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Sample records for cecropia pachystachya trec

  1. Effects of different temperatures on the performance of seeds germination of Cecropia pachystachya Trec. (Cecropiaceae

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    Rosemari Pilati

    1999-01-01

    Full Text Available Seed germination of Cecropia pachystachya Trec. was investigated at 25, 30, and 35ºC using fluorescent day lights. Ten replicates each of 200 seeds were used in each thermal treatment. Germitest® paper, CEL-065®, and 11x11x5 cm Gerbox® were also used. The frequencies of radicle protrusions were counted at consecutive two hour intervals. The cumulative frequencies were combined with the distribution of Weibull using the following model: Y = M (1 - exp (-(t/bc. The best performance was achieved with the temperature of 30ºC ( M, 95.29%. Time to achieve 60.23% of seed germination (0.6321 x 95.29% was 99.35 h with a spread of 7.19. All model/data set combinations had close to linear.Com o objetivo de avaliar o desempenho germinativo de sementes de Cecropia pachystachya Trec., sob diferentes níveis de temperatura, foi realizado um experimento com sementes coletadas em fragmentos da Floresta Estacional Semidecidual Submontana e Aluvial, localizados na planície de inundação do alto rio Paraná. As sementes foram submetidas a temperaturas constantes de 25ºC, 30ºC e 35ºC. Luzes fluorescentes do tipo "luz do dia" foram mantidas acesas durante todo o período experimental. Cada tratamento consistiu de 10 repetições de 200 sementes distribuídas de maneira uniforme sobre papel especial de germinação, CEL-065, em caixas de plástico transparente do tipo gerbox medindo 11x11x5 cm. As freqüências germinativas foram avaliadas em intervalos consecutivos de duas horas. As freqüências acumuladas foram combinadas com o seguinte modelo da função de Weibull: Y = M ( 1- exp (-(t/bc. Os resultados indicaram que o melhor desempenho germinativo foi alcançado com a temperatura de 30ºC. A porcentagem máxima de germinação (M foi igual a 95,29%, e o tempo (b para a ocorrência de uma porcentagem de germinação igual a 60,23% (0,6321 x 95,29% foi igual a 99,35 horas. A dispersão das germinações (c durante o tempo de avaliação foi igual a 7

  2. Tolerância à inundação de Cecropia pachystachya Trec. (Cecropiaceae): aspectos ecofisiológicos e morfoanatômicos Flood tolerance in Cecropia pachystachya Trec. (Cecropiaceae): ecophysiological and morpho-anatomical aspects

    OpenAIRE

    Claudia Universal Neves Batista; Moacir Eurípedes Medri; Edmilson Bianchini; Cristiano Medri; José Antonio Pimenta

    2008-01-01

    Visando elucidar aspectos da tolerância à hipoxia, plantas de Cecropia pachystachya foram submetidas a 30 dias de inundação. O crescimento e desenvolvimento, a condutância estomática, a fotossíntese e a morfo-anatomia foram avaliadas. A taxa de crescimento relativo (TCR) da raiz e do caule foi inferior em plantas alagadas, não havendo diferenças nesta taxa para as folhas e para a planta inteira. A não variação na TCR das folhas pode ter sido em função da maior esclerofilia foliar das plantas ...

  3. PHOSPHATE AND INOCULATION WITH ARBUSCULAR MYCORRHIZAL FUNGI ON THE GROWTH OF Cecropia pachystachya (Trec SEEDLINGS FÓSFORO E INOCULAÇÃO COM FUNGOS MICORRÍZICOS ARBUSCULARES NO ESTABELECIMENTO DE MUDAS DE EMBAÚBA (Cecropia pachystachya Trec

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    Marco Aurélio Carbone Carneiro

    2007-09-01

    Full Text Available

    The objective of this study was to evaluate the effect of the inoculation with arbuscular mycorrhizal fungi (FMA in different levels of P2O5 on the growth of Cecropia pachystachya seedlings in the field. The study consisted of a 5x2 factorial with five levels of P2O5 (zero, 85, 170, 255 and 340 mg.kg-1, with and ithout inoculation with a mixture of FMA. It was used four replications, each one with twelve seedlings. The seeds were sowed in plastic tubes with capacity of 50 cm3 of substratum and stored for 120 days. After this period the seedlings were transplanted to the field, where they remained for another 150 days. Seedling diameter and height were measured at 60 and 120 days, aerial part and root dry matter, and arbuscular mycorrhizal colonization. Diameter, height, leaf area, aerial part dry matter and the number of surviving seedlings were determined after 150 days. None of the factors tested had any effect on seedling growth with one exception; inoculated plants with FMA had more root dry matter. Plants inoculated with smaller doses of P2O5 showed a larger percentage of surviving individuals and more vigorous seedlings. Results suggest that in low fertility soils of and subject to the hydric stress the C. pachystachya seedlings should be inoculated with FMA.

    KEY-WORDS: Native vegetation; mycorrhiza fungi; native species; seedling production; inoculation.

    O objetivo deste estudo foi avaliar o efeito da inoculação com fungos micorrízicos arbusculares (FMA em diferentes doses de P2O5 na formação de mudas de embaúba (Cecropia pachystachya e no seu estabelecimento em campo. O estudo constou de um experimento fatorial 5x2, sendo cinco doses de P2O5

  4. Herança e desequilíbrio de ligação em sete locos isoenzimáticos de Cecropia pachystachya. Inheritance and linkage disequilibrium in sevem isozymes loci of Cecropia pachystachya.

    Directory of Open Access Journals (Sweden)

    Luciano Arruda RIBAS

    2004-12-01

    Full Text Available Seis sistemas enzimáticos (ACP,G6PDH, IDH, PGI, PGM e SKDH, codificandosete locos polimórficos (Acp-3, G6pdh-1, Idh-1,Pgi-2, Pgm-1, Pgm-2 e Skdh-1, foram investigadospara a herança e desequilíbrio de ligação emCecropia pachystachya Trec. A herança mendelianafoi confirmada para todos os locos avaliados.Desvios significativos da razão de segregaçãoesperada 1:1 foram detectados apenas em umaprogênies de árvore heterozigótica. O desequilíbriode ligação foi examinado para 21 pares de locosisoenzimáticos, não sendo detectados desequilíbriosentre nenhum deles e, assim, estes podem serutilizados em subseqüentes estudos do sistemade reprodução, diversidade e estrutura genética deC. pachystachya.

  5. Preventive Effect of Cecropia pachystachya Against Ketamine-Induced Manic Behavior and Oxidative Stress in Rats.

    Science.gov (United States)

    Gazal, Marta; Kaufmann, Fernanda N; Acosta, Bruna A; Oliveira, Pathise Souto; Valente, Matheus R; Ortmann, Caroline Flach; Sturbelle, Régis; Lencina, Claiton L; Stefanello, Francieli M; Kaster, Manuella P; Reginatto, Flávio Henrique; Ghisleni, Gabriele

    2015-07-01

    Cecropia species are widely used in traditional medicine by its anti-diabetic, anti-hypertensive and anti-inflammatory properties. In the present study, we investigated the neuroprotective and antioxidant effects of the crude aqueous extract from Cecropia pachystachya leaves in a rat model of mania induced by ketamine. The results indicated that ketamine treatment (25 mg/kg i.p., for 8 days) induced hyperlocomotion in the open-field test and oxidative damage in prefrontal cortex and hippocampus, evaluated by increased lipid peroxidation, carbonyl protein formation and decreased total thiol content. Moreover, ketamine treatment reduced the activity of the antioxidant enzymes superoxide dismutase and catalase in hippocampus. Pretreatment of rats with C. pachystachya aqueous extract (200 and 400 mg/kg p.o., for 14 days) or with lithium chloride (45 mg/kg p.o., for 14 days, used as a positive control) prevented both behavioral and pro-oxidant effects of ketamine. These findings suggest that C. pachystachya might be a useful tool for preventive intervention in bipolar disorder, reducing the episode relapse and the oxidative damage associated with the manic phase of this disorder . PMID:25998886

  6. Frugivoria de morcegos (Mammalia, Chiroptera em Cecropia pachystachya (Urticaceae e seus efeitos na germinação das sementes

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    Therys Midori Sato

    2008-01-01

    Full Text Available Os morcegos frugívoros são componentes fundamentais na manutenção e regeneração de florestas tropicais, pois ao se alimentarem, promovem a mobilidade das sementes dos frutos em que se alimentaram. Muito se discute sobre os efeitos da passagem das sementes no trato digestivo dos morcegos sobre a taxa e velocidade de germinação. O objetivo deste trabalho foi examinar a dieta das espécies de morcegos frugívoros na Estação Experimental de Itirapina para descobrir quais utilizam significativamente os frutos de Cecropia pachystachya. Foi testada a importância dos quirópteros na dispersão e germinação desta espécie de planta. Para isso, os morcegos foram capturados no período de agosto de 2005 a julho de 2006, suas fezes foram recolhidas e as sementes de C. pachystachya separadas. Os testes de germinação foram feitos para duas espécies de morcegos, Artibeus liuratus e Platyrrhinus lineatus, e suas taxas de germinação comparadas com amostras de sementes coletadas da planta (controle. Foram feitos cinco repetições com 30 sementes em cada gerbox para cada teste. Os testes foram realizados em câmaras germinadoras " Mangelsdorf" , com temperatura de 25°C, luminosidade e umidade constante por 40 dias. Houve uma alta porcentagem de germinação das sementes encontradas em A. lituratus (79,3% e não diferiu estatisticamente das sementes controle (76%. Esses resultados foram superiores a P. lineatus (52%. Em relação ao Índice de Velocidade de Germinação (IVG, esse resultado foi semelhante, sendo 2,73 para A. lituratus, 2,66 para o controle e 1,80 para P. lineatus. Com esse resultado, tem-se que a passagem das sementes de C. pachystachya pelos morcegos não aumentou a porcentagem, nem a velocidade de germinação delas, quando comparado com o controle, sendo até menor para P. lineatus. Com os resultados obtidos, conclui-se que, o efeito da passagem do trato digestivo dos morcegos na germinação pode sofrer influências que

  7. Nest structure and occurrence of three species of Azteca (Hymenoptera, Formicidae in Cecropia pachystachya (Urticaceae in non-floodable and floodable pantanal areas Arquitetura de ninho e ocorrência de três espécies de Azteca (Hymenoptera, Formicidae em Cecropia pachystachya (Urticaceae em ambiente alagável e não alagável no Pantanal

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    Alexsandro S. Vieira

    2010-01-01

    Full Text Available Thirty Cecropia pachystachya trees were examined in non-floodable and floodable areas to investigate the association between C. pachystachya and Azteca ants in the Pantanal of Mato Grosso do Sul, Brazil. The species Azteca ovaticeps, Azteca isthmica, and Azteca alfari were found nesting inside domatia of C. pachystachya. A. ovaticeps was the most frequent species in the trees in the floodable area, while A. isthmica and A. alfari, in the non-floodable area. A. ovaticeps and A. isthmica maintained more entrance/exit holes in comparison to A. alfari. All Azteca species maintained entrance/exit holes in the closest domatia to the apical area of the branch, due to proximity to Müllerian and pearl bodies, suggesting that these species of Azteca were influenced by their environment during evolution and became specialized. All internodal septa of each examined branch were perforated by ants, indicating the branches were inhabited by a single colony.Foram analisadas 30 plantas de Cecropia pachystachya em cada ambiente alagável e não alagável no Pantanal sul-mato-grossense, Brasil, com o objetivo de investigar a associação entre formigas Azteca e C. pachystachya. Foram encontradas as espécies Azteca ovaticeps, Azteca isthmica e Azteca alfari nidificando nas domáceas da planta. A. ovaticeps foi mais frequente em plantas de área alagável, enquanto A. isthmica e A. alfari em plantas em área não alagável. A. ovaticeps e A. isthmica apresentaram maior quantidade de orifícios de entrada/saída em relação à A. alfari e todas as espécies mantêm próximo da região apical do ramo, orifícios de entrada/saída nas domáceas, devido à proximidade com os corpúsculos müellerianos e pérola. Isto é, essas espécies de Azteca especializaram-se ao longo da evolução influenciadas pelo ambientes. Todos os septos internodais de cada ramo analisados apresentaram-se perfurados pelas formigas, sugerindo que os mesmos são habitados por uma única colônia.

  8. Taxa e velocidade de germinação de sementes de Cecropia pachystachya Trécul (Cecropiaceae ingeridas por Artibeus lituratus (Olfers, 1818 (Chiroptera: Phyllostomidae = Germination rate and velocity of seeds of Cecropia pachystachya Trécul (Cecropiaceae eaten by Artibeus lituratus (Olfers, 1818 (Chiroptera: Phyllostomidae

    Directory of Open Access Journals (Sweden)

    Ricardo Anghinoni Bocchese

    2007-10-01

    Full Text Available O objetivo deste trabalho foi verificar se o morcego frugívoro Artibeus lituratus pode ser considerado indutor na germinação de sementes de Cecropia pachystachya, sendo avaliadas a taxa e a velocidade de germinação das sementes em diferentes condições. Osmorcegos e os frutos foram coletados na região central de Campo Grande, Estado do Mato Grosso do Sul; o experimento foi dividido em cinco tratamentos. O primeiro contou com sementes retiradas dos frutos; o segundo, com sementes retiradas das fezes, e o terceirodividido em três tratamentos ácidos, com concentrações de pH 1, 2 e 3. As sementes que passaram pelo sistema digestório dos animais germinaram com maior velocidade (p 0,05 quandocomparada às sementes sem tratamento. O tratamento com pH igual a 3 foi estatisticamente igual ao grupo sem tratamento e ao grupo experimental, com sementes retiradas das fezes, indicando o valor aproximado da concentração dos ácidos estomacais desta espéciefrugívora. Conclui-se que Artibeus lituratus pode ser considerado indutor do aumento da velocidade de germinação nas sementes desta espécie vegetal, refletindo na importância desta espécie frugívora na manutenção ecológica dos ecossistemas tropicais, principalmenteem áreas de Cerrado.The objective with this study was to verify whether frugivorous bat Artibeus lituratus can be considered an efficient germination inducer for Cecropia pachystachya seeds. Bats and fruits were collected in Campo Grande (Mato Grosso do Sul State, Brazil, with the experimentbeing divided in five treatments: one composed by seeds taken from natural fresh fruits, another with seeds taken from the bats’ excrements, and the last one sub-divided in three sub-groups with different acid treatments that corresponded to pH 1, 2 and 3. The seeds that passed through the digestive tract of the animals presented a higher germination velocity index (p 0.05 when compared with the seeds without any treatment. The

  9. Enriched Flavonoid Fraction from Cecropia pachystachya Trécul Leaves Exerts Antidepressant-like Behavior and Protects Brain Against Oxidative Stress in Rats Subjected to Chronic Mild Stress.

    Science.gov (United States)

    Ortmann, Caroline F; Réus, Gislaine Z; Ignácio, Zuleide M; Abelaira, Helena M; Titus, Stephanie E; de Carvalho, Pâmela; Arent, Camila O; Dos Santos, Maria Augusta B; Matias, Beatriz I; Martins, Maryane M; de Campos, Angela M; Petronilho, Fabricia; Teixeira, Leticia J; Morais, Meline O S; Streck, Emilio L; Quevedo, João; Reginatto, Flávio H

    2016-05-01

    The purpose of this study was to assess the effect of an enriched C-glycosyl flavonoids fraction (EFF-Cp) from Cecropia Pachystachya leaves on behavior, mitochondrial chain function, and oxidative balance in the brain of rats subjected to chronic mild stress. Male Wistar rats were divided into experimental groups (saline/no stress, saline/stress, EFF-Cp/no stress, and EFF-Cp/stress). ECM groups were submitted to stress for 40 days. On the 35th ECM day, EFF-Cp (50 mg/kg) or saline was administrated and the treatments lasted until the 42nd day. On the 41st and 42nd days, the animals were submitted to the splash test and the forced swim test. After these behavioral tests, the enzymatic activity of mitochondrial chain complexes and oxidative stress were analyzed. EFF-Cp reversed the depressive-like behavior induced by ECM. It also reversed the increase in thiobarbituric acid reactive species, myeloperoxidase activity, and nitrite/nitrate concentrations in some brain regions. The reduced activities of the antioxidants superoxide dismutase and catalase in some brain regions were also reversed by EFF-Cp. The most pronounced effect of EFF-Cp on mitochondrial complexes was an increase in complex IV activity in all studied regions. Thus, it is can be concluded that EFF-Cp exerts an antidepressant-like effect and that oxidative balance may be an important physiological process underlying these effects. PMID:26762362

  10. Taxa e velocidade de germinação de sementes de Cecropia pachystachya Trécul (Cecropiaceae ingeridas por Artibeus lituratus (Olfers, 1818 (Chiroptera: Phyllostomidae - DOI: 10.4025/actascibiolsci.v29i4.879 Germination rate and velocity of seeds of Cecropia pachystachya Trécul (Cecropiaceae eaten by Artibeus lituratus (Olfers, 1818 (Chiroptera: Phyllostomidae - DOI: 10.4025/actascibiolsci.v29i4.879

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    Eliane Cristine Vicente

    2008-02-01

    Full Text Available O objetivo deste trabalho foi verificar se o morcego frugívoro Artibeus lituratus pode ser considerado indutor na germinação de sementes de Cecropia pachystachya, sendo avaliadas a taxa e a velocidade de germinação das sementes em diferentes condições. Os morcegos e os frutos foram coletados na região central de Campo Grande, Estado do Mato Grosso do Sul; o experimento foi dividido em cinco tratamentos. O primeiro contou com sementes retiradas dos frutos; o segundo, com sementes retiradas das fezes, e o terceiro dividido em três tratamentos ácidos, com concentrações de pH 1, 2 e 3. As sementes que passaram pelo sistema digestório dos animais germinaram com maior velocidade (p 0,05 quando comparada às sementes sem tratamento. O tratamento com pH igual a 3 foi estatisticamente igual ao grupo sem tratamento e ao grupo experimental, com sementes retiradas das fezes, indicando o valor aproximado da concentração dos ácidos estomacais desta espécie frugívora. Conclui-se que Artibeus lituratus pode ser considerado indutor do aumento da velocidade de germinação nas sementes desta espécie vegetal, refletindo na importância desta espécie frugívora na manutenção ecológica dos ecossistemas tropicais, principalmente em áreas de Cerrado.The objective with this study was to verify whether frugivorous bat Artibeus lituratus can be considered an efficient germination inducer for Cecropia pachystachya seeds. Bats and fruits were collected in Campo Grande (Mato Grosso do Sul State, Brazil, with the experiment being divided in five treatments: one composed by seeds taken from natural fresh fruits, another with seeds taken from the bats’ excrements, and the last one sub-divided in three sub-groups with different acid treatments that corresponded to pH 1, 2 and 3. The seeds that passed through the digestive tract of the animals presented a higher germination velocity index (p 0.05 when compared with the seeds without any treatment. The

  11. An HPLC-DAD method to quantification of main phenolic compounds from leaves of Cecropia species

    International Nuclear Information System (INIS)

    An efficient and reproducible HPLC-DAD method was developed and validated for the simultaneous quantification of major compounds (chlorogenic acid, isoorientin, orientin and isovitexin) present in the leaves of two Cecropia species, C. glaziovii and C. pachystachya. From the leaves of C. glaziovii and C. pachystachya were isolated the C-glycosylflavones isoorientin and isovitexin and identified on both species chlorogenic acid (3-O-caffeoylquinic acid) and the O-glycosylflavonol isoquercitrin. The C-glycosylflavone orientin was isolated only from C. pachystachya. Chlorogenic acid was the major compound in both species (11.1 mg g-1 of extract of C. glaziovii and 27.2 mg g-1 of extract of C. pachystachya) and for the flavonoids quantified, isovitexin was the main C-glycosylflavonoid for C. glaziovii (4.6 mg g-1 of extract) and isoorientin the main one for C. pachystachya (17.3 mg g-1 of extract). (author)

  12. University of glasgow at TREC 2006

    DEFF Research Database (Denmark)

    Lioma, Christina; Macdonald, C.; Plachouras, V.;

    2006-01-01

    new effective and low-cost models, which combine evidence from document structure and capture term dependence and proximity, respectively. Additionally, in the Terabyte track, we improve on our query expansion mechanism on fields, presented in TREC 2005, with a new and more refined technique, which......In TREC 2006, we participate in three tasks of the Terabyte and Enterprise tracks. We continue experiments using Terrier1, our modular and scalable Information Retrieval (IR) platform. Furthering our research into the Divergence From Randomness (DFR) framework of weighting models, we introduce two......-independent evidence, in the form of prior probabilities. In the Enterprise track, we test our new voting model for expert search. Our experiments focus on the need for candidate length normalisation, and on how retrieval performance can be enhanced by applying retrieval techniques to the underlying ranking of...

  13. Predicting human age with bloodstains by sjTREC quantification.

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    Xue-ling Ou

    Full Text Available The age-related decline of signal joint T-cell receptor rearrangement excision circles (sjTRECs in human peripheral blood has been demonstrated in our previous study and other reports. Until now, only a few studies on sjTREC detection in bloodstain samples were reported, which were based on a small sample of subjects of a limited age range, although bloodstains are much more frequently encountered in forensic practice. In this present study, we adopted the sensitive Taqman real-time quantitative polymerase chain reaction (qPCR method to perform sjTREC quantification in bloodstains from individuals ranging from 0-86 years old (n = 264. The results revealed that sjTREC contents in human bloodstains were declined in an age-dependent manner (r = -0.8712. The formula of age estimation was Age = -7.1815Y-42.458 ± 9.42 (Y dCt(TBP-sjTREC; 9.42 standard error. Furthermore, we tested for the influence of short- or long- storage time by analyzing fresh and stored bloodstains from the same individuals. Remarkably, no statistically significant difference in sjTREC contents was found between the fresh and old DNA samples over a 4-week of storage time. However, significant loss (0.16-1.93 dCt in sjTREC contents was detected after 1.5 years of storage in 31 samples. Moreover, preliminary sjTREC quantification from up to 20-year-old bloodstains showed that though the sjTREC contents were detectable in all samples and highly correlated with donor age, a time-dependent decrease in the correlation coefficient r was found, suggesting the predicting accuracy of this described assay would be deteriorated in aged samples. Our findings show that sjTREC quantification might be also suitable for age prediction in bloodstains, and future researches into the time-dependent or other potential impacts on sjTREC quantification might allow further improvement of the predicting accuracy.

  14. Overview of the TREC 2013 Federated Web Search Track

    NARCIS (Netherlands)

    Demeester, Thomas; Trieschnigg, Dolf; Nguyen, Dong; Hiemstra, Djoerd

    2014-01-01

    The TREC Federated Web Search track is intended to promote research related to federated search in a realistic web setting, and hereto provides a large data collection gathered from a series of online search engines. This overview paper discusses the results of the first edition of the track, FedWeb

  15. Overview of the Sixth Text Retrieval Conference (TREC-6).

    Science.gov (United States)

    Voorhees, Ellen M.; Harman, Donna

    2000-01-01

    Provides an overview of the Text Retrieval Conference (TREC), a workshop series designed to encourage research on text retrieval for realistic applications by providing large test collections and uniform scoring procedures. Highlights include routing tasks; Chinese language retrieval; cross-language information retrieval; filtering; high…

  16. Overview of the TREC 2014 Federated Web Search Track

    OpenAIRE

    Demeester, Thomas; Trieschnigg, Dolf; Nguyen, Dong-Phuong; Zhou, Ke; Hiemstra, Djoerd

    2014-01-01

    The TREC Federated Web Search track facilitates research in topics related to federated web search, by providing a large realistic data collection sampled from a multitude of online search engines. The FedWeb 2013 challenges of Resource Selection and Results Merging challenges are again included in FedWeb 2014, and we additionally introduced the task of vertical selection. Other new aspects are the required link between the Resource Selection and Results Merging, and the importance of diversi...

  17. Overview of the TREC 2013 federated web search track

    OpenAIRE

    DEMEESTER, Thomas; Trieschnigg, Dolf; Nguyen, Dong Van; Hiemstra, Djoerd

    2013-01-01

    The TREC Federated Web Search track is intended to promote research related to federated search in a realistic web setting, and hereto provides a large data collection gathered from a series of online search engines. This overview paper discusses the results of the first edition of the track, FedWeb 2013. The focus was on basic challenges in federated search: (1) resource selection, and (2) results merging. After an overview of the provided data collection and the relevance judgments for the ...

  18. THE TEST OF APPLYING RADAR TREC WIND IN THREE-DIMENSIONAL VARIATIONAL ASSIMILATION

    Institute of Scientific and Technical Information of China (English)

    WAN Qi-lin; XUE Ji-shan; CHEN Zhi-tong; LIU Chun-xia

    2006-01-01

    The application of radar-derived TREC wind to 3DVAR assimilation system of GRAPeS-3DVar developed by Chinese Academy of Meteorological Sciences is introduced. The resulting fundamental feature is estimated when radar TREC wind is assimilated into GRAPeS-3DVar system. It was found that radar TREC wind has better potential of the application in GRAPeS-3DVar system and can effectively improve the analyzed results. Moreover a numerical experiment is performed in which tropical cyclones make landfall and transform;it also showed that the predicted effect can be improved when the radar TREC wind is added into GRAPeS-3DVar system.

  19. TREC Based Newborn Screening for Severe Combined Immunodeficiency Disease : A Systematic Review

    NARCIS (Netherlands)

    van der Spek, Jet; Groenwold, Rolf H. H.; van der Burg, Mirjam; van Montfrans, JM

    2015-01-01

    Background Newborn screening (NBS) by quantifying T cell receptor excision circles (TRECs) in neonatal dried blood spots (DBS) enables early diagnosis of severe combined immunodeficiency disease (SCID). In recent years, different screening algorithms for TREC based SCID screening were reported. Purp

  20. Comparison of light-regulated seed germination in Ficus spp. and Cecropia obtusifolia: ecological implications.

    Science.gov (United States)

    Vázquez-Yanes, C; Rojas-Aréchiga, M; Sánchez-Coronado, M E; Orozco-Segovia, A

    1996-10-01

    The major components of annual seed deposition in the rain forest at Los Tuxtlas, Veracruz, México are seeds of the pioneer tree species Cecropia obtusifolia and those of some species of Ficus. Cecropia obtusifolia Bertol. forms a relatively persistent viable soil seed bank, whereas seeds of Ficus are seldom found in the soil. Both genera require light for seed germination; however, the species differ in their germination responses to far red (FR) light under laboratory and field conditions. Seeds of C. obtusifolia did not germinate in low red/far red (R/FR) or pure FR, whereas seeds of the Ficus species did. This suggests that Ficus seeds do not become dormant under the light conditions (low R/FR ratio) beneath the leaf canopy of the rain forest. This difference may explain why the species differ in their presence in the soil seed bank. PMID:14871679

  1. Cecropia peltata accumulates starch or soluble glycogen by differentially regulating starch biosynthetic genes

    OpenAIRE

    Bischof, Sylvain; Umhang, Martin; Eicke, Simona; Streb, Sebastian; Qi, Weihong; Zeeman, Samuel C.

    2013-01-01

    The branched glucans glycogen and starch are the most widespread storage carbohydrates in living organisms. The production of semicrystalline starch granules in plants is more complex than that of small, soluble glycogen particles in microbes and animals. However, the factors determining whether glycogen or starch is formed are not fully understood. The tropical tree Cecropia peltata is a rare example of an organism able to make either polymer type. Electron micrographs and quantitative measu...

  2. Myxomycetes occurring on Cecropia adenopus (Cecropiaceae in fragments of Atlantic Rainforest Myxomycetes ocorrentes em Cecropia adenopus (Cecropiaceae em fragmentos de Floresta Atlântica

    Directory of Open Access Journals (Sweden)

    Andrea Carla Caldas Bezerra

    2011-03-01

    Full Text Available Cecropia adenopus (Ambay pumpwood is a frequent native species on the edges of woods and clearings and is considered a pioneer species in re-colonized areas. Despite its distribution from Mexico to Argentina, this substrate has never been examined in detail regarding the presence of Myxomycetes. In the present study, the myxobiota associated with leaf debris of C. adenopus was investigated in two Atlantic Rainforest conservation units located in the Brazilian state of Rio Grande do Norte. Five specimens and one plasmodium were obtained directly from the field and 87 were developed in 43.7% of 200 moist-chamber cultures set up separately with blades and petioles. Fifteen species were identified and illustrated. The two predominant groups were representatives of Trichiales and Physarales. Didymium columella-cavum was recorded for the second time in Brazil and in the world.Cecropia adenopus (embaúba é uma espécie nativa, frequente em bordas de matas e clareiras e tida como espécie pioneira em áreas recolonizadas. Apesar de ocorrer desde o México até a Argentina este substrato nunca tinha sido examinado com detalhe quanto à presença de Myxomycetes. No presente estudo, a mixobiota associada a folhas mortas de C. adenopus foi investigada em duas Unidades de Conservação da Floresta Atlântica, situadas no estado do Rio Grande do Norte. Cinco espécimes e um plasmódio foram obtidos diretamente no campo e 87 desenvolveram-se em 43,7% de 200 câmaras-úmidas, montadas com lâminas foliares e pecíolos separadamente. Quinze espécies de Myxomycetes foram identificadas e ilustradas. Os dois grupos predominantes pertencem às ordens Trichiales e Physarales. Didymium columella-cavum foi encontrado pela segunda vez no Brasil e no mundo.

  3. PolarTREC-Teachers and Researchers Exploring and Collaborating: Bringing Polar Research to the Classroom

    Science.gov (United States)

    Warnick, W. K.; Warburton, J.; Breen, K.; Wiggins, H. V.; Larson, A.; Behr, S.

    2006-12-01

    PolarTREC-Teachers and Researchers Exploring and Collaborating is a three-year (2007-2009) teacher professional development program that pairs K-12 teachers with researchers to improve science education through authentic polar research experience. PolarTREC builds on the strengths of the existing TREC program in the Arctic, an NSF supported program managed by the Arctic Research Consortium of the US (ARCUS), to embrace a wider range of research activities in the Arctic and Antarctic. PolarTREC uses a Teacher Research Experience (TRE) model to foster the integration of research and education to produce a legacy of long-term teacher-researcher collaborations, improved teacher content knowledge through experiences in scientific inquiry, and broad public interest and engagement in polar science. PolarTREC will enable thirty-six teachers to spend two to six weeks in the Arctic or Antarctic, working closely with researchers investigating a wide range of topics such as sea-ice dynamics, terrestrial ecology, marine biology, atmospheric chemistry, and long-term climate change. With the help of their host researcher and the research team, teachers will develop the experience and tools necessary to teach science through scientific inquiry and investigation based on real-world experiences. While in the field, teachers and researchers will communicate extensively with their colleagues, communities, and hundreds of students of all ages across the globe, using a variety of tools including satellite phones, online journals, podcasts and interactive "Live from IPY" calls and web-based seminars. The online outreach elements of the project convey these experiences to a broad audience far beyond the classrooms of the PolarTREC teachers. In addition to field research experiences, PolarTREC will support teacher professional development and a sustained community of teachers, scientists, and the public through workshops, Internet seminars, an e-mail listserve, and ongoing teacher

  4. Retrospective TREC testing of newborns with Severe Combined Immunodeficiency and other primary immunodeficiency diseases

    Directory of Open Access Journals (Sweden)

    O. Jilkina

    2014-01-01

    Full Text Available In Manitoba, Canada, the overall incidence of Severe Combined Immunodeficiency (SCID is three-fold higher than the national average, with SCID overrepresented in two population groups: Mennonites and First Nations of Northern Cree ancestries. T-cell receptor excision circle (TREC assay is being used increasingly for neonatal screening for SCID in North America. However, the majority of SCID patients in Manitoba are T-cell-positive. Therefore it is likely that the TREC assay will not identify these infants. The goal of this study was to blindly and retrospectively perform TREC analysis in confirmed SCID patients using archived Guthrie cards. Thirteen SCID patients were tested: 5 T-negative SCID (3 with adenosine deaminase deficiency, 1 with CD3δ deficiency, and 1 unclassified and 8 T-positive SCID (5 with zeta chain-associated protein kinase (ZAP70 deficiency and 3 with inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta (IKKβ deficiency. As a non-SCID patient group, 5 Primary Immunodeficiency Disease (PID patients were studied: 1 T-negative PID (cartilage-hair hypoplasia and 4 T-positive PID (2 common immune deficiency (CID, 1 Wiskott–Aldrich syndrome, and 1 X-linked lymphoproliferative disease. Both patient groups required hematopoietic stem cell transplantation. In addition, randomly-selected de-identified controls (n = 982 were tested. Results: all T-negative SCID and PID had zero TRECs. Low-TRECs were identified in 2 ZAP70 siblings, 1 CID patient as well as 5 preterm, 1 twin, and 4 de-identified controls. Conclusions: TREC method will identify T-negative SCID and T-negative PID. To identify other SCID babies, newborn screening in Manitoba must include supplemental targeted screening for ethnic-specific mutations.

  5. PolarTREC: Successful Methods and Tools for Attaining Broad Educational Impacts with Interdisciplinary Polar Science

    Science.gov (United States)

    Timm, K. M.; Warburton, J.; Owens, R.; Warnick, W. K.

    2008-12-01

    PolarTREC--Teachers and Researchers Exploring and Collaborating, a program of the Arctic Research Consortium of the U.S. (ARCUS), is a National Science Foundation (NSF)-funded International Polar Year (IPY) project in which K-12 educators participate in hands-on field experiences in the polar regions, working closely with IPY scientists as a pathway to improving science education. Developing long-term teacher- researcher collaborations through PolarTREC ensures up-to-date climate change science content will permeate the K-12 education system long after the IPY. By infusing education with the cutting edge science from the polar regions, PolarTREC has already shown an increase in student and public knowledge of and interest in the polar regions and global climate change. Preliminary evaluations have shown that PolarTREC's program activities have many positive impacts on educators and their ability to teach science concepts and improve their teaching methods. Additionally, K-12 students polled in interest surveys showed significant changes regarding the importance of understanding the polar regions as a person in today's world. Researchers have been overwhelmingly satisfied with PolarTREC and cited several specific strengths, including the program's crucial link between the teachers' field research experiences and their classroom and the extensive training provided to teachers prior to their expedition. This presentation will focus on other successful components of the PolarTREC program and how researchers and organizations might use these tools to reach out to the public for long-term impacts. Best practices include strategies for working with educators and the development of an internet-based platform for teachers and researchers to interact with the public, combining several communication tools such as online journals and forums, real-time Internet seminars, lesson plans, activities, audio, and other educational resources that address a broad range of scientific

  6. The genus Cecropia: a biological clock to estimate the age of recently disturbed areas in the Neotropics.

    Directory of Open Access Journals (Sweden)

    Paul-Camilo Zalamea

    Full Text Available Forest successional processes following disturbance take decades to play out, even in tropical forests. Nonetheless, records of vegetation change in this ecosystem are scarce, increasing the importance of the chronosequence approach to study forest recovery. However, this approach requires accurate dating of secondary forests, which until now was a difficult and/or expensive task. Cecropia is a widespread and abundant pioneer tree genus of the Neotropics. Here we propose and validate a rapid and straightforward method to estimate the age of secondary forest patches based on morphological observations of Cecropia trees. We found that Cecropia-inferred ages were highly correlated with known ages of the forest. We also demonstrate that Cecropia can be used to accurately date disturbances and propose twenty-one species distributed all over the geographical range of the genus as potential secondary forest chronometer species. Our method is limited in applicability by the maximal longevity of Cecropia individuals. Although the oldest chronosequence used in this study was 20 years old, we argue that at least for the first four decades after disturbance, the method described in this study provides very accurate estimations of secondary forest ages. The age of pioneer trees provides not only information needed to calculate the recovery of carbon stocks that would help to improve forest management, but also provides information needed to characterize the initial floristic composition and the rates of species remigration into secondary forest. Our contribution shows how successional studies can be reliably and inexpensively extended without the need to obtain forest ages based on expensive or potentially inaccurate data across the Neotropics.

  7. PolarTREC-Celebrating the Legacy of the IPY Through Researcher-Educator Partnerships

    Science.gov (United States)

    Timm, K.; Warburton, J.; Larson, A. M.

    2009-12-01

    Polar TREC-Teachers and Researchers Exploring and Collaborating, a three-year (2007-2009) NSF-funded program, has matched over 40 teachers with polar researchers working in multiple scientific disciplines for 2-8 week Teacher Research Experiences (TRE) in the Arctic and Antarctica during the IPY. PolarTREC contributes to the legacy of the IPY through the creation and dissemination of polar education resources, prolonged teacher-researcher relationships, and contributions to scholarly knowledge on the impacts of TRE's. Products developed during PolarTREC are helping to sustain the widespread interest and enthusiasm in the polar regions generated during the IPY. During their expeditions, participating teachers brought science and information about profound changes at the poles to school, community, and professional audiences through web-based communications, journals, discussion forums, multimedia, and live events. PolarTREC teachers constructed nearly 100 classroom lesson plans and activities as products of their experiences. Live events from the field attracted over 11,000 participants, primarily K-12 students. Although the field experience is central to the PolarTREC TRE Model, many participants cite the relationship they built with their teacher/researcher as one of the best outcomes. Through personal communications, presentations at professional conferences, and continued support of each other’s work through classroom visits or joint proposal development, teachers and researchers have maintained the mutually beneficial relationships established during the IPY. Participating scientists gained access to professional educators with expertise in translating research approaches and results into programs. The need for researchers to explain their research and “boil it down to the raw essence” helped many see how their work fits into a bigger picture, often helping them communicate outside their scientific discipline and to diverse public audiences. Teachers, on

  8. PolarTREC-Teachers and Researchers Exploring and Collaborating: Innovative Science Education from the Poles to the World

    Science.gov (United States)

    Warnick, W. K.; Warburton, J.; Breen, K.; Wiggins, H. V.; Larson, A.; Behr, S.

    2006-12-01

    PolarTREC-Teachers and Researchers Exploring and Collaborating is a three-year (2007-2009) teacher professional development program celebrating the International Polar Year (IPY) that will advance polar science education by bringing K-12 educators and polar researchers together in hands-on field experiences in the Arctic and Antarctic. PolarTREC builds on the strengths of the existing TREC program in the Arctic, an NSF supported program managed by the Arctic Research Consortium of the US (ARCUS), to embrace a wide range of activities occurring at both poles during and after IPY. PolarTREC will foster the integration of research and education to produce a legacy of long-term teacher-researcher collaborations, improved teacher content knowledge through experiences in scientific inquiry, and broad public interest and engagement in polar science and IPY. PolarTREC will enable thirty-six teachers to spend two to six weeks in the Arctic or Antarctic, working closely with researchers investigating a wide range of IPY science themed topics such as sea-ice dynamics, terrestrial ecology, marine biology, atmospheric chemistry, and long-term climate change. While in the field, teachers and researchers will communicate extensively with their colleagues, communities, and hundreds of students of all ages across the globe, using a variety of tools including satellite phones, online journals, podcasts and interactive "Live from IPY" calls and web-based seminars. The online outreach elements of the project convey these experiences to a broad audience far beyond the classrooms of the PolarTREC teachers. In addition to field research experiences, PolarTREC will support teacher professional development and a sustained community of teachers, scientists, and the public through workshops, Internet seminars, an e-mail listserve, and teacher peer groups. For further information on PolarTREC, contact Wendy Warnick, ARCUS Executive Director at warnick@arcus.org or 907-474-1600 or visit www.arcus.org/trec/

  9. Numerical analysis of pulsed local plane-wave generation in a TREC

    OpenAIRE

    Meton, Philippe; Cozza, Andrea; Monsef, Florian; Lambert, Marc; Joly, Jean-Christophe; Bruguière, Pierre

    2012-01-01

    International audience The feasibility of generating arbitrary wavefronts within a time-reversal electromagnetic chamber (TREC) has been demonstrated both theoretically and experimentally. Though originally motivated for EMC tests, the generation of coherent wavefronts within a reverberating cavity has a potential interest in antenna testing, too. In this paper, the generation of locally planar wavefronts is addressed by means of numerical simulations involving a 2D cavity, for a scalar el...

  10. NASA IceBridge and PolarTREC - Education and Outreach Partnership

    Science.gov (United States)

    Bartholow, S.; Warburton, J.; Beck, J.; Woods, J. E.

    2015-12-01

    PolarTREC-Teachers and Researchers Exploring and Collaborating, a teacher professional development program, began with the International Polar Year in 2004 and continues today in the United States. PolarTREC has worked specifically with OIB for 3 years and looking forward to ongoing collaboration. PolarTREC brings U.S. K­12 educators and polar researchers together through an innovative teacher research experience model. Participating teachers spend 3-6 weeks in the field with research teams conducting surveys and collecting data on various aspects of polar science. During their experience, teachers become research team members filling a variety of roles on the team. They also fulfill a unique role of public outreach officer, conducting live presentations about their field site and research as well as journaling, answering questions, and posting photos. Working with OIB has opened up the nature of science for the participating teachers. In developing the long-term relationship with OIB teams, teachers can now share (1) the diversity of training, backgrounds, and interests of OIB scientists, (2) identify the linkages between Greenlandic culture and community and cryospheric science and evidence of climate change, (3) network with Danish and Greenlandic educators on the mission (4) gain access to the full spectrum of a science project - development, implementation, analysis, networking, and dissemination of information. All aspects help these teachers become champions of NASA science and educational leaders in their communities. Evaluation data shows that PolarTREC has clearly achieved it goals with the OIB partnership and suggests that linking teachers and researchers can have the potential to transform the nature of science education. By giving teachers the content knowledge, pedagogical tools, confidence, understanding of science in the broader society, and experiences with scientific inquiry, participating teachers are using authentic scientific research in their

  11. CWI and TU Delft at TREC 2013: Contextual Suggestion, Federated Web Search, KBA, and Web Tracks

    OpenAIRE

    Bellogín Kouki, Alejandro; Gebremeskel, Gebre; He, Jiyin; Lin, Jimmy; Said, Alan; Samar, Thaer; De, Vries; Vuurens, Jeroen

    2014-01-01

    This paper provides an overview of the work done at the Centrum Wiskunde & Informatica (CWI) and Delft University of Technology (TU Delft) for different tracks of TREC 2013. We participated in the Contextual Suggestion Track, the Federated Web Search Track, the Knowledge Base Acceleration (KBA) Track, and the Web Ad-hoc Track. In the Contextual Suggestion track, we focused on filtering the entire ClueWeb12 collection to generate recommendations according to the provided user profiles and cont...

