. Dynamics of sessile and pendant drop excited by surface acoustic waves: gravity effects and correlation between oscillatory and translational motions

    CERN Document Server

    Bussonière, Adrien; Brunet, Philippe; Matar, Olivier Bou

    2016-01-01

    When sessile droplets are excited by ultrasonic traveling surface acoustic waves (SAWs), they undergo complex dynamics with both oscillations and translational motion. While the nature of the Rayleigh-Lamb quadrupolar drop oscillations has been identified, their origin and their influence on the drop mobility remains unexplained. Indeed the physics behind this peculiar dynamics is complex with nonlinearities involved both at the excitation level (acoustic streaming and radiation pressure) and in the droplet response (nonlinear oscillations and contact line dynamics). In this paper, we investigate the dynamics of sessile and pendant drops excited by SAWs. For pendant drops, so-far unreported dynamics are observed close to the drop detachment threshold with the suppression of the translational motion. Away from this threshold, the comparison between pendant and sessile drop dynamics allows us to identify the role played by gravity or more generally by an initial or dynamically induced stretching of the drop. In...

  15. Optimization of the RNeasy Mini Kit to obtain high-quality total RNA from sessile cells of Staphylococcus aureus

    Directory of Open Access Journals (Sweden)

    C. O. Beltrame

    2015-12-01

    Full Text Available Biofilm formed by Staphylococcus aureus is considered an important virulence trait in the pathogenesis of infections associated with implantable medical devices. Gene expression analyses are important strategies for determining the mechanisms involved in production and regulation of biofilm. Obtaining intact RNA preparations is the first and most critical step for these studies. In this article, we describe an optimized protocol for obtaining total RNA from sessile cells of S. aureus using the RNeasy Mini Kit. This method essentially consists of a few steps, as follows: 1 addition of acetone-ethanol to sessile cells, 2 lysis with lysostaphin at 37°C/10 min, 3 vigorous mixing, 4 three cycles of freezing and thawing, and 5 purification of the lysate in the RNeasy column. This simple pre-kit procedure yields high-quality total RNA from planktonic and sessile cells of S. aureus.

  16. In vitro activity of Aloe vera inner gel against microorganisms grown in planktonic and sessile phases.

    Science.gov (United States)

    Cataldi, V; Di Bartolomeo, S; Di Campli, E; Nostro, A; Cellini, L; Di Giulio, M

    2015-12-01

    The failure of traditional antimicrobial treatments is becoming a worldwide problem. The use of Aloe vera is of particular interest for its role as curative agent and its efficacy in complementary therapies for a variety of illnesses. This study evaluated the antimicrobial activity of A. vera inner gel against a panel of microorganisms, Gram-positive and -negative bacteria, and Candida albicans. In addition to A. vera inner gel being used in the treatment of peptic ulcers, in dermatological treatments, and wound healing, it was also tested on the sessile phase of clinical Helicobacter pylori strains (including multi-drug-resistant strains) and on planktonic and sessile phase of Staphylococcus aureus/Pseudomonas aeruginosa clinical isolates from venous leg ulcers.A. vera inner gel expresses its prevalent activity against Gram-negative bacteria and C. albicans in respect to Gram-positive bacteria. The results of the A. vera antibiofilm activity showed a decrease of the produced biomass in a concentration-dependent-way, in each analyzed microorganism. The data obtained show that A. vera inner gel has both an antimicrobial and antibiofilm activity suggesting its potential use for the treatment of microbial infections, in particular for H. pylori gastric infection, especially in case of multi-drug-resistance, as well as for an effective wound dressing.

  17. Tensiometric Characterization of Superhydrophobic Surfaces As Compared to the Sessile and Bouncing Drop Methods.

    Science.gov (United States)

    Hisler, Valentin; Jendoubi, Hiba; Hairaye, Camille; Vonna, Laurent; Le Houérou, Vincent; Mermet, Frédéric; Nardin, Michel; Haidara, Hamidou

    2016-08-01

    We have considered in this work the Wilhelmy plate tensiometer to characterize the wetting properties of two model surface textures: (i) a series of three superhydrophobic micropillared surfaces and (ii) a series of two highly water-repellent surfaces microtextured with a femtosecond laser. The wetting forces obtained on these surfaces with the Wilhelmy plate technique were compared to the contact angles of water droplets measured with the sessile drop technique and to the bouncing behavior of water droplets recorded at a high frame rate. We showed that it is possible with this technique to directly measure triple-line anchoring forces that are not accessible with the commonly used sessile drop technique. In addition, we have demonstrated on the basis of the bouncing drop experiments wetting transitions induced by the specific test conditions associated with the Wilhelmy plate tensiometer for the two series of textured surfaces. Finally, the tensiometer technique is proposed as an alternative test for characterizing the wetting properties of highly liquid-repellent surface, especially under immersion conditions. PMID:27408983

  18. Recruitment Variability of Coral Reef Sessile Communities of the Far North Great Barrier Reef.

    Directory of Open Access Journals (Sweden)

    Heidi M Luter

    Full Text Available One of the key components in assessing marine sessile organism demography is determining recruitment patterns to benthic habitats. An analysis of serially deployed recruitment tiles across depth (6 and 12 m, seasons (summer and winter and space (meters to kilometres was used to quantify recruitment assemblage structure (abundance and percent cover of corals, sponges, ascidians, algae and other sessile organisms from the northern sector of the Great Barrier Reef (GBR. Polychaetes were most abundant on recruitment titles, reaching almost 50% of total recruitment, yet covered <5% of each tile. In contrast, mean abundances of sponges, ascidians, algae, and bryozoans combined was generally less than 20% of total recruitment, with percentage cover ranging between 15-30% per tile. Coral recruitment was very low, with <1 recruit per tile identified. A hierarchal analysis of variation over a range of spatial and temporal scales showed significant spatio-temporal variation in recruitment patterns, but the highest variability occurred at the lowest spatial scale examined (1 m-among tiles. Temporal variability in recruitment of both numbers of taxa and percentage cover was also evident across both summer and winter. Recruitment across depth varied for some taxonomic groups like algae, sponges and ascidians, with greatest differences in summer. This study presents some of the first data on benthic recruitment within the northern GBR and provides a greater understanding of population ecology for coral reefs.

  19. Recruitment Variability of Coral Reef Sessile Communities of the Far North Great Barrier Reef.

    Science.gov (United States)

    Luter, Heidi M; Duckworth, Alan R; Wolff, Carsten W; Evans-Illidge, Elizabeth; Whalan, Steve

    2016-01-01

    One of the key components in assessing marine sessile organism demography is determining recruitment patterns to benthic habitats. An analysis of serially deployed recruitment tiles across depth (6 and 12 m), seasons (summer and winter) and space (meters to kilometres) was used to quantify recruitment assemblage structure (abundance and percent cover) of corals, sponges, ascidians, algae and other sessile organisms from the northern sector of the Great Barrier Reef (GBR). Polychaetes were most abundant on recruitment titles, reaching almost 50% of total recruitment, yet covered recruitment, with percentage cover ranging between 15-30% per tile. Coral recruitment was very low, with recruit per tile identified. A hierarchal analysis of variation over a range of spatial and temporal scales showed significant spatio-temporal variation in recruitment patterns, but the highest variability occurred at the lowest spatial scale examined (1 m-among tiles). Temporal variability in recruitment of both numbers of taxa and percentage cover was also evident across both summer and winter. Recruitment across depth varied for some taxonomic groups like algae, sponges and ascidians, with greatest differences in summer. This study presents some of the first data on benthic recruitment within the northern GBR and provides a greater understanding of population ecology for coral reefs. PMID:27049650

  20. Loss of Hes1 Differentiates Sessile Serrated Adenoma/polyp from Hyperplastic Polyp

    Science.gov (United States)

    Cui, Min; Awadallah, Amad; Liu, Wendy; Zhou, Lan; Xin, Wei

    2016-01-01

    Sessile serrated adenoma/polyp (SSA/p) is a precancerous lesion, and its differential diagnosis from hyperplastic polyp (HP) could be challenging in certain circumstances based on morphology alone. Hes1 is a downstream target of Notch signaling pathway and plays an important role in intestinal development by regulating differentiation of enterocytes. In this study, we evaluated the expression patterns of Hes1 in SSA/p and hyperplastic polyp (HP), and determine whether Hes1 immunostaining can help differentiate between these two entities. Serrated polyps with cytological dysplasia (sessile serrated adenoma with cytological dysplasia, tubular adenoma, and traditional serrated adenoma) were also studied. Hes1 is ubiquitously expressed in the nuclei of normal colon epithelial cells. The complete loss or a very weak expression of Hes1 is observed in the majority of the SSA/p in the study (58/63, 92%) compared to the normal expression of Hes1 in HP (35/35,100%). In SSA/p with cytological dysplasia, dysplastic area demonstrated cytoplasmic and/or nuclear staining for Hes1. Tubular adenoma and traditional serrated adenoma showed variability of Hes1 staining within the polyp with a mixed positive and negative staining pattern. Our study suggests that loss of Hes1 could be used as a sensitive and specific marker to differentiate SSA/p from HP, which helps the diagnosis in morphologically challenging cases. PMID:26448192

  1. Effect of Marangoni Flows on the Shape of Thin Sessile Droplets Evaporating into Air

    Science.gov (United States)

    Tsoumpas, Yannis; Dehaeck, Sam; Rednikov, Alexey; Colinet, Pierre

    2015-11-01

    With the help of Mach-Zehnder interferometry, we study the (largely) axisymmetric shapes of freely receding evaporating sessile droplets of various HFE liquids. The droplets evaporate into ambient air and, although the liquids are perfectly wetting, possess small finite contact angles reckoned to be evaporation-induced. The experimentally determined droplet profiles are shown here to deviate, under some conditions, from the classical macroscopic static profile of a sessile droplet, as this is determined by gravity and capillarity. These deviations are attributed to a Marangoni flow, due to evaporation-induced thermal gradients along the liquid-air interface, and are mostly observed in conditions of high evaporation. Unlike the classical static shapes, the distorted experimental profiles exhibit an inflection point at the contact line area. When a poorly volatile liquid is considered, however, the temperature differences and the Marangoni stresses are weak, and the measurements are found to be in a good agreement with the classical static shape. Overall, the experimental findings are quantitatively confirmed by the predictions of a lubrication model accounting for the impact of the Marangoni effect on the droplet shape. Financial support of FP7 Marie Curie MULTIFLOW Network (PITNGA-2008-214919), ESA/BELSPO-PRODEX, BELSPO- μMAST (IAP 7/38) & FRS-FNRS is gratefully acknowledged.

  2. In vitro activity of Aloe vera inner gel against microorganisms grown in planktonic and sessile phases.

    Science.gov (United States)

    Cataldi, V; Di Bartolomeo, S; Di Campli, E; Nostro, A; Cellini, L; Di Giulio, M

    2015-12-01

    The failure of traditional antimicrobial treatments is becoming a worldwide problem. The use of Aloe vera is of particular interest for its role as curative agent and its efficacy in complementary therapies for a variety of illnesses. This study evaluated the antimicrobial activity of A. vera inner gel against a panel of microorganisms, Gram-positive and -negative bacteria, and Candida albicans. In addition to A. vera inner gel being used in the treatment of peptic ulcers, in dermatological treatments, and wound healing, it was also tested on the sessile phase of clinical Helicobacter pylori strains (including multi-drug-resistant strains) and on planktonic and sessile phase of Staphylococcus aureus/Pseudomonas aeruginosa clinical isolates from venous leg ulcers.A. vera inner gel expresses its prevalent activity against Gram-negative bacteria and C. albicans in respect to Gram-positive bacteria. The results of the A. vera antibiofilm activity showed a decrease of the produced biomass in a concentration-dependent-way, in each analyzed microorganism. The data obtained show that A. vera inner gel has both an antimicrobial and antibiofilm activity suggesting its potential use for the treatment of microbial infections, in particular for H. pylori gastric infection, especially in case of multi-drug-resistance, as well as for an effective wound dressing. PMID:26526205

  3. Sessile-drop oscillations fill a symmetry-breaking periodic table

    Science.gov (United States)

    Bostwick, Joshua; Steen, Paul

    2010-11-01

    Oscillations of a sessile drop are of fundamental interest for the contact-line instabilities they can exhibit and of practical importance in a number of industrial applications. We consider the small oscillations of the inviscid sessile drop under a number of contact line conditions, including a contact-line modeled using a continuous contact-angle against speed relationship. The integro-differential equation, governing the motion of the interface, is formulated as a functional equation using inverse operators, which are parameterized by volume via the static contact angle of the drop base-state and by the mobility of the contact-line. In the symmetric limit, a hemispherical drop perturbed by a fixed contact-angle disturbance has characteristic oscillation frequencies, which are degenerate with respect to azimuthal wave-number much like the Bohr model of the atom is degenerate with respect to angular momentum quantum number. This degeneracy is broken by smoothly varying either i) the volume and/or ii) the contact line mobility. The analogy between the spectrum of these "broken" states and the filling order of the periodic table by energy levels both organizes and explains the hierarchy of frequencies.

  4. Work of Adhesion of a Sessile Drop to a Clean Surface.

    Science.gov (United States)

    Schroder

    1999-05-15

    According to the Young-Dupré equation, as interpreted by Bangham and Razouk, the work of adhesion of a sessile drop to a smooth solid surface is given by WS(V)L = gammaL (1 + cos θ), where θ is the equilibrium contact angle measured at equilibrium of the system with the saturated vapor of the liquid, and WS(V)L is the work of adhesion of that drop to the solid surface which is in equilibrium with that vapor and may contain an adlayer of the vapor. For calculation of WSL, the work of adhesion of a sessile drop to a clean solid surface, the equation WSL = gammaL (1 + cos θ) + Pie is generally used (although Bangham and Razouk never proposed it). Pie is the negative of the free energy of formation of the adlayer, sometimes called the spreading pressure. In the present work it is shown that the latter equation cannot be accurate. Copyright 1999 Academic Press.

  5. Risk of colorectal cancer in patients with sessile serrated adenomas/polyps is the same magnitude or even higher than in patients with conventinal adenomas

    DEFF Research Database (Denmark)

    Erichsen, Rune; Baron, John A; Snover, Dale;

    2014-01-01

    Risk of colorectal cancer in patients with sessile serrated adenomas/polyps is the same magnitude or even higher than in patients with conventinal adenomas......Risk of colorectal cancer in patients with sessile serrated adenomas/polyps is the same magnitude or even higher than in patients with conventinal adenomas...

  6. Comparison of the carbon stock in forest soil of sessile oak and beech forests

    Science.gov (United States)

    Horváth, Adrienn; Bene, Zsolt; Bidló, András

    2016-04-01

    Forest ecosystems are the most important carbon sinks. The forest soils play an important role in the global carbon cycle, because the global climate change or the increase of atmospheric CO2 level. We do not have enough data about the carbon stock of soils and its change due to human activities, which have similar value to carbon content of biomass. In our investigation we measured the carbon stock of soil in 10 stands of Quercus petraea and Fagus sylvatica. We took a 1.1 m soil column with soil borer and divided to 11 samples each column. The course organic and root residues were moved. After evaluation, we compared our results with other studies and the carbon stock of forests to each other. Naturally, the amount of SOC was the highest in the topsoil layers. However, we found significant difference between forest stands which stayed on the same homogenous bedrock, but very close to each other (e.g. distance was 1 or 2 km). We detected that different forest utilizations and tree species have an effect on the forest carbon as the litter as well (amount, composition). In summary, we found larger amount (99.1 C t/ha on average) of SOC in soil of stands, where sessile oak were the main stand-forming tree species. The amount of carbon was the least in turkey oak-sessile oak stands (85.4 C t/ha on average). We found the highest SOC (118.3 C t/ha) in the most mixed stand (silver lime-beech-red oak). In the future, it will be very important: How does climate change affect the spread of tree species or on carbon storage? Beech is more sensitive, but even sessile oak. These species are expected to replace with turkey oak, which is less sensitive to drought. Thus, it is possible in the future that we can expect to decrease of forest soil carbon stock capacity, which was confirmed by our experiment. Keywords: carbon sequestration, mitigation, Fagus sylvatica, Quercus petraea, litter Acknowledgements: Research is supported by the "Agroclimate.2" (VKSZ_12-1-2013-0034) EU

  7. Dynamics of sessile and pendant drops excited by surface acoustic waves: Gravity effects and correlation between oscillatory and translational motions.

    Science.gov (United States)

    Bussonnière, A; Baudoin, M; Brunet, P; Matar, O Bou

    2016-05-01

    When sessile droplets are excited by ultrasonic traveling surface acoustic waves (SAWs), they undergo complex dynamics with both oscillations and translational motion. While the nature of the Rayleigh-Lamb quadrupolar drop oscillations has been identified, their origin and their influence on the drop mobility remains unexplained. Indeed, the physics behind this peculiar dynamics is complex with nonlinearities involved both at the excitation level (acoustic streaming and radiation pressure) and in the droplet response (nonlinear oscillations and contact line dynamics). In this paper, we investigate the dynamics of sessile and pendant drops excited by SAWs. For pendant drops, so-far unreported dynamics are observed close to the drop detachment threshold with the suppression of the translational motion. Away from this threshold, the comparison between pendant and sessile drop dynamics allows us to identify the role played by gravity or, more generally, by an initial or dynamically induced stretching of the drop. In turn, we elucidate the origin of the resonance frequency shift, as well as the origin of the strong correlation between oscillatory and translational motion. We show that for sessile drops, the velocity is mainly determined by the amplitude of oscillation and that the saturation observed is due to the nonlinear dependence of the drop response frequency on the dynamically induced stretching. PMID:27300977

  8. Dynamics of sessile and pendant drops excited by surface acoustic waves: Gravity effects and correlation between oscillatory and translational motions

    Science.gov (United States)

    Bussonnière, A.; Baudoin, M.; Brunet, P.; Matar, O. Bou

    2016-05-01

    When sessile droplets are excited by ultrasonic traveling surface acoustic waves (SAWs), they undergo complex dynamics with both oscillations and translational motion. While the nature of the Rayleigh-Lamb quadrupolar drop oscillations has been identified, their origin and their influence on the drop mobility remains unexplained. Indeed, the physics behind this peculiar dynamics is complex with nonlinearities involved both at the excitation level (acoustic streaming and radiation pressure) and in the droplet response (nonlinear oscillations and contact line dynamics). In this paper, we investigate the dynamics of sessile and pendant drops excited by SAWs. For pendant drops, so-far unreported dynamics are observed close to the drop detachment threshold with the suppression of the translational motion. Away from this threshold, the comparison between pendant and sessile drop dynamics allows us to identify the role played by gravity or, more generally, by an initial or dynamically induced stretching of the drop. In turn, we elucidate the origin of the resonance frequency shift, as well as the origin of the strong correlation between oscillatory and translational motion. We show that for sessile drops, the velocity is mainly determined by the amplitude of oscillation and that the saturation observed is due to the nonlinear dependence of the drop response frequency on the dynamically induced stretching.

  9. Dendrochronological research in an artificially established sessile oak stand in the area of Fruška Gora

    Directory of Open Access Journals (Sweden)

    Stajić Branko

    2014-01-01

    Full Text Available This paper presents the first regional research of the chronologies of sessile oak trees and definition of the local (master chronology of sessile oak in the area of Fruška Gora. In addition, the aim of this study is to determine the strength of the common signal in the growth of sessile oak and its dendroclimatological potential under the given conditions. The quality of the local series of radial increment (chronology and the strength of the common and climatic signals were evaluated using the following parameters: average mean sensitivity, expressed population signal, signal-to-noise ratio and the variance explained by eigenvectors in the procedure of analysis of the principal components. The results have shown that the obtained master chronologies are of satisfactory quality and reliability, and that they contain a sufficient general common ”signal”, which is a characteristic of all analyzed trees that can be processed in all dendroclimatological analyses. It was concluded that, under the investigated site conditions, sessile oak showed low to medium sensitivity of reaction to the modifications of environmental conditions in the past 90 years. [Projekat Ministarstva nauke Republike Srbije: Šumski zasadi u funkciji povećanja pošumljenosti Srbije

  10. Characteristics and outcomes of endoscopically resected colorectal cancers that arose from sessile serrated adenomas and traditional serrated adenomas

    Science.gov (United States)

    Seo, Ji Yeon; Choi, Seung Ho; Chun, Jaeyoung; Choi, Ji Min; Jin, Eun Hyo; Hwang, Sung Wook; Im, Jong Pil; Kim, Sang Gyun; Kim, Joo Sung

    2016-01-01

    Background/Aims The efficacy and safety of endoscopic resection of colorectal cancer derived from sessile serrated adenomas or traditional serrated adenomas are still unknown. The aims of this study were to verify the characteristics and outcomes of endoscopically resected early colorectal cancers developed from serrated polyps. Methods Among patients who received endoscopic resection of early colorectal cancers from 2008 to 2011, cancers with documented pre-existing lesions were included. They were classified as adenoma, sessile serrated adenoma, or traditional serrated adenoma according to the baseline lesions. Clinical characteristics, pathologic diagnosis, and outcomes were reviewed. Results Overall, 208 colorectal cancers detected from 198 patients were included: 198 with adenoma, five with sessile serrated adenoma, and five with traditional serrated adenoma. The sessile serrated adenoma group had a higher prevalence of high-grade dysplasia (40.0% vs. 25.8%, Padenoma group. During follow-up, local recurrence did not occur after endoscopic resection of early colorectal cancers developed from serrated polyps. In contrast, two cases of metachronous recurrence were detected within a short follow-up period. Conclusions Cautious observation and early endoscopic resection are recommended when colorectal cancer from serrated polyp is suspected. Colorectal cancers from serrated polyp can be treated successfully with endoscopy. PMID:27433150

  11. Qualities of sessile serrated adenoma/polyp/lesion and its borderline variant in the context of synchronous colorectal carcinoma

    DEFF Research Database (Denmark)

    Mohammadi, Mahin; Kristensen, Michael Holmsgaard; Nielsen, Hans Jørgen;

    2012-01-01

    Although much data have accumulated on sessile serrated adenoma/polyp/lesion (SSA/P/L) in general, its characteristics in specified contexts are less well elucidated. This lack of knowledge is even more conspicuous concerning its borderline counterpart, referred to as BSSA/P/L. The previous histo...

  12. Insight into the Evaporation Dynamics of a Pair of Sessile Droplets on a Hydrophobic Substrate.

    Science.gov (United States)

    Shaikeea, Angkur Jyoti Dipanka; Basu, Saptarshi

    2016-02-01

    In this work, we have demonstrated three unique regimes in the evaporation lifecycle of a pair of sessile droplets placed in variable proximity on a hydrophobic substrate. For small separation distance, the droplets undergo asymmetric spatiotemporal evaporation leading to contact angle hysteresis and suppressed vaporization. The reduced evaporation has been attributed quantitatively to the existence of a constrained vapor-rich dome between the two droplets. However, a dynamic decrease in the droplet radius due to solvent removal marks a return to symmetry in terms of evaporation and contact angle. We have described the variation in evaporation flux using a universal correction factor. We have also demonstrated the existence of a critical separation distance beyond which the droplets in the droplet pair do not affect each other. The results are crucial to a plethora of applications ranging from surface patterning to lab-on-a-chip devices.

  13. Monitoring picoliter sessile microdroplet dynamics shows that size does not matter.

    Science.gov (United States)

    Rodríguez-Ruiz, Isaac; Hammadi, Zoubida; Grossier, Romain; Gómez-Morales, Jaime; Veesler, Stéphane

    2013-10-15

    We monitor the dissolution of arrayed picoliter-size sessile microdroplets of the aqueous phase in oil, generated using a recently developed fluidic device. Initial pinning of the microdroplet perimeter leads to a nearly constant contact diameter, thus contraction proceeds via microdroplet (micrometer-diameter) height and contact angle reductions. This confirms that picoliter microdroplets contraction or dissolution due to the selective diffusion of water in oil has comparable dynamics with microliter droplet evaporation in air. We observe a constant microdroplet dissolution rate in different aqueous solutions. The application of this simple model to solvent-diffusion-driven crystallization experiments in confined volumes, for instance, would allow us to determine precisely the concentration in the microdroplet during an experiment and particularly at nucleation. PMID:24070240

  14. Density of Liquid Ni-Mo Alloys Measured by a Modified Sessile Drop Method

    Institute of Scientific and Technical Information of China (English)

    Liang FANG; Zushu LI; ZaiNan TAO; Feng XIAO

    2004-01-01

    The density of liquid binary Ni-Mo alloys with molybdenum concentration from 0 to 20% (mass fraction) was measured by a modified sessile drop method. It has been found that the density of the liquid Ni-Mo alloys decreases with increasing temperature, but increases with the increase of molybdenum concentration in the alloys. The molar volume of liquid Ni-Mo binary alloys increases with the increase of temperature and molybdenum concentration. The partial molar volume of molybdenum in Ni-Mo binary alloy has been approximately calculated as [13.18 - 2.65 × 10-3T + (-47.94 + 3.10 × 10-2T) × 10-2XMo] × 10-6m3·mol-1. The molar volume of Ni-Mo alloy determined in the present work shows a negative deviation from the ideal linear mixing molar volume.

  15. Novel mobbing strategies of a fish population against a sessile annelid predator.

    Science.gov (United States)

    Lachat, Jose; Haag-Wackernagel, Daniel

    2016-01-01

    When searching for food, foraging fishes expose themselves to hidden predators. The strategies that maximize the survival of foraging fishes are not well understood. Here, we describe a novel type of mobbing behaviour displayed by foraging Scolopsis affinis. The fish direct sharp water jets towards the hidden sessile annelid predator Eunice aphroditois (Bobbit worm). We recognized two different behavioural roles for mobbers (i.e., initiator and subsequent participants). The first individual to exhibit behaviour indicating the discovery of the Bobbit directed, absolutely and per time unit, more water jets than the subsequent individuals that joined the mobbing. We found evidence that the mobbing impacted the behaviour of the Bobbit, e.g., by inducing retraction. S. affinis individuals either mob alone or form mobbing groups. We speculate that this behaviour may provide social benefits for its conspecifics by securing foraging territories for S. affinis. Our results reveal a sophisticated and complex behavioural strategy to protect against a hidden predator. PMID:27615670

  16. Effect of Heat Treatment upon Dimensional Stability and Static Bending Strength of Sessile Oak Wood

    Directory of Open Access Journals (Sweden)

    Alin OLARESCU

    2011-06-01

    Full Text Available The paper presents the results of an experimentalstudy performed with sessile oak wood (Quercuspetrea L.. After drying and conditioning at 12%MC,the test pieces were heat-treated at three differenthigh temperatures (120, 130 and 140°C for 1h, 2hand 3h. After the treatment and cooling, standardsamples for physical and mechanical tests were cut,in order to determine comparatively the density, thedimensional stability, the static bending strength andMOE of the differently treated samples.Based on the obtained results, the optimumtreatment schedule was established, namely the onewhich enables improved dimensional stability withoutaffecting significantly the wood strength. Theseresults can be applied at the manufacturing of solidwood panels with improved dimensional stabilityusing heat-treated wood lamellas.

  17. Precision stacking of nanoparticle laden sessile droplets to control solute deposit morphology

    Science.gov (United States)

    Kabi, Prasenjit; Basu, Saptarshi; Sanyal, Apratim; Chaudhuri, Swetaprovo

    2015-02-01

    Stacking pure solvent droplets on a solid substrate is apparently impossible in the absence of an external force as the second droplet will invariably spill over the first leading to a large wetted area. However, the unique feature that emerges during the drying of a nanoparticle laden droplet is the progressively enlarging thin solid film along the evaporating sessile droplet liquid periphery. This solid interface: the edge of which we shall refer to as the agglomeration front comprises of a thin layer of nanoparticle assembly and can support a carefully dispensed second droplet thereby allowing droplet stacking. It will be shown that the growth of this agglomeration front can also be effectively controlled by the dispensing time difference and the nanoparticle concentration in the two droplets. So far, we are commonly aware of material stacking in solid phase. This letter demonstrates stacking in the liquid phase and control over the thin solid interface growth.

  18. Evaporation of sessile drops containing colloidal rods: coffee-ring and order-disorder transition.

    Science.gov (United States)

    Dugyala, Venkateshwar Rao; Basavaraj, Madivala G

    2015-03-01

    Liquid drops containing insoluble solutes when dried on solid substrates leave distinct ring-like deposits at the periphery or along the three-phase contact line-a phenomena popularly known as the coffee-ring or the coffee stain effect. The formation of such rings as well as their suppression is shown to have applications in particle separation and disease diagnostics. We present an experimental study of the evaporation of sessile drops containing silica rods to elucidate the structural arrangement of particles in the ring, an effect of the addition of surfactant and salt. To this end, the evaporation of aqueous sessile drops containing model rod-like silica particles of aspect ratio ranging from ∼4 to 15 on a glass slide is studied. We first show that when the conditions such as (1) solvent evaporation, (2) nonzero contact angle, (3) contact line pinning, (4) no surface tension gradient driven flow, and (5) repulsive particle-particle/particle-substrate interactions, that are necessary for the formation of the coffee-ring are met, the suspension drops containing silica rods upon evaporation leave a ring-like deposit. A closer examination of the ring deposits reveals that several layers of silica rods close to the edge of the drop are ordered such that the major axis of the rods are oriented parallel to the contact line. After the first few layers of ordered arrangement of particles, a random arrangement of particles in the drop interior is observed indicating an order-disorder transition in the ring. We monitor the evolution of the ring width and particle velocity during evaporation to elucidate the mechanism of the order-disorder transition. Moreover, when the evaporation rate is lowered, the ordering of silica rods is observed to extend over large areas. We demonstrate that the nature of the deposit can be tuned by the addition of a small quantity of surfactant or salt.

  19. Evaporation of sessile drops containing colloidal rods: coffee-ring and order-disorder transition.

    Science.gov (United States)

    Dugyala, Venkateshwar Rao; Basavaraj, Madivala G

    2015-03-01

    Liquid drops containing insoluble solutes when dried on solid substrates leave distinct ring-like deposits at the periphery or along the three-phase contact line-a phenomena popularly known as the coffee-ring or the coffee stain effect. The formation of such rings as well as their suppression is shown to have applications in particle separation and disease diagnostics. We present an experimental study of the evaporation of sessile drops containing silica rods to elucidate the structural arrangement of particles in the ring, an effect of the addition of surfactant and salt. To this end, the evaporation of aqueous sessile drops containing model rod-like silica particles of aspect ratio ranging from ∼4 to 15 on a glass slide is studied. We first show that when the conditions such as (1) solvent evaporation, (2) nonzero contact angle, (3) contact line pinning, (4) no surface tension gradient driven flow, and (5) repulsive particle-particle/particle-substrate interactions, that are necessary for the formation of the coffee-ring are met, the suspension drops containing silica rods upon evaporation leave a ring-like deposit. A closer examination of the ring deposits reveals that several layers of silica rods close to the edge of the drop are ordered such that the major axis of the rods are oriented parallel to the contact line. After the first few layers of ordered arrangement of particles, a random arrangement of particles in the drop interior is observed indicating an order-disorder transition in the ring. We monitor the evolution of the ring width and particle velocity during evaporation to elucidate the mechanism of the order-disorder transition. Moreover, when the evaporation rate is lowered, the ordering of silica rods is observed to extend over large areas. We demonstrate that the nature of the deposit can be tuned by the addition of a small quantity of surfactant or salt. PMID:25521279

  20. The AHL- and BDSF-dependent quorum sensing systems control specific and overlapping sets of genes in Burkholderia cenocepacia H111.

    Directory of Open Access Journals (Sweden)

    Nadine Schmid

    Full Text Available Quorum sensing in Burkholderia cenocepacia H111 involves two signalling systems that depend on different signal molecules, namely N-acyl homoserine lactones (AHLs and the diffusible signal factor cis-2-dodecenoic acid (BDSF. Previous studies have shown that AHLs and BDSF control similar phenotypic traits, including biofilm formation, proteolytic activity and pathogenicity. In this study we mapped the BDSF stimulon by RNA-Seq and shotgun proteomics analysis. We demonstrate that a set of the identified BDSF-regulated genes or proteins are also controlled by AHLs, suggesting that the two regulons partially overlap. The detailed analysis of two mutually regulated operons, one encoding three lectins and the other one encoding the large surface protein BapA and its type I secretion machinery, revealed that both AHLs and BDSF are required for full expression, suggesting that the two signalling systems operate in parallel. In accordance with this, we show that both AHLs and BDSF are required for biofilm formation and protease production.

  1. Endoscopic mucosal resection of flat and sessile colorectal adenomas: Our experience with long-term follow-ups

    Directory of Open Access Journals (Sweden)

    Grgov Saša

    2014-01-01

    Full Text Available Bacground/Aim. Endoscopic mucosal resection (EMR or mucosectomy is a removing method of flat or sessile lesions, laterally spreading tumors and carcinoma of the colon or the rectum limited to mucosa or the surface part of the submucosa. The aim of the study was to estimate the efficacy and safety of EMR in removing flat and sessile colorectal adenomas. Methods. This prospective study involved 140 patients during the period of 8 years. A total of 187 colorectal adenomas were removed using the EMR method “inject and cut with snare”. Results. The approximate size of mucosectomised adenomas was 13.6 mm (from 8 mm to 60 mm. There was a total of 48 (25.7% flat adenomas and 139 (74.3% sessile adenomas, (p < 0.01. Using “en bloc” and “piecemeal” resection, 173 (92.5% and 14 (7.5% of colorectal adenomas were removed, respectively. In all the cases, a complete removal of colorectal adenomas was achieved. Two (1.4% patients had adenoma removal with intramucosal carcinoma each. In the average follow-up period of 21.2 ± 17.8 months, 2 (1.4% patients had adenoma relapse after EMR. Considering complications, there was bleeding in 1 (0.7% patient with a big rectum adenoma removed with EMR. Furthermore, one (0.7% patient had a postcoagulation syndrome after cecal adenoma was removed by EMR. Conclusion. EMR is an efficient, safe and minimally invasive technique of removing flat and sessile adenomas in the colon and the rectum, with a very low percentage of adenoma recurrence over a long period of monitoring.

  2. Speciation, diversification, and coexistence of sessile species that compete for space.

    Directory of Open Access Journals (Sweden)

    Namiko Mitarai

    Full Text Available Speciation, diversification, and competition between species challenge the stability of complex ecosystems. Laboratory experiments often focus on one or two species competing under conditions where they may grow exponentially. Field studies, in contrast, emphasize multi-species communities characterized by many types of ecological interactions. A general problem is to understand conditions that support a dynamically maintained coexistence of many species in an ecosystem over a long time span. In the present paper we propose a lattice model of multiple competing and evolving sessile species. When allowing the interspecies interactions to mutate, we obtain coexistence of many species in a complex ecosystem, provided that there is a cost for each interaction. The diversity reached by the model incorporating speciation is found to be substantially higher than in the case when entirely new species appear due to immigration from outside of the considered ecosystem. The species self-organize their spatial distribution through competitive interactions to create many patches, implicitly protecting each other from competitively superior species, and speciation in each patch leads the system to high diversity. We also show that species that exist a long time tend to have a relatively small population, as this allows them to avoid encounter with competitive invaders.

  3. Measuring the Nonuniform Evaporation Dynamics of Sprayed Sessile Microdroplets with Quantitative Phase Imaging.

    Science.gov (United States)

    Edwards, Chris; Arbabi, Amir; Bhaduri, Basanta; Wang, Xiaozhen; Ganti, Raman; Yunker, Peter J; Yodh, Arjun G; Popescu, Gabriel; Goddard, Lynford L

    2015-10-13

    We demonstrate real-time quantitative phase imaging as a new optical approach for measuring the evaporation dynamics of sessile microdroplets. Quantitative phase images of various droplets were captured during evaporation. The images enabled us to generate time-resolved three-dimensional topographic profiles of droplet shape with nanometer accuracy and, without any assumptions about droplet geometry, to directly measure important physical parameters that characterize surface wetting processes. Specifically, the time-dependent variation of the droplet height, volume, contact radius, contact angle distribution along the droplet's perimeter, and mass flux density for two different surface preparations are reported. The studies clearly demonstrate three phases of evaporation reported previously: pinned, depinned, and drying modes; the studies also reveal instances of partial pinning. Finally, the apparatus is employed to investigate the cooperative evaporation of the sprayed droplets. We observe and explain the neighbor-induced reduction in evaporation rate, that is, as compared to predictions for isolated droplets. In the future, the new experimental methods should stimulate the exploration of colloidal particle dynamics on the gas-liquid-solid interface.

  4. Electric field control of a fluid transfer between freely suspended and sessile droplets

    Science.gov (United States)

    Choi, Suhwan; Saveliev, Alexei

    2015-11-01

    This works explore direct fluid transfer between microdroplets using liquid bridges stabilized by ac electric field. Experiments are performed with freely and sessile microdroplets of pure glycerol and water with dye. The droplets are placed along electric field directions in a cell with parallel plate electrodes filled with silicone oil. The electrical conductivity of droplets is changed from 1 to 200 μS/cm by adding dye solutions. Liquid bridges interconnecting two microdroplets can be created using an alternating electric field from 0.3 to 0.7 kV/mm with a frequency of 10.3 kHz. For such bridging fluid can be transferred through the liquid bridge from one droplet to another due to the pressure difference. The process is recorded using a CCD camera. The fluid flowrates in the range from ~ 100 to 10 nL/s are recorded with different electric fields and liquid conductivity. We propose that the manipulation of the liquid bridge will be the method in which small fluid volumes are dispensed.

  5. Speciation, diversification, and coexistence of sessile species that compete for space.

    Science.gov (United States)

    Mitarai, Namiko; Heinsalu, Els; Sneppen, Kim

    2014-01-01

    Speciation, diversification, and competition between species challenge the stability of complex ecosystems. Laboratory experiments often focus on one or two species competing under conditions where they may grow exponentially. Field studies, in contrast, emphasize multi-species communities characterized by many types of ecological interactions. A general problem is to understand conditions that support a dynamically maintained coexistence of many species in an ecosystem over a long time span. In the present paper we propose a lattice model of multiple competing and evolving sessile species. When allowing the interspecies interactions to mutate, we obtain coexistence of many species in a complex ecosystem, provided that there is a cost for each interaction. The diversity reached by the model incorporating speciation is found to be substantially higher than in the case when entirely new species appear due to immigration from outside of the considered ecosystem. The species self-organize their spatial distribution through competitive interactions to create many patches, implicitly protecting each other from competitively superior species, and speciation in each patch leads the system to high diversity. We also show that species that exist a long time tend to have a relatively small population, as this allows them to avoid encounter with competitive invaders. PMID:24819515

  6. Microscale fibre alignment by a three-dimensional sessile drop on a wettable pad

    Science.gov (United States)

    Reznik, S. N.; Salalha, W.; Yarin, A. L.; Zussman, E.

    Fluidic assembly provides solutions for assembling particles with sizes from nano- metres to centimetres. Fluidic techniques based on patterned shapes of monolayers and capillary forces are widely used to assemble microfabrication devices. Usually, for self-assembly, the precondition is that the components must be mobile in a fluidic environment. In the present work, a shape-directed fluidic self-assembly of rod-like microstructures, such as an optical fibre on a wettable pad is demonstrated experimentally with submicrometre positioning precision. A model of the process is proposed, which accounts for the following two stages of the orientation of a fibre submerged in a sessile drop: (i) the drop melting and spreading over a wettable pad; (ii) fibre reorientation related to the surface-tension-driven shrinkage of the drop surface area. At the end of stage (ii), the fibre is oriented along the pad. The experi- mental results for the optical-fibre assembly by a solder joint have been compared to the modelling results, and a reasonable agreement has been found. The major outcome of the experiments and modelling is that surface tension forces on the fibre piercing a drop align the fibre rather than the flow owing to the spreading of the drop over the horizontal pad, i.e. stage (ii) mostly contributes to the alignment.

  7. Fracture toughness from atomistic simulations: Brittleness induced by emission of sessile dislocations

    Energy Technology Data Exchange (ETDEWEB)

    Farkas, D. [Virginia Polytechnic Inst. and State Univ., Blacksburg, VA (United States). Dept. of Materials Science and Engineering

    1998-08-04

    Using atomistic simulations of crack response for intermetallic materials the author shows that when the emitted dislocations are sessile and stay in the immediate vicinity of the crack tip the emitted dislocations can actually lead to brittle failure. She present the results of an atomistic simulation study of the simultaneous dislocation emission and crack propagation process in this class of materials. She used a molecular statics technique with embedded atom (EAM) potentials developed for NiAl. The crystal structure of NiAl is the CsCl type (B2) with a lattice parameter of 0.287 nm, which is reproduced by the potential together with the cohesive energy and elastic constants. The compound stays ordered up to the melting point, indicating a strong tendency towards chemical ordering with a relatively high energy of the antiphase boundary (APB). As a result of this relatively large energy the dislocations of 1/2<111> type Burgers vectors imply a high energy and the deformation process occurs via the larger <100> type dislocations.

  8. Volume evolution of small sessile droplets evaporating in stick-slip mode

    Science.gov (United States)

    Hu, Dinghua; Wu, Huiying

    2016-04-01

    This work is aimed at developing a simple and efficient predictive model and revealing the volume evolution behavior of small sessile droplets evaporating in stick-slip (SS) mode, covering a wide range of initial (θ0) and receding (θrec) contact angles (0 ∘CCA) modes (i.e., two extreme modes); however, on a hydrophobic surface (θ0>90 ∘ ), as θrec increases from 0 to θ0, the volume evolution of droplets in SS mode first departs from the CCR mode, then approaches the SS mode with θrec=90 ∘ , and finally returns to the CCA mode. More interestingly, the initially identical droplets evaporating on hydrophobic surfaces with different receding contact angles (θrec=90∘±Δ θ ) can even have approximately the same volume evolution behavior. It is also found that the widely accepted 2/3 law is applicable only for volume evolution of droplets in SS mode with large initial contact angle or small contact angle hysteresis, with the predicted deviation less than 1.5% for θ0≥150∘ or θ0≥50∘ when θ0-θrec≤15∘ . Finally, a physical interpretation for the volume evolution behaviors of droplets in SS mode is proposed.

  9. Density of liquid NiCoAlCr quarternary alloys measured by modified sessile drop method

    Institute of Scientific and Technical Information of China (English)

    FANG Liang; ZHANG Shu-fang; XIAO Feng; YANG Ling-chuan; DONG Jian-xin; CAO Chun-lan; TAO Zai-nan; K. MUKAI

    2006-01-01

    The densities of liquid NiCoAlCr quaternary alloys with a fixed molar ratio of Ni to Co to Al (x(Ni)-x(Co)-x(Al)≈73-12-15) which is close to the average value of the commercial Ni-based superalloys TMS75, INCO713, CM247LC and CMSX-4, and the mass fraction of chromium changes from 0 to 9% were measured by a modified sessile drop method. It is found that with increasing temperature and chromium concentration in the alloys, the densities of the liquid NiCoAlCr quaternary alloys decrease, whereas the molar volume of the liquid NiCoAlCr quaternary alloys increases. And the liquid densities of NiCoAlCr quaternary alloys calculated from the partial molar volumes of nickel, cobalt, aluminum and chromium in the corresponding Ni-bases binary alloys are in good agreement with the experimental ones, i.e. within the error tolerance range the densities of the liquid Ni-based multi-component alloys can be predicted from the partial volumes of elements in Ni-based binary alloys in liquid state. The molar volume of liquid NiCoAlCr binary alloy shows a negative deviation from the ideal linear mixing and the deviation changes small with the increase of chromium concentration at the same temperature.

  10. Think laterally: horizontal gene transfer from symbiotic microbes may extend the phenotype of marine sessile hosts

    Directory of Open Access Journals (Sweden)

    Sandie M Degnan

    2014-11-01

    Full Text Available Since the origin of the animal kingdom, marine animals have lived in association with viruses, prokaryotes and unicellular eukaryotes, often as symbionts. This long and continuous interaction has provided ample opportunity not only for the evolution of intimate interactions such as sharing of metabolic pathways, but also for horizontal gene transfer (HGT of non-metazoan genes into metazoan genomes. The number of demonstrated cases of inter-kingdom HGT is currently small, such that it is not yet widely appreciated as a significant player in animal evolution. Sessile marine invertebrates that vertically inherit bacterial symbionts, that have no dedicated germ line, or that bud or excise pluripotent somatic cells during their life history may be particularly receptive to HGT from their symbionts. Closer scrutiny of the growing number of genomes being accrued for these animals may thus reveal HGT as a regular source of novel variation that can function to extend the host phenotype metabolically, morphologically or even behaviourally. Taxonomic identification of symbionts will help to address the intriguing question of whether past HGT events may constrain contemporary symbioses.

  11. Effect of low Reynolds number flow on the quorum sensing behavior of sessile bacteria

    Science.gov (United States)

    Ingremeau, Francois; Minyoung, Kevin Kim; Bassler, Bonnie; Stone, Howard; Mechanical; Aerospace Engineering, Complex fluids Group Team; Molecular Biology Lab Team

    2014-11-01

    Sessile and planktonic bacteria can be sensitive to the bacteria cell density around them through a chemical mediated communication called quorum sensing. When the quorum sensing molecules reach a certain value, the metabolism of the bacteria changes. Quorum sensing is usually studied in static conditions or in well mixed environments. However, bacteria biofilms can form in porous media or in the circulatory system of an infected body: quorum sensing in such flowing environment at low Reynolds number is not well studied. Using microfluidic devices, we observe how the flow of a pure media affects quorum sensing of bacteria attached to the wall. The biofilm formation is quantified by measuring the optical density in brightfield microscopy and the quorum sensing gene expression is observed through the fluorescence of a green fluorescent protein, which is a reporter for one of the quorum sensing genes. We measured without flow the amount of Staphylococcus aureus biofilm when the quorum sensing gene expression starts. In contrast, when the media is flowing in the microchannel, the quorum sensing expression is delayed. This effect can be understood and modelled by considering the diffusion of the quorum sensing molecules in the biofilm and their convection by the flowing media.

  12. Streaming driven by sessile microbubbles: Explaining flow patterns and frequency response

    Science.gov (United States)

    Rallabandi, Bhargav; Wang, Cheng; Guo, Lin; Hilgenfeldt, Sascha

    2013-11-01

    Ultrasound excitation of bubbles drives powerful steady streaming flows which have found widespread applications in microfluidics, where bubbles are typically of semicircular cross section and attached to walls of the device (sessile). While bubble-driven streaming in bulk fluid is well understood, this practically relevant case presents additional complexity introduced by the wall and contact lines. We develop an asymptotic theory that takes into account the presence of the wall as well as the oscillation dynamics of the bubble, providing a complete description of the streaming flow as a function only of the driving frequency, the bubble size, and the physical properties of the fluid. We show that the coupling between different bubble oscillation modes sustains the experimentally observed streaming flow vortex pattern over a broad range of frequencies, greatly exceeding the widths of individual mode resonances. Above a threshold frequency, we predict, and observe in experiment, reversal of the flow direction. Our analytical theory can be used to guide the design of microfluidic devices, both in situations where robust flow patterns insensitive to parameter changes are desired (e.g. lab-on-a-chip sorters), and in cases where intentional modulation of the flow field appearance is key (e.g. efficient mixers). Current address: Department of Mechanical and Aerospace Engineering, Missouri University of Science and Technology.

  13. Single port VATS resection of a sessile solitary fibrous tumour of the visceral pleura. A case report.

    Science.gov (United States)

    Mazzella, Antonio; Izzo, Alessandro; Amore, Dario; Cennamo, Antonio; Cerqua, Francesco Saverio; Perrotta, Fabio

    2015-09-24

    Il tumore fibroso solitario della pleura viscerale è una neoplasia rara che deriva dalle cellule mesenchimali adiacenti al tessuto mesoteliali di pleura. La resezione chirurgica è il trattamento di scelta nelle sia nelle lesione benigne che maligne. La recidiva locale può essere il risultato di una chirurgia incompleta o conservatrice, di una mancanza di identificazione dei lembi del tumore durante l’operazione o di crescita di una neoplasia sincrona indipendente da quello rimossa. La resezione chirurgica è anche gravata da qualche difficoltà come la dimensione del tumore, il rapporto con le strutture anatomiche viciniori e la identificazione del peduncolo vascolare. Riportiamo un caso di un uomo di 72 anni con un tumore fibroso solitario sessile della pleura viscerale. Il paziente è stato trattato mediante videotoracoscopia con approccio uniportale. Questo caso, rappresenta una resezione in VATS uniportale di un SFTP sessile con ampia base di impianto. In letteratura, solo due casi di SFTP sono stati trattati mediante approccio uniportale. In tutti i due casi, il tumore era piccolo (4x3 cm nel primo, nel secondo 33 x 22mm) e peduncolato. Nel nostro caso, si parla di un STFP di dimensioni maggiore, sessile e con larga base di impianto. I vantaggi dell’approccio uniportale rispetto alla tradizionale VATS triportale sono la riduzione del dolore post-operatorio, la minore durata di utilizzo dei tubi di drenaggio, la ridotta degenza ospedaliera ed un miglior risultato estetico.

  14. Influence of culture media on biofilm formation by Candida species and response of sessile cells to antifungals and oxidative stress.

    Science.gov (United States)

    Serrano-Fujarte, Isela; López-Romero, Everardo; Reyna-López, Georgina Elena; Martínez-Gámez, Ma Alejandrina; Vega-González, Arturo; Cuéllar-Cruz, Mayra

    2015-01-01

    The aims of the study were to evaluate the influence of culture media on biofilm formation by C. albicans, C. glabrata, C. krusei, and C. parapsilosis and to investigate the responses of sessile cells to antifungals and reactive oxygen species (ROS) as compared to planktonic cells. For biofilm formation, the Candida species were grown at different periods of time in YP or YNB media supplemented or not with 0.2 or 2% glucose. Sessile and planktonic cells were exposed to increasing concentrations of antifungals, H2O2, menadione or silver nanoparticles (AgNPs). Biofilms were observed by scanning electron microscopy (SEM) and quantified by the XTT assay. C. albicans formed biofilms preferentially in YPD containing 2% glucose (YPD/2%), C. glabrata in glucose-free YNB or supplemented with 0.2% glucose (YNB/0.2%), while C. krusei and C. parapsilosis preferred YP, YPD/0.2%, and YPD/2%. Interestingly, only C. albicans produced an exopolymeric matrix. This is the first report dealing with the in vitro effect of the culture medium and glucose on the formation of biofilms in four Candida species as well as the resistance of sessile cells to antifungals, AgNPs, and ROS. Our results suggest that candidiasis in vivo is a multifactorial and complex process where the nutritional conditions, the human immune system, and the adaptability of the pathogen should be considered altogether to provide an effective treatment of the patient.

  15. - A case study for sessile oak (Quercus petraea) distribution - Preliminarly results of a Decision Support System for climate impact analysis

    Science.gov (United States)

    Gulyás, Krisztina; Gálos, Borbála; Berki, Imre; Czimber, Kornél

    2014-05-01

    Rainfed sectors of forestry are threatened by projected climate change especially in low-elevation regions in Southeast Europe, where precipitation is the limiting factor of production and ecosystem stability. To initiate preparation for frequency increase of extreme events, disasters and economic losses, a Decision Support System is under development, which provides GIS-supported information about the most important regional and local risks and mitigation options regarding climate change impacts. The case study will focus on the following aspects: • For the time period 1961-2010, precipitation and temperature means and extreme events have been analyzed in the Carpathian basin, using gridded station data from the EU-project CARPATCLIM (http://www.carpatclim-eu.org). • The climate indicators have been identified that characterize and determine the distribution, healty status and vitality of sessile oak. • As a product of the Decision Support System a distribution model is under development, which describes the connection between climate conditions and the distribution of sessile oak. The case study shows, how climate data can be used for impact analyses in the forestry sector. Applying different climate change scenarios, the expected distribution of tree species can be simulated. Acknowledgements: The development of the Decision Support System "Agrárklíma" is supported by TÁMOP-4.2.2.A-11/1/KONV and 4.2.2.B-10/1-2010-0018 "Talentum" joint EU-national research projects. Keywords: climate change, decision support system, distribution model, sessile oak

  16. Different harvest intensity and soil CO2 efflux in sessile oak coppice forests

    Directory of Open Access Journals (Sweden)

    Darenova E

    2016-08-01

    Full Text Available Soil CO2 efflux accounts for about 45-80% of total ecosystem respiration and is therefore an important part of the ecosystem carbon cycle. Soil CO2 efflux has been poorly studied in forests managed in the ancient coppicing manner. In our study, soil CO2 efflux, temperature, and moisture were measured in sessile oak stands with different harvesting intensity (control: 0% intensity; V1: 75%; V2: 80 %; V3: 85%; and V4: 100% during the fifth and sixth years after harvesting. Soil CO2 efflux was in the range 2-8 µmol CO2 m-2 s-1 and indicated an increasing pattern with increasing harvesting intensity. The slope of that pattern became less steep from the fifth to the sixth year after harvesting, thus indicating gradual recovery of soil carbon dynamics in the coppiced stand toward the equilibrium state existing before harvesting. Temperature sensitivity of soil CO2 efflux ranged between 2.1 and 2.8, with the lowest values measured in the control stand. Soil CO2 efflux in the control stand was more sensitive to changes in soil moisture than was that on harvested plots. By our calculations, 6.2 tC ha-1 was released from the control stand and 6.2-6.8 tC ha-1 from the harvested stands during the sixth year after harvesting. If mean temperature were to rise by 1 °C, the amount of soil carbon released would increase by 7.7% in the control stand and, depending on harvesting intensity, by 9.0-10.8% in the harvested stands.

  17. Line tension and morphology of a sessile droplet on a spherical substrate.

    Science.gov (United States)

    Iwamatsu, Masao

    2016-05-01

    The effects of line tension on the morphology of a sessile droplet placed on top of a convex spherical substrate are studied. The morphology of the droplet is determined from the global minimum of the Helmholtz free energy. The contact angle between the droplet and the spherical substrate is expressed by the generalized Young's formula. When the line tension is positive and large, the contact angle jumps discontinuously to 180^{∘}, the circular contact line shrinks towards the top of the substrate, and the droplet detaches from the substrate, forming a spherical droplet if the substrate is hydrophobic (i.e., the Young's contact angle is large). This finding is consistent with that predicted by Widom [J. Phys. Chem. 99, 2803 (1995)JPCHAX0022-365410.1021/j100009a041]; the line tension induces a drying transition on a flat substrate. On the other hand, the contact angle jumps to 0^{∘}, the circular contact line shrinks towards the bottom of the substrate, and the droplet spreads over the substrate to form a wrapped spherical droplet if the substrate is hydrophilic (i.e., the Young's contact angle is small). Therefore, not only the drying transition of a cap-shaped to a detached spherical droplet but also the wetting transition of a cap-shaped to a wrapped spherical droplet could occur on a spherical substrate as the surface area of the substrate is finite. When the line tension is negative and its magnitude increases, the contact line asymptotically approaches the equator from either above or below. The droplet with a contact line that coincides with the equator is an isolated, singular solution of the first variational problem. In this instance, the contact line is pinned and cannot move as far as the line tension is smaller than the critical magnitude, where the wetting transition occurs. PMID:27300961

  18. Loss of expression and promoter methylation of SLIT2 are associated with sessile serrated adenoma formation.

    Directory of Open Access Journals (Sweden)

    Andrew D Beggs

    2013-05-01

    Full Text Available Serrated adenomas form a distinct subtype of colorectal pre-malignant lesions that may progress to malignancy along a different molecular pathway than the conventional adenoma-carcinoma pathway. Previous studies have hypothesised that BRAF mutation and promoter hypermethylation plays a role, but the evidence for this is not robust. We aimed to carry out a whole-genome loss of heterozygosity analysis, followed by targeted promoter methylation and expression analysis to identify potential pathways in serrated adenomas. An initial panel of 9 sessile serrated adenomas (SSA and one TSA were analysed using Illumina Goldengate HumanLinkage panel arrays to ascertain regions of loss of heterozygosity. This was verified via molecular inversion probe analysis and microsatellite analysis of a further 32 samples. Methylation analysis of genes of interest was carried out using methylation specific PCR (verified by pyrosequencing and immunohistochemistry used to correlate loss of expression of genes of interest. All experiments used adenoma samples and normal tissue samples as control. SSA samples were found on whole-genome analysis to have consistent loss of heterozygosity at 4p15.1-4p15.31, which was not found in the sole TSA, adenomas, or normal tissues. Genes of interest in this region were PDCH7 and SLIT2, and combined MSP/IHC analysis of these genes revealed significant loss of SLIT2 expression associated with promoter methylation of SLIT2. Loss of expression of SLIT2 by promoter hypermethylation and loss of heterozygosity events is significantly associated with serrated adenoma development, and SLIT2 may represent a epimutated tumour suppressor gene according to the Knudson "two hit" hypothesis.

  19. Loss of expression and promoter methylation of SLIT2 are associated with sessile serrated adenoma formation.

    Science.gov (United States)

    Beggs, Andrew D; Jones, Angela; Shepherd, Neil; Arnaout, Abed; Finlayson, Caroline; Abulafi, A Muti; Morton, Dion G; Matthews, Glenn M; Hodgson, Shirley V; Tomlinson, Ian P M

    2013-05-01

    Serrated adenomas form a distinct subtype of colorectal pre-malignant lesions that may progress to malignancy along a different molecular pathway than the conventional adenoma-carcinoma pathway. Previous studies have hypothesised that BRAF mutation and promoter hypermethylation plays a role, but the evidence for this is not robust. We aimed to carry out a whole-genome loss of heterozygosity analysis, followed by targeted promoter methylation and expression analysis to identify potential pathways in serrated adenomas. An initial panel of 9 sessile serrated adenomas (SSA) and one TSA were analysed using Illumina Goldengate HumanLinkage panel arrays to ascertain regions of loss of heterozygosity. This was verified via molecular inversion probe analysis and microsatellite analysis of a further 32 samples. Methylation analysis of genes of interest was carried out using methylation specific PCR (verified by pyrosequencing) and immunohistochemistry used to correlate loss of expression of genes of interest. All experiments used adenoma samples and normal tissue samples as control. SSA samples were found on whole-genome analysis to have consistent loss of heterozygosity at 4p15.1-4p15.31, which was not found in the sole TSA, adenomas, or normal tissues. Genes of interest in this region were PDCH7 and SLIT2, and combined MSP/IHC analysis of these genes revealed significant loss of SLIT2 expression associated with promoter methylation of SLIT2. Loss of expression of SLIT2 by promoter hypermethylation and loss of heterozygosity events is significantly associated with serrated adenoma development, and SLIT2 may represent a epimutated tumour suppressor gene according to the Knudson "two hit" hypothesis.

  20. Line tension and morphology of a sessile droplet on a spherical substrate

    Science.gov (United States)

    Iwamatsu, Masao

    2016-05-01

    The effects of line tension on the morphology of a sessile droplet placed on top of a convex spherical substrate are studied. The morphology of the droplet is determined from the global minimum of the Helmholtz free energy. The contact angle between the droplet and the spherical substrate is expressed by the generalized Young's formula. When the line tension is positive and large, the contact angle jumps discontinuously to 180∘, the circular contact line shrinks towards the top of the substrate, and the droplet detaches from the substrate, forming a spherical droplet if the substrate is hydrophobic (i.e., the Young's contact angle is large). This finding is consistent with that predicted by Widom [J. Phys. Chem. 99, 2803 (1995), 10.1021/j100009a041]; the line tension induces a drying transition on a flat substrate. On the other hand, the contact angle jumps to 0∘, the circular contact line shrinks towards the bottom of the substrate, and the droplet spreads over the substrate to form a wrapped spherical droplet if the substrate is hydrophilic (i.e., the Young's contact angle is small). Therefore, not only the drying transition of a cap-shaped to a detached spherical droplet but also the wetting transition of a cap-shaped to a wrapped spherical droplet could occur on a spherical substrate as the surface area of the substrate is finite. When the line tension is negative and its magnitude increases, the contact line asymptotically approaches the equator from either above or below. The droplet with a contact line that coincides with the equator is an isolated, singular solution of the first variational problem. In this instance, the contact line is pinned and cannot move as far as the line tension is smaller than the critical magnitude, where the wetting transition occurs.

  1. Strategy of seedlings to overcome their sessile nature: auxin in the mobility control

    Directory of Open Access Journals (Sweden)

    Petra eZadnikova

    2015-04-01

    Full Text Available Plants are sessile organisms that are permanently restricted to their site of germination. Tocompensate for their lack of mobility, plants evolved unique mechanisms enabling them torapidly react to ever changing environmental conditions and flexibly adapt their postembryonicdevelopmental program. A prominent demonstration of this developmental plasticity is theirability to bend organs in order to reach the position most optimal for growth and utilization oflight, nutrients, and other resources. Shortly after germination, dicotyledonous seedlings form abended structure, the so-called apical hook, to protect the delicate shoot meristem andcotyledons from damage when penetrating through the soil. Upon perception of a lightstimulus, the apical hook rapidly opens and the photomorphogenic developmental program isactivated. After germination, plant organs are able to align their growth with the light sourceand adopt the most favorable orientation through bending, in a process named phototropism.On the other hand, when roots and shoots are diverted from their upright orientation, theyimmediately detect a change in the gravity vector and bend to maintain a vertical growthdirection.Noteworthy, despite the diversity of external stimuli perceived by different plantorgans, all plant tropic movements share a common mechanistic basis: differential cell growth.In our review, we will discuss the molecular principles underlying various tropic responses withthe focus on mechanisms mediating the perception of external signals, transduction cascadesand downstream responses that regulate differential cell growth and consequently, organbending. In particular, we highlight common and specific features of regulatory pathways incontrol of the bending of organs and a role for the plant hormone auxin as a key regulatorycomponent.

  2. Production potential of the soil and the basic elements of productivity of the most widely spred sessil types in the u. N.P. „Đerdap”

    Directory of Open Access Journals (Sweden)

    Knežević Milan

    2010-01-01

    Full Text Available This paper is on the results of the soil and its production potential in the types of forests of sessile oaks (Quercus petraea in the area of the National Park „Đerdap” in the community units of Zlatica, Đerdap, Štrbačko korito, Desna reka and Kožica. There are the most widely spread types of the sprout forests of the sessile oaks in the research area, deep deluvium, luvisoil, eutric cambsoils, and a great number of subtypes of acid brown soil. Considering the fact that the production potential of the defined types of soil depends on the depth, skeleton and other physical characteristics which determine acception, keeping and moving of water and this means that the production value of the studied soils is in the direct correlation with physical-geographical conditions of the environment. Taking into account that solum is well developed and the low contents of skeleton, all the studied soil in the most widely spread types of sessile oaks in the area of N.P. „Đerdap”, are very productive natural habitats. The exception is acid brown soil, which characteristics vary as well as their production potential. Apart from a good production potential of the studied soils within this paper, sessile forests in the researched areas irrationally use production potential of the habitat. In the research area in the last 20 years, the processes of devitalizing and the appearance of decaying of sessile oaks are expressed. In the sessile forests of Serbia, there are forests of the production and protection character, and the structure of the sessile forests at global level is characterized by not normal state with domination of middle aged and in great extent mature withering ingredients, what is the main cause of insufficiently used good potential of the soil.

  3. Towards universal buckling dynamics in nanocolloidal sessile droplets: the effect of hydrophilic to superhydrophobic substrates and evaporation modes.

    Science.gov (United States)

    Basu, Saptarshi; Bansal, Lalit; Miglani, Ankur

    2016-06-14

    The evaporation of a nanocolloidal sessile droplet exhibits preferential particle assembly, nanoporous shell formation and buckling to form cavities with unique morphological features. Here, we have established many universal trends that explain the buckling dynamics under one umbrella irrespective of hydrophobicity, evaporation mode and particle loading. We provide a regime map explaining the droplet morphology and buckling characteristics for droplet evaporation on various substrates. Specifically, we find that the final droplet volume and the radius of curvature at the buckling onset are universal functions of particle concentration. Furthermore, we establish that post-buckling cavity growth is evaporation driven regardless of the substrate.

  4. A phase field description of self-propulsion of twin sessile drops induced by surface tension gradients

    International Nuclear Information System (INIS)

    We describe the self-propulsion of two sessile drops induced by surface tension gradients at the droplet interfaces using a three-dimensional phase field model. We study the problem for the low viscosity regime when the width of the connecting neck between the interacting drops increases linearly with increasing t1/2 and the merger is dominated by capillary forces. We investigate the dependence of the displacement achieved by self-propulsion on viscous shearing as well as the internal flow structure during the coalescence process. (paper)

  5. Evaporating sessile droplet pair: Insights into contact line motion, flow transitions and emergence of universal vaporisation pattern

    Science.gov (United States)

    Shaikeea, Angkur Jyoti Dipanka; Basu, Saptarshi

    2016-06-01

    We have deciphered that the vaporization rate of a pair of sessile droplets placed in a close vicinity of each other not only gets suppressed but also approached a universal pattern in the long time asymptotic limit, irrespective of substrate hydrophobicity. In a short time, these droplets exhibit a series of naturally evolving characteristics such as alteration of evaporation modes, flow transitions, asymmetric deformation, and motion of the contact line. Such dynamics are uniquely determined by the degree of pinning. In addition, we show that the enhanced hydrophobicity does not always lead to lower evaporation rate in droplets.

  6. Antimicrobial Activity of Penicillin G and N-acetylcystein on Planktonic and Sessile Cells of Streptococcus suis.

    Science.gov (United States)

    Espinosa, Ivette; Báez, Michel; Lobo, Evelyn; Martínez, Siomara; Gottschalk, Marcelo

    2016-01-01

    The aim of this study was to investigate the capacity of Streptococcus suis strains to form biofilms and to evaluate the antimicrobial activity of Penicillin G and N-acetylcystein (NAC) on both S. suis sessile and planktonic forms. Only non-typeable isolates of S. suis were correlated with a greater biofilm formation capacity. The MCI of Penicillin G and NAC required for inhibiting biofilm growth were higher than the required concentration for inhibiting planktonic growth. The combinations of NAC and Penicillin G showed a strong synergistic activity that inhibited biofilm formation and disrupted the pre-formed biofilm of S. suis. PMID:27282001

  7. Sessile snails, dynamic genomes: gene rearrangements within the mitochondrial genome of a family of caenogastropod molluscs

    Directory of Open Access Journals (Sweden)

    Bieler Rüdiger

    2010-07-01

    Full Text Available Abstract Background Widespread sampling of vertebrates, which comprise the majority of published animal mitochondrial genomes, has led to the view that mitochondrial gene rearrangements are relatively rare, and that gene orders are typically stable across major taxonomic groups. In contrast, more limited sampling within the Phylum Mollusca has revealed an unusually high number of gene order arrangements. Here we provide evidence that the lability of the molluscan mitochondrial genome extends to the family level by describing extensive gene order changes that have occurred within the Vermetidae, a family of sessile marine gastropods that radiated from a basal caenogastropod stock during the Cenozoic Era. Results Major mitochondrial gene rearrangements have occurred within this family at a scale unexpected for such an evolutionarily young group and unprecedented for any caenogastropod examined to date. We determined the complete mitochondrial genomes of four species (Dendropoma maximum, D. gregarium, Eualetes tulipa, and Thylacodes squamigerus and the partial mitochondrial genomes of two others (Vermetus erectus and Thylaeodus sp.. Each of the six vermetid gastropods assayed possessed a unique gene order. In addition to the typical mitochondrial genome complement of 37 genes, additional tRNA genes were evident in D. gregarium (trnK and Thylacodes squamigerus (trnV, trnLUUR. Three pseudogenes and additional tRNAs found within the genome of Thylacodes squamigerus provide evidence of a past duplication event in this taxon. Likewise, high sequence similarities between isoaccepting leucine tRNAs in Thylacodes, Eualetes, and Thylaeodus suggest that tRNA remolding has been rife within this family. While vermetids exhibit gene arrangements diagnostic of this family, they also share arrangements with littorinimorph caenogastropods, with which they have been linked based on sperm morphology and primary sequence-based phylogenies. Conclusions We have

  8. Investigation of the contact angles between various molten metals and substrates of niobium and zirconium. Final report. [Sessile drop technique

    Energy Technology Data Exchange (ETDEWEB)

    Munir, Z.A.

    1977-08-01

    The sessile drop technique was utilized for the determination of the contact angles between droplets of liquid tin, indium, and gallium; and substrates of niobium and zirconium. Contact angles, theta, were measured for various substrate surface roughness and over the temperature range 30 to 650/sup 0/C. Values of theta for all of these systems were found to be greater than 90/sup 0/ i.e., constituting a case of nonwetting between the liquid metals and the substrates. Three characteristic regions of the temperature dependence of contact angles were observed. A steady-state region in which the contact angle is relatively independent of temperature was preceded and followed by regions in which theta decreased rapidly with increasing temperature. For the steady-state or second region, contact angles were found to be independent of time whereas in the third region contact angles showed a decreasing trend with time at constant temperature. In accordance with theoretical predictions for theta greater than 90/sup 0/, increasing roughness of the substrate caused a corresponding increase in theta. Electron microprobe analyses showed that only the Ga--Zr system exhibited evidence of diffusion at the interface. Photographs of the sessile drop of this system over a period of time indicated that the drop had spread over a greater area thus supporting the possibility of a surface diffusion mass-transport process.

  9. Sessile animals` distribution and their water quality purification function in Tokyo inner bay; Tokyoto naiwan ni okeru fuchaku dobutsu no bunpu to suishitsu joka kino

    Energy Technology Data Exchange (ETDEWEB)

    Kimura, K.; Tsuchiya, T. [Tokyo Metropolitan Research Inst. for Environmental Protection, Tokyo (Japan); Inamori, Y. [National Inst. for Environmental Studies, Tsukuba (Japan); Okutomi, S. [Saitama University, Saitama (Japan). Faculty of Engineering; Nishimura, O.; Sudo, R. [Tohoku University, Sendai (Japan)

    1998-01-10

    With sea banks in the Tokyo Inner Bay as the object, discussions were given on identification of actual living conditions for sessile animals and purification function of their dominant species. In the investigation, submerged visual observations and identification on existing quantities were performed in July, September and November, 1995 and February 1996. The following matters were made clear as a result of the investigation: the number of species ranges from 43 to 46 and is stabilized throughout a year; a phenomenon is repeated that the number of individuals decreases in summer and winter, and increases in spring and fall as breeding seasons as a result of the addition of larva; the existing quantity is accounted for 90% or more by four dominant species of M. e. galloprovincialis, L. f. kikuchii, C. gigas and Balanus spp in that order; sessile animals weighing 9,110 tons are living annually in average in the sea banks extending over a distance of 192 km; amount of COD purification based on the annual average deposition quantity is calculated 19 tons as a daily average, which corresponds to 23% of the total COD quantity flowing in from the Tokyo urban area; and on the other hand, COD, N and P produced by sessile animals become new loads to environment over the life of these sessile animals. 26 refs., 6 figs., 2 tabs.

  10. The evaporation and wetting dynamics of sessile water droplets on submicron-scale patterned silicon hydrophobic surfaces

    International Nuclear Information System (INIS)

    The evaporation characteristics of 1 µl sessile water droplets on hydrophobic surfaces are experimentally examined. The proposed hydrophobic surfaces are composed of submicron diameter and 4.2 µm height silicon post arrays. A digital image analysis algorithm was developed to obtain time-dependent contact angles, contact diameters, and center heights for both non-patterned polydimethylsiloxane (PDMS) surfaces and patterned post array surfaces, which have the same hydrophobic contact angles. While the contact angles exhibit three distinct stages during evaporation in the non-patterned surface case, those in the patterned silicon post array surface case decrease linearly. In the case of post array hydrophobic surfaces, the initial contact diameter remains unchanged until the portion of the droplet above the posts completely dries out. The edge shrinking velocity of the droplet shows nonlinear characteristics, and the velocity magnitude increases rapidly near the last stage of evaporation.

  11. Concepts and tools for exploiting sessile bio-filters as early warning elements: introductory applications for marine ecosystem preservation

    Directory of Open Access Journals (Sweden)

    M Scalici

    2015-11-01

    Full Text Available Current evidence suggests that integrating diverse warning systems at different biological levels may not only increase the probability of detecting threats but also mitigate their impact. Here, we propose the use of both molecular and morphological descriptors at different biological levels in sessile bivalves (a suitable biological model in monitoring programs to collect information on the ecosystem health of coastal marine habitats. In this context, studies may be implemented on biomarkers to exploit some population features, with the aim to propose an actual monitoring program that predictively would provide possible scenarios on the species fitness and ecosystem changes. Thus, the use of quality biotic elements may provide an objective environmental monitoring method and facilitate the development of sanitary, economic, and social strategies related to sustainable exploitation.

  12. Effects of Substrate Heating and Wettability on Evaporation Dynamics and Deposition Patterns for a Sessile Water Droplet Containing Colloidal Particles

    CERN Document Server

    Patil, Nagesh D; Bhardwaj, Rajneesh; Sharma, Atul

    2016-01-01

    Effects of substrate temperature, substrate wettability and particles concentration are experimentally investigated for evaporation of a sessile water droplet containing colloidal particles. Time-varying droplet shapes and temperature of the liquid-gas interface are measured using high-speed visualization and infrared thermography, respectively. The motion of the particles inside the evaporating droplet is qualitatively visualized by an optical microscope and profile of final particle deposit is measured by an optical profilometer. On a non-heated hydrophilic substrate, a ring-like deposit forms after the evaporation, as reported extensively in the literature; while on a heated hydrophilic substrate, a thinner ring with an inner deposit is reported in the present work. The latter is attributed to Marangoni convection and recorded motion of the particles as well as measured temperature gradient across the liquid-gas interface confirms this hypothesis. The thinning of the ring scales with the substrate temperat...

  13. Soil pro pert ies in sessile oak fore sts (Quercetum montanum typicum Čer. et Jov. 1953 in the are a of Fruška Gora

    Directory of Open Access Journals (Sweden)

    Knežević Milan

    2011-01-01

    Full Text Available The soils formed on sandstones in sessile oak forests (Quercetum montanum typicum Čer. et Jov. 1953 were researched in the area of Fruška Gora. On permanent sample plots established in management units “Čortanovačka Forest-Hopovo-Velika Remeta“ and “Beočin-Manastir-Katanske Livade-Osovlje“, in the are of NP “Fruška Gora“, aiming at the monitoring of the effect of light regime on the development of sessile oak progeny in the given environmental conditions, based on the morphogenetic characteristics of the soil and analytic values of the soil properties, and based on the soil classification by Škorić et al. (1985, the following two soil types were defined: acid brown soil (dystric cambisol, and illimerised soil (luvisol. Acid brown soil belongs to the form of medium deep soils, and illimerised soil is classified as deep soil.

  14. Patterns of mast fruiting of common beech, sessile and common oak, Norway spruce and Scots pine in Central and Northern Europe

    DEFF Research Database (Denmark)

    Nussbaumer, Anita; Waldner, Peter; Etzold, Sophia;

    2016-01-01

    Occurrence of mast years, i.e. the synchronous production of vast amounts of fruits or seeds, has an important impact on forest ecosystems, their functioning and their services. We investigated the mast patterns of the forest tree species common beech, common and sessile oak, Norway spruce and Sc...... hypotheses, and beech and spruce supported the economy of scale, predator satiation and resource allocation hypotheses....

  15. THE EFFECT OF THE HEAT TREATMENT OF SESSILE OAK WOOD (Quercus petrea L.) FROM YOUNG TREES ON THE PROPERTIES OF PANELS WITH TRANSVERSAL GRAIN

    OpenAIRE

    Noemi MARTON; Mihaela POROJAN; Alin OLĂRESCU; Mihaela CÂMPEAN; Lidia GURĂU

    2012-01-01

    Sessile oak from young trees represents asecondary resource with potential for superiorapplications in furniture panels providing theirdimensional stability to variations of relative airhumidity is reduced. A possibility to improve thisproperty was examined in this paper, by thermaltreatment of the raw material before manufacturingdecorative furniture panels with transversal grain.Panels with crosscut grain were manufactured fromboth heat treated and untreated wood and theirproperties were co...

  16. The use of coal fly ash in concrete for marine artificial reefs in the southeastern Mediterranean: compressive strength, sessile biota, and chemical composition

    Energy Technology Data Exchange (ETDEWEB)

    Kress, N.; Tom, M.; Spanier, E. [National Institute of Oceanography, Haifa (Israel)

    2002-07-01

    To examine the possible use of coal fly ash (CFA) in concrete for artificial reefs, blocks containing 0%, 40%, 60% and 80% CFA as a substitute for sand were deployed in the Mediterranean at 18.5-m depth off the coast of Israel during a period of 33 months. Changes in compressive strength, composition, and coverage of sessile biota species, as well as in trace element concentration of the block surface and in sessile biota from four taxonomic groups, were determined as a function of time at sea and block type. Compressive strength clearly increased with time in all types to values well above the minimal strength considered necessary for stability of the blocks at sea. Moreover, the 40% and 60% CFA blocks were 1.5 times stronger than the 0% and 80% ones. Main sessile taxa recorded were filamentous green algae, bryozoa, barnacles, serpulid polychaeta, hydrozoa, and bivalves. Number of species settled and biotic coverage varied among block side and seasonally, but did not differ significantly between block types. The initial heavy metal composition (Hg, Cd, Pb, Cu, Zn, Cr, Mn, Fe, Al) of the block material was directly proportional to the CFA percentage. At the end of the study, Pb had decreased in all types, Cd in the 60% CFA block, and Fe and Al in the 40% and 60% blocks, while Mn had increased in the blocks with 0% and 80% CFA. After 21 months at sea, the only detectable change was a decrease in Pb concentration in all types, indicating that changes may be due to long-term processes. Trace metal levels (Hg, Cd, Zn, Mn, Cu, Fe, and Al) were measured in the sessile biota (hydrozoa, polychaeta, and bivalvia). In most cases, no dependence was found between metal levels and time at sea or CFA content of the blocks. In the hydroid, metal concentration even decreased over time.

  17. Sessile Organisms on PVC Panels in the Waters around a Coral Reef of Ishigaki Island, Yaeyama Islands, Japan, Immediately after the Catastrophic Coral Bleaching in 1998

    OpenAIRE

    Nandakumar, Kanavillil; Takada, Yoshitake; Shibuno, Takuro

    1999-01-01

    Sessile organisms on PVC panels suspended inside and outside coral reef at Ishigaki Island, Yaeyama Islands, Japan, was monitored for 20 days just after the wide-spread incident of coral bleaching in September, 1998. The settlement of a total of 16 species of algae and invertebrates was recorded. Generally, Enteromorpha sp. (Chlorophyceae) dominated the panels. The percentage area cover, number of species, biomass and algal growth were significantly greater in waters outside the reef.

  18. Political systems affect mobile and sessile species diversity--a legacy from the post-WWII period.

    Science.gov (United States)

    Cousins, Sara A O; Kaligarič, Mitja; Bakan, Branko; Lindborg, Regina

    2014-01-01

    Political ideologies, policies and economy affect land use which in turn may affect biodiversity patterns and future conservation targets. However, few studies have investigated biodiversity in landscapes with similar physical properties but governed by different political systems. Here we investigate land use and biodiversity patterns, and number and composition of birds and plants, in the borderland of Austria, Slovenia and Hungary. It is a physically uniform landscape but managed differently during the last 70 years as a consequence of the political "map" of Europe after World War I and II. We used a historical map from 1910 and satellite data to delineate land use within three 10-kilometre transects starting from the point where the three countries meet. There was a clear difference between countries detectable in current biodiversity patterns, which relates to land use history. Mobile species richness was associated with current land use whereas diversity of sessile species was more associated with past land use. Heterogeneous landscapes were positively and forest cover was negatively correlated to bird species richness. Our results provide insights into why landscape history is important to understand present and future biodiversity patterns, which is crucial for designing policies and conservation strategies across the world. PMID:25084154

  19. Morphological transitions and buckling characteristics in a nanoparticle-laden sessile droplet resting on a heated hydrophobic substrate

    Science.gov (United States)

    Bansal, Lalit; Miglani, Ankur; Basu, Saptarshi

    2016-04-01

    In this work, we have established the evaporation-liquid flow coupling mechanism by which sessile nanofluid droplets on a hydrophobic substrate evaporate and agglomerate to form unique morphological features under controlled external heating. It is well understood that evaporation coupled with internal liquid flow controls particle transport in a spatiotemporal sense. Flow characteristics inside the heated droplet are investigated and found to be driven by the buoyancy effects. Velocity magnitudes are observed to increase by an order at higher temperatures with similar looking flow profiles. The recirculating flow induced particle transport coupled with collision of particles and shear interaction between them leads to the formation of dome shaped viscoelastic shells of different dimensions depending on the surface temperature. These shells undergo sol-gel transition and subsequently undergo buckling instability leading to the formation of daughter cavities. With an increase in the surface temperature, droplets exhibit buckling from multiple sites over a larger sector in the top half of the droplet. Irrespective of the initial nanoparticle concentration and substrate temperature, growth of a daughter cavity (subsequent to buckling) inside the droplet is found to be controlled by the solvent evaporation rate from the droplet periphery and is shown to exhibit a universal trend.

  20. Contribution of previous year's leaf N and soil N uptake to current year's leaf growth in sessile oak

    Science.gov (United States)

    Bazot, Stephane; Fresneau, Chantal; Damesin, Claire; Barthes, Laure

    2016-06-01

    The origin of N which contributes to the synthesis of N reserves of in situ forest trees in autumn and to the growth of new organs the following spring is currently poorly documented. To characterize the metabolism of various possible N sources (plant N and soil N), six distinct 20-year-old sessile oaks were 15N labelled by spraying 15NH415NO3: (i) on leaves in May, to label the N pool remobilized in the autumn for synthesis of reserves, (ii) on soil in the autumn, to label the N pool taken up from soil and (iii) on soil at the beginning of the following spring, to label the N pool taken up from soil in the spring. The partitioning of 15N in leaves, twigs, phloem, xylem, fine roots, rhizospheric soil and microbial biomass was followed during two growing seasons. Results showed a significant incorporation of 15N into the soil-tree system; more than 30 % of the administered 15N was recovered. Analysis of the partitioning clearly revealed that in autumn, roots' N reserves were formed from foliage 15N (73 %) and to a lesser extent from soil 15N (27 %). The following spring, 15N used for the synthesis of new leaves came first from 15N stored during the previous autumn, mainly from 15N reserves formed from foliage (95 %). Thereafter, when leaves were fully expanded, 15N uptake from the soil during the previous autumn and before budburst contributed to the formation of new leaves (60 %).

  1. Promoter complexity and tissue-specific expression of stress response components in Mytilus galloprovincialis, a sessile marine invertebrate species.

    Directory of Open Access Journals (Sweden)

    Chrysa Pantzartzi

    Full Text Available The mechanisms of stress tolerance in sessile animals, such as molluscs, can offer fundamental insights into the adaptation of organisms for a wide range of environmental challenges. One of the best studied processes at the molecular level relevant to stress tolerance is the heat shock response in the genus Mytilus. We focus on the upstream region of Mytilus galloprovincialis Hsp90 genes and their structural and functional associations, using comparative genomics and network inference. Sequence comparison of this region provides novel evidence that the transcription of Hsp90 is regulated via a dense region of transcription factor binding sites, also containing a region with similarity to the Gamera family of LINE-like repetitive sequences and a genus-specific element of unknown function. Furthermore, we infer a set of gene networks from tissue-specific expression data, and specifically extract an Hsp class-associated network, with 174 genes and 2,226 associations, exhibiting a complex pattern of expression across multiple tissue types. Our results (i suggest that the heat shock response in the genus Mytilus is regulated by an unexpectedly complex upstream region, and (ii provide new directions for the use of the heat shock process as a biosensor system for environmental monitoring.

  2. Growth of MRSA and Pseudomonas aeruginosa in a fine-celled foam model containing sessile commensal skin bacteria.

    Science.gov (United States)

    Oates, Angela; McBain, Andrew J

    2016-01-01

    Sessile cultures of the skin bacteria Staphylococcus saprophyticus and Corynebacterium xerosis were grown using novel fine-celled foam substrata to test the outcome of challenge by methicillin-resistant Staphylococcus aureus or Pseudomonas aeruginosa under three growth medium regimens (simulated sweat, simulated serum or simulated sweat substituted with simulated serum during the microbial challenge). S. saprophyticus and C. xerosis significantly limited MRSA and P. aeruginosa immigration respectively, under the simulated sweat and serum medium regimes. Under the substitution medium regime however, MRSA and P. aeruginosa integrated into pre-established biofilms to a significantly greater extent, attaining cell densities similar to the axenic controls. The outcome of challenge was influenced by the medium composition and test organism but could not be predicted based on planktonic competition assays or growth dynamics. Interactions between skin and wound isolates could be modelled using the fine-celled foam-based system. This model could be used to further investigate interactions and also in preclinical studies of antimicrobial wound care regimens. PMID:26727101

  3. The Burkholderia cenocepacia OmpA-like protein BCAL2958: identification, characterization, and detection of anti-BCAL2958 antibodies in serum from B. cepacia complex-infected Cystic Fibrosis patients.

    Science.gov (United States)

    Sousa, Sílvia A; Morad, Mostafa; Feliciano, Joana R; Pita, Tiago; Nady, Soad; El-Hennamy, Rehab E; Abdel-Rahman, Mona; Cavaco, José; Pereira, Luísa; Barreto, Celeste; Leitão, Jorge H

    2016-12-01

    Respiratory infections by bacteria of the Burkholderia cepacia complex (Bcc) remain an important cause of morbidity and mortality among cystic fibrosis patients, highlighting the need for novel therapeutic strategies. In the present work we have studied the B. cenocepacia protein BCAL2958, a member of the OmpA-like family of proteins, demonstrated as highly immunogenic in other pathogens and capable of eliciting strong host immune responses. The encoding gene was cloned and the protein, produced as a 6× His-tagged derivative, was used to produce polyclonal antibodies. Bioinformatics analyses led to the identification of sequences encoding proteins with a similarity higher than 96 % to BCAL2958 in all the publicly available Bcc genomes. Furthermore, using the antibody it was experimentally demonstrated that this protein is produced by all the 12 analyzed strains from 7 Bcc species. In addition, results are also presented showing the presence of anti-BCAL2958 antibodies in sera from cystic fibrosis patients with a clinical record of respiratory infection by Bcc, and the ability of the purified protein to in vitro stimulate neutrophils. The widespread production of the protein by Bcc members, together with its ability to stimulate the immune system and the detection of circulating antibodies in patients with a documented record of Bcc infection strongly suggest that the protein is a potential candidate for usage in preventive therapies of infections by Bcc. PMID:27325348

  4. Stick-Jump (SJ) Evaporation of Strongly Pinned Nanoliter Volume Sessile Water Droplets on Quick Drying, Micropatterned Surfaces.

    Science.gov (United States)

    Debuisson, Damien; Merlen, Alain; Senez, Vincent; Arscott, Steve

    2016-03-22

    We present an experimental study of stick-jump (SJ) evaporation of strongly pinned nanoliter volume sessile water droplets drying on micropatterned surfaces. The evaporation is studied on surfaces composed of photolithographically micropatterned negative photoresist (SU-8). The micropatterning of the SU-8 enables circular, smooth, trough-like features to be formed which causes a very strong pinning of the three phase (liquid-vapor-solid) contact line of an evaporating droplet. This is ideal for studying SJ evaporation as it contains sequential constant contact radius (CCR) evaporation phases during droplet evaporation. The evaporation was studied in nonconfined conditions, and forced convection was not used. Micropatterned concentric circles were defined having an initial radius of 1000 μm decreasing by a spacing ranging from 500 to 50 μm. The droplet evaporates, successively pinning and depinning from circle to circle. For each pinning radius, the droplet contact angle and volume are observed to decrease quasi-linearly with time. The experimental average evaporation rates were found to decrease with decreasing pining radii. In contrast, the experimental average evaporation flux is found to increase with decreasing droplet radii. The data also demonstrate the influence of the initial contact angle on evaporation rate and flux. The data indicate that the total evaporation time of a droplet depends on the specific micropattern spacing and that the total evaporation time on micropatterned surfaces is always less than on flat, homogeneous surfaces. Although the surface patterning is observed to have little effect on the average droplet flux-indicating that the underlying evaporation physics is not significantly changed by the patterning-the total evaporation time is considerably modified by patterning, up to a factor or almost 2 compared to evaporation on a flat, homogeneous surface. The closely spaced concentric circle pinning maintains a large droplet radius and

  5. Impacts of residual insecticide barriers on perimeter-invading ants, with particular reference to the odorous house ant, Tapinoma sessile.

    Science.gov (United States)

    Scharf, Michael E; Ratliff, Catina R; Bennett, Gary W

    2004-04-01

    Three liquid insecticide formulations were evaluated as barrier treatments against perimeter-invading ants at a multifamily housing complex in West Lafayette, IN. Several ant species were present at the study site, including (in order of abundance) pavement ant, Tetramorium caespitum (L.); honey ant, Prenolepis imparis (Say); odorous house ant, Tapinoma sessile (Say); thief ant, Solenopsis molesta (Say); acrobat ant, Crematogaster ashmeadi (Mayr); crazy ant, Paratrechina longicornis (Latrielle), field ants, Formica spp.; and carpenter ant Camponotus pennsylvanicus (DeGeer). Studies began in May 2001 and concluded 8 wk later in July. Individual replicate treatments were placed 0.61 in (2 feet) up and 0.92 m (3 feet) out from the ends of 46.1 by 10.1-m (151 by 33-foot) apartment buildings. Ant sampling was performed with 10 placements of moist cat food for 1 h within treatment zones, followed by capture and removal of recruited ants for later counting. All treatments led to substantial reductions in ant numbers relative to untreated controls. The most effective treatment was fipronil, where 2% of before-treatment ant numbers were present at 8 wk after treatment. Both imidacloprid and cyfluthrin barrier treatments had efficacy comparative with fipronil, but to 4 and 2 wk, respectively. Odorous house ants were not sampled before treatment. Comparisons of ant species composition between treatments and controls revealed an increase in odorous house ant frequencies at 1-8 wk after treatment in treated locations only. These results demonstrate efficacy for both nonrepellent and repellent liquid insecticides as perimeter treatments for pest ants. In addition, our findings with odorous house ant highlight an apparent invasive-like characteristic of this species that may contribute to its dramatic increase in structural infestation rates in many areas of the United States. PMID:15154488

  6. Spatial variation in recruitment of native and invasive sessile species onto oyster reefs in a temperate soft-bottom lagoon

    Science.gov (United States)

    Thomsen, M. S.; Silliman, B. R.; McGlathery, K. J.

    2007-03-01

    Although spatial variability in recruitment is a strong force structuring many marine communities, relatively few data exist on recruitment variability in sessile oyster reef communities. In a soft-bottom lagoon in Virginia, we tested if recruitment differed among three reefs situated across a mainland-lagoon-barrier-island transect and among elevations (>90-80, >80-70, >70-55 and >55-20 cm below MSL) on the lagoon reef. The most abundant taxa (the invasive algae Gracilaria vermiculophylla and Codium fragile and the indigenous oyster Crassostrea virginica and algae Ulva curvata) had highest recruitment at the lagoon reef, where propagule supply was likely highest. The mainland reef had lowest algal richness (1.4-3.1 panel -1) and abundances (animals. Overall, animals and algae were equally dominant at the mainland reef, whereas algae dominated at lagoon and island reefs. High water turbidity and suspended solids are typical algal stressors at mainland reefs, and these may account for the low algal abundance in that region. For many species (at least 9 out of 14) differences in recruitment success were observed over elevation differences as small as 10-30 cm, e.g. G. vermiculophylla and C. fragile mainly recruited up to >70-55 and >80-70 cm respectively (probably limited upward by desiccation), U. curvata down to >70-55 cm (probably limited downward by grazing or competition), whereas C. virginica recruited at all elevations. Animal richness was highest at the two lowest elevations (2.0-2.5 vs. 1.1-1.8 panel -1), but there was no effect of elevation on algae (3-6 panel -1) because of species substitutions between elevation levels. Thus, as in rocky intertidal systems, spatial variability in recruitment is important for community structure on oyster reefs, and if biodiversity is considered an important reef conservation goal, managers should focus conservation and restoration on locations and elevations that support successful recruitment and survival of many

  7. Carbon pools and temporal dynamics along a rotation period in sessile oak dominated high forest and coppice with standards stands

    Science.gov (United States)

    Bruckman, V. J.; Yan, S.; Hochbichler, E.; Glatzel, G.

    2012-04-01

    Carbon pools in two Quercus petraea (sessile oak) dominated chronosequences under different forest management (high forest and coppice with standards) were investigated. The objective was to study temporal carbon dynamics, in particular carbon sequestration in the soil and woody biomass production, in common forest management systems in eastern Austria along with stand development. The chronosequence approach was used to substitute time-for-space to enable coverage of a full rotation period in each system. Carbon content was determined in the following compartments: aboveground biomass, litter, soil to a depth of 50 cm, living root biomass and decomposing residues in the mineral soil horizons. Biomass carbon pools, except fine roots and residues, were estimated using species-specific allometric functions. Total carbon pools were on average 143 Mg ha-1 in the high forest stand (HF) and 213 Mg ha-1 in the coppice with standards stand (CS). The mean share of the total organic carbon pool (TOC) which is soil organic carbon (SOC) differs only marginally between HF (43.4%) and CS (42.1%), indicating the dominance of site factors, particularly climate, in controlling this ratio. While there was no significant change in O-layer and SOC stores over stand development, we found clear relationships between living biomass (aboveground and belowground) pools and C:N ratio in topsoil horizons with stand age. SOC pools seem to be very stable and an impact of silvicultural interventions was not detected with the applied method. Rapid decomposition and mineralization of litter, indicated by low O-horizon pools with wide C:N ratios of residual woody debris at the end of the vegetation period, suggests high rates of turnover in this fraction. CS, in contrast to HF benefits from rapid resprouting after coppicing and hence seems less vulnerable to conditions of low rainfall and drying topsoil. Keywords: carbon dynamics; soil carbon; chronosequence; Quercus petraea; coppice; high forest

  8. Impacts of residual insecticide barriers on perimeter-invading ants, with particular reference to the odorous house ant, Tapinoma sessile.

    Science.gov (United States)

    Scharf, Michael E; Ratliff, Catina R; Bennett, Gary W

    2004-04-01

    Three liquid insecticide formulations were evaluated as barrier treatments against perimeter-invading ants at a multifamily housing complex in West Lafayette, IN. Several ant species were present at the study site, including (in order of abundance) pavement ant, Tetramorium caespitum (L.); honey ant, Prenolepis imparis (Say); odorous house ant, Tapinoma sessile (Say); thief ant, Solenopsis molesta (Say); acrobat ant, Crematogaster ashmeadi (Mayr); crazy ant, Paratrechina longicornis (Latrielle), field ants, Formica spp.; and carpenter ant Camponotus pennsylvanicus (DeGeer). Studies began in May 2001 and concluded 8 wk later in July. Individual replicate treatments were placed 0.61 in (2 feet) up and 0.92 m (3 feet) out from the ends of 46.1 by 10.1-m (151 by 33-foot) apartment buildings. Ant sampling was performed with 10 placements of moist cat food for 1 h within treatment zones, followed by capture and removal of recruited ants for later counting. All treatments led to substantial reductions in ant numbers relative to untreated controls. The most effective treatment was fipronil, where 2% of before-treatment ant numbers were present at 8 wk after treatment. Both imidacloprid and cyfluthrin barrier treatments had efficacy comparative with fipronil, but to 4 and 2 wk, respectively. Odorous house ants were not sampled before treatment. Comparisons of ant species composition between treatments and controls revealed an increase in odorous house ant frequencies at 1-8 wk after treatment in treated locations only. These results demonstrate efficacy for both nonrepellent and repellent liquid insecticides as perimeter treatments for pest ants. In addition, our findings with odorous house ant highlight an apparent invasive-like characteristic of this species that may contribute to its dramatic increase in structural infestation rates in many areas of the United States.

  9. Non-coalescence of sessile drops from different but miscible liquids: Hydrodynamic analysis of the twin drop contour as self stabilizing, traveling wave

    CERN Document Server

    Karpitschka, Stefan

    2015-01-01

    Capillarity always favors drop fusion. Nevertheless sessile drops from different but completely miscible liquids often do not fuse instantaneously upon contact. Rather, intermediate non-coalescence is observed. Two separate drop bodies, connected by a thin liquid neck move over the substrate. Supported by new experimental data a thin film hydrodynamic analysis of this state is presented. Presumably advective and diffusive volume fluxes in the neck region establish a localized and temporarily stable surface tension gradient. This induces a local surface (Marangoni) flow that stabilizes a traveling wave i.e., the observed moving twin drop configuration. The theoretical predictions are in excellent agreement with the experimental findings.

  10. Contact angle of copper-bearing shales using the sessile drop and captive bubble methods in the presence of selected frothers

    Directory of Open Access Journals (Sweden)

    Danuta Szyszka

    2016-01-01

    Full Text Available This paper describes the measurement of contact angle of copper-bearing shales. The values of advancing and receding contact angles were determined using the sessile drop and captive bubble methods in the presence of aqueous solutions of acetal and pyridine and distilled water. Both methods demonstrated that the tested substances had only minor impact on the surface hydrophobicity of copper-bearing shales expressed by contact angle. The tests carried out proved that neither acetal nor pyridine may be classified to the collecting reagents because none of them improves hydrophobicity of copper-bearing shales. These reagents are only flotation frothers.

  11. Age-related variation in carbon allocation at tree and stand scales in beech (Fagus sylvatica L.) and sessile oak (Quercus petraea (Matt.) Liebl.) using a chronosequence approach.

    Science.gov (United States)

    Genet, H; Bréda, N; Dufrêne, E

    2010-02-01

    Two types of physiological mechanisms can contribute to growth decline with age: (i) the mechanisms leading to the reduction of carbon assimilation (input) and (ii) those leading to modification of the resource economy. Surprisingly, the processes relating to carbon allocation have been little investigated as compared to research on the processes governing carbon assimilation. The objective of this paper was thus to test the hypothesis that growth decrease related to age is accompanied by changes in carbon allocation to the benefit of storage and reproductive functions in two contrasting broad-leaved species: beech (Fagus sylvatica L.) and sessile oak (Quercus petraea (Matt.) Liebl.). Age-related changes in carbon allocation were studied using a chronosequence approach. Chronosequences, each consisting of several even-aged stands ranging from 14 to 175 years old for beech and from 30 to 134 years old for sessile oak, were divided into five or six age classes. In this study, carbon allocations to growth, storage and reproduction were defined as the relative amount of carbon invested in biomass increment, carbohydrate increment and seed production, respectively. Tree-ring width and allometric relationships were used to assess biomass increment at the tree and stand scales. Below-ground biomass was assessed using a specific allometric relationship between root:shoot ratio and age, established from the literature review. Seasonal variations of carbohydrate concentrations were used to assess carbon allocation to storage. Reproduction effort was quantified for beech stands by collecting seed and cupule production. Age-related flagging of biomass productivity was assessed at the tree and stand scales, and carbohydrate quantities in trees increased with age for both species. Seed and cupule production increased with stand age in beech from 56 gC m(-)(2) year(-1) at 30 years old to 129 gC m(-2) year(-1) at 138 years old. In beech, carbon allocation to storage and

  12. The impact of seed predation and browsing on natural sessile oak regeneration under different light conditions in an over-aged coppice stand

    OpenAIRE

    Kamler J; Dobrovolný L; Drimaj J; Kadavý J; Kneifl M; Adamec Z; Knott R; Martiník A; Plhal R; Zeman J; Hrbek J

    2016-01-01

    Sessile oak (Quercus petraea (Matt.) Liebl.) is one of the most important commercial species cultivated at low altitudes in the Czech Republic, and over-aged coppices are a significant part of oak stands in the region. In order to secure a high-valuable timber production (e.g., through conversion of such stands into coppices-with-standards), knowledge of the potential and limits of generative regeneration is essential. This study was conducted in three oak-dominated over-aged coppice stands i...

  13. Coalescence of sessile drops

    CERN Document Server

    Nikolayev, Vadim; Pomeau, Yves; Andrieu, Claire

    2016-01-01

    We present an experimental and theoretical description of the kinetics of coalescence of two water drops on a plane solid surface. The case of partial wetting is considered. The drops are in an atmosphere of nitrogen saturated with water where they grow by condensation and eventually touch each other and coalesce. A new convex composite drop is rapidly formed that then exponentially and slowly relaxes to an equilibrium hemispherical cap. The characteristic relaxation time is proportional to the drop radius R * at final equilibrium. This relaxation time appears to be nearly 10 7 times larger than the bulk capillary relaxation time t b = R * $\\eta$/$\\sigma$, where $\\sigma$ is the gas--liquid surface tension and $\\eta$ is the liquid shear viscosity. In order to explain this extremely large relaxation time, we consider a model that involves an Arrhenius kinetic factor resulting from a liquid--vapour phase change in the vicinity of the contact line. The model results in a large relaxation time of order t b exp(L/R...

  14. 粗糙固体平面上液滴的接触角滞后的简单流体静力学模型%Simple Hydrostatic Model of Contact Angle Hysteresis of a Sessile Drop on Rough Surface

    Institute of Scientific and Technical Information of China (English)

    毛在砂; 杨超; 陈家镛

    2005-01-01

    The phenomenon of hysteresis of contact angle is an important topic subject to a long time of argument.A simple hydrostatic model of sessile drops under the gravity in combination with an ideal surface roughness model is used to interpret the process of drop volume increase or decrease of a planar sessile drop and to shed light on the contact angle hysteresis and its relationship with the solid surface roughness. With this model, the advancing and receding contact angles are conceptually explained in terms of equilibrium contact angle and surface roughness only,without invoking the thermodynamic multiplicity. The model is found to be qualitatively consistent to experimental observations on contact angle hysteresis and it suggests a possible way to approach the hysteresis of three-dimensional sessile drops.

  15. THE EFFECT OF THE HEAT TREATMENT OF SESSILE OAK WOOD (Quercus petrea L. FROM YOUNG TREES ON THE PROPERTIES OF PANELS WITH TRANSVERSAL GRAIN

    Directory of Open Access Journals (Sweden)

    Noemi MARTON

    2012-06-01

    Full Text Available Sessile oak from young trees represents asecondary resource with potential for superiorapplications in furniture panels providing theirdimensional stability to variations of relative airhumidity is reduced. A possibility to improve thisproperty was examined in this paper, by thermaltreatment of the raw material before manufacturingdecorative furniture panels with transversal grain.Panels with crosscut grain were manufactured fromboth heat treated and untreated wood and theirproperties were compared: dimensional changewith climate, the moisture content at equilibrium, theabsolute density, colour and their MOE and MOR.The results have shown that the thermaltreatment at 130ºC for 2h of sessile oak from youngtrees has improved the dimensional stability and theequilibrium moisture content of the panels and didnot impair their mechanical strength. The colour gotslightly darker and density had an almost negligibledecrease by the heat treatment. Attractive bydesign, because of their grain orientation, but in thisway subjected to axial stresses perpendicular to thegrain, the panels could be used in furnitureapplications where the bending stresses are notcritical.