  12. In vivo potential hypoglycemic and in vitro vasorelaxant effects of Cecropia glazioviistandardized extracts

    Directory of Open Access Journals (Sweden)

    Daniela Paula Arend

    2015-10-01

    Full Text Available ABSTRACTThe aim of this study is to investigate the effect of Cecropia glaziovii Snethl, Urticaceae, extracts on the oral glucose tolerance curve, on glycemia in alloxan-induced diabetic rats and vasorelaxant effect after the extraction process, and to standardize the extractive solutions. The effects of the process variables and their interactions were calculated in relation to dry residue, pH, total phenolic results and chemical marker content. Furthermore, the effect of the extracts (400 mg/kg, chlorogenic (2 or 15 mg/kg and caffeic acids (2 mg/kg were investigated on the oral glucose tolerance curve and on glycemia in alloxan-induced diabetic rats. Oral administration of ethanol extracts 4d20 and 8d20 significantly improved glucose tolerance in the hyperglycemic rats. Chlorogenic and caffeic acids, as well as the association of the compounds were able to significantly reduce glycemia after oral gavage treatments. On the other hand, the aqueous extracts did not alter the glycemia. The aqueous extracts (8020 and 9030 and only the higher dose of chlorogenic acid presented a significant effect on serum glucose lowering in diabetic rats. Additionally, the IC50 reveals that the ethanol extracts presented more potent vasodilator effects than the aqueous extracts in aortic rings. This study shows that C. glazioviistandardized extracts exhibits antihyperglycemic action, is able to improve glucose tolerance and has a potent vascular relaxing effect. These results are probably linked to concentrations of the main phenolic compounds of the extracts.

  13. Experimental design as a tool to evaluate chlorogenic and caffeic acids extracted from Cecropia glaziovii Sneth.

    Science.gov (United States)

    Arend, Daniela P; dos Santos, Talitha Caldas; Sonaglio, Diva; Dos Santos, Ana Lúcia Gomes; Reginatto, Flávio H; de Campos, Angela M

    2011-01-01

    The effects of different parameters, including ethanol concentration, time of drug:solvent contact, temperature and the presence of a preservative, on chlorogenic acid (CGA) and caffeic acid (CFA) yields in Cecropia glaziovii Sneth extracts were investigated using an experimental design. In order to quantify the phenolic acids in these extracts a high-performance liquid chromatography-diode array detection (HPLC-DAD) method was developed and validated. Extracts with 80% ethanol presented a higher CGA content, but low amounts of CFA. Extracts with 20% ethanol showed a higher CFA concentration, but a sharp reduction in CGA extraction yield. The presence of a preservative, under the same extraction conditions, resulted in a slight difference or no difference in the CGA and CFA extraction yields. When the temperature was controlled at refrigerator or room temperature, a slight alteration in the concentrations of the phenolics studied was observed. The present approach can be applied in order to determine the optimum conditions for the preparation of C. glaziovii Sneth extracts based on CGA or CFA extraction yield as a chemical marker. PMID:20837386

  14. Two Steps Feature Selection and Neural Network Classification for the TREC-8 Routing

    OpenAIRE

    Stricker, Mathieu; Vichot, Frantz; Dreyfus, Gerard; Wolinski, Francis

    2000-01-01

    For the TREC-8 routing, one specific filter is built for each topic. Each filter is a classifier trained to recognize the documents that are relevant to the topic. When presented with a document, each classifier estimates the probability for the document to be relevant to the topic for which it has been trained. Since the procedure for building a filter is topic-independent, the system is fully automatic. By making use of a sample of documents that have previously been evaluated as relevant o...

  15. Improving Geoscience Education through the PolarTREC Teacher Research Experience Model (Invited)

    Science.gov (United States)

    Warburton, J.; Timm, K.; Larson, A. M.

    2010-12-01

    Teacher Research Experiences (TRE’s) are not new. For more than a decade, the National Science Foundation (NSF) as well as other federal agencies have been funding programs that place teachers with researchers in efforts to invigorate science education by bringing educators and researchers together through hands-on experiences. Many of the TRE’s are successful in providing a hands-on field experience for the teachers and researchers however many of the programs lack the resources to continue the collaborations and support the growing network of teachers that have had these field experiences. In 2007, NSF provided funding for PolarTREC—Teachers and Researchers Exploring and Collaborating, a program of the Arctic Research Consortium of the U.S. (ARCUS). PolarTREC is a TRE where K-12 teachers participate in polar field research, working closely with scientists as a pathway to improving science education. In just three years, it has become a successful TRE. What makes PolarTREC different than other the teacher research experience programs and how can others benefit from what we have learned? During this presentation, we will share data collected through the program evaluation and on how PolarTREC contributes to the discipline of Science, Technology, Engineering, and Mathematics (STEM) education and pedagogy through a model program conceived and organized according to current best practices, such as pre-research training, mentoring, support for classroom transfer, and long-term access to resources and support. Data shows that PolarTREC’s comprehensive program activities have many positive impacts on educators and their ability to teach science concepts and improve their teaching methods. Additionally, K-12 students polled in interest surveys showed significant changes in key areas including amount of time spent in school exploring research activities, importance of understanding science for future work, importance of understanding the polar regions as a person

  16. PolarTREC-Teachers and Researchers Exploring and Collaborating: Science Education from the Poles to the World

    Science.gov (United States)

    Warnick, W. K.; Breen, K.; Warburton, J.; Fischer, K.; Wiggins, H.; Owens, R.; Polly, B.; Wade, B.; Buxbaum, T.

    2007-12-01

    PolarTREC-Teachers and Researchers Exploring and Collaborating is a three-year (2007-2009) teacher professional development program celebrating the International Polar Year (IPY) that advances polar science education by bringing K-12 educators and polar researchers together in hands-on field experiences in the Arctic and Antarctic. Currently in its second year, the program fosters the integration of research and education to produce a legacy of long-term teacher-researcher collaborations, improved teacher content knowledge through experiences in scientific inquiry, and broad public interest and engagement in polar science. Through PolarTREC, over 40 U.S. teachers will spend two to six weeks in the Arctic or Antarctic, working closely with researchers in the field as an integral part of the science team. Research projects focus on a wide range of IPY science themed topics such as sea-ice dynamics, terrestrial ecology, marine biology, atmospheric chemistry, and long-term climate change. While in the field, teachers and researchers will communicate extensively with their colleagues, communities, and hundreds of students of all ages across the globe, using a variety of tools including satellite phones, online journals, podcasts and interactive "Live from IPY" calls and web-based seminars. The online outreach elements of the project convey these experiences to a broad audience far beyond the classrooms of the PolarTREC teachers. In addition to field research experiences, PolarTREC will support teacher professional development and a sustained community of teachers, scientists, and the public through workshops, Internet seminars, an e-mail listserve, and teacher peer groups. To learn more about PolarTREC visit the website at: http://www.polartrec.com or contact info@polartrec.com or 907-474-1600. PolarTREC is funded by NSF and managed by the Arctic Research Consortium of the US (ARCUS).

  17. PolarTREC-Teachers and Researchers Exploring and Collaborating: Science Education from the Poles to the World

    Science.gov (United States)

    Timm, K. M.; Warburton, J.; Owens, R.; Warnick, W. K.

    2008-12-01

    PolarTREC--Teachers and Researchers Exploring and Collaborating, a program of the Arctic Research Consortium of the U.S. (ARCUS), is a National Science Foundation (NSF)--funded International Polar Year (IPY) project in which K-12 educators participate in hands-on field experiences, working closely with IPY scientists as a pathway to improving science education. PolarTREC has developed a successful internet-based platform for teachers and researchers to interact and share their diverse experiences and expertise by creating interdisciplinary educational tools including online journals and forums, real-time Internet seminars, lesson plans, activities, audio, and other educational resources that address a broad range of scientific topics. These highly relevant, adaptable, and accessible resources are available to educators across the globe and have connected thousands of students and citizens to the excitement of polar science. By fostering the integration of research and education and infusing education with the thrill of discovery, PolarTREC will produce a legacy of long-term teacher-researcher collaborations and increased student knowledge of and interest in the polar regions well beyond the IPY time period. Educator and student feedback from preliminary evaluations has shown that PolarTREC's comprehensive program activities have many positive impacts on educators and their ability to teach science concepts and improve their teaching methods. Additionally, K-12 students polled in interest surveys showed significant changes in key areas including amount of time spent in school exploring research activities, importance of understanding science for future work, importance of understanding the polar regions as a person in today's world, as well as increased self-reported knowledge and interest in Science, Technology, Engineering, and Mathematics content areas. PolarTREC provides a tested approach and a clear route for researcher participation in the education community

  18. A new look at discontinuous respiration in pupae of Hyalophora cecropia (Lepidoptera: Saturniidae): Haemocoelic pressure, extracardiac pulsations and O2 consumption

    Czech Academy of Sciences Publication Activity Database

    Sláma, Karel

    2010-01-01

    Roč. 107, č. 4 (2010), s. 487-507. ISSN 1210-5759 Institutional research plan: CEZ:AV0Z50070508 Keywords : Saturniidae * Hyalophora cecropia * respiratory acidaemia Subject RIV: ED - Physiology Impact factor: 0.945, year: 2010 http://www.eje.cz/scripts/viewabstract.php?abstract=1559

  19. Identification of mariner-like elements belonging to the cecropia subfamily in two closely related Helicoverpa species

    Institute of Scientific and Technical Information of China (English)

    Jianjun Wang; Thomas A. Miller; Yoonseong Park

    2011-01-01

    Mariner transposons are widespread in eukaryote genomes and have been used as transposon vectors in insect transgenesis.We examined two closely related Helicoverpa species,the cotton bollworm Helicoverpa armigera and corn earworm Helicoverpa zea,for the presence of mariner-like elements (MLEs).Multiple copies of two distinct MLEs,Hamarl and Hamar2,were isolated in H.armigera,and a MLE showing a high degree of conservation to Hamarl was detected in H.zea and was named Hzmarl.These MLEs belong to the cecropia subfamily,containing indels in the transposase coding region.Sequence analysis indicated the earlier invasion of Hamarl and relatively recent activity of Hamar2.

  20. Inhibition of gastric acid secretion by a standardized aqueous extract of Cecropia glaziovii Sneth and underlying mechanism.

    Science.gov (United States)

    Souccar, C; Cysneiros, R M; Tanae, M M; Torres, L M B; Lima-Landman, M T R; Lapa, A J

    2008-06-01

    Cecropia glazioui Sneth (Cecropiaceae) is used in folk medicine in tropical and subtropical Latin America as cardiotonic, diuretic, hypotensive, anti-inflammatory and anti-asthmatic. The hypotensive/antihypertensive activity of the plant aqueous extract (AE) and isolated butanolic fraction (BuF) has been confirmed and putatively related to calcium channels blockade in vascular smooth musculature [Lapa, A.J., Lima-Landman, M.T.R., Cysneiros, R.M, Borges, A.C.R., Souccar, C., Barreta, I.P., Lima, T.C.M., 1999. The Brazilian folk medicine program to validate medicinal plants - a topic in new antihypertensive drug research. In: Hostettman, K., Gupta, M.P., Marston, A. (Eds.), Proceedings Volume, IOCD/CYTED Symposium, Panamá City, Panamá, 23-26 February 1997. Chemistry, Biological and Pharmacological Properties of Medicinal Plants from the Americas. Harwood Academic Publishers, Amsterdam, pp. 185-196; Lima-Landman, M.T., Borges, A.C., Cysneiros, R.M., De Lima, T.C., Souccar, C., Lapa, A.J., 2007. Antihypertensive effect of a standardized aqueous extract of Cecropia glaziovii Sneth in rats: an in vivo approach to the hypotensive mechanism. Phytomedicine 14, 314-320]. Bronchodilation and antidepressant-like activities of both AE and BuF have been also shown [Delarcina, S., Lima-Landman, M.T., Souccar, C., Cysneiros, R.M., Tanae, M.M., Lapa, A.J., 2007. Inhibition of histamine-induced bronchospasm in guinea pigs treated with Cecropia glaziovi Sneth and correlation with the in vitro activity in tracheal muscles. Phytomedicine 14, 328-332; Rocha, F.F., Lima-Landman, M.T., Souccar, C., Tanae, M.M., De Lima, T.C., Lapa, A.J., 2007. Antidepressant-like effect of Cecropia glazioui Sneth and its constituents -in vivo and in vitro characterization of the underlying mechanism. Phytomedicine 14, 396-402]. This study reports the antiulcer and antisecretory gastric acid activities of the plant AE, its BuF and isolated compounds with the possible mechanism involved. Both AE and Bu

  1. Abnormal TREC-Based Newborn Screening Test in a Premature Neonate with Massive Perivillous Fibrin Deposition of the Placenta

    Science.gov (United States)

    Kostadinov, Stefan; Robbins, Karen A.; Hayward, Anthony

    2016-01-01

    Severe combined immunodeficiency (SCID), a primary immunodeficiency arising from variable defects in lymphocyte development and survival, is characterized by significant deficiency of thymus derived (T-) lymphocytes and variable defects in the B-lymphocyte population. Newborn screening for SCID is based on detection of low numbers of T-cell receptor excision circles (TRECs) by real time quantitative PCR (RT-qPCR). This screening allows for early identification of individuals with SCID and other disorders characterized by T-lymphopenia. Higher rates of abnormal screens are commonly seen in premature and critically ill neonates, often representing false positives. It is possible that many abnormal screens seen in these populations are result of conditions that are characterized by systemic inflammation or stress, possibly in the context of stress-induced thymic involution. We present a case of a male infant delivered at 27 weeks, 6 days of gestation, with severe intrauterine growth restriction who had an abnormal TREC screen and a massive perivillous fibrin deposition (MPFD) of the placenta. This association has not been reported previously. We are raising the awareness to the fact that conditions, such as MPFD, that can create adverse intrauterine environment are capable of causing severe stress-induced thymic involution of the fetus which can present with abnormal TREC results on newborn screening.

  2. Interação planta-inseto: Aspectos biológicos e ecológicos do mutualismo Cecropia-Azteca

    Directory of Open Access Journals (Sweden)

    2015-08-01

    Abstract. A well-known association is the mutualism between plants is between plant species of the genus Cecropia and ants, mostly belonging to the genus Azteca. In this association, the ants nest in domatia present in the hollow trunk of this myrmecophytes and feed on food bodies provided by the plant, known as mullerian bodies. In return, the ants protect the host plant against herbivore attacks and invasion by vines, and nourish it through waste laid in the trunk. However, the effectiveness of this association may vary with several factors, such as the associated ant species and the habitat type of the myrmecophyte. About 10% of Cecropia species lost their attractive characteristics, such as species living in high altitude and inhabit islands. Aspects like associated ant richness and molecular studies show that the colonization of these plants by ants occurred several times and independently by different genera. The selection pressure exerted by some species of ants may have been one of the decisive factors for the development of attractive traits for ants in Cecropia. With the evolution of these features ants might become an effective partner of the plant, facilitating the co-evolution of specific interactions.

  3. MALDI-TOF MS Analysis of Proanthocyanidins in Two Lowland Tropical Forest Species of Cecropia: A First Look at Their Chemical Structures

    Directory of Open Access Journals (Sweden)

    Alex Van Huynh

    2014-09-01

    Full Text Available The structural chemistry of proanthocyanidin molecules has been investigated in temperate zone plants, but few studies have been done with plants of the Amazonian lowland tropical wet forests where herbivore pressure is more extensive and diverse. Using MALDI-TOF mass spectrometry, we report unique properties of the proanthocyanidin structural chemistry in two neotropical Cecropia species, C. polystachya, a myrmecophyte with mutualistic ants, and C. sciadophylla, a non-myrmecophyte lacking mutualistic ants. Our preliminary data suggests the presence of reportedly uncommon propelargonidin subunits in a majority of proanthocyanidin oligomers. The presence of 3-O-gallate proanthocyanidin monomers was also detected in the mass spectra of both species. Unlike other studies that have examined species growing at higher latitudes, oligomers composed of procyanidin, propelargonidin, and their 3-O-gallates were present in both Cecropia species while the presence of oligomers containing prodelphinidin units were absent or at lower levels. These distinctive features may suggest that proanthocyanidins in some tropical plant species may be an untapped source of proanthocyanidin structural complexity that warrants further investigation. Several differences between spectra of the two Cecropia species could also point to the presence of anti-herbivore defense tradeoffs between chemical defense quality and biotic defense between the two species.

  4. TREC 2010 legal track: method and results of the ELK collaboration

    Energy Technology Data Exchange (ETDEWEB)

    Spearing, Shelly [Los Alamos National Laboratory; Roman, Jorge [Los Alamos National Laboratory; Mc Kay, Bain [KAYVIUM; Lindquist, Eric [EWA-IIT

    2010-10-25

    The ELK team ([E]WA-IIT, [L]os Alamos National laboratory (LANL), and [K]ayvium Corporation (ELK)) used the legal Track task 302 as an opportunity to compare and integrate advanced semantic-automation strategies. The team members believe that enabling parties to discover, consume, analyze, and make decisions in a noisy and information-overloaded environment requires new tools. Together, as well as independently, they are actively developing these tools and view the TREC exercise as an opportunity to test, compare, and complement tools and approaches. Our collaboration is new to TREC, brought together by a shared interest in document relevance, concept-in-context identification and annotation, and the recognition that words out-of-context do not a match make. The team's intent was to lay the foundation for automating the mining and analysis of large volumes of electronic information by litigants and their lawyers, not only in the context of document discovery, but also to support litigation strategy, motion practice, deposition, trial tactics, etc. The premise was that a Subject Matter Expert- (SME-) built model can be automatically mapped onto various search engines for document retrieval, organization, relevance scoring, analysis and decision support. In the end, we ran nearly a dozen models, mostly, but not exclusively, with Kayvium Corporation's knowledge automation technology. The Sal Database Search Engine we used had a bug in its proximity feature, requiring that we develop a workaround. While the work-around was successful, it left us with insufficient time to converge the models to achieve expected quality. However, with optimized proximity processing in place, we would be able to run the model many more times, and believe repeatable quality would be a matter of working through a few requests to get the approach right. We believe that with more time, the results we would achieve might point towards a new way of processing documents for litigation

  5. New tip functionalization strategies for molecular recognition force spectroscopy and TREC

    International Nuclear Information System (INIS)

    This study was part of the work program in the 'Christian Doppler Laboratory for nanoscopic methods in Biophysics' which started in 2008. State of the art methods in tip functionalization of AFM tips are able to introduce 1 3 functional PEG linkers (and sensor molecules) on the tip apex by various methods. While this number of sensor molecules per tip is most appropriate for force spectroscopy, a ten times higher number of sensor molecules per tip would be desired when using TREC (simultaneous topography and recognition imaging) in a wide range of applications, especially on cells. Considering the multi step procedures for tip functionalization, any of the steps might appear as target for further improvement. From a closer look on our previously published studies [Riener 2003; Kamruzzahahn 2006; Ebner 2007; PhD thesis Wildling 2008], however, it is obvious that the first step (i.e., aminofunctionalization) is the most appropriate target for optimization, for two reasons: (i) All other steps appear to happen with rather high yield anyway under typical working conditions [Ebner 2007], leaving little room for further improvement. (ii) Higher efficiency in the first step (i.e., higher amine group density on the tip apex) which is common to 'all families' of tip functionalization procedures is a simple way to optimize all kinds of tip functionalization procedures at the same time. Optimization of the 'aminofunctionalization' also required a new, fast and unbiased analytical method for estimation of the amine group density on the surface. Therefore, a new fluorescence based assay had to be developed, with a very low detection limit of ∼100 sites/μm2. In this study, the development of the fluorescence assay is described in the first place, its excellent performance being demonstrated with commercial or conventionally prepared test samples of well known amine group density. The second part concerns the successful development of silicon nitride functionalization with

  6. Clinical trial of Cecropia obtusifolia and Marrubium vulgare leaf extracts on blood glucose and serum lipids in type 2 diabetics.

    Science.gov (United States)

    Herrera-Arellano, A; Aguilar-Santamaría, L; García-Hernández, B; Nicasio-Torres, P; Tortoriello, J

    2004-11-01

    Cecropia obtusifolia and Marrubium vulgare have been widely used in Mexican traditional medicine for the control of type 2 diabetes. In order to evaluate the clinical effect produced by the aqueous extract from these species on type 2 non-controlled diabetes mellitus, a total of 43 outpatients were included. Based on the European NIDDM (policy group) criteria, only patients with poor response to the conventional treatment were selected. All patients maintained their medical treatment and also received a prepared infusion of the dry leaves of the plant treatment for 21 days. In a double-blind manner, the patients were randomly grouped as follows: 22 patients were treated with C. obtusifolia and 21 with M. vulgare. The fasting blood glucose values were reduced by 15.25% on patients treated with C. obtusifolia, while cholesterol and triglycerides were decreased by 14.62% and 42.0%, respectively (ANOVA pvulgare, the plasma glucose level was reduced by 0.64% and cholesterol and triglycerides by 4.16% and 5.78%, respectively. When the results were compared between groups, significant differences in glucose and cholesterol diminution were found. The obtained results showed that the infusion prepared with the leaves of C. obtusifolia (containing 2.99+/-0.14mg of chlorogenic acid/g of dried plant) produced beneficial effects on carbohydrate and lipid metabolisms when it was administered as an adjunct on patients with type 2 diabetes with poor response to conventional medical treatment. PMID:15636168

  7. Teachers, Researchers, and Students Collaborating in Arctic Climate Change Research: The Partnership Between the Svalbard REU and ARCUS PolarTREC programs

    Science.gov (United States)

    Roof, S.; Warburton, J.; Oddo, B.; Kane, M.

    2007-12-01

    Since 2004, the Arctic Research Consortium of the U.S. (ARCUS) "TREC" program (Teachers and Researchers Exploring and Collaborating, now "PolarTREC") has sent four K-12 teachers to Svalbard, Norway to work alongside researchers and undergraduate students conducting climate change research as part of the Svalbard Research Experiences for Undergraduates (REU) Program. The benefits of this scientist/educator/student partnership are many. Researchers benefit from teacher participation as it increases their understanding of student learning and the roles and responsibilities of K-12 teachers. The TREC teacher contributes to the research by making observations, analyzing data, and carrying heavy loads of equipment. In collaborating with K- 12 teachers, undergraduate student participants discover the importance of teamwork in science and the need for effective communication of scientific results to a broad audience. The questions that K-12 teachers ask require the scientists and students in our program to explain their work in terms that non-specialists can understand and appreciate. The K-12 teacher provides a positive career role model and several Svalbard REU undergraduate students have pursued K-12 teaching careers after graduating. TREC teachers benefit from working alongside the researchers and by experiencing the adventures of real scientific research in a remote arctic environment. They return to their schools with a heightened status that allows them to share the excitement and importance of scientific research with their students. Together, all parties contribute to greatly enhance public outreach. With ARCUS logistical support, TREC teachers and researchers do live web conferences from the field, reaching hundreds of students and dozens of school administrators and even local politicians. Teachers maintain web journals, describing the daily activities and progress of the researcher team. Online readers from around the world write in to ask questions, which the

  8. Deficient T Cell Receptor Excision Circles (TRECs) in autosomal recessive hyper IgE syndrome caused by DOCK8 mutation: implications for pathogenesis and potential detection by newborn screening.

    Science.gov (United States)

    Dasouki, Majed; Okonkwo, Kingsley C; Ray, Abhishek; Folmsbeel, Caspian K; Gozales, Diana; Keles, Sevgi; Puck, Jennifer M; Chatila, Talal

    2011-11-01

    Loss of function of DOCK8 is the major cause of autosomal recessive hyper IgE syndrome, a primary immunodeficiency with adaptive and innate immune dysfunction. Patients affected with ARHIES have atopic dermatitis and recurrent, potentially life-threatening viral and bacterial infections. Three consanguineous Pakistani siblings presented with severe atopic dermatitis and superinfection. Direct sequencing of DOCK8 in all three affected siblings demonstrated homozygosity for a deleterious, novel exon 14 frame shift mutation. Current newborn screening for severe combined immunodeficiency syndrome (SCID) and related T cell disorders relies on the quantitation of T Cell Receptor Excision Cells (TRECs) in dried blood spots (DBS). Significantly, both older affected siblings had undetectable TRECs, and TREC copy number was reduced in the youngest sibling. These findings suggest that AR-HIES may be detected by TREC newborn screening, and this diagnosis should be considered in the evaluation of newborns with abnormal TRECs who do not have typical SCID. PMID:21763205

  9. Evaluation of potentical use of the wood of Schizolobium amazonicum “Paricá” and Cecropia hololeuca “Embaúba” for wood cement board manufacture

    Directory of Open Access Journals (Sweden)

    Vinicius Yurk da Rocha

    2012-06-01

    Full Text Available This research was developed to evaluate the potential use of Schizolobium amazonicum “Paricá” and Cecropia hololeuca “Embaúba” wood for wood cement board manufacture. Panels with the density of 1.200 kg/m³ were made, using cement CP V ARI as mineral bonding and wood particles without treatment and treated with immersion in cold water, hot water and sodium hydroxide. The panels were pressed at the pressure of 40 kgf/cm², room temperature and press / clipping time of 24 hours and maturation time of 28 days. The evaluation of the properties of water absorption, thickness swelling, internal bond, modulus of elasticity and modulus of rupture, showed that Schizolobium amazonicum “Paricá” and Cecropia hololeuca “Embaúba” wood are technically feasible for wood-cement board manufacture. It was also found that the panels of embaúba exhibit some properties superior to those of the paricá, and the particles do not necessarily need treatment.

  10. El enojo en madres y padres de hijas adolescentes: propuesta de orientación desde la TREC y la inteligencia emocional / The anger in parents of teenage daughters: propose of guidance since the TREC and emotional intelligence

    Directory of Open Access Journals (Sweden)

    Murillo Aguilar, Osvaldo

    2008-08-01

    Full Text Available Resumen: Este artículo, basado en la tesis de grado denominada “Expresión del Enojo en Madres y Padres de Hijas Adolescentes: Propuesta de Orientación desde el Enfoque de la TREC”, realizada por Jessie Arroyo Zúñiga y Osvaldo Murillo Aguilar, para optar por el grado de licenciatura en Orientación en el año 2008, ofrece desde esta disciplina, una integración entre la teoría de la Inteligencia Emocional y el enfoque de la Terapia Racional Emotivo – Conductual (TREC, para comprender y abordar la expresión del enojo en estas madres y padres de hijas adolescentes. Por ello, como recomendación, se presenta una propuesta de Orientación que pretende fortalecer los vínculos de las madres y padres con sus hijas adolescentes, por medio de un proceso que propicie formas de expresión emocionalmente saludables del enojo, basado en la integración de la teoría de la inteligencia emocional y el enfoque de la TREC. Para la elaboración del presente trabajo se establecieron los siguientes objetivos: 1. Analizar las formas en las que expresan el enojo las madres y los padres de familia del Liceo María Auxiliadora.2. Elaborar estrategias de Orientación dirigidas a madres y padres de hijas adolescentes que promuevan una expresión saludable del enojo. La metodología se estableció bajo la perspectiva cualitativa, que permitió la comprensión de las experiencias de las madres y los padres, sus emociones, pensamientos y conductas. La principal técnica de recolección de información fueron los grupos focales, y se analizó a partir de la organización y codificación de datos, por medio de categorías de análisis.Abstract: This article, based on the thesis entitled "Expression of Anger in Mothers and Fathers of Daughters Teens: proposed of Guidance since the TREC" performed by Jessie Arroyo Zúñiga and Osvaldo Murillo Aguilar, to graduate in Guidance in the 2008; offers from this discipline, an integration between the theory of Emotional

  11. Avaliação do potencial de utilização da madeira de Schizolobium amazonicum "Paricá" e Cecropia hololeuca "Embaúba" para produção de painéis aglomerados Evaluation of potential use of the wood of Schizolobium amazonicum "Paricá" and Cecropia hololeuca "Embaúba" to particleboard manufacture

    Directory of Open Access Journals (Sweden)

    Setsuo Iwakiri

    2010-01-01

    Full Text Available Esta pesquisa teve por objetivo avaliar o potencial de utilização de madeira de Schizolobium amazonicum (Paricá e Cecropia hololeuca (Embaúba para produção de painéis aglomerados. Foram produzidos painéis experimentais com densidade nominal de 0,70 g/cm³, utilizando a resina uréia-formaldeído e partículas de madeira de Paricá e Embaúba, e mistura destas, em proporções de 75, 50 e 25%. A madeira de Pinus taeda foi utilizada como testemunha. Os painéis foram prensados com pressão específica de 40 kgf/cm², temperatura de 160ºC e tempo de prensagem de 8 minutos. Os resultados das avaliações de propriedades de absorção de água, inchamento em espessura, ligação interna, módulo de elasticidade e módulo de ruptura, indicaram que as madeiras de Schizolobium amazonicum (Paricá e Cecropia hololeuca (Embaúba são tecnicamente viáveis para produção de painéis aglomerados.This research was developed to evaluate the potential use of the woods Schizolobium amazonicum (Paricá and Cecropia hololeuca (Embaúba for manufacturing particleboard. Were made panels with the densities of 0.70 g/cm³, using mixtures of urea-formaldehyde resin and wood particles of Paricá and Embaúba, in proportions of 75, 50 and 25%. The Pinus taeda wood was used as the reference. The panels were pressed at the temperature of 160ºC, pressure of 40 kgf/cm², for 8 minutes. The evaluations of the properties of water absorption, thickness swelling, internal bond, modulus of elasticity and modulus of ruptures, showed that the woods of Schizolobium amazonicum (Paricá e Cecropia hololeuca (Embaúba are technically feasible for particleboard manufacture.

  12. Potencial alelopático de espécies nativas na germinação e crescimento inicial de Lactuca sativa L. (Asteraceae Allelopathic potential of native species in Lactuca sativa L. (Asteraceae germination and initial growth

    Directory of Open Access Journals (Sweden)

    Fabiana Maraschin-Silva

    2006-03-01

    Full Text Available A alelopatia caracteriza-se pelos efeitos danosos ou benéficos sobre o desenvolvimento da vegetação, causados por substâncias químicas produzidas e liberadas para o ambiente por uma planta. Com o objetivo de avaliar o potencial alelopático de espécies brasileiras, foram testados extratos foliares de Cecropia pachystachya Trec. (Urticaceae, Peltophorum dubium (Spreng. Taub. (Fabaceae, Psychotria leiocarpa Cham. & Schltdl (Rubiaceae, Sapium glandulatum (Vell. Pax (Euphorbiaceae e Sorocea bonplandii (Baill. Burg., Lanj. & Boer (Moraceae, utilizando-se bioensaios de germinação e crescimento e alface (Lactuca sativa L. como planta alvo. Nesses bioensaios, foram usados extratos foliares aquosos nas concentrações de 2 e 4%, preparados por maceração estática com água fria e quente. Os extratos das cinco espécies causaram atraso na germinação dos aquênios da alface, bem como efeitos tóxicos no crescimento das plântulas, com redução e enfraquecimento das raízes. Os resultados obtidos mostraram a presença de substâncias químicas inibidoras nos extratos, revelando potencial alelopático para as cinco espécies avaliadas.Allelopathy is characterized by harmful or beneficial effects on vegetation development, caused by chemical substances produced and released into the environment by the plant. Aiming to assess the allelopathic potential of Brazilian species, aqueous leaf extracts of Cecropia pachystachya Trec. (Urticaceae, Peltophorum dubium (Spreng. Taub. (Fabaceae, Psychotria leiocarpa Cham. & Schltdl (Rubiaceae, Sapium glandulatum (Vell. Pax (Euphorbiaceae, and Sorocea bonplandii (Baill. Burger, Lanj. & Boer (Moraceae were tested on lettuce using germination and growth bioassays. In these bioassays, aqueous leaf extracts were used at concentrations of 2 and 4%, prepared by static maceration with cold and hot water. The five species extracts delayed lettuce germination and produced toxic effects on seedling growth, with root

  13. T-cell Receptor Excision Circles (TREC) in CD4+ and CD8+ T-cell Subpopulations in Atopic Dermatitis and Psoriasis Show Major Differences in the Emission of Recent Thymic Emigrants

    DEFF Research Database (Denmark)

    Just, Helle; Deleuran, Mette; Vestergaard, Christian; Deleuran, Bent; Thestrup-Pedersen, Kristian

    2008-01-01

    We used T-cell receptor excision circles (TREC) to evaluate thymic function in adult patients with atopic dermatitis and psoriasis. We observed that men, but not women, with atopic dermatitis had a significantly faster decline in TREC content with increasing age compared with healthy men. In cont...... indicates that atopic dermatitis patients can have compensatory emissions of thymic emigrants, whereas psoriatic patients do not, thus supporting different thymic function in these two diseases....

  14. Antioxidant activity of Paraguayan plant extracts.

    Science.gov (United States)

    Velázquez, E; Tournier, H A; Mordujovich de Buschiazzo, P; Saavedra, G; Schinella, G R

    2003-02-01

    The antioxidant properties of six medical herbs used in the traditional Paraguayan medicine were studied using free radical-generating systems. The methanol extracts from Aristolochia giberti, Cecropia pachystachya, Eugenia uniflora, Piper fulvescens, Schinus weinmannifolia and Schinus terebinthifolia protected against enzymatic and non-enzymatic lipid peroxidation in microsomal membranes of rat. C. pachystachya, E. uniflora, S. weinmannifolia and S. terebinthifolia showed the highest scavenging activity on the superoxide and DPPH radicals. PMID:12628400

  15. DEVELOPMENT OF REAL-TIME MULTIPLEX PCR FOR THE QUANTITATIVE DETERMINATION OF TREC'S AND KREC'S IN WHOLE BLOOD AND IN DRIED BLOOD SPOTS

    Directory of Open Access Journals (Sweden)

    M. A. Gordukova

    2015-01-01

    Full Text Available Primary immunodeficiencies (PID such as severe combined immunodeficiency (SCID and X-linked agammaglobulinemia are characterized by the lack of functional Tand B-cells, respectively. Without early diagnosis and prompt treatment children with PID suffer from severe infectious diseases, leading to their death or disability. Our purpose was developing of simple, inexpensive, high throughput technique based on the quantitative determination of TREC and KREC molecules by real-time PCR, and its validation in a group of children with a verified diagnosis of SCID and X-linked agammaglobulinemia.In this study, we developed and validated multiplex real-time PCR for the TREC’s and KREC’s quantitative analysis. We have shown that linear range of Ct changes depending on the concentrations of targets with a correlation coefficient R2 not worse than 0.98 was observed at concentrations from 109 to 5 × 104 copies per ml. The lowest amount of targets reliably detected in a reaction volume was 10 TREC’s copies, 5 KREC ‘s copies and 5 copies of internal control (IL17RA. We determined the age-depended reference values of TRECs and KRECs in whole blood in 29 boys and 27 girls with normal immunological parameters. The normal cut-offs for TRECs and KRECs were defined in dry blood spots depending on the method of extraction.The proposed method showed 100% diagnostic sensitivity and specificity in the studied group. The method can be proposed as a screening tool for the diagnosis of SCID and X-linked agammaglobulinemia both in whole blood and in the dry blood spots. The further investigation is required with larger number of samples. 

  16. Researcher and Educator Long Term Collaboration with NOAA ESRL Regarding Atmospheric Ozone Changes at the South Pole Through the NSF PolarTREC Program

    Science.gov (United States)

    Bergholz, E. H.; Hofmann, D. J.; Johnson, B. J.

    2009-12-01

    The NOAA/ESRL team at South Pole has been monitoring the development of the annual ozone hole over two decades using balloon-borne and ground based instruments. Collaboration with educators has become an important aspect of NOAA/ESRL to educate the public about ozone loss and ozone hole formation. Researcher Bryan Johnson and educator Elke Bergholz worked together at South Pole in 1998/1999 as part of the NSF teacher outreach program called Teachers Experiencing Antarctica (TEA).It has been almost a decade when they collaborated again concerning the ozone changes at South Pole as part of the International Polar Year (IPY) and the PolarTREC ( http://wwpolartrec.com ) teacher outreach program sponsored by NSF. The TEA and PolarTREC programs selected teachers to travel to polar locations to work with research scientists collecting data and running experiments at various Arctic and Antarctic field sites, including Elke Bergholz working at the South Pole with the NOAA/ESRL team. While in the field, daily contact with classrooms and students around the globe was done through the internet journals, answering emails from students, and webinars. This has been followed up with presentations to schools and the public relating Ms. Bergholz’s experience and new “hands-on” understanding of ozone instruments and ozone depletion over Antarctica, and discussing what changes in the ozone we have seen at South Pole since the first outreach program nearly a decade ago. The lesson plans are available through the PolarTREC website or by contacting Elke Bergholz at ebergholz@unis.org.

  17. A New IL-2RG Gene Mutation in an X-linked SCID Identified through TREC/KREC Screening: a Case Report

    Directory of Open Access Journals (Sweden)

    Maryam Nourizadeh

    2015-10-01

    Full Text Available Severe combined immunodeficiency (SCID represents a rare group of primary immunodeficiency disorders (PIDs, with known or unknown genetic alterations. Here, we report a new interleukin 2 receptor, gamma chain (IL-2RG mutation in an Iranian SCID newborn.The patient was a 6-day old boy with a family history of PID. The child was screened using a molecular-based analysis for the assessment of T cell receptor excision circles (TRECs and kappa-deleting recombination excision circles (KRECs. Moreover, a complete immunological evaluation and gene sequencing was performed.Results showed undetectable TREC but a high level of KREC copy numbers. Flowcytometric data indicated low numbers of T and NK cells, but elevated number of B cells. A novel substitution in IL2RG: c.675 C>A, leading to p.225 Ser>Arg was found. Based on the functional analysis, the mutation is predicted to be damaging. The patient was diagnosed as a T B+ NK X-linked SCID.

  18. Fósforo, nitrogênio, lignina, celulose e polifenóis em amostras de serrapilheira foliar de Neea macrophylla, Cecropia palmata e Casearia arborea no Nordeste do Estado do Pará.

    OpenAIRE

    Oliveira, Patricia Chaves; Carvalho, Claudio Jose Reis

    2009-01-01

    A necessidade de se conhecer a dinâmica de decomposição da serrapilheira (liteira) foliar de espécies potencialmente acumuladoras de fósforo (P) como Neea macrophylla e Cecropia palmata ao longo do tempo, é fundamental na seleção de mulch para a tecnologia de preparo de área para plantio denominada slash and mulch adotada em alguns sistemas agrícolas a Nordeste do Estado do Pará. Com o intuito de caracterizar quantitativamente e temporalmente as Taxas de Incremento de P e N ao longo do proces...

  19. Study protocol for the translating research in elder care (TREC: building context – an organizational monitoring program in long-term care project (project one

    Directory of Open Access Journals (Sweden)

    Cummings Greta G

    2009-08-01

    Full Text Available Abstract Background While there is a growing awareness of the importance of organizational context (or the work environment/setting to successful knowledge translation, and successful knowledge translation to better patient, provider (staff, and system outcomes, little empirical evidence supports these assumptions. Further, little is known about the factors that enhance knowledge translation and better outcomes in residential long-term care facilities, where care has been shown to be suboptimal. The project described in this protocol is one of the two main projects of the larger five-year Translating Research in Elder Care (TREC program. Aims The purpose of this project is to establish the magnitude of the effect of organizational context on knowledge translation, and subsequently on resident, staff (unregulated, regulated, and managerial and system outcomes in long-term care facilities in the three Canadian Prairie Provinces (Alberta, Saskatchewan, Manitoba. Methods/Design This study protocol describes the details of a multi-level – including provinces, regions, facilities, units within facilities, and individuals who receive care (residents or work (staff in facilities – and longitudinal (five-year research project. A stratified random sample of 36 residential long-term care facilities (30 urban and 6 rural from the Canadian Prairie Provinces will comprise the sample. Caregivers and care managers within these facilities will be asked to complete the TREC survey – a suite of survey instruments designed to assess organizational context and related factors hypothesized to be important to successful knowledge translation and to achieving better resident, staff, and system outcomes. Facility and unit level data will be collected using standardized data collection forms, and resident outcomes using the Resident Assessment Instrument-Minimum Data Set version 2.0 instrument. A variety of analytic techniques will be employed including descriptive

  20. Bringing Experience from the Field into the Classroom with the NOAA Teacher at Sea and PolarTREC Teacher Research Experience Programs

    Science.gov (United States)

    Eubanks, E. D.; Kohin, S.; Oberbauer, S.

    2008-12-01

    As a participant of the National Oceanic and Atmospheric Administration (NOAA), Teacher at Sea (2007) and the Arctic Research Consortium of the U.S., PolarTREC (2008) programs, I have had the opportunity to participate in hands-on research with leading scientific researchers from the tropics to the Arctic. These Teacher Researcher Experiences (TRE's) and the resulting relationships that have developed with the scientific community have been an asset to my professional development and have greatly enhanced my students' learning. The opportunity to participate in data collection and hands-on research with a NOAA researcher, Dr. Kohin, helped me bring shark, ocean, and ship science from my expedition onboard the NOAA Ship David Starr Jordan in the Channel Island region into my classroom. The new knowledge, experiences, and resources that I brought back allowed me to create lesson plans and host Shark Month--an activity that involved all 300 students in my school. My students were able to link real data regarding the location of sharks to practical application and still meet state standards. Likewise, the scientist from my PolarTREC expedition, Dr. Oberbauer, is assisting me in a long-term plan to incorporate his data into my classroom curricula. Already, my experiences from Barrow, Alaska, have been shared through webinars with my community and as a keynote speaker to over 600 Palm Beach County science teachers. We are also working together to develop a yearlong curriculum, in which my entire school of 300 students will discover interdisciplinary polar science. Participation in TRE's has been beneficial for my students and my community, but what is the return on the investment for the scientists who invited me to participate in their research? Both scientists have transferred their knowledge out of the laboratory and made a link between their research and a different generation--our future scientists. They become instrumental science leaders in a community of young

  1. Relación empírica entre la Terapia Racional Emotivo-Conductual (TREC) de Ellis y la Terapia Cognitiva (TC) de Beck en una muestra costarricense

    OpenAIRE

    Hannia Cabezas Pizarro; Leonor I. Lega

    2006-01-01

    En este estudio se explora una posible relación empírica entre la terapia racional emotivoconductual (TREC) de Ellis y la terapia cognitiva (TC) de Beck, dos de los modelos más conspicuos en el campo de la psicoterapia cognitiva actual. Si bien este modelo utiliza el término cognitivo en forma tal que se encuentra asociado con el afecto, la fisiología y la conducta (Dobson, 1986), sostiene que las perturbaciones emocionales, en esencia, son causadas por el proceso c...