  16. Genomic sequence and activity of KS10, a transposable phage of the Burkholderia cepacia complex

    Directory of Open Access Journals (Sweden)

    Shrivastava Savita

    2008-12-01

    Full Text Available Abstract Background The Burkholderia cepacia complex (BCC is a versatile group of Gram negative organisms that can be found throughout the environment in sources such as soil, water, and plants. While BCC bacteria can be involved in beneficial interactions with plants, they are also considered opportunistic pathogens, specifically in patients with cystic fibrosis and chronic granulomatous disease. These organisms also exhibit resistance to many antibiotics, making conventional treatment often unsuccessful. KS10 was isolated as a prophage of B. cenocepacia K56-2, a clinically relevant strain of the BCC. Our objective was to sequence the genome of this phage and also determine if this prophage encoded any virulence determinants. Results KS10 is a 37,635 base pairs (bp transposable phage of the opportunistic pathogen Burkholderia cenocepacia. Genome sequence analysis and annotation of this phage reveals that KS10 shows the closest sequence homology to Mu and BcepMu. KS10 was found to be a prophage in three different strains of B. cenocepacia, including strains K56-2, J2315, and C5424, and seven tested clinical isolates of B. cenocepacia, but no other BCC species. A survey of 23 strains and 20 clinical isolates of the BCC revealed that KS10 is able to form plaques on lawns of B. ambifaria LMG 19467, B. cenocepacia PC184, and B. stabilis LMG 18870. Conclusion KS10 is a novel phage with a genomic organization that differs from most phages in that its capsid genes are not aligned into one module but rather separated by approximately 11 kb, giving evidence of one or more prior genetic rearrangements. There were no potential virulence factors identified in KS10, though many hypothetical proteins were identified with no known function.

  17. Biochemical and functional studies on the Burkholderia cepacia complex bceN gene, encoding a GDP-D-mannose 4,6-dehydratase.

    Directory of Open Access Journals (Sweden)

    Sílvia A Sousa

    Full Text Available This work reports the biochemical and functional analysis of the Burkholderia cenocepacia J2315 bceN gene, encoding a protein with GDP-D-mannose 4,6-dehydratase enzyme activity (E.C.4.2.1.47. Data presented indicate that the protein is active when in the tetrameric form, catalyzing the conversion of GDP-D-mannose into GDP-4-keto-6-deoxy-D-mannose. This sugar nucleotide is the intermediary necessary for the biosynthesis of GDP-D-rhamnose, one of the sugar residues of cepacian, the major exopolysaccharide produced by environmental and human, animal and plant pathogenic isolates of the Burkholderia cepacia complex species. Vmax and Km values of 1.5±0.2 µmol.min(-1.mg(-1 and 1024±123 µM, respectively, were obtained from the kinetic characterization of the B. cenocepacia J2315 BceN protein by NMR spectroscopy, at 25°C and in the presence of 1 mol MgCl2 per mol of protein. The enzyme activity was strongly inhibited by the substrate, with an estimated Ki of 2913±350 µM. The lack of a functional bceN gene in a mutant derived from B. cepacia IST408 slightly reduced cepacian production. However, in the B. multivorans ATCC17616 with bceN as the single gene in its genome with predicted GMD activity, a bceN mutant did not produce cepacian, indicating that this gene product is required for cepacian biosynthesis.

  18. Influence of viscosity on acoustic streaming in sessile droplets: an experimental and a numerical study with a Streaming Source Spatial Filtering (SSSF) method

    CERN Document Server

    Riaud, Antoine; Matar, Oliver Bou; Thomas, Jean-Louis; Brunet, Philippe

    2016-01-01

    When an acoustic wave travels in a lossy medium such as a liquid, it progressively transfers its pseudo-momentum to the fluid, which results in a steady acoustic streaming. Remarkably, the phenomenon involves a balance between sound attenuation and shear, such that viscosity vanishes in the final expression of the velocity field. For this reason, the effect of viscosity has long been ignored in acoustic streaming experiments. Here, we show experimentally that the viscosity plays a major role in cavities such as the streaming induced by surface acoustic waves in sessile droplets. We develop a numerical model based on the spatial filtering of the streaming source term to compute the induced flow motion with dramatically reduced computational requirements. We evidence that acoustic fields in droplets are a superposition of a chaotic field and a few powerful caustics. It appears that the caustics drive the flow, which allows a qualitative prediction of the flow structure. Finally, we reduce the problem to two dim...

  19. The effect of bacteriocin-producing Lactobacillus plantarum strains on the intracellular pH of sessile and planktonic Listeria monocytongenes single cells

    DEFF Research Database (Denmark)

    Nielsen, Dennis Sandris; Cho, Gyu-Sung; Hanak, Alexander;

    2010-01-01

    A wide range of lactic acid bacteria (LAB) produce bacteriocins mainly active against other closely related LAB, but some bacteriocins are also active against the food-borne pathogen Listeria monocytogenes. With the aim of increasing food safety it has thus been considered to utilise bacteriocins...... and/or bacteriocin-producing LAB as “natural” food preservatives in foods such as cheese, meat and ready-to-eat products. Some strains of Lactobacillus plantarum produce bacteriocins termed plantaricins. Using a single-cell based approach, the effect on the intracellular pH as a measure...... of the physiological state of sessile and planktonic L. monocytogenes (strains EGDe and N53-1) during co-culturing with plantaricin-producing L. plantarum (strains BFE 5092 and PCS 20) was investigated using fluorescence ratio imaging microscopy (FRIM). Mono-cultures of L. monocytogenes were used as control...... affected pHi of L. monocytogenes N53-1 with only 20% of the cells being able to maintain pHi in the physiological optimal range with pH > 7 and 52% of the cells with pHi ~ pHex, showing that the cells had no proton gradient towards the environment. The effect on L. monocytogenes EGDe was less pronounced...

  20. Endoscopic Observation of the Growth Process of a Right-Side Sessile Serrated Adenoma/Polyp with Cytological Dysplasia to an Invasive Submucosal Adenocarcinoma

    Science.gov (United States)

    Yoshida, Kanako; Daa, Tsutomu

    2016-01-01

    A sessile serrated adenoma/polyp (SSA/P) with cytological dysplasia in the right colon, which transformed to an invasive submucosal adenocarcinoma finally, was endoscopically observed in a 76-year-old woman. A whitish soft SSA/P (approximately 25 mm in diameter) was detected in the cecum. Biopsy samples were obtained from the small nodule, and the lesion was eventually diagnosed as an SSA/P with cytological dysplasia, considering endoscopic observations, among which the narrow-band imaging features suggested that the lesion was adenomatous, that is, a round-oval pattern, and hyperplastic, that is, comprising a circular pattern with dots and an invisible capillary vessel. After 11 months, an SSA/P had rapidly developed into a submucosal adenocarcinoma with lymphatic infiltrations, and the most aggressive deep invasion was observed in the central depression. This case suggests that right-side SSA/Ps with cytological dysplasia should be removed immediately, considering the potential for rapid progression to a larger size and eventually to deep and extensive cancer. PMID:27437153

  1. Humus characteristics and seasonal changes of soil arthropod communities in a natural sessile oak (Quercus petraea L.) stand and adjacent Austrian pine (Pinus nigra Arnold) plantation.

    Science.gov (United States)

    Cakir, Meric; Makineci, Ender

    2013-11-01

    In order to assess the effects of conversion of natural stands into plantations, soil invertebrate micro- and macroarthropod communities were evaluated for their abundance and richness in a sessile oak (SO; Quercus petraea L.) stand and adjacent Austrian pine (AP; Pinus nigra Arnold) plantation. Sites were sampled four times a year in 3-month intervals from May 2009 to February 2010. Humus characteristics such as total mass; carbon, lignin, and cellulose contents; and C/N ratio were significantly different between SO and AP. Statistically significant differences were detected on soil pH, carbon and nitrogen contents, and electrical conductivity between the two sites. The number of microarthropods was higher in AP than in the SO site. The annual mean abundance values of microarthropods in a square meter were 67,763 in AP and 50,542 in SO, and the annual mean abundance values of macroarthropods were 921 m(-2) in AP and 427 m(-2) in SO. Among the soil microarthropods, Acari and Collembola were the dominant groups. Shannon's diversity index was more affected by evenness than species number despite the species diversity (H') of soil arthropods being generally higher in the SO stand. The abundance of microarthropods showed clear seasonal trends depending upon the humidity of the soil.

  2. Trimeric autotransporter adhesins in members of the Burkholderia cepacia complex: a multifunctional family of proteins implicated in virulence

    Directory of Open Access Journals (Sweden)

    Arsénio Mendes Fialho

    2011-12-01

    Full Text Available Trimeric autotransporter adhesins (TAAs are multimeric surface proteins, involved in various biological traits of pathogenic Gram-negative bacteria including adherence, biofilm formation, invasion, survival within eukaryotic cells, serum resistance and cytotoxicity. TAAs have a modular architecture composed by a conserved membrane-anchored C-terminal domain and a variable number of stalk and head domains. In this study, a bioinformatic approach has been used to analyze the distribution and architecture of TAAs among Burkholderia cepacia complex (Bcc genomes. Fifteen genomes were probed revealing a total of 74 encoding sequences. Compared with other bacterial species, the Bcc genomes contain a disproportionately large number of TAAs (two genes to up to 8 genes, such as in B.cenocepacia. Phylogenetic analysis showed that the TAAs grouped into at least eight distinct clusters. TAAs with serine-rich repeats are clearly well separated from others, thereby representing a different evolutionary lineage. Comparative gene mapping across Bcc genomes reveals that TAA genes are inserted within conserved synteny blocks. We further focused our analysis on the epidemic strain B. cenocepacia J2315 in which 7 TAAs were annotated. Among these, 3 TAA-encoding genes (BCAM019, BCAM0223 and BCAM0224 are organized into a cluster and are candidates for multifunctional virulence factors. Here we review the current insights into the functional role of BCAM0224 as a model locus.

  3. C-di-GMP Regulates Motile to Sessile Transition by Modulating MshA Pili Biogenesis and Near-Surface Motility Behavior in Vibrio cholerae.

    Science.gov (United States)

    Jones, Christopher J; Utada, Andrew; Davis, Kimberly R; Thongsomboon, Wiriya; Zamorano Sanchez, David; Banakar, Vinita; Cegelski, Lynette; Wong, Gerard C L; Yildiz, Fitnat H

    2015-10-01

    In many bacteria, including Vibrio cholerae, cyclic dimeric guanosine monophosphate (c-di-GMP) controls the motile to biofilm life style switch. Yet, little is known about how this occurs. In this study, we report that changes in c-di-GMP concentration impact the biosynthesis of the MshA pili, resulting in altered motility and biofilm phenotypes in V. cholerae. Previously, we reported that cdgJ encodes a c-di-GMP phosphodiesterase and a ΔcdgJ mutant has reduced motility and enhanced biofilm formation. Here we show that loss of the genes required for the mannose-sensitive hemagglutinin (MshA) pilus biogenesis restores motility in the ΔcdgJ mutant. Mutations of the predicted ATPase proteins mshE or pilT, responsible for polymerizing and depolymerizing MshA pili, impair near surface motility behavior and initial surface attachment dynamics. A ΔcdgJ mutant has enhanced surface attachment, while the ΔcdgJmshA mutant phenocopies the high motility and low attachment phenotypes observed in a ΔmshA strain. Elevated concentrations of c-di-GMP enhance surface MshA pilus production. MshE, but not PilT binds c-di-GMP directly, establishing a mechanism for c-di-GMP signaling input in MshA pilus production. Collectively, our results suggest that the dynamic nature of the MshA pilus established by the assembly and disassembly of pilin subunits is essential for transition from the motile to sessile lifestyle and that c-di-GMP affects MshA pilus assembly and function through direct interactions with the MshE ATPase.

  4. Cyclooxygenase-2 overexpression is common in serrated and non-serrated colorectal adenoma, but uncommon in hyperplastic polyp and sessile serrated polyp/adenoma

    Directory of Open Access Journals (Sweden)

    Kirkner Gregory J

    2008-01-01

    Full Text Available Abstract Background Cyclooxygenase-2 (COX-2, PTGS2 plays an important role in colorectal carcinogenesis. COX-2 overexpression in colorectal cancer is inversely associated with microsatellite instability (MSI and the CpG island methylator phenotype (CIMP. Evidence suggests that MSI/CIMP+ colorectal cancer may arise through the serrated tumorigenic pathway through various forms of serrated neoplasias. Therefore, we hypothesized that COX-2 may play a less important role in the serrated pathway. Methods By immunohistochemistry, we assessed COX-2 expression in 24 hyperplastic polyps, 7 sessile serrated polyp/adenomas (SSA, 5 mixed polyps with SSA and adenoma, 27 traditional serrated adenomas, 515 non-serrated adenomas (tubular adenoma, tubulovillous adenoma and villous adenoma, 33 adenomas with intramucosal carcinomas, 96 adenocarcinomas with serration (corkscrew gland and 111 adenocarcinomas without serration. Results Strong (2+ COX-2 overexpression was more common in non-serrated adenomas (28% = 143/515 than in hyperplastic polyps (4.2% = 1/24, p = 0.008 and serrated polyps (7 SSAs and 5 mixed polyps (0% = 0/12, p = 0.04. Furthermore, any (1+/2+ COX-2 overexpression was more frequent in non-serrated adenomas (60% = 307/515 than in hyperplastic polyps (13% = 3/24, p Conclusion COX-2 overexpression is infrequent in hyperplastic polyp, SSA and mixed polyp with SSA and adenoma, compared to non-serrated and serrated adenoma. COX-2 overexpression becomes more frequent as tumors progress to higher grade neoplasias. Our observations suggest that COX-2 may play a less significant role in the serrated pathway of tumorigenesis; however, COX-2 may still play a role in later stage of the serrated pathway.

  5. Microstreaming from Sessile Semicylindrical Bubbles

    Science.gov (United States)

    Hilgenfeldt, Sascha; Rallabandi, Bhargav; Guo, Lin; Wang, Cheng

    2014-03-01

    Powerful steady streaming flows result from the ultrasonic driving of microbubbles, in particular when these bubbles have semicylindrical cross section and are positioned in contact with a microfluidic channel wall. We have used this streaming in experiment to develop novel methods for trapping and sorting of microparticles by size, as well as for micromixing. Theoretically, we arrive at an analytical description of the streaming flow field through an asymptotic computation that, for the first time, reconciles the boundary layers around the bubble and along the substrate wall, and also takes into account the oscillation modes of the bubble. This approach gives insight into changes in the streaming pattern with bubble size and driving frequency, including a reversal of the flow direction at high frequencies with potentially useful applications. Present address: Mechanical and Aerospace Engineering, Missouri S &T.

  6. Antibacterial activity of a lectin-like Burkholderia cenocepacia protein

    OpenAIRE

    Ghequire, Maarten; De Canck, Evelien; Wattiau, Pierre; Van Winge, Iris; Loris, Remy; Coenye, Tom; De Mot, René

    2013-01-01

    Abstract Bacteriocins of the LlpA family have previously been characterized in the γ-proteobacteria Pseudomonas and Xanthomonas. These proteins are composed of two MMBL (monocot mannose-binding lectin) domains, a module predominantly and abundantly found in lectins from monocot plants. Genes encoding four different types of LlpA-like proteins were identified in genomes from strains belonging to the Burkholderia cepacia complex (Bcc) and the Burkholderia pseudomallei group. A selected recombin...

  7. How Fast Is the Sessile Ciona?

    Directory of Open Access Journals (Sweden)

    Luisa Berná

    2009-01-01

    Full Text Available Genomewide analyses of distances between orthologous gene pairs from the ascidian species Ciona intestinalis and Ciona savignyi were compared with those of vertebrates. Combining this data with a detailed and careful use of vertebrate fossil records, we estimated the time of divergence between the two ascidians nearly 180 My. This estimation was obtained after correcting for the different substitution rates found comparing several groups of chordates; indeed we determine here that on average Ciona species evolve 50% faster than vertebrates.

  8. How Fast Is the Sessile Ciona?

    OpenAIRE

    Giuseppe D'Onofrio; Fernando Alvarez-Valin; Luisa Berná

    2009-01-01

    Genomewide analyses of distances between orthologous gene pairs from the ascidian species Ciona intestinalis and Ciona savignyi were compared with those of vertebrates. Combining this data with a detailed and careful use of vertebrate fossil records, we estimated the time of divergence between the two ascidians nearly 180 My. This estimation was obtained after correcting for the different substitution rates found comparing several groups of chordates; indeed we determine here that on average ...

  9. Architecture of Burkholderia cepacia complex σ70 gene family: evidence of alternative primary and clade-specific factors, and genomic instability

    Directory of Open Access Journals (Sweden)

    Menard Aymeric

    2007-09-01

    Full Text Available Abstract Background The Burkholderia cepacia complex (Bcc groups bacterial species with beneficial properties that can improve crop yields or remediate polluted sites but can also lead to dramatic human clinical outcomes among cystic fibrosis (CF or immuno-compromised individuals. Genome-wide regulatory processes of gene expression could explain parts of this bacterial duality. Transcriptional σ70 factors are components of these processes. They allow the reversible binding of the DNA-dependent RNA polymerase to form the holoenzyme that will lead to mRNA synthesis from a DNA promoter region. Bcc genome-wide analyses were performed to investigate the major evolutionary trends taking place in the σ70 family of these bacteria. Results Twenty σ70 paralogous genes were detected in the Burkholderia cenocepacia strain J2315 (Bcen-J2315 genome, of which 14 were of the ECF (extracytoplasmic function group. Non-ECF paralogs were related to primary (rpoD, alternative primary, stationary phase (rpoS, flagellin biosynthesis (fliA, and heat shock (rpoH factors. The number of σ70 genetic determinants among this genome was of 2,86 per Mb. This number is lower than the one of Pseudomonas aeruginosa, a species found in similar habitats including CF lungs. These two bacterial groups showed strikingly different σ70 family architectures, with only three ECF paralogs in common (fecI-like, pvdS and algU. Bcen-J2315 σ70 paralogs showed clade-specific distributions. Some paralogs appeared limited to the ET12 epidemic clone (ecfA2, particular Bcc species (sigI, the Burkholderia genus (ecfJ, ecfF, and sigJ, certain proteobacterial groups (ecfA1, ecfC, ecfD, ecfE, ecfG, ecfL, ecfM and rpoS, or were broadly distributed in the eubacteria (ecfI, ecfK, ecfH, ecfB, and rpoD-, rpoH-, fliA-like genes. Genomic instability of this gene family was driven by chromosomal inversion (ecfA2, recent duplication events (ecfA and RpoD, localized (ecfG and large scale deletions (sig

  10. Evaporation of Sessile Droplets Laden with Particles and Insoluble Surfactants.

    Science.gov (United States)

    Karapetsas, George; Chandra Sahu, Kirti; Matar, Omar K

    2016-07-12

    We consider the flow dynamics of a thin evaporating droplet in the presence of an insoluble surfactant and noninteracting particles in the bulk. On the basis of lubrication theory, we derive a set of evolution equations for the film height, the interfacial surfactant, and bulk particle concentrations, taking into account the dependence of liquid viscosity on the local particle concentration. An important ingredient of our model is that it takes into account the fact that the surfactant adsorbed at the interface hinders evaporation. We perform a parametric study to investigate how the presence of surfactants affects the evaporation process as well as the flow dynamics with and without the presence of particles in the bulk. Our numerical calculations show that the droplet lifetime is affected significantly by the balance between the ability of the surfactant to enhance spreading, suppressing the effect of thermal Marangoni stresses-induced motion, and to hinder the evaporation flux through the reduction of the effective interfacial area of evaporation, which tend to accelerate and decelerate the evaporation process, respectively. For particle-laden droplets and in the case of dilute solutions, the droplet lifetime is found to be weakly dependent on the initial particle concentration. We also show that the particle deposition patterns are influenced strongly by the direct effect of the surfactant on the evaporative flux; in certain cases, the "coffee-stain" effect is enhanced significantly. A discussion of the delicate interplay between the effects of capillary pressure and solutal and thermal Marangoni stresses, which drive the liquid flow inside of the evaporating droplet giving rise to the observed results, is provided herein.

  11. Quasi-static relaxation of arbitrarily shaped sessile drops

    CERN Document Server

    Iliev, S; Nikolayev, Vadim

    2016-01-01

    We study a spontaneous relaxation dynamics of arbitrarily shaped liquid drops on solid surfaces in the partial wetting regime. It is assumed that the energy dissipated near the contact line is much larger than that in the bulk of the fluid. We have shown rigorously in the case of quasi-static relaxation using the standard mechanical description of dissipative system dynamics that the introduction of a dissipation term proportional to the contact line length leads to the well known local relation between the contact line velocity and the dynamic contact angle at every point of an arbitrary contact line shape. A numerical code is developed for 3D drops to study the dependence of the relaxation dynamics on the initial drop shape. The available asymptotic solutions are tested against the obtained numerical data. We show how the relaxation at a given point of the contact line is influenced by the dynamics of the whole drop which is a manifestation of the non-local

  12. Role of natural convection in the dissolution of sessile droplets

    CERN Document Server

    Dietrich, Erik; Visser, Claas Willem; Hofhuis, Kevin; Kooij, E Stefan; Zandvliet, Harold J W; Lohse, Detlef

    2016-01-01

    The dissolution process of small (initial (equivalent) radius $R_0 Ra_t$, where $Ra_t = 12$ is the transition Ra-number as extracted from the data. For $Ra < Ra_t$ and smaller, convective transport is progressively overtaken by diffusion and the above scaling relations break down.

  13. MANGROVE-EXPORTED NUTRIENT INCORPORATION BY SESSILE CORAL REEF INVERTEBRATES

    Science.gov (United States)

    Coastal mangrove forests were historically considered as a source of organic matter (OM) for adjacent marine systems due to high net primary production; yet recent research suggesting little uptake through the food web because of low nutritional quality, challenges the concept of...

  14. The transition between sessile and motile bacterial lifestyles

    NARCIS (Netherlands)

    Tsompanidou, Eleni

    2012-01-01

    Nader inzicht in effectiviteit Staphylococcus aureus Eleni Tsompanidou verrichtte onderzoek naar de mechanismen die de verspreiding van de Staphylococcus aureus verklaren. Ze ontdekte dat alleen stammen van S. aureus met een actief agr-regulatiesysteem zich goed kunnen verspreiden over oppervlakken.

  15. Evaporation of a sessile droplet: inside the coffee stain.

    Science.gov (United States)

    Berteloot, Guillaume; Hoang, Anna; Daerr, Adrian; Kavehpour, H Pirouz; Lequeux, Francois; Limat, Laurent

    2012-03-15

    We have investigated experimentally, for the first time at microscopic level, the growth of the deposit left around a drop of colloids drying on a solid surface ("coffee stain effect"). Direct observations show that there are several distinct phases of growth, the later ones exhibiting surprising pattern formations with spatial modulation of the deposit. In addition, fluorescence reveals that the initial growth phase is governed by a single length scale, increasing with time as t(23). We show that this exponent is a direct consequence of the divergence of evaporation near contact line evidenced by Deegan et al. We propose a simple ballistic model that allows us to calculate both this exponent and the prefactor, in agreement with yet available more complex descriptions. This model also opens the possibility to include effects neglected up to now. PMID:22284570

  16. Evaporation of a sessile droplet: Inside the coffee stain

    Science.gov (United States)

    Hoang, Anna; Berteloot, Guillaume; Daerr, Adrian; Kavehpour, Pirouz; Lequeux, Francois; Limat, Laurent

    2010-11-01

    The deposition of uniform layers of colloids on a solid surface is a major challenge for several industrial processes such as glass surface treatment and creating optical filters. A possible strategy involves the deposition of the colloids behind a contact line that recedes due to hydrodynamic reasons and evaporation (drying). We have investigated a drop of colloidal suspension evaporating on a flat surface where the contact line remains strongly pinned on the surface. We have observed that the deposit grows from the contact line following a t^23 law and then accelerates with surprising spatial and temporal modulations. The power law can be recovered by a ballistic model, in which the particles are driven to contact line by the evaporation field that diverges near the contact line.

  17. Evaporation of Sessile Droplets Laden with Particles and Insoluble Surfactants.

    Science.gov (United States)

    Karapetsas, George; Chandra Sahu, Kirti; Matar, Omar K

    2016-07-12

    We consider the flow dynamics of a thin evaporating droplet in the presence of an insoluble surfactant and noninteracting particles in the bulk. On the basis of lubrication theory, we derive a set of evolution equations for the film height, the interfacial surfactant, and bulk particle concentrations, taking into account the dependence of liquid viscosity on the local particle concentration. An important ingredient of our model is that it takes into account the fact that the surfactant adsorbed at the interface hinders evaporation. We perform a parametric study to investigate how the presence of surfactants affects the evaporation process as well as the flow dynamics with and without the presence of particles in the bulk. Our numerical calculations show that the droplet lifetime is affected significantly by the balance between the ability of the surfactant to enhance spreading, suppressing the effect of thermal Marangoni stresses-induced motion, and to hinder the evaporation flux through the reduction of the effective interfacial area of evaporation, which tend to accelerate and decelerate the evaporation process, respectively. For particle-laden droplets and in the case of dilute solutions, the droplet lifetime is found to be weakly dependent on the initial particle concentration. We also show that the particle deposition patterns are influenced strongly by the direct effect of the surfactant on the evaporative flux; in certain cases, the "coffee-stain" effect is enhanced significantly. A discussion of the delicate interplay between the effects of capillary pressure and solutal and thermal Marangoni stresses, which drive the liquid flow inside of the evaporating droplet giving rise to the observed results, is provided herein. PMID:27300638

  18. Growth control of sessile microbubbles in PDMS devices.

    Science.gov (United States)

    Volk, Andreas; Rossi, Massimiliano; Kähler, Christian J; Hilgenfeldt, Sascha; Marin, Alvaro

    2015-12-21

    In a microfluidic environment, the presence of bubbles is often detrimental to the functionality of the device, leading to clogging or cavitation, but microbubbles can also be an indispensable asset in other applications such as microstreaming. In either case, it is crucial to understand and control the growth or shrinkage of these bodies of air, in particular in common soft-lithography devices based on polydimethylsiloxane (PDMS), which is highly permeable to gases. In this work, we study the gas transport into and out of a bubble positioned in a microfluidic device, taking into account the direct gas exchange through PDMS as well as the transport of gas through the liquid in the device. Hydrostatic pressure regulation allows for the quantitative control of growth, shrinkage, or the attainment of a stable equilibrium bubble size. We find that the vapor pressure of the liquid plays an important role for the balance of gas transport, accounting for variability in experimental conditions and suggesting additional means of bubble size control in applications.

  19. Growth control of sessile microbubbles in PDMS devices

    CERN Document Server

    Volk, Andreas; Kähler, Christian J; Hilgenfeldt, Sascha; Marin, Alvaro

    2015-01-01

    In a microfluidic environment, the presence of bubbles is often detrimental to the functionality of the device, leading to clogging or cavitation, but microbubbles can also be an indispensable asset in other applications such as microstreaming. In either case, it is crucial to understand and control the growth or shrinkage of these bodies of air, in particular in common soft-lithography devices based on polydimethylsiloxane (PDMS), which is highly permeable to gases. In this work, we study the gas transport into and out of a bubble positioned in a microfluidic device, taking into account the direct gas exchange through PDMS as well as the transport of gas through the liquid in the device. Hydrostatic pressure regulation allows for the quantitative control of growth, shrinkage, or the attainment of a stable equilibrium bubble size. We find that the vapor pressure of the liquid plays an important role for the balance of gas transport, accounting for variability in experimental conditions and suggesting addition...

  20. Use of a Burkholderia cenocepacia ABTS Oxidizer in a Microbial Fuel Cell

    Science.gov (United States)

    Microbial fuel cells (MFCs) often use biological processes to generate electrons from organic material contained in the anode chamber and abiotic processes employing atmospheric oxygen as the oxidant in the cathode chamber. This study investigated the accumulation of an oxidant in bacterial cultures...

  1. A sensor kinase recognizing the cell-cell signal BDSF (cis-2-dodecenoic acid) regulates virulence in Burkholderia cenocepacia

    DEFF Research Database (Denmark)

    McCarthy, Y.; Yang, Liang; Twomey, K.B.;

    2010-01-01

    the input domain of RpfC was active in BDSF signal perception when expressed in X. campestris. Mutation of BCAM0227 gave rise to reduced cytotoxicity to Chinese hamster ovary cells and reduced virulence to Wax moth larvae and in the agar-bead mouse model of pulmonary infection. The findings identify BCAM...

  2. NCBI nr-aa BLAST: CBRC-CREM-01-1310 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-CREM-01-1310 ref|YP_624641.1| acyltransferase 3 [Burkholderia cenocepacia AU 1...054] ref|YP_837010.1| acyltransferase 3 [Burkholderia cenocepacia HI2424] ref|ZP_01565190.1| acyltransferase 3 [Burkholder...ia cenocepacia MC0-3] gb|ABF79668.1| acyltransferase 3 [Burkholderia cenocepacia AU 1054] gb|A...BK10117.1| acyltransferase 3 [Burkholderia cenocepacia HI2424] gb|EAV56867.1| acyltransferase 3 [Burkholderia cenocepacia MC0-3] YP_624641.1 1e-65 56% ...

  3. Speciation, Diversification, and Coexistence of Sessile Species That Compete for Space

    OpenAIRE

    Namiko Mitarai; Els Heinsalu; Kim Sneppen

    2014-01-01

    Speciation, diversification, and competition between species challenge the stability of complex ecosystems. Laboratory experiments often focus on one or two species competing under conditions where they may grow exponentially. Field studies, in contrast, emphasize multi-species communities characterized by many types of ecological interactions. A general problem is to understand conditions that support a dynamically maintained coexistence of many species in an ecosystem over a long time span....

  4. Evaporation of sessile droplets affected by graphite nanoparticles and binary base fluids.

    Science.gov (United States)

    Zhong, Xin; Duan, Fei

    2014-11-26

    The effects of ethanol component and nanoparticle concentration on evaporation dynamics of graphite-water nanofluid droplets have been studied experimentally. The results show that the formed deposition patterns vary greatly with an increase in ethanol concentration from 0 to 50 vol %. Nanoparticles have been observed to be carried to the droplet surface and form a large piece of aggregate. The volume evaporation rate on average increases as the ethanol concentration increases from 0 to 50 vol % in the binary mixture nanofluid droplets. The evaporation rate at the initial stage is more rapid than that at the late stage to dry, revealing a deviation from a linear fitting line, standing for a constant evaporation rate. The deviation is more intense with a higher ethanol concentration. The ethanol-induced smaller liquid-vapor surface tension leads to higher wettability of the nanofluid droplets. The graphite nanoparticles in ethanol-water droplets reinforce the pinning effect in the drying process, and the droplets with more ethanol demonstrate the depinning behavior only at the late stage. The addition of graphite nanoparticles in water enhances a droplet baseline spreading at the beginning of evaporation, a pinning effect during evaporation, and the evaporation rate. However, with a relatively high nanoparticle concentration, the enhancement is attenuated.

  5. Relative humidity influence on the spreading dynamics of sessile drops of blood

    Science.gov (United States)

    Brutin, David; Bouzeid, Wassim

    2014-11-01

    We studied the effect of relative humidity on the initial stages of spreading dynamics for drops of whole human blood. A range of relative humidities from 8% to 90% was studied. Drops of the same volume were gently deposited on ultra-clean microscope glass substrates. We show that the drop spreading is driven by two distinct regimes. The first is characterized by fast dynamics and competition between viscous forces and capillary forces, whereas the second regime is characterized by competition between viscous dissipation and evaporation and exhibits slower dynamics. At early stages of spreading, the power law r(t) ~ tn (n = 0.65) was observed regardless of the humidity. At later stages of spreading, the exponent of the power law r(t) ~ tn (n = 0.19) was found to be higher than that of Tanner's law because of the effect of humidity and Marangoni stresses. Spreading time and spreading dynamics were found to be related to relative humidity. This is explained by the adhesion of red blood cells to the substrate that is similar to the mechanism observed for nanofluid droplets. The mean velocity of the triple line followed the same behavior as Tanner's model, where the final wetting radius and the apparent contact angle are functions of relative humidity.

  6. Prudent sessile feeding by the corallivore snail, Coralliophila violacea on coral energy sinks

    OpenAIRE

    Oren, U.; Brickner, I.; Y. Loya

    1998-01-01

    Convergence of form and function has accompanied the evolution of modular growth in terrestrial plants and colonial marine invertebrates. Part of this convergence is related to the optimal exploitation of resources (space and light) and the ability to translocate energy products from sources to sink sites. Feeding on the energy pathways and energy sinks of terrestrial plants is a well-known phenomenon. Hermatypic corals, the major organisms constructing tropical reef environments, contain pho...

  7. A Mesoscopic Self-assembled Ring of a Femtomole Fluorescein Sessile Droplet on Glass Slide Support

    Institute of Scientific and Technical Information of China (English)

    Cheng Zhi HUANG; Ying LIU; Yuan Fang LI

    2004-01-01

    Since the solvent evaporation of a droplet on a hydrophobically pretreated glass slide, femtomole amount of fluorescent materials is carried by the evaporation and results in outward capillary flow to the perimeter of the droplet spot where the solute deposits, and forms a fluorescent ring like deposit (RLD) with submicrometer-scale structures.

  8. Interspecific competition influences the organization of a diverse sessile insect community

    Science.gov (United States)

    Cornelissen, Tatiana; de Carvalho Guimarães, Carla Daniele; Rodrigues Viana, João Paulo; Silva, Bárbara

    2013-10-01

    Interspecific competition has played a major role in determining the effects of species interactions in terrestrial communities and the perception of its role on shaping population dynamics and community structure has changed throughout the years. In this study, we evaluated the existence of interspecific competition in the herbivore community of the dioecious plant Baccharis pseudomyriocephala (Asteraceae), which holds a diverse community of gall-forming insects. Sixty plants were studied and gall richness and abundance among plants were evaluated. To address whether a plant already occupied by a gall species is preferred or avoided by another gall species, null models were used for all 60 plants combined and for male and female plants separately. Our results have shown that the 11 species of gall-formers found on B. pseudomyriocephala co-occur less than expected by chance alone, indicating that interspecific competition might be an important force structuring the insect community in this tropical host plant, regardless of plant gender.

  9. Larval anatomy of the pterobranch Cephalodiscus gracilis supports secondarily derived sessility concordant with molecular phylogenies

    Science.gov (United States)

    Stach, Thomas

    2013-12-01

    Pterobranchs have been interpreted as "missing links" combining primitive invertebrate features with advanced vertebrate-like characteristics. The first detailed morphological description of an ontogenetic stage of a pterobranch, based on digital 3D-reconstruction at electron microscopic resolution, reveals a triploblastic animal with monociliated epithelia, an extensive coelomic cavity, a through gut with an asymmetrically developed gill slit but no signs of planktonic specializations, such as ciliated bands. Therefore, this crawling larva supports the hypothesis proposed in previous molecular phylogenetic studies that pterobranchs could be derived within enteropneusts rather than being "missing links".

  10. Plastic responses of a sessile prey to multiple predators: a field and experimental study.

    Directory of Open Access Journals (Sweden)

    Philipp Emanuel Hirsch

    Full Text Available Theory predicts that prey facing a combination of predators with different feeding modes have two options: to express a response against the feeding mode of the most dangerous predator, or to express an intermediate response. Intermediate phenotypes protect equally well against several feeding modes, rather than providing specific protection against a single predator. Anti-predator traits that protect against a common feeding mode displayed by all predators should be expressed regardless of predator combination, as there is no need for trade-offs.We studied phenotypic anti-predator responses of zebra mussels to predation threat from a handling-time-limited (crayfish and a gape-size-limited (roach predator. Both predators dislodge mussels from the substrate but diverge in their further feeding modes. Mussels increased expression of a non-specific defense trait (attachment strength against all combinations of predators relative to a control. In response to roach alone, mussels showed a tendency to develop a weaker and more elongated shell. In response to crayfish, mussels developed a harder and rounder shell. When exposed to either a combination of predators or no predator, mussels developed an intermediate phenotype. Mussel growth rate was positively correlated with an elongated weaker shell and negatively correlated with a round strong shell, indicating a trade-off between anti-predator responses. Field observations of prey phenotypes revealed the presence of both anti-predator phenotypes and the trade-off with growth, but intra-specific population density and bottom substrate had a greater influence than predator density.Our results show that two different predators can exert both functionally equivalent and inverse selection pressures on a single prey. Our field study suggests that abiotic factors and prey population density should be considered when attempting to explain phenotypic diversity in the wild.

  11. Study of environmental and biological factors that affect larval survival in sessile coastal marine organisms

    OpenAIRE

    Viladrich Canudas, Núria

    2015-01-01

    La reproducció sexual és un procés biològic fonamental per a la majoria de les espècies vives, sent essencial per a la perpetuació de les espècies i assegurar-ne la diversitat genètica. En invertebrats sèssils marins, com corals i gorgònies, aquest tipus de reproducció, a més, permet la dispersió dels individus, el que facilita la colonització de noves àrees i assegurar el flux de gens entre poblacions. En general, la reproducció sexual es caracteritza per un alt cost energètic, la qual cosa ...

  12. How algae influence sessile marine organisms: The tube worms case of study

    Science.gov (United States)

    Casoli, Edoardo; Bonifazi, Andrea; Ardizzone, Giandomenico; Gravina, Maria Flavia

    2016-09-01

    Tube worms and phytobenthic assemblages in three infralittoral and shallow circalittoral Mediterranean benthic communities developed between 5 and 35 m depth at Punta del Lazzaretto (Giglio Island, Central Thyrrenian sea) were investigated. Despite being three algae-dominated habitats, these displayed different covering both in terms of algal layers and algal morphologies, reflecting different structural organizations. Twenty-eight serpulid taxa have been reported, increasing both diversity and density values from most photophilic to most sciaphilous habitats. Multivariate analyses showed how algal thalli and tube worm assemblages were strongly correlated; substrata are influenced both physically and biologically, providing different conditions for tube worm settlement.

  13. Ectomycorrhizal fungal communities of pedunculate and sessile oak seedlings from bare-root forest nurseries.

    Science.gov (United States)

    Leski, Tomasz; Pietras, Marcin; Rudawska, Maria

    2010-03-01

    In this study, we present the detailed molecular investigation of the ectomycorrhizal (ECM) community of Quercus petraea and Quercus robur seedlings grown in bare-root forest nurseries. In all tested oak samples, mycorrhizal colonization was nearly 100%. Morphological observation and molecular investigations (sequencing of fungal ITS rDNA) revealed a total of 23 mycorrhizal taxa. The most frequent and abundant fungal taxa were Hebeloma sacchariolens, Tuber sp., and Peziza sp.; from the detected fungal taxa, 20 were noted for Q. petraea and 23 for Q. robur. Depending on the nursery, the species richness of identified ECM fungal taxa for both oak species ranged from six to 11 taxa. The mean species richness for all nurseries was 5.36 and 5.82 taxa per Q. petraea and Q. robur sample, respectively. According to the analysis of similarity, ECM fungal communities were similar for Q. petraea and Q. robur (R = 0.019; p = 0.151). On the other hand, detected fungal communities were significantly different between nurseries (R = 0.927; p ectomycorrhizal diversity (in terms of richness, the Shannon diversity, evenness, and Simpson dominance indices) is significantly related to the soil parameters of each nursery. We conclude that individual nursery may be considered as separate ecological niches that strongly discriminate diversity of ECM fungi. PMID:19756776

  14. Low dynamics, high longevity and persistence of sessile structural species dwelling on Mediterranean coralligenous outcrops.

    Directory of Open Access Journals (Sweden)

    Núria Teixidó

    Full Text Available There is still limited understanding of the processes underlying benthic species dynamics in marine coastal habitats, which are of disproportionate importance in terms of productivity and biodiversity. The life-history traits of long-lived benthic species in these habitats are particularly poorly documented. In this study, we assessed decadal patterns of population dynamics for ten sponge and anthozoan species that play key structural roles in coralligenous outcrops (∼25 m depth in two areas of the NW Mediterranean Sea. This study was based on examination of a unique long-term photographic series, which allowed analysis of population dynamics over extensive spatial and time spans for the very first time. Specifically, 671 individuals were censused annually over periods of 25-, 15-, and 5-years. This long-term study quantitatively revealed a common life-history pattern among the ten studied species, despite the fact they present different growth forms. Low mortality rates (3.4% yr(-1 for all species combined and infrequent recruitment events (mean value of 3.1±0.5 SE recruits yr(-1 provided only a very small fraction of the new colonies required to maintain population sizes. Overall, annual mortality and recruitment rates did not differ significantly among years; however, some species displayed important mortality events and recruitment pulses, indicating variability among species. Based on the growth rates of these 10 species, we projected their longevity and, obtained a mean estimated age of 25-200 years. Finally, the low to moderate turnover rates (mean value 0.80% yr(-1 observed among the coralligenous species were in agreement with their low dynamics and persistence. These results offer solid baseline data and reveal that these habitats are among the most vulnerable to the current increases of anthropogenic disturbances.

  15. ADHESIVE-FREE WOOD JOINTS – PART I: SESSILE OAK WOOD (Quercus petraea L.)

    OpenAIRE

    Ramona-Elena DUMITRAȘCU

    2015-01-01

    act: Wood as a raw material is indispensable in various human activities. Its investigation is inexhaustible and its responsible valorization, in accordance with current requirements for re-use and subsequent re-integration, is a priority at national level. Rotational friction as an alternative method of joining wood elements or wooden structures has not been addressed in Romania until now, even if it has been under investigation during the past 15 years in the wood field. T...

  16. Primary duodenal Burkitt lymphoma presenting as sessile, button-like bleeding polyps

    Directory of Open Access Journals (Sweden)

    Ching-Chih Hu

    2015-03-01

    Full Text Available Primary gastrointestinal (GI lymphoma accounts for 30–50% of all extranodal non-Hodgkin’s lymphomas, making the GI tract the most common site of extranodal non-Hodgkin’s lymphomas. Most GI lymphomas belong to the B cell lineage. Burkitt lymphoma (BL is a highly aggressive mature B cell neoplasm that occurs in three forms: endemic, sporadic, and immunodeficiency-associated. Sporadic BL accounts for 1–2% of all adult lymphomas and usually presents as an abdominal manifestation of extranodal disease involving the distal ileum or cecum. Primary BL of the duodenum is rare. However, this report emphasizes the importance of awareness of the malignancy potential of duodenal polyps. We report the case of a 70-year-old woman admitted to our ward with upper GI bleeding due to duodenal polyps. An upper GI endoscopic examination showed button-like polyps with central depression, and an immunohistochemical study of the polyps revealed a high-grade B cell malignancy (BL. Consequently, the patient was treated with aggressive chemotherapy. The tumors regressed after chemotherapy. Although primary duodenal Burkitt lymphoma is very rare, the possibility of malignancy should be considered if a patient presents with duodenal button-like polyps with a central depressed surface.

  17. Sessile serrated lesion and its borderline variant - Variables with impact on recorded data

    DEFF Research Database (Denmark)

    Mohammadi, Mahin; Garbyal, Rajendra S; Kristensen, Michael H.;

    2011-01-01

    has its relation to SPs with subtle aberrant features, falling short of definite SSL-histology, been sufficiently addressed. The aim of this study was to highlight variables that may influence recorded data on SSL and to further discuss the appropriate place of SPs that possess histological attributes...... characterized the present series, though right-sided SSLs occurred significantly more often in older subjects with a trend toward more females. The lower age of patients with SSL/BSSL in the last part of the study reflects the increased focus on hereditary neoplasm. BSSL differed from SSL only by a smaller...

  18. Detection of introduced sessile species on the near shore continental shelf in southern Brazil

    Directory of Open Access Journals (Sweden)

    Janaína de Araújo Bumbeer

    2012-04-01

    Full Text Available Invasion by marine species, often considered a grave threat to marine ecosystems, occurs throughout the world as a consequence of many anthropogenic activities. In coastal Paraná, many factors including shipping, aquaculture and the use of artificial substrates provide suitable environments for the establishment and rapid spread of introduced marine species. To better understand this process, the encrusting community was studied on polyethylene plates (n = 120, 10 x 10 cm that were placed seasonally at fixed locations on the inner continental shelf to detect non-native species. Of the 62 taxa found, 40 were identified to species, 14 of which were native, 9 introduced and 17 cryptogenic. We found a new introduction while most introduced species were previously reported at a nearby estuary with an international port. Possible complementary explanations for these detections are 1 estuaries influence ecological processes on the inner continental shelf, 2 the study area is near the route of cargo and other ships entering the port, 3 other local vectors, such as hulls of fishing and recreational boats, and artificial reefs link the estuary to the offshore areas. Thus, not only are estuaries invaded by exotic species, but also non-indigenous marine species may be present in the open sea where they are likely to colonize artificial substrates.

  19. Sulfide assimilation by ectosymbionts of the sessile ciliate, Zoothamnium niveum

    DEFF Research Database (Denmark)

    Røy, Hans; Vopel, Kay; Huettel, Marcus;

    2009-01-01

    was the free-flowing water although the size of the colonies suggests that they live partly submerged in the diffusive boundary layer. We showed that the filtered volume allows Z. niveum to assimilate sufficient sulfide to sustain the symbiosis at a few micromoles per liter in ambient concentration. Numerical...

  20. Single droplet experimentation on spray drying:evaporation of sessile droplets deposited on a flat surface

    OpenAIRE

    Perdana, J.A.; Fox, M.B.; Schutyser, M.A.I.; Boom, R.M.

    2010-01-01

    Abstract: Individually dispensed droplets were dried on a flat surface to mimic the drying of single droplets during spray drying. A robust dispensing process is presented that generates small droplets (dp>150 µm). A predictive model based on Bernoulli’s law accurately describes droplet size with varying liquids and dispensing parameters. Shrinkage of the droplets, monitored with a camera, was described using mass balance equations. Finally, a Sherwood correlation was derived to describe t...

  1. Role of the free surface in particle deposition during evaporation of colloidal sessile drops

    CERN Document Server

    Masoud, Hassan

    2009-01-01

    Deposition patterns of particles suspended in evaporating colloidal drops are determined by the flow fields within the drops. Using analytically determined velocities, particle motions are then tracked in a Lagrangian sense. It is found that the majority of particles intersect the free surface as it recedes. Such "capture" of particles by the free surface is found to be the major mechanism in establishing the deposition pattern. Patterns are calculated for wetting and non-wetting drops whose contact lines are either pinned or freely moving during evaporation. The distribution of evaporative flux which drives the flows is taken to be that engendered by gas-phase diffusion. The theoretical results are found to agree favorably with available experimental data.

  2. The CRP/FNR family protein Bcam1349 is a c-di-GMP effector that regulates biofilm formation in the respiratory pathogen Burkholderia cenocepacia

    DEFF Research Database (Denmark)

    Fazli, Mustafa; O'Connell, Aileen; Nilsson, Martin;

    2011-01-01

    of a number of components, including cellulose and fimbriae. It was demonstrated that the Bcam1349 protein binds to the promoter region of the cellulose synthase genes, and that this binding is enhanced by the presence of c-di-GMP. The bcam1349 mutant showed reduced virulence in a Galleria mellonella wax moth...

  3. NCBI nr-aa BLAST: CBRC-BTAU-01-3033 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-BTAU-01-3033 ref|ZP_00977438.1| COG2207: AraC-type DNA-binding domain-containing proteins [Burkholder...ia cenocepacia PC184] ref|YP_623398.1| transcriptional regulator, AraC family [Burkholder...ia cenocepacia AU 1054] ref|YP_838462.1| transcriptional regulator, AraC family [Burkholderia cenocepaci...a HI2424] gb|ABF78425.1| transcriptional regulator, AraC family [Burkholderia cen...ocepacia AU 1054] gb|ABK11569.1| transcriptional regulator, AraC family [Burkholderia cenocepacia HI2424] gb

  4. Evaporation of Binary Sessile Drops: Infrared and Acoustic Methods To Track Alcohol Concentration at the Interface and on the Surface.

    Science.gov (United States)

    Chen, Pin; Toubal, Malika; Carlier, Julien; Harmand, Souad; Nongaillard, Bertrand; Bigerelle, Maxence

    2016-09-27

    Evaporation of droplets of three pure liquids (water, 1-butanol, and ethanol) and four binary solutions (5 wt % 1-butanol-water-based solution and 5, 25, and 50 wt % ethanol-water-based solutions) deposited on hydrophobic silicon was investigated. A drop shape analyzer was used to measure the contact angle, diameter, and volume of the droplets. An infrared camera was used for infrared thermal mapping of the droplet's surface. An acoustic high-frequency echography technique was, for the first time, applied to track the alcohol concentration in a binary-solution droplet. Evaporation of pure alcohol droplets was executed at different values of relative humidity (RH), among which the behavior of pure ethanol evaporation was notably influenced by the ambient humidity as a result of high hygrometry. Evaporation of droplets of water and binary solutions was performed at a temperature of 22 °C and a mean humidity of approximately 50%. The exhaustion times of alcohol in the droplets estimated by the acoustic method and the visual method were similar for the water-1-butanol mixture; however, the time estimated by the acoustic method was longer when compared with that estimated by the visual method for the water-ethanol mixture due to the residual ethanol at the bottom of the droplet.

  5. Paternity and gregariousness in the sex-changing sessile marine gastropod Crepidula convexa: comparison with other protandrous Crepidula species.

    Science.gov (United States)

    Le Cam, Sabrina; Riquet, Florentine; Pechenik, Jan A; Viard, Frédérique

    2014-01-01

    In sex-changing animals with internal fertilization, gregarious behavior may increase mating opportunities and the frequency of multiple paternity, thus increasing maternal reproductive success. Crepidula convexa is a direct-developing protandrous gastropod characterized by only modest gregarious behavior compared with previously studied members of the genus: females are frequently found isolated. Using 6 microsatellite markers, we analyzed paternity profiles in 10 broods (25 embryos per mother). The number of assigned fathers varied among families from 1 to 4 fathers per brood. Interestingly, polyandry was not detected in solitary females but only in females grouped with conspecific individuals. Overall, we found an average of 1.8 fathers per brood, but this increased to 2.6 fathers per brood when considering only the nonisolated females. Among 18 unambiguously identified fathers, only 5 were collected in our samples, suggesting substantial male mobility. Comparison with previous paternity analyses in Crepidula fornicata and Crepidula coquimbensis revealed that polyandry appears as a common trait of these sex-changing gastropods despite their different grouping behaviors and life histories. As expected, the level of polyandry was nevertheless lower in the modestly gregarious C. convexa. PMID:24489076

  6. Rapid evolution of sessility in an endemic species flock of the freshwater bivalve Corbicula from ancient lakes on Sulawesi, Indonesia

    OpenAIRE

    von Rintelen, Thomas; Glaubrecht, Matthias

    2005-01-01

    The fauna of ancient lakes frequently contains taxa with highly derived morphologies that resulted from in situ radiation of lacustrine lineages with high antiquity. We employed a molecular mtDNA phylogeny to investigate this claim for corbiculid freshwater bivalves in two ancient lake systems on the Indonesian island Sulawesi. Among the otherwise mobile corbiculid species flock, only one taxon, Posostrea anomioides, in the ancient Lake Poso exhibits a unique habit, i.e. cementing one valve t...

  7. Strategies for recovering of planktonic and sessile cells of Escherichia coli O157:H7 from freshwater environment.

    Science.gov (United States)

    Marucci, Patricia L; Cubitto, María A

    2016-07-01

    The experiments were performed with Escherichia coli O157:H7 EDL 933 in freshwater microcosms at 12 °C. At 35, 45, and 70 days, samples were taken and filtered through 0.45 μm membrane filters. The following alternatives were tested to evaluate the recovery percentage of injured cells: (1) selective media CHROMagar(™)O157 and chromID(™)O157:H7 agar, at 37 °C for 24 h; (2) tryptic soy agar supplemented with yeast extract (TSAE), incubated at 25 °C for 2 or 4 h, then transferred to CHROMagar(™)O157 or chromID(™)O157:H7 agar at 37 °C (TSAE2h-CHROM, TSAE4h-CHROM and TSAE2h-ID, TSAE4h-ID); (3) thin agar layer (TAL) method, TSAE was overlaid on CHROMagar(™)O157 or chromID(™)O157:H7 agar (TALCHROM and TALID, respectively) and incubated at 37 °C for 24 h; and (4) TALCHROM at 25 °C for 4 h, then continued up to complete 24 h at 37 °C (TALCHROM4h). Furthermore, the recovery of E. coli O157:H7 cells adhering to glass coverslips were evaluated to mimic biofilm conditions. The recovery percentages obtained from each alternative were calculated relative to TSAE counts. After 70 days, TSAE4h-CHROM and TALCHROM4h showed the highest recovery percentage (>90 %) from water microcosms. Despite the improved recovery of cell adhering to glass surfaces, the percentages obtained with TSAE4h-CHROM were low. Further studies for the recovery of biofilm-forming E. coli O157:H7 are required. Pre-incubation on TSAE at 25 °C for 4 h, combined with CHROMagar(™)O157, or by thin agar layer method (TALCHROM) enhanced significantly the recovery of viable cells of E. coli O157:H7 after prolonged stay in water microcosms. PMID:27344557

  8. Observations of internal flow inside an evaporating nanofluid sessile droplet in the presence of an entrapped air bubble

    Science.gov (United States)

    Shin, Dong Hwan; Allen, Jeffrey S.; Lee, Seong Hyuk; Choi, Chang Kyoung

    2016-09-01

    Using a unique, near-field microscopy technique, fringe patterns and nanoparticle motions are visualized immediately following a nanofluid droplet deposition on a glass substrate in which an air bubble is entrapped. The nanofluid consists of DI-water, 0.10% Aluminum Oxide nanoparticles with an average diameter of 50 nm, and 0.0005% yellow-green polystyrene fluorescent particles of 1 μm diameter. High-speed, fluorescent-mode confocal imaging enables investigation of depth-wise sectioned particle movements in the nanofluid droplet inside which a bubble is entrapped. The static contact angle is increased when a bubble is applied. In the presence of the bubble in the droplet, the observed flow toward the center of the droplet is opposite to the flow observed in a droplet without the bubble. When the bubble is present, the evaporation process is retarded. Also, random motion is observed in the contact line region instead of the typical evaporation-driven flow toward the droplet edge. Once the bubble bursts, however, the total evaporation time decreases due to the change in the contact line characteristics. Moreover, the area of fringe patterns beneath the bubble increases with time. Discussed herein is a unique internal flow that has not been observed in nanofluid droplet evaporation.

  9. Adult mouse subventricular zone stem and progenitor cells are sessile and epidermal growth factor receptor negatively regulates neuroblast migration.

    Directory of Open Access Journals (Sweden)

    Yongsoo Kim

    Full Text Available BACKGROUND: The adult subventricular zone (SVZ contains stem and progenitor cells that generate neuroblasts throughout life. Although it is well accepted that SVZ neuroblasts are migratory, recent evidence suggests their progenitor cells may also exhibit motility. Since stem and progenitor cells are proliferative and multipotential, if they were also able to move would have important implications for SVZ neurogenesis and its potential for repair. METHODOLOGY/PRINCIPAL FINDINGS: We studied whether SVZ stem and/or progenitor cells are motile in transgenic GFP+ slices with two photon time lapse microscopy and post hoc immunohistochemistry. We found that stem and progenitor cells; mGFAP-GFP+ cells, bright nestin-GFP+ cells and Mash1+ cells were stationary in the SVZ and rostral migratory stream (RMS. In our search for motile progenitor cells, we uncovered a population of motile betaIII-tubulin+ neuroblasts that expressed low levels of epidermal growth factor receptor (EGFr. This was intriguing since EGFr drives proliferation in the SVZ and affects migration in other systems. Thus we examined the potential role of EGFr in modulating SVZ migration. Interestingly, EGFr(low neuroblasts moved slower and in more tortuous patterns than EGFr-negative neuroblasts. We next questioned whether EGFr stimulation affects SVZ cell migration by imaging Gad65-GFP+ neuroblasts in the presence of transforming growth factor alpha (TGF-alpha, an EGFr-selective agonist. Indeed, acute exposure to TGF-alpha decreased the percentage of motile cells by approximately 40%. CONCLUSIONS/SIGNIFICANCE: In summary, the present study directly shows that SVZ stem and progenitor cells are static, that EGFr is retained on some neuroblasts, and that EGFr stimulation negatively regulates migration. This result suggests an additional role for EGFr signaling in the SVZ.

  10. Dynamics of development and dispersal in sessile microbial communities: examples from Pseudomonas aeruginosa and Pseudomonas putida model biofilms

    DEFF Research Database (Denmark)

    Klausen, M.; Gjermansen, Morten; Kreft, J.-U.;

    2006-01-01

    Surface-associated microbial communities in many cases display dynamic developmental patterns. Model biofilms formed by Pseudomonas aeruginosa and Pseudomonas putida in laboratory flow-chamber setups represent examples of such behaviour. Dependent on the experimental conditions the bacteria in...... organisms do not possess comprehensive genetic programs for biofilm development. Instead the bacteria appear to have evolved a number of different mechanisms to optimize surface colonization, of which they express a subset in response to the prevailing environmental conditions. These mechanisms include the...... ability to regulate cellular adhesiveness and migration in response to micro-environmental signals including those secreted by the bacteria themselves....

  11. The effects of sodium hypochlorite against selected drinking water-isolated bacteria in planktonic and sessile states

    OpenAIRE

    I.B. GOMES; Simões, M.; Simões, Lúcia C.

    2016-01-01

    Chlorine is the most commonly used agent for general disinfection, particularly for microbial growth control in drinking water distribution systems. The goals of this study were to understand the effects of chlorine, as sodium hypochlorite (NaOCl), on bacterial membrane physicochemical properties (surface charge, surface tension and hydrophobicity) and on motility of two emerging pathogens isolated from drinking water, Acinetobacter calcoaceticus and Stenotrophomonas maltophilia. The effects ...

  12. NCBI nr-aa BLAST: CBRC-PVAM-01-0739 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-PVAM-01-0739 ref|YP_626364.1| PE-PGRS family protein [Burkholderia cenocepacia... AU 1054] gb|ABF81391.1| PE-PGRS family protein [Burkholderia cenocepacia AU 1054] YP_626364.1 5e-10 26% ...

  13. NCBI nr-aa BLAST: CBRC-XTRO-01-0143 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-XTRO-01-0143 ref|ZP_01564992.1| hypothetical protein Bcenmc03DRAFT_7449 [Burkholder...ia cenocepacia MC0-3] gb|EAV57107.1| hypothetical protein Bcenmc03DRAFT_7449 [Burkholderia cenocepacia MC0-3] ZP_01564992.1 0.002 23% ...

  14. NCBI nr-aa BLAST: CBRC-FRUB-02-0738 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-FRUB-02-0738 ref|ZP_01567160.1| Haemagluttinin motif [Burkholderia cenocepacia... MC0-3] gb|EAV54748.1| Haemagluttinin motif [Burkholderia cenocepacia MC0-3] ZP_01567160.1 4e-24 29% ...

  15. NCBI nr-aa BLAST: CBRC-CREM-01-1362 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-CREM-01-1362 ref|ZP_01564035.1| 200 kDa antigen p200, putative [Burkholderia c...enocepacia MC0-3] gb|EAV58079.1| 200 kDa antigen p200, putative [Burkholderia cenocepacia MC0-3] ZP_01564035.1 7e-36 33% ...

  16. NCBI nr-aa BLAST: CBRC-CJAC-01-1085 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-CJAC-01-1085 ref|ZP_01559985.1| conserved hypothetical protein [Burkholderia c...enocepacia MC0-3] gb|EAV61841.1| conserved hypothetical protein [Burkholderia cenocepacia MC0-3] ZP_01559985.1 2e-58 63% ...

  17. NCBI nr-aa BLAST: CBRC-DMEL-08-0031 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-DMEL-08-0031 ref|YP_838849.1| Haemagluttinin domain protein [Burkholderia ceno...cepacia HI2424] gb|ABK11956.1| Haemagluttinin domain protein [Burkholderia cenocepacia HI2424] YP_838849.1 3e-09 31% ...

  18. NCBI nr-aa BLAST: CBRC-RNOR-23-0023 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-RNOR-23-0023 ref|YP_840446.1| YadA C-terminal domain protein [Burkholderia cen...ocepacia HI2424] gb|ABK13553.1| YadA C-terminal domain protein [Burkholderia cenocepacia HI2424] YP_840446.1 1.0 31% ...

  19. NCBI nr-aa BLAST: CBRC-CBRE-01-0787 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-CBRE-01-0787 ref|YP_840388.1| PE-PGRS family protein [Burkholderia cenocepacia... HI2424] gb|ABK13495.1| PE-PGRS family protein [Burkholderia cenocepacia HI2424] YP_840388.1 7e-04 28% ...

  20. NCBI nr-aa BLAST: CBRC-CJAC-01-0283 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-CJAC-01-0283 ref|YP_840388.1| PE-PGRS family protein [Burkholderia cenocepacia... HI2424] gb|ABK13495.1| PE-PGRS family protein [Burkholderia cenocepacia HI2424] YP_840388.1 2e-09 26% ...

  1. NCBI nr-aa BLAST: CBRC-DSIM-01-0065 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-DSIM-01-0065 ref|ZP_01559985.1| conserved hypothetical protein [Burkholderia c...enocepacia MC0-3] gb|EAV61841.1| conserved hypothetical protein [Burkholderia cenocepacia MC0-3] ZP_01559985.1 8e-50 46% ...

  2. NCBI nr-aa BLAST: CBRC-CJAC-01-0227 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-CJAC-01-0227 ref|ZP_01566546.1| Collagen triple helix repeat [Burkholderia cen...ocepacia MC0-3] gb|EAV55423.1| Collagen triple helix repeat [Burkholderia cenocepacia MC0-3] ZP_01566546.1 2e-18 52% ...

  3. NCBI nr-aa BLAST: CBRC-GACU-01-0025 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-GACU-01-0025 ref|ZP_01566546.1| Collagen triple helix repeat [Burkholderia cen...ocepacia MC0-3] gb|EAV55423.1| Collagen triple helix repeat [Burkholderia cenocepacia MC0-3] ZP_01566546.1 8e-15 33% ...

  4. Conserving biodiversity in a human-dominated world: degradation of marine sessile communities within a protected area with conflicting human uses.

    Directory of Open Access Journals (Sweden)

    Valeriano Parravicini

    Full Text Available Conservation research aims at understanding whether present protection schemes are adequate for the maintenance of ecosystems structure and function across time. We evaluated long-term variation in rocky reef communities by comparing sites surveyed in 1993 and again in 2008. This research took place in Tigullio Gulf, an emblematic case study where various conservation measures, including a marine protected area, have been implemented to manage multiple human uses. Contrary to our prediction that protection should have favored ecosystem stability, we found that communities subjected to conservation measures (especially within the marine protected area exhibited the greatest variation toward architectural complexity loss. Between 1993 and 2008, chronic anthropogenic pressures (especially organic load that had already altered unprotected sites in 1993 expanded their influence into protected areas. This expansion of human pressure likely explains our observed changes in the benthic communities. Our results suggest that adaptive ecosystem-based management (EBM, that is management taking into account human interactions, informed by continuous monitoring, is needed in order to attempt reversing the current trend towards less architecturally complex communities. Protected areas are not sufficient to stop ecosystem alteration by pressures coming from outside. Monitoring, and consequent management actions, should therefore extend to cover the relevant scales of those pressures.

  5. Mixed culture biofilms of Salmonella Typhimurium and cultivable indigenous microorganisms on lettuce show enhanced resistance of their sessile cells to cold oxygen plasma.

    Science.gov (United States)

    Jahid, Iqbal Kabir; Han, Noori; Zhang, Cheng-Yi; Ha, Sang-Do

    2015-04-01

    Control of foodborne pathogens in fresh produce is crucial for food safety, and numerous Salmonella Typhimurium (ST) outbreaks have been reported already. The present study was done to assess effectiveness of cold oxygen plasma (COP) against biofilms of ST mixed with cultivable indigenous microorganisms (CIM). ST and CIM were grown at 15 °C as monocultures and mixed cultures for planktonic state, biofilm on stainless steel, and lettuce leaves. Thereafter, the samples were treated with COP and surviving populations were counted using plate counting methods. Biofilms and stomatal colonization were examined using field emission scanning electron microscopy (FESEM) and food quality was assessed after treatment. Mixed cultures of ST and CIM showed an antagonistic interaction on lettuce but not on SS or in planktonic state. Mixed cultures showed significantly (p biofilms on lettuce but not on SS or planktonic state. Shift from smooth to rugose colony type was found for planktonic and for biofilms on SS but not on lettuce for ST. Mixed culture biofilms colonized stomata on the inside as demonstrated by FESEM. Although, lettuce quality was not affected by COP, this technology has to be optimized for further development of the successful inactivation of complex multispecies biofilm structures presented by real food environment.

  6. In vitro activity of the new water-dispersible Fe{sub 3}O{sub 4}@usnic acid nanostructure against planktonic and sessile bacterial cells

    Energy Technology Data Exchange (ETDEWEB)

    Grumezescu, Alexandru Mihai, E-mail: grumezescu@yahoo.com [Faculty of Applied Chemistry and Materials Science, University Politehnica of Bucharest, Department of Science and Engineering of Oxidic Materials and Nanomaterials (Romania); Cotar, Ani Ioana [Faculty of Biology, University of Bucharest, Department of Microbiology Immunology (Romania); Andronescu, Ecaterina; Ficai, Anton; Ghitulica, Cristina Daniela; Grumezescu, Valentina; Vasile, Bogdan Stefan [Faculty of Applied Chemistry and Materials Science, University Politehnica of Bucharest, Department of Science and Engineering of Oxidic Materials and Nanomaterials (Romania); Chifiriuc, Mariana Carmen [Faculty of Biology, University of Bucharest, Department of Microbiology Immunology (Romania)

    2013-07-15

    A new water-dispersible nanostructure based on magnetite (Fe{sub 3}O{sub 4}) and usnic acid (UA) was prepared in a well-shaped spherical form by a precipitation method. Nanoparticles were well individualized and homogeneous in size. The presence of Fe{sub 3}O{sub 4}@UA was confirmed by transmission electron microscopy, Fourier transform-infrared spectroscopy, and X-ray diffraction. The UA was entrapped in the magnetic nanoparticles during preparation and the amount of entrapped UA was estimated by thermogravimetric analysis. Fabricated nanostructures were tested on planktonic cells growth (minimal inhibitory concentration assay) and biofilm development on Gram-positive Staphylococcusaureus (S.aureus),Enterococcus faecalis (E.faecalis) and Gram-negative Escherichia coli (E.coli),Pseudomonasaeruginosa (P.aeruginosa) reference strains. Concerning the influence of Fe{sub 3}O{sub 4}@UA on the planktonic bacterial cells, the functionalized magnetic nanoparticles exhibited a significantly improved antimicrobial activity against E.faecalis and E.coli, as compared with the Fe{sub 3}O{sub 4} control. The UA incorporated into the magnetic nanoparticles exhibited a very significant inhibitory effect on the biofilm formed by the S.aureus and E.faecalis, on a wide range of concentrations, while in case of the Gram-negative microbial strains, the UA-loaded nanoparticles inhibited the E.coli biofilm development, only at high concentrations, while for P.aeruginosa biofilms, no inhibitory effect was observed. The obtained results demonstrate that the new water-dispersible Fe{sub 3}O{sub 4}@UA nanosystem, combining the advantages of the intrinsic antimicrobial features of the UA with the higher surface to volume ratio provided by the magnetic nanocarrier dispersible in water, exhibits efficient antimicrobial activity against planktonic and adherent cells, especially on Gram-positive strains.

  7. Quantifying genetic variations and phenotypic plasticity of leaf phenology and growth for two temperate Fagaceae species (sessile oak and european beech)

    Science.gov (United States)

    Delzon, Sylvain; Vitasse, Yann; Alberto, Florian; Bresson, Caroline; Kremer, Antoine

    2010-05-01

    Under current climate change, research on inherent adaptive capacities of organisms is crucial to assess future evolutionary changes of natural populations. Genetic diversity and phenotypic plasticity constitute adaptative capacities that could allow populations to respond to new environmental conditions. The aim of the present study was (i) to determine whether there are genetic variations among populations from altitudinal gradients using a lowland common garden experiment and (ii) to assess the magnitude of phenotypic plasticity using a reciprocal transplant experiment (5 elevations from 100 to 1600 m asl.) for leaf phenology (flushing and senescence) and growth of two fagaceae species (Fagus sylvatica and Quercus petraea). We found significant differences in phenology among provenances for most species, and evidenced that these among-population differences in phenology were related to annual temperature of the provenance sites for both species. It's noteworthy that, along the same climatic gradient, the species exhibited opposite genetic clines: beech populations from high elevation flushed earlier than those of low elevation, whereas we observed an opposite trend for oak. Finally, we highlighted that both phenology timing and growth rate were highly consistent year to year. The results demonstrated that in spite of the proximity of the populations in their natural area, altitude led to genetic differentiations in their phenology and growth. Moreover, a high phenological plasticity was found for both species. We evidenced that reaction norms of flushing timing to temperature followed linear clinal trends for both species with an average shift of 5.7 days per degree increase. Timing of leaf senescence exhibited hyperbolic trends for beech and no or slight trends for oak. Furthermore, within species, there was no difference in magnitude of phenological plasticity among populations neither for flushing, nor for senescence. Consequently, for both species, the growing season length increased to reach maximum values for annual temperature ranging from 10°C to 13°C according to the population. These adaptive capacities (genetic differentiations and high magnitude of plasticity) could allow populations to respond immediately to temperature variations in term of leaf phenology and then to cope with current climate change. Finally, we also highlight that current populations tend to occupy suboptimal environments, i.e, populations inhabit climates colder that their optimum.

  8. Molecular discrimination of sessile rectal adenomas from carcinomas for a better treatment choice : integration of chromosomal instability patterns and expression array analysis

    NARCIS (Netherlands)

    Lips, Esther Hélène

    2008-01-01

    Total mesorectal excision (TME) is the standard treatment for rectal cancer, while transanal endoscopic microsurgery (TEM) is a recently introduced surgical approach for the treatment of rectal adenomas. Incorrect preoperative staging before TEM is a problem. Therefore the aim of this thesis was to

  9. The stem cell marker CD133 is highly expressed in sessile serrated adenoma and its borderline variant compared with hyperplastic polyp

    DEFF Research Database (Denmark)

    Mohammadi, Mahin; Bzorek, Michael; Bonde, Jesper Hansen;

    2013-01-01

    and to polyp site and size. Ignoring SCRC status, CD133 was expressed more prominently in SSA/P/Ls than in HPs. The values for BSSA/P/Ls fell in between, yet closer to the SSA/P/L scorings. This observation was retained in the context of SCRC and for SSA/P/Ls not associated with SCRC. Right-sidedness and large...

  10. A green triple biocide cocktail consisting of a biocide, EDDS and methanol for the mitigation of planktonic and sessile sulfate-reducing bacteria.

    Science.gov (United States)

    Wen, J; Xu, D; Gu, T; Raad, I

    2012-02-01

    Sulfate-reducing bacteria (SRB) cause souring and their biofilms are often the culprit in Microbiologically Influenced Corrosion (MIC). The two most common green biocides for SRB treatment are tetrakis-hydroxymethylphosphonium sulfate (THPS) and glutaraldehyde. It is unlikely that there will be another equally effective green biocide in the market any time soon. This means more effective biocide treatment probably will rely on biocide cocktails. In this work a triple biocide cocktail consisting of glutaraldehyde or THPS, ethylenediaminedisuccinate (EDDS) and methanol was used to treat planktonic SRB and to remove established SRB biofilms. Desulfovibrio vulgaris (ATCC 7757), a corrosive SRB was used as an example in the tests. Laboratory results indicated that with the addition of 10-15% (v/v) methanol to the glutaraldehyde and EDDS double combination, mitigation of planktonic SRB growth in ATCC 1249 medium and a diluted medium turned from inhibition to a kill effect while the chelator dosage was cut from 2,000 to 1,000 ppm. Biofilm removal was achieved when 50 ppm glutaraldehyde combined with 15% methanol and 1,000 ppm EDDS was used. THPS showed similar effects when it was used to replace glutaraldehyde in the triple biocide cocktail to treat planktonic SRB. PMID:22806837

  11. Conserving biodiversity in a human-dominated world: degradation of marine sessile communities within a protected area with conflicting human uses.

    Science.gov (United States)

    Parravicini, Valeriano; Micheli, Fiorenza; Montefalcone, Monica; Morri, Carla; Villa, Elisa; Castellano, Michela; Povero, Paolo; Bianchi, Carlo Nike

    2013-01-01

    Conservation research aims at understanding whether present protection schemes are adequate for the maintenance of ecosystems structure and function across time. We evaluated long-term variation in rocky reef communities by comparing sites surveyed in 1993 and again in 2008. This research took place in Tigullio Gulf, an emblematic case study where various conservation measures, including a marine protected area, have been implemented to manage multiple human uses. Contrary to our prediction that protection should have favored ecosystem stability, we found that communities subjected to conservation measures (especially within the marine protected area) exhibited the greatest variation toward architectural complexity loss. Between 1993 and 2008, chronic anthropogenic pressures (especially organic load) that had already altered unprotected sites in 1993 expanded their influence into protected areas. This expansion of human pressure likely explains our observed changes in the benthic communities. Our results suggest that adaptive ecosystem-based management (EBM), that is management taking into account human interactions, informed by continuous monitoring, is needed in order to attempt reversing the current trend towards less architecturally complex communities. Protected areas are not sufficient to stop ecosystem alteration by pressures coming from outside. Monitoring, and consequent management actions, should therefore extend to cover the relevant scales of those pressures. PMID:24143173

  12. Comparing the chlorine disinfection of detached biofilm clusters with those of sessile biofilms and planktonic cells in single- and dual-species cultures.

    Science.gov (United States)

    Behnke, Sabrina; Parker, Albert E; Woodall, Dawn; Camper, Anne K

    2011-10-01

    Although the detachment of cells from biofilms is of fundamental importance to the dissemination of organisms in both public health and clinical settings, the disinfection efficacies of commonly used biocides on detached biofilm particles have not been investigated. Therefore, the question arises whether cells in detached aggregates can be killed with disinfectant concentrations sufficient to inactivate planktonic cells. Burkholderia cepacia and Pseudomonas aeruginosa were grown in standardized laboratory reactors as single species and in coculture. Cluster size distributions in chemostats and biofilm reactor effluent were measured. Chlorine susceptibility was assessed for planktonic cultures, attached biofilm, and particles and cells detached from the biofilm. Disinfection tolerance generally increased with a higher percentage of larger cell clusters in the chemostat and detached biofilm. Samples with a lower percentage of large clusters were more easily disinfected. Thus, disinfection tolerance depended on the cluster size distribution rather than sample type for chemostat and detached biofilm. Intact biofilms were more tolerant to chlorine independent of species. Homogenization of samples led to significantly increased susceptibility in all biofilm samples as well as detached clusters for single-species B. cepacia, B. cepacia in coculture, and P. aeruginosa in coculture. The disinfection efficacy was also dependent on species composition; coculture was advantageous to the survival of both species when grown as a biofilm or as clusters detached from biofilm but, surprisingly, resulted in a lower disinfection tolerance when they were grown as a mixed planktonic culture.

  13. Characterization of the Poly-β-1,6-N-Acetylglucosamine Polysaccharide Component of Burkholderia Biofilms ▿

    OpenAIRE

    Yakandawala, Nandadeva; Gawande, Purushottam V.; LoVetri, Karen; Cardona, Silvia T.; Romeo, Tony; Nitz, Mark; Madhyastha, Srinivasa

    2011-01-01

    We demonstrated the production of poly-β-1,6-N-acetylglucosamine (PNAG) polysaccharide in the biofilms of Burkholderia multivorans, Burkholderia vietnamiensis, Burkholderia ambifaria, Burkholderia cepacia, and Burkholderia cenocepacia using an immunoblot assay for PNAG. These results were confirmed by further studies, which showed that the PNAG hydrolase, dispersin B, eliminated immunoreactivity of extracts from the species that were tested (B. cenocepacia and B. multivorans). Dispersin B als...

  14. The Effect of Treating Sessile Polyp of Alimental Tract through EMR%内镜黏膜切除术(EMR)治疗消化道无蒂息肉的疗效

    Institute of Scientific and Technical Information of China (English)

    肖琳; 杨坚

    2012-01-01

    目的 总结评价消化内镜黏膜切除术(EMR) 治疗消化道无蒂息肉的疗效.方法 收集分析我院93 例患者,124 个位点的食管胃及结直肠无蒂息肉临床资料,采用消化内镜下黏膜切除术治疗,并对所有切除标本进行病理学检查,术后1、3、6、12 个月和长期胃镜、结肠镜随访复查.结果 所有患者(100% )完整切除,术后1 年复查中未发现残留息肉组织,3 例切除时已经恶变患者术后3 年随访未发现复发和转移病灶,4 例患者术后瘢痕脱落后出血经内镜下止血后出血停止,未发现穿孔和其它并发症发生.结论 消化内镜下黏膜切除术是治疗消化道无蒂息肉的安全和有效的方法.

  15. Atividade antimicrobiana de óleos essenciais em bactérias patogênicas de origem alimentar Antimicrobial activity of essential oils against sessile and planktonic pathogens of food source

    Directory of Open Access Journals (Sweden)

    C. Valeriano

    2012-01-01

    Full Text Available Objetivou-se identificar e quantificar os constituintes e avaliar a atividade antimicrobiana dos óleos essenciais de Mentha piperita, Cymbopogon citratus, Ocimum basilicum e Origanum majorana contra cepas de Escherichia coli enteropatogênica, Salmonella enterica Enteritidis, Listeria monocytogenes e Enterobacter sakazaki. A obtenção dos óleos essenciais foi realizada a partir de folhas secas, empregando-se a técnica de hidrodestilação e utilizando-se a aparelho de Clevenger modificado. A atividade antibacteriana dos óleos essenciais foi determinada pelo método de difusão em ágar. Observou-se que os óleos essenciais inibiram o crescimento bacteriano, mas a efetividade foi variada. Entre os óleos essenciais testados, M. piperita apresentou maior atividade antibacteriana para E. coli, (8.106 UA mL-1 quando comparada as demais bactérias, atividade moderada para Salmonella enterica Enteritidis e Enterobacter sakazakii (1.706 e 3.200 UA mL-1 respectivamente e baixa atividade para Listeria monocytogenes (106,67 UA mL-1. Já óleo essencial de Cymbopogon citratus apresentou maior atividade antimicrobiana frente a E. coli (9.386 UA mL-1 e atividade moderada frente a Enterobacter sakazakii, Salmonella enterica Enteritidis e Listeria monocytogenes (2.773 UA mL-1 para ambas. Ocimum basilicum apresentou maior atividade antibacteriana frente E. coli e Enterobacter sakazakii (6.826 e 8.106 UA mL-1 respectivamente, moderada atividade frente a Salmonella enterica Enteritidis (1.600 UA mL-1 e não apresentou atividade frente a Listeria monocytogenes.Origanum majorana também foi testado neste estudo e apresentou maior atividade antimicrobiana frente E. coli (5.973 UA mL-1, atividade moderada para Salmonella enterica Enteritidis e Enterobacter sakazakii (1.706 e 2.346 UA mL-1 , respectivamente e não apresentou atividade para Listeria monocytogenes.ABSTRACT The objective of this work was to identify and quantify the constituents, and to evaluate the antimicrobial activity of the essential oils from Mentha piperita, Cymbopogon citratus, Ocimum basilicum and Origanum majorana, against enteropathogenic Escherichia coli, Salmonella enterica Enteritidis, Listeria monocytogenes and Enterobacter sakazakii. The essential oils were obtained from dried leaves by using the hydrodistillation technique and the modified Clevenger apparatus, and their bacterial activity was determined by using the agar diffusion technique. The essential oils inhibited bacterial growth, but their effectiveness was varied. Among the essential oils tested, that from M. piperita showed a greater antimicrobial activity against E. coli (8.106 UA mL-1, moderate activity for S. enterica Enteritidis and E. sakazakii (1.706 e 3.200 UA mL-1 respectively and low activity for L. monocytogenes (106,67 UA mL-1. However, the essential oil from C. citratus presented a greater antimicrobial activity against E. coli (9.386 UA mL-1 and a moderate activity against E. sakazakii, S. enterica Enteritidis and L. monocytogenes (2.773 UA mL-1 for both. The essential oil from O. basilicum showed a greater antimicrobial activity against E. coli and E. sakazakii (6.826 e 8.106 UA mL-1 respectively,moderate activity against S. enterica Enteritidis (1.600 UA mL-1, and was inactive against L, monocytogenes. Origanum majorana, which was also tested in our work, showed a greater antibacterial activity against E. coli, (5.973 UA mL-1 moderate activity against S. enterica Enteritidis and E. sakazakii (1.706 e 2.346 UA mL-1 , respectively, and was inactive against L. monocytogenes.

  16. A Burkholderia Type VI Effector Deamidates Rho GTPases to Activate the Pyrin Inflammasome and Trigger Inflammation.

    Science.gov (United States)

    Aubert, Daniel F; Xu, Hao; Yang, Jieling; Shi, Xuyan; Gao, Wenqing; Li, Lin; Bisaro, Fabiana; Chen, She; Valvano, Miguel A; Shao, Feng

    2016-05-11

    Burkholderia cenocepacia is an opportunistic pathogen of the cystic fibrosis lung that elicits a strong inflammatory response. B. cenocepacia employs a type VI secretion system (T6SS) to survive in macrophages by disarming Rho-type GTPases, causing actin cytoskeletal defects. Here, we identified TecA, a non-VgrG T6SS effector responsible for actin disruption. TecA and other bacterial homologs bear a cysteine protease-like catalytic triad, which inactivates Rho GTPases by deamidating a conserved asparagine in the GTPase switch-I region. RhoA deamidation induces caspase-1 inflammasome activation, which is mediated by the familial Mediterranean fever disease protein Pyrin. In mouse infection, the deamidase activity of TecA is necessary and sufficient for B. cenocepacia-triggered lung inflammation and also protects mice from lethal B. cenocepacia infection. Therefore, Burkholderia TecA is a T6SS effector that modifies a eukaryotic target through an asparagine deamidase activity, which in turn elicits host cell death and inflammation through activation of the Pyrin inflammasome. PMID:27133449

  17. Dicty_cDB: Contig-U05760-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available clone SSL335. 408 e-110 1 ( DX489133 ) Cpl30925 Papaya Genomic DNA BAC Library Carica pa... 50 0.079 1 ( CP000852 ) Caldivirga maqui...-20 CP000960_695( CP000960 |pid:none) Burkholderia cenocepacia MC0-3 c... 100 2e-20 CP000852_722( CP000852 |pid:none) Caldivirga maqu

  18. The influence of substrate's elasticity and thermal properties on drop evaporation

    OpenAIRE

    Camarinha Lopes, Marcus

    2013-01-01

    This work contributes to expand the scientific knowledge on sessile drop evaporation by presenting experimental investigations on the influence of substrate’s elasticity, thermal conductivity, thermal diffusivity and wettability on the evaporation of a sessile drop. Performed experimental investigations show that soft substrates (Young’s modulus below 10 MPa) are able to directly influence the dynamics of the triple-phase-contact-line (TPCL) of a sessile drop by influencing its receding c...

  19. Species Distribution and Ribotype Diversity of Burkholderia cepacia Complex Isolates from French Patients with Cystic Fibrosis

    OpenAIRE

    Brisse, Sylvain; Cordevant, Christophe; Vandamme, Peter; Bidet, Philippe; Loukil, Chawki; Chabanon, Gérard; Lange, Marc; Bingen, Edouard

    2004-01-01

    A total of 153 Burkholderia cepacia strains obtained from 153 French patients with cystic fibrosis were identified as Burkholderia multivorans (51.6%) or Burkholderia cenocepacia (45.1%). Eighty-two genotypes were identified using PvuII and EcoRI ribotyping. B. multivorans genotype A (found in 32 French patients) and two other genotypes were also identified among isolates from Austrian, German, Italian, and Canadian patients.

  20. Single amino acid substitution in homogentisate 1,2-dioxygenase is responsible for pigmentation in a subset of Burkholderia cepacia complex isolates

    OpenAIRE

    Gonyar, Laura A.; Fankhauser, Sarah C.; Joanna B Goldberg

    2014-01-01

    The Burkholderia cepacia complex (Bcc) is a group of Gram-negative bacilli that are ubiquitous in the environment and have emerged over the past 30 years as opportunistic pathogens in immunocompromised populations, specifically individuals with cystic fibrosis (CF) and chronic granulomatous disease. This complex of at least 18 distinct species is phenotypically and genetically diverse. One phenotype observed in a subset of Burkholderia cenocepacia (a prominent Bcc pathogen) isolates is the ab...

  1. The identity of Prismatomeris subsessilis King & Gamble (Rubiaceae, Rubioideae)

    NARCIS (Netherlands)

    Johansson, J.T.; Wong, K.M.

    1988-01-01

    The genus Gentingia (Rubiaceae, Rubioideae) is described to accommodate the species G. subsessilis. It is a small tree or shrub with white, sessile or almost sessile, terminal flowers and glossy blackish, 1- or 2-seeded drupes, and is known only from submontane rain forests in NW. Peninsular Malaysi

  2. Diversity and community structure of epibenthic invertebrates and fish in the North Sea

    DEFF Research Database (Denmark)

    Callaway, R.; Alsväg, J.; de Boois, I.;

    2002-01-01

    of epibenthos of the southern North Sea was dominated by free- living species, whilst north of the 50 m contour sessile species prevailed. A hybrid area, with sessile species typical of the north and free-living species characteristic of the south, was found off the Norfolk and Flamborough coast stretching...

  3. Polyphasic characterisation of Burkholderia cepacia complex species isolated from children with cystic fibrosis

    Science.gov (United States)

    Vicenzi, Fernando José; Pillonetto, Marcelo; de Souza, Helena Aguilar Peres Homem de Mello; Palmeiro, Jussara Kasuko; Riedi, Carlos Antônio; Rosario-Filho, Nelson Augusto; Dalla-Costa, Libera Maria

    2016-01-01

    Cystic fibrosis (CF) patients with Burkholderia cepacia complex (Bcc) pulmonary infections have high morbidity and mortality. The aim of this study was to compare different methods for identification of Bcc species isolated from paediatric CF patients. Oropharyngeal swabs from children with CF were used to obtain isolates of Bcc samples to evaluate six different tests for strain identification. Conventional (CPT) and automatised (APT) phenotypic tests, polymerase chain reaction (PCR)-recA, restriction fragment length polymorphism-recA, recAsequencing, and matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) were applied. Bacterial isolates were also tested for antimicrobial susceptibility. PCR-recA analysis showed that 36 out of the 54 isolates were Bcc. Kappa index data indicated almost perfect agreement between CPT and APT, CPT and PCR-recA, and APT and PCR-recA to identify Bcc, and MALDI-TOF and recAsequencing to identify Bcc species. The recAsequencing data and the MALDI-TOF data agreed in 97.2% of the isolates. Based on recA sequencing, the most common species identified were Burkholderia cenocepacia IIIA (33.4%),Burkholderia vietnamiensis (30.6%), B. cenocepaciaIIIB (27.8%), Burkholderia multivorans (5.5%), and B. cepacia (2.7%). MALDI-TOF proved to be a useful tool for identification of Bcc species obtained from CF patients, although it was not able to identify B. cenocepacia subtypes. PMID:26814642

  4. Marine benthos - A future perspective

    Digital Repository Service at National Institute of Oceanography (India)

    Govindan, K.

    Benthic organisms are reported from different kinds of substrate like hard bottom, soft bottom, coarse bottom and also from organic matter and other macrodebris. Benthos are in general, sessile and slow moving in nature. 75% of benthic animals live...

  5. Punicaceae

    NARCIS (Netherlands)

    Backer, C.A.

    1948-01-01

    Shrubs or small trees, usually spiny. Leaves opposite, alternate or fascicled, exstipulate, simple, entire, penninerved, small. Flowers terminal and subterminal, sessile or nearly so, rather large, ♀, actinomorphic. Calyx thickly coriaceous, coloured, gamophyllous; tube campanulate-urceolate, adnate

  6. Droseraceae

    NARCIS (Netherlands)

    Steenis, van C.G.G.J.

    1948-01-01

    Small terrestrial or aquatic, insectivorous herbs. Primary root often undeveloped, stembase with adventitious roots, sometimes tuberous. Leaves spirally arranged, often in basal rosettes, rarely whorled, provided with sessile or stipitate sticky glands, marginal glands longest, often circinate when

  7. Progression and tumor heterogeneity analysis in early rectal cancer

    NARCIS (Netherlands)

    E.H. Lips (Esther); R. van Eijk (Ronald); E.J.R. de Graaf (Eelco); P. Doornebosch (Pascal); N.F.C.C. de Miranda (Noel); J. Oosting (Jan); T.M. Karsten (Thomas); P.H.C. Eilers (Paul); R.A.E.M. Tollenaar (Robert); T. van Wezel (Tom); H. Morreau (Hans)

    2008-01-01

    textabstractPurpose: Adequate preoperative staging of large sessile rectal tumors requires identifying adenomas that already contain an invasive focus, specifically those that are growing in or beyond the submucosa. We systematically compared chromosomal instability patterns in adenoma and carcinoma

  8. The influence of light and water flow on the growth and physiology of the scleractinian coral Galaxea fascicularis

    NARCIS (Netherlands)

    Schutter, M.

    2010-01-01

    Background Zooxanthellate scleractinian corals are sessile colonial animals that live in symbiosis with photosynthetic algae, the zooxanthellae. They can feed both phototrophically and heterotrophically and produce an external skeleton of calcium carbonate, which process is enhanced by light. They

  9. Benthic communities associated with ferromanganese nodules from the Central Indian Ocean

    Digital Repository Service at National Institute of Oceanography (India)

    Ingole, B.S.; Pavithran, S.; Goltekar, R.

    for grazers, shelter for burrowers and sessile organisms as well as protection for mobile fauna. It is concluded that benthic organisms like nematodes, polychaetes and foraminiferas may have strong influence on nodule formation and growth....

  10. Pentaphylacaceae

    NARCIS (Netherlands)

    Steenis, van C.G.G.J.

    1955-01-01

    Evergreen, subglabrous shrubs or trees. Twigs lengthwise grooved and ridged. Buds perular. Leaves simple, entire, penninerved, spirally arranged; midrib and petiole sulcate. Stipules absent. Flowers bisexual, actinomorphic, rather small, in ± sessile, bracteate, axillary pseudo-spikes or -racemes wh

  11. Salvia carreyesii, Salvia ibugana and Salvia ramirezii (Lamiaceae), three new species from Jalisco, Mexico

    OpenAIRE

    Jesús Guadalupe González-Gallegos; José Antonio Vázquez-García; Miguel de Jesús Cházaro-Basáñez

    2013-01-01

    Three new species from Jalisco, Mexico, are described and illustrated. These species grow in tropical or in tropical and temperate transitional forests. The 3 species belong to Salvia L. subgenus Calosphace (Benth.) Benth. Salvia carreyesii J. G. González is morphologically similar with section Briquetia Epling. It is characterized by the contrasting vegetative morphology between mature and immature individuals, its relatively large and sessile or sub-sessile leaves (the uppermost amplexicaul...

  12. Salvia carreyesii, Salvia ibugana and Salvia ramirezii (Lamiaceae), three new species from Jalisco, Mexico Salvia carreyesii, Salvia ibugana y Salvia ramirezii (Lamiaceae), tres nuevas especies de Jalisco, México

    OpenAIRE

    Jesús Guadalupe González-Gallegos; José Antonio Vázquez-García; Miguel de Jesús Cházaro-Basáñez

    2013-01-01

    Three new species from Jalisco, Mexico, are described and illustrated. These species grow in tropical or in tropical and temperate transitional forests. The 3 species belong to Salvia L. subgenus Calosphace (Benth.) Benth. Salvia carreyesii J. G. González is morphologically similar with section Briquetia Epling. It is characterized by the contrasting vegetative morphology between mature and immature individuals, its relatively large and sessile or sub-sessile leaves (the uppermost amplexicaul...

  13. The identity of Prismatomeris subsessilis King & Gamble (Rubiaceae, Rubioideae)

    OpenAIRE

    Johansson, J.T.; Wong, K. M

    1988-01-01

    The genus Gentingia (Rubiaceae, Rubioideae) is described to accommodate the species G. subsessilis. It is a small tree or shrub with white, sessile or almost sessile, terminal flowers and glossy blackish, 1- or 2-seeded drupes, and is known only from submontane rain forests in NW. Peninsular Malaysia. It differs from the closely related genera Rennellia, Prismatomeris and Motleyia in the morphology of branches, stipules, inflorescence and calyx.

  14. Morphological characteristics and DNA sequence analysis of Petriella setifera and Oidiodendron setiferum from twigs of diseased oak

    OpenAIRE

    Hanna Kwaśna; Piotr Łakomy; Andrzej Łabędzki

    2014-01-01

    Examination of isolates of Petriella setifera and Oidiodendron setiferum revealed new diagnostic morphological charactcristics. Chlamydosporcs formed by P. setifera, isolated from twigs of sessile oak (Quercus petraea) showing symptoms of oak decline, are described for the first time. The first pictures of P. setifera anamorphs since the publication of its original description in 1912 are presented. Isolates of O. setiferum, from sessile oak twigs and from a log of Scots pine (Pinus sylvestri...

  15. A sclerite-bearing stem group entoproct from the early Cambrian and its implications

    OpenAIRE

    Zhifei Zhang; Holmer, Lars E.; Skovsted, Christian B; Glenn A. Brock; Graham E. Budd; Dongjing Fu; Xingliang Zhang; Degan Shu; Jian Han; Jianni Liu; Haizhou Wang; Aodhán Butler; Guoxiang Li

    2013-01-01

    The Lophotrochozoa includes disparate tentacle-bearing sessile protostome animals, which apparently appeared in the Cambrian explosion, but lack an uncontested fossil record. Here we describe abundant well preserved material of Cotyledion tylodes Luo et Hu, 1999, from the Cambrian (Series 2) Chengjiang deposits, reinterpreted here as a stem-group entoproct. The entoproct affinity is supported by the sessile body plan and interior soft anatomy. The body consists of an upper calyx and a lower e...

  16. Burkholderia cepacia complex in Serbian patients with cystic fibrosis: prevalence and molecular epidemiology.

    Science.gov (United States)

    Vasiljevic, Z V; Novovic, K; Kojic, M; Minic, P; Sovtic, A; Djukic, S; Jovcic, B

    2016-08-01

    The Burkholderia cepacia complex (Bcc) organisms remain significant pathogens in patients with cystic fibrosis (CF). This study was performed to evaluate the prevalence, epidemiological characteristics, and presence of molecular markers associated with virulence and transmissibility of the Bcc strains in the National CF Centre in Belgrade, Serbia. The Bcc isolates collected during the four-year study period (2010-2013) were further examined by 16 s rRNA gene, pulsed-field gel electrophoresis of genomic DNA, multilocus sequence typing analysis, and phylogenetic analysis based on concatenated sequence of seven alleles. Fifty out of 184 patients (27.2 %) were colonized with two Bcc species, B. cenocepacia (n = 49) and B. stabilis (n = 1). Thirty-four patients (18.5 %) had chronic colonization. Typing methods revealed a high level of similarity among Bcc isolates, indicating a person-to-person transmission or acquisition from a common source. New sequence types (STs) were identified, and none of the STs with an international distribution were found. One centre-specific ST, B. cenocepacia ST856, was highly dominant and shared by 48/50 (96 %) patients colonized by Bcc. This clone was characterized by PCR positivity for both the B. cepacia epidemic strain marker and cable pilin, and showed close genetic relatedness to the epidemic strain CZ1 (ST32). These results indicate that the impact of Bcc on airway colonization in the Serbian CF population is high and virtually exclusively limited to a single clone of B. cenocepacia. The presence of a highly transmissible clone and probable patient-to-patient spread was observed. PMID:27177755

  17. The use of nanoscale visible light-responsive photocatalyst TiO2-Pt for the elimination of soil-borne pathogens.

    Directory of Open Access Journals (Sweden)

    Ya-Lei Chen

    Full Text Available Exposure to the soil-borne pathogens Burkholderia pseudomallei and Burkholderia cenocepacia can lead to severe infections and even mortality. These pathogens exhibit a high resistance to antibiotic treatments. In addition, no licensed vaccine is currently available. A nanoscale platinum-containing titania photocatalyst (TiO(2-Pt has been shown to have a superior visible light-responsive photocatalytic ability to degrade chemical contaminants like nitrogen oxides. The antibacterial activity of the catalyst and its potential use in soil pathogen control were evaluated. Using the plating method, we found that TiO(2-Pt exerts superior antibacterial performance against Escherichia coli compared to other commercially available and laboratory prepared ultraviolet/visible light-responsive titania photocatalysts. TiO(2-Pt-mediated photocatalysis also affectively eliminates the soil-borne bacteria B. pseudomallei and B. cenocepacia. An air pouch infection mouse model further revealed that TiO(2-Pt-mediated photocatalysis could reduce the pathogenicity of both strains of bacteria. Unexpectedly, water containing up to 10% w/v dissolved soil particles did not reduce the antibacterial potency of TiO(2-Pt, suggesting that the TiO(2-Pt photocatalyst is suitable for use in soil-contaminated environments. The TiO(2-Pt photocatalyst exerted superior antibacterial activity against a broad spectrum of human pathogens, including B. pseudomallei and B. cenocepacia. Soil particles (<10% w/v did not significantly reduce the antibacterial activity of TiO(2-Pt in water. These findings suggest that the TiO(2-Pt photocatalyst may have potential applications in the development of bactericides for soil-borne pathogens.

  18. Dicty_cDB: Contig-U12414-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available osa strain LMG 189... 82 3e-14 EU240564_1( EU240564 |pid:none) Burkholderia vietnamiensis ...strain ... 82 3e-14 AY996914_1( AY996914 |pid:none) Burkholderia vietnamiensis st...eria cenocepacia strain FC... 82 3e-14 AY996913_1( AY996913 |pid:none) Burkholderia vietnamiensis strain ......um serovar 1... 82 3e-14 CP000614_3( CP000614 |pid:none) Burkholderia vietnam...240563_1( EU240563 |pid:none) Burkholderia vietnamiensis strain ... 82 3e-14 AB032577_1( AB032577 |pid:none)

  19. Susceptibility of Caenorhabditis elegans to Burkholderia infection depends on prior diet and secreted bacterial attractants.

    Directory of Open Access Journals (Sweden)

    Vaughn S Cooper

    Full Text Available The nematode Caenorhabditis elegans may be killed by certain pathogenic bacteria and thus is a model organism for studying interactions between bacteria and animal hosts. However, growing nematodes on prey bacteria may influence their susceptibility to potential pathogens. A method of axenic nematode culture was developed to isolate and quantify interactions between C. elegans and potentially pathogenic strains of the Burkholderia cepacia complex. Studying these dynamics in liquid solution rather than on agar surfaces minimized nematode avoidance behavior and resolved more differences among isolates. Most isolates of B. cenocepacia, B. ambifaria and B. cepacia caused 60-80% mortality of nematodes after 7 days, whereas isolates of B. multivorans caused less mortality (<25% and supported nematode reproduction. However, some B. cenocepacia isolates recovered from chronic infections were much less virulent (5-28% mortality. As predicted, prior diet altered the outcome of interactions between nematodes and bacteria. When given the choice between Burkholderia and E. coli as prey on agar, axenically raised nematodes initially preferred most lethal Burkholderia isolates to E. coli as a food source, but this was not the case for nematodes fed E. coli, which avoided toxic Burkholderia. This food preference was associated with the cell-free supernatant and thus secreted compounds likely mediated bacterial-nematode interactions. This model, which isolates interactions between bacteria and nematodes from the effects of prior feeding, demonstrates that bacteria can influence nematode behavior and their susceptibility to pathogens.

  20. Destruction of Opportunistic Pathogens via Polymer Nanoparticle-Mediated Release of Plant-Based Antimicrobial Payloads.

    Science.gov (United States)

    Amato, Dahlia N; Amato, Douglas V; Mavrodi, Olga V; Braasch, Dwaine A; Walley, Susan E; Douglas, Jessica R; Mavrodi, Dmitri V; Patton, Derek L

    2016-05-01

    The synthesis of antimicrobial thymol/carvacrol-loaded polythioether nanoparticles (NPs) via a one-pot, solvent-free miniemulsion thiol-ene photopolymerization process is reported. The active antimicrobial agents, thymol and carvacrol, are employed as "solvents" for the thiol-ene monomer phase in the miniemulsion to enable facile high capacity loading (≈50% w/w), excellent encapsulation efficiencies (>95%), and elimination of all postpolymerization purification processes. The NPs serve as high capacity reservoirs for slow-release and delivery of thymol/carvacrol-combination payloads that exhibit inhibitory and bactericidal activity (>99.9% kill efficiency at 24 h) against gram-positive and gram-negative bacteria, including both saprophytic (Bacillus subtilis ATCC 6633 and Escherichia coli ATCC 25922) and pathogenic species (E. coli ATCC 43895, Staphylococcus aureus RN6390, and Burkholderia cenocepacia K56-2). This report is among the first to demonstrate antimicrobial efficacy of essential oil-loaded nanoparticles against B. cenocepacia - an innately resistant opportunistic pathogen commonly associated with debilitating respiratory infections in cystic fibrosis. Although a model platform, these results point to promising pathways to particle-based delivery of plant-derived extracts for a range of antimicrobial applications, including active packaging materials, topical antiseptics, and innovative therapeutics. PMID:26946055

  1. Cis-2-dodecenoic acid signal modulates virulence of Pseudomonas aeruginosa through interference with quorum sensing systems and T3SS

    Science.gov (United States)

    2013-01-01

    Background Cis-2-dodecenoic acid (BDSF) is well known for its important functions in intraspecies signaling in Burkholderia cenocepacia. Previous work has also established an important role of BDSF in interspecies and inter-kingdom communications. It was identified that BDSF modulates virulence of Pseudomonas aeruginosa. However, how BDSF interferes with virulence of P. aeruginosa is still not clear. Results We report here that BDSF mediates the cross-talk between B. cenocepacia and P. aeruginosa through interference with quorum sensing (QS) systems and type III secretion system (T3SS) of P. aeruginosa. Bioassay results revealed that exogenous addition of BDSF not only reduced the transcriptional expression of the regulator encoding gene of QS systems, i.e., lasR, pqsR, and rhlR, but also simultaneously decreased the production of QS signals including 3-oxo-C12-HSL, Pseudomonas quinolone signal (PQS) and C4-HSL, consequently resulting in the down-regulation of biofilm formation and virulence factor production of P. aeruginosa. Furthermore, BDSF and some of its derivatives are also capable of inhibiting T3SS of P. aeruginosa at a micromolar level. Treatment with BDSF obviously reduced the virulence of P. aeruginosa in both HeLa cell and zebrafish infection models. Conclusions These results depict that BDSF modulates virulence of P. aeruginosa through interference with QS systems and T3SS. PMID:24134835

  2. Bacteria of the Burkholderia cepacia complex are cyanogenic under biofilm and colonial growth conditions

    Directory of Open Access Journals (Sweden)

    Hoshino Saiko

    2008-06-01

    Full Text Available Abstract Background The Burkholderia cepacia complex (Bcc is a collection of nine genotypically distinct but phenotypically similar species. They show wide ecological diversity and include species that are used for promoting plant growth and bio-control as well species that are opportunistic pathogens of vulnerable patients. Over recent years the Bcc have emerged as problematic pathogens of the CF lung. Pseudomonas aeruginosa is another important CF pathogen. It is able to synthesise hydrogen cyanide (HCN, a potent inhibitor of cellular respiration. We have recently shown that HCN production by P. aeruginosa may have a role in CF pathogenesis. This paper describes an investigation of the ability of bacteria of the Bcc to make HCN. Results The genome of Burkholderia cenocepacia has 3 putative HCN synthase encoding (hcnABC gene clusters. B. cenocepacia and all 9 species of the Bcc complex tested were able to make cyanide at comparable levels to P. aeruginosa, but only when grown surface attached as colonies or during biofilm growth on glass beads. In contrast to P. aeruginosa and other cyanogenic bacteria, cyanide was not detected during planktonic growth of Bcc strains. Conclusion All species in the Bcc are cyanogenic when grown as surface attached colonies or as biofilms.

  3. Modelling distribution of marine benthos from hydroacoustics and underwater video

    Science.gov (United States)

    Holmes, K. W.; Van Niel, K. P.; Radford, B.; Kendrick, G. A.; Grove, S. L.