  2. ECOLOGICAL FACTORS ASSOCIATED WITH THE ESTABLISHMENT OF RUSTIC SPECIES IN DISTURBED ECOSYSTEMS IN THE ATLANTIC FOREST, PIRAÍ, RIO DE JANEIRO STATE – BRAZIL

    Directory of Open Access Journals (Sweden)

    Hiram Feijó Baylão Junior

    2013-08-01

    Full Text Available http://dx.doi.org/10.5902/1980509810542 Disturbed ecosystems do not present original floristic composition. Their soils are depleted, shallow, stony, with low infiltration and present erosion with different levels of Geodynamics. The region has areas of pasture with sparse herbaceous vegetation which is weakened in every rain and fire, covering less ground. The individuals that colonized and settled in these environments were considered rustic species. This study raised and identified by census, the rustic species and their structure in the most degraded part (lower third of the watershed of Cacaria’s river at the base of the Serra do Mar, Piraí, Rio de Janeiro state, and evaluated the influence of ecological exposure, slope, elevation, topography and rock outcrops in the establishment and growth of these species. For the vegetation survey it was conducted census in an area of 22 hectares, where it was measured, geo-referenced and identified all spontaneous tree species that were isolated in a pasture area. Ecological factors exposure, elevation and slope were determined with a compass, altimeter and clinometer, respectively. We identified 131 individuals, representing 14 species, grouped into nine families. Tabernaemontana laeta Mart., Sparattosperma leucanthum (Vell. Schum., Machaerium hirtum (Vell. Stellfeld, Tabebuia chrysotricha (Mart. ex DC. Stan., Cecropia pachystachya Trec., Peltophorum dubium (Spreng. Taub., Guarea guidonia (L. Sleumer, Acacia polyphylla DC. and Psidium guajava L.were present in portions of the slope with exposure to the north, with altitudes from 60m to 80m and with slope strongly corrugated (20-45%, indicating a preference of these species for microhabitats with those characteristics. 

  3. FATORES DO MEIO FÍSICO ASSOCIADOS AO ESTABELECIMENTO DE ESPÉCIES RÚSTICAS EM ECOSSISTEMAS PERTURBADOS NA MATA ATLÂNTICA, PIRAÍ, RJ - BRASIL

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    Hiram Feijó Baylão Junior

    2013-01-01

    Full Text Available Disturbed ecosystems do not present original floristic composition. Their soils are depleted, shallow, stony, with low infiltration and present erosion with different levels of geodynamics. The study region has areas of pasture with sparse herbaceous vegetation which is weakened in every rain and fire, covering less ground. The individuals that colonized and settled in these environments were considered rustic species. This study raised and identified by census, the rustic species and their structure in the most degraded part (lower third of the watershed of Cacaria’s river at the base of the Serra do Mar, Piraí, Rio de Janeiro state, and evaluated the influence of ecological exposure, slope, elevation, topography and rock outcrops in the establishment and growth of these species. For the vegetation survey it was conducted census in an area of 22 hectares, where it was measured, geo-referenced and identified all spontaneous tree species that were isolated in a pasture area. Ecological factors exposure, elevation and slope were determined with a compass, altimeter and clinometer, respectively. There were identified 131 individuals, representing 14 species, grouped into nine families. Tabernaemontana laeta Mart., Sparattosperma leucanthum (Vell. Schum., Machaerium hirtum (Vell. Stellfeld, Tabebuia chrysotricha (Mart. ex DC. Stan., Cecropia pachystachya Trec., Peltophorum dubium (Spreng. Taub., Guarea guidonia (L. Sleumer, Acacia polyphylla DC. and Psidium guajava L.were present in portions of the slope with exposure to the north, with altitudes from 60 to 80m and with slope strongly corrugated (20-45%, indicating a preference of these species for microhabitats with those characteristics.

  4. Avaliação do efeito mutagênico do extrato hidroalcoólico bruto, por meio de bioensaios in vivo e prospecção fitoquímica de Cecropia glaziovii Sneth (embaúba, Cecropiaceae Evaluation of mutagenic effect of crude hydroalchoolic extract, using in vivo alive bioassays and phytochemical screening of Cecropia glaziovii Sneth (embaúba, Cecropiaceae

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    Victor S. Stange

    2009-06-01

    Full Text Available O gênero Cecropia é conhecido popularmente por "embaúba" e apresenta várias espécies medicinais, sendo que estudos com a espécie C. glaziovii Sneth indicam que o extrato aquoso apresenta efeitos broncodilatador, anti-hipertensivo e antidepressivo, provavelmente, atribuídos às catequinas, procianidinas e flavonóides. O presente estudo objetivou avaliar os potenciais efeitos tóxico, citotóxicos, clastogênicos e aneugênicos do extrato bruto hidroalcoólico de folhas de C. glaziovii, por meio da dose letal média (DL50, da análise de micronúcleo em células de medula óssea de roedores e do teste com Allium cepa e realizar a prospecção fitoquímica. Os resultados demonstraram que as concentrações testadas não causaram toxicidade aguda, nem apresentaram atividade clastogênica e aneugênica, sugerindo que o extrato de C. glaziovii não interferem na divisão celular. A prospecção fitoquímica indicou a presença de taninos, flavonóides, fenóis, antraquinonas, cumarinas, catequinas, proteínas, açúcares redutores, depsídeos/depsidonas e triterpenos. Mesmo assim, esses resultados não prescrevem o consumo terapêutico da espécie, sem continuidade da sua avaliação e do cumprimento de todas as etapas pré-clínicas e clínicas.The genus Cecropia is as known popularly "embaúba" and presents several medical species. Studies with the species C. glaziovii Sneth indicates that the hydroalchoolic extracts presents bronchodilator, anti-hypertensive and antidepressive effects, probably due its contests catechins, procyanidins and flavonoids. The aim of this study was to assess the potential toxic, cytotoxic, clastogenic and aneugenic effects of the crude hydroalchoolic extract of leaves of C. glaziovii, by means of the determination of the median lethal dose (LD50, the analysis of micronucleus in cells from bone marrow of rodents and through the Allium cepa assay, and also to performe the phytochemical screening. The results showed

  5. Levantamento etnobotânico de plantas utilizadas como anti-hiperlipidêmicas e anorexígenas pela população de Nova Xavantina-MT, Brasil Ethnobotanical survey of plants used as anti-hyperlipidemic and anorexigenic by the population of Nova Xavantina-MT, Brazil

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    Marcondes Alves B. da Silva

    2010-09-01

    Full Text Available O presente trabalho verificou a utilização de plantas medicinais encontradas no Cerrado mato-grossense para o tratamento de hiperlipidemias e obesidade. Entrevistas com 180 pessoas acima de 50 anos foram realizadas em Nova Xavantina-MT. O questionário abordou nome popular, parte utilizada, forma de preparo e uso das espécies citadas, além de informações gerais sobre o uso de plantas. As dez plantas mais citadas foram coletadas, identificadas e estudadas por meio de uma revisão bibliográfica. A maioria dos entrevistados (95,6% declarou utilizar plantas medicinais regularmente, sendo que 71,5% deles herdaram o conhecimento sobre plantas dos pais e avós e 94,20% relataram aconselhar o uso aos mais jovens. Além disso, 93,6% atestaram que as plantas são mais eficazes que os medicamentos de farmácia e 57% consideraram forte o efeito das mesmas, ou seja, sempre resolvem o problema de saúde. Quanto aos efeitos adversos, 95,9% disseram nunca ter sentido após o uso de plantas. Dos entrevistados, 56,7% conheciam ou já haviam utilizado plantas medicinais no tratamento de hiperlipidemias e obesidade, sendo citadas 54 espécies medicinais diferentes pertencentes a 53 gêneros e 38 famílias, com destaque para Fabaceae (13%. As dez plantas mais citadas foram: guatambu (Aspidosperma tomentosum Mart., quina-do-cerrado (Strychnos pseudoquina St. Hil., ipê-roxo [Tabebuia impetiginosa (Mart. Ex DC. Standl], embaúba (Cecropia pachystachya Trec., calunga (Simaba sp., pata-de-vaca [Bauhinia rufa (Bong. Steud.], mangaba (Hancornia speciosa Gomez, batata-de-tiú [Jatropha elliptica (Pohl. Muell. Arg.], folha-de-carne (Casearia sylvestris Sw. e manacá (Spiranthera odoratissima A. St.-Hil.. A folha foi a parte mais utilizada (46% e o preparo das plantas ocorre principalmente por meio de infusão citado por 36,5% dos entrevistados. Apesar do uso popular destas plantas no combate as hiperlipidemias e obesidade, há necessidade de estudos fitoquímicos e

  6. Triagem fitoquímica e avaliação das atividades trombolítica e citotóxica de Cecropia hololeuca Miq. (Urticaceae, Lippia alba (Mill. N.E.Br. ex P. Wilson (Verbenaceae e Zanthoxylum rhoifolium Lam (Rutaceae

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    João Victor Dutra GOMES1 ; Rafael Destefani FAITANIN

    2016-03-01

    Full Text Available Cecropia hololeuca, Lippia alba, e Zanthoxylum rhoifolium são espécies vegetais de ocorrência natural no Brasil, características de regiões de Mata Atlântica e, dentro de suas finalidades medicinais, estão incluídas ação anti-hipertensiva, digestiva e no tratamento de malária. Neste estudo, foram avaliados o perfil fitoquímico e as atividades citotóxica e trombolítica do extrato etanólico das folhas destas espécies vegetais. O perfil químico dos extratos foi obtido por meio de ensaios fitoquímicos clássicos, a fim de identificar as classes químicas presentes. A toxicidade preliminar foi avaliada frente Artemia salina e a atividade trombolítica foi determinada in vitro a partir da lise de coágulo de sangue humano. Os testes fitoquímicos indicaram a presença de alcaloides e flavonoides nos três extratos investigados. Saponinas, triterpenos e naftoquinonas foram detectados apenas em C. hololeuca. Essa não demonstrou toxicidade frente Artemia salina (DL50 >1000 ppm, enquanto Z. rhoifolium apresentou DL50 igual a 719,44 ppm e L. alba <250 ppm, o que indica atenção quanto à segurança no uso desta planta medicinal. A atividade trombolítica de L. alba e C. hololeuca foi de 6,43 ±2,08 e 9,64 ±1,83 %, respectivamente, mostrando baixa atividade. Por sua vez, Z. rhoifolium alcançou lise de 24,71 ±10,52 %, indicando promissora atividade (p <0,001. A atividade trombolítica de Z. rhoifolium justifica novos estudos, a fim de investigar os componentes responsáveis pela atividade. Perante a literatura, este é o primeiro relato da avaliação da atividade trombolítica destas espécies vegetais. Os resultados encontrados neste trabalho contribuem para o conhecimento químico-biológico das respectivas espécies.

  7. Abundância e frugivoria da quiropterofauna (Mammalia, chiroptera de um fragmento no noroeste do Estado do Paraná, Brasil = Chiropterofauna abundance and frugivory in a forest remnant in northwestern Paraná State, Brazil

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    João Eduardo Cavalcanti Brito

    2010-07-01

    Full Text Available A abundância e a frugivoria de morcegos que compõem a taxocenose em uma área de mata ripária, à margem esquerda do rio Ivaí, foram foco do presente estudo. O Recanto Marista possui 57,6 hectares, dos quais 40,8 são cobertos por Floresta Estacional Semidecidual, situado no município de Doutor Camargo, região Noroeste do Estado do Paraná. Foram realizadas 14 noites de capturas de morcegos de maio de 2007 a janeiro de 2008, com redesneblina (7 x 2,5 m, totalizando 13.475 m² h de esforço amostral, distribuído em 72h de esforço. Foram capturados 193 indivíduos, representantes de dez espécies, pertencentes a duas famílias: Phyllostomidae (Artibeus lituratus, Sturnira lilium, Carollia perspicillata, Artibeus cf. fimbriatus, Artibeus planirotris, Desmodus rotundus e Pygoderma bilabiatum e Vespertilionidae (Myotis nigricans, Eptesicus sp. e Lasiurus blossevillii. Um representante da família Molossidae (Molossus rufus foi encontrado morto no solo. Foram consumidos frutos pertencentes às famílias Moraceae (Ficus guaranitica, Ficus insipida, Ficus sp. e Maclura tinctoria, Solanaceae (Solanum aspero-lanatum e Solanum sp., Piperaceae (Piper aduncum, Piper amalago e Piper sp. e Urticaceae (Cecropia pachystachya e Cecropia sp..This study aims to evaluate the abundance and frugivory of bats from the Recanto Marista, a small riparian forest remnant in the margins of the Ivaí river. The Recanto Marista has 57.6 ha, of which 40.8 ha are covered by semideciduous seasonal forest and is located in the Doutor Camargo municipality. Collections were conducted from May 2007to January 2008 using mist nets (7 x 2.5 m totaling 13,475 m² h and comprising about 72 hours. Ten species were found pertaining to two families, Phyllostomidae (Artibeus lituratus, Sturnira lilium, Carollia perspicillata, Artibeus cf. fimbriatus, Artibeus planirotris, Desmodus rotundus and Pygoderma bilabiatum and Vespertilionidae (Myotis nigricans, Eptesicus sp. and Lasiurus

  8. Abundância e frugivoria da quiropterofauna (Mammalia, chiroptera de um fragmento no noroeste do Estado do Paraná, Brasil - doi: 10.4025/actascibiolsci.v32i3.5351 Chiropterofauna abundance and frugivory in a forest remnant in northwestern Paraná State, Brazil - doi: 10.4025/actascibiolsci.v32i3.5351

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    Janaina Gazarini

    2010-09-01

    Full Text Available A abundância e a frugivoria de morcegos que compõem a taxocenose em uma área de mata ripária, à margem esquerda do rio Ivaí, foram foco do presente estudo. O Recanto Marista possui 57,6 hectares, dos quais 40,8 são cobertos por Floresta Estacional Semidecidual, situado no município de Doutor Camargo, região Noroeste do Estado do Paraná. Foram realizadas 14 noites de capturas de morcegos de maio de 2007 a janeiro de 2008, com redes-neblina (7 x 2,5 m, totalizando 13.475 m² h de esforço amostral, distribuído em 72h de esforço. Foram capturados 193 indivíduos, representantes de dez espécies, pertencentes a duas famílias: Phyllostomidae (Artibeus lituratus, Sturnira lilium, Carollia perspicillata, Artibeus cf. fimbriatus, Artibeus planirotris, Desmodus rotundus e Pygoderma bilabiatum e Vespertilionidae (Myotis nigricans, Eptesicus sp. e Lasiurus blossevillii. Um representante da família Molossidae (Molossus rufus foi encontrado morto no solo. Foram consumidos frutos pertencentes às famílias Moraceae (Ficus guaranitica, Ficus insipida, Ficus sp. e Maclura tinctoria, Solanaceae (Solanum aspero-lanatum e Solanum sp. , Piperaceae (Piper aduncum, Piper amalago e Piper sp. e Urticaceae (Cecropia pachystachya e Cecropia sp..This study aims to evaluate the abundance and frugivory of bats from the Recanto Marista, a small riparian forest remnant in the margins of the Ivaí river. The Recanto Marista has 57.6 ha, of which 40.8 ha are covered by semideciduous seasonal forest and is located in the Doutor Camargo municipality. Collections were conducted from May 2007 to January 2008 using mist nets (7 x 2.5 m totaling 13,475 m² h and comprising about 72 hours. Ten species were found pertaining to two families, Phyllostomidae (Artibeus lituratus, Sturnira lilium, Carollia perspicillata, Artibeus cf. fimbriatus, Artibeus planirotris, Desmodus rotundus and Pygoderma bilabiatum and Vespertilionidae (Myotis nigricans, Eptesicus sp. and Lasiurus

  9. Frugivory by phyllostomid bats (Mammalia: Chiroptera) in a restored area in Southeast Brazil

    Science.gov (United States)

    Silveira, Maurício; Trevelin, Leonardo; Port-Carvalho, Marcio; Godoi, Simone; Mandetta, Elizabeth Neuenhaus; Cruz-Neto, Ariovaldo P.

    2011-01-01

    We studied the potential contribution of frugivorous bats to the reestablishment of vegetational diversity in a restored area. We analysed the diets of the bat species and the differences between them in the consumption of fruits of autochtonous and allochthonous species. Planted (autochtonous) species were the basis of diets, especially Solanum mauritianum and Cecropia pachystachya, whereas for allochthonous species we found that Piperaceae to be of particular importance. Carollia perspicillata was the main seed disperser for allochthonous species, and potentially the most important bat in the promotion of vegetation diversity in the study area. Our results suggest that frugivorous bats are especially important in the reestablishment of vegetation in disturbed areas, and that restorarion efforts should focus on the planting of different zoochorous species that would guarantee a high year-round fruit production, thereby facilitating natural plant reestablishment by frugivorous bats in regenerating areas.

  10. Endocytosis of the major yolk proteins of the silkmoth, Hyalophora cecropia: Uptake kinetics and interactions

    International Nuclear Information System (INIS)

    The oocytes of Lepidopteran insects take up several yolk proteins in defined proportions even though their relative availability in the hemolymph changes during the several days required to complete yolk formation in all the eggs. There are three hemolymph yolk precursors, vitellogenin, microvitellogenin and lipophorin; one precursor, paravitellogenin is produced in the ovary. The control mechanism for their proportional endocytosis is not known. In this thesis, the author describe the purification of all four proteins and the radiolabeling of the hemolymph precursors. The radiolabeled proteins were tested with an in vitro incubation system to assess the biological activity of the proteins and the reliability of the incubation methods. All of the labeled probes were transferred from the incubation medium to yolk spheres within the oocyte in a saturable, energy-dependent, and stage-specific manner. The rates of uptake were similar to the estimated rates of uptake in situ. The concentration dependence of in vitro uptake was investigated and found to be consistent with in situ concentrations and the composition of yolk in mature eggs. Two precursors, vitellogenin and lipophorin, competed for uptake indicating that they share a common binding site while the third, microvitellin, did not compete with the others. Though vitellogenin and lipophorin competed for uptake, only vitellogenin displayed the unique ability to increase the uptake rate of microvitellin and fluid in vitro

  11. Comparison of the diet of Alouatta caraya (Primates: Atelidae between a riparian island and mainland on the Upper Parana River, southern Brazil Comparação da dieta de Alouatta caraya (Primates: Atelidae em mata ciliar insular e continental na região do Alto rio Paraná, Sul do Brasil

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    Gabriela Ludwig

    2008-09-01

    Full Text Available Howler monkeys (Alouatta Lacèpéde, 1799 are folivores-frugivores with flexible diets depending on conditions. Here, we compare the diets of Alouatta caraya (Humboldt, 1812 in two riparian forests (island and mainland, in Porto Rico region, Upper Paraná River, Southern Brazil. Howlers were followed from October 2004 to September 2005 in the riparian forest of a 1,050 ha island and in the continuous riparian forest on the mainland (left bank of the river. The "scan sampling" method with instantaneous samples every 15 minutes was used. Besides vines, diet breadth was similar: 17 species consumed on the island versus 16 species on the mainland. Both consumed leaves followed by fruits more than any other food type (leaves: island - 65%, mainland - 49%, fruits: island - 24%, mainland - 46%. Even though the plant Cecropia pachystachya Trécul is less abundant in the mainland it was the item most consumed in both locations all year long, which suggests its importance for the howlers. Diet also varied both seasonally and between the island and mainland, apparently following changes in local abundance of each item and due to plant phenologies.Os bugios (Alouatta Lacèpéde, 1799 são primatas folívoros-frugívoros que podem adaptar suas dietas dependendo das condições do ambiente. O presente trabalho compara a dieta de grupos de Alouatta caraya (Humboldt, 1812 presentes em matas ciliares estruturalmente diferentes (ilha e continente, na região de Porto Rico, Alto rio Paraná, sul do Brasil. Os bugios-pretos foram seguidos de outubro de 2004 a setembro de 2005 em mata ciliar de uma ilha fluvial de 1050 ha e em mata ciliar contínua da margem esquerda do rio. Foi utilizado o método "scan sampling" em amostragens instantâneas com intervalos de 15 minutos. Além das lianas, 17 espécies foram consumidas na ilha versus 16 espécies no continente. Ambos os grupos consumiram mais folhas seguido de frutos do que qualquer outro tipo de alimento (folhas

  12. Dieta de morcegos filostomídeos (Mammalia, Chiroptera, Phyllostomidae em fragmento urbano do Instituto São Vicente, Campo Grande, Mato Grosso do Sul

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    Mariana Pires Veiga Martins

    2014-01-01

    Full Text Available Os morcegos (Chiroptera, devido à sua diversidade e abundância exercem um importante papel ecológico para o ecossistema. O objetivo deste trabalho foi reportar a dieta das espécies de morcegos frugívoros capturados nos fragmentos do Instituto São Vicente, zona urbana do município de Campo Grande, MS. As coletas ocorreram entre setembro de 2011 e Junho de 2012, sendo realizadas com o auxílio de redes-de-neblina. Foram realizadas 154 capturas, com ocorrência de 10 espécies representantes de três famílias, sendo predominantes as espécies frugívoras. Dentre as capturas foram obtidas 41 amostras fecais, onde se verificou a presença de polpa, vestígios de artrópodes e sementes. O recurso mais utilizado por quirópteros foram plantas pioneiras, constatado através do predomínio de sementes da espécie Cecropia pachystachya, consumida em maior intensidade por Artibeus lituratus. Os resultados ressaltam a importância destes animais no ambiente, em especial no processo de regeneração dessas áreas através da dispersão de sementes.

  13. Antioxidant properties of species from the Brazilian cerrado by different assays

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    K.S. Farias

    2013-01-01

    Full Text Available The purpose of this study was to screen the antioxidant activity of medicinal plant extracts from the Brazilian cerrado, through other methods than the total phenolic content and its correlation with the antioxidant activity. Ethanolic extracts of ten species were evaluated through three antioxidant assays, in vitro, including 2,2-diphenyl-1-picrylhydrazyl (DPPH, total antioxidant activity and reducing power; and by using the Folin-Ciocalteu method the total phenolic content was determined. Ethanolic extracts of Stryphnodendron obovatum, Cecropia pachystachya and Duguetia furfuraceae showed strong antioxidant activity (IC50<5 µg mL-1 in the DPPH free radical scavenging assay; the species Vernonia phosphorea, Hymenaea stignocarpa and Jacaranda ulei may also be highlighted. These results were confirmed in the assays of total antioxidant capacity and reducing power. The extracts of S. obovatum and V. phosphorea showed an abundant phenolic content; therefore, the phenolic content may play a role in the antioxidant activity. These two species, traditionally used in Brazil, showed great power in these assay systems and may be a promising source for the development of natural antioxidants and future candidates for phytochemical and pharmacological studies in related diseases.

  14. The waterfront windmill project and TREC's windshare model for community-based renewables development

    International Nuclear Information System (INIS)

    Plans have been developed for building two wind turbines on Toronto's waterfront, on the grounds of the exhibition for the project called Waterfront Windmill Project. The electricity generated by each individual turbine, 1,400,000 kilowatt hours per year, could meet the needs of 250 four-person homes. This project represents an emissions-free power generation, and the energy will be distributed to the hydropower grid of the City of Toronto. The requirement for nuclear and coal-generated energy will therefore be reduced while reducing the emissions of carbon dioxide and other greenhouse gases into the atmosphere. The creation of an urban-based community-owned turbine fits well with the policy of the Toronto Renewable Energy Coop, which is committed to working with the marketplace. The lower cost to the consumer of the market deregulation coal generated energy is a concern. figs

  15. SafeTREC - UCTC Seminar: Flexible Work Schedules and Transportation Behavior at UC Berkeley

    OpenAIRE

    Ng, Wei-Shiuen

    2014-01-01

    Flexible work schedules could be a solution to the problems of increasing transportation demand, congestion, energy use, and carbon emissions. The higher the flexibility of work schedule, the less time employees would spend commuting to work. Hence, reducing trip frequency and total distance traveled. Flexible work schedules have been studied extensively in transportation studies, especially in areas of peak period congestion, road pricing, transit services peak and off-peak utilization, and ...

  16. Análise fitossociológica de um remanescente de vegetação na microbacia do Córrego Criminoso (Bacia do Rio Taquari, Coxim, MS, Brasil: subsídios para a recomposição da vegetação Phytosociological analysis of a vegetation remnant in the Córrego Criminoso Basin (Taquari River Basin, Coxim District, Mato Grosso do Sul, Brazil: data for vegetation recovery studies

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    Adriana Maria Güntzel

    2011-09-01

    Full Text Available O objetivo deste estudo foi realizar a análise florística e fitossociológica preliminar em um remanescente de vegetação na área de entorno do Córrego Criminoso, visando subsidiar futuros projetos de recomposição da vegetação. A área total do remanescente foi determinada com o auxílio de GPS e dos programas Pathfinder e Autocad. Amostragens de indivíduos com CAP maior ou igual a 20 cm foram realizadas em 20 parcelas de 300 m² distribuídas na área. Foram encontradas 26 famílias botânicas contendo 36 gêneros e 49 espécies. A família Leguminosae foi a mais rica em espécies, seguida da família Annonaceae. A espécie Xylopia aromatica foi a mais freqüente, apresentando valores de IVI e IVC de 99,77 e 85,73, respectivamente. Observou-se que mais de 50% das espécies presentes na área são pioneiras ou secundárias, sendo cinco consideradas típicas de matas ciliares: Tapirira guianenses, Cecropia pachystachya, Terminalia argentea, Ocotea pulchellae e Luehea grandiflora. O remanescente de vegetação do entorno do Córrego Criminoso encontra-se fortemente degradado, necessitando de ações de manejo específicos nos fragmentos vegetados e nas áreas destituídas de vegetação, cujas recomendações são propostas.The aim of this study was to complete a preliminary, floristic, phytosociological analyses of a vegetation remnant in the Criminoso Stream Basin, in order to provide data for future projects focusing on vegetation recovery. The total area of the remnant was determined using a GPS and the software Pathfinder and Autocad. Samples of individuals larger or equal to 20 cm CBH were made in 20 quadrats that were 300 m². Thirty-six genera and 49 species, within 26 botanical families, were found. The family Leguminosae was the richest in species, followed by the Annonaceae. Xylopia aromatica was the most frequent species, presenting values of IVI and IVC of 99.77 and 85.73, respectively. More than 50% of the species present

  17. Estrutura fitossociológia de um fragmento natural de floresta inundável em área de orizicultura irrigada, município de Lagoa da Confusão, Tocantins Phytosociologial structure of a natural fragment of floodplain forest in area of irrigated rice cultivation, municipal district of Lagoa da Confusão, Tocantins, Brazil

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    Elizabeth Rodrigues Brito

    2006-10-01

    Full Text Available Os fragmentos naturais de florestas inundáveis conhecidos como ipucas localizam-se na planície do Araguaia, sob a forma de depressões naturais, que no Estado do Tocantins estão situados em áreas de planícies de inundação, que favorece seu alagamento e, conseqüentemente, o maior tempo de retenção da água em épocas de elevada precipitação. O presente estudo foi desenvolvido na fazenda Lago Verde, Município de Lagoa da Confusão, Tocantins, situado entre as coordenadas UTM: 643586 e 644060 leste e 8792795 e 8799167 norte. O objetivo do trabalho foi caracterizar a estrutura de um fragmento de floresta inundável de aproximadamente um hectare, inserido em área de orizicultura irrigada. Para o levantamento fitossociológico, foram amostrados todos os indivíduos arbustivo-arbóreos com perímetro a 1,30 m do solo (PAP > 15 cm. Ao todo, foram encontrados 807 indivíduos, 35 famílias e 70 espécies. As espécies com maior VC, em ordem decrescente, foram Hirtella racemosa Lam., Qualea multiflora Mart. e Cecropia pachystachya Trécul. As famílias mais ricas em espécies foram Fabaceae (9, Vochysiaceae (6, Annonaceae e Malvaceae (4. O índice de diversidade de Shannon (H' foi de 3,44. A distribuição de classes de diâmetro apresentou curva na forma de "J" invertido, estando a maioria dos indivíduos na primeira classe.The natural fragments of floodplain forests known as "ipucas" are located in the Araguaia plain, in form of natural depressions, which are located in areas of floodplains in the State of Tocantins, favoring its flooding and, consequently, the largest period of water retention during periods of high precipitation. The present study was developed at Lagoa Verde farm, municipal district of Lagoa da Confusão, Tocantins between the coordinates UTM: 643586 and 644060 east and 8792795 and 8799167 north. The objective of the work was to characterize the structure of a floodplain forest fragment of approximately one-hectare area

  18. Compatibilidade simbiótica de fungos micorrízicos arbusculares com espécies arbóreas tropicais Symbiotic compatibility of arbuscular mycorrhizal fungi with tropical tree species

    Directory of Open Access Journals (Sweden)

    Enrique Pouyu-Rojas

    2006-06-01

    Full Text Available A revegetação com espécies arbóreas é uma estratégia adequada, quando se pretende a reabilitação de terras degradadas. Entretanto, o estabelecimento e o crescimento destas em solos pobres em nutrientes dependem de diversos fatores como a capacidade de formar e beneficiar-se das micorrizas. No presente estudo, realizado em casa de vegetação na Universidade Federal de Lavras, Minas Gerais- Brasil, avaliaram-se aspectos da relação fungos micorrízicos arbusculares e espécies arbóreas do sudeste brasileiro. Os fungos estudados foram: Scutellospora pellucida, Acaulospora scrobiculata, Entrophospora colombiana, Gigaspora gigantea, Gigaspora margarita, Glomus etunicatum, Scutellospora gregaria, Glomus clarum e isolados oriundos de agrossistemas e de mata, os quais foram inoculados em dezesseis espécies vegetais: Luehea grandiflora, Cecropia pachystachya, Schinus terebinthifolius, Machaerium nyctitans, Senna macranthera, Senna spectabilis, Solanum granuloso-leprosum, Caesalpinea ferrea, Tabebuia serratifolia, Maclura tinctoria, Guazuma ulmifolia, Acacia polyphylla, Mimosa caesalpiniaefolia, Enterolobium contortisiliquum, Trema micrantha e Cedrela fissilis. Estas espécies apresentaram comportamento diferenciado em relação à susceptibilidade aos fungos e às respostas em crescimento decorrentes da inoculação. A amplitude de eficiência simbiótica dos fungos variou muito, sendo o Gl. clarum, E. colombiana, S. pellucida e Gl. etunicatum os fungos de maior amplitude, beneficiando mais de 80 % das espécies vegetais estudadas, e a A. scrobiculata a espécie de comportamento mais restrito em relação aos hospedeiros. A análise da compatibilidade fungo-hospedeiro e o comportamento geral das espécies em associação indicam a ocorrência de seletividade diferenciada na rela��ão fungo-hospedeiro, existindo combinações de eficiência simbiótica muito variável para as plantas hospedeiras. A importância destes resultados para a

  19. Feeding ecology of the Green-cheeked parakeet (Pyrrhura molinae in dry forests in western Brazil Ecologia alimentar da Tiriba-de-cara-suja (Pyrrhura molinae em matas secas do oeste brasileiro

    Directory of Open Access Journals (Sweden)

    J. Ragusa-Netto

    2007-05-01

    Full Text Available The genus Pyrrhura includes small to medium-sized parakeets, which inhabit both low and dry alongside tall rainforests, mainly in South America. Pyrrhura molinae is still common, year round, in the markedly seasonal forests of western Brazil. This parakeet, as well as most Neotropical parrots, continues to be poorly understood. Hence, in the present study I examined their foraging ecology both in a highly deciduous and in a semi-deciduous forest in western Brazil. In addition, I assessed the relationship between food resource production (flowers and fruits, and the diet of this parakeet. Pyrrhura molinae exhibited a flexible diet consisting of 16 tree species, from which it consumed flowers (three species, seeds (three species, fruit pulp or aril (four species, and both pulp and seeds (six species. Parakeets consumed a wide array of fleshy fruits in the semi-deciduous forest, especially Cecropia pachystachya catkins. Conversely, in the highly deciduous forest they extensively foraged for figs (70% of the diet, in addition to nectar and seeds from dry fruits. Ficus calyptroceras, besides being abundant, bore fruits year round, and was substantially used by parakeets every month. Potentially, by exploiting a diverse set of plant food resources, and particularly due to the substantial use of figs, asynchronously produced, Pyrrhura molinae persists during the long dry season in the markedly seasonal forests of western Brazil.O gênero Pyrrhura é constituido de pequenos periquitos comuns tanto em matas secas quanto úmidas, sobretudo da América do Sul. Pyrrhura molinae ocorre durante o ano todo em florestas altamente sazonais do oeste brasileiro. Essa espécie, bem como a maioria dos psitacídeo, permanece pouco conhecida. Portanto, nesse estudo, foi examinada a ecologia alimentar de P. molinae em dois tipos de florestas secas (altamente decídua e semidecídua, do oeste brasileiro, bem como as relações entre a produção de flores frutos e a

  20. Estrutura da comunidade de morcegos (Mammalia, Chiroptera da Estação Experimental de Itirapina, estado de São Paulo, Brasil

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    Therys M. Sato

    2015-01-01

    Full Text Available A estrutura de comunidades de morcegos no Brasil ainda é pouco estudada e vêm sofrendo sérias modificações devido à perda de habitats. O principal objetivo do presente trabalho foi estudar a comunidade de morcegos da Estação Experimental de Itirapina, município de Itirapina, Estado de São Paulo. Nesta Estação, além das espécies cultivadas de Eucalyptus e Pinus, há diversas plantas que podem fornecer alimento aos morcegos. Entre julho de 2001 e julho de 2006, foram realizadas 58 sessões noturnas de captura de morcegos com 4 a 12 redes-de-neblina dispostas a cada sessão. Nesse período, foram capturados 720 indivíduos de 16 espécies de morcegos dos quais 13 pertencem à família Phyllostomidae, duas à Vespertilionidae e uma à Molossidae. A curva cumulativa de espécies atingiu o equilíbrio, no qual apenas espécies raras são acrescentadas. Cinco espécies (Artibeus lituratus, Platyrrhinus lineatus, Carollia perspicillata, Glossophaga soricina e Sturnira lilium representaram 80% dos morcegos capturados na Estação Experimental, onde se alimentavam de frutos de plantas pioneiras, tais como Cecropia pachystachya, Solanum spp. e Piper spp. A prevalência do vírus rábico foi zero na amostragem das 10 espécies analisadas. Apesar de estar muito modificada, a Estação Experimental de Itirapina pode ser uma importante área de abrigo e alimento para os morcegos e tem potencial de atuar como corredor entre áreas de Cerrado e Mata Atlântica.

  1. Plantas hipoglicemiantes utilizadas por comunidades tradicionais na Bacia do Alto Paraguai e Vale do Guaporé, Mato Grosso - Brasil

    Directory of Open Access Journals (Sweden)

    M. Macedo

    2004-01-01

    Full Text Available No Brasil, com inúmeras espécies tropicais, evidencia-se o conhecimento e uso da vegetação medicinal pelas comunidades quilombolas, ribeirinhas, rurais, tradicionais e indígenas, que são praticadas até os dias atuais. O Estado de Mato Grosso pela sua localização no Planalto Central brasileiro possui uma variedade destas comunidades, que utilizam estas plantas medicinais, levando em consideração o conhecimento popular passado de geração em geração. Esta pesquisa visa identificar a forma de coleta e os usos desse grupo vegetal indicados pelos usuários. O estudo foi realizado em 15 comunidades tradicionais (não indígenas na Bacia do Alto Paraguai e 2 (duas no Vale do Guaporé. A coleta de dados deu-se através de líderes comunitários, benzedeiras, parteiras e usuários utilizando o método qualitativo, mediante abordagem qualitativa, com auxílio de entrevistas estruturadas, semi-estruturadas e abertas. Dentre as espécies identificadas 17 estacam-se para o tratamento do Diabetes, dentre elas citam-se: Anacadium humile; Bauhinia glabra; Cecropia pachystachya; Hancornia speciosa; Heteropteris aphrodisiaca; Leonotis nepetifolia; Momordica charantia; Solanum lycocarpum. Registra-se ainda que as partes mais utilizadas desses vegetais são: folhas, casca do caule, raiz, planta toda, brotos, óleos dos frutos e polvilho dos frutos. De acordo com os usuários a maioria das plantas não podem ser colhidas após o nascer do sol e o preparo deve ser feito com folhas secas ou que tenham sido submetidas ao processo de secagem sobre o fogão de lenha ou em local abafado.

  2. TREC-SAVE: a randomised trial comparing mechanical restraints with use of seclusion for aggressive or violent seriously mentally ill people: study protocol for a randomised controlled trial

    OpenAIRE

    Ferreira Marco AV; Coutinho Evandro SF; Huf Gisele; Ferreira Silvana; Mello Flavia; Adams Clive E

    2011-01-01

    Abstract Background Thousands of people whose aggression is thought due to serious mental illness are secluded or restrained every day. Without fair testing these techniques will continue to be used outside of a rigorous evidence base. With such coercive treatment this leaves all concerned vulnerable to abuse and criticism. This paper presents the protocol for a randomised trial comparing seclusion with restraints for people with serious mental illnesses. Methods/Design Setting-General psychi...

  3. Ensaio para detectar bergapteno na casca e no caule de Brosimum gaudichaudii Trec através da produção de melanina em actinomicetos

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    M.L.P. Neves

    2002-01-01

    Full Text Available Plant extracts containing furocoumarins compounds were identified by using melanin producer strains of Nocardiopis sp (DAUFPE-361 and non producer strains of Streptomyces sp (DAUFPE-87. Ethanol, methanol and acetone extracted compounds from conduru (Brosimum gaudichaudii bark and stem were evaporated and added to tubes containing ISP7 medium (tyrosine agar. This medium was inoculated with spore suspension (10(6-10(7 CFU prepared from the different actinomycetes strains. The ethanol fraction (pH 9.0 from both bark and stem induced pigmentation in actinomycetes melanin non producer strains and increased the pigmentation in producer strains indicating presence of furocoumarins in the correspondent plant extracts.

  4. Insights into the impact and use of research results in a residential long-term care facility: a case study

    OpenAIRE

    Cranley Lisa A; Birdsell Judy M; Norton Peter G; Morgan Debra G; Estabrooks Carole A

    2012-01-01

    Abstract Background Engaging end-users of research in the process of disseminating findings may increase the relevance of findings and their impact for users. We report findings from a case study that explored how involvement with the Translating Research in Elder Care (TREC) study influenced management and staff at one of 36 TREC facilities. We conducted the study at ‘Restwood’ (pseudonym) nursing home because the Director of Care engaged actively in the study and TREC data showed that this ...

  5. Core Temperature Measurement During Submaximal Exercise: Esophageal, Rectal, and Intestinal Temperatures

    Science.gov (United States)

    Lee, Stuart M. C.; Williams, W. Jon; Schneider, Suzanne M.

    2000-01-01

    The purpose of this study was to determine if intestinal temperature (Tin) might be in acceptable alternative to esophageal (Tes) and rectal temperature (Trec) to assess thermoregulation during supine exercise. We hypothesized that Tin would have values similar to Tes and a response time similar to Trec, but the rate of temperature change across time would not be different between measurement sites. Seven subjects completed a continuous supine protocol of 20 min of rest, 20 min of cycle exercise at 40% peak oxygen consumption (VO2pk), 20 min of cycle exercise at 65% V02pk, and 20 min of recovery. Tes, Trec, and Tin were recorded each min throughout the test. Temperatures were not different after 20 min of rest, but Trec was less than the Tes and Tin at the end of the 40% and 65% VO2pk stages. After 20 min of recovery, Tes was less than either Trec or Tin, which were not different from each other. Time to threshold for increased temperature from rest was greater for Trec than Tes but not different from Tin. Time to reach peak temperature was greater for Tin and Trec than Tes. Similarly, time to a decrease in temperature after exercise was greater for Trec than Tes, but not different from Tin. The rate of temperature change from threshold to the end of the 40% VO2pk stage was not different between measurement sites. However, the rate of change during recovery was more negative for Tes than Tin and Trec, which were different from each other. Measurement of Tin may he an acceptable alternative to Tes and Trec with an understanding of its limitations.

  6. A Statistical Framework for eQTL Mapping Using RNA-seq Data

    OpenAIRE

    Sun, Wei

    2011-01-01

    RNA-seq may replace gene expression microarrays in the near future. Using RNA-seq, the expression of a gene can be estimated using the total number of sequence reads mapped to that gene, known as the Total Read Count (TReC). Traditional eQTL mapping methods, such as linear regression, can be applied to TReC measurements after they are properly normalized. In this paper, we show that eQTL mapping, by directly modeling TReC using discrete distributions, has higher statistical power than the two...

  7. Gains from an integrated market for tradable renewable energy credits

    International Nuclear Information System (INIS)

    Decoupling the environmental attributes of renewable energy (RE) generation from the physical unit of energy is an innovative mechanism for marketing green or renewable power. The introduction of 'Tradable Renewable Energy Credits' (TRECs) allows the green power attributes of energy to be sold or traded separately from the physical unit of energy. Since the green power certificate system removes potential locational and physical bottlenecks, both suppliers and consumers gain flexibility in the marketplace. The TREC is also an efficient tool to meet 'Renewable Portfolio Standard' (RPS) required by different states in the US. This paper discusses the RPS requirements for different states and examines the implications of an integrated TREC market. It offers a competitive setting to the consumers to pay for renewable energy and a cost effective tool to support renewable energy generation [Grace and Wiser, 2002]. This paper also highlights some practical difficulties that should be addressed in order to establish an efficient integrated TREC market

  8. A New Species of Neotropical Carpenter Ant in the Genus Camponotus (Hymenoptera: Formicidae, Apparently without Major Workers

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    William Mackay

    2012-01-01

    Full Text Available We describe a new species of carpenter ants from Ecuador, which apparently has an obligatory relationship with the ant plants Cecropia membranacea Trécul, C. herthae Diels and C. marginalis Cuatrec. The workers are relatively small and hairy, and based on a number of collections, it does not appear to have major workers. We compare the new species to Camponotus balzani, to which it appears to be similar and which has normal major workers, and also lives in Cecropia spp.