    2008-08-01

    Broad-scale mapping of marine benthos is required for marine resource management and conservation. This study combines textural derivatives based on bathymetry from multibeam hydroacoustics with underwater video observations to model and map sessile biota between 10- and 60-m water depth over 35 km 2 in Point Addis Marine National Park (MNP), Vic., Australia. Classification tree models and maps were developed for macroalgae (all types, mixed red algae, Ecklonia, and rhodoliths) and sessile invertebrates (all types, sponges, and ascidians). Model accuracy was tested on 25% of the video observation dataset reserved from modelling. Models fit well for most macroalgae categories (correct classification rates of 67-84%), but are not as good for sessile invertebrate classes (correct classification rates of 57-62%). The poor fit of the sessile invertebrate models may be the combined result of grouping organisms with different environmental requirements and the effect of false absences recorded during video interpretation due to poor image quality. Probability maps, binary single-class maps, and multi-class maps supply spatially explicit, detailed information on the distribution of sessile benthic biota within the MNP and provide information at a landscape-scale for ecological investigations and marine management.

  4. Reinterpretation of histology of proximal colon polyps called hyperplastic in 2001

    Institute of Scientific and Technical Information of China (English)

    Omer Khalid; Sofyan Radaideh; Oscar W Cummings; Michael J O'Brien; John R Goldblum; Douglas K Rex

    2009-01-01

    AIM: To evaluate how proximal colon polyps interpreted as hyperplastic polyps in 2001 would be interpreted by expert pathologists in 2007. METHODS: Forty consecutive proximal colon polyps ≥ 5 mm in size, removed in 2001, and originally interpreted as hyperplastic polyps by general pathologists at Indiana University, were reviewed in 2007 by 3 GI pathologists. RESULTS: The gastrointestinal (GI) pathologists interpreted 85%, 43% and 30% of the polyps as sessile serrated polyps (sessile serrated adenomas). The overall Kappa was 0.16. When diagnoses were compared in pairs, Kappa values were 0.38 and 0.25 (fair agreement) and 0.14 (slight agreement). CONCLUSION: Many polyps interpreted as hyperplastic in 2001 were considered sessile serrated lesions by GI pathologists in 2007, but there is substantial inter-observer variation amongst GI pathologists.

  5. Spatial and temporal variability of mobile macro-invertebrate assemblages associated to coralligenous habitat

    Directory of Open Access Journals (Sweden)

    R. BEDINI

    2014-07-01

    Full Text Available The study aimed to investigate patterns of spatial and temporal variability of mobile macroinvertebrate assemblages associated to coralligenous habitat. A multi-factorial sampling design was used to test the hypotheses that the structure of assemblages and their spatial and temporal variability changed in relation to substrate inclination. Moreover, macroalgae and sessile macro-invertebrates were also investigated in order to detect eventual relationship between sessile and mobile assemblages. A total of 236 mobile macro-invertebrate taxa were identified, among them 2 Platyhelminthes, 4 Sipuncula, 6 Nemertea, 27 Mollusca, 86 Annelida, 103 Arthropoda, 8 Echinodermata. Results of the study showed that mobile macro-invertebrate assemblages of coralligenous habitat were little influenced by the inclination of substrate and by the morphology of sessile organisms, as patterns of variation were different between the two assemblages. Mobile macro-invertebrate assemblages changed among sampling dates within one year period and they showed high variability at the spatial scale examined.

  6. Antifungal susceptibility of Malassezia pachydermatis biofilm.

    Science.gov (United States)

    Figueredo, Luciana A; Cafarchia, Claudia; Otranto, Domenico

    2013-11-01

    Antifungal resistance has been associated with biofilm formation in many microorganisms, but not yet in Malassezia pachydermatis. This saprophytic yeast can cause otitis and dermatitis in dogs and has emerged as an important human pathogen, responsible for systemic infections in neonates in intensive care units. This study aims to evaluate the in vitro antifungal susceptibility of M. pachydermatis strains, in both their planktonic and sessile forms, to fluconazole, miconazole, ketoconazole, itraconazole, posaconazole, terbinafine and voriconazole using the XTT assay and Clinical and Laboratory Standards Institute (CLSI) microdilution method. The minimum inhibitory concentration (MIC) values recorded for each drug were significantly higher for sessile cells relative to planktonic cells to the extent that ≥ 90% of M. pachydermatis strains in their sessile form were classified as resistant to all antifungal agents tested. Data suggest that M. pachydermatis biofilm formation is associated with antifungal resistance, paving the way towards investigating drug resistance mechanisms in Malassezia spp. PMID:23834283

  7. Mitochondrial Electron Transport and Plant Stress

    DEFF Research Database (Denmark)

    Rasmusson, Allan G; Møller, Ian Max

    2011-01-01

    Due to the sessile nature of plants, it is crucial for their survival and growth that they can handle a constantly changing, and thus stressful, ambient environment by modifying their structure and metabolism. The central metabolism of plants is characterized by many alternative options for metab......Due to the sessile nature of plants, it is crucial for their survival and growth that they can handle a constantly changing, and thus stressful, ambient environment by modifying their structure and metabolism. The central metabolism of plants is characterized by many alternative options...

  8. Persistence in a single species CSTR model with suspended flocs and wall attached biofilms.

    Science.gov (United States)

    Mašić, Alma; Eberl, Hermann J

    2012-04-01

    We consider a mathematical model for a bacterial population in a continuously stirred tank reactor (CSTR) with wall attachment. This is a modification of the Freter model, in which we model the sessile bacteria as a microbial biofilm. Our analysis indicates that the results of the algebraically simpler original Freter model largely carry over. In a computational simulation study, we find that the vast majority of bacteria in the reactor will eventually be sessile. However, we also find that suspended biomass is relatively more efficient in removing substrate from the reactor than biofilm bacteria.

  9. Wetting of soap bubbles on hydrophilic, hydrophobic and superhydrophobic surfaces

    CERN Document Server

    Arscott, Steve

    2013-01-01

    Wetting of sessile bubbles on solid and liquid surfaces has been studied. A model is presented for the contact angle of a sessile bubble based on a modified Young equation - the experimental results agree with the model. A hydrophilic surface results in a bubble contact angle of 90 deg whereas on a superhydrophobic surface one observes 134 deg. For hydrophilic surfaces, the bubble angle diminishes with bubble radius - whereas on a superhydrophobic surface, the bubble angle increases. The size of the Plateau borders governs the bubble contact angle - depending on the wetting of the surface.

  10. Dicty_cDB: Contig-U13423-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available AAC00-1, co... 37 1.1 CP000615_1134( CP000615 |pid:none) Burkholderia vietnamiensis G4 ...36 2.5 CP000447_2805( CP000447 |pid:none) Shewanella frigidimarina NCIMB ... 36 2.5 AM445006_1( AM445006 |pid:none) Vitis vin...none) Burkholderia cenocepacia MC0-3 c... 36 2.5 AL939108_142( AL939108 |pid:none) Streptomyces coelicolor A3(2) co...... 46 3.2 1 >( BJ432551 ) Dictyostelium discoideum cDNA clone:ddv19d02, 3' end, single read. Length = 747 Sco...se [ubiquinone] 1 alpha s... 712 0.0 AC115607_16( AC115607 |pid:none) Dictyostelium discoid

  11. Dicty_cDB: Contig-U03623-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available 70( CP000379 |pid:none) Burkholderia cenocepacia AU 105... 51 2e-05 CP000615_618( CP000615 |pid:none) Burkholderia vietnam...1616_2983( CP001616 |pid:none) Tolumonas auensis DSM 9187, com... 47 3e-04 CP000614_1652( CP000614 |pid:none) Burkholderia vietnam...966436 |pid:none) Zea mays clone 294518 unknown mRNA. 47 4e-04 CP000615_235( CP000615 |pid:none) Burkholderia vietnam...d:none) Yersinia enterocolitica subsp. ... 43 0.006 CP000448_2172( CP000448 |pid:none) Syntrophomonas wolfei... 0.004 CU928163_3973( CU928163 |pid:none) Escherichia coli UMN026 chromos... 44 0.004 T24115( T24115 ) hypothetic

  12. Pore-forming pyocin S5 utilizes the FptA ferripyochelin receptor to kill Pseudomonas aeruginosa.

    Science.gov (United States)

    Elfarash, Ameer; Dingemans, Jozef; Ye, Lumeng; Hassan, Ahmed Amir; Craggs, Michael; Reimmann, Cornelia; Thomas, Mark S; Cornelis, Pierre

    2014-02-01

    Pyocins are toxic proteins produced by some strains of Pseudomonas aeruginosa that are lethal for related strains of the same species. Some soluble pyocins (S2, S3 and S4) were previously shown to use the pyoverdine siderophore receptors to enter the cell. The P. aeruginosa PAO1 pore-forming pyocin S5 encoding gene (PAO985) was cloned into the expression vector pET15b, and the affinity-purified protein product tested for its killing activity against different P. aeruginosa strains. The results, however, did not show any correlation with a specific ferripyoverdine receptor. To further identify the S5 receptor, transposon mutants were generated. Pooled mutants were exposed to pyocin S5 and the resistant colonies growing in the killing zone were selected. The majority of S5-resistant mutants had an insertion in the fptA gene encoding the receptor for the siderophore pyochelin. Complementation of an fptA transposon mutant with the P. aeruginosa fptA gene in trans restored the sensitivity to S5. In order to define the receptor-binding domain of pyocin S5, two hybrid pyocins were constructed containing different regions from pyocin S5 fused to the C-terminal translocation and DNase killing domains of pyocin S2. Only the protein containing amino acid residues 151 to 300 from S5 showed toxicity, indicating that the pyocin S5 receptor-binding domain is not at the N-terminus of the protein as in other S-type pyocins. Pyocin S5 was, however, unable to kill Burkholderia cenocepacia strains producing a ferripyochelin FptA receptor, nor was the B. cenocepacia fptA gene able to restore the sensitivity of the resistant fptA mutant P. aeruginosa strain.

  13. Efflux Pump-mediated Drug Resistance in Burkholderia

    Directory of Open Access Journals (Sweden)

    Nicole L Podnecky

    2015-04-01

    Full Text Available Several members of the genus Burkholderia are prominent pathogens. Infections caused by these bacteria are difficult to treat because of significant antibiotic resistance. Virtually all Burkholderia species are also resistant to polymyxin, prohibiting use of drugs like colistin that are available for treatment of infections caused by most other drug resistant Gram-negative bacteria. Despite clinical significance and antibiotic resistance of Burkholderia species, characterization of efflux pumps lags behind other non-enteric Gram-negative pathogens such as Acinetobacter baumannii and Pseudomonas aeruginosa. Although efflux pumps have been described in several Burkholderia species, they have been best studied in B. cenocepacia and B. pseudomallei. As in other non-enteric Gram-negatives, efflux pumps of the resistance nodulation cell division (RND family are the clinically most significant efflux systems in these two species. Several efflux pumps were described in B. cenocepacia, which when expressed confer resistance to clinically significant antibiotics, including aminoglycosides, chloramphenicol, fluoroquinolones, and tetracyclines. Three RND pumps have been characterized in B. pseudomallei, two of which confer either intrinsic or acquired resistance to aminoglycosides, macrolides, chloramphenicol, fluoroquinolones, tetracyclines, trimethoprim, and in some instances trimethoprim+sulfamethoxazole. Several strains of the host-adapted B. mallei, a clone of B. pseudomallei, lack AmrAB-OprA and are therefore aminoglycoside and macrolide susceptible. B. thailandensis is closely related to B. pseudomallei, but non-pathogenic to humans. Its pump repertoire and ensuing drug resistance profile parallels that of B. pseudomallei. An efflux pump in B. vietnamiensis plays a significant role in acquired aminoglycoside resistance. Summarily, efflux pumps are significant players in Burkholderia drug resistance.

  14. Dynamics of Somatic Cell-Lineage Competition in Chimeras of Hydractinia symbiolongicarpus (Cnidaria: Hydrozoa) Dinámica de competencia entre líneas celulares somáticas en quimeras de Hydractinia symbiolongicarpus (Cnidaria: Hydrozoa)

    OpenAIRE

    RYAN S SCHWARZ; Cadavid, Luis F.

    2007-01-01

    Sessile colonial invertebrates often fuse with conspecifics to form chimeras. Chimerism represents an unequivocal instance of withinindividual selection where genetically different celllineages compete for representation in the somatic and gametic pools. We analyzed temporal and spatial variations in somatic celllineage composition of laboratoryestablished chimeras of the hydroid Hydractinia symbiolongicarpus (Cnidaria: Hydrozoa). Using three clones with different allotyp...

  15. A new species of Symplocos (Symplocaceae) from southern Ecuador.

    Science.gov (United States)

    Ulloa Ulloa, Carmen; Ståhl, Bertil; Minga, Danilo; Ansaloni, Raffaella

    2015-01-01

    A new species from Ecuador, Symplocos limonensis, is here described and illustrated. It resembles Symplocos clethrifolia but differs by having larger leaves with evident (i.e., not concealed) areoles on lower surface, sessile inflorescences, smaller white corollas, and fewer stamens. The species is only known from three collections in the Andean forests of Morona-Santiago Province in southern Ecuador.

  16. Ex situ cultivation of the soft coral Sinularia flexibilis for biotechnological exploration

    NARCIS (Netherlands)

    Khalesi, M.K.

    2008-01-01

    Many of the marine sessile invertebrates such as soft corals produce toxins that help protect the coral from competitors and predators. These toxins are of medical importance (e.g. in cancer treatment). In recent years, there has been a focus to make use of marine organisms for this purpose. As a re

  17. MORPHOLOGICAL AND ANATOMICAL STUDY OF SHOOTS OF JUNIPERUS COMMUNIS L. FROM CUPRESSACEAE FAMILY

    Directory of Open Access Journals (Sweden)

    F. K. Serebryanaya

    2015-01-01

    Full Text Available We have conducted morphological and anatomical studies of Juniperus communis, revealed diagnostic indices of the stamina, stalk, and needle. The leaf is sessile, linear awe shaped, pointed. Stalk form at cross section is cylindrical. Needles are lanceolar with one whitish vertical stripe, with paracytic stomata. 

  18. Metamorphosis in balanomorphan, pedunculated, and parasitic barnacles

    DEFF Research Database (Denmark)

    Høeg, Jens Thorvald; Maruzzo, Diego; Okano, Keiju;

    2012-01-01

    Cypris metamorphosis was followed using video microscopy in four species of cirripeds representing the suspension-feeding pedunculated and sessile Thoracica and the parasitic Rhizocephala. Cirripede metamorphosis involves one or more highly complex molts that mark the change from a free cypris...

  19. Current-driven Flow across a Stationary Jellyfish

    CERN Document Server

    Hamlet, Christina; Fan, Roger; Dollinger, Makani; Harenber, Steve

    2011-01-01

    We present several dye visualization and numerical simulation fluid dynamics videos of a sessile jellyfish subjected to channel flow. The low resolution video and the high resolution video display the vortex patterns in different channel flows. This description accompanies the video submission V038 to the 2011 APS DFD Gallery of Fluid Motion.

  20. A new species of Freycinetia Gaudich (Pandanaceae from West Kalimantan, Indonesia

    Directory of Open Access Journals (Sweden)

    Fitri Sri Rizki

    2015-09-01

    Full Text Available A new species Freycinetia sessiliflora Rizki & Rugayah is described and illustrated based on specimen character from Mount Nyiut-Sambas, West Kalimantan (Indonesia. The species is differed from others by having sessile pedicellus, concave cylindrical of inner bracts and bright red bracts.

  1. Increased polyp detection using narrow band imaging compared with high resolution endoscopy in patients with hyperplastic polyposis syndrome

    NARCIS (Netherlands)

    K.S. Boparai; F.J.C. van den Broek; S. van Eeden; P. Fockens; E. Dekker

    2011-01-01

    Hyperplastic polyposis syndrome (HPS) is associated with colorectal cancer and is characterized by multiple hyperplastic polyps, sessile serrated adenomas (SSAs) and adenomas. Narrow band imaging (NBI) may improve the detection of polyps in HPS. We aimed to compare polyp miss rates with NBI with tho

  2. Jamming bacterial communications: new strategies to combat bacterial infections and the development of biofilms

    DEFF Research Database (Denmark)

    Givskov, Michael Christian; Hentzer, Morten

    2006-01-01

    with surfaces and we as scientists must therefore turn our attention to this sessile mode of growth (33). It appears that the ability to form surface-associated, structured and cooperative consortia (referred to as biofilms) is one of the most remarkable and ubiquitous characteristics of bacteria (12...

  3. The ATAF1 transcription factor: At the convergence point of ABA-dependent plant defense against biotic and abiotic stresses

    Institute of Scientific and Technical Information of China (English)

    Brigitte Mauch-Mani; Victor Flors

    2009-01-01

    @@ Because of their sessile lifestyle, plants have evolved sophisticated ways of coping with the various biotic and abiotic stresses they can encounter during their life. Their defensive reac-tions to a given stress have to be rapid and well adapted to the situation. They are the results of tightly coordinated changes at the molecular level involving the contributions of different signaling pathways.

  4. Influence of ionic strength and substratum hydrophobicity on the co-adhesion of oral microbial pairs

    NARCIS (Netherlands)

    vanderMei, HC; Busscher, HJ; Bos, R.R.M.

    1996-01-01

    Co-adhesion between oral microbial pairs (i.e. adhesion of a planktonic micro-organism, University of organism to a sessile organism adhering to a substratum surface) has been described as a highly specific interaction, mediated by stereochemical groups on the interacting microbial cell surfaces, an

  5. Influence of temperature on the co-adhesion of oral microbial pairs in saliva

    NARCIS (Netherlands)

    vanderMei, HC; Busscher, HJ; Bos, R.R.M.

    1996-01-01

    Coaggregation (interactions between two planktonic microorganisms) and co-adhesion (interactions between sessile and planktonic microorganisms) are believed to be important factors in the formation of dental plaque by many investigators, although others doubt whether coaggregation and co-adhesion oc

  6. A QUANTITATIVE METHOD TO STUDY CO-ADHESION OF MICROORGANISMS IN A PARALLEL-PLATE FLOW CHAMBER .2. ANALYSIS OF THE KINETICS OF CO-ADHESION

    NARCIS (Netherlands)

    VANDERMEI, HC; BUSSCHER, HJ; Bos, R.R.M.

    1995-01-01

    Recently (J. Microbiological Methods 20, 289-305, 1994), it was suggested that dental plaque formation involved both interspecies binding between planktonic microorganisms ('coaggregation') as well as between planktonic and sessile microorganisms ('co-adhesion') and that co-adhesion could be measure

  7. Sucrose controlled translation mediated by a sequence conserved peptide in Arabidopsis thaliana

    NARCIS (Netherlands)

    Lastdrager, Jeroen

    2015-01-01

    The sessile nature of plants demands adaptation to a variety of external stimuli. Sugars have well established roles in steering growth and developmental processes, and sugar levels are a good proxy for the energy status in plants. Molecular sugar signaling networks perceive the availability of suga

  8. Multiple salivary mucoceles in a young boy.

    Science.gov (United States)

    Porter, S R; Scully, C; Kainth, B; Ward-Booth, P

    1998-06-01

    A rare case of multiple mucoceles in a 4-year-old boy is reported. The patients presented with multiple sessile swellings on his lower lip, with no obvious local aetiology. The patient was otherwise well. The lesions were excised surgically and histopathological examination confirmed the lesions to be extravasation-type mucoceles. The article includes a brief review of mucoceles. PMID:9728101

  9. Global gene expression in Escherichia coli biofilms

    DEFF Research Database (Denmark)

    Schembri, Mark; Kjærgaard, K.; Klemm, Per

    2003-01-01

    to antimicrobial treatments and host immune defence responses. Escherichia coli has been used as a model organism to study the mechanisms of growth within adhered communities. In this study, we use DNA microarray technology to examine the global gene expression profile of E. coli during sessile growth compared...

  10. Over-expression of Arabidopsis AtCHR23 chromatin remodeling ATPase results in increased variability of growth and gene expression

    NARCIS (Netherlands)

    Folta, A.; Severing, E.I.; Krauskopf, J.; Geest, van de H.C.; Verver, J.; Nap, J.P.H.; Mlynarova, L.

    2014-01-01

    Background Plants are sessile organisms that deal with their -sometimes adverse- environment in well-regulated ways. Chromatin remodeling involving SWI/SNF2-type ATPases is thought to be an important epigenetic mechanism for the regulation of gene expression in different developmental programs and f

  11. Diversity and abundance of epibiota on invasive and native estuarine gastropods depend on substratum and salinity

    DEFF Research Database (Denmark)

    Thyrring, Jakob; Thomsen, Mads Solgaard; Brunbjerg, Ane Kirstine;

    2015-01-01

    Epibiosis is a common life form in estuarine ecosystems, where shell structures in particular, provide important attachment substrate for sessile species. Many studies have quantified variation in epibiota communities against a few environmental factors, but rarely studies have accounted for the ...

  12. Batidaceae

    NARCIS (Netherlands)

    Royen, van P.

    1955-01-01

    Dioecious or monoecious small shrubs with thick woody roots. Leaves simple, opposite, sessile, fleshy, with a distinctly saccate, colourless base. Stipules minute. Flowers unisexual, either solitary and terminal or axillary, or in small axillary spikes. ♂ Flowers subtended by bracts, enclosed in a m

  13. Cosmic Pessimism

    Directory of Open Access Journals (Sweden)

    Eugene Thacker

    2012-08-01

    Full Text Available The author of After Life (University of Chicago Press presents a series of aphorisms exploring pessimism's motility and its sessility. "A long, low funereal sigh" opens the reader onto an abrupt anatomical study of pessimism, its moral and metaphysical considerations and music. Songs of spite, of futility, of sleep, of doom and further mournful voices resound.

  14. Effects of varying oxygen partial pressure on molten silicon-ceramic substrate interactions

    Science.gov (United States)

    Ownby, D. P.; Barsoum, M. W.

    1980-01-01

    The silicon sessile drop contact angle was measured on hot pressed silicon nitride, silicon nitride coated on hot pressed silicon nitride, silicon carbon coated on graphite, and on Sialon to determine the degree to which silicon wets these substances. The post-sessile drop experiment samples were sectioned and photomicrographs were taken of the silicon-substrate interface to observe the degree of surface dissolution and degradation. Of these materials, silicon did not form a true sessile drop on the SiC on graphite due to infiltration of the silicon through the SiC coating, nor on the Sialon due to the formation of a more-or-less rigid coating on the liquid silicon. The most wetting was obtained on the coated Si3N4 with a value of 42 deg. The oxygen concentrations in a silicon ribbon furnace and in a sessile drop furnace were measured using the protable thoria-yttria solid solution electrolyte oxygen sensor. Oxygen partial pressures of 10 to the minus 7 power atm and 10 to the minus 8 power atm were obtained at the two facilities. These measurements are believed to represent nonequilibrium conditions.

  15. Severe disseminated phaeohyphomycosis in an immunocompetent patient caused by Veronaea botryosa

    NARCIS (Netherlands)

    A. Bonifaz; M.M. Davoudi; G.S. de Hoog; C. Padilla-Desgarennes; D. Vázquez-González; G. Navarrete; J.F. Meis; H. Badali

    2013-01-01

    We present a severe case of disseminated phaeohyphomycosis due to Veronaea botryosa. A 32-year-old female, native from Cuautla, Morelos, Mexico, presented a chronic dermatosis which started 10 years earlier with multiple exophytic, multilobulated, soft, and pedunculated or sessile neoformations of d

  16. Hydrocharitaceae

    NARCIS (Netherlands)

    Hartog, den C.

    1955-01-01

    Annual or perennial freshwater and marine plants. Leaves submerged, rarely floating or partly emerged, radical or arranged along a stem, spirally whorled, distichous, or in pairs, linear, lanceolate, elliptic, ovate or orbicular, sessile or petioled; petioles mostly sheathing; nerves more or less pa

  17. Hydrophobicity of peritoneal tissues in the rat

    NARCIS (Netherlands)

    Gomez-Suarez, C; Bruinsma, GM; Rakhorst, G; van der Mei, HC; Busscher, HJ

    2002-01-01

    In this study, an inventory of the hydrophobicity of peritoneal tissues in the living rat was made. Peritoneal tissues were divided into mesentery (i.e., omentum) and parietal and visceral peritoneum and their hydrophobicity was determined by the sessile drop method. All peritoneal tissues were hydr

  18. Collective and convective effects compete in patterns of dissolving surface droplets

    NARCIS (Netherlands)

    Laghezaa, G.; Dietrich, E.; Yeomans, J.M.; Ledesma-Aguilar, R.A.; Kooij, E.S.; Zandvliet, H.J.W.; Lohse, D.

    2016-01-01

    The effects of neighboring droplets on the dissolution of a sessile droplet, i.e. collective effects, are investigated both experimentally and numerically. On the experimental side small approximately 20 nL mono-disperse surface droplets arranged in an ordered pattern were dissolved and their size e

  19. Pseudomonas aeruginosa and Saccharomyces cerevisiae Biofilm in Flow Cells

    DEFF Research Database (Denmark)

    Weiss Nielsen, Martin; Sternberg, Claus; Molin, Søren;

    2011-01-01

    Many microbial cells have the ability to form sessile microbial communities defined as biofilms that have altered physiological and pathological properties compared to free living microorganisms. Biofilms in nature are often difficult to investigate and reside under poorly defined conditions(1). ...

  20. Salt stains from evaporating droplets

    NARCIS (Netherlands)

    N. Shahidzadeh; M.F.L. Schut; J. Desarnaud; M. Prat; D. Bonn

    2015-01-01

    The study of the behavior of sessile droplets on solid substrates is not only associated with common everyday phenomena, such as the coffee stain effect, limescale deposits on our bathroom walls, but also very important in many applications such as purification of pharmaceuticals, deicing of airplan

  1. Biofilm formation and antibiotic production in Ruegeria mobilis are influenced by intracellular concentrations of cyclic dimeric guanosinmonophosphate

    DEFF Research Database (Denmark)

    D'Alvise, Paul; Magdenoska, Olivera; Melchiorsen, Jette;

    2014-01-01

    species Ruegeria mobilis are associated with intracellular concentrations of the signal compound cyclic dimeric guanosinmonophosphate (c-di-GMP), which in bacteria regulates transitions between motile and sessile life stages. Genes for diguanylate cyclases and phosphodiesterases, which are involved in c...

  2. The non-hierarchical, non-uniformly branching topology of a leuconoid sponge aquiferous system revealed by 3D reconstruction and morphometrics using corrosion casting and X-ray microtomography

    NARCIS (Netherlands)

    J.U. Hammel; M.V. Filatov; J. Herzen; F. Beckmann; J.A. Kaandorp; M. Nickel

    2011-01-01

    As sessile filter feeders, sponges rely on a highly efficient fluid transport system. Their physiology depends on efficient water exchange, which is performed by the aquiferous system. This prominent poriferan anatomical character represents a dense network of incurrent and excurrent canals on which

  3. Root and nodule : lateral organ development in N2-fixing plants

    NARCIS (Netherlands)

    Xiao, T.T.

    2015-01-01

    Plants are sessile organisms. This characteristic severely limits their ability of approaching nutrients. To cope with this issue, plants evolved endosymbiotic relationships with soil fungi to extend their interface with surrounding environment. In case of arbuscular mycorrhizae (AM) fungi this occu

  4. Implications of bacterial biofilms in chronic rhinosinusitis

    Directory of Open Access Journals (Sweden)

    Edwin Tamashiro

    2009-06-01

    Full Text Available The recognition of sessile form of bacteria with particular features, known as biofilm, has given new insights to the understanding of pathogenesis of several chronic diseases, including Chronic Rhinosinusitis (CRS. In this article we review the main characteristics of biofilms, describe the current methods used to demonstrate biofilms in chronic rhinosinusitis and discuss the future directions of research in the field.

  5. Plant AGC protein kinases orient auxin-mediated differential growth and organogenesis

    NARCIS (Netherlands)

    Galván Ampudia, Carlos Samuel

    2009-01-01

    In view of their predominant sessile lifestyle, plants need to be able to adapt to changes in their environment. Environmental signals such as light and gravity modulate plant growth and architecture by redirecting polar cell-to-cell transport of auxin, thus causing changes in the distribution of th

  6. Species richness and diversity in different functional groups across environmental stress gradients : a model for marine rocky shores

    NARCIS (Netherlands)

    Scrosati, Ricardo A.; van Genne, Barbara; Heaven, Christine S.; Watt, Cortney A.

    2011-01-01

    We present a model predicting how the species richness and diversity within benthic functional groups should vary across the full environmental stress gradient across which a regional biota from marine rocky shores can occur. Built upon previous models, our model makes predictions for sessile specie

  7. Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi

    NARCIS (Netherlands)

    Hacquard, Stéphane; Kracher, Barbara; Hiruma, Kei; Münch, Philipp C; Garrido-Oter, Ruben; Thon, Michael R; Weimann, Aaron; Damm, U.; Dallery, Jean-Félix; Hainaut, Matthieu; Henrissat, Bernard; Lespinet, Olivier; Sacristán, Soledad; Ver Loren van Themaat, Emiel; Kemen, Eric; McHardy, Alice C; Schulze-Lefert, Paul; O'Connell, Richard J

    2016-01-01

    The sessile nature of plants forced them to evolve mechanisms to prioritize their responses to simultaneous stresses, including colonization by microbes or nutrient starvation. Here, we compare the genomes of a beneficial root endophyte, Colletotrichum tofieldiae and its pathogenic relative C. incan

  8. A simple method for measuring the superhydrophobic contact angle with high accuracy

    International Nuclear Information System (INIS)

    A modified selected-plane method for contact angle (θ) measurement is proposed in this study that avoids the difficulty of finding the real contact point and image-distortion effects adjacent to the contact point. This method is particularly suitable for superhydrophobic surfaces. The sessile-drop method coupled with the tangent line is the most popular method to find the contact angle in literature, but it entails unavoidable errors in determining the air-solid base line due to the smoothness problem and substrate tilting. In addition, the tangent-line technique requires finding the actual contact point. The measurement error due to the base line problem becomes more profound for superhydrophobic surfaces. A larger θ deviation results from a more superhydrophobic surface with a fixed base line error. The proposed modified selected-plane method requires only four data points (droplet apex, droplet height, and two interfacial loci close to the air-solid interface), avoiding the problem of the sessile-drop-tangent method in finding the contact point and saving the trouble of the sessile-drop-fitting method for best fitting of the numerous edge points with the theoretical profile. A careful error analysis was performed, and a user-friendly program was provided in this work. This method resulted in an accurate θ measurement and a method that was much improved over the classical selected plane and the sessile-drop-tangent methods. The θ difference between this method and the sessile-drop-fitting method was found to be less than three degrees.

  9. Serrated neoplasia of the colorectum

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Serrated polyps of the colorectum form a group of related lesions which include aberrant crypt foci (ACF),conventional hyperplastic polyps, mixed (admixed)polyps, serrated adenomas and sessile serrated adenomas. In recent years the molecular differences between these morphologically similar lesions have been highlighted, and their differing biological potential has been realised. In particular, the sessile serrated adenoma has become recognised as the precursor lesion to a group of sporadic colorectal carcinomas characterised by morphological and molecular features distinct from conventional adenomas. These recent findings have challenged the long held paradigm that all colorectal carcinomas arise via the traditional adenoma-carcinoma sequence. In addition, they present a major challenge for the early detection and management of colorectal cancer, which is no longer regarded as a homogeneous entity.

  10. Flagella-induced transitions in the collective behavior of confined microswimmers

    CERN Document Server

    Tsang, Alan Cheng Hou

    2014-01-01

    Bacteria exist in a free-swimming state or in a sessile biofilm state. The transition from free-swimming to sessile mode is characterized by changes in gene expression which alter, among others,the mechanics of flagellar motility. In this paper, we propose an idealized physical model to investigate the effects of flagellar activity on the hydrodynamic interactions among a population of microswimmers. We show that decreasing flagellar activity induces a hydrodynamically-triggered transition in confined microswimmers from turbulent-like swimming to aggregation and clustering. These results suggest that the interplay between flagellar activity and hydrodynamic interactions provides a physical mechanism for coordinating collective behaviors in confined bacteria, with potentially profound implications on biofilm initiation.

  11. A New Ichnogenus Kailidiscus Produced by Attachment from the Middle Cambrian Kaili Formation in Taijiang, Guizhou Province, China

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Over 190 specimens of an attachment ichnofossil Kailidiscus (n. ichnogen.) have been found in the Kaili Bitoa, a Burgess Shale-type biota, from the middle Kaili Formation (early Middle Cambrian) in Taijiang County, Guizhou Province, southern China. Kailidiscus is an epichnia with a circular to oval attachment platform, on which there is a carbonaceous film probably formed by the body of the living organism. Structures such as a marginal furrow, an inner and outer marginal ride, many convex fold-ridges, and a large caved peripheral furrow on the attachment platform may be the result of basal tissues of a sessile organism that wrinkled to increase the attachment's surface area. The Kailidiscus organism may have been a sessile cnidarian attached to the muddy seafloor. Kailidiscus organisms lived in relatively quiet water,and were buried by a sudden influx of sediment.

  12. Development and essential oil content of secretory glands of sage (Salvia officinalis)

    Energy Technology Data Exchange (ETDEWEB)

    Venkatachalam, K.V.; Kjonaas, R.; Croteau, R.

    1984-09-01

    Scanning electron microscopy of sage (Salvia officinalis L.) leave confirmed the presence of two basic types of glandular trichomes consisting of a capitate stalked form containing a multicellular stalk and surmounted by a unicellular secretory head, and a capitate sessile form containing a unicellular stalk and unicellular, or multicellular, secretory head. In the latter type, secretory activity and filling of the subcuticular cavity may begin at virtually any stage of the division cycle affording fully developed glands containing from one to twelve cells in the secretory head. Gas liquid chromatographic analysis of the oil content of the most numerous gland species (capitate stalked, capitate sessile with one and with eight secretory cells) indicated only minor quantitative differences in essential oil composition. Thus, each gland type is capable of producing the four major monoterpene families (p-menthanes, pinanes, bornanes and thujanes) characteristic of sage. 21 references, 2 figures.

  13. The expanding roles of c-di-GMP in the biosynthesis of exopolysaccharides and secondary metabolites.

    Science.gov (United States)

    Liang, Zhao-Xun

    2015-05-01

    The cyclic dinucleotide c-di-GMP has emerged in the last decade as a prevalent intracellular messenger that orchestrates the transition between the motile and sessile lifestyles of many bacterial species. The motile-to-sessile transition is often associated with the formation of extracellular matrix-encased biofilm, an organized community of bacterial cells that often contributes to antibiotic resistance and host-pathogen interaction. It is increasingly clear that c-di-GMP controls motility, biofilm formation and bacterial pathogenicity partially through regulating the production of exopolysaccharides (EPS) and small-molecule secondary metabolites. This review summarizes our current understanding of the regulation of EPS biosynthesis by c-di-GMP in a diversity of bacterial species and highlights the emerging role of c-di-GMP in the biosynthesis of small-molecule secondary metabolites.

  14. Role of particle shape anisotropy on crack formation in drying of colloidal suspension

    Science.gov (United States)

    Dugyala, Venkateshwar Rao; Lama, Hisay; Satapathy, Dillip K.; Basavaraj, Madivala G.

    2016-08-01

    Cracks in a colloidal film formed by evaporation induced drying can be controlled by changing drying conditions. We show, for the first time that the crack morphologies in colloidal films are dependent on shape of constituting particles apart from the microstructure and particle assembly. In order to investigate the particle shape effect on crack patterns, monodispered spherical and ellipsoidal particles are used in sessile drop experiments. On observing the dried sessile drop we found cracks along the radial direction for spherical particle dispersions and circular crack patterns for ellipsoidal particle dispersions. The change in crack pattern is a result of self assembly of shape anisotropic particles and their ordering. The ordering of particles dictate the crack direction and the cracks follow the path of least resistance to release the excess stress stored in the particle film. Ellipsoids having different aspect ratio (~3 to 7) are used and circular crack patterns are repeatedly observed in all experiments.

  15. Microbial consortium influence upon steel corrosion rate, using the electrochemical impedance spectroscopy technique

    Energy Technology Data Exchange (ETDEWEB)

    Hernandez-Gayosso, M.J.; Ruiz-Ordaz, N. [Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional. Prolongacion de Carpio y Plan de Ayala, Mexico, D.F, C.P. 11340 (Mexico); Zavala-Olivares, G.; Garcia-Esquivel, R. [Instituto Mexicano del Petroleo, Grupo de Corrosion. Eje Central Lazaro Cardenas 152, Col. San Bartolo Atepehuacan, Mexico, D.F, C.P. 07730 (Mexico); Mora-Mendoza, J.L. [Petroleos Mexicanos, Marina Nacional 329, B-1, piso 8, Colonia Huasteca, CP 11311, Mexico, D.F. (Mexico)

    2004-09-01

    The Electrochemical Impedance Technique was used to evaluate the influence of a microbial consortium, isolated from a gas pipeline, upon API XL52 steel corrosion rate. The bacteria growth exhibited two different kinetics behavior, one for the planktonic and the other for the sessile phase. The sessile bacteria were found to be the main responsible for the corrosion rate increment observed during the experiments and no relationship between the planktonic microorganisms and the corrosion rate increment was found. The diagrams obtained from the electrochemical impedance measurements, indicated a biofilm formation and that the system changed from activation to diffusion control. Although the system was under diffusion control, an increment on the corrosion rate was detected, and a localized corrosion process was induced. The results were complemented with some surface analysis using Scanning Electron Microscopy. (Abstract Copyright [2004], Wiley Periodicals, Inc.)

  16. Wetting property of smooth and textured hydrophobic surfaces under condensation condition

    Science.gov (United States)

    Hao, PengFei; Lv, CunJing; Yao, ZhaoHui; Niu, FengLei

    2014-11-01

    Static and dynamic wetting behaviors of sessile droplet on smooth, microstructured and micro/nanostructured surface under condensation condition are systematically studied. In contrast to the conventional droplet wetting on such natural materials by dropping, we demonstrate here that when dropwise condensation occurs, the sessile droplet will transit from the Cassie-Baxter wetting state to the Wenzel wetting state or partial Cassie-Baxter wetting state on the microstructured surface or the micro/nanostructured surface, which leads to a strong adhesion between the droplet and the substrate. In contrast, the apparent contact angle and the sliding angle on the smooth surface changes a little before and after the condensation because of small roughness. Theoretical analysis shows that the roughness factor controls the adhesion force of the droplet during condensation, and a theoretical model is constructed which will be helpful for us to understand the relationship between the adhesion force and the geometry of the surface.

  17. Numerical study of droplet dynamics in a polymer electrolyte fuel cell gas channel using an embedded Eulerian-Lagrangian approach

    Science.gov (United States)

    Jarauta, Alex; Ryzhakov, Pavel; Secanell, Marc; Waghmare, Prashant R.; Pons-Prats, Jordi

    2016-08-01

    An embedded Eulerian-Lagrangian formulation for the simulation of droplet dynamics within a polymer electrolyte fuel cell (PEFC) channel is presented. Air is modeled using an Eulerian formulation, whereas water is described with a Lagrangian framework. Using this framework, the gas-liquid interface can be accurately identified. The surface tension force is computed using the curvature defined by the boundary of the Lagrangian mesh. The method naturally accounts for material property changes across the interface and accurately represents the pressure discontinuity. A sessile drop in a horizontal surface, a sessile drop in an inclined plane and droplets in a PEFC channel are solved for as numerical examples and compared to experimental data. Numerical results are in excellent agreement with experimental data. Numerical results are also compared to results obtained with the semi-analytical model previously developed by the authors in order to discuss the limitations of the semi-analytical approach.

  18. Study on the actives sludge present in the La Golondrina's WWTP; Caracterizacion del fango activo presente en el tratamiento biologico de la EDAR de La Golondrina

    Energy Technology Data Exchange (ETDEWEB)

    Marin Galvin, R.; Rojas Moreno, J.

    2010-07-01

    Active sludge on the La Golondrina's WWTP (Emacsa-Cordoba) showed an average of total recount of 15x10{sup 6} ind/ml. The majority functional group present in the sludge was that of the Sessile Ciliates (70% over total). Thiothrix was the dominant filamentous organisms detected while were almost detected Sphaerotilus natans, Microthrix and the 1863 Type. the increase of temperature of water was linked to a higher values of the total recount as well as with the presence of Rizopodon. In this way, the higher exploitation yielding were obtained with values of the total recount between 7 and 20 x 10{sup 6} ind/ml and Sessile Ciliates amount higher than 60%. Finally, filamentous organisms are well controlled by the anaerobic selection system installed in the plant, which operates with values of SVI of 75 ml (average). (Author) 12 refs.

  19. Changes and variations of polycyclic aromatic hydrocarbon concentrations in fish, barnacles and crabs following an oil spill in a mangrove of Guanabara Bay, Southeast Brazil.

    Science.gov (United States)

    Soares-Gomes, Abílio; Neves, Roberta L; Aucélio, Ricardo; Van Der Ven, Paulo H; Pitombo, Fábio B; Mendes, Carla L T; Ziolli, Roberta L

    2010-08-01

    On April 26th, 2005, an accident caused a leak of 60,000L of Diesel Oil Type "B", freighted by train wagons upstream on a mangrove area within Guanabara Bay, Southeast Brazil. After the accident, samples from animals with different biological requirements were collected in order to monitor polycyclic aromatic hydrocarbons concentrations for the following 12months. Sessile, mobile, carnivorous, omnivorous, organic detritus feeders, planktivorous and suspension feeders were some of the attributes compared. Concentrations of PAHs did not vary in relation to different dietary habits and the best response was from the sessile suspensivorous barnacles. A background level of <50microgkg(-1) was suggested based on the reference site and on values observed in the following months after the accident. The highest values of PAH concentrations were observed in barnacles in the first month immediately after the spill, decreasing to background levels after few months. Barnacles are suggested as a sentinel species. PMID:20538307

  20. Night-time lighting alters the composition of marine epifaunal communities.

    Science.gov (United States)

    Davies, Thomas W; Coleman, Matthew; Griffith, Katherine M; Jenkins, Stuart R

    2015-04-01

    Marine benthic communities face multiple anthropogenic pressures that compromise the future of some of the most biodiverse and functionally important ecosystems in the world. Yet one of the pressures these ecosystems face, night-time lighting, remains unstudied. Light is an important cue in guiding the settlement of invertebrate larvae, and altering natural regimes of nocturnal illumination could modify patterns of recruitment among sessile epifauna. We present the first evidence of night-time lighting changing the composition of temperate epifaunal marine invertebrate communities. Illuminating settlement surfaces with white light-emitting diode lighting at night, to levels experienced by these communities locally, both inhibited and encouraged the colonization of 39% of the taxa analysed, including three sessile and two mobile species. Our results indicate that ecological light pollution from coastal development, shipping and offshore infrastructure could be changing the composition of marine epifaunal communities. PMID:25926694

  1. Multifocal epithelial hyperplasia: a case report of a family of Somalian descent living in Australia.

    Science.gov (United States)

    Hall, Charmaine; McCullough, Michael; Angel, Chris; Manton, David

    2010-01-01

    Multifocal epithelial hyperplasia (MEH) presents as painless, single or multiple nodular or papular lesions with a sessile base, ranging in diameter from 0.1 cm to 1.0 cm, frequently coalescing. Lesion color varies from red to white, depending on the extent of keratinization. The condition appears mainly in children and adolescents and regresses spontaneously. The etiological factors and pathogenesis of MEH are speculative. A 13-year-old boy presented to the Royal Dental Hospital of Melbourne for dental examination revealing several asymptomatic, exophytic, pink, sessile, smooth-surfaced nodules on the lateral borders of the tongue and lingual surface of the lower lip. The subject is of Somalian background and one of 11 siblings aged 2 to 22 years old living with his parents in an overcrowded residence. Examination of other family members revealed the presence of similar lesions in 2 younger sisters. An incisional biopsy confirmed the diagnosis of MEH histopathologically.

  2. Reusable molds for casting U-Zr alloys

    International Nuclear Information System (INIS)

    Refractory oxides, carbides, nitrides and sulfides were examined as mold coating materials for use in casting nuclear fuel. The molds require excellent high temperature chemical and mechanical stability combined with reasonable room temperature ductility to allow for fuel removal. Coatings were applied onto quartz and refractory metal coupons using various techniques. Sessile drop tests employing molten U-10%Zr (by weight) at 1550 degrees C were used to characterize coating performance. Results indicate that NbC, TiN, and Y2O3 were non-wetting with U-10%Zr. However, only the Y2O3 coating completely prevented adhesion of the fuel. The paper describes coating methods and details of the sessile drop experiments

  3. Morphological characteristics and DNA sequence analysis of Petriella setifera and Oidiodendron setiferum from twigs of diseased oak

    Directory of Open Access Journals (Sweden)

    Hanna Kwaśna

    2014-08-01

    Full Text Available Examination of isolates of Petriella setifera and Oidiodendron setiferum revealed new diagnostic morphological charactcristics. Chlamydosporcs formed by P. setifera, isolated from twigs of sessile oak (Quercus petraea showing symptoms of oak decline, are described for the first time. The first pictures of P. setifera anamorphs since the publication of its original description in 1912 are presented. Isolates of O. setiferum, from sessile oak twigs and from a log of Scots pine (Pinus sylvestris, were found to have swollen, hyaline, thin-walled, sterile apices on the non-fertile hairs surrounding the fertile heads of conidiophores. They also had numerous coils formed by thin hyphae in the submerged mycelium in agar culture. The taxonomy of both fungi was confirmed by rDNA sequence analysis.

  4. A sclerite-bearing stem group entoproct from the early Cambrian and its implications.

    Science.gov (United States)

    Zhang, Zhifei; Holmer, Lars E; Skovsted, Christian B; Brock, Glenn A; Budd, Graham E; Fu, Dongjing; Zhang, Xingliang; Shu, Degan; Han, Jian; Liu, Jianni; Wang, Haizhou; Butler, Aodhán; Li, Guoxiang

    2013-01-01

    The Lophotrochozoa includes disparate tentacle-bearing sessile protostome animals, which apparently appeared in the Cambrian explosion, but lack an uncontested fossil record. Here we describe abundant well preserved material of Cotyledion tylodes Luo et Hu, 1999, from the Cambrian (Series 2) Chengjiang deposits, reinterpreted here as a stem-group entoproct. The entoproct affinity is supported by the sessile body plan and interior soft anatomy. The body consists of an upper calyx and a lower elongate stalk with a distal holdfast. The soft anatomy includes a U-shaped gut with a mouth and aboral anus ringed by retractable marginal tentacles. Cotyledion differs from extant entoprocts in being larger, and having the calyx and the stalk covered by numerous loosely-spaced external sclerites. The description of entoprocts from the Chengjiang biota traces the ancestry of yet another lophotrochozoan phylum back to the Cambrian radiation, and has important implications for the earliest evolution of lophotrochozoans. PMID:23336066

  5. Epilithic community development on artificial reefs deployed along a cross-shelf environmental gradient off Paraná state, southern Brazil

    OpenAIRE

    Frederico Brandini; Ariel Scheffer da Silva

    2011-01-01

    Concrete modules were deployed on the bottom of the 11, 18 and 30 meters isobaths along a cross-shelf hydrographic gradient off Paraná State, Southern Brazil, with the purpose of studying the colonization of sessile epilithic macroinvertebrates on artificial surfaces. After one year of submersion a total of 63 species of epilithic organisms were identified, dominated by Ostrea puelchana, Chthamalus bisinuatus, Balanus cf spongicola, Astrangia cf rathbuni, Didemnum spp, poryphers and bryozoans...

  6. Bioactive Sesterterpenes and Triterpenes from Marine Sponges: Occurrence and Pharmacological Significance

    OpenAIRE

    WenHan Lin; Peter Proksch; Ebada, Sherif S.

    2010-01-01

    Marine ecosystems (>70% of the planet's surface) comprise a continuous resource of immeasurable biological activities and immense chemical entities. This diversity has provided a unique source of chemical compounds with potential bioactivities that could lead to potential new drug candidates. Many marine-living organisms are soft bodied and/or sessile. Consequently, they have developed toxic secondary metabolites or obtained them from microorganisms to defend themselves against predators [...

  7. Biotechnological Approaches to Study Plant Responses to Stress

    OpenAIRE

    Pérez-Clemente, Rosa M; Vicente Vives; Zandalinas, Sara I.; López-Climent, María F.; Valeria Muñoz; Aurelio Gómez-Cadenas

    2013-01-01

    Multiple biotic and abiotic environmental stress factors affect negatively various aspects of plant growth, development, and crop productivity. Plants, as sessile organisms, have developed, in the course of their evolution, efficient strategies of response to avoid, tolerate, or adapt to different types of stress situations. The diverse stress factors that plants have to face often activate similar cell signaling pathways and cellular responses, such as the production of stress proteins, upre...

  8. Ex situ cultivation of the soft coral Sinularia flexibilis for biotechnological exploration

    OpenAIRE

    Khalesi, M.K.

    2008-01-01

    Many of the marine sessile invertebrates such as soft corals produce toxins that help protect the coral from competitors and predators. These toxins are of medical importance (e.g. in cancer treatment). In recent years, there has been a focus to make use of marine organisms for this purpose. As a result, marine biotechnology is developing to meet the increasing demand. This thesis deals with one of the biomedically useful symbiotic soft corals, Sinularia flexibilis that co-exists with dinofla...

  9. Carriage of Extended-Spectrum Beta-Lactamase-Plasmids Does Not Reduce Fitness but Enhances Virulence in Some Strains of Pandemic E. coli Lineages

    OpenAIRE

    Schaufler, Katharina; Semmler, Torsten; Pickard, Derek J.; de Toro, María; de la Cruz, Fernando; Lothar H Wieler; Ewers, Christa; Guenther, Sebastian

    2016-01-01

    Pathogenic ESBL-producing E. coli lineages occur frequently worldwide, not only in a human health context but in animals and the environment, also in settings with low antimicrobial pressures. This study investigated the fitness costs of ESBL-plasmids and their influence on chromosomally encoded features associated with virulence, such as those involved in the planktonic and sessile behaviors of ST131 and ST648 E. coli. ESBL-plasmid-carrying wild-type E. coli strains, their corresponding ESBL...

  10. Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

    OpenAIRE

    Léger Patrick; Cabane Cyril; Abadie Pierre; Derory Jérémy; Brendel Oliver; Murat Florent; Abrouk Michael; Salse Jérôme; Salin Franck; Frigerio Jean-Marc; Noirot Céline; Klopp Christophe; Léger Valérie; Le Provost Grégoire; Ueno Saneyoshi

    2010-01-01

    Abstract Background The Fagaceae family comprises about 1,000 woody species worldwide. About half belong to the Quercus family. These oaks are often a source of raw material for biomass wood and fiber. Pedunculate and sessile oaks, are among the most important deciduous forest tree species in Europe. Despite their ecological and economical importance, very few genomic resources have yet been generated for these species. Here, we describe the development of an EST catalogue that will support e...

  11. Study of grapevine solute transporters involved in berry quality. A biochemical and molecular approach

    OpenAIRE

    Noronha, Henrique Luis Silva de

    2015-01-01

    Tese de Doutoramento em Biologia de Plantas Due to its sessile nature, plants must take up mineral nutrients and water from the soil, and fix carbon in leaves from atmospheric CO2. The resulting photoassimilates must be precisely delivered to each plant organ, including leaves, roots and fruits. The present dissertation explored key biochemical mechanisms involved in the transport and compartmentation of sugars and water in grapevine. The fixation of carbon in chloroplasts, ...

  12. PROBLEMS OF BIOFOULING ON FISH–CAGE NETS IN AQUACULTURE

    OpenAIRE

    Merica Slišković; Gorana Jelić

    2002-01-01

    Biofouling on fish–cage netting is a serious technical and economical problem to aquaculture worldwide. Compensation for the effects of biofouling must be included in cage system design and planning, as fouling can dramatically increase both weight and drag. Settlements of sessile plants and animals, with accumulation of the detritus diminish the size of mesh and can rapidly occlude mesh. Negative effect of smaller mesh size is changing in water flow trough the cages. Biofouling problems nece...

  13. Low-molecular-weight metabolite systems chemistry

    OpenAIRE

    Hadacek, Franz; Bachmann, Gert

    2015-01-01

    Low-molecular-weight metabolites (LMWMs) comprise primary or central and a plethora of intermediary or secondary metabolites, all of which are characterized by a molecular weight below 900 Dalton. The latter are especially prominent in sessile higher organisms, such as plants, corals, sponges and fungi, but are produced by all types of microbial organisms too. Common to all of these carbon molecules are oxygen, nitrogen and, to a lesser extent, sulfur, as heteroatoms. The latter can contribut...

  14. High throughput Single-cell Cultivation on Microfluidic Streak Plates

    OpenAIRE

    Jiang, Cheng-Ying; Dong, Libing; Zhao, Jian-Kang; Hu, Xiaofang; Shen, Chaohua; Qiao, Yuxin; Zhang, Xinyue; Wang, Yapei; Ismagilov, Rustem F.; Liu, Shuang-Jiang; Du, Wenbin

    2016-01-01

    This paper describes the microfluidic streak plate (MSP), a facile method for high-throughput microbial cell separation and cultivation in nanoliter sessile droplets. The MSP method builds upon the conventional streak plate technique by using microfluidic devices to generate nanoliter droplets that can be streaked manually or robotically onto petri dishes prefilled with carrier oil for cultivation of single cells. In addition, chemical gradients could be encoded in the droplet array for compr...

  15. Ecología química en el bentos marino de la Antártida: productos naturales y defensa química en esponjas hexactinélidas, corales blandos y ascidias coloniales

    OpenAIRE

    Núñez Pons, Laura

    2012-01-01

    The inhabitants of marine benthos must combat the ecological pressure caused by predation, competition and fouling through a series of mechanisms, one of which is chemical defense. This type of protection is particularly extended among sessile and/or sluggish organisms, such as sponges, soft corals or ascidians. The strategies to prevent predation are related to bad taste rather than to toxicity. Moreover, they must be considered along with nutritional quality, since the more nutritious the p...

  16. Chondrilla nucula (Porifera, Demospongiae) : an example of successful plasticity ; ecological and morphological aspects

    OpenAIRE

    Sidri, Marzia

    2004-01-01

    Sponges (Porifera) represent an important component of the Mediterranean sessile benthic community. They are present both in shallow and deeper waters, on soft and hard bottoms and some species, namely the bath sponges, has an application in human life since a long time. In the last few decades, they also assumed an importance among the organisms producing bioactive compounds which application goes from the homeopathy to the classical medicine to the industry. The study of the taxonomy, ecolo...

  17. Gene Flow and Genetic Diversity of a Broadcast-Spawning Coral in Northern Peripheral Populations

    OpenAIRE

    Yuichi Nakajima; Akira Nishikawa; Akira Iguchi; Kazuhiko Sakai

    2010-01-01

    Recently, reef-building coral populations have been decreasing worldwide due to various disturbances. Population genetic studies are helpful for estimating the genetic connectivity among populations of marine sessile organisms with metapopulation structures such as corals. Moreover, the relationship between latitude and genetic diversity is informative when evaluating the fragility of populations. In this study, using highly variable markers, we examined the population genetics of the broadca...

  18. Monitoring microbial corrosion in large oilfield water systems

    Energy Technology Data Exchange (ETDEWEB)

    Chen, E.Y.; Chen, R.B.

    1984-07-01

    Monitoring of microbial corrosion is always difficult because of the sessile nature of bacteria and the lack of meaningful correlation between routine bacteria counts and bacterial activity. This problem is further aggravated in a large oilfield water system because of size and sampling difficulties. This paper discusses some monitoring techniques currently used in the oil industry, their limitations, and possible areas for improvement. These improved techniques are in use or will be implemented in the Aramco systems.

  19. Monitoring microbial corrosion in large oilfield water systems

    Energy Technology Data Exchange (ETDEWEB)

    Chen, E.Y.; Chen, R.B.

    1983-03-01

    Monitoring of microbial corrosion is always difficult because of the sessile nature of bacteria and the lack of meaningful correlation between routine bacteria counts and bacterial activity. This problem is further aggravated in a large oilfield water system because of its size and sampling difficulties. This paper discusses some monitoring techniques currently used in the oil industry, their limitations and the possible areas for improvement. These suggested improvements either are presently being implemented or will be implemented in the Aramco systems.

  20. Ultraviolet laser-induced submicron spatially resolved superhydrophilicity on single crystal lithium niobate surfaces

    International Nuclear Information System (INIS)

    Lithium niobate crystal surfaces become superhydrophilic after ultraviolet laser irradiation. The crystal surface hydrophilicity, which was assessed by the contact angle of a sessile drop of de-ionized water, was found to undergo a transition from mildly hydrophobic (contact angle θE≅50 degree sign ) to a superhydrophilic state (θE<5 degree sign ). Patterning of the hydrophilicity at the micron and submicron ranges has been achieved by spatially modulating the illuminating laser beam

  1. The influence of mature oak stands and spruce plantations on soil-dwelling click beetles in lowland plantation forests

    OpenAIRE

    Loskotová, Tereza; Horák, Jakub

    2016-01-01

    Most European forests have been converted into forest plantations that are managed for timber production. The main goal of this paper was to determine the difference between mature native sessile oak (Quercus petraea) stands and non-indigenous Norway spruce (Picea abies) plantations, with respect to communities of Athous click beetles in approximately 6,500 ha of lowland plantation forest area in the Czech Republic. Athous subfuscus was the most abundant and widespread species, followed by A....

  2. Structure and distribution of glandular and non-glandular trichomes on above-ground organs in Inula helenium L. (Asteraceae

    Directory of Open Access Journals (Sweden)

    Aneta Sulborska

    2014-01-01

    Full Text Available Micromorphology and distribution of glandular and non-glandular trichomes on the above-ground organs of Inula helenium L. were investigated using light and scanning electron microscopy (SEM. Two types of biseriate glandular trichomes, i.e. sessile and stalk hairs, and non-glandular trichomes were recorded. Sessile glandular trichomes were found on all examined I. helenium organs (with their highest density on the abaxial surface of leaves and disk florets, and on stems, whereas stalk glandular trichomes were found on leaves and stems. Sessile trichomes were characterised by a slightly lower height (58–103 μm and width (32–35 μm than the stalk trichomes (62–111 μm x 31–36 μm. Glandular hairs were composed of 5–7 (sessile trichomes or 6–9 (stalk trichomes cell tiers. Apical trichome cell tiers exhibited features of secretory cells. Secretion was accumulated in subcuticular space, which expanded and ruptured at the top, and released its content. Histochemical assays showed the presence of lipids and polyphenols, whereas no starch was detected. Non-glandular trichomes were seen on involucral bracts, leaves and stems (more frequently on involucral bracts. Their structure comprised 2–9 cells; basal cells (1–6 were smaller and linearly arranged, while apical cells had a prozenchymatous shape. The apical cell was the longest and sharply pointed. Applied histochemical tests revealed orange-red (presence of lipids and brow colour (presence of polyphenols in the apical cells of the trichomes. This may suggest that beside their protective role, the trichomes may participate in secretion of secondary metabolites.

  3. Parhadjelia cairinae n. sp. (Nematoda: Habronematoidea: Habronematidae) in the Muscovy duck, Cairina moschata (Linnaeus, 1758) (Aves: Anseriformes: Anatidae), from the area de conservacion Guanacaste, Costa Rica.

    Science.gov (United States)

    Zhang, Luping; Brooks, Daniel R

    2005-04-01

    A new species of Parahadjelia occurs in the muscovy duck, Cairina moschata (Linnaeus, 1758), from the Area de Conservacion Guanacaste, Costa Rica. The new species differs from Parhadjelia neglecta Lent and Freitas, 1939, in the body size, in the spicules shape and ratio of spicules, and in having 2 pairs of sessile papillae near the tail tip of the male. The characters exhibited by P. neglecta and the new species validate its generic status distinct from Hadjelia.

  4. Role and Regulation of Autophagy in Heat Stress Responses of Tomato Plants

    OpenAIRE

    Jie eZhou; Jian eWang; Jingquan eYu; Zhixiang eChen

    2014-01-01

    As sessile organisms, plants are constantly exposed to a wide spectrum of stress conditions such as high temperature, which causes protein misfolding. Misfolded proteins are highly toxic and must be efficiently removed to reduce cellular proteotoxic stress if restoration of native conformations is unsuccessful. Although selective autophagy is known to function in protein quality control by targeting degradation of misfolded and potentially toxic proteins, its role and regulation in heat st...

  5. Focal epithelial hyperplasia arising after delivery of metal-ceramic fixed dental prosthesis

    OpenAIRE

    Park, Min-Woo; Cho, Young-Ah; Kim, Soung-Min; Myoung, Hoon; Lee, Jong-Ho; Lee, Suk-Keun

    2014-01-01

    Focal epithelial hyperplasia (FEH) is a human papillomavirus (HPV)-induced alteration of the oral mucosa that presents with a clinically distinct appearance. While other HPV-infected lesions such as squamous papilloma, verruca vulgaris, and condyloma acuminatum involve the skin, oral mucosa, and genital mucosa, FEH occurs only in the oral mucosa. The affected oral mucosa exhibits multiple papules and nodules with each papule/nodule being flat-topped or sessile. The affected region resembles t...

  6. Wettability, surface tension and reactivity ofthe molten manganese/zirconia-yttria ceramic system

    OpenAIRE

    Shinozaki, N; Sonoda, M; Mukai, K.

    1998-01-01

    A basic research for improvement of plasma sprayed zirconia coatings has been conducted. Contact angle and surface tension of molten manganese/zirconia-yttria ceramic system weremeasured at 1573K by the sessile drop method, suggesting that molten manganese would spontaneously infiltrate open pores inzirconia coatings. Structure and elementary composition development of ZirCOnIa ceramICs caused by reaction with manganese were examined by using SEM(Scanning Electron Microscopy), EPMA(Electron P...

  7. Linking climate change and biological invasions: Ocean warming facilitates nonindigenous species invasions

    OpenAIRE

    Stachowicz, John J.; Terwin, Jeffrey R.; Whitlatch, Robert B.; Osman, Richard W.

    2002-01-01

    The spread of exotic species and climate change are among the most serious global environmental threats. Each independently causes considerable ecological damage, yet few data are available to assess whether changing climate might facilitate invasions by favoring introduced over native species. Here, we compare our long-term record of weekly sessile marine invertebrate recruitment with interannual variation in water temperature to assess the likely effect of climate change on the success and ...

  8. Density of Liquid Steel over Temperature Range of 1 803-1 873 K

    Institute of Scientific and Technical Information of China (English)

    XIAO Feng; FANG Liang

    2004-01-01

    The density of three kinds of liquid steel was measured by a modified sessile drop method over the temperature range of 1 803-1 873 K. It is found that the density of liquid steels decreases with increasing temperature and carbon content in steel. Both of the density and its absolute temperature coefficient of studied steels are smaller than the literature values of pure iron. The molar volume of the steels increases with increasing temperature.

  9. Airborne signals from salt-stressed Arabidopsis plants trigger salinity tolerance in neighboring plants

    OpenAIRE

    Lee, Kyounghee; Seo, Pil Joon

    2014-01-01

    Plants have evolved sophisticated defense mechanisms to overcome their sessile nature. One remarkable strategy is the inter-plant communication mediated by volatile organic compounds (VOCs). Quantity and quality of plant VOCs are intricately regulated by biotic and abiotic stresses, and the alterations facilitate plant community to optimize their growth, development, and endogenous physiology to environmental fluctuations. Here, we report that Arabidopsis thaliana plants that experience high ...

  10. INVESTIGATION ON THE PROPERTIES OF PEDUNCULATE OAK WOOD AFFECTED BY OAK DECLINE

    OpenAIRE

    Dumitru LICA; Camelia COŞEREANU

    2014-01-01

    The combination of damaging agents, as biotic and abiotic factors, has as effect the deterioration in the appearance of the foliage of affected trees and then, progressive death of branches. Large numbers of pedunculate oak (Quercus robur) and sessile oak (Quercus petraea) trees are declining in the Central Romania. Depending on the deterioration of the foliage and of the branches, five grades of infestation levels of oak trees were determined. The objective of this study was to i...

  11. Effects of Artificial Regeneration Methods on Mortality, Growth and Shape of Oak Seedlings in a Central European Oak-Hornbeam Stand

    OpenAIRE

    TOBISCH, Tamás

    2007-01-01

    This paper analyses the results of an artificial regeneration experiment carried out in anoak-hornbeam stand. The effects of initial seedling density (10200, 14300, 35700 stems per hectare),spacing geometry (140 cm x 70 cm, 240 cm x 40 cm), chemical (with Erunit and Nabu) andmechanical weeding of pedunculate (Quercus robur) and sessile oak (Quercus petraea) wereexamined at the age of eight years. The mortality of Q. robur seedlings was independent of the initialdensity but that of Q. petraea ...

  12. Regeneration Patterns of European Oak Species (Quercus petraea (Matt.) Liebl., Quercus robur L.) in Dependence of Environment and Neighborhood

    OpenAIRE

    Peter Annighöfer; Philip Beckschäfer; Torsten Vor; Christian Ammer

    2015-01-01

    Quercus robur L. (pedunculate oak) and Quercus petraea (Matt.) Liebl. (sessile oak) are two European oak species of great economic and ecological importance. Even though both oaks have wide ecological amplitudes of suitable growing conditions, forests dominated by oaks often fail to regenerate naturally. The regeneration performance of both oak species is assumed to be subject to a variety of variables that interact with one another in complex ways. The novel approach of this research was to ...

  13. Night-time lighting alters the composition of marine epifaunal communities

    OpenAIRE

    Davies, Thomas W; Coleman, Matthew; Griffith, Katherine M.; Stuart R Jenkins

    2015-01-01

    Marine benthic communities face multiple anthropogenic pressures that compromise the future of some of the most biodiverse and functionally important ecosystems in the world. Yet one of the pressures these ecosystems face, night-time lighting, remains unstudied. Light is an important cue in guiding the settlement of invertebrate larvae, and altering natural regimes of nocturnal illumination could modify patterns of recruitment among sessile epifauna. We present the first evidence of night-tim...

  14. Heterotopic Pancreas in the Stomach: A Case Report and a Brief Review of the Literature

    OpenAIRE

    Uday A Gokhale; Annu Nanda; Rajasekharan Pillai; Dhia Al-Layla

    2010-01-01

    Context Heterotopic pancreas is the presence of pancreatic tissue found outside the usual anatomical location of the pancreas. It is a rare condition and can occur anywhere in the gastrointestinal tract with the stomach and the small bowel being the most common sites. It is usually asymptomatic and often discovered incidentally. Case report We report the case of a 48-year-old Omani female who presented with recurrent epigastric pain. Endoscopy revealed a sessile mass in the antrum which was s...

  15. Density and Structure Analysis of Molten Ni-W Alloys

    Institute of Scientific and Technical Information of China (English)

    Feng XIAO; Liang FANG

    2004-01-01

    Density of molten Ni and Ni-W alloys was measured in the temperature range of 1773~1873 K with a sessile drop method.The density of molten Ni and Ni-W alloys trends to decrease with increasing temperature. The density and molar volume of the alloys trend to increase with increasing W concentration in the alloys. The calculation result shows an ideal mixing of Ni-W alloys.

  16. Density of Liquid Ni-Cr Alloy

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    The density of liquid Ni-Cr alloy was measured by a modified sessile drop method. The density of liquid Ni-Cr alloywas found to decrease with increasing temperature and Cr concentration in the alloy. The molar volume of liquidNi-Cr alloy increases with increasing the Cr concentration in the alloy. The molar volume of Ni-Cr alloy determinedin the present work shows a positive deviation from the linear molar volume.

  17. Efficiency of group work in harvesting mountainous broadleaf thinning stands

    OpenAIRE

    Legat, Nejc; Zečić, Željko; Krpan, Ante P. B.

    2016-01-01

    Group work was researched for felling, processing, skidding and quality inspection activities in mountainous broadleaf thinning stands with approximately the same terrain and stand conditions. The stands were 55 and 70years old. In the forest communities of the mountainous beech forest with dead nettle (Lamio orvale - Fagetum sylvaticae/Ht. 1938) and the forests of the sessile oak and horn beam with beech (Epimedio - Carpinetum betuli var. Fagus sylvatica/Ht. 1938/Borth.1963), the main tree s...

  18. A live infant with trisomy 14 mosaicism and nuclear abnormalities of the neutrophils.

    Science.gov (United States)

    Dallapiccola, B; Ferranti, G; Giannotti, A; Novelli, G; Pasquini, L; Porfirio, B

    1984-01-01

    Mosaic trisomy 14 is described in a patient with severe developmental retardation and congenital malformations. Together with a few previous reports, this case suggests the existence of a syndrome associated with this chromosome imbalance. Hitherto unrecognised manifestations of trisomy 14 mosaicism were, in our patient, abnormalities of the neutrophil nuclei, which consisted of multiple pedunculated or sessile projections, similar to those characteristically associated with trisomy 13 syndrome. Images PMID:6512839

  19. DNA repair in plants studied by comet assay

    OpenAIRE

    Karel J Angelis; Jaroslav Kozák

    2015-01-01

    Comet assay in plants. From the first description of the comet assay with isolated nuclei rather than whole cells it became evident that assay is well suited to be applied in plants (Koppen & Verschaeve, 1996). Disintegration of tissue by quick chopping with a razor blade, direct collection of released nuclei by patting and pipetting enables to process samples in time shorter than 2 minutes, the time prerequisite to study quick repair (Kozak et al, 2009). Plants are due to their sessil...

  20. Adoption of conserved developmental genes in development and origin of the medusa body plan

    OpenAIRE

    Kraus, Johanna E. M.; Fredman, David; Wang, Wei; Khalturin, Konstantin; Technau, Ulrich

    2015-01-01

    Background The metagenesis of sessile polyps into pelagic medusae in cnidarians represents one of the most ancient complex life cycles in animals. Interestingly, scyphozoans and hydrozoans generate medusae by apparently fundamentally different processes. It is therefore unclear whether medusa formation has evolved independently in different medusozoans. To this end, a thorough understanding of the correspondence of polyp and medusa is required. Results We monitored the expression patterns of ...

  1. Hormonal crosstalk for root development: a combined experimental and modelling perspective.

    OpenAIRE

    Keith eLindsey; James eRowe; Junli eLiu

    2014-01-01

    Plants are sessile organisms and therefore they must adapt their growth and architecture to a changing environment. Understanding how hormones and genes interact to coordinate plant growth in a changing environment is a major challenge in developmental biology. Although a localized auxin concentration maximum in the root tip is important for root development, auxin concentration cannot change independently of multiple interacting hormones and genes. In this review, we discuss the experimental...

  2. In vitro antimicrobial activity of Pseudomonas aeruginosa by-products against single and mixed biofilms : the role of Gram- bacteria in the biofilm consortium

    OpenAIRE

    Pereira, Maria Olívia; Machado, Idalina; Lopes, Susana Patrícia

    2010-01-01

    Since bacteria are permanently acquiring resistance to chemicals, the development of novel strategies for biofilm control is needed. Certain microorganisms represent an important source of novel bioactive compounds with marked antibacterial activity, as the secondary metabolites. This work aimed to investigate the antimicrobial effect of P.aeruginosa by-products on planktonic and sessile growth of several pathogenic bacteria. Supernatants from P.aeruginosa planktonic cultures (iso...

  3. Marine plastic litter as an artificial hard bottom fouling ground

    Science.gov (United States)

    Harms, J.

    1990-09-01

    20 fouling organisms were observed on plastic litter dredged from the Elbe estuary during July 1990; 60% of the species were typical sessile hard bottom organisms. Most individuals found on this artificial hard bottom were barnacles ( Balanus crenatus, Elminius modestus), the mussel Mytilus edulis and the polychaete Lanice conchilega. All individuals were juveniles which had settled only recently on the plastics. The earliest settlers were not much older than 4 8 weeks.

  4. DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species

    OpenAIRE

    Alter, Svenja; Bader, Kai C.; Spannagl, Manuel; Wang, Yu; Bauer, Eva; Schön, Chris-Carolin; Mayer, Klaus F. X.

    2015-01-01

    Plants are sessile and therefore exposed to a number of biotic and abiotic stresses. Drought is the major abiotic stress restricting plant growth worldwide. A number of genes involved in drought stress response have already been characterized, mainly in the model species Arabidopsis thaliana and Oryza sativa. However, with the aim to produce drought tolerant crop varieties, it is of importance to identify the respective orthologs for each species. We have developed DroughtDB, a manually curat...

  5. Trophic versus structural effects of a marine foundation species, giant kelp (Macrocystis pyrifera).

    Science.gov (United States)

    Miller, Robert J; Page, Henry M; Reed, Daniel C

    2015-12-01

    Foundation species create milieus in which ecosystems evolve, altering species abundances and distribution often to a dramatic degree. Although much descriptive work supports their importance, there remains little definitive information on the mechanisms by which foundation species alter their environment. These mechanisms fall into two basic categories: provision of food or other materials, and modification of the physical environment. Here, we manipulated the abundance of a marine foundation species, the giant kelp Macrocystis pyrifera, in 40 × 40-m plots at Mohawk Reef off Santa Barbara, California and found that its biomass had a strong positive effect on the abundance of bottom-dwelling sessile invertebrates. We examined the carbon (C) stable isotope values of seven species of sessile invertebrates in the treatment plots to test the hypothesis that this positive effect resulted from a nutritional supplement of small suspended particles of kelp detritus, as many studies have posited. We found no evidence from stable isotope analyses to support the hypothesis that kelp detritus is an important food source for sessile suspension-feeding invertebrates. The isotope composition of invertebrates varied with species and season, but was not affected by kelp biomass, with the exception of two species: the tunicate Styela montereyensis, which exhibited a slight enrichment in C stable isotope composition with increasing kelp biomass, and the hydroid Aglaophenia sp., which showed the opposite effect. These results suggest that modification of the physical habitat, rather than nutritional subsidy by kelp detritus, likely accounts for increased abundance of sessile invertebrates within giant kelp forests. PMID:26358195

  6. An Update on the Management of Endodontic Biofilms Using Root Canal Irrigants and Medicaments

    OpenAIRE

    Mohammadi, Zahed; Soltani, Mohammad Karim; Shalavi, Sousan

    2014-01-01

    Microbial biofilm is defined as a sessile multicellular microbial community characterized by cells that are firmly attached to a surface and enmeshed in a self-produced matrix of extracellular polymeric substances. Biofilms play a very important role in pulp and periradicular pathosis. The aim of this article was to review the role of endodontic biofilms and the effects of root canal irrigants, medicaments as well as lasers on biofilms A Medline search was performed on the English articles pu...

  7. Procédés membranaires pour le traitement de l'eau, étude et modélisation des interctions entre membranes et composés organiques

    OpenAIRE

    Mai, Zhaohuan

    2013-01-01

    The aim of this work is a better understanding of the microscopic behavior of organic matters during the wastewater treatment of complex mixtures, especially during the membrane processes. Both experimental and simulation methods were developed in this work. Experimentally, adsorption isotherms were built to study the adsorption of organic matters on the membrane surface during the filtration. The sessile drop measurement allowed investigating the surface properties (interfacial tensions) of ...

  8. Coccoid Form of Helicobacter pylori as a Morphological Manifestation of Cell Adaptation to the Environment▿ †

    Science.gov (United States)

    Azevedo, N. F.; Almeida, C.; Cerqueira, L.; Dias, S.; Keevil, C. W.; Vieira, M. J.

    2007-01-01

    After characterization of preferred conditions for Helicobacter pylori survival in the sessile state, it was observed that the bacterium transforms from spiral to coccoid under mild circumstances, whereas under extreme ones it is unable to undergo shape modification. This strongly supports the view that transformation into the coccoid form is an active, biologically led process, switched on by the bacterium as a protection mechanism. PMID:17400788

  9. Biofilm Formation and Dispersal under the Influence of the Global Regulator CsrA of Escherichia coli

    OpenAIRE

    Jackson, Debra W.; Suzuki, Kazushi; Oakford, Lawrence; Simecka, Jerry W.; Hart, Mark E.; Romeo, Tony

    2002-01-01

    The predominant mode of growth of bacteria in the environment is within sessile, matrix-enclosed communities known as biofilms. Biofilms often complicate chronic and difficult-to-treat infections by protecting bacteria from the immune system, decreasing antibiotic efficacy, and dispersing planktonic cells to distant body sites. While the biology of bacterial biofilms has become a major focus of microbial research, the regulatory mechanisms of biofilm development remain poorly defined and thos...

  10. Cancellous osteoma of maxilla: A rare case report

    Science.gov (United States)

    Debta, Priyanka; Debta, F. M.; Bussari, Smita; Acharya, Swati S.; Jeergal, Vasanti A.

    2016-01-01

    Osteoma is a slow growing benign tumor result from either cancellous or compact bone proliferation. Osteoma of the jaws may arise from the surface of the bone as a sessile mass located either peripherally or endosteally. This paper presents a rare case report of peripheral cancellous osteoma, involving the buccal cortical plate and alveolar process of the right maxilla of a 37-year-old female patient. PMID:27382545

  11. Microcoupon Assay Of Adhesion And Growth Of Bacterial Films

    Science.gov (United States)

    Pierson, Duane L.; Koenig, David W.

    1994-01-01

    Microbiological assay technique facilitates determination of some characteristics of sessile bacteria like those that attach to and coat interior walls of water-purification systems. Biofilms cause sickness and interfere with purification process. Technique enables direct measurement of rate of attachment of bacterial cells, their metabolism, and effects of chemicals on them. Used to quantify effects of both bactericides and growth-stimulating agents and in place of older standard plate-count and tube-dilution techniques.

  12. Chapelieria magna, a new species of Rubiaceae from eastern Madagascar

    OpenAIRE

    Kent Kainulainen; Razafimandimbison, Sylvain G.

    2015-01-01

    Abstract A new species of Chapelieria was discovered during a recent field trip to the Masoala National Park in eastern Madagascar, and is described here as Chapelieria magna Kainul., sp. nov. This species is readily distinguishable from previously described species of the genus by its quadrangular shoots, triangular-calyptrate stipules, sessile leaves, pubescent styles, and ridged fruits. It also differs in the larger number of ovules and the much larger size of leaves and fruits.

  13. Competitive Interactions between Invasive Nile Tilapia and Native Fish: The Potential for Altered Trophic Exchange and Modification of Food Webs

    OpenAIRE

    Martin, Charles W.; Valentine, Marla M.; Valentine, John F.

    2010-01-01

    Recent studies have highlighted both the positive and negative impacts of species invasions. Most of these studies have been conducted on either immobile invasive plants or sessile fauna found at the base of food webs. Fewer studies have examined the impacts of vagile invasive consumers on native competitors. This is an issue of some importance given the controlling influence that consumers have on lower order plants and animals. Here, we present results of laboratory experiments designed to ...

  14. The bivalve Laternula elliptica: physiological and molecular response to changing coastal Antarctic environments

    OpenAIRE

    Husmann, Gunnar

    2013-01-01

    Increasing temperatures and glacier-disintegration at the Western Antarctic Peninsula (WAP) are presently altering environmental conditions in shallow coastal areas. Rising water temperatures, enhanced ice scouring impacts as well as increasing input of inorganic sediments from melt water runoff are anticipated to particularly affect slow growing sessile benthic filter feeders like the Antarctic soft shell clam Laternula elliptica, a long-lived species which is a major component of the nearsh...

  15. BcsA and BcsB form the catalytically active core of bacterial cellulose synthase sufficient for in vitro cellulose synthesis

    OpenAIRE

    Omadjela, Okako; Narahari, Adishesh; Strumillo, Joanna; Mélida, Hugo; Mazur, Olga; Bulone, Vincent; Zimmer, Jochen

    2013-01-01

    Cellulose is the most abundant biopolymer on Earth, primarily formed by vascular plants, but also by some bacteria. Bacterial extracellular polysaccharides, such as cellulose and alginate, are an important component of biofilms, which are multicellular, usually sessile, aggregates of bacteria. Biofilms exhibit a greater resistance to antimicrobial treatments compared with isolated bacteria and thus are a particular concern to human health. Cellulose synthases synthesize cellulose by polymeriz...

  16. Brachiopods hitching a ride: an early case of commensalism in the middle Cambrian Burgess Shale

    OpenAIRE

    Topper, Timothy P.; Holmer, Lars E.; Jean-Bernard Caron

    2014-01-01

    Ecological interactions, including symbiotic associations such as mutualism, parasitism and commensalism are crucial factors in generating evolutionary novelties and strategies. Direct examples of species interactions in the fossil record generally involve organisms attached to sessile organisms in an epibiont or macroboring relationship. Here we provide support for an intimate ecological association between a calcareous brachiopod (Nisusia) and the stem group mollusc Wiwaxia from the Burgess...

  17. Wetting of Au and Ag particles on monocrystalline graphite substrates

    Institute of Scientific and Technical Information of China (English)

    Joonho Lee; Toshihiro Tanaka; Kazufumi Seo; Nobumitsu Hirai; Jung-Goo Lee; Hirotaro Mori

    2006-01-01

    The wetting behavior of Au and Ag particles on a monocrystalline graphite substrate was investigated using the microscopic sessile drop method under a purified Ar atmosphere at 1300 K. The measured contact angles of the liquid Au and Ag on monocrystalline graphite substrates of (0001) face were 129° and 124°, respectively. It is believed that the interaction at the interface is dominated by the physical bonding (van der Waal's interaction).

  18. Root vitality of Fagus sylvatica L., Quercus petraea Liebl. and Acer pseudoplatanus L. in mature mixed forest stand

    Directory of Open Access Journals (Sweden)

    Grygoruk Dorota

    2016-06-01

    Full Text Available The main task of the present study was to investigate the root vitality of common beech Fagus sylvatica L., sessile oak Quercus petraea Liebl. and sycamore maple Acer pseudoplatanus L. in the optimal g rowth conditions in south-western Poland. The study was carried out in 130-year-old mixed stand located within natural range of studied tree species. The density of roots (g/100 cm3 of soil and biomass of fine roots (g/m2 in topsoil layers (0-5 cm, 5-15 cm were determined in the tree biogroups of the same species. The mean total root density ranged from 0.248 to 0.417 g/100 cm3 in the 0-5 cm soil layer, and it decreased in the deeper soil layer (5-15 cm. There were found no statistically significant differences of total root densities between tree biogroups in topsoil layers. Diversity of fine root biomass was comparable in the tree biogroups (H’ = 1.5, but common beech showed more intensive growth of fine roots in the topsoil 0-15 cm when compared to sessile oak and sycamore maple. The results of the study point out the stability of the multi-species structure of the mixed stand studied, and consequently - the ability of beech, sessile oak and sycamore maple trees to coexist in the mixed stands - in the area of natural range of these species.

  19. Comparison of the efficacy of natural-based and synthetic biocides to disinfect silicone and stainless steel surfaces.

    Science.gov (United States)

    Gomes, I B; Malheiro, J; Mergulhão, F; Maillard, J-Y; Simões, M

    2016-06-01

    New biocidal solutions are needed to combat effectively the evolution of microbes developing antibiotic resistance while having a low or no environmental toxicity impact. This work aims to assess the efficacy of commonly used biocides and natural-based compounds on the disinfection of silicone and stainless steel (SS) surfaces seeded with differentStaphylococcus aureusstrains. Minimum inhibitory concentration was determined for synthetic (benzalkonium chloride-BAC, glutaraldehyde-GTA,ortho-phthalaldehyde-OPA and peracetic acid-PAA) and natural-based (cuminaldehyde-CUM), eugenol-EUG and indole-3-carbinol-I3C) biocides by the microdilution method. The efficacy of selected biocides at MIC, 10 × MIC and 5500 mg/L (representative in-use concentration) on the disinfection of sessileS. aureuson silicone and SS was assessed by viable counting. Silicone surfaces were harder to disinfect than SS. GTA, OPA and PAA yielded complete CFU reduction of sessile cells for all test concentrations as well as BAC at 10 × MIC and 5500 mg/L. CUM was the least efficient compound. EUG was efficient for SS disinfection, regardless of strains and concentrations tested. I3C at 10 × MIC and 5500 mg/L was able to cause total CFU reduction of silicone and SS deposited bacteria. Although not so efficient as synthetic compounds, the natural-based biocides are promising to be used in disinfectant formulations, particularly I3C and EUG. PMID:26926153

  20. Seasonal sediment dynamics shape temperate bedrock reef communities

    Science.gov (United States)

    Figurski, Jared D.; Freiwald, Jan; Lonhart, Steve I.; Storlazzi, Curt

    2016-01-01

    Mobilized seafloor sediment can impact benthic reef communities through burial, scour, and turbidity. These processes are ubiquitous in coastal oceans and, through their influence on the survival, fitness, and interactions of species, can alter the structure and function of benthic communities. In northern Monterey Bay, California, USA, as much as 30% of the seafloor is buried or exposed seasonally, making this an ideal location to test how subtidal temperate rocky reef communities vary in the presence and absence of chronic sediment-based disturbances. Designated dynamic plots were naturally inundated by sediment in summer (50 to 100% cover) and swept clean in winter, whereas designated stable plots remained free of sediment during our study. Multivariate analyses indicated significant differences in the structure of sessile and mobile communities between dynamic and stable reef habitats. For sessile species, community structure in disturbed plots was less variable in space and time than in stable plots due to the maintenance of an early successional state. In contrast, community structure of mobile species varied more in disturbed plots than in stable plots, reflecting how mobile species distribute in response to sediment dynamics. Some species were found only in these disturbed areas, suggesting that the spatial mosaic of disturbance could increase regional diversity. We discuss how the relative ability of species to tolerate disturbance at different life history stages and their ability to colonize habitat translate into community-level differences among habitats, and how this response varies between mobile and sessile communities.

  1. Contribution of environmental and spatial processes to rocky intertidal metacommunity structure

    Science.gov (United States)

    Okuda, Takehiro; Noda, Takashi; Yamamoto, Tomoko; Hori, Masakazu; Nakaoka, Masahiro

    2010-07-01

    It has been debated whether the community structure of an open system is more dependent on environmental processes associated with niche explanations, or on spatial processes related to dispersal. Their relative importance may differ among taxonomic groups with properties of the community such as ecological characteristics (e.g., dispersal ability and life history) and habitat type. We examined the relative importance of environmental and spatial processes on community structure for three taxonomic groups with different ecological characteristics (macroalgae, sessile invertebrates, and mobile molluscs) in rocky intertidal shores of Sanriku Coast, Japan. To evaluate the relative contribution of the two processes in determining community structure, we conducted variation partitioning to reveal the degree of variation of community structure (i.e., β-diversity) explained by environmental heterogeneity and spatial arrangement of local communities. The results of our analyses indicated that β-diversity was significantly explained by both environmental factors (macroalgae, 29.3% of community variation: sessile animal, 40.7%: mobile molluscs, 16.7%) and spatial factors (macroalgae, 19.9%: sessile animal, 3.6%: mobile molluscs, 6.6%) in all taxonomic groups. These results imply that although some taxonomic groups live in the same ecosystem, share common resources, and interact with each other, the mechanisms determining their community structure change depending on ecological characteristics such as dispersal ability and life history.

  2. Biofilm formation on polystyrene in detached vs. planktonic cells of polyhydroxyalkanoate-accumulating Halomonas venusta.

    Science.gov (United States)

    Berlanga, Mercedes; Domènech, Òscar; Guerrero, Ricardo

    2014-12-01

    Biofilm development is characterized by distinct stages of initial attachment, microcolony formation and maturation (sessile cells), and final detachment (dispersal of new, planktonic cells). In this work we examined the influence of polyhydroxyalkanoate (PHA) accumulation on bacterial surface properties and biofilm formation on polystyrene in detached vs. planktonic cells of an environmental strain isolated from microbial mats, Halomonas venusta MAT28. This strain was cultured either in an artificial biofilm in which the cells were immobilized on alginate beads (sessile) or as free-swimming (planktonic) cells. For the two modes of growth, conditions allowing or preventing PHA accumulation were established. Cells detached from alginate beads and their planktonic counterparts were used to study cell surface properties and cellular adhesion on polystyrene. Detached cells showed a slightly higher affinity than planktonic cells for chloroform (Lewis-acid) and a greater hydrophobicity (affinity for hexadecane and hexane). Those surface characteristics of the detached cells may explain their better adhesion on polystyrene compared to planktonic cells. Adhesion to polystyrene was not significantly different between H. venusta cells that had accumulated PHA vs. those that did not. These observations suggest that the surface properties of detached cells clearly differ from those of planktonic cells and that for at least the first 48 h after detachment from alginate beads H. venusta retained the capacity of sessile cells to adhere to polystyrene and to form a biofilm. PMID:26421734

  3. Spatial niche facilitates clonal reproduction in seed plants under temporal disturbance.

    Science.gov (United States)

    Fukui, Shin; Araki, Kiwako S

    2014-01-01

    The evolutionary origins and advantages of clonal reproduction relative to sexual reproduction have been discussed for several taxonomic groups. In particular, organisms with a sessile lifestyle are often exposed to spatial and temporal environmental fluctuations. Thus, clonal propagation may be advantageous in such fluctuating environments, for sessile species that can reproduce both sexually and clonally. Here we introduce the concept of niche to a lattice space that changes spatially and temporally, by incorporating the compatibility between the characteristics of a sessile clonal plant with its habitat into a spatially explicit individual-based model. We evaluate the impact of spatially and temporally heterogeneous environments on the evolution of reproductive strategies: the optimal balance between seed and clonal reproduction of a clonal plant. The spatial niche case with local habitats led to avoidance of specialization in reproductive strategy, whereas stable environments or intensive environmental change tended to result in specialization in either clonal or seed reproduction under neutral conditions. Furthermore, an increase in spatial niches made clonal reproduction advantageous, as a consequence of competition among several genets under disturbed conditions, because a ramet reached a favorable habitat through a rare long-distance dispersal event via seed production. Thus, the existence of spatial niches could explain the advantages of clonal propagation.

  4. THALIACEANS, THE NEGLECTED PELAGIC RELATIVES OF ASCIDIANS: A DEVELOPMENTAL AND EVOLUTIONARY ENIGMA.

    Science.gov (United States)

    Piette, Jacques; Lemaire, Patrick

    2015-06-01

    Most developmental biologists equate tunicates to the sessile ascidians, including Ciona intestinalis, and the pelagic appendicularians, in particular Oikopleura dioica. However, there exists a third group of tunicates with a pelagic lifestyle, the thaliaceans, which include salps, pyrosomes, and doliolids. Although thaliaceans have raised the curiosity offamous zoologists since the 18th century, the difficulty of observing and experimentally manipulating them has led to many controversies and speculations about their life cycles and developmental strategies, the phylogenetic relationship within the group and with other tunicates, and the drivers of speciation in these widely distributed animals living in a seemingly uniform environment. Here, we take a historical perspective to summarize 250 years of work on this intriguing group of animals, and explore how modern genomics and imaging approaches are starting to solve fascinating evolutionary and developmental riddles. Recent molecular analyses support previous morphological evidence that ascidians are not monophyletic and that thaliaceans evolved from a sessile ascidian-like ancestor. In parallel, preliminary live-imaging and gene-expression data offer exciting entry points to understand how the adoption of a pelagic lifestyle led to drastic modifications in the morphology, embryology, and life cycle of these tunicates, compared to their sessile ancestor. PMID:26285352

  5. Microbial Nanoculture as an Artificial Microniche

    Science.gov (United States)

    Niepa, Tagbo H. R.; Hou, Likai; Jiang, Hongyuan; Goulian, Mark; Koo, Hyun; Stebe, Kathleen J.; Lee, Daeyeon

    2016-08-01

    Microbes self-organize in microcolonies while transitioning to a sessile form within a protective biofilm matrix. To enable the detailed study of microbial dynamics within these microcolonies, new sessile culture systems are needed that sequester cells and mimic their complex growth conditions and interactions. We present a new nanoliter-scale sessile culture system that is easily implemented via microfluidics-enabled fabrication. Hundreds of thousands of these nanocultures can be easily generated and imaged using conventional or confocal microscopy. Each nanoculture begins as a several nanoliter droplet of suspended cells, encapsulated by a polydimethylsiloxane (PDMS) membrane. The PDMS shell provides long-lasting mechanical support, enabling long term study, and is selectively permeable to small molecules including antibiotics, signaling molecules and functional fluorescent probes. Thus, as microcolonies mature within the nanocultures, they can be stressed or interrogated using selected probes to characterize cell physiological properties, antibiotic susceptibilities, and antagonistic interactions. We demonstrate this platform by investigating broad ranges of microcolony dynamics, including direct and indirect bacterial-fungal interactions. This versatile new tool has broad potential for addressing biological questions associated with drug resistance, chronic infections, microbiome dynamics, and antibiotic discovery.

  6. Down-regulation of IL-8 expression in human airway epithelial cells through helper-dependent adenoviral-mediated RNA interference

    Institute of Scientific and Technical Information of China (English)

    Huibi CAO; Anan WANG; Bernard MARTIN; David R.KOEHLER; Pamela L.ZEITLIN; A.Keith TANAWELL; Jim HU

    2005-01-01

    Interleukin (IL)-8 is a potent neutrophil chemotactic factor and a crucial mediator in neutrophil-dependent inflammation.Various cell types produce IL-8, either in response to external stimuli such as cytokines or bacterial infection, or after malignant transformation. Anti-IL-8 strategies have been considered for anti-inflammatory therapy. In this paper we demonstrate that the RNA interference technique can be used to efficiently down-regulate IL-8 protein expression in airway epithelial cells. We used a helper-dependent adenoviral vector to express a small hairpin (sh)RNA targeting human IL-8 in cultured airway epithelial cells (IB3-1, Cftr-/-; C38, Cftr-corrected) stimulated with TNF-α, IL-1 β or heat-inactivated Burkholderia cenocepacia. Stimulated IL-8 expression in IB3-1 and C38 cells was significantly reduced by shRNA expression. The shRNA targeting IL-8 had no effect on the activation of NF-κB, or on the protein levels of Iκ B or IL-6, suggesting that this anti-IL-8 strategy was highly specific, and therefore may offer potential for the treatment of inflammatory diseases.

  7. The melioidosis agent Burkholderia pseudomallei and related opportunistic pathogens detected in faecal matter of wildlife and livestock in northern Australia.

    Science.gov (United States)

    Höger, A C R; Mayo, M; Price, E P; Theobald, V; Harrington, G; Machunter, B; Choy, J Low; Currie, B J; Kaestli, M

    2016-07-01

    The Darwin region in northern Australia has experienced rapid population growth in recent years, and with it, an increased incidence of melioidosis. Previous studies in Darwin have associated the environmental presence of Burkholderia pseudomallei, the causative agent of melioidosis, with anthropogenic land usage and proximity to animals. In our study, we estimated the occurrence of B. pseudomallei and Burkholderia spp. relatives in faecal matter of wildlife, livestock and domestic animals in the Darwin region. A total of 357 faecal samples were collected and bacteria isolated through culture and direct DNA extraction after enrichment in selective media. Identification of B. pseudomallei, B. ubonensis, and other Burkholderia spp. was carried out using TTS1, Bu550, and recA BUR3-BUR4 quantitative PCR assays, respectively. B. pseudomallei was detected in seven faecal samples from wallabies and a chicken. B. cepacia complex spp. and Pandoraea spp. were cultured from wallaby faecal samples, and B. cenocepacia and B. cepacia were also isolated from livestock animals. Various bacteria isolated in this study represent opportunistic human pathogens, raising the possibility that faecal shedding contributes to the expanding geographical distribution of not just B. pseudomallei but other Burkholderiaceae that can cause human disease. PMID:26935879

  8. Anti-Biofilm and Immunomodulatory Activities of Peptides That Inhibit Biofilms Formed by Pathogens Isolated from Cystic Fibrosis Patients.

    Science.gov (United States)

    de la Fuente-Núñez, César; Mansour, Sarah C; Wang, Zhejun; Jiang, Lucy; Breidenstein, Elena B M; Elliott, Melissa; Reffuveille, Fany; Speert, David P; Reckseidler-Zenteno, Shauna L; Shen, Ya; Haapasalo, Markus; Hancock, Robert E W

    2014-01-01

    Cystic fibrosis (CF) patients often acquire chronic respiratory tract infections due to Pseudomonas aeruginosa and Burkholderia cepacia complex (Bcc) species. In the CF lung, these bacteria grow as multicellular aggregates termed biofilms. Biofilms demonstrate increased (adaptive) resistance to conventional antibiotics, and there are currently no available biofilm-specific therapies. Using plastic adherent, hydroxyapatite and flow cell biofilm models coupled with confocal and scanning electron microscopy, it was demonstrated that an anti-biofilm peptide 1018 prevented biofilm formation, eradicated mature biofilms and killed biofilms formed by a wide range of P. aeruginosa and B. cenocepacia clinical isolates. New peptide derivatives were designed that, compared to their parent peptide 1018, showed similar or decreased anti-biofilm activity against P. aeruginosa biofilms, but increased activity against biofilms formed by the Gram-positive bacterium methicillin resistant Staphylococcus aureus. In addition, some of these new peptide derivatives retained the immunomodulatory activity of 1018 since they induced the production of the chemokine monocyte chemotactic protein-1 (MCP-1) and suppressed lipopolysaccharide-mediated tumor necrosis factor-α (TNF-α) production by human peripheral blood mononuclear cells (PBMC) and were non-toxic towards these cells. Peptide 1018 and its derivatives provide promising leads for the treatment of chronic biofilm infections and hyperinflammatory lung disease in CF patients.

  9. Anti-Biofilm and Immunomodulatory Activities of Peptides That Inhibit Biofilms Formed by Pathogens Isolated from Cystic Fibrosis Patients

    Directory of Open Access Journals (Sweden)

    César de la Fuente-Núñez

    2014-10-01

    Full Text Available Cystic fibrosis (CF patients often acquire chronic respiratory tract infections due to Pseudomonas aeruginosa and Burkholderia cepacia complex (Bcc species. In the CF lung, these bacteria grow as multicellular aggregates termed biofilms. Biofilms demonstrate increased (adaptive resistance to conventional antibiotics, and there are currently no available biofilm-specific therapies. Using plastic adherent, hydroxyapatite and flow cell biofilm models coupled with confocal and scanning electron microscopy, it was demonstrated that an anti-biofilm peptide 1018 prevented biofilm formation, eradicated mature biofilms and killed biofilms formed by a wide range of P. aeruginosa and B. cenocepacia clinical isolates. New peptide derivatives were designed that, compared to their parent peptide 1018, showed similar or decreased anti-biofilm activity against P. aeruginosa biofilms, but increased activity against biofilms formed by the Gram-positive bacterium methicillin resistant Staphylococcus aureus. In addition, some of these new peptide derivatives retained the immunomodulatory activity of 1018 since they induced the production of the chemokine monocyte chemotactic protein-1 (MCP-1 and suppressed lipopolysaccharide-mediated tumor necrosis factor-α (TNF-α production by human peripheral blood mononuclear cells (PBMC and were non-toxic towards these cells. Peptide 1018 and its derivatives provide promising leads for the treatment of chronic biofilm infections and hyperinflammatory lung disease in CF patients.

  10. Structural Features Essential to the Antimicrobial Functions of Human SPLUNC1.

    Science.gov (United States)

    Walton, William G; Ahmad, Saira; Little, Michael S; Kim, Christine S K; Tyrrell, Jean; Lin, Qiao; Di, Y Peter; Tarran, Robert; Redinbo, Matthew R

    2016-05-31

    SPLUNC1 is an abundantly secreted innate immune protein in the mammalian respiratory tract that exerts bacteriostatic and antibiofilm effects, binds to lipopolysaccharide (LPS), and acts as a fluid-spreading surfactant. Here, we unravel the structural elements essential for the surfactant and antimicrobial functions of human SPLUNC1 (short palate lung nasal epithelial clone 1). A unique α-helix (α4) that extends from the body of SPLUNC1 is required for the bacteriostatic, surfactant, and LPS binding activities of this protein. Indeed, we find that mutation of just four leucine residues within this helical motif to alanine is sufficient to significantly inhibit the fluid spreading abilities of SPLUNC1, as well as its bacteriostatic actions against Gram-negative pathogens Burkholderia cenocepacia and Pseudomonas aeruginosa. Conformational flexibility in the body of SPLUNC1 is also involved in the bacteriostatic, surfactant, and LPS binding functions of the protein as revealed by disulfide mutants introduced into SPLUNC1. In addition, SPLUNC1 exerts antibiofilm effects against Gram-negative bacteria, although α4 is not involved in this activity. Interestingly, though, the introduction of surface electrostatic mutations away from α4 based on the unique dolphin SPLUNC1 sequence, and confirmed by crystal structure, is shown to impart antibiofilm activity against Staphylococcus aureus, the first SPLUNC1-dependent effect against a Gram-positive bacterium reported to date. Together, these data pinpoint SPLUNC1 structural motifs required for the antimicrobial and surfactant actions of this protective human protein. PMID:27145151

  11. Antibiotic resistance in Burkholderia species.

    Science.gov (United States)

    Rhodes, Katherine A; Schweizer, Herbert P

    2016-09-01

    The genus Burkholderia comprises metabolically diverse and adaptable Gram-negative bacteria, which thrive in often adversarial environments. A few members of the genus are prominent opportunistic pathogens. These include Burkholderia mallei and Burkholderia pseudomallei of the B. pseudomallei complex, which cause glanders and melioidosis, respectively. Burkholderia cenocepacia, Burkholderia multivorans, and Burkholderia vietnamiensis belong to the Burkholderia cepacia complex and affect mostly cystic fibrosis patients. Infections caused by these bacteria are difficult to treat because of significant antibiotic resistance. The first line of defense against antimicrobials in Burkholderia species is the outer membrane penetration barrier. Most Burkholderia contain a modified lipopolysaccharide that causes intrinsic polymyxin resistance. Contributing to reduced drug penetration are restrictive porin proteins. Efflux pumps of the resistance nodulation cell division family are major players in Burkholderia multidrug resistance. Third and fourth generation β-lactam antibiotics are seminal for treatment of Burkholderia infections, but therapeutic efficacy is compromised by expression of several β-lactamases and ceftazidime target mutations. Altered DNA gyrase and dihydrofolate reductase targets cause fluoroquinolone and trimethoprim resistance, respectively. Although antibiotic resistance hampers therapy of Burkholderia infections, the characterization of resistance mechanisms lags behind other non-enteric Gram-negative pathogens, especially ESKAPE bacteria such as Acinetobacter baumannii, Klebsiella pneumoniae and Pseudomonas aeruginosa. PMID:27620956

  12. BACTERIA CARRIED BY CHRYSOMYA MEGACEPHALA (FABRICIUS, 1794 (DIPTERA: CALLIPHORIDAE IN SINOP, MATO GROSSO, BRAZIL

    Directory of Open Access Journals (Sweden)

    J. S. Carneiro

    2014-07-01

    Full Text Available Chrysomya megacephala (Diptera: Calliphoridae, popularly known as blowfly, has a great capacity for dispersion and, due to factors such as food abundance and favorable climate, it colonizes Brazil completely in a short time. These insects are important to the sectors of epidemiology, public health and forensics, especially due to carrying microorganisms such as bacteria, viruses, protozoa and helminthes, which are responsible for the spread of diseases such as dysentery, cholera, botulism, typhoid fever, brucellosis, polio, smallpox and tuberculosis. The objective of this study was to verify the diversity of bacteria carried by this species in the Federal University of Mato Grosso – Campus of Sinop during the month of January of 2012. The flies were collected using two traps baited with 100 g of fresh sardines on each and maintained in the field for 24 hours. Twenty specimens of C. megacephala were placed in Petri dishes, to walk for two minutes upon Nutrient Agar (NA. After establishment of the colonies, isolation of the bacteria on the NA medium and their multiplication in test tubes containing the same culture medium was performed, and later sent to identification by gas chromatography. The bacteria encountered were Aquaspirillum polymorphum; Burkholderia ambifaria; Burkholderia anthina; Burkholderia cepacia; Burkholderia cenocepacia; Burkholderia pyrrocinia; Burkholderia stabilis; Paenibacillus macerans; Virgibacillus pantothenticus, Bacillus subtilis e Photorhabdus luminescens luminescens, with the last two species considered of importance in the plant protection sector.