  9. PRESERVANDO CECROPIAIS NATIVOS EM PAISAGENS AMAZÔNICAS: UMA ESTRATÉGIA ECOLÓGICA EM SOLOS DEFICIENTES POR FÓSFORO

    Directory of Open Access Journals (Sweden)

    Patricia Chaves de Oliveira

    2010-06-01

    Full Text Available A conservação de espécies prestadoras de serviços ecológicos em paisagens amazônicas como os agros-ecossistemas locais do Baixo Amazonas é de extrema importância no input de minerais através da serrapilheira produzida por estas espécies. Os cecropiais nativos, formados pela espécie Cecropia palmata, dentre outras, a qual é acumuladora de fósforo (P em tecidos foliares e cascas podem prestar um serviço ecológico em paisagens amazônicas com deficiência por fósforo. Os objetivos desta pesquisa foram a observação da translocação do fósforo em folhas ontogeneticamentes diferentes de Cecropia palmata; bem como, a análise da dinâmica do fósforo em solos sob conglomerados de Cecropia palmata. Os teores de fósforo (P em tecidos foliares de Cecropia palmata demonstraram valores elevados, em torno de 8.4 mg/kg em folhas novas e 5,6mg/kg em folhas com maturação fisiológica, sugerindo serrapilheira de alta qualidade para o ambiente. Além disso, os solos sob influência da rizosfera desta espécie apresentaram importantes hot spots de fósforo.

  10. Inverse associations between obesity indicators and thymic T-cell production levels in aging atomic-bomb survivors.

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    Kengo Yoshida

    Full Text Available Reduction of the naive T-cell population represents a deteriorating state in the immune system that occurs with advancing age. In animal model studies, obesity compromises the T-cell immune system as a result of enhanced adipogenesis in primary lymphoid organs and systemic inflammation. In this study, to test the hypothesis that obesity may contribute to the aging of human T-cell immunity, a thousand atomic-bomb survivors were examined for obesity status and ability to produce naive T cells, i.e., T-cell receptor excision circle (TREC numbers in CD4 and CD8 T cells. The number of TRECs showed a strong positive correlation with naive T cell numbers, and lower TREC numbers were associated with higher age. We found that the TREC number was inversely associated with levels of obesity indicators (BMI, hemoglobin A1c and serum CRP levels. Development of type-2 diabetes and fatty liver was also associated with lower TREC numbers. This population study suggests that obesity with enhanced inflammation is involved in aging of the human T-cell immune system. Given the fact that obesity increases the risk of numerous age-related diseases, attenuated immune competence is a possible mechanistic link between obesity and disease development among the elderly.

  11. Inverse associations between obesity indicators and thymic T-cell production levels in aging atomic-bomb survivors.

    Science.gov (United States)

    Yoshida, Kengo; Nakashima, Eiji; Kubo, Yoshiko; Yamaoka, Mika; Kajimura, Junko; Kyoizumi, Seishi; Hayashi, Tomonori; Ohishi, Waka; Kusunoki, Yoichiro

    2014-01-01

    Reduction of the naive T-cell population represents a deteriorating state in the immune system that occurs with advancing age. In animal model studies, obesity compromises the T-cell immune system as a result of enhanced adipogenesis in primary lymphoid organs and systemic inflammation. In this study, to test the hypothesis that obesity may contribute to the aging of human T-cell immunity, a thousand atomic-bomb survivors were examined for obesity status and ability to produce naive T cells, i.e., T-cell receptor excision circle (TREC) numbers in CD4 and CD8 T cells. The number of TRECs showed a strong positive correlation with naive T cell numbers, and lower TREC numbers were associated with higher age. We found that the TREC number was inversely associated with levels of obesity indicators (BMI, hemoglobin A1c) and serum CRP levels. Development of type-2 diabetes and fatty liver was also associated with lower TREC numbers. This population study suggests that obesity with enhanced inflammation is involved in aging of the human T-cell immune system. Given the fact that obesity increases the risk of numerous age-related diseases, attenuated immune competence is a possible mechanistic link between obesity and disease development among the elderly. PMID:24651652

  12. A Call to Include Severe Combined Immunodeficiency in Newborn Screening Program

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    Raz Somech

    2014-01-01

    Full Text Available Quantification of the T cell receptor excision circles (TRECs has recently emerged as a useful non-invasive clinical and research tool to investigate thymic activity. It allows the identification of T cell production by the thymus. Quantification of TREC copies has recently been implemented as the preferred test to screen neonates with severe combined immunodeficiency (SCID or significant lymphopenia. Neonatal genetic screening for SCID is highly important in countries with high rates of consanguinous marriages, such as Israel, and can be used for early diagnosis, enabling prompt therapeutic intervention that will save lives and improve the outcome of these patients. TREC measurement is also applicable in clinical settings where T cell immunity is involved, including any T cell immunodeficiencies, HIV infection, the aging process, autoimmune diseases, and immune reconstitution after bone marrow transplantation.

  13. Objective and automated protocols for the evaluation of biomedical search engines using No Title Evaluation protocols

    Directory of Open Access Journals (Sweden)

    Campagne Fabien

    2008-02-01

    Full Text Available Abstract Background The evaluation of information retrieval techniques has traditionally relied on human judges to determine which documents are relevant to a query and which are not. This protocol is used in the Text Retrieval Evaluation Conference (TREC, organized annually for the past 15 years, to support the unbiased evaluation of novel information retrieval approaches. The TREC Genomics Track has recently been introduced to measure the performance of information retrieval for biomedical applications. Results We describe two protocols for evaluating biomedical information retrieval techniques without human relevance judgments. We call these protocols No Title Evaluation (NT Evaluation. The first protocol measures performance for focused searches, where only one relevant document exists for each query. The second protocol measures performance for queries expected to have potentially many relevant documents per query (high-recall searches. Both protocols take advantage of the clear separation of titles and abstracts found in Medline. We compare the performance obtained with these evaluation protocols to results obtained by reusing the relevance judgments produced in the 2004 and 2005 TREC Genomics Track and observe significant correlations between performance rankings generated by our approach and TREC. Spearman's correlation coefficients in the range of 0.79–0.92 are observed comparing bpref measured with NT Evaluation or with TREC evaluations. For comparison, coefficients in the range 0.86–0.94 can be observed when evaluating the same set of methods with data from two independent TREC Genomics Track evaluations. We discuss the advantages of NT Evaluation over the TRels and the data fusion evaluation protocols introduced recently. Conclusion Our results suggest that the NT Evaluation protocols described here could be used to optimize some search engine parameters before human evaluation. Further research is needed to determine if NT

  14. Comparação a longo prazo entre a facectomia extracapsular combinada à trabeculectomia e à facotrabeculectomia Longterm comparison between extracapsular cataract extraction combined with trabeculectomy and combined phacofiltration surgery

    OpenAIRE

    Carmo Mandia Jr; Niro Kasahara; Francisco Soares Seixas; Maurício Della Paolera; Geraldo Vicente de Almeida; Ralph Cohen

    2002-01-01

    Objetivo: Comparar os resultados a longo prazo entre a cirurgia extracapsular da catarata combinada à trabeculectomia (FEC/TREC) e a facotrabeculectomia (FACO/TREC). Métodos: Os prontuários de 46 pacientes (53 olhos) submetidos à cirurgia combinada na Santa Casa de São Paulo entre janeiro de 1996 e novembro de 1999 foram revisados; dados relativos à pressão ocular (PO), acuidade visual (AV) e número de medicações foram analisados. Resultados: Em ambos os grupos, após seguimento médio de 18 me...

  15. New species and records of Scolytodes (Coleoptera, Curculionidae: Scolytinae) from South America.

    Science.gov (United States)

    Jordal, Bjarte H

    2013-01-01

    Seventeen new species of Scolytodes Ferrari are described from Venezuela, Ecuador, Peru, Bolivia and Argentina: Scolytodes cenchros, S. concavifrons, S. conpunctus, S. fraterniatratus, S. frontocarinatus, S. solarius and S. trigonus from Cecropia leafstalks; S. pascopomus from a fruit husk; S. obovatus, S. clusiaphilus, S. clusiapraelatus and S. uniseriatus from Clusia litter sifting; S. grossepunctatus and S. fulvus from general litter sifting; and S. inusitatus, S. sagittarius and S. sus collected by flight intercept traps. The synonymy of S. imitans and S. nitidissimus is confirmed. Additional South American records are given for S. chapuisi (Ecuador), S. interpunctatus (Peru), S. maurus (Ecuador), and S. suspectus (Ecuador), all taken from Cecropia leafstalks, and S. similis (Peru) and S. unipunctatus (Bolivia). PMID:26120691

  16. Microsatellite Variation in Honey Bee (Apis Mellifera L.) Populations: Hierarchical Genetic Structure and Test of the Infinite Allele and Stepwise Mutation Models

    OpenAIRE

    Estoup, A.; Garnery, L.; Solignac, M.; Cornuet, J. M.

    1995-01-01

    Samples from nine populations belonging to three African (intermissa, scutellata and capensis) and four European (mellifera, ligustica, carnica and cecropia) Apis mellifera subspecies were scored for seven microsatellite loci. A large amount of genetic variation (between seven and 30 alleles per locus) was detected. Average heterozygosity and average number of alleles were significantly higher in African than in European subspecies, in agreement with larger effective population sizes in Afric...

  17. Inducible Resistance of Fish Bacterial Pathogens to the Antimicrobial Peptide Cecropin B▿

    OpenAIRE

    Sallum, Ulysses W.; Chen, Thomas T

    2008-01-01

    Cecropin B is a cationic antimicrobial peptide originally isolated from the diapausing pupae of the giant silk moth, Hylphora cecropia. Cecropin B elicits its antimicrobial effects through disruption of the anionic cell membranes of gram-negative bacteria. Previous work by our laboratory demonstrated that a constitutively expressed cecropin B transgene conferred enhanced resistance to bacterial infection in medaka. The development of antibiotic resistance by pathogenic bacteria is a growing p...

  18. Screening for antimicrobial activity of ten medicinal plants used in Colombian folkloric medicine: A possible alternative in the treatment of non-nosocomial infections

    OpenAIRE

    Ocampo Saul A; Ochoa Veronica J; Rojas Jhon J; Muñoz John F

    2006-01-01

    Abstract Background The antimicrobial activity and Minimal Inhibitory Concentration (MIC) of the extracts of Bidens pilosa L., Bixa orellana L., Cecropia peltata L., Cinchona officinalis L., Gliricidia sepium H.B. & K, Jacaranda mimosifolia D.Don, Justicia secunda Vahl., Piper pulchrum C.DC, P. paniculata L. and Spilanthes americana Hieron were evaluated against five bacteria (Staphylococcus aureus, Streptococcus β hemolític, Bacillus cereus, Pseudomonas aeruginosa, and Escherichia coli), and...

  19. Search for potential angiotensin converting enzyme (ACE)-inhibitors from plants.

    Science.gov (United States)

    Lacaille-Dubois; Franck, U; Wagner, H

    2001-01-01

    MeOH extracts, fractions and pure substances from Musanga cecropioides, Cecropia species and Crataegus oxyacantha /C. monogyna were screened by using an in vitro bio-assay based on the inhibition of Angiotensin Converting Enzyme (ACE), as measured from the enzymatic cleavage of the chromophore-fluorophore-labelled substrate dansyltriglycine into dansylglycine and diglycine. Phenolic acids showed no significant ACE-inhibition whereas flavonoids and proanthocyanidins demonstrated inhibitory activity at 0.33 mg/ml using this test system. PMID:11292239

  20. Biological screening of selected medicinal Panamanian plants by radioligand-binding techniques.

    Science.gov (United States)

    Caballero-George, C; Vanderheyden, P M; Solis, P N; Pieters, L; Shahat, A A; Gupta, M P; Vauquelin, G; Vlietinck, A J

    2001-01-01

    Nineteen plants from the Republic of Panama were selected by their traditional uses in the treatment of hypertension, cardiovascular, mental and feeding disorders and 149 extracts were screened using radioligand-receptor-binding assays. The methanol:dicloromethane extracts of the bark and leaves of Anacardium occidentale L., the leaves of Begonia urophylla Hook., the roots of Bocconia frutescens L., the stems and leaves of Cecropia cf.obtusifolia Bertol., the branches of Clusia coclensis Standl., the bark of Cochlospermum vitifolium (Willd.)Spreng., the roots of Dimerocostus strobilaceus Kuntze, the bark of Guazuma ulmifolia Lam., the leaves of Persea americana Mill. and the branches of Witheringia solanaceae L'Her. inhibited the [3H]-AT II binding (angiotensin II AT1 receptor) more than 50%. Only extracts of the roots of Dimerocostus strobilaceus Kuntze and the stems of Psychotria elata (Sw.) Hammel were potent inhibitors of the [3H] NPY binding (neuropeptide Y Y1 receptor) more than 50% and the ethanolic extracts of the leaves of Cecropia cf. obtusifolia Bertol., the leaves of Hedyosmum bonplandianum H.B.K., the roots of Bocconia frutescens L., the stem of Cecropia cf. obtusifolia Bertol. and the branches of Psychotria elata (Sw.) Hammel showed high inhibition of the [3H] BQ-123 binding (endothelin-1 ET(A) receptor) in a preliminary screening. These results promote the further investigation of these plants using the same assays. PMID:11292241

  1. Data Visualization in Information Retrieval and Data Mining (SIG VIS).

    Science.gov (United States)

    Efthimiadis, Efthimis

    2000-01-01

    Presents abstracts that discuss using data visualization for information retrieval and data mining, including immersive information space and spatial metaphors; spatial data using multi-dimensional matrices with maps; TREC (Text Retrieval Conference) experiments; users' information needs in cartographic information retrieval; and users' relevance…

  2. Natural Language Information Retrieval: Progress Report.

    Science.gov (United States)

    Perez-Carballo, Jose; Strzalkowski, Tomek

    2000-01-01

    Reports on the progress of the natural language information retrieval project, a joint effort led by GE (General Electric) Research, and its evaluation at the sixth TREC (Text Retrieval Conference). Discusses stream-based information retrieval, which uses alternative methods of document indexing; advanced linguistic streams; weighting; and query…

  3. A LANGUAGE MODELING APPROACH TO TURKISH TEXT RETRIEVAL

    OpenAIRE

    Özgür YILMAZEL

    2010-01-01

    We used Lemur Toolkit, an open source toolkit designed for Information Retrieval research, for our automated indexing and retrieval experiments on a TREC-like test collection for Turkish language. We investigate effectiveness of three retrieval models Lemur supports, especially Language modeling approach to Information Retrieval, combined with language specific preprocessing techniques. Our experiments show that language specific preprocessing significantly improves retrieval performance for ...

  4. A Unified Relevance Retrieval Model by Eliteness Hypothesis

    CERN Document Server

    Gorla, Jagadeesh; Wang, Jun

    2011-01-01

    We propose an "Eliteness hypothesis" for information retrieval. Based on the hypothesis, we define two methods to formulate a relevance model and derive a unified probabilistic relevance ranking function. The hypothesis is tested by evaluating a simple ranking function, derived from unified ranking function with some assumptions, on TREC-8 ad-hoc task collection.

  5. Challenging Conventional Assumptions of Automated Information Retrieval with Real Users: Boolean Searching and Batch Retrieval Evaluations.

    Science.gov (United States)

    Hersh, William; Turpin, Andrew; Price, Susan; Kraemer, Dale; Olson, Daniel; Chan, Benjamin; Sacherek, Lynetta

    2001-01-01

    Describes research conducted at the TREC (Text Retrieval Conference) interactive track that compared Boolean and natural language searching, showing they achieved comparable results; and assessed the validity of batch-oriented retrieval evaluations, showing that the results from batch evaluations were not comparable to those obtained in…

  6. The importance of anchor text for ad hoc search revisited

    NARCIS (Netherlands)

    M. Koolen; J. Kamps

    2010-01-01

    It is generally believed that propagated anchor text is very important for effective Web search as offered by the commercial search engines. "Google Bombs" are a notable illustration of this. However, many years of TREC Web retrieval research failed to establish the effectiveness of link evidence fo

  7. Scientific Participation at the Poles: K-12 Teachers in Polar Science for Careers and Classrooms

    Science.gov (United States)

    Crowley, S.; Warburton, J.

    2012-12-01

    PolarTREC (Teachers and Researchers Exploring and Collaborating) is a National Science Foundation (NSF) funded program in which K-12 teachers participate in hands-on field research experiences in the polar regions. PolarTREC highlights the importance of involving teachers in scientific research in regards to their careers as educators and their ability to engage students in the direct experience of science. To date, PolarTREC has placed over 90 teachers with research teams in the Arctic and Antarctic. Published results of our program evaluation quantify the effect of the field experience on the teachers' use of the real scientific process in the classroom, the improvement in science content taught in classrooms, and the use of non-fiction texts (real data and science papers) as primary learning tools for students. Teachers and students both report an increase of STEM literacy in the classroom content, confidence in science education, as well as a markedly broadened outlook of science as essential to their future. Research conducted with science teams affirms that they are achieving broader impacts when PolarTREC teachers are involved in their expeditions. Additionally, they reported that these teachers making vital contributions to the success of the scientific project.

  8. Evaluating Mobile Proactive Context-Aware Retrieval

    DEFF Research Database (Denmark)

    Menegon, Davide; Mizzaro, Stefano; Nazzi, Elena;

    We present the evaluation of a novel application for Web content perusal by means of context-aware mobile devices that proactively query an external search engine. To this aim, we develop a TREC-like benchmark and we use it to evaluate different strategies for automatic query construction on the...

  9. Insights into the impact and use of research results in a residential long-term care facility: a case study

    Directory of Open Access Journals (Sweden)

    Cranley Lisa A

    2012-09-01

    Full Text Available Abstract Background Engaging end-users of research in the process of disseminating findings may increase the relevance of findings and their impact for users. We report findings from a case study that explored how involvement with the Translating Research in Elder Care (TREC study influenced management and staff at one of 36 TREC facilities. We conducted the study at ‘Restwood’ (pseudonym nursing home because the Director of Care engaged actively in the study and TREC data showed that this site differed on some areas from other nursing homes in the province. The aims of the case study were two-fold: to gain a better understanding of how frontline staff engage with the research process, and to gain a better understanding of how to share more detailed research results with management. Methods We developed an Expanded Feedback Report for use during this study. In it, we presented survey results that compared Restwood to the best performing site on all variables and participating sites in the province. Data were collected regarding the Expanded Feedback Report through interviews with management. Data from staff were collected through interviews and observation. We used content analysis to derive themes to describe key aspects related to the study aims. Results We observed the importance of understanding organizational routines and the impact of key events in the facility’s environment. We gleaned additional information that validated findings from prior feedback mechanisms within TREC. Another predominant theme was the sense that the opportunity to engage in a research process was reaffirming for staff (particularly healthcare aides—what they did and said mattered, and TREC provided a means of having one’s voice heard. We gained valuable insight from the Director of Care about how to structure and format more detailed findings to assist with interpretation and use of results. Conclusions Four themes emerged regarding staff engagement with

  10. Partnerships in the Polar Regions: Climate to Classrooms

    Science.gov (United States)

    Warburton, J.; Bartholow, S.

    2013-12-01

    PolarTREC (Teachers and Researchers Exploring and Collaborating) is a program in which K-12 teachers spend 2-6 weeks participating in hands-on field research experiences in the polar regions which focus heavily on climate change and climate science. The goal of PolarTREC is to invigorate polar science education and understanding by bringing K-12 educators and polar researchers together. Through teachers, climate understanding can be shaped for the future by having scientifically literate students entering the workforce. Alone, PolarTREC reaches a myriad of classrooms throughout the country. With new partnerships of the National Park Service and Alaska Geographic, we developed additional field experiences in climate change education for teachers. Campaigns for climate literacy do impact students but are only effective with well-trained, experienced teachers. Our programmatic goal is to expand the opportunities for PolarTREC teachers to share their involvement in science with additional formal and informal educators. 'Teaching the teachers' will reach additional audiences in media, policy, and classrooms. Modeling this program, we designed and conducted teacher trainings on climate science in Denali National Park. Utilizing expert university faculty and park managers in climate science and PolarTREC alumni teachers, the program was touted as 'the best professional opportunity to date". This program gave new teachers the tools to adequately communicate climate science for a generation of scientifically literate students. This presentation will outline the practices used in creating and implementing a climate literacy program for teachers through partnerships that will effectively influence student learning.

  11. Should we feed back research results in the midst of a study?

    Directory of Open Access Journals (Sweden)

    Estabrooks Carole A

    2012-09-01

    Full Text Available Abstract Background This report is an introduction to a series of three research papers that describe the evolution of the approaches taken by the Translating Research in Elder Care (TREC research team during its first four years to feed back the research findings to study participants. TREC is an observational multi-method health services research project underway in 36 nursing homes in the prairie provinces of Canada. TREC has actively involved decision makers from the sector in all stages from initial planning, through data collection to dissemination activities. However, it was not planned as a fully integrated knowledge translation project. These three papers describe our progress towards fully integrated knowledge translation—with respect to timely and requested feedback processes. The first paper reports on the process and outcomes of creating and evaluating the feedback of research findings to healthcare aides (unregulated health professionals. These aides provide over 80% of the direct care in our sample and actively requested the feedback as a condition of their continued cooperation in the data acquisition process. The second paper describes feedback from nursing home administrators on preliminary research findings (a facility annual report and evaluation of the reports’ utility. The third paper discusses an approach to providing a more in-depth form of feedback (expanded feedback report at one of the TREC nursing homes. Findings Survey and interview feedback from healthcare aides is presented in the first paper. Overall, healthcare aides’ opinions about presentation of the feedback report and the understand ability, usability, and usefulness of the content were positive. The second paper describes the use of telephone interviews with facility administrators and indicates that the majority of contextual areas (e.g., staff job satisfaction addressed in facility annual report to be useful, meaningful, and understandable. More than

  12. Plantas de ocorrência espontânea como substratos alternativos para fitoseídeos (Acari, Phytoseiidae em cultivos de seringueira Hevea brasiliensis Muell. Arg. (Euphorbiaceae Weeds as alternative substrates to phytoseiids (Acari, Phytoseiidae in rubber tree Hevea brasilienis, Muell. Arg. (Euphorbiaceae cultivation

    Directory of Open Access Journals (Sweden)

    Marcos Roberto Bellini

    2005-03-01

    Full Text Available O objetivo deste estudo foi determinar as espécies de plantas espontâneas em áreas de cultivo de seringueira que poderiam servir com reservatório de ácaros predadores. O trabalho foi conduzido em Olímpia, Estado de São Paulo, Brasil, em dois cultivos de seringueira. A cada três meses, cerca de 1.000 cm³ de folhas de cada uma das cinco espécies de plantas espontâneas dominantes em cada cultivo foi tomada para determinar os fitoseídeos. Como as plantas espontâneas dominantes variaram durante o estudo, um total de 20 espécies foi verificado. Somente Cecropia sp. foi dominante em todo estudo, em ambos os cultivos. Um total de 336 fitoseídeos pertencentes às seguintes espécies foi encontrado: Euseius citrifolius Denmark & Muma, 1970, E. concordis (Chant, 1959, Galendromus annectens (DeLeon, 1958, Iphiseiodes zuluagai Denmark & Muma, 1972, Neoseiulus anonymus (Chant & Baker, 1965 e N. tunus (DeLeon, 1967. E. citrifolius (189 espécimes e N. tunus (138 espécimes foram os mais abundantes. A maior abundância (231espécimes e diversidade (5 espécies foram observadas sobre Cecropia sp. Sobre esta planta foi encontrado o maior número de ácaros por amostra (29 espécimes, seguida por Piper duncum Linnaeus (22, Guarea sp. (18 e Ageratum conyzoides Linnaeus (12. E. citrifolius tem sido determinado como um dos ácaros predadores mais abundantes sobre seringueiras cultivadas na região onde este trabalho foi conduzido. Cecropia sp. parece ser uma das plantas espontâneas mais importantes consideradas como reservatório de E. citrifolius porque está continuamente presente nos cultivos. Estudos complementares poderiam indicar a viabilidade de se manejar esta planta nas áreas de cultivo de seringueira para permitir o controle biológico dos ácaros-praga desta cultura.The objective of this study was to determine weed species of rubber tree cultivation areas that could serve as reservoirs of predatory mites. The work was conducted in Ol

  13. ORDINAL REGRESSION FOR INFORMATION RETRIEVAL

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    This letter presents a new discriminative model for Information Retrieval (IR), referred to as Ordinal Regression Model (ORM). ORM is different from most existing models in that it views IR as ordinal regression problem (i.e. ranking problem) instead of binary classification. It is noted that the task of IR is to rank documents according to the user information needed, so IR can be viewed as ordinal regression problem. Two parameter learning algorithms for ORM are presented. One is a perceptron-based algorithm. The other is the ranking Support Vector Machine (SVM). The effectiveness of the proposed approach has been evaluated on the task of ad hoc retrieval using three English Text REtrieval Conference (TREC) sets and two Chinese TREC sets. Results show that ORM significantly outperforms the state-of-the-art language model approaches and OKAPI system in all test sets; and it is more appropriate to view IR as ordinal regression other than binary classification.

  14. Probabilistic Aspects in Spoken Document Retrieval

    Directory of Open Access Journals (Sweden)

    Macherey Wolfgang

    2003-01-01

    Full Text Available Accessing information in multimedia databases encompasses a wide range of applications in which spoken document retrieval (SDR plays an important role. In SDR, a set of automatically transcribed speech documents constitutes the files for retrieval, to which a user may address a request in natural language. This paper deals with two probabilistic aspects in SDR. The first part investigates the effect of recognition errors on retrieval performance and inquires the question of why recognition errors have only a little effect on the retrieval performance. In the second part, we present a new probabilistic approach to SDR that is based on interpolations between document representations. Experiments performed on the TREC-7 and TREC-8 SDR task show comparable or even better results for the new proposed method than other advanced heuristic and probabilistic retrieval metrics.

  15. Creative market development : marketing on a shoestring

    International Nuclear Information System (INIS)

    The initiatives that led to the development, construction and financing of Toronto's wind turbine by the Toronto Renewable Energy Co-op (TREC) were outlined in this PowerPoint presentation. The initiative for this first urban-based turbine in North America stemmed from a lack of green power in Ontario's energy market and a strong push from the public for more green power. TREC researched a variety of potential wind tower sites in Toronto and submitted a pre-feasibility report. The construction of the wind turbine involved a joint venture between WindShare and Toronto Hydro Energy Services. The basic principals behind co-operative financing were reviewed along with the challenges of marketing the project

  16. The Messenger Matters: Teacher Research Experiences and Effective, Long-term Science Communication

    Science.gov (United States)

    Timm, K.; Warburton, J.; Larson, A. M.

    2010-12-01

    PolarTREC - Teachers and Researchers Exploring and Collaborating, an NSF-Funded program of the Arctic Research Consortium of the US, matches K-12 teachers with researchers for 2-6 week hands on research experiences in the polar regions. During their teacher research experience, teachers and researchers in the field communicate widely with students and members of the public online through teacher journals, photo galleries, interactive discussion forums, multimedia resources, and real-time live events that connect the science of the Arctic or Antarctic to students and the public around the world. Due to the exciting nature of field-based polar science and the novelty of teacher participation, PolarTREC creates a natural pathway for information—from scientists to students and the general public. Initial data from the PolarTREC evaluation indicates that researchers viewed the dissemination activities of PolarTREC as an essential outreach activity allowing them to meet broader impact objectives of their project. Many researchers noted that conducting outreach through PolarTREC was “easy,” and that it “really increased our public image and bridged the separation between science and the public at large.” Although the immediate outreach activities related to the field experience are valuable, the lasting impacts of PolarTREC are related to the professional development received by the teachers through their participation. Many K-12 teachers, in both undergraduate and graduate education, have little opportunity to actually conduct inquiry-based science. The curriculum at this level consists of primarily memorizing facts and conducting contrived experiments (Michaels et al, 2008). After being embedded in an actual research project with professional scientists, participating teachers reported significant increases in their knowledge of the polar regions and improvements in their ability to teach pertinent science concepts. In particular, teachers had a better

  17. The RATF Formula (Kwok's Formula: Exploiting Average Term Frequency in Cross-Language Retrieval

    Directory of Open Access Journals (Sweden)

    Ari Pirkola

    2002-01-01

    Full Text Available In an earlier study, we presented a query key goodness scheme, which can be used to separate between good and bad query keys. The scheme is based on the relative average term frequency (RATF values of query keys. In the present paper, we tested the effectiveness of the scheme in Finnish to English cross-language retrieval in several experiments. Query keys were weighted and queries were reduced based on the RATF values of keys. The tests were carried out in TREC and CLEF document collections using the InQuery retrieval system. The TREC tests indicated that the best RATF-based queries delivered substantial and statistically significant performance improvements, and performed as well as syn-structured queries shown to be effective in many CLIR studies. The CLEF tests indicated the limitations of the use of RATF in CLIR. However, the best RATF-based queries performed better than baseline queries also in the CLEF collection.

  18. Caterpillars and fungal pathogens: two co-occurring parasites of an ant-plant mutualism.

    Science.gov (United States)

    Roux, Olivier; Céréghino, Régis; Solano, Pascal J; Dejean, Alain

    2011-01-01

    In mutualisms, each interacting species obtains resources from its partner that it would obtain less efficiently if alone, and so derives a net fitness benefit. In exchange for shelter (domatia) and food, mutualistic plant-ants protect their host myrmecophytes from herbivores, encroaching vines and fungal pathogens. Although selective filters enable myrmecophytes to host those ant species most favorable to their fitness, some insects can by-pass these filters, exploiting the rewards supplied whilst providing nothing in return. This is the case in French Guiana for Cecropia obtusa (Cecropiaceae) as Pseudocabima guianalis caterpillars (Lepidoptera, Pyralidae) can colonize saplings before the installation of their mutualistic Azteca ants. The caterpillars shelter in the domatia and feed on food bodies (FBs) whose production increases as a result. They delay colonization by ants by weaving a silk shield above the youngest trichilium, where the FBs are produced, blocking access to them. This probable temporal priority effect also allows female moths to lay new eggs on trees that already shelter caterpillars, and so to occupy the niche longer and exploit Cecropia resources before colonization by ants. However, once incipient ant colonies are able to develop, they prevent further colonization by the caterpillars. Although no higher herbivory rates were noted, these caterpillars are ineffective in protecting their host trees from a pathogenic fungus, Fusarium moniliforme (Deuteromycetes), that develops on the trichilium in the absence of mutualistic ants. Therefore, the Cecropia treelets can be parasitized by two often overlooked species: the caterpillars that shelter in the domatia and feed on FBs, delaying colonization by mutualistic ants, and the fungal pathogen that develops on old trichilia. The cost of greater FB production plus the presence of the pathogenic fungus likely affect tree growth. PMID:21655182

  19. Caterpillars and fungal pathogens: two co-occurring parasites of an ant-plant mutualism.

    Directory of Open Access Journals (Sweden)

    Olivier Roux

    Full Text Available In mutualisms, each interacting species obtains resources from its partner that it would obtain less efficiently if alone, and so derives a net fitness benefit. In exchange for shelter (domatia and food, mutualistic plant-ants protect their host myrmecophytes from herbivores, encroaching vines and fungal pathogens. Although selective filters enable myrmecophytes to host those ant species most favorable to their fitness, some insects can by-pass these filters, exploiting the rewards supplied whilst providing nothing in return. This is the case in French Guiana for Cecropia obtusa (Cecropiaceae as Pseudocabima guianalis caterpillars (Lepidoptera, Pyralidae can colonize saplings before the installation of their mutualistic Azteca ants. The caterpillars shelter in the domatia and feed on food bodies (FBs whose production increases as a result. They delay colonization by ants by weaving a silk shield above the youngest trichilium, where the FBs are produced, blocking access to them. This probable temporal priority effect also allows female moths to lay new eggs on trees that already shelter caterpillars, and so to occupy the niche longer and exploit Cecropia resources before colonization by ants. However, once incipient ant colonies are able to develop, they prevent further colonization by the caterpillars. Although no higher herbivory rates were noted, these caterpillars are ineffective in protecting their host trees from a pathogenic fungus, Fusarium moniliforme (Deuteromycetes, that develops on the trichilium in the absence of mutualistic ants. Therefore, the Cecropia treelets can be parasitized by two often overlooked species: the caterpillars that shelter in the domatia and feed on FBs, delaying colonization by mutualistic ants, and the fungal pathogen that develops on old trichilia. The cost of greater FB production plus the presence of the pathogenic fungus likely affect tree growth.

  20. The MediaMill TRECVID 2006 semantic video search engine

    OpenAIRE

    Snoek, C.G.M.; van Gemert, J. C.; Gevers, T; Huurnink, B; Koelma, D.C.; Liempt, M; Rooij, O; Sande, K.E.A. van de; Seinstra, F.J.; Smeulders, A.W.M.; Thean, A.H.C.; Veenman, C.J.; Worring, M.

    2006-01-01

    In this paper we describe our TRECVID 2006 experiments. The MediaMill team participated in two tasks: concept detection and search. For concept detection we use the MediaMill Challenge as experimental platform. The MediaMill Challenge divides the generic video indexing problem into a visual-only, textual-only, early fusion, late fusion, and combined analysis experiment. We provide a baseline implementation for each experiment together with baseline results, which we made available to the TREC...

  1. Introduction to the Text Retrieval Conference%文本检索会议简介

    Institute of Scientific and Technical Information of China (English)

    吴立德; 黄萱菁

    2002-01-01

    Text Retrieval Conference (TREC), which is sponsored by the National Institute of Standards and Tech-nology as well as the Defense Advanced Research Projects Agency, is the most authoritative international evaluationconference about text retrieval. This paper describes the Ninth Text Retrieval Conference held in 2000 and its fourmain tracks, which are Question Answering, Web Retrieval, Cross Language Information Retrieval and Text Filter-ing, from the aspects of test topics, corpus, evaluation metrics and results.

  2. Image Information Retrieval: An Overview of Current Research

    OpenAIRE

    Goodrum, Abby A.

    2000-01-01

    This paper provides an overview of current research in image information retrieval and provides an outline of areas for future research. The approach is broad and interdisciplinary and focuses on three aspects of image research (IR): text-based retrieval, content-based retrieval, and user interactions with image information retrieval systems. The review concludes with a call for image retrieval evaluation studies similar to TREC.

  3. Turkish Text Retrieval Experiments Using Lemur Toolkit

    OpenAIRE

    Yılmaz, Kutlu Emre; Arslan, Ahmet; Yilmazel, Ozgur

    2014-01-01

    We used Lemur Toolkit, an open source toolkit designed for Information Retrieval (IR) research, for our automated indexing and retrieval experiments on a TREC-like test collection for Turkish. We study and compare three retrieval models Lemur supports, especially Language modeling approach to IR, combined with language specific preprocessing techniques. Our experiments show that all retrieval models benefits from language specific preprocessing in terms of retrieval quality. Also Language Mod...

  4. To the Extremes! A Teacher Research Experience Program in the Polar Regions

    Science.gov (United States)

    Warburton, J.; Bartholow, S.

    2014-12-01

    PolarTREC-Teachers and Researchers Exploring and Collaborating, a teacher professional development program, began with the International Polar Year in 2004 and continues today in the United States. In 2007, the National Science Foundation designated PolarTREC as potentially transformative, meaning that the "research results often do not fit within established models or theories and may initially be unexpected or difficult to interpret; their transformative nature and utility might not be recognized until years later." PolarTREC brings U.S. K-12 educators and polar researchers together through an innovative teacher research experience model. Teachers spend three to six weeks in remote arctic and Antarctic field camps. Since 2007, over 100 teachers have been placed in field experiences throughout the Arctic and Antarctic and with half of them participating in field experiences in Antarctica. During their experience, teachers become research team members filling a variety of roles on the team. They also fulfil a unique role of public outreach officer, conducting live presentations about their field site and research as well as journaling, answering questions, and posting photos. Evaluation data collected over the past eight years on program participants shows that PolarTREC has clearly achieved it goals and strongly suggests programs that link teachers and researchers can have the potential to transform the nature of science education. By giving teachers the content knowledge, pedagogical tools, confidence, understanding of science in the broader society, and experiences with scientific inquiry, participating teachers are using authentic scientific research in their classrooms. Not surprisingly this has also led to increases in student interest and knowledge about the Polar Regions. In this presentation, we will highlight the best practices of teacher research experiences as well as discuss why it is vital to have teachers and researchers work together to communicate

  5. T-cell receptor and K-deleting recombination excision circles in newborn screening of T- and B-cell defects: review of the literature and future challenges

    Directory of Open Access Journals (Sweden)

    Marco Chiarini

    2013-05-01

    Full Text Available Since its introduction as a public health programme in the United States in the early 1960s, newborn blood screening (NBS has evolved from the detection of phenylalanine levels on filter paper to the application of DNA-based technologies to identify T-cell lymphopenia in infants with severe combined immunodeficiency. This latter use of NBS has required the development of an assay for T-cell lymphopenia based on the quantification of T-cell receptor excision circles (TRECs that could be performed on dried blood spots routinely collected from newborn infants. The TREC-based NBS was developed six years ago, and there have already been 7 successful pilot studies since then. Similarly, efforts are now being made to establish a screen for B-cell defects, in particular agammaglobulinaemia, taking advantage of the introduction of the method for the quantification of K-deleting recombination excision circles (KRECs. A further achievement of NBS could be the simultaneous recognition of T- and B-cell defects using the combined quantification of TRECs and KRECs from Guthrie card blood spots. This approach may help the early identification of infants with T- and B-cell deficiencies so that they can then be referred to specialised paediatric centres, where a precise diagnosis of severe combined immunodeficiency and agammaglobulinaemia can be performed, and where then they can immediately receive specific therapy. Simultaneous TREC and KREC quantification should also allow classification of patients into subgroups and help identify children with less serious primary immunodeficiencies. This would help avoid the opportunistic infections and frequent hospitalisations that result from a late or lack of diagnosis.

  6. Collection Selection with Highly Discriminative Keys

    OpenAIRE

    Bockting, S.; Hiemstra, D.

    2009-01-01

    The centralized web search paradigm introduces several problems, such as large data traffic requirements for crawling, index freshness problems and problems to index everything. In this study, we look at collection selection using highly discriminative keys and query-driven indexing as part of a distributed web search system. The approach is evaluated on different splits of the TREC WT10g corpus. Experimental results show that the approach outperforms a Dirichlet smoothing language modeling a...

  7. Passage retrieval for question answering using sliding windows

    OpenAIRE

    Khalid, M.A.; Verberne, S.

    2008-01-01

    The information retrieval (IR) community has investigated many different techniques to retrieve passages from large collections of documents for question answering (QA). In this paper, we specifically examine and quantitatively compare the impact of passage retrieval for QA using sliding windows and disjoint windows. We consider two different data sets, the TREC 2002-2003 QA data set, and 93 whyquestions against INEX Wikipedia. We discovered that, compared to disjoint windows, using sliding w...

  8. Driver and Pedestrian Behavior at Uncontrolled Crosswalks in the Tahoe Basin Recreation Area

    OpenAIRE

    Mitman, Meghan Fehlig; Cooper, Douglas; DuBose, Brooke

    2010-01-01

    For more than thirty years, pedestrian safety studies have considered pedestrian-vehicle collision patterns and pedestrian and driver behavior at marked and unmarked crosswalks at uncontrolled crossings. Recent research in this area conducted by the UC Berkeley Traffic Safety Center [aka SafeTREC] on behalf of Caltrans, and summarized in a 2008 Transportation Research Record paper by Mitman et al., “The Marked Crosswalk Dilemma: Uncovering Some Missing Links in a 35-Year Debate,” was designed...

  9. Integrating the Probabilistic Models BM25/BM25F into Lucene

    CERN Document Server

    Pérez-Iglesias, Joaquín; Fresno, Víctor; Feinstein, Yuval Z

    2009-01-01

    This document describes the BM25 and BM25F implementation using the Lucene Java Framework. Both models have stood out at TREC by their performance and are considered as state-of-the-art in the IR community. BM25 is applied to `ad-hoc' retrieval, that is for documents that do not contain fields, on the other hand BM25F is applied to documents with structure.

  10. Understanding the 8 μm versus Paα Relationship on Subarcsecond Scales in Luminous Infrared Galaxies

    OpenAIRE

    Díaz-Santos, Tanio; Alonso-Herrero, A.; Colina, Luis; Packham, Christopher; Radomski, James T.; Telesco, Charles M.

    2008-01-01

    14 pages, 9 figures, 4 tables.-- Based on observations obtained with T-ReCS instrument at the Gemini South Observatory, which is operated by the Association of Universities for Research in Astronomy (AURA), Inc., under a cooperative agreement with the NSF on behalf of the Gemini partnership: NSF (United States), PPARC (UK), NRC (Canada), CONICYT (Chile) ARC (Australia), CNPq (Brazil), and CONICET (Argentina).-- Also based on observations with the NASA/ESA Hubble Space Telescope, obtained from...

  11. Evaluating Relevance Ranking Strategies for MEDLINE Retrieval

    OpenAIRE

    Lu, Zhiyong; Kim, Won; Wilbur, W. John

    2009-01-01

    This paper evaluates the retrieval effectiveness of relevance ranking strategies on a collection of 55 queries and about 160,000 MEDLINE® citations used in the 2006 and 2007 Text Retrieval Conference (TREC) Genomics Tracks. The authors study two relevance ranking strategies: term frequency–inverse document frequency (TF-IDF) weighting and sentence-level co-occurrence, and examine their ability to rank retrieved MEDLINE documents given user queries. Furthermore, the authors use the reverse chr...