  13. Investigations of the surface tension of coal ash slags under gasification conditions; Untersuchungen zur Oberflaechenspannung von Kohleschlacken unter Vergasungsbedingungen

    Energy Technology Data Exchange (ETDEWEB)

    Melchior, Tobias

    2011-10-26

    In the context of CO{sub 2}-emission-induced global warming, greenhouse gases resulting from the production of electricity in coal-fired power plants gain increasing attention. One possible way to reduce such emissions is to gasify coal instead of burning it. The corresponding process is referred to as Integrated Gasification Combined Cycle and allows for the separation of CO{sub 2} before converting a synthesis gas into electrical energy. However, further improvements in efficiency and availability of this plant technology are needed to render the alternative generation of electricity sensible from an economic point of view. One corresponding approach introduces hot gas cleaning facilities to the gasification plant which guarantee a removal of slag particles from the synthesis gas at high temperatures. The development of such filters depends on the availability of data on the material properties of the coal ash slags to be withdrawn. In this respect, the surface tension is a relevant characteristic. Currently, the surface tension of real coal ash slags as well as of synthetic model systems was measured successfully by means of the sessile drop and the maximum bubble pressure method. With regard to the sessile drop technique, those experiments were conducted in a gasification-like atmosphere at temperatures of up to 1500 C. Furthermore, the pressure inside the experimental vessel was raised to 10 bar in order to allow for deriving the influence of this variable on the surface tension. In contrast, maximum bubble pressure trials were realised at atmospheric pressure while the gas atmosphere assured inert conditions. For performing sessile drop measurements, a corresponding apparatus was set up and is described in detail in this thesis. Three computer algorithms were employed to calculate surface tensions out of the photos of sessile drops and their individual performance was evaluated. A very good agreement between two of the codes was found while the third one

  14. Paradoxical antifungal activity and structural observations in biofilms formed by echinocandin-resistant Candida albicans clinical isolates.

    Science.gov (United States)

    Walraven, Carla J; Bernardo, Stella M; Wiederhold, Nathan P; Lee, Samuel A

    2014-02-01

    Echinocandin-resistant clinical isolates of Candida albicans have been reported, and key-hot spot mutations in the FKS1 gene, which encodes a major glucan synthase subunit, have been identified in these (caspofungin-resistant [CAS-R]) strains. Although these mutations result in phenotypic resistance to echinocandins in planktonic cells, there is little data on antifungal susceptibilities of CAS-R C. albicans strains within biofilms. Thus, we analyzed biofilms formed by 12 C. albicans CAS-R clinical strains in which we previously identified FKS1 hot-spot mutations and compared the sessile antifungal and paradoxical activity of anidulafungin (ANID), caspofungin (CAS), and micafungin (MICA). Biofilms were formed in a 96-well static microplate model and assayed using both tetrazolium-salt reduction and crystal violet assays, as well as examination by scanning electron microscopy. We first sought to assess biofilm formation and structure in these fks1 mutants and found that the biofilm mass and metabolic activities were reduced in most of the fks1 mutants as compared with reference strain SC5314. Structural analyses revealed that the fks1 mutant biofilms were generally less dense and had a clear predominance of yeast and pseudohyphae, with unusual "pit"-like cell surface structures. We also noted that sessile minimum inhibitory concentrations (MICs) to ANID, CAS, and MICA were higher than planktonic MICs of all but one strain. The majority of strains demonstrated a paradoxical effect (PE) to particular echinocandins, in either planktonic or sessile forms. Overall, biofilms formed by echinocandin-resistant clinical isolates demonstrated varied PEs to echinocandins and were structurally characterized by a preponderance of yeast, pseudohyphae, and pit-like structures.

  15. Mucocutaneous lesions in free-ranging Atlantic bottlenose dolphins Tursiops truncatus from the southeastern USA.

    Science.gov (United States)

    Bossart, Gregory D; Schaefer, Adam M; McCulloch, Stephen; Goldstein, Juli; Fair, Patricia A; Reif, John S

    2015-08-20

    Mucocutaneous lesions were biopsied from free-ranging Atlantic bottlenose dolphins Tursiops truncatus inhabiting the Indian River Lagoon (IRL), Florida, and estuarine waters of Charleston (CHS), South Carolina, USA, between 2003 and 2013. A total of 78 incisional biopsies from 58 dolphins (n=43 IRL, n=15 CHS) were examined. Thirteen dolphins had 2 lesions biopsied at the same examination, and 6 dolphins were re-examined and re-biopsied at time intervals varying from 1 to 8 yr. Biopsy sites included the skin (n=47), tongue (n=2), and genital mucosa (n=29). Pathologic diagnoses were: orogenital sessile papilloma (39.7%), cutaneous lobomycosis (16.7%), tattoo skin disease (TSD; 15.4%), nonspecific chronic to chronic-active dermatitis (15.4%), and epidermal hyperplasia (12.8%). Pathologic diagnoses from dolphins with 2 lesions were predominately orogenital sessile papillomas (n=9) with nonspecific chronic to chronic-active dermatitis (n=4), TSD (n=3), lobomycosis (n=1), and epidermal hyperplasia (n=1). Persistent pathologic diagnoses from the same dolphins re-examined and re-biopsied at different times included genital sessile papillomas (n=3), lobomycosis (n=2), and nonspecific dermatitis (n=2). This is the first study documenting the various types, combined prevalence, and progression of mucocutaneous lesions in dolphins from the southeastern USA. The data support other published findings describing the health patterns in dolphins from these geographic regions. Potential health impacts related to the observed suite of lesions are important for the IRL and CHS dolphin populations, since previous studies have indicated that both populations are affected by complex infectious diseases often associated with immunologic disturbances and anthropogenic contaminants. PMID:26290502

  16. Success in Competition for Space in Two Invasive Coral Species in the western Atlantic - Tubastraea micranthus and T. coccinea.

    Science.gov (United States)

    Sammarco, Paul W; Porter, Scott A; Genazzio, Melissa; Sinclair, James

    2015-01-01

    Invasion success by an alien species is dependent upon rate of reproduction, growth, mortality, physical characteristics of the environment, and successful competition for resources with native species. For sessile, epibenthic marine species, one critical resource is space. We examined competitive success in two invasive Indo-Pacific corals involved in competition for space in the northern Gulf of Mexico-Tubastraea coccinea and T. micranthus-on up to 13 offshore oil/gas platforms south of the Mississippi River. Still-capture photos of thousands of overgrowth interactions between the target corals and other sessile epibenthic fauna were analyzed from ROV videos collected at 8-183 m depth. T. micranthus was observed overgrowing >90% of all sessile epibenthic species which it encountered. Frequencies of competitive success varied significantly between platforms. T. coccinea was competitively superior to all competitors pooled, at the 60% level. There was little variability between T. coccinea populations. T. coccinea encountered the following species most frequently-the encrusting sponges Xestospongia sp. (with the commensal Parazoanthus catenularis), X. carbonaria, Dictyonella funicularis, Mycale carmigropila, Phorbas amaranthus, and Haliclona vansoesti-and was found to be, on average, competitively superior to them. Both T. micranthus and T. coccinea appear to be good competitors for space against these species in the northern Gulf of Mexico. Competitive success in T. micranthus was highest in the NE part of the study area, and lowest in the SW area near the Mississippi River plume. T. coccinea's competitive success peaked in the SW study area. This suggests that variation in competitive success both within and between populations of these species may be due to differences in local environmental factors. PMID:26684321

  17. Strongly coupled interaction between a ridge of fluid and an inviscid airflow

    KAUST Repository

    Paterson, C.

    2015-07-01

    © 2015 AIP Publishing LLC. The behaviour of a steady thin sessile or pendent ridge of fluid on an inclined planar substrate which is strongly coupled to the external pressure gradient arising from an inviscid airflow parallel to the substrate far from the ridge is described. When the substrate is nearly horizontal, a very wide ridge can be supported against gravity by capillary and/or external pressure forces; otherwise, only a narrower (but still wide) ridge can be supported. Classical thin-aerofoil theory is adapted to obtain the governing singular integro-differential equation for the profile of the ridge in each case. Attention is focused mainly on the case of a very wide sessile ridge. The effect of strengthening the airflow is to push a pinned ridge down near to its edges and to pull it up near to its middle. At a critical airflow strength, the upslope contact angle reaches the receding contact angle at which the upslope contact line de-pins, and continuing to increase the airflow strength beyond this critical value results in the de-pinned ridge becoming narrower, thicker, and closer to being symmetric in the limit of a strong airflow. The effect of tilting the substrate is to skew a pinned ridge in the downslope direction. Depending on the values of the advancing and receding contact angles, the ridge may first de-pin at either the upslope or the downslope contact line but, in general, eventually both contact lines de-pin. The special cases in which only one of the contact lines de-pins are also considered. It is also shown that the behaviour of a very wide pendent ridge is qualitatively similar to that of a very wide sessile ridge, while the important qualitative difference between the behaviour of a very wide ridge and a narrower ridge is that, in general, for the latter one or both of the contact lines may never de-pin.

  18. Biodiversity of Spongosorites coralliophaga (Stephens, 1915) on coral rubble at two contrasting cold-water coral reef settings

    Science.gov (United States)

    Kazanidis, Georgios; Henry, Lea-Anne; Roberts, J. Murray; Witte, Ursula F. M.

    2016-03-01

    Cold-water coral reefs (CWRs) in the northeast Atlantic harbor diverse sponge communities. Knowledge of deep-sea sponge ecology is limited and this leaves us with a fragmented understanding of the ecological roles that sponges play in CWR ecosystems. We present the first study of faunal biodiversity associated with the massive demosponge Spongosorites coralliophaga (Stephens, 1915) that typically colonizes coral debris fields of CWRs. Our study focused on the sessile fauna inhabiting sponges mixed with coral rubble at two contrasting settings in the northeast Atlantic: the shallow inshore (120-190 m water depth) Mingulay Reef Complex (MRC) and the deep offshore (500-1200 m) Logachev Mound (LM) coral province. MRC is dominated by the scleractinian Lophelia pertusa, while LM is dominated by L. pertusa and Madrepora oculata. Nine sponge-coral rubble associations were collected from MRC and four from LM. Measurements of abundance, species richness, diversity, evenness, dry biomass, and composition of sessile fauna on sponge and coral rubble microhabitats were undertaken. Differences in community composition between the two regions were mainly a response to changes in fauna with depth. Fauna composition was also different between sponge and coral rubble within each region. Infauna constituted a minor component of the sponge-associated fauna in MRC but had a higher contribution in LM. Sponge and coral rubble sessile fauna in both regions was mainly composed of cnidarians and molluscs, similarly to some previous studies. Sponges' outer surfaces at MRC were colonized by a species-rich community with high abundance and biomass suggesting that S. coralliophaga at MRC acts as a settlement surface for various organisms but such a role is not the case at LM. This difference in the role of S. coralliophaga as a biological structure is probably related to differences in fauna composition with depth, bottom current speed, and the quantity/quality of food supplied to the benthos.

  19. Paradoxical antifungal activity and structural observations in biofilms formed by echinocandin-resistant Candida albicans clinical isolates.

    Science.gov (United States)

    Walraven, Carla J; Bernardo, Stella M; Wiederhold, Nathan P; Lee, Samuel A

    2014-02-01

    Echinocandin-resistant clinical isolates of Candida albicans have been reported, and key-hot spot mutations in the FKS1 gene, which encodes a major glucan synthase subunit, have been identified in these (caspofungin-resistant [CAS-R]) strains. Although these mutations result in phenotypic resistance to echinocandins in planktonic cells, there is little data on antifungal susceptibilities of CAS-R C. albicans strains within biofilms. Thus, we analyzed biofilms formed by 12 C. albicans CAS-R clinical strains in which we previously identified FKS1 hot-spot mutations and compared the sessile antifungal and paradoxical activity of anidulafungin (ANID), caspofungin (CAS), and micafungin (MICA). Biofilms were formed in a 96-well static microplate model and assayed using both tetrazolium-salt reduction and crystal violet assays, as well as examination by scanning electron microscopy. We first sought to assess biofilm formation and structure in these fks1 mutants and found that the biofilm mass and metabolic activities were reduced in most of the fks1 mutants as compared with reference strain SC5314. Structural analyses revealed that the fks1 mutant biofilms were generally less dense and had a clear predominance of yeast and pseudohyphae, with unusual "pit"-like cell surface structures. We also noted that sessile minimum inhibitory concentrations (MICs) to ANID, CAS, and MICA were higher than planktonic MICs of all but one strain. The majority of strains demonstrated a paradoxical effect (PE) to particular echinocandins, in either planktonic or sessile forms. Overall, biofilms formed by echinocandin-resistant clinical isolates demonstrated varied PEs to echinocandins and were structurally characterized by a preponderance of yeast, pseudohyphae, and pit-like structures. PMID:24576999

  20. Effect of growth on the thermal resistance and survival of Salmonella Tennessee and Oranienburg in peanut butter, measured by a new thin-layer thermal death time device.

    Science.gov (United States)

    Keller, Susanne E; Grasso, Elizabeth M; Halik, Lindsay A; Fleischman, Gregory J; Chirtel, Stuart J; Grove, Stephen F

    2012-06-01

    In published data the thermal destruction of Salmonella species in peanut butter deviates from pseudo-first-order kinetics. The reasons for such deviation are unknown. This study examined both the method used to measure the thermal destruction rate and the method of growth of the microorganisms to explain variations in destruction kinetics. Growth on a solid matrix results in a different physiological state that may provide greater resistance to adverse environments. In this study, Salmonella Tennessee and Oranienburg were grown for 24 h at 37°C under aerobic conditions in broth and agar media to represent planktonic and sessile cell growth, respectively. Peanut butter was held at 25°C and tested for Salmonella levels immediately after inoculation and at various time intervals up to 2 weeks. Thermal resistance was measured at 85°C by use of a newly developed thin-layer metal sample holder. Although thermal heat transfer through the metal device resulted in longer tau values than those obtained with plastic bags (32.5 ± 0.9 versus 12.4 ± 1.9 s), the bags have a relative variability of about 15 % compared with about 3 % in the plates, allowing improved uniformity of sample treatment. The two serovars tested in the thin-layer device showed similar overall thermal resistance levels in peanut butter regardless of growth in sessile or planktonic states. However, thermal destruction curves from sessile cultures exhibited greater linearity than those obtained from planktonic cells (P = 0.0198 and 0.0047 for Salmonella Oranienburg and Salmonella Tennessee, respectively). In addition, both Salmonella serovars showed significantly higher survival in peanut butter at 25°C when originally grown on solid media (P = 0.001) with a environment such as peanut butter. PMID:22691482

  1. Success in Competition for Space in Two Invasive Coral Species in the western Atlantic – Tubastraea micranthus and T. coccinea

    Science.gov (United States)

    Sammarco, Paul W.; Porter, Scott A.; Genazzio, Melissa; Sinclair, James

    2015-01-01

    Invasion success by an alien species is dependent upon rate of reproduction, growth, mortality, physical characteristics of the environment, and successful competition for resources with native species. For sessile, epibenthic marine species, one critical resource is space. We examined competitive success in two invasive Indo-Pacific corals involved in competition for space in the northern Gulf of Mexico—Tubastraea coccinea and T. micranthus—on up to 13 offshore oil/gas platforms south of the Mississippi River. Still-capture photos of thousands of overgrowth interactions between the target corals and other sessile epibenthic fauna were analyzed from ROV videos collected at 8–183 m depth. T. micranthus was observed overgrowing >90% of all sessile epibenthic species which it encountered. Frequencies of competitive success varied significantly between platforms. T. coccinea was competitively superior to all competitors pooled, at the 60% level. There was little variability between T. coccinea populations. T. coccinea encountered the following species most frequently—the encrusting sponges Xestospongia sp. (with the commensal Parazoanthus catenularis), X. carbonaria, Dictyonella funicularis, Mycale carmigropila, Phorbas amaranthus, and Haliclona vansoesti—and was found to be, on average, competitively superior to them. Both T. micranthus and T. coccinea appear to be good competitors for space against these species in the northern Gulf of Mexico. Competitive success in T. micranthus was highest in the NE part of the study area, and lowest in the SW area near the Mississippi River plume. T. coccinea’s competitive success peaked in the SW study area. This suggests that variation in competitive success both within and between populations of these species may be due to differences in local environmental factors. PMID:26684321

  2. Success in Competition for Space in Two Invasive Coral Species in the western Atlantic - Tubastraea micranthus and T. coccinea.

    Directory of Open Access Journals (Sweden)

    Paul W Sammarco

    Full Text Available Invasion success by an alien species is dependent upon rate of reproduction, growth, mortality, physical characteristics of the environment, and successful competition for resources with native species. For sessile, epibenthic marine species, one critical resource is space. We examined competitive success in two invasive Indo-Pacific corals involved in competition for space in the northern Gulf of Mexico-Tubastraea coccinea and T. micranthus-on up to 13 offshore oil/gas platforms south of the Mississippi River. Still-capture photos of thousands of overgrowth interactions between the target corals and other sessile epibenthic fauna were analyzed from ROV videos collected at 8-183 m depth. T. micranthus was observed overgrowing >90% of all sessile epibenthic species which it encountered. Frequencies of competitive success varied significantly between platforms. T. coccinea was competitively superior to all competitors pooled, at the 60% level. There was little variability between T. coccinea populations. T. coccinea encountered the following species most frequently-the encrusting sponges Xestospongia sp. (with the commensal Parazoanthus catenularis, X. carbonaria, Dictyonella funicularis, Mycale carmigropila, Phorbas amaranthus, and Haliclona vansoesti-and was found to be, on average, competitively superior to them. Both T. micranthus and T. coccinea appear to be good competitors for space against these species in the northern Gulf of Mexico. Competitive success in T. micranthus was highest in the NE part of the study area, and lowest in the SW area near the Mississippi River plume. T. coccinea's competitive success peaked in the SW study area. This suggests that variation in competitive success both within and between populations of these species may be due to differences in local environmental factors.

  3. Dynamic behavior of polymer surface and the time dependence of contact angle

    Institute of Scientific and Technical Information of China (English)

    WANG Xinping; CHEN Zhifang; SHEN Zhiquan

    2005-01-01

    Time-dependent contact angles were measured by depositing sessile drops of water on the polymer surfaces and monitoring the drop shape as a function of time. It was found that contact angles decreased sharply with contact time and the equilibrium contact angle was finally attained after a certain time. Values of starting (θs) and equilibrium contact angles (θe) obtained by the sessile drop method depend on polymer properties. The Wilhelmy plate technique was used to measure advancing and receding contact angles. The variations of starting (θs) and equilibrium contact angles (θe), advancing (θa) and receding contact angles (θr) have been studied on the oxidized surface of polymers containing polybutadiene block to explore the cause of time-dependence in contact angle measurement and the meaning of θs and θe. The results showed the linear relationships between starting (θs) and advancing contact angles (θa), the equilibrium (θe) and receding contact angles (θr). The similar relationship was also established between the contact angle hysteresis (θa-θr) and differences (θs-θe) in starting contact angles and equilibrium contact angles. Therefore, time-dependence in contact angle measurement was mainly attributed to the surface reconstruction when water drops were deposited on polymer surfaces. The starting contact angle was contributed by the hydrophobic component on polymer surface and the equilibrium contact angle mainly by the hydrophilic component of polymer. These results not only demonstrated the interdependency between two contact angle measurements, the sessile drop method and the Wilhelmy plate technique, but also provided the experimental evidence to explain the cause of time-dependent contact angle. This may also provide a new method to study dynamic behavior of polymer surface.

  4. Efficacy of intravascular catheter lock solutions containing preservatives in the prevention of microbial colonization.

    Science.gov (United States)

    Shenep, L E; Shenep, M A; Cheatham, W; Hoffman, J M; Hale, A; Williams, B F; Perkins, R; Hewitt, C B; Hayden, R T; Shenep, J L

    2011-12-01

    There is little published evidence regarding whether heparin lock solutions containing preservatives prevent catheter-related infections. However, adverse effects from preservative-containing flushes have been documented in neonates, leading many hospitals to avoid their use altogether. Infection control records from 1982 to 2008 at St. Jude Children's Research Hospital (SJCRH) were reviewed regarding the incidence of catheter-related infections and the use of preservative-containing intravenous locks. In addition, the antimicrobial activities of heparin lock solution containing the preservatives parabens (0.165%) or benzyl alcohol (0.9%), and 70% ethanol were examined against Staphylococcus epidermidis, Staphylococcus aureus, Escherichia coli, Bacillus cereus, Pseudomonas aeruginosa and Candida albicans, and compared with preservative-free saline with and without heparin. Growth was assessed after exposure to test solutions for 0, 2, 4 and 24h at 35 °C. The activities of preservatives were assessed against both planktonic (free-floating) and sessile (biofilm-embedded) micro-organisms using the MBEC Assay. Infection control records revealed two periods of increased catheter-related infections, corresponding with two intervals when preservative-free heparin was used at SJCRH. Heparin solution containing preservatives demonstrated significant antimicrobial activity against both planktonic and sessile forms of all six microbial species. Ethanol demonstrated the greatest antimicrobial activity, especially following short incubation periods. Heparin lock solutions containing the preservatives parabens or benzyl alcohol, and 70% ethanol demonstrated significant antimicrobial activity against both planktonic and sessile micro-organisms commonly responsible for catheter-related infections. These findings, together with the authors' historical infection control experience, support the use of preservatives in intravenous lock solutions to reduce catheter related infections

  5. Effect of Sanding on Surface Properties of Medium Density Fiberboard

    OpenAIRE

    Nadir Ayrilmis, Zeki Candan, Turgay Akbulut, Ozgur Balkiz

    2010-01-01

    The objective of this research was to investigate the effects of sanding on the surface properties of the medium density fiberboard (MDF) panels made from Rhododendron ponticum L. wood. The MDF panels were sanded with different sizes of the sand paper grit: 60-, 60+80- or 60+80+120-grit. Surface absorption and surface roughness of the MDF panels were determined based on EN 382-1 standard and ISO 4287 by using a fi ne stylus profi lometer, respectively. Sessile water drop technique was used to...

  6. Ultrasonic treatment for microbiological control of water systems

    International Nuclear Information System (INIS)

    A combination treatment of shear, micro-bubbles, and high-frequency low-power ultrasound introduced via side-stream treatment of industrial water systems has shown excellent results in controlling bacteria and algae; Through the physical, high-stress environment created by ultrasonic waves, sessile and planktonic biological populations, some of which may undergo programmed cell death (PCD), can be controlled. Additionally, the instability and reduction of biofilm have been observed in systems treated by ultrasound and may be attributed to starvation-stress and lack of available cross-linking cations in the biofilm. (authors)

  7. Wetting and Interfacial Characteristics of Mg AZ61 Alloy/Galvanized Steel in Cold Metal Transfer Process

    Science.gov (United States)

    Lin, Qiaoli; Yang, Fan; Cao, Rui; Chen, Jianhong; Guo, Tingbiao

    2015-09-01

    The dynamic sessile drop method was used to study the wetting behavior of galvanized steel by molten Mg AZ61 alloy under cold metal transfer condition. The interfacial microstructures were also analyzed by using scanning electron microscope and energy dispersive spectrometry. The observed results showed that the wetting behavior was directly determined by the wire feed speed (or the heat input). The Al-Fe intermetallic layer and Zn-rich zone were observed both at the interface and at the close of triple line. The formations of these interfacial characteristics satisfy the thermodynamic characteristic of Mg-Al/Fe and Mg-Zn/Fe systems.

  8. Gallbladder villous adenoma in a patient with acromegaly: A case report

    Institute of Scientific and Technical Information of China (English)

    Miodrag Krstic; Tamara Alempijevic; Bojan Stimec; Marjan Micev; Miroslav Milicevic; Dragan Micic; Goran Jankovic

    2007-01-01

    Villous adenomas are benign epithelial lesions with malignant potential that can occur in any part of the gastrointestinal tract. We present a case of a middle age woman with acromegaly who was investigated for nonspecific gastrointestinal complaints. Ultrasonography and subsequent endosonography diagnosed a large (4.5 cm), hyperechoic, sessile polyp with numerous pedicles. An open cholecystectomy was performed and revealed a villous adenoma with several foci of carcinoma in situ. Detailed investigations showed no other tumors of the gastrointestinal tract. After five years of follow-up, the patient reports no complaints, and the results of laboratory testing and imaging studies are within the normal range.

  9. Characterization of film surface treated with ECR plasma by Doppler broadening

    CERN Document Server

    Nishijima, S; Hirata, K; Kobayashi, Y; Honda, Y; Tagawa, S

    2000-01-01

    Doppler broadened positron annihilation measurements were carried out using the positron beam technique on plasma treated polyethylene films as a function of incident positron energy. In addition, surface properties of the treated films also have been measured using other conventional techniques such as FT-IR, SEM and AFM. The surface tension of the films was also determined using sessile drop method. The S-parameter is seen to decrease on the surface upon plasma treatment that introduces polar groups such as hydroxyl and carbonyl on the surface. The results are discussed.

  10. Soil-Water Repellency Characteristic Curves for Soil Profiles with Organic Carbon Gradients

    DEFF Research Database (Denmark)

    Wijewardana, Nadeeka Senani; Muller, Karin; Moldrup, Per;

    2016-01-01

    Soil water repellency (SWR) of soils is a property with significant consequences for agricultural water management, water infiltration, contaminant transport, and for soil erosion. It is caused by the presence of hydrophobic agents on mineral grain surfaces. Soils were samples in different depths......, and the sessile drop method (SDM). The aim to (i) compare the methods, (ii) characterize the soil-water repellency characteristic curves (SWRCC) being SWR as a function of the volumetric soil-water content (θ) or matric potential (ψ), and (iii) find relationships between SWRCC parameters and SOC content. The WDPT...

  11. Requirement of the Carboxyl Terminus of a Bacterial Chemoreceptor for Its Targeted Proteolysis

    Science.gov (United States)

    Alley, M. R. K.; Maddock, Janine R.; Shapiro, Lucille

    1993-03-01

    The bacterium Caulobacter crescentus yields two different progeny at each cell division; a chemotactically competent swarmer cell and a sessile stalked cell. The chemotaxis proteins are synthesized in the predivisional cell and then partition only to the swarmer cell upon division. The chemoreceptors that were newly synthesized were located at the nascent swarmer pole of the predivisional cell, an indication that asymmetry was established prior to cell division. When the swarmer cell differentiated into a stalked cell, the chemoreceptor was specifically degraded by virtue of an amino acid sequence located at its carboxyl terminus. Thus, a temporally and spatially restricted proteolytic event was a component of this differentiation process.

  12. Verruciform xanthoma of the penis:report of a case

    Institute of Scientific and Technical Information of China (English)

    夏同礼; 李贵忠; 那彦群; 郭应禄

    2004-01-01

    @@ Verruciform xanthoma, a rare and benign lesion that was first described by Shafer1 in 1971, occurs mainly in the oral mucosa, but extra-oral involvement includes the vulva,2,3 scrotum,4,5 penis,6-15 anal region16 and extremities.17,18 With sessile or pedunculated growth this lesion is small, asymptomatic, yellow-brown or red-orange in color, and flat. Clinically, verruciform xanthoma is likely to be misdiagnosed as papillomas and occasionally as verrucous or squamous cell carcinoma. It has a benign course and good prognosis. We report a case of verruciform xanthoma that occurred in the penis, a very rare location.

  13. Surface tension of liquid metals and alloys--recent developments.

    Science.gov (United States)

    Egry, I; Ricci, E; Novakovic, R; Ozawa, S

    2010-09-15

    Surface tension measurements are a central task in the study of surfaces and interfaces. For liquid metals, they are complicated by the high temperatures and the consequently high reactivity characterising these melts. In particular, oxidation of the liquid surface in combination with evaporation phenomena requires a stringent control of the experimental conditions, and an appropriate theoretical treatment. Recently, much progress has been made on both sides. In addition to improving the conventional sessile drop technique, new containerless methods have been developed for surface tension measurements. This paper reviews the experimental progress made in the last few years, and the theoretical framework required for modelling and understanding the relevant physico-chemical surface phenomena.

  14. Superhydrophobic surfaces using selected zinc oxide microrod growth on ink-jetted patterns.

    Science.gov (United States)

    Myint, Myo Tay Zar; Kitsomboonloha, Rungrot; Baruah, Sunandan; Dutta, Joydeep

    2011-02-15

    The synthesis and properties of superhydrophobic surfaces based on binary surface topography made of zinc oxide (ZnO) microrod-decorated micropatterns are reported. ZnO is intrinsically hydrophilic but can be utilized to create hydrophobic surfaces by creating artificial roughness via microstructuring. Micron scale patterns consisting of nanocrystalline ZnO seed particles were applied to glass substrates with a modified ink-jet printer. Microrods were then grown on the patterns by a hydrothermal process without any further chemical modification. Water contact angle (WCA)(1) up to 153° was achieved. Different micro array patterned surfaces with varying response of static contact angle or sessile droplet analysis are reported.

  15. Oral Pyogenic Granuloma Associated With a Dental Implant Treated With an Er:YAG Laser: A Case Report.

    Science.gov (United States)

    Kaya, Alper; Ugurlu, Faysal; Basel, Bilal; Sener, Cem B

    2015-12-01

    A pyogenic granuloma is a tumorlike proliferation that occurs slightly more often in females, frequently involving the gingiva in the maxillary region. Clinically, it presents as a sessile or pedunculated exophytic mass with a smooth or lobulated surface, which tends to bleed easily. Its color can range from pink to dark red. The most common treatment is surgical excision. This case report presents a pyogenic granuloma that formed around an implant 7 years after its insertion. Pyogenic granulomas associated with dental implants are extremely rare; this is the fourth reported case and the first case of pyogenic granuloma to be treated with an Er:YAG laser.

  16. Adenomatoid hyperplasia of lower lip.

    Science.gov (United States)

    Sharma, Gaganjot Kaur; Sharma, Manish; Vanaki, Srinivas S

    2011-10-01

    Adenomatoid hyperplasia (AH) is an uncommon, non-neoplastic swelling on the palate caused due to hyperplasia of the mucinous acini. The lesion clinically presents as a sessile tumor-like nodule resembling pleomorphic adenoma. Histopathologic findings include lobules of enlarged mucinous acini which are filled with secretory granules. The nuclei are squeezed to the basal portions, associated with focal inflammation and ductal dilatation, and a history of trauma is often elicited. Here, we report a rare case of AH of the lower lip in a 20-year-old male patient, which mimics a mucous retention cyst or mucocele. PMID:22135695

  17. Adenomatoid hyperplasia of lower lip

    Directory of Open Access Journals (Sweden)

    Gaganjot Kaur Sharma

    2011-01-01

    Full Text Available Adenomatoid hyperplasia (AH is an uncommon, non-neoplastic swelling on the palate caused due to hyperplasia of the mucinous acini. The lesion clinically presents as a sessile tumor-like nodule resembling pleomorphic adenoma. Histopathologic findings include lobules of enlarged mucinous acini which are filled with secretory granules. The nuclei are squeezed to the basal portions, associated with focal inflammation and ductal dilatation, and a history of trauma is often elicited. Here, we report a rare case of AH of the lower lip in a 20-year-old male patient, which mimics a mucous retention cyst or mucocele.

  18. Granularcelletumor i colon--Abrikossoffs tumor

    DEFF Research Database (Denmark)

    Eriksen, Jens Ravn; Ibsen, Per; Gyrtrup, Hans Jørgen

    2006-01-01

    A 50-year-old woman had a right hemicoletomy due to a large sessile polyp in the ascending colon, inappropriate for polypectomy. Histopathologic examination of the specimen showed a tubulovillous adenoma with moderate dysplasia and an adjacent 1 x 1 cm submucosal tumor classified as a benign GCT...... due to the appearance in the light microscope and immunohistochemical analysis. To our knowledge, this is the first reported case of synchronic adenoma and GCT in the colon. To date there is no evidence of any association or disposing factors between GCT in the colon and colonic adenomas or malignancy....

  19. Photoperiodic growth control in perennial trees.

    Science.gov (United States)

    Azeez, Abdul; Sane, Aniruddha P

    2015-01-01

    Plants have to cope with changing seasons and adverse environmental conditions. Being sessile, plants have developed elaborate mechanisms for their survival that allow them to sense and adapt to the environment and reproduce successfully. A major adaptive trait for the survival of trees of temperate and boreal forests is the induction of growth cessation in anticipation of winters. In the last few years enormous progress has been made to elucidate the molecular mechanisms underlying SDs induced growth cessation in model perennial tree hybrid aspen (Populus tremula × P. tremuloides). In this review we discuss the molecular mechanism underlying photoperiodic control of growth cessation and adaptive responses.

  20. Drop Size Dependence of the Contact Angle of Nanodroplets

    Institute of Scientific and Technical Information of China (English)

    GUO Hong-Kai; FANG Hai-Ping

    2005-01-01

    @@ The contact angle of nanosized non-polarized argon sessile droplets on a solid substrate is studied by using molecular dynamics simulations.It is found that the drop size dependence of the contact angle is sensitive to the interaction between the liquid molecules and solid molecules.The contact angle decreases with the decreasing drop size for larger interaction between the liquid molecules and the solid substrate, and vice versa.This observation is consistent with most of the previous theoretical and experimental results.

  1. Granular Cell Schwannoma

    Directory of Open Access Journals (Sweden)

    Dheepa R

    2004-01-01

    Full Text Available An 11 year old female child had a small painful spot over the scalp of 4 months duration. Earlier, she had undergone a local excision for a similar problem, but it had recurred at the same site after a few months. Examination revealed a skin colored sessile tender firm papule of 3 mm size on the right parietal region. Excision biopsy showed broad fascicles of tumor cells with eosinopilic cytoplasmic granules infiltrating the dermis amongst the collagen bundles, which was consistent with granular cell schwannoma.

  2. Atomistic study of multimechanism diffusion by self-interstitial defects in -Fe.

    Energy Technology Data Exchange (ETDEWEB)

    Anento, Napoleon [Universitat Politechnica de Catalunia; Serra, Anna [Universitat Politecnica de Catalunya; Osetskiy, Yury N [ORNL

    2010-01-01

    We present the results of an extensive molecular dynamics study of self-interstitial atom (SIA) clusters containing up to 37 defects over a wide range of temperatures in iron. A long simulation time and high statistics of defect jumps allowed a detailed treatment of the data to be performed. Diffusion exhibits a change in mechanism from three-dimensional to one-dimensional for clusters of 4-7 SIAs. Stable sessile configurations present in the diffusion process are described and their influence on the diffusion parameters is discussed. Diffusion coefficients, correlation factors estimated, and mechanisms observed, are compared with previously published results, and the influence of the interatomic potential is considered.

  3. A study of important entomofauna in oak forests of Slovenia

    OpenAIRE

    Obu, Jaroš; Podobnikar, Tomaž; Harapin, Miroslav; Jurc, Maja

    2015-01-01

    Insects in 9 research areas in pedunculate oak and sessile oak forests in Slovenia have been studied. We identified 35 insect species as well as two genera from 13 families. The defoliation of oak leaves in studied forests was between 10 and 90 %. More than 80 % of the defoliation was caused by mottled umber and winter moth (Erannis defoliaria Cl., Operophthera brumata L.). Leaf-roll moths are an important group of pests of oak leaves and acorns. The most numerous is the green leaf-roll moth,...

  4. Raziskava pomembne entomofavne hrastovih gozdov Slovenije

    OpenAIRE

    Harapin, Miroslav; Jurc, Maja

    2000-01-01

    Insects in 9 research areas in pedunculate oak and sessile oak forests in Slovenia have been studied. We identified 35 insect species as well as two genera from 13 families. The defoliation of oak leaves in studied forests was between 10 and 90 %. More than 80 % of the defoliation was caused by mottled umber and winter moth (Erannis defoliaria Cl., Operophthera brumata L.). Leaf-roll moths are an important group of pests of oak leaves and acorns. The most numerous is the green leaf-roll moth,...

  5. A study of important entomofauna in oak forests of Slovenia: Raziskava pomembne entomofavne hrastovih gozdov Slovenije:

    OpenAIRE

    Harapin, Miroslav; Jurc, Maja

    2000-01-01

    Insects in 9 research areas in pedunculate oak and sessile oak forests in Slovenia have been studied. We identified 35 insect species as well as two genera from 13 families. The defoliation of oak leaves in studied forests was between 10 and 90 %. More than 80 % of the defoliation was caused by mottled umber and winter moth (Erannis defoliaria Cl., Operophthera brumata L.). Leaf-roll moths are an important group of pests of oak leaves and acorns. The most numerous is the green leaf-roll moth,...

  6. Root vitality of Fagus sylvatica L., Quercus petraea Liebl. and Acer pseudoplatanus L. in mature mixed forest stand

    OpenAIRE

    Grygoruk, Dorota

    2016-01-01

    The main task of the present study was to investigate the root vitality of common beech Fagus sylvatica L., sessile oak Quercus petraea Liebl. and sycamore maple Acer pseudoplatanus L. in the optimal growth conditions in south-western Poland. The study was carried out in 130-year-old mixed stand located within natural range of studied tree species. The density of roots (g/100 cm3 of soil) and biomass of fine roots (g/m2) in topsoil layers (0–5 cm, 5–15 cm) were determined in the tree biogroup...

  7. Vliv podílu listnáčů ve SM monokulturách na diverzitu a druhové složení bylinného patra

    OpenAIRE

    Svobodová, Pavla

    2014-01-01

    This diploma thesis deals with the influence of hardwood species (particularly sessile oak -- Quercus petraea) in spruce monocultures on diversity and herb layer species composition. The aim of the thesis is create 40 phytosociological relevés with different percentage representation of aok in spruce monocultures. Particularly 10 relevés for 4 spruce monocultures variants was described: 10 relevés of 100 % spruce monocultures, 10 relevés of 90 % spruce monocultures with 10 % oak, 10 relevés o...

  8. Activity of glycopeptides in combination with amikacin or rifampin against Staphylococcus epidermidis biofilms on plastic catheters.

    Science.gov (United States)

    Pascual, A; Ramirez de Arellano, E; Perea, E J

    1994-06-01

    The in vitro activity of vancomycin and teicoplanin (fourfold the MBC), alone and in combination with amikacin (16 mg/l) or rifampin (1 mg/l), against Staphylococcus epidermidis (slime-producing and non slime-producing strains) biofilms on different plastic catheters was evaluated. The addition of amikacin or rifampin significantly increased the activity of glycopeptides against sessile bacteria. With the slime-producing strain, these combinations were able to sterilize the surface of Vialon and polyvinylchloride catheters. It is concluded that the in vitro activity of glycopeptides against Staphylococcus epidermidis biofilms on plastic catheters can be increased by the addition of amikacin or rifampin. PMID:7957277

  9. Adsorption of natural surfactants present in sea waters at surfaces of minerals: contact angle measurements

    OpenAIRE

    Katarzyna Boniewicz-Szmyt; Pogorzelski, Stanisław J.; Adriana Mazurek

    2009-01-01

    The wetting properties of solid mineral samples (by contact angles) in original surfactant-containing sea water (Gulf of Gdańsk, Baltic) were characterised under laboratory conditions on a large set (31 samples) of well-classified stones of diverse hydrophobicity using the sessile drop (ADSA-P approach), captive bubble and inclined plate methods. An experimental relation between the static contact angle θeq and stone density ρ was obtained in the form θeq = Bρ + C, where B = 12.23 ± 0.92, C =...

  10. Heterotopic Pancreas in the Stomach: A Case Report and a Brief Review of the Literature

    Directory of Open Access Journals (Sweden)

    Uday A Gokhale

    2010-05-01

    Full Text Available Context Heterotopic pancreas is the presence of pancreatic tissue found outside the usual anatomical location of the pancreas. It is a rare condition and can occur anywhere in the gastrointestinal tract with the stomach and the small bowel being the most common sites. It is usually asymptomatic and often discovered incidentally. Case report We report the case of a 48-year-old Omani female who presented with recurrent epigastric pain. Endoscopy revealed a sessile mass in the antrum which was snared and showed heterotopic pancreatic tissue in the submucosa on histopathology. Conclusion Heterotopic pancreas should be considered in the differential diagnosis of gastric mass lesions.

  11. Effects of 1997-1998 ENSO on coral reef communities in the Gulf of California, Mexico

    OpenAIRE

    Roberto Iglesias Prieto; Héctor Reyes Bonilla; Rafael Riosmena Rodríguez

    2003-01-01

    Sea surface temperatures in the eastern tropical Pacific increase dramatically during El Niño Southern Oscillation (ENSO) events. This increase in sea temperature negatively affects two important coralline communities in the southern Gulf of California. During the 1997-1998 ENSO event, benthic sessile communities were exposed to a thermal anomaly of up to 3 °C during the summer. About 30% of live corals in six important communities in the region during 1996 (pre-ENSO conditions), 1997, 1998 a...

  12. Density of Na2O-Li2O-SiO2-B2O3 Molten Slag at 1 803-1 873 K

    Institute of Scientific and Technical Information of China (English)

    XIAO Feng; FANG Liang

    2004-01-01

    The density of three kinds of molten slags was measured by modified sessile drop method at 1 803-1 873 K. The density of molten slag is found to decrease with increasing temperature. The temperature coefficients of Na2O-Li2O-SiO2 and Li2O-SiO2-B2O3 slag are smaller than that of Na2O-B2O3 slag. The molar volume of slags increases with increasing temperature.

  13. Heavy metals effect on the E. coli biofilms isolated from the polluted waters of Arieş river (Romania

    Directory of Open Access Journals (Sweden)

    Andreea Bodoczi-Florea

    2012-12-01

    Full Text Available Objective: Biofilms are surface-attached microbial communities consisted by multiple layers ofcells embedded in a hydrated matrix. Biofilms are dynamic microbial communities in which transitionsbetween planktonic and sessile modes of growth occur interchangeably in response to differentenvironmental cues. The effects of three trace metals (copper, manganese and zinc at differentconcentrations on Escherichia coli strains isolated from the water of Arieş river (Romania werecompared using epifluorescence microscopy. Data showed that the heavy metals affected not only thecells viability but also the biofilm formation according to the growing concentration of the metals in themedia.

  14. A mountain among molehills: removing an impinging large femoral neck osteochondroma in a man with hereditary multiple exostoses.

    LENUS (Irish Health Repository)

    Fitzgerald, Conall W R

    2014-01-01

    A 31-year-old man with a history of hereditary multiple exostoses (HME) presented with persistent right groin pain and reduced hip range of movement. Examination demonstrated a positive FADIR (flexion, adduction and internal rotation) test suggesting femoroacetabular impingement (FAI). Investigations showed multiple sessile osteochondromata of the right femur with a dominant anterolateral femoral neck osteochondroma causing flexion block. The patient underwent an uncomplicated proximal femoral exostectomy. Six-week postoperative pain, range of movement and daily activity had greatly improved. This case highlights that even in the setting of multiple osteochondromata, excellent impingement relief can be achieved following selective proximal femoral exostectomy.

  15. Palisaded encapsulated neuroma: an uncommon tumour at uncommon location

    Directory of Open Access Journals (Sweden)

    Anup Kumar Tiwary

    2016-10-01

    Full Text Available Palisaded encapsulated neuroma (PEN is an uncommon, sporadic, benign, intraneural tumour presenting as an asymptomatic, solitary, sessile, immobile, skin-coloured papule or nodule, commonly affecting the “butterfly area” of face in middle-aged person. Other less commonly involved sites are trunk, shoulder and distal part of extremities. We herein report a 45 years old male presenting with a painless, firm, nodular growth over the posteromedial aspect of right knee which was further confirmed to be the case of PEN on histopathological examination.

  16. Complex regulatory network encompassing the Csr, c-di-GMP and motility systems of Salmonella Typhimurium

    OpenAIRE

    Jonas, Kristina; Edwards, Adrianne N.; Ahmad, Irfan; Romeo, Tony; Römling, Ute; Melefors, Öjar

    2009-01-01

    Bacterial survival depends on the ability to switch between sessile and motile life styles in response to changing environmental conditions. In many species, this switch is governed by (3′-5′)-cyclic-diguanosine monophosphate (c-di-GMP) a signalling molecule, which is metabolized by proteins containing GGDEF and/or EAL domains. Salmonella Typhimurium contains 20 such proteins. Here, we show that the RNA-binding protein CsrA regulates the expression of eight genes encoding GGDEF, GGDEF-EAL and...

  17. Modelling the motion of particles around choanoflagellates

    Science.gov (United States)

    Orme, B. A. A.; Blake, J. R.; Otto, S. R.

    2003-01-01

    The three-dimensional particle paths due to a helical beat pattern of the flagellum of a sessile choanoflagellate, Salpingoeca Amphoridium (SA), are modelled and compared to the experimental observations of Pettitt (2001). The organism’s main components are a flagellum and a cell body which are situated above a substrate such that the interaction between these entities is crucial in determining the fluid flow around the choanoflagellate. This flow of fluid can be characterized as Stokes flow and a flow field analogous to one created by the flagellum is generated by a distribution of stokeslets and dipoles along a helical curve.

  18. [The mastoid osteoma, an incidental feature?].

    Science.gov (United States)

    Domínguez Pérez, Angel Daniel; Rodríguez Romero, Rafael; Domínguez Durán, Emilio; Riquelme Montaño, Pedro; Alcántara Bernal, Ricardo; Monreal Rodríguez, Carlos

    2011-01-01

    Osteoma in the mastoid is a rare benign osteogenic tumour that has been described in literature in only 137 cases. It usually appears in asymptomatic patients, although a few cases are described associated with clinical manifestations. We report three cases of mastoid osteoma: a pedunculated osteoma in the aditus ad antrum (associated with a cholesteatoma), a superficial osteoma of the mastoid surface and a sessile osteoma that progressed to the temporal lobe (associated with vertigo). A brief review of this rare entity is presented and a possible association between mastoid osteoma, cholesteatoma otitis and vertigo is posed.

  19. Wettability in the liquid Cu-Ag alloy – fireproof material – gas phase system

    Directory of Open Access Journals (Sweden)

    G. Siwiec

    2013-07-01

    Full Text Available In the present paper, results of wettability studies on the liquid metal – fireproof material – gas phase system using copper and Cu-Ag alloys as well as typical fireproof materials, i.e. aluminium oxide, magnesium oxide and graphite, are presented. Contact angle measurements were conducted at 1 373–1 573 K by means of a high-temperature microscope coupled with a camera and a computer equipped with a program for recording and analysing images. For the measurements, the sessile drop method was used.

  20. Biossurfactantes: propriedades anticorrosivas, antibiofilmes e antimicrobianas

    Directory of Open Access Journals (Sweden)

    Lívia Vieira de Araujo

    2013-01-01

    Full Text Available Due to the importance of biofilms in the food industry, new products are being developed to enhance the efficiency of cleaning food-contact surfaces. Biosurfactants could be an alternative to synthetic products. The major advantages of biosurfactants over synthetic detergents are their low toxicity and highly biodegradable nature. Biosurfactants may also exhibit antimicrobial, anti-adhesive and anticorrosive activity concomitantly. In this review, we emphasize the potential application of biosurfactants as surface coating agents to prevent corrosion and decrease planktonic and sessile microbial growth.

  1. Common duckweed (Lemna minor is a versatile high-throughput infection model for the Burkholderia cepacia complex and other pathogenic bacteria.

    Directory of Open Access Journals (Sweden)

    Euan L S Thomson

    Full Text Available Members of the Burkholderia cepacia complex (Bcc have emerged in recent decades as problematic pulmonary pathogens of cystic fibrosis (CF patients, with severe infections progressing to acute necrotizing pneumonia and sepsis. This study presents evidence that Lemna minor (Common duckweed is useful as a plant model for the Bcc infectious process, and has potential as a model system for bacterial pathogenesis in general. To investigate the relationship between Bcc virulence in duckweed and Galleria mellonella (Greater wax moth larvae, a previously established Bcc infection model, a duckweed survival assay was developed and used to determine LD50 values. A strong correlation (R(2 = 0.81 was found between the strains' virulence ranks in the two infection models, suggesting conserved pathways in these vastly different hosts. To broaden the application of the duckweed model, enteropathogenic Escherichia coli (EPEC and five isogenic mutants with previously established LD50 values in the larval model were tested against duckweed, and a strong correlation (R(2 = 0.93 was found between their raw LD50 values. Potential virulence factors in B. cenocepacia K56-2 were identified using a high-throughput screen against single duckweed plants. In addition to the previously characterized antifungal compound (AFC cluster genes, several uncharacterized genes were discovered including a novel lysR regulator, a histidine biosynthesis gene hisG, and a gene located near the gene encoding the recently characterized virulence factor SuhB(Bc. Finally, to demonstrate the utility of this model in therapeutic applications, duckweed was rescued from Bcc infection by treating with bacteriophage at 6-h intervals. It was observed that phage application became ineffective at a timepoint that coincided with a sharp increase in bacterial invasion of plant tissue. These results indicate that common duckweed can serve as an effective infection model for the investigation of bacterial

  2. Metabolic pathways of Pseudomonas aeruginosa involved in competition with respiratory bacterial pathogens

    Directory of Open Access Journals (Sweden)

    Marie eBeaume

    2015-04-01

    Full Text Available Background: Chronic airway infection by Pseudomonas aeruginosa considerably contributes to lung tissue destruction and impairment of pulmonary function in cystic-fibrosis (CF patients. Complex interplays between P. aeruginosa and other co-colonizing pathogens including Staphylococcus aureus, Burkholderia spp and Klebsiella pneumoniae may be crucial for pathogenesis and disease progression.Methods: We generated a library of PA14 transposon insertion mutants to identify P. aeruginosa genes required for exploitative and direct competitions with S. aureus, B. cenocepacia, and K. pneumoniae. Results: Whereas wild type PA14 inhibited S. aureus growth, two transposon insertions located in pqsC and carB, resulted in reduced growth inhibition. PqsC is involved in the synthesis of 4-hydroxy-2-alkylquinolines (HAQs, a family of molecules having antibacterial properties, while carB is a key gene in pyrimidine biosynthesis. The carB mutant was also unable to grow in the presence of B. cepacia and K. pneumoniae but not E. coli and S. epidermidis. We further identified a transposon insertion in purF, encoding a key enzyme of purine metabolism. This mutant displayed a severe growth deficiency in the presence of Gram-negative but not of Gram-positive bacteria. We identified a beneficial interaction in a bioA transposon mutant, unable to grow on rich medium. This growth defect could be restored either by addition of biotin or by co-culturing the mutant in the presence of K. pneumoniae or E. coli.Conclusions: Complex interactions take place between the various bacterial species colonizing CF-lungs. This work identified both detrimental and beneficial interactions occurring between P. aeruginosa and three other respiratory pathogens involving several major metabolic pathways. Manipulating these pathways could be used to interfere with bacterial interactions and influence the colonization by respiratory pathogens.

  3. Specific Resistance to Pseudomonas aeruginosa Infection in Zebrafish Is Mediated by the Cystic Fibrosis Transmembrane Conductance Regulator ▿ †

    Science.gov (United States)

    Phennicie, Ryan T.; Sullivan, Matthew J.; Singer, John T.; Yoder, Jeffrey A.; Kim, Carol H.