  12. Search Engines Comparison on the Basis of Session Duration and Click Hits

    Directory of Open Access Journals (Sweden)

    Rajesh Kumar Goutam

    2011-03-01

    Full Text Available The evaluation of search engines has greatly diversified in recent years. Evaluation campaigns are required to continuously re-consider their tasks and updating evaluation function in order to satisfy the users. We presented two user action dependent approaches to rank the results, namely Session duration time and Click Hits. Furthermore, we have conducted an experiment with 25 TREC queries to do comparison of five popular search engines.

  13. Search Engines Comparison on the Basis of Session Duration and Click Hits

    OpenAIRE

    Rajesh Kumar Goutam; Sanjay Kumar Dwivedi

    2011-01-01

    The evaluation of search engines has greatly diversified in recent years. Evaluation campaigns are required to continuously re-consider their tasks and updating evaluation function in order to satisfy the users. We presented two user action dependent approaches to rank the results, namely Session duration time and Click Hits. Furthermore, we have conducted an experiment with 25 TREC queries to do comparison of five popular search engines.

  14. Better contextual suggestions in ClueWeb12 using domain knowledge inferred from the open web

    OpenAIRE

    Samar, Thaer; Bellogín, Alejandro; de Vries, Arjen P.

    2014-01-01

    This paper provides an overview of our participation in the Contextual Suggestion Track. The TREC 2014 Contextual Suggestion Track allowed participants to submit personalized rankings using documents either from the OpenWeb or from an archived, static Web collection, the ClueWeb12 dataset. In this paper, we focus on filtering the entire ClueWeb12 collection to exploit domain knowledge from touristic sites available in the Open Web. We show that the generated recommendations ...

  15. CLEF - Cross Language Evaluation Form

    OpenAIRE

    Peters, Carol

    2000-01-01

    A Cross-Language Evaluation Forum (CLEF), an important initiative for the evaluation of multilingual information retrieval systems, is now being launched in Europe. The activity will be sponsored by the DELOS Network of Excellence for Digital Libraries and funded by the Information Societies Technology programme of the European Commission. It will be conducted in collaboration with the US National Institute of Standards and Technology (NIST) and the TREC conference series. We present the agen...

  16. The CLEF campaign

    OpenAIRE

    Braschler, M.; Peters, P.

    2001-01-01

    The Cross-Language Evaluation Forum (CLEF) provides an infrastructure aimed at supporting the development, testing and evaluation systems for cross-language information retrieval, and for monolingual information retrieval of European Languages other than English. Originally started as a track at the TREC-6 conference, CLEF became an independent initiative in 2000 when the coordination moved to Europe. The diversity of languages commonly spoken in Europe has led to a multilingual distributed s...

  17. MapReduce for Experimental Search

    OpenAIRE

    Hiemstra, Djoerd; Hauff, Claudia; Voorhees, E.M.; Buckland, L.P.

    2011-01-01

    This report presents preliminary results for the TREC 2010 ad-hoc web search task. We ran our MIREX system on 0.5 billion web documents from the ClueWeb09 crawl. On average, the system retrieves at least 3 relevant documents on the first result page containing 10 results, using a simple index consisting of anchor texts, page titles, and spam removal.

  18. A study of the Dirichlet Priors for term frequency normalisation

    OpenAIRE

    He, B; Ounis, I.

    2005-01-01

    In Information Retrieval (IR), the Dirichlet Priors have been applied to the smoothing technique of the language modeling approach. In this paper, we apply the Dirichlet Priors to the term frequency normalisation of the classical BM25 probabilistic model and the Divergence from Randomness PL2 model. The contributions of this paper are twofold. First, through extensive experiments on four TREC collections, we show that the newly generated models, to which the Dirichlet Priors normalisation is ...

  19. Palynological reconstruction of the rain forest in French Guiana during the past 3000 years

    International Nuclear Information System (INIS)

    Pollen analysis has been carried out on a core drilled in a peaty palm swamp forest in the rain forest of French Guiana. This has brought new data on the variations of the forest cover during the past 3000 years. Momentary peaks of the pioneer species Cecropia frequency give evidence of two phases of relatively open vegetation: on between 2124 - 1679 and 1525 - 1375 calibrated years B.P. and another shorter one around 658-424 yrs B.P. cal. The first one appears to be due to the combined incidence of a dry climatic period and of forest fires of human origins. (authors)

  20. Palynological reconstruction of the rain forest in French Guiana during the past 3000 years; Reconstitution palynologique de la foret guyanaise au cours des 3000 dernieres annees

    Energy Technology Data Exchange (ETDEWEB)

    Ledru, M.P.; Fournier, M.; Martin, L. [ORSTOM, 93 - Bondy (France); Charles-Dominique, P.; Riera, B. [Laboratoire d`ecologie generale, URA, CNRS, 91 - Brunoy (France); Tardy, Ch. [Laboratoire de paleobotanique, URA, CNRS, Institut de botanique 34 - Montpellier (France)

    1997-03-01

    Pollen analysis has been carried out on a core drilled in a peaty palm swamp forest in the rain forest of French Guiana. This has brought new data on the variations of the forest cover during the past 3000 years. Momentary peaks of the pioneer species Cecropia frequency give evidence of two phases of relatively open vegetation: on between 2124 - 1679 and 1525 - 1375 calibrated years B.P. and another shorter one around 658-424 yrs B.P. cal. The first one appears to be due to the combined incidence of a dry climatic period and of forest fires of human origins. (authors). 13 refs.

  1. Atomic force microscopy-based antibody recognition imaging of proteins in the pathological deposits in Pseudoexfoliation Syndrome

    International Nuclear Information System (INIS)

    The phenomenon of protein aggregation is of considerable interest to various disciplines, including the field of medicine. A range of disease pathologies are associated with this phenomenon. One of the ocular diseases hallmarked by protein aggregation is the Pseudoexfoliation (PEX) Syndrome. This condition is characterized by the deposition of insoluble proteinaceous material on the anterior human lens capsule. Genomic and proteomic analyses have revealed an association of specific genetic markers and various proteins, respectively, with PEX syndrome. However, the ultrastructure of the protein aggregates is poorly characterized. This study seeks to build capacity to determine the molecular nature of PEX aggregates on human lens capsules in their native state by AFM-based antibody recognition imaging. Lysyl oxidase-Like 1 (LOXL1), a protein identified as a component of PEX aggregates, is detected by an antibody-modified AFM probe. Topographical AFM images and antibody recognition images are obtained using three AFM-based techniques: TREC, phase and force-volume imaging. LOXL1 is found to be present on the lens capsule surface, and is localized around fibrous protein aggregates. Our evaluation shows that TREC imaging is best suited for human tissue imaging and holds significant potential for imaging of human disease tissues in their native state. -- Highlights: → Atomic force microscopy techniques were applied to diseased human tissues. → LOXL1 protein was detected on the small fibers of Pseudoexfoliation deposits. → PicoTREC was the optimum technique for investigating protein aggregates.

  2. T CELL REPERTOIRE COMPLEXITY IN SEVER COMBINED IMMUNODEFICIENCY PATIENTS AFTER BONE MARROW TRANSPLANTATION

    Institute of Scientific and Technical Information of China (English)

    曹水; 李晓静

    2003-01-01

    Objective. To study thymus-dependent T cell development and T cell repertoire in human sever combined immunodeficiency (SCID) patients after HLA-identical or haploidentical T cell-depleted allogeneic bone marrow transplantation (BMT). Methods. Blood samples were obtained from 15 SCID patients before transplantation and at varying intervals thereafter. Quantitative competitive PCR assay and immunoscope analysis of the T cell receptor (TCR) Vβ repertoire were performed. Results. Before and within the first 100 days after transplantation, patients' peripheral blood mononuclear cell (PBMC) presented an oligoclonal or polyclonal skewed T cell repertoire, low T cell receptor excision circles (TRECs) values and predominance of CD45RO+ T cell. In contrast, the presence of high numbers of CD45RA+ T cells in bone marrow(BM) circulation reconstituted SCID patients (>100 days post-transplantation) correlated with active T cell production by the thymus as revealed by high TREC values, and a polyclonal T cell repertoire demonstrated by a Gaussian distribution of Vβ-specific peaks. Conclusions. Within one year after BMT, a normal T cell repertoire develops in SCID patients as a result of thymic output. The T cell receptor diversity is highly and positively correlated in these patients with TREC levels.

  3. Low thymic output in the 22q11.2 deletion syndrome measured by CCR9+CD45RA+ T cell counts and T cell receptor rearrangement excision circles

    DEFF Research Database (Denmark)

    Lima, K; Abrahamsen, Gitte Meldgaard; Foelling, I;

    2010-01-01

    -expression of CD3, CD45RA and CCR9 (r=0.84) as well as with the CD4+ and CD8+ T cell subtypes. RTE-related T cell counts also paralleled age-related TREC reductions. CD45RA+ T cells correlated well with absolute counts of CD4+ (r=0.87) and CD8+ (r=0.75) RTE-related T cells. Apart from CD45RA- T cells, all T......Thymic hypoplasia is a frequent feature of the 22q11.2 deletion syndrome, but we know little about patients' age-related thymic output and long-term consequences for their immune system. We measured the expression of T cell receptor rearrangement excision circles (TREC) and used flow cytometry for...... direct subtyping of recent thymic emigrant (RTE)-related T cells in 43 patients (aged 1-54 years; median 9 years) from all over Norway and in age-matched healthy controls. Thymic volumes were estimated by ultrasound in patients. TREC levels correlated well with RTE-related T cells defined by co...

  4. Improved localization of cellular membrane receptors using combined fluorescence microscopy and simultaneous topography and recognition imaging

    Energy Technology Data Exchange (ETDEWEB)

    Duman, M; Pfleger, M; Chtcheglova, L A; Neundlinger, I; Bozna, B L; Ebner, A; Schuetz, G J; Hinterdorfer, P [Institute for Biophysics, University of Linz, Altenbergerstrasse 69, A-4040 Linz (Austria); Zhu, R; Mayer, B [Christian Doppler Laboratory for Nanoscopic Methods in Biophysics, Institute for Biophysics, University of Linz, Altenbergerstrasse 69, A-4040 Linz (Austria); Rankl, C; Moertelmaier, M; Kada, G; Kienberger, F [Agilent Technologies Austria GmbH, Aubrunnerweg 11, A-4040 Linz (Austria); Salio, M; Shepherd, D; Polzella, P; Cerundolo, V [Cancer Research UK Tumor Immunology Group, Weatherall Institute of Molecular Medicine, Nuffield Department of Medicine, University of Oxford, Oxford OX3 9DS (United Kingdom); Dieudonne, M, E-mail: ferry_kienberger@agilent.com [Agilent Technologies Belgium, Wingepark 51, Rotselaar, AN B-3110 (Belgium)

    2010-03-19

    The combination of fluorescence microscopy and atomic force microscopy has a great potential in single-molecule-detection applications, overcoming many of the limitations coming from each individual technique. Here we present a new platform of combined fluorescence and simultaneous topography and recognition imaging (TREC) for improved localization of cellular receptors. Green fluorescent protein (GFP) labeled human sodium-glucose cotransporter (hSGLT1) expressed Chinese Hamster Ovary (CHO) cells and endothelial cells (MyEnd) from mouse myocardium stained with phalloidin-rhodamine were used as cell systems to study AFM topography and fluorescence microscopy on the same surface area. Topographical AFM images revealed membrane features such as lamellipodia, cytoskeleton fibers, F-actin filaments and small globular structures with heights ranging from 20 to 30 nm. Combined fluorescence and TREC imaging was applied to detect density, distribution and localization of YFP-labeled CD1d molecules on {alpha}-galactosylceramide ({alpha}GalCer)-loaded THP1 cells. While the expression level, distribution and localization of CD1d molecules on THP1 cells were detected with fluorescence microscopy, the nanoscale distribution of binding sites was investigated with molecular recognition imaging by using a chemically modified AFM tip. Using TREC on the inverted light microscope, the recognition sites of cell receptors were detected in recognition images with domain sizes ranging from {approx} 25 to {approx} 160 nm, with the smaller domains corresponding to a single CD1d molecule.

  5. Creating a 21st Century Community through the Teacher Research Experience (Invited)

    Science.gov (United States)

    Wilkening, E.; Beine, H. J.

    2009-12-01

    In the spring of 2009, I participated in PolarTREC - Teachers and Researchers Exploring and Collaborating, a Teacher Research Experience (TRE) funded by the National Science Foundation and managed by the Arctic Research Consortium of the United States. I assisted in hands-on research being performed by scientists with OASIS (Ocean, Atmosphere, Sea Ice and Snowpack) during their field campaign in Barrow, Alaska. Although I was in the field for only 3 weeks, it was merely a beginning to a transformation that took place not only in me, but also among all of those involved. The PolarTREC program embodies the principles fundamental to the 21st Century skill-set that we want our students to possess. The job market is changing for graduates, and education is striving to provide students with the skills necessary to thrive in the future. To ensure the success of students the International Society for Technology Education (ISTE) has defined 21st Century Skills. They are incorporated into many educational standards (such as the Arizona Educational Technology Standards) and they are practiced by the teachers, researchers, students and the PolarTREC community. They are: Creativity and Innovation Communication and Collaboration Research and Information Literacy Critical Thinking, Problem Solving, and Decision Making Digital Citizenship Technology Operations and Concepts

  6. Reeducación cognitiva - emotiva en caso de ansiedad ante los exámenes

    Directory of Open Access Journals (Sweden)

    René Pedroza Flores

    2015-05-01

    Full Text Available La prevalencia de la ansiedad en los estudiantes universitarios va en aumento, esto debido a diversos factores familiares, sociales, culturales y de desempeño académico. Cada vez son más los casos reportados con trastorno de ansiedad ante los exámenes. Existen diversos estudios en el campo de la psicología que se han realizado, aportando test y constructos explicativos. En este artículo nos proponemos abordar la ansiedad ante los exámenes a través de un caso desde el enfoque de la Terapia Racional-Emotiva Conductual (TREC de Albert Ellis. Primero, mostramos la relación que existe entre fracaso escolar y ansiedad; segundo, describimos cómo la TREC conceptualiza el trastorno de ansiedad; y tercero, ofrecemos un estudio de caso, desde el diagnóstico hasta el modelo de intervención;concluyendo con dimensionar la efectividad de la TREC en el tratamiento de la ansiedad ante los exámenes.

  7. Elevated proportions of recent thymic emigrants in children and adolescents with type 1 diabetes.

    Science.gov (United States)

    Hofer, Johannes; Hofer, Sabine; Zlamy, Manuela; Jeller, Verena; Koppelstaetter, Christian; Brandstätter, Anita; Kern, Hannelore; Köhle, Julia; Zimmerhackl, Lothar Bernd; Prelog, Martina

    2009-10-01

    It is unclear, whether pediatric patients with type 1 diabetes (T1DM) show immunological alterations typically found in autoimmune conditions resembling immune dysfunction of the thymus, such as decrease of naïve T cells, lower T cell receptor excision circle (TREC) numbers, telomeric erosion, and diminished interleukin-7 (IL-7) levels. Furthermore, it is unknown, whether long-term therapy with insulin, a thymic growth factor, interferes with these changes. Therefore, the aim of this study was to analyze the quantity of the naïve T cell subset and its TREC content, relative telomere length (RTL) of naïve T cells, and peripheral IL-7 levels in patients with recent-onset T1DM (n = 5), long-standing T1DM (n = 33), and age-matched healthy donors (HD) (n = 37). In long-standing T1DM, TREC numbers/CD8+CD45RA+ T cells were enhanced (p RTLs in CD8+CD45RA+ T cells were significantly increased compared to HD (p < 0.02). Our data suggest that longterm insulin therapy may serve as a driving factor for thymic function and rejuvenation of the naïve T cell compartment. The ability of the immune system to reconstitute the naïve T cell compartment under well-adjusted insulin therapy may be of major importance for recognition of new antigens, response to vaccinations, and defense of infectious complications. PMID:19725773

  8. Revolutionizing Climate Science: Using Teachers as Communicators

    Science.gov (United States)

    Warburton, J.; Crowley, S.; Wood, J.

    2012-12-01

    PolarTREC (Teachers and Researchers Exploring and Collaborating) is a National Science Foundation (NSF) funded program in which K-12 teachers participate in hands-on field research experiences in the Polar Regions. Teachers are the dynamic conduits for communicating climate science. In the PolarTREC final report, researchers found that teachers were vital in refining the language of their science and have shaped the goals of the scientific project. Program data demonstrates that science in classrooms is better understood when teachers have a full-spectrum grasp of project intricacies from defining the project, to field data collection, encountering situations for creativity and critical thinking, as well as participating in data and project analysis. Teachers' translating the authentic scientific process is integral in communicating climate science to the broader public. Teachers playing a major role in polar science revolutionize the old paradigm of "in-school learning". Through daily online journaling and forums, social media communication, live webinars with public, and professional development events, these teachers are moving beyond classrooms to communicate with society. Through teachers, climate policy can be shaped for the future by having scientifically literate students as well as assessable science. New paradigms come as teachers attain proficient levels of scientific understanding paired with the expert abilities for communication with years of experience. PolarTREC teachers are a model for new interactions peer-to-peer learning and mentorship for young scientists. Our programmatic goal is to expand the opportunities for PolarTREC teachers to share their involvement in science with additional formal and informal educators. 'Teaching the teachers' will reach exponential audiences in media, policy, and classrooms. Modeling this program, we designed and conducted a teacher training on climate science in Denali National Park. Utilizing expert university

  9. Walk the Talk: Teachers as Leaders in Climate Change Education

    Science.gov (United States)

    Warburton, J.; Bartholow, S.; Larson, A.

    2014-12-01

    The notion of teachers as leaders and communicators is not new but rather it has been limited in scope. Teachers have long served as team leaders, department chairs, and curriculum developers. But what happens when you go beyond these typical roles in professional development? Can teachers become lead communicators beyond the classroom? Can they become leaders of change on important topics like the climate? For nearly a decade, PolarTREC (Teachers and Researchers Exploring and Collaborating), funded by the National Science Foundation, has been teaming teachers with research projects in all fields of polar science. Teachers participate in hands-on field research experiences in the polar regions which focus heavily on climate change and climate science. Administrated by the Arctic Research Consortium of the United States, the goal of PolarTREC is to invigorate polar science education and understanding by bringing K-12 educators and polar researchers together. The program fosters a teacher and researcher network, which accelerates the cross-pollination of knowledge in science practices, findings, and classroom implementation throughout disciplines. Evaluation data exposes a crucial dynamic that increases the potential for a successful climate change science campaign. Data indicates that teachers can tackle challenges such as reframing climate change science to better address the need for a particular campaign, as well as garnering the science project the necessary support through effective, authentic, and tangible communication efforts to policymakers, funders, students, and the public. Researchers reported the value of explaining their science, in-situ, allowed them to reframe and rework the objectives of the science project to attain meaningful outcomes. More than half of the researchers specifically noted that one of the strengths of the PolarTREC project is its benefit to the scientific process. The researchers also viewed PolarTREC as an essential outreach

  10. Long-range correlations in rectal temperature fluctuations of healthy infants during maturation.

    Directory of Open Access Journals (Sweden)

    Georgette Stern

    Full Text Available BACKGROUND: Control of breathing, heart rate, and body temperature are interdependent in infants, where instabilities in thermoregulation can contribute to apneas or even life-threatening events. Identifying abnormalities in thermoregulation is particularly important in the first 6 months of life, where autonomic regulation undergoes critical development. Fluctuations in body temperature have been shown to be sensitive to maturational stage as well as system failure in critically ill patients. We thus aimed to investigate the existence of fractal-like long-range correlations, indicative of temperature control, in night time rectal temperature (T(rec patterns in maturing infants. METHODOLOGY/PRINCIPAL FINDINGS: We measured T(rec fluctuations in infants every 4 weeks from 4 to 20 weeks of age and before and after immunization. Long-range correlations in the temperature series were quantified by the correlation exponent, alpha using detrended fluctuation analysis. The effects of maturation, room temperature, and immunization on the strength of correlation were investigated. We found that T(rec fluctuations exhibit fractal long-range correlations with a mean (SD alpha of 1.51 (0.11, indicating that T(rec is regulated in a highly correlated and hence deterministic manner. A significant increase in alpha with age from 1.42 (0.07 at 4 weeks to 1.58 (0.04 at 20 weeks reflects a change in long-range correlation behavior with maturation towards a smoother and more deterministic temperature regulation, potentially due to the decrease in surface area to body weight ratio in the maturing infant. alpha was not associated with mean room temperature or influenced by immunization CONCLUSIONS: This study shows that the quantification of long-range correlations using alpha derived from detrended fluctuation analysis is an observer-independent tool which can distinguish developmental stages of night time T(rec pattern in young infants, reflective of maturation of

  11. New magnetic fluid developed with natural organic compounds biocompatible.

    Science.gov (United States)

    Santos, J G; Silveira, L B; Fegueredo, P H S; Araújo, B F; Peternele, W S; Rodriguez, A F R; Vilela, E C; Garg, V K; Oliveira, A C; Azevedo, R B; Morais, P C

    2012-06-01

    This work was developed with an aqueous suspension of maghemite nanoparticles and colloidal emulsions with nanoparticles of magnetite. The nanoparticles were synthesized by co-precipitation method. The first was the magnetic emulsion nanoparticles of maghemite dispersed in the aqueous extract obtained from the leaf embauba (Cecropia Obtusifolia), whose tree is native to Central and South America. Thereby achieving the magnetic fluid extract embauba stabilized with ionic buffer solution pH 7.4. A second emulsion was prepared with colloidal magnetite nanoparticles with surfaces previously coated with oleic acid as a means of dispersing and using the oil extracted from in nature seed Andiroba (Carapa Guianensis), tree of the Brazilian Amazon. These new magnetic fluids the nanoparticles were characterized by Photoacoustic spectroscopy (PAS) to determine the coating layer of molecules on the surfaces of nanoparticles. In aqueous ionic magnetic fluid Cecropia Obtusifolia (MFCO) chlorogenic acid contributes to the electron density in the presence of four groups alcohols, a ketone group and a carboxylic group. In magnetic fluid-based oil andiroba MFAD PAS spectra show that oleic acid molecules are tightly linked on the surface of the nanoparticles. PMID:22905527

  12. AcEST: BP913269 [AcEST

    Lifescience Database Archive (English)

    Full Text Available ana ... 35 1.9 tr|B2WS76|B2WS76_ARAHA High mobility group HMG1/2 family protein... 35 2.4 tr|B8F2H1|B...K---QVYN 429 Query: 31 GK 26 GK Sbjct: 430 GK 431 >tr|B2WS76|B2WS76_ARAHA High mobility group HMG1/2 family protein OS=Arabi...s producing significant alignments: (bits) Value sp|P25033|HEMO_HYACE Hemolin OS=Hyalophora cecropia PE=1 SV... 430 >tr|Q4H1G8|Q4H1G8_SAMCR Hemolin OS=Samia cynthia ricini PE=2 SV=1 Length = 413 Score = 36.6 bits (83), Expect = 0.64 Identit...6.9) Link to BlastX Result : Swiss-Prot sp_hit_id P25033 Definition sp|P25033|HEMO_HYACE Hemolin OS=Hyalophora cecropia Ali

  13. Rizosferas de árvores acumuladoras de fósforo na Amazonia Brasileira

    Directory of Open Access Journals (Sweden)

    Patrícia Chaves de Oliveira

    2011-08-01

    Full Text Available Rhizosphere of tress that accumulate phosphorus in the Brazilian Amazon. Objective. With the purpose of knowing the strategiesof tolerance of two phosphorus-accumulating species (Neea macrophylla and Cecropia palmate and a non-accumulating species(Casearia arborea to phosphorus-deficient soils, we characterized the rhizosphere of these species using a multivariate analysis andcorrelation matrices in relation to the concentrations of organic phosphorus, available phosphorus, soil organic carbon, organic carbonfrom microbial biomass, acid phosphatase enzyme activity, and root infection by mycorrhizal fungi. Materials and methods. Theresearch was carried out in the Igarapé-Açú town, state of Pará, Brazil in secondary forests with five years of regeneration, where theparameters above mentioned were monitored. Results. Results did not reveal significant differences between the species depending onthe characteristics of the soil next to the rhizospheres, suggesting homogeneous conditions. The enzymatic activity was slightly higherin the species with less potential in accumulating P (Casearia arborea suggesting that efficiency in P use is not determined by theenzymatic activity. Conclusions. Neea macrophylla presented a slightly higher number of mycorrhizal root infections in comparisonto the other species, indicating that this could be a tolerance strategy in those environments, while in Cecropia palmata and Caseariaarborea it seems that enzymatic activity is the strategy employed.

  14. Anti-inflammatory activities of cecropin A and its mechanism of action.

    Science.gov (United States)

    Lee, Eunjung; Shin, Areum; Kim, Yangmee

    2015-01-01

    Cecropin A is a novel 37-residue cecropin-like antimicrobial peptide isolated from the cecropia moth, Hyalophora cecropia. We have demonstrated that cecropin A is an antibacterial agent and have investigated its mode of action. In this study, we show that cecropin A has potent antimicrobial activity against 2 multidrug resistant organisms-Acinetobacter baumanii and-Pseudomonas aeruginosa. Interactions between cecropin A and membrane phospholipids were studied using tryptophan blue shift experiments. Cecropin A has a strong interaction with bacterial cell mimetic membranes. These results imply that cecropin A has selectivity for bacterial cells. To address the potential the rapeutic efficacy of cecropin A, its anti-inflammatory activities and mode of action in mouse macrophage-derived RAW264.7 cells stimulated with lipopolysaccharide (LPS) were examined. Cecropin A suppressed nitrite production, mTNF-α, mIL-1β, mMIP-1, and mMIP-2 cytokine release in LPS-stimulated RAW264.7 cells. Furthermore, cecropin A inhibited intracellular cell signaling via the ERK, JNK, and p38 MAPK pathway, leading to the prevention of COX-2 expression in LPS-stimulated RAW264.7 cells. These results strongly suggest that cecropin A should be investigated as a potential agent for the prevention and treatment of inflammatory diseases. PMID:25319409

  15. Florística e estrutura de fragmento florestal em área de transição na Amazônia Matogrossense no município de Sinop Floristics and structure of a forest fragment at a transitional zone at the Amazon in Mato Grosso State, Municipality of Sinop

    Directory of Open Access Journals (Sweden)

    Rosalia de Aguiar Araujo

    2009-01-01

    Full Text Available A fragmentação do ambiente é intensa na amazônia matogrossense e é esperado como consequência, além do desaparecimento da vegetação original, que a flora dos fragmentos seja transicional, com elementos de floresta amazônica e de cerrado e que já apresentem elevada presença de famílias e espécies pioneiras. Este trabalho objetivou avaliar a composição florística e obter parâmetros fitossociológicos de componentes arbóreos presentes em um fragmento urbano no município de Sinop, Mato Grosso com vistas a confirmar sua classificação como vegetação de transição e detectar indícios de perturbação pela fragmentação. A vegetação foi amostrada pela instalação de 25 parcelas permanentes de 20 x 20m, onde foram amostrados os indivíduos com CAP igual ou superior a 15 cm à altura de 1,30m do solo. A densidade total da área foi de 1555 ind./ha, distribuídos em 37 famílias botânicas, 81 gêneros e 113 espécies. A família mais representativa foi Leguminosae com 14 espécies. As espécies que mais contribuíram em abundância e apresentaram maior frequência foram: Cecropia sciadophylla, Cecropia sp., Bellucia grossularioides e Vismia guianensis. O índice de Shannon (H' foi de 3,55, considerado alto para uma floresta de transição. A equabilidade de Pielou foi de 0,75, sugerindo grande dominância de poucas espécies. As espécies que mais se destacaram em ordem decrescente de VI (% foram Cecropia sp., Bellucia grossularioides, Qualea ingens, Cecropia sciadophylla, Vismia guianensis, Miconia prasina, Trattinickia burserifolia, Unonopsis guatterioides e Schefflera vinosa. O remanescente apresenta uma flora mista amazônica e de cerrado, confirmando ser ecótono e a abundância de pioneiras sugere distúrbios. Esta floresta protege espécies madeireiras e frutíferas com grande potencial para uso múltiplo, podendo ser um espaço educativo com vistas a conservação e manejo sustentável.Fragmentation is intense in

  16. Direct analysis of thymic function in children with Down's syndrome

    Directory of Open Access Journals (Sweden)

    Meschiari Liviana

    2005-02-01

    Full Text Available Abstract Background Down's syndrome (DS is characterized by several immunological defects, especially regarding T cell compartment. DS is considered the best example of accelerated ageing in humans. Direct observations of the thymus have shown that in DS this organ undergoes severe histological and morphological changes. However, no data on its capacity to generate T cells are present in the literature. Here, using a new technology based upon real time PCR, we have investigated the capacity of the thymus to produce and release newly generated T lymphocytes (the so called "recent thymic emigrants", RTE in children with DS. Methods We studied 8 children affected by DS, aged 2–7 years, compared with 8 age- and sex-matched healthy controls. Flow cytometry was used to determine different lymphocytes subsets. Real time PCR with the Taqman system was used to quantify the amount of RTE, i.e. peripheral blood lymphocytes that express the T cell receptor rearrangement excision circles (TREC. Results In comparison with control children, those with DS had a significant lower number of TREC+ peripheral blood cells. Moreover, in DS children but not in controls, a strong negative correlation between age and the levels of TREC+ cells was found. Conclusions The direct measure of thymic output indicates that the impairment of the organ results in a reduced production of newly generated T cells. This observation could suggest that cytokines able to modulate thymic function, such as interleukins, could be useful to improve the functionality of the organ and to treat the immunodeficiency present in DS subjects.

  17. Direct analysis of thymic function in children with Down's syndrome

    Science.gov (United States)

    Prada, Nicole; Nasi, Milena; Troiano, Leonarda; Roat, Erika; Pinti, Marcello; Nemes, Elisa; Lugli, Enrico; Ferraresi, Roberta; Ciacci, Luigi; Bertoni, Davide; Biagioni, Ornella; Gibertoni, Milena; Cornia, Cristina; Meschiari, Liviana; Gramazio, Elisabetta; Mariotti, Mauro; Consolo, Ugo; Balli, Fiorella; Cossarizza, Andrea

    2005-01-01

    Background Down's syndrome (DS) is characterized by several immunological defects, especially regarding T cell compartment. DS is considered the best example of accelerated ageing in humans. Direct observations of the thymus have shown that in DS this organ undergoes severe histological and morphological changes. However, no data on its capacity to generate T cells are present in the literature. Here, using a new technology based upon real time PCR, we have investigated the capacity of the thymus to produce and release newly generated T lymphocytes (the so called "recent thymic emigrants", RTE) in children with DS. Methods We studied 8 children affected by DS, aged 2–7 years, compared with 8 age- and sex-matched healthy controls. Flow cytometry was used to determine different lymphocytes subsets. Real time PCR with the Taqman system was used to quantify the amount of RTE, i.e. peripheral blood lymphocytes that express the T cell receptor rearrangement excision circles (TREC). Results In comparison with control children, those with DS had a significant lower number of TREC+ peripheral blood cells. Moreover, in DS children but not in controls, a strong negative correlation between age and the levels of TREC+ cells was found. Conclusions The direct measure of thymic output indicates that the impairment of the organ results in a reduced production of newly generated T cells. This observation could suggest that cytokines able to modulate thymic function, such as interleukins, could be useful to improve the functionality of the organ and to treat the immunodeficiency present in DS subjects. PMID:15715912

  18. Guidelines for Screening, Early Diagnosis and Management of Severe Combined Immunodeficiency (SCID) in India.

    Science.gov (United States)

    Madkaikar, Manisha; Aluri, Jahnavi; Gupta, Sudhir

    2016-05-01

    Severe combined immunodeficiency (SCID) is one of the most severe and fatal forms of inherited primary immunodeficiency. Early diagnosis of SCID improves the outcome of life before and after hematopoietic stem cell transplant (HSCT). SCID fulfills the internationally-established criteria for a condition to be screened for at birth. T cell receptor excision circle (TREC) assay is commonly used in western countries as part of newborn blood spot screening (NBS) program as the assay has high sensitivity and specificity to identify SCID infants, allowing early intervention and curative bone marrow (BM) transplantation. In India, the blood spot based screening programs are yet to mature into a full-fledged national program. Moreover, TREC assay, a PCR based test, is not widely available and may cost USD 5-7 per test; thus limiting its applicability for screening newborns in Indian scenario. Most of the SCID patients have lymphopenia at birth and routine evaluation for absolute lymphocyte count (ALC) on cord blood samples can help in pre-symptomatic detection and early intervention for neonates with SCID. Although ALC count lacks the sensitivity and specificity of TREC assay; its lower cost and widespread availability makes it an attractive option for identifying newborns with lymphopenia during the post-partum hospital stay. BCG vaccine and other live attenuated vaccines (e.g., oral polio vaccine) should be withheld in lymphopenic infants until SCID is excluded by clinical and/or immunological work-up. A diagnosis of SCID warrants immediate care to prevent and treat infections and wherever feasible, early stem cell transplantation for disease free survival. PMID:26920398

  19. Formation of fast shocks by magnetic reconnection in the solar corona

    Science.gov (United States)

    Hsieh, M. H.; Tsai, C. L.; Ma, Z. W.; Lee, L. C.

    2009-09-01

    Reconnections of magnetic fields over the solar surface are expected to generate abundant magnetohydrodynamic (MHD) discontinuities and shocks, including slow shocks and rotational discontinuities. However, the generation of fast shocks by magnetic reconnection process is relatively not well studied. In this paper, magnetic reconnection in a current sheet is studied based on two-dimensional resistive MHD numerical simulations. Magnetic reconnections in the current sheet lead to the formation of plasma jets and plasma bulges. It is further found that the plasma bulges, the leading part of plasma jets, in turn lead to the generation of fast shocks on flanks of the bulges. The simulation results show that during the magnetic reconnection process, the plasma forms a series of structures: plasma jets, plasma bulges, and fast shocks. As time increases, the bulges spread out along the current sheet (+/-z direction) and the fast shocks move just ahead of the bulges. The effects of initial parameters ρs/ρm, β∞, and trec on the fast shock generation are also examined, where ρs/ρm is the ratio of plasma densities on two sides of the initial current sheet, β∞=P∞/(B∞2/2μ0), P∞ is the plasma pressure and B∞ is the magnetic field magnitude far from the current sheet, and trec is the reconnection duration. In the asymmetric case with ρs/ρm=2, β∞=0.01 and trec=1000, the maximum Alfvén Mach number of fast shocks (MA1 max) is MA1 max≅1.1, where MA1=Vn1/VA1, and Vn1 and VA1 are, respectively, the normal upstream fluid velocity and the upstream Alfvén speed in the fast shocks frame. As the density ratio ρs/ρm (=1-8) and plasma beta β∞ (=0.0001-1) increase, MA1 max varies slightly. For the case with a large plasma beta β∞ (=5), the fast shock is very weak. As the reconnection duration trec increases, the bulges lead to generation of fast shocks with a higher MA1 max. The present results can be applied to the mechanism of coronal heating by fast shocks.

  20. Placental Transfer of Maternally-Derived IgA Precludes the Use of Guthrie Card Eluates as a Screening Tool for Primary Immunodeficiency Diseases

    OpenAIRE

    Stephan Borte; Magdalena Janzi; Qiang Pan-Hammarström; Ulrika von Döbeln; Lennart Nordvall; Jacek Winiarski; Anders Fasth; Lennart Hammarström

    2012-01-01

    There is a need for neonatal screening tools to improve the long-term clinical outcome of patients with primary immunodeficiency diseases (PID). Recently, a PCR-based screening method for both TRECs and KRECs using Guthrie card samples has been developed. However, the applicability of these excision circle assays is limited to patients with severe T or B cell lymphopenia (SCID, XLA and A-T), whereas the most common forms of PID are not detected. Absence of serum IgA is seen in a major fractio...

  1. Automatic Question Answering from Web Documents

    Institute of Scientific and Technical Information of China (English)

    LI Xin; HU Dawei; LI Huan; HAO Tianyong; CHEN Enhong; LIU Wenyin

    2007-01-01

    A passage retrieval strategy for web-based question answering (QA) systems is proposed in our QA system. It firstly analyzes the question based on semantic patterns to obtain its syntactic and semantic information and then form initial queries. The queries are used to retrieve documents from the World Wide Web (WWW) using the Google search engine. The queries are then rewritten to form queries for passage retrieval in order to improve the precision. The relations between keywords in the question are employed in our query rewrite method. The experimental result on the question set of the TREC-2003 passage task shows that our system performs well for factoid questions.

  2. Nursing home administrators’ perspectives on a study feedback report: a cross sectional survey

    Directory of Open Access Journals (Sweden)

    Boström Anne-Marie

    2012-09-01

    Full Text Available Abstract Background This project is part of the Translating Research in Elder Care (TREC program of research, a multi-level and longitudinal research program being conducted in 36 nursing homes in three Canadian Prairie Provinces. The overall goal of TREC is to improve the quality of care for older persons living in nursing homes and the quality of work life for care providers. The purpose of this paper is to report on development and evaluation of facility annual reports (FARs from facility administrators’ perspectives on the usefulness, meaningfulness, and understandability of selected data from the TREC survey. Methods A cross sectional survey design was used in this study. The feedback reports were developed in collaboration with participating facility administrators. FARs presented results in four contextual areas: workplace culture, feedback processes, job satisfaction, and staff burnout. Six weeks after FARs were mailed to each administrator, we conducted structured telephone interviews with administrators to elicit their evaluation of the FARs. Administrators were also asked if they had taken any actions as a result of the FAR. Descriptive and inferential statistics, as well as content analysis for open-ended questions, were used to summarize findings. Results Thirty-one facility administrators (representing thirty-two facilities participated in the interviews. Six administrators had taken action and 18 were planning on taking action as a result of FARs. The majority found the four contextual areas addressed in FAR to be useful, meaningful, and understandable. They liked the comparisons made between data from years one and two and between their facility and other TREC study sites in their province. Twenty-two indicated that they would like to receive information on additional areas such as aggressive behaviours of residents and information sharing. Twenty-four administrators indicated that FARs contained enough information, while eight

  3. Discovery of a candidate protoplanetary disk around the embedded source IRc9 in Orion

    OpenAIRE

    Smith, Nathan; Bally, John

    2005-01-01

    We report the detection of spatially-extended mid-infrared emission around the luminous embedded star IRc9 in OMC-1, as seen in 8.8, 11.7, and 18.3 micron images obtained with T-ReCS on Gemini South. The extended emission is asymmetric, and the morphology is reminiscent of warm dust disks around other young stars. The putative disk has a radius of roughly 1.5 arcsec (700 AU), and a likely dust mass of almost 10 Earth masses. The infrared spectral energy distribution of IRc9 indicates a total ...

  4. En vue de l'obtention du diplôme d'ingénieur d'état en Agronomie Spécialité : Production et Amélioration végétale

    OpenAIRE

    BAKHTI, Ahlem Ismahane

    2015-01-01

    To make an inventory of local and introduced varieties of olive trecs in the wilaya of Tlemcen, we m'as followed yards harvesting Olives, mainly in two orchards (orchard 1: Merazga and orchard 2 : Ain Youssej). Then, until the olive oil is worked in the ou-mil! of Zenôta. This study pointed out to us the dominance oftwo local vaneties (Chemial and Sigoise) and two varieties introduced (Manzanille and Cornicabra), introduced only in some orchards. Orchard No. 1 (Merazga) grown loca...

  5. Premières évaluations de la recherche d’information dans les blogs

    OpenAIRE

    Fautsch, Claire; Savoy, Jacques

    2010-01-01

    Recourant au modèle vectoriel tf idf, ainsi qu’à trois approches probabilistes et un modèle de langue, cet article évalue leur performance sur un corpus TREC extrait de la blogosphère et comprenant 100 requêtes. Basé sur deux mesures de performance, nous démontrons que l’absence d’enracineur s’avère plus efficace que d’autres approches (enracineur léger ou celui de Porter).

  6. PolarTREC—A Model Program for Taking Polar Literacy into the Future

    Science.gov (United States)

    Warburton, J.; Timm, K.; Larson, A. M.

    2009-12-01

    Polar TREC—Teachers and Researchers Exploring and Collaborating, is a three-year (2007-2009) NSF-funded International Polar Year (IPY) teacher professional development program that advances Science, Technology, Engineering, and Mathematics (STEM) education by improving teacher content knowledge and instructional practices through Teacher Research Experiences (TRE) in the Arctic and Antarctic. Leveraging profound changes and fascinating science taking place in the polar regions, PolarTREC broadly disseminates activities and products to students, educators, researchers, and the public, connecting them with the Arctic and Antarctica and sustaining the widespread interest in the polar regions and building on the enthusiasm that was generated through IPY. Central to the PolarTREC Teacher Research Experience Model, over 40 teachers have spent two to eight weeks participating in hands-on research in the polar regions and sharing their experiences with diverse audiences via live events, online multimedia journals, and interactive bulletin boards. The Connecting Arctic/Antarctic Researchers and Educators (CARE) Network unifies learning community members participants, alumni, and others, developing a sustainable association of education professionals networking to share and apply polar STEM content and pedagogical skills. Educator and student feedback from preliminary results of the program evaluation has shown that PolarTREC’s comprehensive program activities have many positive impacts on educators and their ability to teach science concepts and improve their teaching methods. Additionally, K-12 students polled in interest surveys showed significant changes in key areas including amount of time spent in school exploring research activities, importance of understanding science for future work, importance of understanding the polar regions as a person in today’s world, as well as increased self-reported knowledge and interest in numerous science content areas. Building

  7. Ellis y el Constructivismo: una perspectiva crítica sobre la Terapia Racional Emotivo Conductual

    OpenAIRE

    Ronald Toro

    2014-01-01

    El presente artículo de reflexión tuvo como objetivo abordar desde una postura crítica dos aspectos funda- mentales de la Terapia Racional Emotivo Conductual (TREC): la postura constructivista asumida por Ellis en sus últimos años y las nociones de irracionalidad según el modelo racionalista tradicional en psicotera- pia. Se tomó por lo tanto una posición en contra de las afirmaciones del padre de esta psicoterapia, quien sus- tentado en las nociones constructivistas radicales que afir...

  8. Assimilation of radar-based nowcast into HIRLAM NWP model

    DEFF Research Database (Denmark)

    Jensen, David Getreuer; Petersen, Claus; Rasmussen, Michael R.

    2015-01-01

    The present study introduces a nowcast scheme that assimilates radar extrapolation data (RED) into a nowcasting version of the high resolution limited area model (HIRLAM) numerical weather prediction (NWP) model covering the area of Denmark. The RED are based on the Co-TREC (tracking radar echoes...... by correlation) methodology and are generated from cleaned radar mosaics from the Danish weather radar network. The assimilation technique is a newly developed method that increases model precipitation by increasing low-level convergence and decreasing convergence aloft in order to increase the...

  9. Resistance of particleboard panels made of agricultural residues and bonded with synthetic resins or PVC plastic to wood-rotting fungi

    Directory of Open Access Journals (Sweden)

    Divino Eterno Teixeira

    2009-12-01

    Full Text Available This study aims to evaluate the resistance of three types of particleboard panel to biodeterioration, two of which bonded with synthetic resins and one bonded with PVC plastic. Composite panels were made using sugar cane straw particles as raw material which were bonded together with urea-formaldehyde (UF, tannin-formaldehyde (TANI and PVC plastic (PVC resins. Decay tests were performed following procedures outlined in the ASTM D2017-81/1994 standard, whereby sample specimens were subjected to attack by white rot fungus Trametes versicolor and brown rot fungus Gloeophyllum trabeum using pine (Pinus sp. and embaúba (Cecropia sp. as reference timber. Panels bonded with PVC resin were rated ‘resistant’ to attack by both fungi while those bonded with UF and TANI resins were rated ‘slightly resistant’ to their attack.

  10. Mexican plants with hypoglycaemic effect used in the treatment of diabetes.

    Science.gov (United States)

    Andrade-Cetto, Adolfo; Heinrich, Michael

    2005-07-14

    Diabetes mellitus is a syndrome which affects more and more people in all countries over the world. In México, it is commonly treated with herbal extracts. Such treatment may be of considerable benefit especially during the early stages of the illness. In this review, we discuss species commonly used in México in the treatment of diabetes. A total of 306 species have records of a popular use in the treatment of this syndrome in México. Seven of these species--Cecropia obtusifolia Bertol. (Cecropiaceae), Equisetum myriochaetum Schlecht & Cham (Equisetaceae), Acosmium panamense (Benth.) Yacolev (Fabaceae), Cucurbita ficifolia Bouché (Cucurbitaceae), Agarista mexicana (Hemsl.) Judd. (Ericaeae), Brickellia veronicaefolia (Kunth) A. Gray (Asteraceae), Parmentiera aculeata (Kunth) Seem. (Bignoniaceae)--are discussed in greater detail, highlighting our current knowledge about these botanicals, but also the enormous gaps in our knowledge, most notably as it relates to the species' toxicology, the pharmacokinetics of its active constituents and their metabolism. PMID:15964161

  11. Avaliação da atividade leishmanicida in vitro de plantas medicinais Evaluation of the in vitro leishmanicidal activity of medicinal plants

    Directory of Open Access Journals (Sweden)

    Jeamile L. Bezerra

    2006-12-01

    Full Text Available Na busca de novos agentes leishmanicidas, avaliamos em culturas de promastigotas de Leishmania amazonensis o efeito dos extratos hidroalcoólicos das folhas de Tephrosia cinerea (L. Pers. (Fabaceae, Dichorisandra sp (Commelinaceae, Syzygium jambolanum DC. (Myrtaceae, Julocroton triqueter (Lam. Didr. var. triqueter (Euphorbiaceae, Passiflora edulis Sims(Passifloraceae, Cecropia sp (Cecropiaceae, Chenopodium ambrosioides L.(Chenopodiaceae, Pedilanhus tithymaloides (L. Poit (Euphorbiaceae, Peristrophe angustifolia Nees(Acanthaceae e o extrato aquoso do mesocarpo de Orbignya phalerata Mart. (Arecaceae. As promastigotas de Leishmania amazonensis foram cultivadas em presença de 31,3; 63,5; 125,0; 250,0 e 500,0 µg/mL dos extratos por 24 horas. Ao final desse período foi calculada a concentração inibitória do crescimento (CI50 em relação às culturas não tratadas com os extratos. Os extratos das espécies J. triqueter, Dichorisandra sp e T. cinerea apresentaram maior eficácia em induzir a morte das promastigotas, com CI50 de 29,5; 32,9 e 43,6 µg/mL, respectivamente. P. edulis, C. ambrosioides e S. jambolanum apresentaram eficácia moderada com CI50 de 150,1; 151,9 e 166,6 µg/mL, respectivamente. P. tithymaloides e O. phalerata apresentaram baixo efeito leishmanicida com CI50 >500 µg/mL, enquanto Peristrophe angustifolia e Cecropia spnão apresentaram efeito. Dessa forma, dos dez extratos testados, três apresentaram uma expressiva atividade leishmanicida in vitro.Searching for new leishmanicidal agents, promastigotes forms of L. amazonensis were cultured with the hydroalcoholic extracts obtained from the Tephrosia cinerea (L. Pers. (Fabaceae, Dichorisandra sp (Commelinaceae, Syzygium jambolanum DC. (Myrtaceae, Julocroton triqueter (Lam. Didr. var. triqueter (Euphorbiaceae, Passiflora edulis Sims(Passifloraceae, Cecropia sp (Cecropiaceae, Chenopodium ambrosioides L.(Chenopodiaceae, Pedilanhus tithymaloides (L. Poit (Euphorbiaceae

  12. Ecological significance of light controlled seed germination in two contrasting tropical habitats.

    Science.gov (United States)

    Vàzquez-Yanes, C; Orozco-Segovia, A

    1990-06-01

    The effects of temperature, photoperiod, phytochrome photoreversion and the response to a R/FR ratio gradient were investigated in seeds of four species from two contrasting tropical habitats; two species from a rain forest (Cecropia obtusifolia and Piper umbellatum) and two from a high altitude lava field covered by low vegetation (Buddleja cordata and Chenopodium ambrosioides). In the rain forest seed species the photoblastic response seems to be adapted to light quality changes due to canopy destruction, on the other hand, the lava field seed species seem to be adapted to instantaneous light stimulus such as would be produced by the sudden exposure of a buried seed to the soil surface light environment. PMID:22160107

  13. Botanical profile of bee pollen from the southern coastal region of Bahia, Brazil Perfil botânico do pólen apícola proveniente do litoral sul da Bahia, Brasil

    Directory of Open Access Journals (Sweden)

    Marcos da Costa Dórea

    2010-09-01

    Full Text Available This paper aims to identify the botanical origin of pollen loads collected by Apis mellifera L. in Canavieiras municipality, Bahia state. It provides a list of polliniferous plant species from the Atlantic Forest biome that are important for the development of regional apiculture. Using the acetolysis method, 35 bee-pollen samples were analyzed qualitatively and quantitatively. Results showed that pollen types Elaeis (23.99%, Mimosa pudica (22.78% and Cecropia (13.68% were the most abundant among the samples. These also showed the highest relative frequencies of the material studied and were important pollen sources for bees in the study area.O presente trabalho teve por objetivo identificar a origem botânica das bolotas de pólen coletadas pelas abelhas Apis mellifera L. no município de Canavieiras, Bahia, gerando uma lista de plantas poliníferas pertencentes ao bioma Mata Atlântica e importantes para o desenvolvimento da apicultura regional. Foram analisadas palinologicamente 35 amostras de pólen apícola, utilizando-se o processo de acetólise para, em seguida, serem feitas análises qualitativas e quantitativas. Os resultados revelaram que os tipos polínicos Elaeis (23,99%, Mimosa pudica (22,78% e Cecropia (13,68% foram os mais abundantes no pólen apícola analisado. Estes tipos polínicos também apresentaram as maiores frequências relativas de todo o material estudado e representam importantes plantas fontes de pólen para as abelhas na área estudada.

  14. Citogenética de Angiospermas coletadas em Pernambuco: V Cytogenetics of Angiosperms collected in the State of Pernambuco: V

    Directory of Open Access Journals (Sweden)

    Andrea Pedrosa

    1999-04-01

    Full Text Available Foram analisadas 33 espécies, entre nativas e introduzidas, pertencentes a 20 famílias de angiospermas ocorrentes no Estado de Pernambuco. A caracterização cariotípica da maioria das espécies foi baseada no número e morfologia cromossômica, padrão de condensação de cromossomos profásicos e estrutura de núcleo interfásico. Cinco espécies tiveram seus números cromossômicos determinados pela primeira vez, sendo elas: Cereus jamacaru (2n=22, Clitoria fairchildiana (2n=22, Eugenia luschnathiana (2n=22, Licania tomentosa (2n=22 e Spondias tuberosa (n=16. No caso de Licania tomentosa esta é a primeira citação de número cromossômico para o gênero. Das outras 28 espécies, três (Cecropia cf. palmata, 2n=26; Crinum erubescens, 2n=70; e Schinus terebentifolius, 2n=28 apresentaram números cromossômicos diferentes dos registrados previamente na literatura.Thirty three native and introduced species from 20 families of angiosperms collected in the State of Pernambuco were analysed. The karyotype description of the majority of the species was based on chromosome number and morphology, condensation pattern of prophase chromosomes as well as interphase nuclear structure. In five species (Cereus jamacaru, 2n=22; Clitoria fairchildiana, 2n=22; Eugenia luschnathiana, 2n=22; Licania tomentosa, 2n=22; and Spondias tuberosa, n=16 the chromosome number is reported here for the first time. In the case of Licania tomentosa, this is also the first report for the genus. Among the other 28 species, three (Cecropia cf. palmata, 2n=26; Crinum erubescens, 2n=70; and Schinus terebentifolius, 2n=28 showed chromosome numbers different from what has previously been reported.

  15. Fruits as unusual food items of the carnivorous bat Chrotopterus auritus (Mammalia, Phyllostomidae from southeastern Brazil Frutos como item alimentar não habitual do morcego carnívoro Chrotopterus auritus (Mammalia, Phyllostomidae da região sudeste do Brasil

    Directory of Open Access Journals (Sweden)

    Wilson Uieda

    2007-01-01

    Full Text Available We record here the occurrence of seeds of several plant species in feces found inside the day roost of Chrotoperus auritus, at the Estação Experimental de Itirapina, State of São Paulo, Southeastern Brazil, in July 2001. The roost was used by only one adult female, non pregnant, during about a month. In the feces, fur of rodent (Muridae, bone fragments, fragments of Scarabaeidae and other beetles and insects, leaves (not determined and many seeds of Piperaceae (Piper sp., Urticaceae (Cecropia sp. and Solanaceae (Solanum spp. and Cestrum sp. were found. In the gut content, insect fragments, fur of rodent (Muridae and plant remains were found. It was discussed why this carnivorous bat would be consuming plant items.Relatamos aqui a ocorrência de sementes de diversas espécies de plantas em fezes encontradas num abrigo diurno de C. auritus, localizado na Estação Experimental de Itirapina, São Paulo, em julho de 2001. O abrigo era utilizado por apenas uma fêmea adulta não grávida durante cerca de um mês. Nas fezes, foram encontrados pêlos de roedor (Muridae, fragmentos de ossos, fragmentos de Scarabaeidae e de outros Coleópteros e insetos, folhas (não identificáveis e muitas sementes de Piperaceae (Piper sp., Urticaceae (Cecropia sp. e Solanaceae (Solanum spp. e Cestrum sp.. No trato digestivo foram encontrados fragmentos de insetos, pêlos de roedores (Muridae e restos de vegetais. Discute-se porque esse morcego carnívoro poderia estar consumindo itens vegetais.

  16. Plantas utilizadas na medicina popular brasileira com potencial atividade antifúngica Plants with potencial antifungal activity employed in Brazilian folk medicine

    Directory of Open Access Journals (Sweden)

    Raquel Fenner

    2006-09-01

    Full Text Available Neste trabalho foi realizado um levantamento bibliográfico etnobotânico sobre plantas utilizadas pela população brasileira no tratamento de sinais e sintomas relacionados às infecções fúngicas. Foram citadas 409 espécies, distribuídas em 98 famílias, com maior concentração em Fabaceae e Asteraceae. Para as dez espécies mais citadas, foi realizada uma busca relativa a estudos de atividade antifúngica na base de dados MEDLINE-PubMed. Somente foram encontrados estudos para Phytolacca americana L., Rosmarinus officinalis L., Mirabilis jalapa L., Schinus molle L. Entre as dez espécies mais utilizadas, seis correspondem a espécies nativas: Anacardium occidentale L., Cecropia peltata L., Schinus molle L., Schinus terebinthinfolius Raddi, Stryphnodendron adstringens (Mart. Coville e Tabebuia heptaphylla (Vell. Toledo.The aim of this work was to draw up a list of plants used by Brazilian population for the treatment of signs and symptoms related to fungal infections and to verify the existence of scientific data related to the antifungal activity in the databasis MEDLINE-PubMed. Four hundread and nine species were listed, which are distributed in ninety eight families, mainly Fabaceae and Asteraceae. Among the more frequently mentioned species (10, only four were evaluated regarding to the antifungal activity: Phytolacca americana L., Rosmarinus officinalis L., Mirabilis jalapa L. and Schinus molle L. From those ten species, six are native (Anacardium occidentale L., Cecropia peltata L., Schinus molle L., Schinus terebinthifolius Raddi, Stryphnodendron adstringens (Mart. Coville e Tabebuia heptaphylla (Vell. Toledo.

  17. Chemically tagged DNA tetrahedra as linker for single molecule force spectroscopy

    International Nuclear Information System (INIS)

    Full text: Atomic force microscope (AFM) has developed to one of the key techniques in nanoscience. The enhancement of the cantilever to a molecular biosensor yielded to techniques that allow for the detection of forces between single receptor ligand complexes in the pico newton range down to a single chemical bond (MRFS). Furthermore, the combination of recognition and topographical measurements, simultaneous topography and recognition imaging (TREC), is capable of determining receptor distributions on surfaces at the nano scale. Nevertheless there are still limitations for a wide use of these techniques as standard tool in applied life science and in the clinical field. The main limitation is the complex chemical tip functionalization of the AFM cantilever, which restricts these techniques to experts in basic science. In this work we present an alternative way of functionalizing the AFM tip for MRFS and TREC by the use of DNA building blocks. For this, tetrahedra shaped DNA building blocks were bonded to gold coated cantilevers via three disulfide vertices. For a test system the forth vertex carried a biotin tag. Alternatively, it was equipped with a short single strand DNA and used in combination with DNA aptamers containing the corresponding counter sequence. Compared to commonly used complex standard tip functionalization, the here described procedure can be done with basic chemical knowledge via a simple incubation or pick up procedure. It could thus be one important step to enable the use of functionalized cantilevers to many research labs. (author)

  18. Physical activity and transcutaneous oxygen pressure in men with spinal cord injury

    Directory of Open Access Journals (Sweden)

    Beatriz Crespo-Ruiz, MSc

    2012-08-01

    Full Text Available This pilot study proposed a method for assessing the status of vascular flow measured by transcutaneous oxygen pressure (TcPO2 in the area of the ischium in people with spinal cord injury (SCI. In a sample of 38 men (two groups: 12 physically active and 26 sedentary with thoracic SCI, the distribution of the physiological response of the tissues under load during sitting was assessed through analysis of ischium TcPO2 values obtained by an oximeter. TcPO2 baseline, recovery time of TcPO2 after sitting (Trec, the percentage of TcPO2 (%TcPO2 of maximum pressure TcPO2, and mechanic maximal pressure (Pmax were evaluated. Trec in the physically active group was significantly lower (p < 0.05 than in the sedentary group. Likewise, significant differences in %TcPO2 between groups (p < 0.05 were also found. We concluded that the physiological response of the tissues under an individual with SCI’s own weight resulting from prolonged sitting is better in those who are physically active.

  19. Mid Infrared View of the High Mass Star Formation Region W51A

    CERN Document Server

    Barbosa, Cassio L; Damineli, Augusto; Conti, Peter S; Gusmão, Danilo M

    2016-01-01

    In this paper we present the results of a mid infrared study of G49.5-0.4, or W51A, part of the massive starbirth complex W51. Combining public data from the $Spitzer$ IRAC camera, and Gemini mid infrared camera T-ReCS at 7.73, 9.69, 12.33 and 24.56 \\micron, with spatial resolution of $\\sim$0.5\\arcsec, we have identified the mid infrared counterparts of 8 ultracompact HII regions, showing that two radio sources are deeply embedded in molecular clouds and another is a cloud of ionized gas. From the T-ReCS data we have unveiled the central core of W51 region, revealing massive young stellar candidates. We modeled the spectral energy distribution of the detected sources suggesting the embedded objects are sources with spectral types ranging from B3 to O5, but the majority of the fits indicate stellar objects with B1 spectral types. We also present an extinction map of IRS~2, showing that a region with lower extinction corresponds to the region where a proposed jet of gas has impacted the foreground cloud. From t...

  20. Wow, My Science Teacher Does Real Research! Engaging and Motivating Students Using Experiences from the Field

    Science.gov (United States)

    Scott, C.

    2013-12-01

    Students respond to personal connections. When K-12 science teachers are able to participate as field assistants on research projects, their students can benefit greatly from the stories, pictures, and video transmitted or brought back from the field. Teachers can translate and tailor their learning while in the field to the level of their students. Students are ';hooked' into science content by seeing their own teacher out there actually ';doing' science. The teacher is able to provide a direct content connection for the student, an avenue for understanding why ';learning this' is relevant and important. This presentation provides a case for why science teachers and researchers should collaborate as much as possible. The NSF funded PolarTREC program (Teachers and Researchers Exploring and Collaborating) is an excellent example of how to make this collaboration work. The presentation will also provide a look into how teachers can make an effective connection for their students between field science and classroom learning. Alaskan secondary science teacher Carol Scott spent a month at the Kevo Research Station in northern Finland in May/June 2013 as a PolarTREC teacher, and is translating this experience for students. She has also worked on an NSF Research Experience for Teachers grant in Prince William Sound, AK, and has successfully used this work to engage students in the classroom.

  1. Efficient and Effective Spam Filtering and Re-ranking for Large Web Datasets

    CERN Document Server

    Cormack, Gordon V; Clarke, Charles L A

    2010-01-01

    The TREC 2009 web ad hoc and relevance feedback tasks used a new document collection, the ClueWeb09 dataset, which was crawled from the general Web in early 2009. This dataset contains 1 billion web pages, a substantial fraction of which are spam --- pages designed to deceive search engines so as to deliver an unwanted payload. We examine the effect of spam on the results of the TREC 2009 web ad hoc and relevance feedback tasks, which used the ClueWeb09 dataset. We show that a simple content-based classifier with minimal training is efficient enough to rank the "spamminess" of every page in the dataset using a standard personal computer in 48 hours, and effective enough to yield significant and substantive improvements in the fixed-cutoff precision (estP10) as well as rank measures (estR-Precision, StatMAP, MAP) of nearly all submitted runs. Moreover, using a set of "honeypot" queries the labeling of training data may be reduced to an entirely automatic process. The results of classical information retrieval ...

  2. A DYNAMIC FEATURE SELECTION METHOD FOR DOCUMENT RANKING WITH RELEVANCE FEEDBACK APPROACH

    Directory of Open Access Journals (Sweden)

    K. Latha

    2010-07-01

    Full Text Available Ranking search results is essential for information retrieval and Web search. Search engines need to not only return highly relevant results, but also be fast to satisfy users. As a result, not all available features can be used for ranking, and in fact only a small percentage of these features can be used. Thus, it is crucial to have a feature selection mechanism that can find a subset of features that both meets latency requirements and achieves high relevance. In this paper we describe a 0/1 knapsack procedure for automatically selecting features to use within Generalization model for Document Ranking. We propose an approach for Relevance Feedback using Expectation Maximization method and evaluate the algorithm on the TREC Collection for describing classes of feedback textual information retrieval features. Experimental results, evaluated on standard TREC-9 part of the OHSUMED collections, show that our feature selection algorithm produces models that are either significantly more effective than, or equally effective as, models such as Markov Random Field model, Correlation Co-efficient and Count Difference method

  3. Ellis y el Constructivismo: una perspectiva crítica sobre la Terapia Racional Emotivo Conductual

    Directory of Open Access Journals (Sweden)

    Ronald Toro

    2014-01-01

    Full Text Available El presente artículo de reflexión tuvo como objetivo abordar desde una postura crítica dos aspectos funda- mentales de la Terapia Racional Emotivo Conductual (TREC: la postura constructivista asumida por Ellis en sus últimos años y las nociones de irracionalidad según el modelo racionalista tradicional en psicotera- pia. Se tomó por lo tanto una posición en contra de las afirmaciones del padre de esta psicoterapia, quien sus- tentado en las nociones constructivistas radicales que afirman que la realidad es subjetiva e imposible de co- nocer, y las repercusiones que esto ha tenido en otros autores como Mahoney o Meichenbaum, afirmó que dejaba atrás las posiciones lógico-positivistas iniciales de sus trabajos. El desenlace del problema en discusión se presentó usando las nociones del realismo crítico, una postura en la cual la realidad es objetiva pero se presenta al ser humano de forma distorsionada e im- precisa, debido a las limitaciones del aparato cognitivo y las necesidades adaptativas de supervivencia. Se ana- lizaron las posibilidades de errores epistemológicos en la postura de Ellis, y otras implicaciones del modelo TREC en la labor psicoterapéutica.

  4. Toronto co-op's wind plan takes shape

    International Nuclear Information System (INIS)

    The Toronto Renewable Energy Co-op (TREC) will soon be offering shares in its planned 660 kW wind turbine project proposed for Toronto's waterfront. A 1 kW share will cost about $3,000 and will generate 25 to 35 per cent of the power requirements of a family of four. The payback period is estimated to be 12 years. Shareholders can buy as much of the turbine's output as they wish, to a maximum of 50 kW. TREC's plans are to make a $220,000 down-payment on the $1.3 million turbine by December 1998 and to start construction by June or July 1999. The site has yet to be chosen. The preferred site is Gibraltar Point at the southwest tip of Toronto Island because of the strong winds which blow from the southwest. However, the site of the old Hearn coal-burning power plant may be the most feasible. Some of the details that still must be worked out include how investors would receive a credit for their wind power from Toronto Hydro. When the project is completed, it will be North America's first wind turbine array in an urban setting

  5. Quantification of newly produced B and T lymphocytes in untreated chronic lymphocytic leukemia patients

    Directory of Open Access Journals (Sweden)

    Caimi Luigi

    2010-11-01

    Full Text Available Abstract Background The immune defects occurring in chronic lymphocytic leukemia are responsible for the frequent occurrence of infections and autoimmune phenomena, and may be involved in the initiation and maintenance of the malignant clone. Here, we evaluated the quantitative defects of newly produced B and T lymphocytes. Methods The output of B and T lymphocytes from the production and maturation sites was analyzed in chronic lymphocytic leukemia patients and healthy controls by quantifying kappa-deleting recombination excision circles (KRECs and T-cell receptor excision circles (TRECs by a Real-Time PCR assay that simultaneously detects both targets. T-lymphocyte subsets were analyzed by six-color flow cytometric analysis. Data comparison was performed by two-sided Mann-Whitney test. Results KRECs level was reduced in untreated chronic lymphocytic leukemia patients studied at the very early stage of the disease, whereas the release of TRECs+ cells was preserved. Furthermore, the observed increase of CD4+ lymphocytes could be ascribed to the accumulation of CD4+ cells with effector memory phenotype. Conclusions The decreased number of newly produced B lymphocytes in these patients is likely related to a homeostatic mechanism by which the immune system balances the abnormal B-cell expansion. This feature may precede the profound defect of humoral immunity characterizing the later stages of the disease.

  6. Mapping molecular adhesion sites inside SMIL coated capillaries using atomic force microscopy recognition imaging.

    Science.gov (United States)

    Leitner, Michael; Stock, Lorenz G; Traxler, Lukas; Leclercq, Laurent; Bonazza, Klaus; Friedbacher, Gernot; Cottet, Hervé; Stutz, Hanno; Ebner, Andreas

    2016-08-01

    Capillary zone electrophoresis (CZE) is a powerful analytical technique for fast and efficient separation of different analytes ranging from small inorganic ions to large proteins. However electrophoretic resolution significantly depends on the coating of the inner capillary surface. High technical efforts like Successive Multiple Ionic Polymer Layer (SMIL) generation have been taken to develop stable coatings with switchable surface charges fulfilling the requirements needed for optimal separation. Although the performance can be easily proven in normalized test runs, characterization of the coating itself remains challenging. Atomic force microscopy (AFM) allows for topographical investigation of biological and analytical relevant surfaces with nanometer resolution and yields information about the surface roughness and homogeneity. Upgrading the scanning tip to a molecular biosensor by adhesive molecules (like partly inverted charged molecules) allows for performing topography and recognition imaging (TREC). As a result, simultaneously acquired sample topography and adhesion maps can be recorded. We optimized this technique for electrophoresis capillaries and investigated the charge distribution of differently composed and treated SMIL coatings. By using the positively charged protein avidin as a single molecule sensor, we compared these SMIL coatings with respect to negative charges, resulting in adhesion maps with nanometer resolution. The capability of TREC as a functional investigation technique at the nanoscale was successfully demonstrated. PMID:27265903

  7. THE EFFECT OF A SILICONE SWIM CAP ON SWIMMING PERFORMANCE IN TROPICAL CONDITIONS IN PRE-ADOLESCENTS

    Directory of Open Access Journals (Sweden)

    Olivier Hue

    2012-03-01

    Full Text Available We tested whether the silicone swim caps (SC worn by young swimmers in a tropical climate negatively influence aerobic performance. Nine trained pre- adolescents [11.8 (± 0.8 years] swam randomized 800-m trials (water: 32.9°C, outdoors: shade, 29.2 ± 0.2 °C, 74 ± 0.3 % rh with a SC or a nude head (NH. Performance times and heart rate (HR were monitored continuously. Rectal temperature (Trec was measured before and after trials. The rating of perceived exertion (RPE was assessed. Stroke frequency (SF, stroke length (SL and stroke index (SI were measured every 50-m. The SC trial was significantly longer than NH (799 ± 16 and 781 ± 16 seconds, respectively. Mean delta Trec was significantly greater in SC (0.2 ± 0.1°C vs. -0.1 ± 0.1°C in SC vs. NH, mean SI was significantly different in SC versus NH (1.83 ± 0.07 vs 1.73 ± 0.06; but RPE and mean HR, SF and SL showed no change. We conclude that a silicone swim cap worn in tropical environment significantly decreased 800-m crawl performance without affecting HR or RPE. Silicone swim caps worn by young swimmers in a tropical environment may also have negative effects on training capacity

  8. Human age estimation from blood using mRNA, DNA methylation, DNA rearrangement, and telomere length.

    Science.gov (United States)

    Zubakov, Dmitry; Liu, Fan; Kokmeijer, Iris; Choi, Ying; van Meurs, Joyce B J; van IJcken, Wilfred F J; Uitterlinden, André G; Hofman, Albert; Broer, Linda; van Duijn, Cornelia M; Lewin, Jörn; Kayser, Manfred

    2016-09-01

    Establishing the age of unknown persons, or persons with unknown age, can provide important leads in police investigations, disaster victim identification, fraud cases, and in other legal affairs. Previous methods mostly relied on morphological features available from teeth or skeletal parts. The development of molecular methods for age estimation allowing to use human specimens that possess no morphological age information, such as bloodstains, is extremely valuable as this type of samples is commonly found at crime scenes. Recently, we introduced a DNA-based approach for human age estimation from blood based on the quantification of T-cell specific DNA rearrangements (sjTRECs), which achieves accurate assignment of blood DNA samples to one of four 20-year-interval age categories. Aiming at improving the accuracy of molecular age estimation from blood, we investigated different types of biomarkers. We started out by systematic genome-wide surveys for new age-informative mRNA and DNA methylation markers in blood from the same young and old individuals using microarray technologies. The obtained candidate markers were validated in independent samples covering a wide age range using alternative technologies together with previously proposed DNA methylation, sjTREC, and telomere length markers. Cross-validated multiple regression analysis was applied for estimating and validating the age predictive power of various sets of biomarkers within and across different marker types. We found that DNA methylation markers outperformed mRNA, sjTREC, and telomere length in age predictive power. The best performing model included 8 DNA methylation markers derived from 3 CpG islands reaching a high level of accuracy (cross-validated R(2)=0.88, SE±6.97 years, mean absolute deviation 5.07 years). However, our data also suggest that mRNA markers can provide independent age information: a model using a combined set of 5 DNA methylation markers and one mRNA marker could provide

  9. Novel mutation in TP63 associated with ectrodactyly ectodermal dysplasia and clefting syndrome and T cell lymphopenia.

    Science.gov (United States)

    Giampietro, Philip F; Baker, Mei W; Basehore, Monica J; Jones, Julie R; Seroogy, Christine M

    2013-06-01

    A male child with clinical features consistent with EEC/EECUT plus syndrome (ectrodactyly, ectodermal dysplasia, clefting, urinary tract abnormalities, and thymic abnormalities) including mild ectodermal abnormalities, ectrodactyly of hands and feet, cleft palate, bilateral hydronephrosis, and T cell lymphopenia is reported. He was noted to have T cell receptor excision circle (TREC) analysis below the cutoff for normal on newborn screening and T cell lymphopenia on further immunologic evaluation. A novel, presumably pathogenic de novo 3 bp deletion in exon 7 of TP63 (c.970_972delATT; NCBI Reference Sequence NM_003722.4) was identified. This observation provides supporting evidence for the association between TP63 mutations and EECUT plus syndrome. Clinicians caring for infants presenting with EEC spectrum disorders in the newborn period should also consider the possibility of T cell lymphopenia. PMID:23613309

  10. Semantic Content Filtering with Wikipedia and Ontologies

    CERN Document Server

    Malo, Pekka; Ahlgren, Oskar; Wallenius, Jyrki; Korhonen, Pekka

    2010-01-01

    The use of domain knowledge is generally found to improve query efficiency in content filtering applications. In particular, tangible benefits have been achieved when using knowledge-based approaches within more specialized fields, such as medical free texts or legal documents. However, the problem is that sources of domain knowledge are time-consuming to build and equally costly to maintain. As a potential remedy, recent studies on Wikipedia suggest that this large body of socially constructed knowledge can be effectively harnessed to provide not only facts but also accurate information about semantic concept-similarities. This paper describes a framework for document filtering, where Wikipedia's concept-relatedness information is combined with a domain ontology to produce semantic content classifiers. The approach is evaluated using Reuters RCV1 corpus and TREC-11 filtering task definitions. In a comparative study, the approach shows robust performance and appears to outperform content classifiers based on ...

  11. An Efficient Passage Ranking Technique For a QA System

    Directory of Open Access Journals (Sweden)

    Pooja A

    2013-01-01

    Full Text Available Question answering (QA systems provide an intuitive way of requesting concise information from a givendata source. An important stage of such a system is the passage ranking stage, which ranks the possibleanswers based on their relevance to the question. There has been a lot of previous work on passageranking, employing lexical, semantic or syntactic methods, but to our knowledge there has been no methodthat comprehensively combines all 3 features. In this paper, we present a passage ranking technique thatleverages lexical, semantic and syntactic features together to rank the answers efficiently and effectively.This paper highlights the differences and improvements of the proposed technique over existing state-ofthe-art techniques like SSTK and IBM Model. The passage ranking technique has been evaluated withTREC QA dataset and is observed to give a significant 26.5% improvement in MRR over the existing stateof-the-art SSTK technique.

  12. The AMTEX Partnership{trademark} mid year report, fiscal year 1997

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1997-03-01

    The AMTEX Partnership{trademark} is a collaborative research and development program among the US Integrated Textile Complex (ITC), the US Department of Energy (DOE), the DOE national laboratories, other federal agencies and laboratories, and universities. The goal of AMTEX is to strengthen the competitiveness of this vital industry, thereby preserving and creating US jobs. Three AMTEX projects funded in FY 1997 are Diamond Activated Manufacturing Architecture (DAMA), Computer-Aided Fabric Evaluation (CAFE), and Textile Resource Conservation (TReC). The five sites involved in AMTEX work are Sandia National Laboratory (SNL), Los Alamos National Laboratory (LANL), Lawrence Livermore National Laboratory (LLNL), the Oak Ridge Y-12 Plant, and the Oak Ridge National Laboratory (ORNL) (the latter is funded through Y-12).

  13. Ce înseamnă să fii liber să alegi? (Milton Friedman şi Rose Friedman: Libertatea de a alege. O declaraţie personală)

    OpenAIRE

    Enache Bogdan

    2010-01-01

    Odată cu criza economică internaţională declanşată în 2008, cea mai gravă din epoca postbelică, critica capitalismului este din nou la modă în mediul intelectual, iar politicienii din toată lumea – trecând sub tăcere propriul rol în provocarea acestui fenomen regretabil – nu au întârziat să profite de această ocazie pentru a-şi extinde şi mai mult controlul asupra economiei şi societăţii în ansamblu.

  14. Search Result Diversification Based on Query Facets

    Institute of Scientific and Technical Information of China (English)

    胡莎; 窦志成; 王晓捷; 继荣

    2015-01-01

    In search engines, different users may search for different information by issuing the same query. To satisfy more users with limited search results, search result diversification re-ranks the results to cover as many user intents as possible. Most existing intent-aware diversification algorithms recognize user intents as subtopics, each of which is usually a word, a phrase, or a piece of description. In this paper, we leverage query facets to understand user intents in diversification, where each facet contains a group of words or phrases that explain an underlying intent of a query. We generate subtopics based on query facets and propose faceted diversification approaches. Experimental results on the public TREC 2009 dataset show that our faceted approaches outperform state-of-the-art diversification models.

  15. The silicate absorption profile in the ISM towards the heavily obscured nucleus of NGC 4418

    CERN Document Server

    Roche, P F; Gonzalez-Martin, O

    2015-01-01

    The 9.7-micron silicate absorption profile in the interstellar medium provides important information on the physical and chemical composition of interstellar dust grains. Measurements in the Milky Way have shown that the profile in the diffuse interstellar medium is very similar to the amorphous silicate profiles found in circumstellar dust shells around late M stars, and narrower than the silicate profile in denser star-forming regions. Here, we investigate the silicate absorption profile towards the very heavily obscured nucleus of NGC 4418, the galaxy with the deepest known silicate absorption feature, and compare it to the profiles seen in the Milky Way. Comparison between the 8-13 micron spectrum obtained with TReCS on Gemini and the larger aperture spectrum obtained from the Spitzer archive indicates that the former isolates the nuclear emission, while Spitzer detects low surface brightness circumnuclear diffuse emission in addition. The silicate absorption profile towards the nucleus is very similar to...

  16. Impaired progenitor cell function in HIV-negative infants of HIV-positive mothers results in decreased thymic output and low CD4 counts

    DEFF Research Database (Denmark)

    Nielsen, S D; Jeppesen, D L; Kolte, L;

    2001-01-01

    and fetal thymic organ cultures (FTOCs). Lower naive CD4 counts (459.3 +/- 68.9 vs 1128.9 +/- 146.8 cells/microL, P <.001) and reduced thymic output in infants of HIV-positive mothers were found (frequency of CD4(+) cells with TRECs was 3.6% +/- 0.7% compared with 14.3% +/- 2.2% in controls, P <.001......). In combination with lower red blood cell counts in infants of HIV-positive mothers, this finding suggested impairment of progenitor cell function. Indeed, progenitors from infants of HIV-positive mothers had decreased cloning efficiency (15.7% +/- 2.6% vs 55.8% +/- 15.9%, P =.009) and seemed to...... generate fewer T cells in FTOCs. In conclusion, lower numbers of naive CD4(+) cells and reduced thymic output in HIV-negative infants of HIV-positive mothers may be due to impaired progenitor cell function....

  17. Rhetorical relations for information retrieval

    DEFF Research Database (Denmark)

    Lioma, Christina; Larsen, Birger; Lu, Wei

    2012-01-01

    -called discourse structure has been applied successfully to several natural language processing tasks. This work studies the use of rhetorical relations for Information Retrieval (IR): Is there a correlation between certain rhetorical relations and retrieval performance? Can knowledge about a document’s rhetorical......Typically, every part in most coherent text has some plausible reason for its presence, some function that it performs to the overall semantics of the text. Rhetorical relations, e.g. contrast, cause, explanation, describe how the parts of a text are linked to each other. Knowledge about this so...... relations be useful to IR? We present a language model modification that considers rhetorical relations when estimating the relevance of a document to a query. Empirical evaluation of different versions of our model on TREC settings shows that certain rhetorical relations can benefit retrieval effectiveness...

  18. Evaluating relevance ranking strategies for MEDLINE retrieval.

    Science.gov (United States)

    Lu, Zhiyong; Kim, Won; Wilbur, W John

    2009-01-01

    This paper evaluates the retrieval effectiveness of relevance ranking strategies on a collection of 55 queries and about 160,000 MEDLINE((R)) citations used in the 2006 and 2007 Text Retrieval Conference (TREC) Genomics Tracks. The authors study two relevance ranking strategies: term frequency-inverse document frequency (TF-IDF) weighting and sentence-level co-occurrence, and examine their ability to rank retrieved MEDLINE documents given user queries. Furthermore, the authors use the reverse chronological order-PubMed's default display option-as a baseline for comparison. Retrieval effectiveness is assessed using both mean average precision and mean rank precision. Experimental results show that retrievals based on the two strategies had improved performance over the baseline performance, and that TF-IDF weighting is more effective in retrieving relevant documents based on the comparison between the two strategies. PMID:18952932

  19. California Energy Incentive Programs: An Annual Update on Key Energy Issues and Financial Opportunities for Federal Sites in California

    Energy Technology Data Exchange (ETDEWEB)

    None

    2011-12-01

    A spate of recently enacted energy legislation and associated program changes is providing numerous opportunities to help California federal energy managers cut costs and meet their renewables, energy efficiency and GHG emissions goals. In April 2011, Governor Jerry Brown approved the nation’s most ambitious renewable portfolio standard (RPS), which requires 33% of the state’s electricity to come from renewable energy sources by 2020. Policy changes that will support the RPS include expanded eligibility rules that fill previous gaps in incentives for certain sizes of on-site renewable energy systems. Program updates described in this document include: $200 million more in funding for California Solar Initiative rebates to commercial and industrial customers; an increase in the eligible system size for the Feed-In-Tariff (FIT) from 1.5MW to 3MW; and pending changes that may allow customer-side systems to sell tradable renewable energy credits (TRECs) to entities with RPS compliance obligations in California.

  20. WORKLOAD CHARACTERIZATION OF SPAM EMAIL FILTERING SYSTEMS

    Directory of Open Access Journals (Sweden)

    Yan Luo

    2010-01-01

    Full Text Available Email systems have suffered from degraded quality of service due to rampant spam, phishing and fraudulent emails. This is partly because the classification speed of email filtering systems falls far behindthe requirements of email service providers. We are motivated to address this issue from the perspective of computer architecture support. In this paper, as the first step towards novel architecture designs, we present extensive performance data collected from measurement and profiling experiments using representative email filtering systems including CRM114, DSPAM, SpamAssassin and TREC Bogofilter. We provide detailed analysis of the time consuming functions in the systems under study. We also show how the processor architecture parameters affect the performance of these email filters through simulation experiments.

  1. Undercooling and nodule count in thin walled ductile iron castings

    DEFF Research Database (Denmark)

    Pedersen, Karl Martin; Tiedje, Niels Skat

    2007-01-01

    Casting experiments have been performed with eutectic and hypereutectic castings with plate thick¬nesses from 2 to 8 mm involving both temperature measurements during solidification and micro¬structural examination afterwards. The nodule count was the same for the eutectic and hypereutectic...... castings in the thin plates ( 4.3 mm) while in the 8 mm plate the nodule count was higher in the hypereutectic than in the eutectic castings. The minimum temperature prior to the eutectic recalescence (Tmin) was 15 to 20C lower for the eutectic than the hypereutectic castings. This is due to nucleation...... of graphite nodules which begins at a lover temperature in the eutectic than in the hypereutectic castings The recalescence (Trec) was however also larger for the eutectic casting and in the thin plates the maximum temperature after recalescence (Tmax) was the same in the eutectic and hypereutectic...

  2. Undercooling and nodule count in thin walled ductile iron castings

    DEFF Research Database (Denmark)

    Pedersen, Karl Martin; Tiedje, Niels Skat

    2007-01-01

    Casting experiments have been performed with eutectic and hypereutectic castings with plate thicknesses from 2 to 8 mm involving both temperature measurements during solidification and microstructural examination afterwards. The nodule count was the same for the eutectic and hypereutectic castings...... in the thin plates (≤4.3 mm) while in the 8 mm plate the nodule count was higher in the hypereutectic than in the eutectic castings. The minimum temperature before the eutectic recalescence (Tmin) was 15 to 20ºC lower for the eutectic than for the hypereutectic castings. This is due to nucleation of...... graphite nodules which begins at a lower temperature in the eutectic than in the hypereutectic castings. The recalescence ∆Trec was however also larger for the eutectic casting and in the thin plates the maximum temperature after recalescence (Tmax) was the same in the eutectic and hypereutectic plates...