    2010-01-01

    Cystic fibrosis (CF) is a genetic disease caused by recessive mutations in the cystic fibrosis transmembrane conductance regulator (CFTR) gene and is associated with prevalent and chronic Pseudomonas aeruginosa lung infections. Despite numerous studies that have sought to elucidate the role of CFTR in the innate immune response, the links between CFTR, innate immunity, and P. aeruginosa infection remain unclear. The present work highlights the zebrafish as a powerful model organism for human infectious disease, particularly infection by P. aeruginosa. Zebrafish embryos with reduced expression of the cftr gene (Cftr morphants) exhibited reduced respiratory burst response and directed neutrophil migration, supporting a connection between cftr and the innate immune response. Cftr morphants were infected with P. aeruginosa or other bacterial species that are commonly associated with infections in CF patients, including Burkholderia cenocepacia, Haemophilus influenzae, and Staphylococcus aureus. Intriguingly, the bacterial burden of P. aeruginosa was found to be significantly higher in zebrafish Cftr morphants than in controls, but this phenomenon was not observed with the other bacterial species. Bacterial burden in Cftr morphants infected with a P. aeruginosa ΔLasR mutant, a quorum sensing-deficient strain, was comparable to that in control fish, indicating that the regulation of virulence factors through LasR is required for enhancement of infection in the absence of Cftr. The zebrafish system provides a multitude of advantages for studying the pathogenesis of P. aeruginosa and for understanding the role that innate immune cells, such as neutrophils, play in the host response to acute bacterial infections commonly associated with cystic fibrosis. PMID:20732993

  4. A comparison of alternative 60-mer probe designs in an in-situ synthesized oligonucleotide microarray

    Directory of Open Access Journals (Sweden)

    Fairbanks Benjamin D

    2006-04-01

    Full Text Available Abstract Background DNA microarrays have proven powerful for functional genomics studies. Several technologies exist for the generation of whole-genome arrays. It is well documented that 25mer probes directed against different regions of the same gene produce variable signal intensity values. However, the extent to which this is true for probes of greater length (60mers is not well characterized. Moreover, this information has not previously been reported for whole-genome arrays designed against bacteria, whose genomes may differ substantially in characteristics directly affecting microarray performance. Results We report here an analysis of alternative 60mer probe designs for an in-situ synthesized oligonucleotide array for the GC rich, β-proteobacterium Burkholderia cenocepacia. Probes were designed using the ArrayOligoSel3.5 software package and whole-genome microarrays synthesized by Agilent, Inc. using their in-situ, ink-jet technology platform. We first validated the quality of the microarrays as demonstrated by an average signal to noise ratio of >1000. Next, we determined that the variance of replicate probes (1178 total probes examined of identical sequence was 3.8% whereas the variance of alternative probes (558 total alternative probes examined designs was 9.5%. We determined that depending upon the definition, about 2.4% of replicate and 7.8% of alternative probes produced outlier conclusions. Finally, we determined none of the probe design subscores (GC content, internal repeat, binding energy and self annealment produced by ArrayOligoSel3.5 were predictive or probes that produced outlier signals. Conclusion Our analysis demonstrated that the use of multiple probes per target sequence is not essential for in-situ synthesized 60mer oligonucleotide arrays designed against bacteria. Although probes producing outlier signals were identified, the use of ratios results in less than 10% of such outlier conclusions. We also determined that

  5. Screening and fermentation conditions of lipase-producing strain NJY-I-7%脂肪酶产生菌NJY-1-7的选育及发酵条件的研究

    Institute of Scientific and Technical Information of China (English)

    贺胜英; 陈爱军; 杜华明; 黄遵锡

    2011-01-01

    从云南省福贡县的玉米地土壤样品中筛选到一株耐高温产碱性脂肪酶的菌株NJY-1-7,通过16SrDNA鉴定该菌株为伯克氏菌(Burkholderia cenocepacia).对其发酵条件进行研究结果表明:该菌株产酶的最适培养时间为48h,酶促反应的最适作用pH值为9.0,最适作用温度为50℃,摇瓶发酵最适产酶条件为橄榄油1%,MgSO4·7H20.05%,可溶性淀粉03%,酵母膏0.5%,单蒸水70mL.在此条件下发酵脂肪酶酶活力为42.00U/mL.%A thermostable alkaline lipase-producing strain NJY-1-7 was isolated from soil of corn field in Fugong county of Yunnan. The strain was identified as Burkholderia pseudomallei the methods of 16S rDNA. The optimum pH value and temperature for lipase activity was 9.0 and 50℃ respectively. The optimum conditions for enzyme production were as follows: cultivation with shaking flask for 48h with the medium composed of olive oil 1%, MgSO4·7H2O 0.05%, soluble starch 0.3%, yeast extract 0.5%, distilled H2O 70ml. Under the optimum conditions, lipase activity could reach 42.00U/ml.

  6. In vitro volatile organic compound profiling using GC×GC-TOFMS to differentiate bacteria associated with lung infections: a proof-of-concept study.

    Science.gov (United States)

    Nizio, K D; Perrault, K A; Troobnikoff, A N; Ueland, M; Shoma, S; Iredell, J R; Middleton, P G; Forbes, S L

    2016-01-01

    Chronic pulmonary infections are the principal cause of morbidity and mortality in individuals with cystic fibrosis (CF). Due to the polymicrobial nature of these infections, the identification of the particular bacterial species responsible is an essential step in diagnosis and treatment. Current diagnostic procedures are time-consuming, and can also be expensive, invasive and unpleasant in the absence of spontaneously expectorated sputum. The development of a rapid, non-invasive methodology capable of diagnosing and monitoring early bacterial infection is desired. Future visions of real-time, in situ diagnosis via exhaled breath testing rely on the differentiation of bacteria based on their volatile metabolites. The objective of this proof-of-concept study was to investigate whether a range of CF-associated bacterial species (i.e. Pseudomonas aeruginosa, Burkholderia cenocepacia, Haemophilus influenzae, Stenotrophomonas maltophilia, Streptococcus pneumoniae and Streptococcus milleri) could be differentiated based on their in vitro volatile metabolomic profiles. Headspace samples were collected using solid phase microextraction (SPME), analyzed using comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry (GC×GC-TOFMS) and evaluated using principal component analysis (PCA) in order to assess the multivariate structure of the data. Although it was not possible to effectively differentiate all six bacteria using this method, the results revealed that the presence of a particular pattern of VOCs (rather than a single VOC biomarker) is necessary for bacterial species identification. The particular pattern of VOCs was found to be dependent upon the bacterial growth phase (e.g. logarithmic versus stationary) and sample storage conditions (e.g. short-term versus long-term storage at  -18 °C). Future studies of CF-associated bacteria and exhaled breath condensate will benefit from the approaches presented in this study and further

  7. Plant host and sugar alcohol induced exopolysaccharide biosynthesis in the Burkholderia cepacia complex.

    Science.gov (United States)

    Bartholdson, S Josefin; Brown, Alan R; Mewburn, Ben R; Clarke, David J; Fry, Stephen C; Campopiano, Dominic J; Govan, John R W

    2008-08-01

    The species that presently constitute the Burkholderia cepacia complex (Bcc) have multiple roles; they include soil and water saprophytes, bioremediators, and plant, animal and human pathogens. Since the first description of pathogenicity in the Bcc was based on sour skin rot of onion bulbs, this study returned to this plant host to investigate the onion-associated phenotype of the Bcc. Many Bcc isolates, which were previously considered to be non-mucoid, produced copious amounts of exopolysaccharide (EPS) when onion tissue was provided as the sole nutrient. EPS production was not species-specific, was observed in isolates from both clinical and environmental sources, and did not correlate with the ability to cause maceration of onion tissue. Chemical analysis suggested that the onion components responsible for EPS induction were primarily the carbohydrates sucrose, fructose and fructans. Additional sugars were investigated, and all alcohol sugars tested were able to induce EPS production, in particular mannitol and glucitol. To investigate the molecular basis for EPS biosynthesis, we focused on the highly conserved bce gene cluster thought to be involved in cepacian biosynthesis. We demonstrated induction of the bce gene cluster by mannitol, and found a clear correlation between the inability of representatives of the Burkholderia cenocepacia ET12 lineage to produce EPS and the presence of an 11 bp deletion within the bceB gene, which encodes a glycosyltransferase. Insertional inactivation of bceB in Burkholderia ambifaria AMMD results in loss of EPS production on sugar alcohol media. These novel and surprising insights into EPS biosynthesis highlight the metabolic potential of the Bcc and show that a potential virulence factor may not be detected by routine laboratory culture. Our results also highlight a potential hazard in the use of inhaled mannitol as an osmolyte to improve mucociliary clearance in individuals with cystic fibrosis. PMID:18667584

  8. MstX and a putative potassium channel facilitate biofilm formation in Bacillus subtilis.

    Directory of Open Access Journals (Sweden)

    Matthew E Lundberg

    Full Text Available Biofilms constitute the predominant form of microbial life and a potent reservoir for innate antibiotic resistance in systemic infections. In the spore-forming bacterium Bacillus subtilis, the transition from a planktonic to sessile state is mediated by mutually exclusive regulatory pathways controlling the expression of genes required for flagellum or biofilm formation. Here, we identify mstX and yugO as novel regulators of biofilm formation in B. subtilis. We show that expression of mstX and the downstream putative K+ efflux channel, yugO, is necessary for biofilm development in B. subtilis, and that overexpression of mstX induces biofilm assembly. Transcription of the mstX-yugO operon is under the negative regulation of SinR, a transcription factor that governs the switch between planktonic and sessile states. Furthermore, mstX regulates the activity of Spo0A through a positive autoregulatory loop involving KinC, a histidine kinase that is activated by potassium leakage. The addition of potassium abrogated mstX-mediated biofilm formation. Our findings expand the role of Spo0A and potassium homeostasis in the regulation of bacterial development.

  9. Recent Trends of Tree Growth in Relation to Climate Change in Hungary

    Directory of Open Access Journals (Sweden)

    SOMOGYI, Zoltán

    2008-01-01

    Full Text Available The paper addresses two related issues. One is whether, and how, growth patterns of standmean height have changed in Hungary in the last few decades, and the other is whether recentlyobserved increases in mean annual temperature might have caused changes in growth trends. Changesin tree growth were investigated for beech (Fagus sylvatica, sessile oak (Quercus petraea andTurkey oak (Quercus cerris by comparing stand mean heights over age using data from the forestinventories of 1981 and 2001, and for sessile oak using stand mean height data from permanentsample plots since 1961. Tree growth was found to have accelerated for each species mentioned, withTurkey oak showing the largest acceleration. To study the second issue, stand mean height was relatedto elevation, wich in turn was related to mean annual temperature and precipitation. For theseanalyses, too, data of many thousands of stands in the forest inventory was used. Stand mean heightwas found to increase with decreasing elevation, i.e. with increasing mean annual temperature, foreach of the three species. As the annual precipitation and air humidity decreases with decreasingelevation, it was concluded that increases of mean annual temperature could positively have affectedtree growth in the last few decades. However, this effect is expected to be soon limited by wateravailability.

  10. Global regulation of gene expression and cell differentiation in Caulobacter crescentus in response to nutrient availability.

    Science.gov (United States)

    England, Jennifer C; Perchuk, Barrett S; Laub, Michael T; Gober, James W

    2010-02-01

    In a developmental strategy designed to efficiently exploit and colonize sparse oligotrophic environments, Caulobacter crescentus cells divide asymmetrically, yielding a motile swarmer cell and a sessile stalked cell. After a relatively fixed time period under typical culture conditions, the swarmer cell differentiates into a replicative stalked cell. Since differentiation into the stalked cell type is irreversible, it is likely that environmental factors such as the availability of essential nutrients would influence the timing of the decision to abandon motility and adopt a sessile lifestyle. We measured two different parameters in nutrient-limited chemostat cultures, biomass concentration and the ratio of nonstalked to stalked cells, over a range of flow rates and found that nitrogen limitation significantly extended the swarmer cell life span. The transcriptional profiling experiments described here generate the first comprehensive picture of the global regulatory strategies used by an oligotroph when confronted with an environment where key macronutrients are sparse. The pattern of regulated gene expression in nitrogen- and carbon-limited cells shares some features in common with most copiotrophic organisms, but critical differences suggest that Caulobacter, and perhaps other oligotrophs, have evolved regulatory strategies to deal distinctly with their natural environments. We hypothesize that nitrogen limitation extends the swarmer cell lifetime by delaying the onset of a sequence of differentiation events, which when initiated by the correct combination of external environmental cues, sets the swarmer cell on a path to differentiate into a stalked cell within a fixed time period.

  11. Microfaunal indicators, Ciliophora phylogeny and protozoan population shifts in an intermittently aerated and fed bioreactor

    Energy Technology Data Exchange (ETDEWEB)

    Ntougias, Spyridon, E-mail: sntougia@env.duth.gr [Democritus University of Thrace, Department of Environmental Engineering, Laboratory of Wastewater Management and Treatment Technologies, Vas. Sofias 12, 67100 Xanthi (Greece); Tanasidis, Spartakos; Melidis, Paraschos [Democritus University of Thrace, Department of Environmental Engineering, Laboratory of Wastewater Management and Treatment Technologies, Vas. Sofias 12, 67100 Xanthi (Greece)

    2011-02-28

    Microfauna community structure was examined in the mixed liquor of a bench-scale bioreactor equipped with an intermittent aeration and feeding system. The reactor was operated under an intermittent aeration of 25 min in every 1 h and varying feeding conditions (0.264, 0.403 and 0.773 kg BOD{sub 5}/m{sup 3} d). A total of 14 protozoan and metazoan taxa were identified by microscopic examination. Sessile ciliates, followed by crawling ciliates, were the major protozoan groups under 0.403 kg BOD{sub 5}/m{sup 3} d organic loading conditions, while sessile ciliate population was remarkably increased under an organic loading of 0.773 kg BOD{sub 5}/m{sup 3} d. Principal Component Analysis and Pearson correlation coefficient tests were performed in order to reveal relationships between microfauna community and operational parameters. Ciliophora specific-18S rRNA gene clone library was constructed to identify ciliate diversity under 0.773 kg BOD{sub 5}/m{sup 3} d organic loading conditions. Ciliophora diversity consisted of members of Aspidiscidae, Epistylidae, Opisthonectidae and Vorticellidae, with the majority of the clones being associated with the species Vorticella fusca. At least one novel phylogenetic linkage among Ciliophora was identified. Comparisons made after molecular characterization and microscopic examination of Ciliophora community showed that the estimation of broad ciliate groups is useful for ecological considerations and evaluation of the operational conditions in wastewater treatment plants.

  12. Marine biofilm bacteria evade eukaryotic predation by targeted chemical defense.

    Directory of Open Access Journals (Sweden)

    Carsten Matz

    Full Text Available Many plants and animals are defended from predation or herbivory by inhibitory secondary metabolites, which in the marine environment are very common among sessile organisms. Among bacteria, where there is the greatest metabolic potential, little is known about chemical defenses against bacterivorous consumers. An emerging hypothesis is that sessile bacterial communities organized as biofilms serve as bacterial refuge from predation. By testing growth and survival of two common bacterivorous nanoflagellates, we find evidence that chemically mediated resistance against protozoan predators is common among biofilm populations in a diverse set of marine bacteria. Using bioassay-guided chemical and genetic analysis, we identified one of the most effective antiprotozoal compounds as violacein, an alkaloid that we demonstrate is produced predominately within biofilm cells. Nanomolar concentrations of violacein inhibit protozoan feeding by inducing a conserved eukaryotic cell death program. Such biofilm-specific chemical defenses could contribute to the successful persistence of biofilm bacteria in various environments and provide the ecological and evolutionary context for a number of eukaryote-targeting bacterial metabolites.

  13. Ediacaran skeletal metazoan interpreted as a lophophorate.

    Science.gov (United States)

    Zhuravlev, A Yu; Wood, R A; Penny, A M

    2015-11-01

    While many skeletal biomineralized genera are described from Ediacaran (635-541 million years ago, Ma) strata, none have been suggested to have an affinity above the Porifera-Cnidaria metazoan grade. Here, we reinterpret the widespread terminal Ediacaran (approx. 550-541 Ma) sessile goblet-shaped Namacalathus as a triploblastic eumetazoan. Namacalathus has a stalked cup with radially symmetrical cross section, multiple lateral lumens and a central opening. We show that the skeleton of Namacalathus is composed of a calcareous foliated ultrastructure displaying regular concordant columnar inflections, with a possible inner organic-rich layer. These features point to an accretionary growth style of the skeleton and an affinity with the Lophotrochozoa, more specifically within the Lophophorata (Brachiopoda and Bryozoa). Additionally, we present evidence for asexual reproduction as expressed by regular budding in a bilateral pattern. The interpretation of Namacalathus as an Ediacaran total group lophophorate is consistent with an early radiation of the Lophophorata, as known early Cambrian representatives were sessile, mostly stalked forms, and in addition, the oldest known calcareous Brachiopoda (early Cambrian Obolellida) and Bryozoa (Ordovician Stenolaemata) possessed foliated ultrastructures. PMID:26538593

  14. Ammonium and attachment of Rhodopirellula baltica.

    Science.gov (United States)

    Frank, Carsten S; Langhammer, Philipp; Fuchs, Bernhard Maximilian; Harder, Jens

    2011-05-01

    A dimorphic life cycle has been described for the planctomycete Rhodopirellula baltica SH1(T), with juvenile motile, free-swimming cells and adult sessile, attached-living cells. However, attachment as a response to environmental factors was not investigated. We studied the response of R. baltica to nitrogen limitation. In batch cultures, ammonium limitation coincided with a dominance of free-swimming cells and a low number of aggregates. Flow cytometry revealed a quantitative shift with increasing ammonium availability, from single cells towards attached cells in large aggregates. During growth of R. baltica on glucose and ammonium in chemostats, an ammonium addition caused a macroscopic change of the growth behaviour, from homogeneous growth in the liquid phase to a biofilm on the borosilicate glass wall of the chemostat vessel. Thus, an ammonium limitation-a carbon to nitrogen supply ratio of 30:1-sustained free-living growth without aggregate formation. A sudden increase in ammonium supply induced sessile growth of R. baltica. These observations reveal a response of Rhodopirellula baltica cells to ammonium: they abandon the free-swimming life, attach to particles and form biofilms. PMID:21340506

  15. Extracellular Electron Transfer Is a Bottleneck in the Microbiologically Influenced Corrosion of C1018 Carbon Steel by the Biofilm of Sulfate-Reducing Bacterium Desulfovibrio vulgaris.

    Directory of Open Access Journals (Sweden)

    Huabing Li

    Full Text Available Carbon steels are widely used in the oil and gas industry from downhole tubing to transport trunk lines. Microbes form biofilms, some of which cause the so-called microbiologically influenced corrosion (MIC of carbon steels. MIC by sulfate reducing bacteria (SRB is often a leading cause in MIC failures. Electrogenic SRB sessile cells harvest extracellular electrons from elemental iron oxidation for energy production in their metabolism. A previous study suggested that electron mediators riboflavin and flavin adenine dinucleotide (FAD both accelerated the MIC of 304 stainless steel by the Desulfovibrio vulgaris biofilm that is a corrosive SRB biofilm. Compared with stainless steels, carbon steels are usually far more prone to SRB attacks because SRB biofilms form much denser biofilms on carbon steel surfaces with a sessile cell density that is two orders of magnitude higher. In this work, C1018 carbon steel coupons were used in tests of MIC by D. vulgaris with and without an electron mediator. Experimental weight loss and pit depth data conclusively confirmed that both riboflavin and FAD were able to accelerate D. vulgaris attack against the carbon steel considerably. It has important implications in MIC failure analysis and MIC mitigation in the oil and gas industry.

  16. Contact angle and surface tension measurements of a five-ring polyphenyl ether

    Science.gov (United States)

    Jones, W. R., Jr.

    1985-01-01

    Contact angle measurements were performed for a five-ring polyphenyl ether isomeric mixture on M-50 steel in a dry nitrogen atmosphere. Two different techniques were used: (1) a tilting plate apparatus, and (2) a sessile drop apparatus. Measurements were made for the temperature range 25 to 190 C. Surface tension was measured by a differential maximum bubble pressure technique over the range 23 to 220C in room air. The critical surface energy of spreading (gamma (sub c)) was determined for the polyphenyl ether by plotting the cosine of the contact angle (theta) versus the surface tension (gamma (sub LV)). The straight line intercept at cosine theta = 1 is defined as gamma (sub c). Gamma (sub c) was found to be 30.1 dyn/cm for the tilting plate technique and 31.3 dyn/cm for the sessile drop technique. These results indicate that the polyphenyl ether is inherently autophobic (i.e., it will not spread on its own surface film until its surface tension is less than gamma (sub c). This phenomenon is discussed in light of the wettability and wear problems encountered with this fluid.

  17. Synergistic effect of fosfomycin and fluoroquinolones against Pseudomonas aeruginosa growing in a biofilm.

    Directory of Open Access Journals (Sweden)

    Mikuniya,Takeshi

    2005-10-01

    Full Text Available

    Ulifloxacin is the active form of the prodrug prulifloxacin and shows a highly potent antipseudomonal activity. In this study, we examined the combined effect of fosfomycin and ulifloxacin against Pseudomonas aeruginosa (P. aeruginosa growing in a biofilm using a modified Robbins device with artificial urine, and compared it to that of the combination of fosfomycin and ciprofloxacin or levofloxacin. An ATP bioluminescence assay was used to evaluate the antibacterial activity of the agents against sessile cells in a mature biofilm developed on a silicon disk. The total bioactivity of P. aeruginosa growing in a biofilm that had not been fully eradicated by fosfomycin or any of the fluoroquinolones alone at 10 times the MIC decreased after combination treatment with fosfomycin and fluoroquinolones. Morphological changes occurred in a time-dependent fashion; namely, swollen and/or rounding cells emerged within a couple of hours after combination treatment, marking the initial stage in the process leading to the destruction of the biofilms. We could not find any difference among the 3 fluoroquinolones with regard to their synergistic effects when administered with fosfomycin. The combination treatment of fosfomycin and fluoroquinolones with highly potent antipseudomonal activities was effective in eradicating sessile cells of P. aeruginosa in the biofilm and promises to be beneficial against biofilm-associated infectious diseases.

  18. The marine bacteria Shewanella frigidimarina NCIMB400 upregulates the type VI secretion system during early biofilm formation.

    Science.gov (United States)

    Linares, Denis; Jean, Natacha; Van Overtvelt, Perrine; Ouidir, Tassadit; Hardouin, Julie; Blache, Yves; Molmeret, Maëlle

    2016-02-01

    Shewanella sp. are facultative anaerobic Gram-negative bacteria, extensively studied for their electron transfer ability. Shewanella frigidimarina has been detected and isolated from marine environments, and in particular, from biofilms. However, its ability to adhere to surfaces and form a biofilm is poorly understood. In this study, we show that the ability to adhere and to form a biofilm of S. frigidimarina NCIMB400 is significantly higher than that of Shewanella oneidensis in our conditions. We also show that this strain forms a biofilm in artificial seawater, whereas in Luria-Bertani, this capacity is reduced. To identify proteins involved in early biofilm formation, a proteomic analysis of sessile versus planktonic membrane-enriched fractions allowed the identification of several components of the same type VI secretion system gene cluster: putative Hcp1 and ImpB proteins as well as a forkhead-associated domain-containing protein. The upregulation of Hcp1 a marker of active translocation has been confirmed using quantitative reverse transcription polymerase chain reaction. Our data demonstrated the presence of a single and complete type VI secretion system in S. frigidimarina NCIMB400 genome, upregulated in sessile compared with planktonic conditions. The fact that three proteins including the secreted protein Hcp1 have been identified may suggest that this type VI secretion system is functional. PMID:26617163

  19. Sphaerodoridae (Annelida) from Lizard Island, Great Barrier Reef, Australia, including the description of two new species and reproductive notes.

    Science.gov (United States)

    Capa, María; Rouse, Greg W

    2015-09-18

    Sphaerodorids are scarce at Lizard Island archipelago and other localities in the Great Barrier Reef, Australia. Intensive collections at a variety of habitats within the Lizard Island archipelago over the last four decades have resulted in a total of just 11 specimens. Nevertheless, they represent two new species and a new record for Lizard Island. Sphaerodoropsis aurantica n. sp. is characterised by nine longitudinal rows of sessile and spherical dorsal macrotubercles, arranged in a single transverse row per segment; parapodia with around 10 spherical papillae; and compound chaetae with thin shafts and long blades. Sphaerodoropsis plurituberculata n. sp. is characterised by more than 12 more or less clearly arranged longitudinal rows of sessile spherical dorsal tubercles (variable in size), in four transverse rows per segment; parapodia lacking papillae; and semi-compound chaetae with distally enlarged shaft and short blades. Ephesiella australiensis is reported for the first time in Lizard Island. Laboratory observations of live specimens of Sphaerodoropsis plurituberculata n. sp., revealed the use of spermatophores by males. These were found attached externally to the body surface of both sexes, indicating pseudo-copulation.

  20. Deep COI sequencing of standardized benthic samples unveils overlooked diversity of Jordanian coral reefs in the northern Red Sea.

    Science.gov (United States)

    Al-Rshaidat, Mamoon M D; Snider, Allison; Rosebraugh, Sydney; Devine, Amanda M; Devine, Thomas D; Plaisance, Laetitia; Knowlton, Nancy; Leray, Matthieu

    2016-09-01

    High-throughput sequencing (HTS) of DNA barcodes (metabarcoding), particularly when combined with standardized sampling protocols, is one of the most promising approaches for censusing overlooked cryptic invertebrate communities. We present biodiversity estimates based on sequencing of the cytochrome c oxidase subunit 1 (COI) gene for coral reefs of the Gulf of Aqaba, a semi-enclosed system in the northern Red Sea. Samples were obtained from standardized sampling devices (Autonomous Reef Monitoring Structures (ARMS)) deployed for 18 months. DNA barcoding of non-sessile specimens >2 mm revealed 83 OTUs in six phyla, of which only 25% matched a reference sequence in public databases. Metabarcoding of the 2 mm - 500 μm and sessile bulk fractions revealed 1197 OTUs in 15 animal phyla, of which only 4.9% matched reference barcodes. These results highlight the scarcity of COI data for cryptobenthic organisms of the Red Sea. Compared with data obtained using similar methods, our results suggest that Gulf of Aqaba reefs are less diverse than two Pacific coral reefs but much more diverse than an Atlantic oyster reef at a similar latitude. The standardized approaches used here show promise for establishing baseline data on biodiversity, monitoring the impacts of environmental change, and quantifying patterns of diversity at regional and global scales.

  1. Differences in Biofilm Mass, Expression of Biofilm-Associated Genes, and Resistance to Desiccation between Epidemic and Sporadic Clones of Carbapenem-Resistant Acinetobacter baumannii Sequence Type 191

    Science.gov (United States)

    Selasi, Gati Noble; Nicholas, Asiimwe; Jeon, Hyejin; Na, Seok Hyeon; Kwon, Hyo Il; Kim, Yoo Jeong; Heo, Sang Taek; Oh, Man Hwan; Lee, Je Chul

    2016-01-01

    Understanding the biology behind the epidemicity and persistence of Acinetobacter baumannii in the hospital environment is critical to control outbreaks of infection. This study investigated the contributing factors to the epidemicity of carbapenem-resistant A. baumannii (CRAB) sequence type (ST) 191 by comparing the differences in biofilm formation, expression of biofilm-associated genes, and resistance to desiccation between major epidemic (n = 16), minor epidemic (n = 12), and sporadic (n = 12) clones. Biofilm mass was significantly greater in the major epidemic than the minor epidemic and sporadic clones. Major and minor epidemic clones expressed biofilm-associated genes, abaI, bap, pgaABCD, and csuA/BABCDE, higher than the sporadic clones in sessile conditions. The csuC, csuD, and csuE genes were more highly expressed in the major epidemic than minor epidemic clones. Interestingly, minor epidemic clones expressed more biofilm-associated genes than the major epidemic clone under planktonic conditions. Major epidemic clones were more resistant to desiccation than minor epidemic and sporadic clones on day 21. In conclusion, the epidemic CRAB ST191 clones exhibit a higher capacity to form biofilms, express the biofilm-associated genes under sessile conditions, and resist desiccation than sporadic clones. These phenotypic and genotypic characteristics of CRAB ST191 may account for the epidemicity of specific CRAB ST191 clones in the hospital. PMID:27622249

  2. Carbon and nitrogen accumulation in forest floor and surface soil under different geographic origins of Maritime pine (Pinus pinaster Aiton.) plantations

    Energy Technology Data Exchange (ETDEWEB)

    Ozdemir, E.; Oral, H. V.; Akburak, S.; Makineci, E.; Yilmaz, E.

    2013-09-01

    Aim of study: To determine if plantations consisting of different geographic origins of the Maritime pine (Pinus pinaster Aiton.) could have altered C and N stocks in the forest floor and surface soils. Area of study: Forest floor and mineral soil C and N stocks were measured in four adjacent plantations of different geographic origins of Maritime pine (Gironde, Toulon, Corsica and Spain) and adjacent primary native Sessile oak (Quercus petraea L.) at Burunsuz region in Belgrad Forest where is located in the Istanbul province in the Marmara geographical region between 41° 09’-41° 12’ N latitude and 28° 54’-29° 00’ E longitude in Turkey. Material and methods: Plots were compared as common garden experiments without replications. 15 surface soil (0-10 cm) and 15 forest floor samples were taken from each Maritime pine origins and adjacent native Sessile oak forest. C and N contents were determined on LECO Truspec 2000 CN analyzer. The statistical significance of the results was evaluated by one-way Analysis of Variance (ANOVA). Research highlights: Forest floor carbon mass, nitrogen concentration and nitrogen mass of forest floor showed a significant difference among origins. Soil carbon mass and nitrogen mass did not significantly differ among investigated plots. (Author)

  3. Mitigation of microbial corrosion in Ras Budran water injection plant

    Energy Technology Data Exchange (ETDEWEB)

    Khattab, N.M. [Suez Oil Co., Cairo (Egypt)

    1995-12-01

    The Oil Company is water flooding Ras Budran field with Gulf of Suez water as a secondary means of oil recovery. Mitigation of microbial corrosion in Ras Budran water treatment plant is achieved by the continuous chlorination and weekly slugging of two types of biocides alternatively. Three years from commissioning, water quality started deteriorating at the offshore platforms in terms of high H{sub 2}S, iron contents, counts and corrosion rates. The main cause was attributed to the adhering property of sessile sulphate reducing bacteria (SRB) that could neither be controlled by corrosion inhibitor nor biocide treatment. In accordance, a cleaning and sterilization program was established for the piggable section of the sub sea injection line. This paper also presents the recent failure experienced in the remaining unpiggable section of the injection line. Diagnosis and analysis revealed that microbial corrosion was the main contributor to the failure due to the lack of pigging facility and the inability of removing the complex biofilms in which sessile bacteria grow, and rendering the applied biocides ineffective. For further confirmation intelligent pigging of the intact pipeline was run. Results showed that the line is in good condition internally with no significant corrosion.

  4. Microbial consortium influence upon steel corrosion rate, using polarisation resistance and electrochemical noise techniques

    International Nuclear Information System (INIS)

    The microbiologically influenced corrosion (MIC) is a process, which affects the oil industry, particularly the hydrocarbons extraction, transport and storage. MIC evaluation has been normally based upon microbiological tests, and just a few references mention alternating methods, such as the electrochemical techniques, which can be used as criteria for their evaluation. In this work, two different electrochemical laboratory techniques, polarisation resistance and electrochemical noise were used, in order to determine the corrosion behaviour of a microbial consortium, obtained from a gas transporting pipeline, located in the southeast of Mexico. The bacteria population growth was found to be different for sessile and plancktonic microorganisms. Moreover, long incubation times were required to reach the maximum concentration of sessile bacteria. The electrochemical techniques used in this study exhibited a similar tendency on the corrosion rate behaviour with time, and values above 0.3 mm year-1 were observed at the end of the experiments. The experiments were complemented with surface analysis. Scanning electron microscope observation of APIXL52 steel coupons, exposed to the consortium action, revealed bacteria presence, as well as a damaged steel surface. A type of localized corrosion was observed on the metal surface, and it was associated to the bacteria effect

  5. Wetting property of smooth and textured hydrophobic surfaces under condensation condition

    Institute of Scientific and Technical Information of China (English)

    HAO PengFei; LV CunJing; YAO ZhaoHui; NIU FengLei

    2014-01-01

    Static and dynamic wetting behaviors of sessile droplet on smooth,microstructured and micro/nanostructured surface under condensation condition are systematically studied.In contrast to the conventional droplet wetting on such natural materials by dropping,we demonstrate here that when dropwise condensation occurs,the sessile droplet will transit from the Cassie-Baxter wetting state to the Wenzel wetting state or partial Cassie-Baxter wetting state on the microstructured surface or the micro/nanostructured surface,which leads to a strong adhesion between the droplet and the substrate.In contrast,the apparent contact angle and the sliding angle on the smooth surface changes a little before and after the condensation because of small roughness.Theoretical analysis shows that the roughness factor controls the adhesion force of the droplet during condensation,and a theoretical model is constructed which will be helpful for us to understand the relationship between the adhesion force and the geometry of the surface.

  6. Evaluation of impacted Brazilian estuaries using the native oyster Crassostrea rhizophorae: Branchial carbonic anhydrase as a biomarker.

    Science.gov (United States)

    Azevedo-Linhares, Maristela; Freire, Carolina A

    2015-12-01

    In this study, we investigated the use of branchial carbonic anhydrase activity in a sessile filter feeding species, the oyster Crassostrea rhizophorae, as a biomarker. The oysters were collected in three human impacted Brazilian estuaries, following a crescent latitudinal gradient: in Pernambuco state (Itamaracá), in Espírito Santo state (Piraquê), and in Paraná state (Paranaguá), in August/2003 (Winter in the southern hemisphere) and February/2004 (Summer). Three sites were chosen in each estuary for oyster sampling: Reference (R), Contaminated 1 (C1, close to industrial/harbor contamination), and Contaminated 2 (C2, near to sewage discharges). Comparing to values in oysters sampled in reference sites, there was apparent inhibition in carbonic anhydrase activity (CAA) in gills of oysters from C1 of Itamaracá and from C2 of Piraquê, both cases in Summer. On the other hand, increased CAA was noted in C2 oysters of Itamaracá in winter, and of Paranaguá, in both seasons. Branchial CAA in C. rhizophorae was thus very responsive to coastal contamination. Data are consistent with its usefulness as a supporting biomarker for inexpensive and rapid analysis in the assessment of estuaries using a sessile osmoconformer species, but preferably allied to other biomarkers and with knowledge on the suite of contaminants present.

  7. Modeling of constituent redistribution and fission product migration in fast reactor U-Pu-Zr fuel

    International Nuclear Information System (INIS)

    Radial constituent redistribution in a fast reactor U-Pu-Zr fuel is an important phenomenon that occurs because the fuel alloy has thermal gradients and poly-phase fields at the typical operation temperature. In a typical temperature range (500-700degC), Zr moves from the mid-radius region to the fuel center region and the fuel surface region. Because of this phenomenon, the homogeneous fuel at beginning of life turns into locally heterogeneous fuel. Most of the thermophysical properties change locally, as does fuel performance. Fuel constituent redistribution of U-Pu-Zr is modeled by treating Pu as sessile element and therefore by assuming a pseudo-binary system. Fission product lanthanides (LA) migrate to the fuel surface. LA migration appears to be due both to direct vapor transport and diffusion through the fuel matrix. Large pores at the low Zr zone and fuel periphery may support for LA precipitates. LA diffusion through Pu also contributes to observed LA migration. Because Pu is relatively sessile, however, LA migration by diffusion through the fuel matrix is relatively small. Upon migration to the fuel surface, LA and Pu react with Fe-base alloy cladding such as HT9 and D9 whereas U and Zr do not. The LA and Pu reaction with cladding is via interdiffusion. (author)

  8. Experimental studies of contact angle hysteresis phenomena on polymer surfaces – Toward the understanding and control of wettability for different applications.

    Science.gov (United States)

    Grundke, K; Pöschel, K; Synytska, A; Frenzel, R; Drechsler, A; Nitschke, M; Cordeiro, A L; Uhlmann, P; Welzel, P B

    2015-08-01

    Contact angle hysteresis phenomena on polymer surfaces have been studied by contact angle measurements using sessile liquid droplets and captive air bubbles in conjunction with a drop shape method known as Axisymmetric Drop Shape Analysis - Profile (ADSA-P). In addition, commercially available sessile drop goniometer techniques were used. The polymer surfaces were characterized with respect to their surface structure (morphology, roughness, swelling) and surface chemistry (elemental surface composition, acid-base characteristics) by scanning electron microscopy (SEM), scanning force microscopy (SFM), ellipsometry, X-ray photoelectron spectroscopy (XPS) and streaming potential measurements. Heterogeneous polymer surfaces with controlled roughness and chemical composition were prepared by different routes using plasma etching and subsequent dip coating or grafting of polymer brushes, anodic oxidation of aluminium substrates coated with thin polymer films, deposition techniques to create regular patterned and rough fractal surfaces from core-shell particles, and block copolymers. To reveal the effects of swelling and reorientation at the solid/liquid interface contact angle hysteresis phenomena on polyimide surfaces, cellulose membranes, and thermo-responsive hydrogels have been studied. The effect of different solutes in the liquid (electrolytes, surfactants) and their impact on contact angle hysteresis were characterized for solid polymers without and with ionizable functional surface groups in aqueous electrolyte solutions of different ion concentrations and pH and for photoresist surfaces in cationic aqueous surfactant solutions. The work is an attempt toward the understanding of contact angle hysteresis phenomena on polymer surfaces aimed at the control of wettability for different applications.

  9. Marangoni or not Marangoni? Thermal Marangoni flow measurements in evaporating drops

    Science.gov (United States)

    Marin, Alvaro Gomez; Liepelt, Robert; Rossi, Massimiliano; Kaehler, Christian

    2013-11-01

    Sessile evaporating droplets fascinate for the rich and complex behavior that hides behind their apparent simplicity. Although the basic physics of the coffee-stain formation can be explained assuming thermal equilibrium (Deegan, 1997), thermal effects play an important role in the flow patterns within the droplet and in the deposits left on the substrate. Understanding such flows would give a chance to add a higher degree of control in these not-so-simple systems. For example, several studies have recently suggested that such thermal Marangoni flows can be strong enough to neutralize the coffee-stain effect. Experimental work in this sense has been scarce due to the difficulty of tracking particles at the surface of the droplet, where the flow is originated. In this study we perform fully three-dimensional and time resolved particle tracking measurements of particles suspended in sessile drops of liquids on substrates with different thermal conductivity ratios. The results are compared with some of the theoretical models and simulations available in the literature. Our final aim is to precisely quantify how important is the thermal Marangoni flow in an evaporating drop and if it can be used for practical applications.

  10. Role of biofilm in protection of the replicative form of Legionella pneumophila.

    Science.gov (United States)

    Andreozzi, Elisa; Di Cesare, Andrea; Sabatini, Luigia; Chessa, Elisa; Sisti, Davide; Rocchi, Marco; Citterio, Barbara

    2014-12-01

    The dual nature of Legionella pneumophila enables its survival in free and intracellular environments and underpins its infection and spread mechanisms. Experiments using bacterial cultures and improved RTqPCR protocols were devised to gain fresh insights into the role of biofilm in protecting the replicative form of L. pneumophila. mip gene expression was used as a marker of virulence in sessile (biofilm-bound) and planktonic (free-floating) cells of L. pneumophila serotype 1 ATCC 33152. The ratio of mip gene expression to transcriptionally active Legionella cells increased both in sessile and free-floating cells demonstrating an up-regulation of mip gene under nutrient depletion. However, a different trend was observed between the two forms, in planktonic cells the mip gene expression/transcriptionally active Legionella cells increased until the end of the experiment, while in the biofilm such increase was observed at the end of the experiment. These findings suggest a possible association between the switch to the transmissive phase of Legionella and a mip up-regulation and a role for biofilm in preserving Legionella cells in replicative form. Moreover, it has been shown that improved RTqPCR protocols are valuable tools to explore bacterial virulence. PMID:25023637

  11. Effect of Eugenol on Cell Surface Hydrophobicity, Adhesion, and Biofilm of Candida tropicalis and Candida dubliniensis Isolated from Oral Cavity of HIV-Infected Patients

    Directory of Open Access Journals (Sweden)

    Suelen Balero de Paula

    2014-01-01

    Full Text Available Most Candida spp. infections are associated with biofilm formation on host surfaces. Cells within these communities display a phenotype resistant to antimicrobials and host defenses, so biofilm-associated infections are difficult to treat, representing a source of reinfections. The present study evaluated the effect of eugenol on the adherence properties and biofilm formation capacity of Candida dubliniensis and Candida tropicalis isolated from the oral cavity of HIV-infected patients. All isolates were able to form biofilms on different substrate surfaces. Eugenol showed inhibitory activity against planktonic and sessile cells of Candida spp. No metabolic activity in biofilm was detected after 24 h of treatment. Scanning electron microscopy demonstrated that eugenol drastically reduced the number of sessile cells on denture material surfaces. Most Candida species showed hydrophobic behavior and a significant difference in cell surface hydrophobicity was observed after exposure of planktonic cells to eugenol for 1 h. Eugenol also caused a significant reduction in adhesion of most Candida spp. to HEp-2 cells and to polystyrene. These findings corroborate the effectiveness of eugenol against Candida species other than C. albicans, reinforcing its potential as an antifungal applied to limit both the growth of planktonic cells and biofilm formation on different surfaces.

  12. Extracellular matrix formation enhances the ability of Streptococcus pneumoniae to cause invasive disease.

    Directory of Open Access Journals (Sweden)

    Claudia Trappetti

    Full Text Available During infection, pneumococci exist mainly in sessile biofilms rather than in planktonic form, except during sepsis. However, relatively little is known about how biofilms contribute to pneumococcal pathogenesis. Here, we carried out a biofilm assay on opaque and transparent variants of a clinical serotype 19F strain WCH159. After 4 days incubation, scanning electron microscopy revealed that opaque biofilm bacteria produced an extracellular matrix, whereas the transparent variant did not. The opaque biofilm-derived bacteria translocated from the nasopharynx to the lungs and brain of mice, and showed 100-fold greater in vitro adherence to A549 cells than transparent bacteria. Microarray analysis of planktonic and sessile bacteria from transparent and opaque variants showed differential gene expression in two operons: the lic operon, which is involved in choline uptake, and in the two-component system, ciaRH. Mutants of these genes did not form an extracellular matrix, could not translocate from the nasopharynx to the lungs or the brain, and adhered poorly to A549 cells. We conclude that only the opaque phenotype is able to form extracellular matrix, and that the lic operon and ciaRH contribute to this process. We propose that during infection, extracellular matrix formation enhances the ability of pneumococci to cause invasive disease.

  13. Microbial consortium influence upon steel corrosion rate, using polarisation resistance and electrochemical noise techniques

    Energy Technology Data Exchange (ETDEWEB)

    Hernandez Gayosso, M.J.; Zavala Olivares, G.; Ruiz Ordaz, N.; Juarez Ramirez, C.; Garcia Esquivel, R.; Padilla Viveros, A

    2004-10-01

    The microbiologically influenced corrosion (MIC) is a process, which affects the oil industry, particularly the hydrocarbons extraction, transport and storage. MIC evaluation has been normally based upon microbiological tests, and just a few references mention alternating methods, such as the electrochemical techniques, which can be used as criteria for their evaluation. In this work, two different electrochemical laboratory techniques, polarisation resistance and electrochemical noise were used, in order to determine the corrosion behaviour of a microbial consortium, obtained from a gas transporting pipeline, located in the southeast of Mexico. The bacteria population growth was found to be different for sessile and plancktonic microorganisms. Moreover, long incubation times were required to reach the maximum concentration of sessile bacteria. The electrochemical techniques used in this study exhibited a similar tendency on the corrosion rate behaviour with time, and values above 0.3 mm year{sup -1} were observed at the end of the experiments. The experiments were complemented with surface analysis. Scanning electron microscope observation of APIXL52 steel coupons, exposed to the consortium action, revealed bacteria presence, as well as a damaged steel surface. A type of localized corrosion was observed on the metal surface, and it was associated to the bacteria effect.

  14. Variation in Nectar Volume and Sugar Concentration of Allium ursinum L. ssp. ucrainicum in Three Habitats

    Directory of Open Access Journals (Sweden)

    Ágnes Farkas

    2012-01-01

    Full Text Available Floral nectar volume and concentration of ramson (Allium ursinum L. ssp. ucrainicum were investigated in three different habitats, including two types of sessile oak-hornbeam association on brown forest soil with clay illuviation and a silver lime-flowering ash rock forest association on rendzina. Daily nectar production ranged from 0.1 to 3.8 μL per flower with sugar concentrations of 25 to 50%. Mean nectar volumes and concentrations showed significant differences between freely exposed flowers and covered flowers, which had been isolated from flower visitors 24 h prior to nectar studies. Both the amount and quality of nectar were affected by microclimatic conditions and soil properties and varied between populations at different habitats. In the silver lime-flowering ash rock-forest association mean nectar volumes and concentrations were lower than in a typical sessile oak-hornbeam association on three occasions, the difference being significant in two cases. During full bloom, the date of sampling did not have a profound effect on either nectar volume or concentration.

  15. Tree height growth indicating drought and nitrogen deposition

    Science.gov (United States)

    Gulyás, Krisztina; Berki, Imre

    2016-04-01

    Several studies have been reported the increasing trends of forest growth in Europe in the last decades. Sites, where the water is not limiting factor, the increasing carbon dioxide (CO2) concentration and high nitrogen deposition influenced accelerated tree height growth. However few researches show that the drying climate conditions and water deficit cause slow/not definite trend of tree height growth in forests. The aim of our study presents the effects of drying climate and surplus nitrogen on height growth of sessile oak (Quercus petraea). Almost 50 sessile oak stands (with zonal site condition) have been measured along a humid-arid climatic transect in Hungary. Top heights of the trees are the best dendrometric parameter for indicating the changing site conditions. Observed top heights dates were compared with 50-years climate condition along the humid-arid climatic transect. Tree height growth in the dry and mesic section of climatic gradient slowed at the last 4 decades, because of the increasing frequency of dry periods. Accelerated height growth were measured in the mesic and humid section of transect, where the nitrogen deposition due to local air pollution were higher than the background deposition. These results draw attention to the importance of the drying climate and surplus nitrogen in the global changes. Keywords: climate change impacts, drought periods, surplus deposition, tree height growth Acknowledgements: Research is supported by the "Agroclimate.2" (VKSZ_12-1-2013-0034) EU-national joint funded research project.

  16. Slip-stick wetting and large contact angle hysteresis on wrinkled surfaces.

    Science.gov (United States)

    Bukowsky, Colton; Torres, Jessica M; Vogt, Bryan D

    2011-02-15

    Wetting on a corrugated surface that is formed via wrinkling of a hard skin layer formed by UV oxidation (UVO) of a poly(dimethylsiloxane) (PDMS) slab is studied using advancing and receding water contact angle measurements. The amplitude of the wrinkled pattern can be tuned through the pre-strain of the PDMS prior to surface oxidation. These valleys and peaks in the surface topography lead to anisotropic wetting by water droplets. As the droplet advances, the fluid is free to move along the direction parallel to the wrinkles, but the droplet moving orthogonal to the wrinkles encounters energy barriers due to the topography and slip-stick behavior is observed. As the wrinkle amplitude increases, anisotropy in the sessile droplet increases between parallel and perpendicular directions. For the drops receding perpendicular to the wrinkles formed at high strains, the contact angle tends to decrease steadily towards zero as the drop volume decreases, which can result in apparent hysteresis in the contact angle of over 100°. The wrinkled surfaces can exhibit high sessile and advancing contact angles (>115°), but the receding angle in these cases is generally vanishing as the drop is removed. This effect results in micrometer sized drops remaining in the grooves for these highly wrinkled surfaces, while the flat analogous UVO-treated PDMS shows complete removal of all macroscopic water drops under similar conditions. These wetting characteristics should be considered if these wrinkled surfaces are to be utilized in or as microfluidic devices.

  17. The role of habitat complexity in community development is mediated by resource availability.

    Directory of Open Access Journals (Sweden)

    Rachel S Smith

    Full Text Available Habitat complexity strongly affects the structure and dynamics of ecological communities, with increased complexity often leading to greater species diversity and abundance. However, habitat complexity changes as communities develop, and some species alter their environment to themselves provide habitat for other species. Most experimental studies manipulate basal substrate complexity, and while the importance of complexity likely changes during community development, few studies have examined the temporal dynamics of this variable. We used two experiments to quantify the importance of basal substrate complexity to sessile marine invertebrate community development through space and time. First, we compared effects of substrate complexity at 70 sites across ten estuaries. Sites differed in recruitment and community development rates, and after three months provided spatial variation in community development stage. Second, we tested for effects of substrate complexity at multiple times at a single site. In both experiments, complexity affected marine sessile invertebrate community composition in the early stages of community development when resource availability was high. Effects of complexity diminished through time as the amount of available space (the primary limiting resource declined. Our work suggests the presence of a bare-space threshold, at which structural complexity of the basal substrate is overwhelmed by secondary biotic complexity. This threshold will be met at different times depending on local recruitment and growth rates and is likely to vary with productivity gradients.

  18. Analysis Of Macrobenthic Community Structure In Relation To Different Environmental Conditions In Three Harbours In The North Tyrrhenian Sea (Italy. Preliminary Study

    Directory of Open Access Journals (Sweden)

    R. BEDINI

    2012-12-01

    Full Text Available Studies on benthic communities are being widely used in monitoring pollution effects, using both the methodologies provided from the national laws in various countries and experimental innovative methodologies of research. We have carried out a preliminary study on macrobenthic communities (zoobenthos and phytobenthos in three harbours, one of which (Piombino receives wastewater from industry and is also subject to heavy shipping traffic. The other two (Porto Santo Stefano and Portoferraio enjoy great tourist traffic but no industrial waste, and they have been selected in order to find possible differences between populations of animals present in unpolluted and polluted areas. The results show that there are no outstanding differences in the sessile and sedentary bentological population parameters of the studied harbours. We probably do not have an adequate historical data set of the species living in the study areas to detect the effects of pollution, and the sessile living animal species we found may have adapted to the current situation, since living species typical of very clean waters were found.

  19. Chloroplast DNA Diversity of Oak Species in Eastern Romania

    Directory of Open Access Journals (Sweden)

    Ioan Calin MOLDOVAN

    2010-12-01

    Full Text Available The chloroplast DNA of 34 sessile oak (Quercus petraea and 27 pedunculate oak (Q. robur populations covering the entire natural distribution of the two oak species in Eastern Romania was investigated using four large regions of the chloroplast genome by PCR and RFLP technique. A total of seven chloroplast DNA haplotypes sensu lato have been observed by analysing 305 mature trees. However, due to the high resolution of the electrophoresis method a total of 22 chloroplast variants could have been detected, with new mutations and fragment combinations in two of the amplified regions: psbC/trnD and trnT/trnF. All of the haplotypes belong to the phylogenetic lineages A and E, which originate from the Balkan Peninsula. Most of genetic diversity is distributed among populations (GST=0.779. The chloroplast DNA haplotypes are shared by the two oak species. Different dispersal abilities may explain the higher value of genetic differentiation among populations in sessile oak than in pedunculate oak.

  20. Significance of investigating allelopathic interactions of marine organisms in the discovery and development of cytotoxic compounds.

    Science.gov (United States)

    Singh, Anshika; Thakur, Narsinh L

    2016-01-01

    Marine sessile organisms often inhabit rocky substrata, which are crowded by other sessile organisms. They acquire living space via growth interactions and/or by allelopathy. They are known to secrete toxic compounds having multiple roles. These compounds have been explored for their possible applications in cancer chemotherapy, because of their ability to kill rapidly dividing cells of competitor organisms. As compared to the therapeutic applications of these compounds, their possible ecological role in competition for space has received little attention. To select the potential candidate organisms for the isolation of lead cytotoxic molecules, it is important to understand their chemical ecology with special emphasis on their allelopathic interactions with their competitors. Knowledge of the ecological role of allelopathic compounds will contribute significantly to an understanding of their natural variability and help us to plan effective and sustainable wild harvests to obtain novel cytotoxic chemicals. This review highlights the significance of studying allelopathic interactions of marine invertebrates in the discovery of cytotoxic compounds, by selecting sponge as a model organism. PMID:26362501