  3. EFFECTS OF PALM VITAMIN E SUPPLEMENTATION ON EXERCISE-INDUCED OXIDATIVE STRESS AND ENDURANCE PERFORMANCE IN THE HEAT

    Directory of Open Access Journals (Sweden)

    Chen Chee Keong

    2006-12-01

    Full Text Available This study investigates the effects of tocotrienol-rich palm vitamin E supplementation on exercise-induced lipid peroxidation and endurance performance in the heat. In a double blind, cross-over study, eighteen healthy, male recreational athletes completed two endurance running trials, until exhaustion, on a motorized treadmill at 70% VO2max on two separate occasions following a 6-week supplementation regimen of either tocotrienol-rich palm vitamin E (E or placebo (P. Both trials were conducted in the heat (31oC, 70% relative humidity. During the trials, rectal temperature (Trec, ratings of perceived exertion (RPE and oxygen uptake (VO2 were recorded. Blood samples were collected for the determination of plasma volume changes (PVC, malondialdehyde (MDA, creatine kinase (CK, total antioxidant status (TAS and vitamin E. After the supplementation regimen, serum alpha-tocopherol increased ~33% but serum concentrations of tocotrienols were negligible. No significant differences were evident in mean Trec, RPE, VO2 or in the time to exhaustion between the E-supplemented and the placebo- supplemented groups. Similarly, mean PVC, CK and TAS were also not different between the two groups. Resting plasma mean MDA concentration in the E-supplemented group was significantly lower than that in the placebo-supplemented group. At exhaustion, plasma mean MDA was higher than the resting values in both groups. Although tocotrienol-rich palm vitamin E supplementation decreased lipid peroxidation at rest and, to some extent, during exercise in the heat, as evident from the lower MDA levels, it however did not enhance endurance running performance or prevent exercise-induced muscle damage or influenced body core temperature or plasma volume changes during exercise in the heat

  4. Collaborative Approaches to Increase the Utility of Spatial Data for the Wildfire Management Community Through NASA's Applied Remote Sensing Training Program

    Science.gov (United States)

    McCullum, A. J. K.; Schmidt, C.; Blevins, B.; Weber, K.; Schnase, J. L.; Carroll, M.; Prados, A. I.

    2015-12-01

    The utility of spatial data products and tools to assess risk and effectively manage wildfires has increased, highlighting the need for communicating information about these new capabilities to decision makers, resource managers, and community leaders. NASA's Applied Remote Sensing Training (ARSET) program works directly with agencies and policy makers to develop in-person and online training courses that teach end users how to access, visualize, and apply NASA Earth Science data in their profession. The expansion of ARSET into wildfire applications began in 2015 with a webinar and subsequent in-person training hosted in collaboration with Idaho State University's (ISU) GIS Training and Research Center (TReC). These trainings featured presentations from the USDA Forest Service's Remote Sensing Training and Applications Center, the Land Processes DAAC, Northwest Nazarene University, NASA Goddard Space Flight Center, and ISU's GIS TReC. The webinar focused on providing land managers, non-governmental organizations, and international management agencies with an overview of 1) remote sensing platforms for wildfire applications, 2) products for pre- and post-fire planning and assessment, 3) the use of terrain data, 4) new techniques and technologies such as Unmanned Aircraft Systems and the Soil Moisture Active Passive Mission (SMAP), and 5) the RECOVER Decision Support System. This training highlighted online tools that engage the wildfire community through collaborative monitoring and assessment efforts. Webinar attendance included 278 participants from 178 organizations in 42 countries and 33 US states. The majority of respondents (93%) from a post-webinar survey indicated they displayed improvement in their understanding of specific remote-sensing data products appropriate for their work needs. With collaborative efforts between federal, state, and local agencies and academic institutions, increased use of NASA Earth Observations may lead to improved near real

  5. Vaccine-associated varicella and rubella infections in severe combined immunodeficiency with isolated CD4 lymphocytopenia and mutations in IL7R detected by tandem whole exome sequencing and chromosomal microarray.

    Science.gov (United States)

    Bayer, D K; Martinez, C A; Sorte, H S; Forbes, L R; Demmler-Harrison, G J; Hanson, I C; Pearson, N M; Noroski, L M; Zaki, S R; Bellini, W J; Leduc, M S; Yang, Y; Eng, C M; Patel, A; Rodningen, O K; Muzny, D M; Gibbs, R A; Campbell, I M; Shaw, C A; Baker, M W; Zhang, V; Lupski, J R; Orange, J S; Seeborg, F O; Stray-Pedersen, A

    2014-12-01

    In areas without newborn screening for severe combined immunodeficiency (SCID), disease-defining infections may lead to diagnosis, and in some cases, may not be identified prior to the first year of life. We describe a female infant who presented with disseminated vaccine-acquired varicella (VZV) and vaccine-acquired rubella infections at 13 months of age. Immunological evaluations demonstrated neutropenia, isolated CD4 lymphocytopenia, the presence of CD8(+) T cells, poor lymphocyte proliferation, hypergammaglobulinaemia and poor specific antibody production to VZV infection and routine immunizations. A combination of whole exome sequencing and custom-designed chromosomal microarray with exon coverage of primary immunodeficiency genes detected compound heterozygous mutations (one single nucleotide variant and one intragenic copy number variant involving one exon) within the IL7R gene. Mosaicism for wild-type allele (20-30%) was detected in pretransplant blood and buccal DNA and maternal engraftment (5-10%) demonstrated in pretransplant blood DNA. This may be responsible for the patient's unusual immunological phenotype compared to classical interleukin (IL)-7Rα deficiency. Disseminated VZV was controlled with anti-viral and immune-based therapy, and umbilical cord blood stem cell transplantation was successful. Retrospectively performed T cell receptor excision circle (TREC) analyses completed on neonatal Guthrie cards identified absent TREC. This case emphasizes the danger of live viral vaccination in severe combined immunodeficiency (SCID) patients and the importance of newborn screening to identify patients prior to high-risk exposures. It also illustrates the value of aggressive pathogen identification and treatment, the influence newborn screening can have on morbidity and mortality and the significant impact of newer genomic diagnostic tools in identifying the underlying genetic aetiology for SCID patients. PMID:25046553

  6. Comparação a longo prazo entre a facectomia extracapsular combinada à trabeculectomia e à facotrabeculectomia Longterm comparison between extracapsular cataract extraction combined with trabeculectomy and combined phacofiltration surgery

    Directory of Open Access Journals (Sweden)

    Carmo Mandia Jr.

    2002-12-01

    Full Text Available Objetivo: Comparar os resultados a longo prazo entre a cirurgia extracapsular da catarata combinada à trabeculectomia (FEC/TREC e a facotrabeculectomia (FACO/TREC. Métodos: Os prontuários de 46 pacientes (53 olhos submetidos à cirurgia combinada na Santa Casa de São Paulo entre janeiro de 1996 e novembro de 1999 foram revisados; dados relativos à pressão ocular (PO, acuidade visual (AV e número de medicações foram analisados. Resultados: Em ambos os grupos, após seguimento médio de 18 meses, a acuidade visual melhorou e a pressão ocular diminuiu em relação aos valores pré-operatórios (PPurpose: To compare the safety and efficacy of extracapsular cataract extraction (ECCE combined with trabeculectomy and combined phacoemulsification/trabeculectomy. Methods: The records of 46 patients (53 eyes who underwent combined glaucoma and cataract surgery at the Santa Casa de São Paulo between January 1996 and November 1999 were reviewed. Results: After a mean follow-up of 18 months, visual acuity improved and intraocular pressure decreased in both groups after surgery (P<0.05. In the phacofiltration group 55.5% of eyes achieved intraocular pressure < 22 mmHg without medication as compared to 46.1% in the extracapsular cataract extraction/trabeculectomy group (P=0.3. Conclusion: Both techniques proved to be safe and efficacious in the treatment of glaucoma and cataract. However, the phacofiltration surgery seems to promote lower intraocular pressure without additional medication in a larger number of eyes.

  7. Espectro polínico de amostras de mel de Apis mellifera L., coletadas na Bahia Pollen spectrum of samples of Apis mellifera L., honey collected in Bahia State, Brazil

    Directory of Open Access Journals (Sweden)

    AUGUSTA CAROLINA DE CAMARGO CARMELLO MORETI

    2000-01-01

    Full Text Available O espectro polínico encontrado em amostras de mel provenientes de seis municípios do Estado da Bahia foi analisado com o objetivo de contribuir para o conhecimento da flora visitada por Apis mellifera L. 1758 (Hymenoptera: ApidaeA identificação dos tipos polínicos foi feita por meio de literatura especializada e de informações de campo. Foram encontrados 43 tipos de pólen, sendo consideradas como dominantes as espécies Eucalyptus sp. (Myrtaceae, Mimosa verrucosa Benth. (Mimosaceae, M. scabrella Benth. (Mimosaceae e Bauhinia sp. (Caesalpiniaceae. Os tipos acessórios foram Alternanthera ficoidea R.Br. (Amaranthaceae, tipo Compositae (Asteraceae e Cecropia sp. (Moraceae. Destacou-se a participação de Mimosa sp. (Mimosaceae e de outras espécies silvestres na composição dos méis nos municípios considerados, registrando-se ainda a espécie Eucalyptus sp. (Myrtaceae como uma das principais fontes de alimento das abelhas dessa região.Pollen spectrum found in honey samples from six localities of Bahia State, Brazil, was analyzed with the objective to contribute for the knowledge of the plants used by Apis mellifera L., 1758 (Hymenoptera: Apidae. The identification of the pollen types was made by specialized literature and by field information. Two hundred pollen grains were studied in order to determine the percentage and the occurrence of each type. Forty three pollen types were identified, being considered as the predominant types Eucalyptus sp. (Myrtaceae, Mimosa verrucosa Benth. (Mimosaceae, M. scabrella Benth. (Mimosaceae and Bauhinia sp. (Caesalpiniaceae. The accessory pollen types were Alternanthera ficoidea R.Br. (Amaranthaceae, Compositae type (Asteraceae and Cecropia sp. (Moraceae. It is intense the participation of Mimosa sp. (Mimosaceae and other wild species in the honey composition of the six localities considered. Eucalyptus sp. (Myrtaceae is one of the dominant sources of bee food in some regions of Bahia State.

  8. Ethnomedicines used in Trinidad and Tobago for urinary problems and diabetes mellitus

    Directory of Open Access Journals (Sweden)

    Lans Cheryl A

    2006-10-01

    Full Text Available Abstract Background This paper is based on ethnobotanical interviews conducted from 1996–2000 in Trinidad and Tobago with thirty male and female respondents. Methods A non-experimental validation was conducted on the plants used for urinary problems and diabetes mellitus: This is a preliminary step to establish that the plants used are safe or effective, to help direct clinical trials, and to inform Caribbean physicians of the plants' known properties to avoid counter-prescribing. Results The following plants are used to treat diabetes: Antigonon leptopus, Bidens alba, Bidens pilosa, Bixa orellana, Bontia daphnoides, Carica papaya, Catharanthus roseus, Cocos nucifera, Gomphrena globosa, Laportea aestuans, Momordica charantia, Morus alba, Phyllanthus urinaria and Spiranthes acaulis. Apium graviolens is used as a heart tonic and for low blood pressure. Bixa orellana, Bontia daphnoides, Cuscuta americana and Gomphrena globosa are used for jaundice. The following plants are used for hypertension: Aloe vera, Annona muricata, Artocarpus altilis, Bixa orellana, Bidens alba, Bidens pilosa, Bonta daphnoides, Carica papaya, Cecropia peltata, Citrus paradisi, Cola nitida, Crescentia cujete, Gomphrena globosa, Hibiscus sabdariffa, Kalanchoe pinnata, Morus alba, Nopalea cochinellifera, Ocimum campechianum, Passiflora quadrangularis, Persea americana and Tamarindus indicus. The plants used for kidney problems are Theobroma cacao, Chamaesyce hirta, Flemingia strobilifera, Peperomia rotundifolia, Petiveria alliacea, Nopalea cochinellifera, Apium graveolens, Cynodon dactylon, Eleusine indica, Gomphrena globosa, Pityrogramma calomelanos and Vetiveria zizanioides. Plants are also used for gall stones and for cooling. Conclusion Chamaesyce hirta, Cissus verticillata, Kalanchoe pinnata, Peperomia spp., Portulaca oleraceae, Scoparia dulcis, and Zea mays have sufficient evidence to support their traditional use for urinary problems, "cooling" and high cholesterol

  9. Rasgos de historia de vida de especies pioneras en la Reserva Natural Ibanasca (Ibagué, Tolima, Colombia

    Directory of Open Access Journals (Sweden)

    Gómez Ruíz, Pilar Angélica

    2006-12-01

    Full Text Available Los rasgos de historia de vida (RHV son cualidades o atributos propios de cada individuo que representan
    respuestas en aspectos fisiológicos, morfológicos, anatómicos y ecológicos ante las condiciones ambientales
    presentes. En la Reserva Natural Ibanasca se seleccionaron 17 especies de plantas leñosas pioneras y en cada una se evaluaron 18 rasgos relacionados con las fases de dispersión, establecimiento y persistencia con el fin de establecer agrupaciones entre las especies. Con base en un Análisis de Conglomerados se obtuvieron cinco
    grupos en los análisis general y morfológico y cuatro grupos en el análisis de semilla. Además, se estableció
    las correlaciones entre algunas variables obteniendo que altura-área foliar y número de semillas por fruto-área
    foliar se correlacionaban positivamente. Solanum sycophanta, Croton magdalenesis y Brunellia colombiana se agruparon por ser las especies de mayor altura mientras que Inga sp. y Citharexylum subflavecens son las especies de semillas más grandes y pesadas, también están Montanoa quadrangularis y Bocconia frutescens como las especies de mayor tase relativa de crecimiento al tener las mayores áreas específicas foliares y siempre aparte se encontró a Cecropia cf. mutisiana por ser de las más altas, mayor área foliar y mayor producción de semillas. Con
    base en los resultados obtenidos se considera que los rasgos que mejor caracterizan a este grupo de especies son: abundante producción de semillas de fácil dispersión, tasa de crecimiento rápida representada en un área específica foliar grande, tamaños de hoja grandes manifestados en áreas foliares grandes, capacidad de
    regeneración vegetativa, abundante producción de hojarasca y ser heliófilas (tolerantes a la luz. Con base en
    lo anterior pueden proponerse las siguientes especies para una futura restauración ecológica de la Reserva:
    Cecropia cf. mutisiana, Bocconia

  10. A comparative phylogenetic analysis of full-length mariner elements isolated from the Indian tasar silkmoth, Antheraea mylitta (Lepidoptera: saturniidae)

    Indian Academy of Sciences (India)

    M Dharma Prasad; J Nagaraju

    2003-06-01

    Mariner like elements (MLEs) are widely distributed type II transposons with an open reading frame (ORF) for transposase. We studied comparative phylogenetic evolution and inverted terminal repeat (ITR) conservation of MLEs from Indian saturniid silkmoth, Antheraea mylitta with other full length MLEs submitted in the database. Full length elements from A. mylitta were inactive with multiple mutations. Many conserved amino acid blocks were identified after aligning transposase sequences. Mariner signature sequence, DD(34)D was almost invariable although a few new class of elements had different signatures. A. mylitta MLEs (Anmmar) get phylogenetically classified under cecropia subfamily and cluster closely with the elements from other Bombycoidea superfamily members implying vertical transmission from a common ancestor. ITR analysis showed a conserved sequence of AGGT(2-8N)ATAAGT for forward repeat and AGGT(2-8N)ATGAAAT for reverse repeat. These results and additional work may help us to understand the dynamics of MLE distribution in A. mylitta and construction of appropriate vectors for mariner mediated transgenics.

  11. Medicinal and ethnoveterinary remedies of hunters in Trinidad

    Directory of Open Access Journals (Sweden)

    Georges Karla

    2001-11-01

    Full Text Available Abstract Background Ethnomedicines are used by hunters for themselves and their hunting dogs in Trinidad. Plants are used for snakebites, scorpion stings, for injuries and mange of dogs and to facilitate hunting success. Results Plants used include Piper hispidum, Pithecelobium unguis-cati, Bauhinia excisa, Bauhinia cumanensis, Cecropia peltata, Aframomum melegueta, Aristolochia rugosa, Aristolochia trilobata, Jatropha curcas, Jatropha gossypifolia, Nicotiana tabacum, Vernonia scorpioides, Petiveria alliacea, Renealmia alpinia, Justicia secunda, Phyllanthus urinaria,Phyllanthus niruri,Momordica charantia, Xiphidium caeruleum, Ottonia ovata, Lepianthes peltata, Capsicum frutescens, Costus scaber, Dendropanax arboreus, Siparuma guianensis, Syngonium podophyllum, Monstera dubia, Solanum species, Eclipta prostrata, Spiranthes acaulis, Croton gossypifolius, Barleria lupulina, Cola nitida, Acrocomia ierensis (tentative ID. Conclusion Plant use is based on odour, and plant morphological characteristics and is embedded in a complex cultural context based on indigenous Amerindian beliefs. It is suggested that the medicinal plants exerted a physiological action on the hunter or his dog. Some of the plants mentioned contain chemicals that may explain the ethnomedicinal and ethnoveterinary use. For instance some of the plants influence the immune system or are effective against internal and external parasites. Plant baths may contribute to the health and well being of the hunting dogs.

  12. Late glacial and Holocene history of the dry forest area in south Colombian Cauca Valley from sites Quilichao and la Teta

    International Nuclear Information System (INIS)

    Two sedimentary cores with records of pollen and charcoal content within a chronology provided by radiocarbon are presented from the southern Cauca Valley in Colombia (1020 m). These records document the late glacial and Holocene dry forest vegetation, fire and environment history. Specifically, core Quilichao -1 (640 cm; 3 degrade 6' N, 76 degrade 31' W) represents the periods of 13/150-7720 14C yr BP and following a hiatus from 2880 14C yr BP to recent. Core la Teta - 2 (250 cm; 3 degrade 5' N, 76 degrade 32' W) provides a record from 8700 14C yr BP around 13/150 214C yr BP Quilichao shown an active late glacial drainage system and presence of dry forest. From 11/465-10/520 14C yr BP dry forest consists mainly of Crotalaria Moraceae Urticaceae, Melastomataceae, Piper and low stature trees, such as Acalypha, Alchornea, Cecropia and Celtis. At higher elevation on the slopes Andean forest with Quercus, Hedyosmum, Myrica and Alnus are common

  13. Vascular epiphytes as regeneration indicators of disturbed forests of the Colombian Amazon region

    International Nuclear Information System (INIS)

    In order to compare how the distribution and composition of vascular epiphytes varies, in three disturbed forests with different recovery times, and to verify whether these factors can indicate the regeneration state, three stubbles that had been abandoned during 12, 18 and 22 years were selected in the neighborhood of Leticia City (Amazons, Colombia). In each stubble 7 Cecropia sciadophylla (Cecropiaceae) individuals were selected, and a sampling of epiphytes was made in the first 3 m of each tree. The number of species, their abundance and covering were used as criteria to compare the three stubbles, because the sensitivity of epiphytes to environmental changes. The results show that the evaluated factors are useful for the characterization of the forest regeneration process. In spite of the fact that the number of species in the there stubbles was similar, the composition varied in such ways that about half the species of each stubble, were exclusive. The dominance of Monstera obliqua (Araceae) was evident, constituting more than 80% of the epiphytic covering of the total sample. The youngest stubble presented a denser covering and a high diversity index, whereas in the oldest stubbles these values diminish drastically

  14. Arboreal ants use the "Velcro(R principle" to capture very large prey.

    Directory of Open Access Journals (Sweden)

    Alain Dejean

    Full Text Available Plant-ants live in a mutualistic association with host plants known as "myrmecophytes" that provide them with a nesting place and sometimes with extra-floral nectar (EFN and/or food bodies (FBs; the ants can also attend sap-sucking Hemiptera for their honeydew. In return, plant-ants, like most other arboreal ants, protect their host plants from defoliators. To satisfy their nitrogen requirements, however, some have optimized their ability to capture prey in the restricted environment represented by the crowns of trees by using elaborate hunting techniques. In this study, we investigated the predatory behavior of the ant Azteca andreae which is associated with the myrmecophyte Cecropia obtusa. We noted that up to 8350 ant workers per tree hide side-by-side beneath the leaf margins of their host plant with their mandibles open, waiting for insects to alight. The latter are immediately seized by their extremities, and then spread-eagled; nestmates are recruited to help stretch, carve up and transport prey. This group ambush hunting technique is particularly effective when the underside of the leaves is downy, as is the case for C. obtusa. In this case, the hook-shaped claws of the A. andreae workers and the velvet-like structure of the underside of the leaves combine to act like natural Velcro that is reinforced by the group ambush strategy of the workers, allowing them to capture prey of up to 13,350 times the mean weight of a single worker.

  15. Insect herbivory in model tropical plant communities after 1. 5 years exposure to elevated CO[sub 2

    Energy Technology Data Exchange (ETDEWEB)

    Arnone, J.A. III; Zaller, J.G.; Korner, C.; Ziegler, C.; Zandt, H. (Univ. of Basal (Switzerland))

    1994-06-01

    Insect herbivores have been observed to practice compensatory feeding when providing leaves from plants grown under elevated atmospheric CO[sub 2]. This has been attributed to reductions in leaf quality (e.g. increased C:N ratio) occurring at high CO[sub 2]. However, no data are available on feeding patterns in plant communications exposed to high CO[sub 2], where insects can choose among species and canopy layers. We introduced 100 Spodoptera eridania larvae to each of four identically-planted communities of moist tropical species (80 plants, 7 spp.) after 1.5 years exposure to either ambient (340 [mu]l l[sup [minus]1]) or elevated (610 [mu]l l[sup [minus]1]) CO[sub 2]. Species representing contrasting life forms were installed in 6.7 m[sup 2] closed ecosystems, each with a common soil. Larvae actively fed in all communities, but the total amount of leaf area and leaf biomass consumed was similar at both CO[sub 2] levels. Elevated CO[sub 2] did alter herbivore plant-species preference. For example, 62.8% of the total leaf area consumed was represented by Cecropia peltata in communities exposed to ambient CO[sub 2], versus 44.1% under elevated CO[sub 2]. Our results indicate that compensatory feeding may not occur in natural plant communities in a CO[sub 2]-rich world.

  16. The potential sensitivity of tropical plants to increased ultraviolet-B radiation

    International Nuclear Information System (INIS)

    Little is known concerning the impact of stratospheric ozone depletion and increasing ultraviolet (UV)-B radiation on the phenology and growth of tropical plants. This is because, ostensibly, tropical plants are already exposed to relatively high levels of UV-B radiation (relative to a temperate environment) and should, therefore, possess a greater degree of tolerance to increased UV-B radiation. In this brief review I hope to show that, potentially, direct and indirect effects on photosynthesis, assimilate partitioning, phenology and biomass could occur in both tropical crops (e.g. cassava, rice) and native species (e.g. Cecropia obtusifolia (Bertol. Fl)., Tetramolopium humile (Gray), Nana sandwicensis L.). However, it should be noted that differences in sensitivity to UV-B radiation can be related to experimental conditions, and care should be taken to ensure that the quantity and quality of background solar radiation remains at near ambient conditions. Nevertheless, by integrating current and past studies on the impact of UV-B radiation on tropical species, I hope to be able to demonstrate that photosynthesis, morphology and growth in tropical plants could be directly affected by UV-B radiation and that UV-B radiation may be a factor in species and community dynamics in natural plant populations in the tropics

  17. Determination index of compatible vegetable species with the lines of electric power transmission

    International Nuclear Information System (INIS)

    With the purpose of designing methods to clearly identify which plant species generate electrical ground discharges in energy transmission line service corridors and thus avoid the frequent pruning of all Vegetation present in the corridors this study proposes and evaluates compatibility index of plant species with transmission lines, based on six variables: maximum height, growth form, ecological group, life zone, and abundance and frequency of each species. This index was tested in 20 plots of information was collected on all vascular plans present yielding 2147 individuals belonging to 485 species and 105 families, the most discriminating variables in the model were life zone and ecological group, based upon an analysis of principal components. This index applied to the 147 fully identified species with DBH = 2,5 cm showed that Cecropia peltata and Jacaranda copaia were the most problematic species for service lines. Furthermore, a catalogue was developed containing general information and a photographic record of some of the species considered as compatible as a reference for use during maintenance work

  18. Dieta de Traupíneos (Passeriformes, Emberizidae no Parque Estadual do Ibitipoca, Minas Gerais, Brasil Diet of Tanagers (Passeriformes, Emberizidae in Ibitipoca State Park, Minas Gerais, Brazil

    Directory of Open Access Journals (Sweden)

    Marco A. Manhães

    Full Text Available Eleven species of tanagers in Ibitipoca State Park, Minas Gerais, southeastern Brazil, were studied for 12 months and the birds diet was described. Fruits of 52 plant species were the main item consumed for all tanagers, representing 59.70% of all items in 1330 events, although different proportions in the use of this resource have been found among the bird species. The main plant families found were Myrtaceae with eight species accounting for 22.29% (n=177, and Melastomataceae with seven species accounting for 22.29% (n=177 of fruit intake. The most frequent plant species in the diet was Cecropia glaziovi Snethl. (Cecropiaceae, which made up 17.76% (n=141 of fruit intake of all species of tanagers. Arthropod consumption came second with 22.63% (n=301, but flowers, leaves, nectar, food remains left by tourists and galls were also represented. Several environmental features influenced diet composition. An Asteraceae, Vanillosmopsis erythropappa Schultz, very common in the park, was important for some birds as its flowers attracted arthropods and its branches and leaves were used as a substrate for insectivory. Fruit intake rate, some bird-plant interaction and features of food-handling were also discussed, pointing to the importance of these birds for the structure of the heterogeneous local landscape, possibly through the spread of seeds of different plant species.

  19. Tropical rain forest history from the Colombian pacific area: A 4200 - yr pollen record from Laguna Jotardo

    International Nuclear Information System (INIS)

    Pollen analysis of a 5-meter long core from Lake Jotardo, located in northern Choco biogeography area (5 degrade 48' N, 76 degrade 42' W) along the pacific coast of Colombia, shows the environmental history of the rain forest during the last 4200 years. Time control has been based on 7 AMS 14C dates ranging from 4230 to 365 14C yr BP. The period between 4230 to 4053 14C yr BP shows sandy deposits and river influence and represents at that time the initial phase of the lake. The composition of the rain forest was different compared to the last 1400 years. Pioneer taxa belonging to Cecropia, Melastomataceae/Combretaceae and Moraceae/Urticaceae dominated the forest. A 30-cm thick organic rich clay from 440 to 410 cm core depth spans a period of f600 years (from 4050 to 1450 14C yr BP), pointing to a hiatus in the sediment record, possibly caused by riverine erosion of previously deposited sediments. During the last 1400 years rain forest is characterised by Mauritiella, Euterpe/Geonoma, Iriartea, Pachira aquatica and Malpighiaceae. Floral composition of the rain forest is not constant. A biotic dynamics caused changes in the drainage system. The presence of human settlements during the last 1000 yrs is evidenced by Zea Mays and possibly also by the increase of palms

  20. Non-experimental validation of ethnoveterinary plants and indigenous knowledge used for backyard pigs and chickens in Trinidad and Tobago.

    Science.gov (United States)

    Lans, C; Georges, K; Brown, G

    2007-06-01

    This paper presents the findings of an exploratory study on ethnoveterinary medicines used for backyard pigs and backyard chickens in Trinidad and Tobago. Research data was collected from 1995 to September 2000. Six plants are used for backyard pigs. Crushed leaves of immortelle (Erythrina pallida, E. micropteryx) are used to remove dead piglets from the uterus. Leaf decoctions of bois canôt (Cecropia peltata) and bamboo (Bambusa vulgaris) are used for labour pains or leaves are fed as a postpartum cleanser. Boiled green papaya fruit (Carica papaya) is fed to pigs to induce milk let-down. The leaves and flowers of male papaya plants (Carica papaya) are fed to deworm pigs. Sour orange juice (Citrus aurantium) is given to pigs to produce lean meat, and coffee grounds are used for scours. Eyebright and plantain leaves (Plantago major) are used for eye injuries of backyard chickens. Worm grass (Chenopodium ambrosioides) and cotton bush (Gossypium species) are used as anthelmintics. Aloe gel (Aloe vera) is used for internal injuries and the yellow sap from the cut Aloe vera leaf or the juice of Citrus limonia is used to purge the birds. A literature review revealed few toxicity concerns and the potential usefulness of the plants. PMID:17944308

  1. Diet specialization selects for an unusual and simplified gut microbiota in two- and three-toed sloths.

    Science.gov (United States)

    Dill-McFarland, Kimberly A; Weimer, Paul J; Pauli, Jonathan N; Peery, M Zachariah; Suen, Garret

    2016-05-01

    Symbiotic microbial communities are critical to the function and survival of animals. This relationship is obligatory for herbivores that engage gut microorganisms for the conversion of dietary plant materials into nutrients such as short-chain organic acids (SCOAs). The constraint on body size imposed by their arboreal lifestyle is thought to make this symbiosis especially important for sloths. Here, we use next-generation sequencing to identify the bacteria present in the fore and distal guts of wild two- and three-toed sloths, and correlate these communities with both diet and SCOAs. We show that, unlike other mammalian herbivores, sloth gut communities are dominated by the bacterial phyla Proteobacteria and Firmicutes. Specifically, three-toed sloths possess a highly conserved, low-diversity foregut community with a highly abundant Neisseria species associated with foregut lactate. In contrast, two-toed sloths have a more variable and diverse foregut microbiota correlated with a variety of SCOAs. These differences support the hypothesis that feeding behaviour selects for specific gut bacterial communities, as three-toed sloths subsist primarily on Cecropia tree leaves while two-toed sloths have a more generalist diet. The less diverse diet and gut microbiota of three-toed sloths may render them more susceptible to habitat loss and other diet-altering conditions. PMID:26271635

  2. Correlação entre as atividades antiradical, antiacetilcolinesterase e teor de fenóis totais de extratos de plantas medicinais de farmácias vivas

    Directory of Open Access Journals (Sweden)

    S.M Morais

    2013-01-01

    Full Text Available O objetivo deste trabalho foi avaliar a correlação entre o conteúdo de fenóis de extratos de 18 plantas medicinais comuns nas Farmácias Vivas com a atividade sequestradora do radical livre DPPH e com a inibição da enzima acetilcolinesterase. Maiores conteúdos de fenóis totais foram encontrados nas plantas: Eugenia uniflora, Lippia alba, Lippia microphylla, Mentha x villosa, Ocimum gratissimum e Ocimum selloi. As espécies que apresentaram maior atividade antioxidante, semelhante a quercetina, foram: Spondias mombim, Malphigia glabra, L. alba e Croton zenhtneri,. As plantas Cecropia pachystachia, L. alba, L. microphylla, M. glabra, O. gratissimum e Plectranthus ornatus mostraram maiores halos de inibição da enzima acetilcolinesterase. Combinando as duas ações, as plantas mais ativas foram a M. glabra e a L. alba e somente a segunda correlaciona-se diretamente com o maior teor de fenóis totais. Através deste estudo, M. glabra e L. alba foram consideradas as plantas mais promissoras para estudos subsequentes a fim de encontrar novos compostos com ação potencial contra a doença de Alzheimer.

  3. Structured Ensemble Learning for Email Spam Filtering%结构化集成学习垃圾邮件过滤

    Institute of Scientific and Technical Information of China (English)

    刘伍颖; 王挺

    2012-01-01

    In order to resolve the conflicts between low computational complexity and high classification accuracy in email spam filtering algorithms, a structured ensemble learning idea is proposed within the multi-field learning framework, which combines the results of multiple base classifiers according to documental structures to pursue higher classification performance. Multiple light base classifiers are generated by string features of email documents, and a string-frequency index is used to store labeled data, which conduces to that the time cost of each updating or each searching is a constant level. According to the multi-field feature of email documents, two linear combination weights are proposed separately based on historical classification effectiveness of field classifiers and current classification contribution of field documents. Considering the historical classification effectiveness of field classifiers and the current classification contribution of field documents, a compound linear combination weight is proposed, which can improve overall classification accuracy. The experimental results on the TREC spam filtering task of immediate full feedback show that the compound-linear-combination-weight-based structured ensemble learning method can complete the filtering task in high speed (47. 24min) , whose overall performance \\~ROCA is comparable to the best one (0. 005 5) among the participators in the TREC 2007 spam track.%为了解决垃圾邮件过滤算法低计算复杂度与高分类准确率之间的矛盾,在多域学习框架下提出一种结构化集成学习思想,它根据文档结构组合多个基分类器的结果以追求更高分类性能.采用邮件文档的字符串特征生成多个轻量基分类器,并采用字符串-频率索引存储标注数据,使得每次更新和查询的时间开销是常数量级.根据邮件文档的多域结构特性,提出历史域分类器效力线性组合权和当前域文档分类能力线性组合权.综

  4. Measuring the Interestingness of Articles in a Limited User Environment

    Energy Technology Data Exchange (ETDEWEB)

    Pon, Raymond K. [Univ. of California, Los Angeles, CA (United States)

    2008-01-01

    Search engines, such as Google, assign scores to news articles based on their relevancy to a query. However, not all relevant articles for the query may be interesting to a user. For example, if the article is old or yields little new information, the article would be uninteresting. Relevancy scores do not take into account what makes an article interesting, which varies from user to user. Although methods such as collaborative filtering have been shown to be effective in recommendation systems, in a limited user environment, there are not enough users that would make collaborative filtering effective. A general framework, called iScore, is presented for defining and measuring the 'interestingness' of articles, incorporating user-feedback. iScore addresses various aspects of what makes an article interesting, such as topic relevancy, uniqueness, freshness, source reputation, and writing style. It employs various methods to measure these features and uses a classifier operating on these features to recommend articles. The basic iScore configuration is shown to improve recommendation results by as much as 20%. In addition to the basic iScore features, additional features are presented to address the deficiencies of existing feature extractors, such as one that tracks multiple topics, called MTT, and a version of the Rocchio algorithm that learns its parameters online as it processes documents, called eRocchio. The inclusion of both MTT and eRocchio into iScore is shown to improve iScore recommendation results by as much as 3.1% and 5.6%, respectively. Additionally, in TREC11 Adaptive Filter Task, eRocchio is shown to be 10% better than the best filter in the last run of the task. In addition to these two major topic relevancy measures, other features are also introduced that employ language models, phrases, clustering, and changes in topics to improve recommendation results. These additional features are shown to improve recommendation results by iScore by

  5. Measuring the Interestingness of Articles in a Limited User Environment Prospectus

    Energy Technology Data Exchange (ETDEWEB)

    Pon, R K

    2007-04-18

    Search engines, such as Google, assign scores to news articles based on their relevancy to a query. However, not all relevant articles for the query may be interesting to a user. For example, if the article is old or yields little new information, the article would be uninteresting. Relevancy scores do not take into account what makes an article interesting, which would vary from user to user. Although methods such as collaborative filtering have been shown to be effective in recommendation systems, in a limited user environment there are not enough users that would make collaborative filtering effective. I present a general framework for defining and measuring the ''interestingness'' of articles, called iScore, incorporating user-feedback including tracking multiple topics of interest as well as finding interesting entities or phrases in a complex relationship network. I propose and have shown the validity of the following: 1. Filtering based on only topic relevancy is insufficient for identifying interesting articles. 2. No single feature can characterize the interestingness of an article for a user. It is the combination of multiple features that yields higher quality results. For each user, these features have different degrees of usefulness for predicting interestingness. 3. Through user-feedback, a classifier can combine features to predict interestingness for the user. 4. Current evaluation corpora, such as TREC, do not capture all aspects of personalized news filtering systems necessary for system evaluation. 5. Focusing on only specific evolving user interests instead of all topics allows for more efficient resource utilization while yielding high quality recommendation results. 6. Multiple profile vectors yield significantly better results than traditional methods, such as the Rocchio algorithm, for identifying interesting articles. Additionally, the addition of tracking multiple topics as a new feature in iScore, can improve i

  6. The impact of immunosenescence on humoral immune response variation after influenza A/H1N1 vaccination in older subjects.

    Directory of Open Access Journals (Sweden)

    Iana H Haralambieva

    Full Text Available Although influenza causes significant morbidity and mortality in the elderly, the factors underlying the reduced vaccine immunogenicity and efficacy in this age group are not completely understood. Age and immunosenescence factors, and their impact on humoral immunity after influenza vaccination, are of growing interest for the development of better vaccines for the elderly.We assessed associations between age and immunosenescence markers (T cell receptor rearrangement excision circles - TREC content, peripheral white blood cell telomerase - TERT expression and CD28 expression on T cells and influenza A/H1N1 vaccine-induced measures of humoral immunity in 106 older subjects at baseline and three timepoints post-vaccination.TERT activity (TERT mRNA expression was significantly positively correlated with the observed increase in the influenza-specific memory B cell ELISPOT response at Day 28 compared to baseline (p-value=0.025. TREC levels were positively correlated with the baseline and early (Day 3 influenza A/H1N1-specific memory B cell ELISPOT response (p-value=0.042 and p-value=0.035, respectively. The expression and/or expression change of CD28 on CD4+ and/or CD8+ T cells at baseline and Day 3 was positively correlated with the influenza A/H1N1-specific memory B cell ELISPOT response at baseline, Day 28 and Day 75 post-vaccination. In a multivariable analysis, the peak antibody response (HAI and/or VNA at Day 28 was negatively associated with age, the percentage of CD8+CD28 low T cells, IgD+CD27- naïve B cells, and percentage overall CD20- B cells and plasmablasts, measured at Day 3 post-vaccination. The early change in influenza-specific memory B cell ELISPOT response was positively correlated with the observed increase in influenza A/H1N1-specific HAI antibodies at Day 28 and Day 75 relative to baseline (p-value=0.007 and p-value=0.005, respectively.Our data suggest that influenza-specific humoral immunity is significantly influenced by

  7. The use of ambient audio to increase safety and immersion in location-based games

    Science.gov (United States)

    Kurczak, John Jason

    The purpose of this thesis is to propose an alternative type of interface for mobile software being used while walking or running. Our work addresses the problem of visual user interfaces for mobile software be- ing potentially unsafe for pedestrians, and not being very immersive when used for location-based games. In addition, location-based games and applications can be dif- ficult to develop when directly interfacing with the sensors used to track the user's location. These problems need to be addressed because portable computing devices are be- coming a popular tool for navigation, playing games, and accessing the internet while walking. This poses a safety problem for mobile users, who may be paying too much attention to their device to notice and react to hazards in their environment. The difficulty of developing location-based games and other location-aware applications may significantly hinder the prevalence of applications that explore new interaction techniques for ubiquitous computing. We created the TREC toolkit to address the issues with tracking sensors while developing location-based games and applications. We have developed functional location-based applications with TREC to demonstrate the amount of work that can be saved by using this toolkit. In order to have a safer and more immersive alternative to visual interfaces, we have developed ambient audio interfaces for use with mobile applications. Ambient audio uses continuous streams of sound over headphones to present information to mobile users without distracting them from walking safely. In order to test the effectiveness of ambient audio, we ran a study to compare ambient audio with handheld visual interfaces in a location-based game. We compared players' ability to safely navigate the environment, their sense of immersion in the game, and their performance at the in-game tasks. We found that ambient audio was able to significantly increase players' safety and sense of immersion compared to a

  8. SKIMMR: facilitating knowledge discovery in life sciences by machine-aided skim reading.

    Science.gov (United States)

    Nováček, Vít; Burns, Gully A P C

    2014-01-01

    Background. Unlike full reading, 'skim-reading' involves the process of looking quickly over information in an attempt to cover more material whilst still being able to retain a superficial view of the underlying content. Within this work, we specifically emulate this natural human activity by providing a dynamic graph-based view of entities automatically extracted from text. For the extraction, we use shallow parsing, co-occurrence analysis and semantic similarity computation techniques. Our main motivation is to assist biomedical researchers and clinicians in coping with increasingly large amounts of potentially relevant articles that are being published ongoingly in life sciences. Methods. To construct the high-level network overview of articles, we extract weighted binary statements from the text. We consider two types of these statements, co-occurrence and similarity, both organised in the same distributional representation (i.e., in a vector-space model). For the co-occurrence weights, we use point-wise mutual information that indicates the degree of non-random association between two co-occurring entities. For computing the similarity statement weights, we use cosine distance based on the relevant co-occurrence vectors. These statements are used to build fuzzy indices of terms, statements and provenance article identifiers, which support fuzzy querying and subsequent result ranking. These indexing and querying processes are then used to construct a graph-based interface for searching and browsing entity networks extracted from articles, as well as articles relevant to the networks being browsed. Last but not least, we describe a methodology for automated experimental evaluation of the presented approach. The method uses formal comparison of the graphs generated by our tool to relevant gold standards based on manually curated PubMed, TREC challenge and MeSH data. Results. We provide a web-based prototype (called 'SKIMMR') that generates a network of inter

  9. Frutos e sementes consumidos pelo tambaqui, Colossoma macrompum (Cuvier, 1818 incorporados em rações: digestibilidade e velocidade de trânsito pelo trato gastrointestinal Fruits and seeds consumed by tambaqui (Colossoma macropomum, CUVIER, 1818 incorporated in the diets: gastrointestinal tract digestibility and transit velocity

    Directory of Open Access Journals (Sweden)

    Jorge Antonio Moreira da Silva

    2003-12-01

    Full Text Available O objetivo do presente trabalho foi estudar o efeito da incorporação de duas espécies de frutos e de duas espécies de sementes em uma dieta referência sobre a digestibilidade dos nutrientes e a velocidade de trânsito do alimento pelo trato gastrointestinal do tambaqui. Utilizando-se uma dieta de referência, 55% do fubá de milho foi substituído, em igual proporção, por farinhas elaboradas a partir do frutos jauari (Astrocaryum jauari e embaúba (Cecropia sp. e das sementes de munguba (Pseudobombax munguba e seringa barriguda (Hevea spruceana. Foram utilizados 15 tanques redondos de cimento amianto de 250 L, com circulação contínua de água e aeração permanente. Sessenta peixes de 1627±112,8 g de peso médio foram distribuídos nas unidades experimentais em grupos de quatro peixes. O delineamento experimental foi o inteiramente casualizado, com cinco tratamentos e três repetições. Os peixes receberam, durante o período experimental, duas refeições diárias, 9 e 16 h, até a saciedade. O tempo de trânsito foi calculado tomando-se o tempo de início da ingestão da dieta (T0 e o tempo do início do aparecimento das primeiras fezes com coloração verde (Tfinal, devido à presença de óxido de cromo (Cr2O3 incluído na ração como indicador inerte. Os peixes foram sacrificados por choque térmico a 4ºC. As amostras foram coletadas no estômago e em três partes do intestino. A incorporação de frutos e sementes alterou significativamente os teores dos nutrientes e os coeficientes de digestibilidade de todas as dietas experimentais. A composição das dietas influenciou significativamente o tempo de trânsito do alimento pelo trato gastrointestinal.A feeding trial was carried out to evaluate nutrient gastrointestinal digestibility and transit velocity in tambaqui fed two species of fruits and two species of seeds incorporated in a reference diet. In the reference diet, 55% of the yellow corn grain was replaced, in equal

  10. Banco de sementes de remanescentes naturais e de áreas reflorestadas em uma várzea do Rio Mogi-Guaçu - SP Seed bank of natural forest remainders and reforestation areas in a Mogi-Guaçu river floodplain, Luiz Antônio County, São Paulo State, Brazil

    Directory of Open Access Journals (Sweden)

    Assíria Maria Ferreira da Nóbrega

    2009-06-01

    Full Text Available Este estudo avaliou qualitativa e quantitativamente o banco de sementes de dois remanescentes florestais, de um povoamento de Eucalyptus robusta e de três áreas de reflorestamento com espécies nativas, localizados em uma várzea do rio Mogi-Guaçu, Luiz Antônio (21°31´S e 47°55´W, Estado de São Paulo, Brasil. Foram usadas 12 parcelas de 10 x 10 m distribuídas sistematicamente em cada área de estudo. Em cada parcela foram distribuídas aleatoriamente quatro subparcelas de 0,5 m x 0,5 m. Duas subparcelas foram usadas para coletar a serapilheira e duas para coletar o solo a 0-5 cm de profundidade. A amostragem foi realizada em setembro de 2001, nos remanescentes naturais e no povoamento de eucalipto e, em setembro de 2002, nas áreas reflorestadas. As amostras foram acondicionadas em vasos de plástico e incubadas com irrigações periódicas para a germinação das sementes por um período de sete meses, em dois ambientes de casa de vegetação: um a 100% de luz solar e outro sob tela com 70% de redução de luz solar. Na composição do banco de sementes de todas as áreas amostradas, houve predominância de espécies pioneiras dos primeiros estádios de sucessão. As espécies arbóreas mais importantes foram Aloysia virgata e Cecropia hololeuca. Os reflorestamentos com espécies nativas proporcionaram um banco de sementes com maior diversidade de espécies arbóreas nativas do que o povoamento de eucalipto. Este estudo indicou que a similaridade entre as florestas plantadas e as nativas deverá aumentar ao longo do tempo.The objective of this study was to evaluate qualitative and quantitatively the seed bank of two natural forest remainders, one Eucalyptus robusta plantation and three reforestation areas with native species, located in a riparian area of Mogi-Guaçu River floodplain, in Luiz Antonio County (21°31´S and 47°55´W, São Paulo State, Brazil. The evaluation was carried out in 12 plots of 10 x 10 m systematically

  11. Revision of the Neotropical spider genus Gephyroctenus (Araneae: Ctenidae: Calocteninae Revisão do gênero de aranhas neotropicais Gephyroctenus Mello-Leitão (Araneae: Ctenidae: Calocteninae

    Directory of Open Access Journals (Sweden)

    Daniele Polotow

    2008-12-01

    Full Text Available Gephyroctenus Mello-Leitão, 1936 (type species G. philodromoides Mello-Leitão, 1936 is revised. Three species formerly described in this genus are synonymized with species from other genera: G. kolosvaryi Caporiacco, 1947, with Acanthoctenus spinipes Keyserling, 1877, G. parvus Caporiacco, 1947, with Phymatoctenus comosus Simon, 1897, and G. vachoni Caporiacco, 1955, with Caloctenus gracilitarsis Simon, 1897. Eight new species are described: G. portovelho sp. nov., from the States of Rondônia and Amazonas, Brazil; G. divisor sp. nov. and G. acre sp. nov., from the State of Acre, Brazil; G. atininga sp. nov., G. esteio sp. nov. and G. mapia sp. nov., from the State of Amazonas, Brazil; G. juruti sp. nov., from the Department of Loreto, Peru and the State of Pará, Brazil; G. panguana sp. nov., from the Department of Huanuco, Peru. The genus can be distinguished by the presence of a cymbial retrolateral groove, retrolateral origin of embolus, embolus long and thin, median apophysis with a subdistal hook, and hyaline projection close to the embolus base in the male palp and by the fused median and lateral fields in a single epigynal plate, copulatory opening located dorsally in an atrium, and elongated copulatory ducts surrounding the spermathecae in the female epigynum. Field observations on the hunting behavior on ants in trumpet trees (Cecropia are provided for two species, G. philodromoides and G. mapia sp. nov.Gephyroctenus Mello-Leitão, 1936 (espécie-tipo G. philodromoides Mello-Leitão, 1936, é revisado. Três espécies descritas neste gênero são sinonimizadas com espécies de outros gêneros: G. kolosvaryi Caporiacco, 1947, com Acanthoctenus spinipes Keyserling, 1877, G. parvus Caporiacco, 1947, com Phymatoctenus comosus Simon, 1897, e G. vachoni Caporiacco, 1955, com Caloctenus gracilitarsis Simon, 1897. Oito novas espécies são descritas: G. portovelho sp. nov., dos Estados de Rondônia e Amazonas, Brasil; G. divisor sp. nov. e G

  12. Beneficial effect of medicinal plants on the contractility of post-hypoxic isolated guinea pig atria - Potential implications for the treatment of ischemic-reperfusion injury.

    Science.gov (United States)

    Bipat, Robbert; Toelsie, Jerry R; Magali, Indira; Soekhoe, Rubaina; Stender, Karin; Wangsawirana, Angelique; Oedairadjsingh, Krishan; Pawirodihardjo, Jennifer; Mans, Dennis R A

    2016-08-01

    Context Ischemic-reperfusion injury is accompanied by a decreased contractility of the myocardium. Positive-inotropic agents have proven useful for treating this condition but may exert serious side-effects. Objective In this study, aqueous preparations from Abelmoschus esculentus L. Moench (Malvaceae), Annona muricata L. (Annonaceae), Bixa orellana L. (Bixaceae), Cecropia peltata L. (Moraceae), Erythrina fusca Lour. (Fabaceae), Psidium guajava L. (Myrtaceae) and Terminalia catappa L. (Combretaceae) were evaluated for their ability to improve the decreased contractility of isolated guinea pig atria after hypoxic stress. Materials and methods Guinea pig atria isolated in Ringer-Locke buffer gassed with 100% O2 at 30 °C were exposed for 5 min to hypoxia, then allowed to recover in oxygenated buffer alone or containing a single plant extract (0.001-1 mg/mL). The contractility (g/s) and beating frequency (beats/min), as well as troponin C contents of the bathing solution (ng/mL), were determined and expressed as means ± SDs. Results The extracts of A. muricata, B. orellana, C. peltata and T. catappa caused an increase in the contractility compared to untreated atria of 340 ± 102%, 151 ± 13%, 141 ± 14% and 238 ± 44%, respectively. However, the latter two preparations increased the troponin C contents of the bathing solution to 36 ± 11 and 69 ± 33, compared to the value of 11 ± 3 ng/mL found with untreated atria. Conclusions Preparations from A. muricata and B. orellana may possess positive-inotropic properties which may improve the contractility of the post-hypoxic myocardium. Studies to assess their usefulness in ischemic-reperfusion injury are warranted. PMID:26730936

  13. ORIGEN GEOGRÁFICO Y BOTÁNICO DE MIELES DE Apis mellifera (APIDAE EN CUATRO DEPARTAMENTOS DE COLOMBIA

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    Guiomar Nates Parra

    2013-07-01

    Full Text Available El objetivo de este trabajo fue determinar marcadores palinológicos que permitieran caracterizar el origen geográfico y botánico de mieles provenientes de los departamentos de Boyacá, Cundinamarca, Santander y Magdalena. Se realizaron análisis melisopalinológicos de 184 muestras de miel procedentes de 131 apiarios. Se determinaron diferencias significativas entre tipos de mieles mediante un análisis discriminante y comparando la composición de especies entre las muestras. En total se encontraron 297 especies distribuidas en 69 familias, dentro de las cuales las más representativas fueron Mimosa sp., Cecropia sp., Eucalyptus sp., Piper sp. y Quercus humboldtii. Las familias más importantes fueron Fabaceae, Asteraceae,Myrtaceae, Rubiaceae, Fagaceae, y Melastomataceae. Se lograron determinar seis grupos de mieles diferenciadas por su origen geográfico: Altiplano Cundiboyacense, Medio Chicamocha, Sumapaz, Bajo Chicamocha, Sierra Nevada de Santa Marta y Provincia Comunera; también se encontraron diferencias entre las mieles de las regiones andinas y subandinas. Dentro de los tipos de mieles diferenciadas por origen botánico predominaron las mieles monoflorales de Trifolium pratense, Coffea arabica, Eucalyptus sp., Inga sp.y Heliocarpus americanus, mieles oligoflorales de asteráceas y mezclas de mielato de Q. humboldtii y néctar floral (Eucalyptus sp. tipo Brassicaceae, asteráceas. La información de este trabajo junto con la obtenida en análisis fisicoquímicos y sensoriales servirá de base para que los apicultores puedan solicitar la denominación de origen de estas mieles.

  14. Floristic composition and soil fertility in gold mining of Lavrinha, Pontes and Lacerda, MT, Brazil

    Directory of Open Access Journals (Sweden)

    Tatiani Botini Pires

    2011-12-01

    Full Text Available The mining activities cause intense environmental degradation, especially to the soil and vegetation. This study evaluated attributes of floristic composition and soil fertility in areas of open gold mining areas. One hundred plots of 10 × 10 m were distributed in the area effectively mined and in its surroundings. Stem circunference measures (AGC of all identified woody individuals with greater than or equal to 9 cm were taken at 0.3 m height above the ground. In all plots soil samples at 0-20 cm depth were collected for analysis of fertility attributes that are routinely evaluated. In total we observed the occurrence of 92 species and 43 families. The most abundant families were Myrtaceae, Fabaceae and Dilleniaceae; and families that had the greatest numbers of species were Fabaceae (10, Malpighiaceae (7 and Vochysiaceae (5. In the area effectively mined the species with higher importance value index (IVI were Curatella americana (89.1 Cecropia hololeuca (40.9, Roupala montana (12.5 and Pouteria ramiflora (10.2 while in surrounding of the mined area the species with the highest IVI were Myrcia multiflora (25.6, Caryocar brasiliense (15.7, Magonia pubescens (14.8 and Vatareia macrocarpa (14.4. In both areas, the soil had low pH, low availability of P, K+, Ca2+ and Mg2+ and high Al3+ saturation. In spite of the low soil fertility of the studied area, it was able to maintain an overall density of vegetation with AGC > 9 cm of 430 individuals per hectare in the effectively mined area and of 2,220 individuals per hectare in their surroundings.

  15. INVASIVE WEEDS IN BOGOR BOTANIC GARDENS, INDONESIA AND ITS IMPLICATION ON SURROUNDING LANDSCAPES

    Directory of Open Access Journals (Sweden)

    Edi Santosa

    2014-07-01

    Full Text Available Conservation areas with the objective for collection and exchange plant materials have been speculated as weed bank for surrounding areas. Objective of this study was to identify and characterize ruderal invasive weeds in the Bogor Botanic Gardens (BBG. Observations were conducted in all vak (collection blocks in the BBG in order to identify the weeds species, determine their invasiveness, dominance and distribution. Weeds associations with host plants were observed. Current weed control program and data of dead trees collection were analyzed in relevant to weed. Distribution of weeds outside BBG was observed by transects method following river and road directions. Results showed that there were seven invasive weeds, i.e., Cecropia adenopus (Cecropiaceae, Cissus nodosa Blume (Vitaceae, Cissus sicyoides Blume (Vitaceae, Dioscorea bulbifera L. (Dioscoreaceae, Ficus elastica Roxb. (Moraceae, Mikania micrantha H.B.K. (Asteraceae and Paraserianthes falcataria (L. Nielsen (Fabaceae. These seven weeds species invaded 41 out of 215 plant families in BBG. Six species of weeds, i.e., C. adenopus, C. nodosa Blume., C. sicyoides Blume., D. bulbifera L., M. micrantha H.B.K. and P. falcataria (L. Nielsen, were introduced as BBG collections for the first time while the F. elastica Roxb was considered as native. It is most likely that the weeds dispersal agents are the wind, birds, bats, visitors, and waters. All of these weeds existed in surrounding areas outside BBG. Given the detrimental impact of invasive weeds on the plant collection in BBG, it is necessary to develop long–term comprehensive control measures both inside and neighboring areas by involving other government authorities beyond BBG.

  16. Measurements of volatile organic compounds emitted from plants in the metropolitan area of São Paulo City , Brazil.

    Science.gov (United States)

    Carvalho, L.; Pisani, S.; Pool, C.; Vasconcellos, P.

    2003-04-01

    The presence of the biogenic hydrocarbons in an NO_x-containing atmosphere can enhance ozone generation and the impact of volatile organic compounds (VOCs) emitted from vegetation on atmospheric chemistry has been investigated. No study of VOC emission rates from plant species has been carried out in São Paulo City, Brazil, prior to this work. This study is part of a three-years project on biogenic volatile organic compounds emissions from species of plants found in the vegetation of the São Paulo metropolitan area. Typical plants (Alchornea sidifolia, Cupania oblongifolia, Cecropia pachystachia, Casearia sylvestris, Machaerium villosum, Croton floribundus, Myrcia rostrata, Solanum erianthum and Ficus insípida) were selected and identical species were studied in urban, sub-urban and forest regions. Biogenic hydrocarbons were determined placing branches of plants in enclosures and measuring the accumulation of emitted compounds in an all-Teflon chamber, the cuvette system. Measuring ambient VOC concentration adsorptive preconcentration, followed by GC-MS after thermal desorption of the sample, was employed to determine components heavier than C_5. Collection of carbonyl compounds on 2, 4-dinitrophenylhydrazine coated particles followed by HPLC-UV was used to analyze low molecular weight carbonyl compounds. Emissions rates of isoprene, a-pinene, camphene and limonene ranged from 0.01 to 2.16 μg C/h.g and emissions rates of aldehydes (C_1 - C_6), acrolein, methacrolein, 2-butanone and acetone ranged from 0.04 to 4.20 μg C/h.g. Ambient and chamber temperatures, relative humidity, light intensity, O_3 and NO_x were monitored during experiments.

  17. Evidence for exploitative competition: Comparative foraging behavior and roosting ecology of short-tailed fruit bats (Phyllostomidae)

    Science.gov (United States)

    Bonaccorso, F.J.; Winkelmann, J.R.; Shin, D.; Agrawal, C.I.; Aslami, N.; Bonney, C.; Hsu, A.; Jekielek, P.E.; Knox, A.K.; Kopach, S.J.; Jennings, T.D.; Lasky, J.R.; Menesale, S.A.; Richards, J.H.; Rutland, J.A.; Sessa, A.K.; Zhaurova, L.; Kunz, T.H.

    2007-01-01

    Chestnut short-tailed bats, Carollia castanea, and Seba's short-tailed bats, C. perspicillata (Phyllostomidae), were radio-tracked (N = 1593 positions) in lowland rain forest at Tiputini Biodiversity Station, Orellana Province, Ecuador. For 11 C. castanea, mean home range was 6.8 ?? 2.2 ha, mean core-use area was 1.7 ?? 0.8 ha, and mean long axis across home range was 438 ?? 106 m. For three C. perspicillata, mean home range was 5.5 ?? 1.7 ha, mean core-use area was 1.3 ?? 0.6 ha, and mean long axis was 493 ?? 172 m. Groups of less than five C. castanea occupied day-roosts in earthen cavities that undercut banks the Tiputini River. Carollia perspicillata used tree hollows and buildings as day-roosts. Interspecific and intraspecific overlap among short-tailed bats occurred in core-use areas associated with clumps of fruiting Piper hispidum (peppers) and Cecropia sciadophylla. Piper hispidum seeds were present in 80 percent of the fecal samples from C. castanea and 56 percent of samples from C. perspicillata. Carollia perspicillata handled pepper fruits significantly faster than C. castanea; however, C. castanea commenced foraging before C. perspicillata emerged from day-roosts. Evidence for exploitative competition between C. castanea and C. perspicillata is suggested by our observations that 95 percent of ripe P. hispidum fruits available at sunset disappear before sunrise (N = 74 marked fruits). Piper hispidum plants produced zero to 12 ripe infructescences per plant each night during peak production. Few ripe infructescences of P. hispidum were available during the dry season; however, ripe infructescences of C. sciadophylla, remained abundant. ?? 2007 The Author(s) Journal compilation ?? 2007 by The Association for Tropical Biology and Conservation.

  18. Changes in the delta 13C values of trees during a tropical rainy season: some effects in addition to diffusion and carboxylation by Rubisco?

    International Nuclear Information System (INIS)

    The delta 13C values of deciduous and evergreen tree leaves were compared in open and closed- canopy environments throughout a rainy season in Panama. Newly emerging leaves had higher delta 13C values than older leaves of all seedlings and trees al all dates sampled. This was apparently not caused by a decline in water use efficiency as leaves develop because instantaneous ci/ca was significantly higher in newly emerging than in expanded leaves on the same twigs of trees in the field as well as on seedlings growing in a controlled, unchanging environment. Higher delta 13C values in newly emerging leaves occurred across diverse environmental comparisons. For example, leaves emerging during the rainy season had higher delta 13C values than corresponding mature leaves that had emerged both during the dry season and when water was abundant. The early enrichment in 13C may thus reflect the translocation of carbon to initiate a new leaf. Furthermore, the lack of sensitivity of this enrichment to a microclimate suggests that it might be the result of processes that occur after carbon fixation by Rubisco. Other changes in delta 13C values as leaves developed may also have resulted from carbon translocation processes. Foliar delta 13C decreased significantly after most of the leaf biomass of the deciduous Apeiba membranacea had developed. The delta 13C values of the evergreen Cecropia insignia were lower in the open canopy than in closed-canopy forests at the end of the rainy season. These findings suggest that the delta 13C values of leaves can yield ecological information about the allocation of carbon within trees

  19. Early recruitment dynamics in tropical restoration.

    Science.gov (United States)

    de la Peña-Domene, Marinés; Martínez-Garza, Cristina; Howe, Henry F

    2013-07-01

    Unassisted secondary succession in abandoned tropical pastures often results in species-poor forests of pioneer trees that persist for decades. We characterize recruitment rates of woody vegetation in planting treatments during the first 60 months of experimental restoration on thin, eroded soils at Los Tuxtlas, southern Mexico. We test the hypothesis that recruitment of later-successional trees is greater in fenced plots planted with native trees than in fenced controls that simulate natural succession, and further that recruitment of such species would be greater in plots planted with animal-dispersed trees than in those planted with wind-dispersed trees. Results indicated much greater recruitment of later-successional animal-dispersed trees in planted plots as compared with controls. Three censuses per year recorded 960 recruited individuals of 44 species of trees and shrubs from 20-60 months after cattle exclusion. Ninety-six percent of recruits were not of planted species. Repeated-measures analyses of variance indicated that recruited communities included more species of pioneers than of later-successional trees and shrubs, with more individuals and species dispersed by animals than by wind. Recruitment of pioneers did not differ between control and planted plots. Later-successional recruits dispersed by animals accumulated > 10 times faster in planted than control plots, with apparent acceleration after planted Cecropia obtusifolia and Ficus yoponensis first produced fleshy fruits 48 months after cattle exclusion. Sparse later-successional wind-dispersed recruits did not differ by treatment. Our preliminary results over the first five years after cattle exclusion indicate that planted stands clearly accelerate succession through accumulation of later-successional trees and shrubs dispersed by animals. PMID:23967580

  20. Biodiversidad florística del Jardín Botánico de la Universidad Nacional de Ucayali

    Directory of Open Access Journals (Sweden)

    Víctor Araujo Abanto

    2015-12-01

    Full Text Available El objetivo fue la clasificación taxonómica y descripciones botánicas de 36 especies (23 familias y 33 géneros, árboles, arbustos, lianas y hierbas en el Jardín Botánico y Campus de la Universidad Nacional de Ucayali. De las 36 especies, 6 son ornamentales: Sanchezia tigrina, Crinum augustum, Sansevieria trifasciata, Dracaena fragans, Costus guanaiensis y Vitex cymosa; Rhynchosia phaseoloides cuyas semillas son cotizadas como artesanal; 7 podrían tener uso ornamental: Tabernaemontana heteropylla, Sparattosperma leucanthum, Cayaponia ophthalmica, Gurania eriantha, Gurania spinulosa, Stigmaphyllon florosum y Capirona decorticans; 3 son medicinales: Euphorbia umbellata (tratamiento del cáncer y otros males, Uncaria guianensis (refuerza el sistema inmunológico y Pilocarpus peruvianus contiene Pilocarpina de uso oftalmológico; Pourouma guianensis tiene fuerte olor a mentol; 3 con frutos alimenticios Tamarindus indica, Bunchosia armeniaca y Physalis angulata, conteniendo este último alto contenido en pro vitamina A; 10 son maderables: Dipteryx odorata, Vitex cymosa, Tectona grandis, Ocotea bofo, Perebea xanthochyma, Virola pavonis, Calycophyllum spruceanum, Capirona decorticans, Guazuma ulmifolia y Bambusa arundinacea; Pueraria phaseoloides usado como forraje, en el Jardín Botánico está como maleza al igual que Davilla nítida y Urena lobata, que podría servir como ornamental, su corteza tiene propiedades similares al yute verdadero; Cecropia membranácea, C. concolor, C. sciadophylla y Gouania lupuloides que pueden servir como alimento de la fauna silvestre.

  1. Holocene History of the Chocó Rain Forest from Laguna Piusbi, Southern Pacific Lowlands of Colombia

    Science.gov (United States)

    Behling, Hermann; Hooghiemstra, Henry; Negret, Alvaro José

    1998-11-01

    A high-resolution pollen record from a 5-m-long sediment core from the closed-lake basin Laguna Piusbi in the southern Colombian Pacific lowlands of Chocó, dated by 11 AMS 14C dates that range from ca. 7670 to 220 14C yr B.P., represents the first Holocene record from the Chocó rain forest area. The interval between 7600 and 6100 14C yr B.P. (500-265 cm), composed of sandy clays that accumulated during the initial phase of lake formation, is almost barren of pollen. Fungal spores and the presence of herbs and disturbance taxa suggest the basin was at least temporarily inundated and the vegetation was open. The closed lake basin might have formed during an earthquake, probably about 4400 14C yr B.P. From the interval of about 6000 14C yr B.P. onwards, 200 different pollen and spore types were identified in the core, illustrating a diverse floristic composition of the local rain forest. Main taxa are Moraceae/Urticaceae, Cecropia,Melastomataceae/Combretaceae, Acalypha, Alchornea,Fabaceae, Mimosa, Piper, Protium, Sloanea, Euterpe/Geonoma, Socratea,and Wettinia.Little change took place during that time interval. Compared to the pollen records from the rain forests of the Colombian Amazon basin and adjacent savannas, the Chocó rain forest ecosystem has been very stable during the late Holocene. Paleoindians probably lived there at least since 3460 14C yr B.P. Evidence of agricultural activity, shown by cultivation of Zea maissurrounding the lake, spans the last 1710 yr. Past and present very moist climate and little human influence are important factors in maintaining the stable ecosystem and high biodiversity of the Chocó rain forest.

  2. Plant-based medicines for anxiety disorders, Part 1: a review of preclinical studies.

    Science.gov (United States)

    Sarris, Jerome; McIntyre, Erica; Camfield, David A

    2013-03-01

    Research in the area of herbal psychopharmacology has revealed a variety of promising medicines that may provide benefit in the treatment of general anxiety and specific anxiety disorders. However, a comprehensive review of plant-based anxiolytics has been absent to date. This article (part 1) reviews herbal medicines for which only preclinical investigations for anxiolytic activity have been performed. In part 2, we review herbal medicines for which there have been clinical investigations for anxiolytic activity. An open-ended, language-restricted (English) search of MEDLINE (PubMed), CINAHL, Scopus and the Cochrane Library databases was conducted (up to 28 October 2012) using specific search criteria to identify herbal medicines that have been investigated for anxiolytic activity. This search of the literature revealed 1,525 papers, from which 53 herbal medicines were included in the full review (having at least one study using the whole plant extract). Of these plants, 21 had human clinical trial evidence (reviewed in part 2), with another 32 having solely preclinical studies (reviewed here in part 1). Preclinical evidence of anxiolytic activity (without human clinical trials) was found for Albizia julibrissin, Sonchus oleraceus, Uncaria rhynchophylla, Stachys lavandulifolia, Cecropia glazioui, Magnolia spp., Eschscholzia californica, Erythrina spp., Annona spp., Rubus brasiliensis, Apocynum venetum, Nauclea latifolia, Equisetum arvense, Tilia spp., Securidaca longepedunculata, Achillea millefolium, Leea indica, Juncus effusus, Coriandrum sativum, Eurycoma longifolia, Turnera diffusa, Euphorbia hirta, Justicia spp., Crocus sativus, Aloysia polystachya, Albies pindrow, Casimiroa edulis, Davilla rugosa, Gastrodia elata, Sphaerathus indicus, Zizyphus jujuba and Panax ginseng. Common mechanisms of action for the majority of botanicals reviewed primarily involve GABA, either via direct receptor binding or ionic channel or cell membrane modulation; GABA transaminase

  3. Characterization of the tre locus and analysis of trehalose cryoprotection in Lactobacillus acidophilus NCFM.

    Science.gov (United States)

    Duong, Tri; Barrangou, Rodolphe; Russell, W Michael; Klaenhammer, Todd R

    2006-02-01

    Freezing and lyophilization are common methods used for preservation and storage of microorganisms during the production of concentrated starter cultures destined for industrial fermentations or product formulations. The compatible solute trehalose has been widely reported to protect bacterial, yeast and animal cells against a variety of environmental stresses, particularly freezing and dehydration. Analysis of the Lactobacillus acidophilus NCFM genome revealed a putative trehalose utilization locus consisting of a transcriptional regulator, treR; a trehalose phosphoenolpyruvate transferase system (PTS) transporter, treB; and a trehalose-6-phosphate hydrolase, treC. The objective of this study was to characterize the tre locus in L. acidophilus and determine whether or not intracellular uptake of trehalose contributes to cryoprotection. Cells subjected to repeated freezing and thawing cycles were monitored for survival in the presence of various concentrations of trehalose. At 20% trehalose a 2-log increase in survival was observed. The trehalose PTS transporter and trehalose hydrolase were disrupted by targeted plasmid insertions. The resulting mutants were unable to grow on trehalose, indicating that both trehalose transport into the cell via a PTS and hydrolysis via a trehalose-6-phosphate hydrolase were necessary for trehalose fermentation. Trehalose uptake was found to be significantly reduced in the transporter mutant but unaffected in the hydrolase mutant. Additionally, the cryoprotective effect of trehalose was reduced in these mutants, suggesting that intracellular transport and hydrolysis contribute significantly to cryoprotection. PMID:16461669

  4. A multiple relevance feedback strategy with positive and negative models.

    Directory of Open Access Journals (Sweden)

    Yunlong Ma

    Full Text Available A commonly used strategy to improve search accuracy is through feedback techniques. Most existing work on feedback relies on positive information, and has been extensively studied in information retrieval. However, when a query topic is difficult and the results from the first-pass retrieval are very poor, it is impossible to extract enough useful terms from a few positive documents. Therefore, the positive feedback strategy is incapable to improve retrieval in this situation. Contrarily, there is a relatively large number of negative documents in the top of the result list, and it has been confirmed that negative feedback strategy is an important and useful way for adapting this scenario by several recent studies. In this paper, we consider a scenario when the search results are so poor that there are at most three relevant documents in the top twenty documents. Then, we conduct a novel study of multiple strategies for relevance feedback using both positive and negative examples from the first-pass retrieval to improve retrieval accuracy for such difficult queries. Experimental results on these TREC collections show that the proposed language model based multiple model feedback method which is generally more effective than both the baseline method and the methods using only positive or negative model.

  5. New Retrieval Method Based on Relative Entropy for Language Modeling with Different Smoothing Methods

    Institute of Scientific and Technical Information of China (English)

    Huo Hua; Liu Junqiang; Feng Boqin

    2006-01-01

    A language model for information retrieval is built by using a query language model to generate queries and a document language model to generate documents. The documents are ranked according to the relative entropies of estimated document language models with respect to the estimated query language model. Two popular and relatively efficient smoothing methods, the JelinekMercer method and the absolute discounting method, are used to smooth the document language model in estimation of the document language. A combined model composed of the feedback document language model and the collection language model is used to estimate the query model. A performacne comparison between the new retrieval method and the existing method with feedback is made,and the retrieval performances of the proposed method with the two different smoothing techniques are evaluated on three Text Retrieval Conference (TREC) data sets. Experimental results show that the method is effective and performs better than the basic language modeling approach; moreover, the method using the Jelinek-Mercer technique performs better than that using the absolute discounting technique, and the perfomance is sensitive to the smoothing paramters.

  6. Secrets of the Sediments: Using ANDRILL's Scientific Adventure on Ice to Transfer Climate Change Science to K-12 Audiences

    Science.gov (United States)

    Huffman, L. T.; Dahlman, L.; Frisch-Gleason, R.; Harwood, D.; Pound, K.; Rack, F.; Riesselman, C.; Trummel, E.; Tuzzi, E.; Winter, D.

    2008-12-01

    Antarctica's harsh environment and the compelling story of living and working there, provides the backdrop for hooking the interest of young learners on science research and the nature of science. By using the adventure stories of today's researcher-explorers, teachers accompanying the ANDRILL team have taken the technical science of drilling rock cores to understand the history of climate change and the advance and retreat of the Antarctic ice sheet, and translated it for non-technical audiences from K-12 school children, to adult community groups. In order to understand the important issues surrounding global climate change, members of the public need access to accurate and relevant information, high quality educational materials, and a variety of learning opportunities in different learning environments. By taking lessons learned from early virtual polar adventure learning expeditions like Will Steger's Trans-Antarctic Expedition, coupled with educators-in-the-field programs like TEA (Teachers Experiencing Antarctica and the Arctic), ARMADA and Polar Trec, ANDRILL's Education and Outreach Program has evolved into successful and far-reaching integrated education projects including 1) the ARISE (ANDRILL Research Immersion for Science Educators) Program, 2) Climate Change Student Summits, 3) the development of Flexhibit (flexible exhibit) teaching resources, 4) virtual online learning communities, and 5) partnering young researchers with teachers and classrooms. Formal evaluations indicate lasting interest in science studies on the part of students and an increase in teachers' scientific background knowledge.

  7. Spatially-resolved mid-infrared spectroscopy of IC 5063

    Directory of Open Access Journals (Sweden)

    S. Young

    2007-01-01

    Full Text Available N-band spectroscopy of the radio strong Seyfert 2 active galaxy IC 5063 (z=0.0110 was obtained using Gemini South in conjunc- tion with the Thermal-Region Camera Spec- trograph (T-ReCS; Telesco et al. 1998. T- ReCS uses a Raytheon 320x240 pixel SiAs IBC array, at a plate scale of 0.08900 pixel-1. The observations were conducted on the nights of UT 2005 July 7 and 9 using the standard chop-nod technique to remove the time-variable sky background, telescope ther- mal emission, and the so-called 1/f detector noise. A 0.6700 wide slit was used aligned along the position angle of the radio axis at 305o(Morganti et al. 1998 and close to the extended narrow line emission region (ENLR axis at 303_(Colina et al. 1991. The total on- source integration time was 1212 seconds.

  8. Idiopathic CD4+ T lymphopenia without autoimmunity or granulomatous disease in the slipstream of RAG mutations.

    Science.gov (United States)

    Kuijpers, Taco W; Ijspeert, Hanna; van Leeuwen, Ester M M; Jansen, Machiel H; Hazenberg, Mette D; Weijer, Kees C; van Lier, Rene A W; van der Burg, Mirjam

    2011-06-01

    A girl presented during childhood with a single course of extensive chickenpox and moderate albeit recurrent pneumonia in the presence of idiopathic CD4+ T lymphocytopenia (ICL). Her clinical condition remained stable over the past 10 years without infections, any granulomatous disease, or autoimmunity. Immunophenotyping demonstrated strongly reduced naive T and B cells with intact proliferative capacity. Antibody reactivity on in vivo immunizations was normal. T-cell receptor-Vβ repertoire was polyclonal with a very low content of T-cell receptor excision circles (TRECs). Kappa-deleting recombination excision circles (KRECs) were also abnormal in the B cells. Both reflect extensive in vivo proliferation. Patient-derived CD34+ hematopoietic stem cells could not repopulate RAG2(-/-)IL2Rγc(-/-) mice, indicating the lymphoid origin of the defect. We identified 2 novel missense mutations in RAG1 (p.Arg474Cys and p.Leu506Phe) resulting in reduced RAG activity. This report gives the first genetic clue for ICL and extends the clinical spectrum of RAG mutations from severe immune defects to an almost normal condition. PMID:21502542

  9. Monitoring every last trace

    CERN Multimedia

    CERN Bulletin

    2014-01-01

    The LHC is set to reach a record energy of 6.5 TeV per beam next year and will therefore be producing high energy radiation, as will the injectors supplying it. When exposed to this radiation, some equipment could potentially become radioactive and must therefore be carefully identified and monitored... this is where TREC comes in: software developed by CERN and currently being deployed in our accelerators.   If it becomes slightly radioactive, some of the equipment that makes up CERN’s accelerators may potentially become a hazard to the people who handle or work near it. Even though the risk is usually very low, CERN is obliged to record the location of this equipment, identify it and deal with it in an appropriate manner. During LS1 for example, almost 30,000 radiation protection checks were carried out on more than 2,500 tonnes of equipment! In 2009, going one step further in monitoring this equipment and making the Laboratory even safer, Luca Bruno, then the Radiation Safety Of...

  10. INFORMATION RETRIEVAL FOR SHORT DOCUMENTS

    Institute of Scientific and Technical Information of China (English)

    Qi Haoliang; Li Mu; Gao Jianfeng; Li Sheng

    2006-01-01

    The major problem of the most current approaches of information models lies in that individual words provide unreliable evidence about the content of the texts. When the document is short, e.g. only the abstract is available, the word-use variability problem will have substantial impact on the Information Retrieval (IR) performance. To solve the problem, a new technology to short document retrieval named Reference Document Model (RDM) is put forward in this letter. RDM gets the statistical semantic of the query/document by pseudo feedback both for the query and document from reference documents. The contributions of this model are three-fold: (1) Pseudo feedback both for the query and the document; (2) Building the query model and the document model from reference documents; (3) Flexible indexing units, which can be any linguistic elements such as documents, paragraphs, sentences, n-grams, term or character. For short document retrieval, RDM achieves significant improvements over the classical probabilistic models on the task of ad hoc retrieval on Text REtrieval Conference (TREC) test sets. Results also show that the shorter the document, the better the RDM performance.

  11. What Can Pictures Tell Us About Web Pages? Improving Document Search Using Images.

    Science.gov (United States)

    Rodriguez-Vaamonde, Sergio; Torresani, Lorenzo; Fitzgibbon, Andrew W

    2015-06-01

    Traditional Web search engines do not use the images in the HTML pages to find relevant documents for a given query. Instead, they typically operate by computing a measure of agreement between the keywords provided by the user and only the text portion of each page. In this paper we study whether the content of the pictures appearing in a Web page can be used to enrich the semantic description of an HTML document and consequently boost the performance of a keyword-based search engine. We present a Web-scalable system that exploits a pure text-based search engine to find an initial set of candidate documents for a given query. Then, the candidate set is reranked using visual information extracted from the images contained in the pages. The resulting system retains the computational efficiency of traditional text-based search engines with only a small additional storage cost needed to encode the visual information. We test our approach on one of the TREC Million Query Track benchmarks where we show that the exploitation of visual content yields improvement in accuracies for two distinct text-based search engines, including the system with the best reported performance on this benchmark. We further validate our approach by collecting document relevance judgements on our search results using Amazon Mechanical Turk. The results of this experiment confirm the improvement in accuracy produced by our image-based reranker over a pure text-based system. PMID:26357348

  12. Real-time relative qPCR without reference to control samples and estimation of run-specific PCR parameters from run-internal mini-standard curves.

    Directory of Open Access Journals (Sweden)

    Jens Magnus Bernth Jensen

    Full Text Available BACKGROUND: Real-Time quantitative PCR is an important tool in research and clinical settings. Here, we describe two new approaches that broaden the scope of real-time quantitative PCR; namely, run-internal mini standard curves (RIMS and direct real-time relative quantitative PCR (drqPCR. RIMS are an efficient alternative to traditional standard curves and provide both run-specific and target-specific estimates of PCR parameters. The drqPCR enables direct estimation of target ratios without reference to conventional control samples. METHODOLOGY/PRINCIPAL FINDINGS: In this study, we compared RIMS-based drqPCR with classical quantifications based on external standard curves and the "comparative Ct method". Specifically, we used a raw real-time PCR dataset as the basis for more than two-and-a-half million simulated quantifications with various user-defined conditions. Compared with classical approaches, we found that RIMS-based drqPCR provided superior precision and comparable accuracy. CONCLUSIONS/SIGNIFICANCE: The obviation of referencing to control samples is attractive whenever unpaired samples are quantified. This may be in clinical and research settings; for instance, studies on chimerism, TREC quantifications, copy number variations etc. Also, lab-to-lab comparability can be greatly simplified.

  13. Fatty acid composition of certain oil seeds from nigeria

    International Nuclear Information System (INIS)

    Fatty acids of certain oil seeds from Nigeria were determined by gas liquid chromatography and their identification was based on comparison by authentic samples. Seeds studied in this study were Aframomum danielli K. Schum, Arachidis hypogeal L., Glycine max L., Elaesis guineensis var. tenera, Piper guineense Thonn. ex Schumach and Treculia africana Decne. ex Trec. The fatty acid composition of the oil seeds showed that they (except E. guineensis) all contained more of unsaturated fatty acids ranging from 62.80% to 86.70% for P. guineense and A. hypogeal (L.), respectively. The oils with the exception of A. danielli (7.50%) and E. guineensis (3.30%) contained linoleic acid, which is an essential fatty acid with cholesterol-lowering activity in high amount in the range of 23.10% (A. hypogeae) to 34.10% (T. africana) with G. max, having the highest percentage of 56.40%. Four of the oils also contained linolenic acid in the range of 1.20% for A. danielli to 21.60% for P. guineense. (author)

  14. Query Performance Prediction for Information Retrieval Based on Covering Topic Score

    Institute of Scientific and Technical Information of China (English)

    Hao Lang; Bin Wang; Gareth Jones; Jin-Tao Li; Fan Ding; Yi-Xuan Liu

    2008-01-01

    We present a statistical method called Covering Topic Score (CTS) to predict query performance for information retrieval. Estimation is based on how well the topic of a user's query is covered by documents retrieved from a certain retrieval system. Our approach is conceptually simple and intuitive, and can be easily extended to incorporate features beyond bag-of-words such as phrases and proximity of terms. Experiments demonstrate that CTS significantly correlates with query performance in a variety of TREC test collections, and in particular CTS gains more prediction power benefiting from features of phrases and proximity of terms. We compare CTS with previous state-of-the-art methods for query performance prediction including clarity score and robustness score. Our experimental results show that CTS consistently performs better than, or at least as well as, these other methods. In addition to its high effectiveness, CTS is also shown to have very low computational complexity, meaning that it can be practical for real applications.

  15. Eukaryotic expression system Pichia pastoris affects the lipase catalytic properties: a monolayer study.

    Directory of Open Access Journals (Sweden)

    Madiha Bou Ali

    Full Text Available Recombinant DNA methods are being widely used to express proteins in both prokaryotic and eukaryotic cells for both fundamental and applied research purposes. Expressed protein must be well characterized to be sure that it retains the same properties as the native one, especially when expressed protein will be used in the pharmaceutical field. In this aim, interfacial and kinetic properties of native, untagged recombinant and tagged recombinant forms of a pancreatic lipase were compared using the monomolecular film technique. Turkey pancreatic lipase (TPL was chosen as model. A kinetic study on the dependence of the stereoselectivity of these three forms on the surface pressure was performed using three dicaprin isomers spread in the form of monomolecular films at the air-water interface. The heterologous expression and the N-His-tag extension were found to modify the pressure preference and decrease the catalytic hydrolysis rate of three dicaprin isomers. Besides, the heterologous expression was found to change the TPL regioselectivity without affecting its stereospecificity contrary to the N-tag extension which retained that regioselectivity and changed the stereospecificity at high surface pressures. The study of parameters, termed Recombinant expression Effects on Catalysis (REC, N-Tag Effects on Catalysis (TEC, and N-Tag and Recombinant expression Effects on Catalysis (TREC showed that the heterologous expression effects on the catalytic properties of the TPL were more deleterious than the presence of an N-terminal tag extension.

  16. Warm dusty discs: Exploring the A star 24um debris population

    CERN Document Server

    Smith, R

    2010-01-01

    (Abridged) Studies of debris discs have shown that most systems are analogous to the EKB. In this study we aim to determine how many IRAS 25um excesses towards A stars are real, and investigate where the dust lies. We observe with TIMMI2, VISIR, Michelle and TReCS a sample of A and B-type main sequence stars reported as having mid-IR excess. We constrain the location of the debris through combined modelling of the emission spectrum and a modelling technique designed to constrain the radial extent of emission in mid-IR imaging. We independently confirm the presence of warm dust around 3 of the candidates: HD3003, HD80950 and eta Tel. For the binary HD3003 a stability analysis indicates the dust is either circumstellar and lying at ~4 AU with the binary orbiting at >14AU, or the dust lies in an unstable location; there is some evidence for temporal evolution of its excess emission on a ~20 year timescale. For 7 of the targets we present quantitative limits on the location of dust around the star. We demonstrate...

  17. Stanovení poklesu tlaku napájecího čerpadla v závislosti na kmitání hladiny v napájecích nádržích

    OpenAIRE

    Sůkal, Jaroslav

    2009-01-01

    Bakalárská práce pojednává o základních rovnicích hydromechaniky. V práci je odvozená Eulerova rovnice hydrodynamiky a Bernoulliho rovnice. Zahrnuje rozbor proudení skutecných kapalin a nemalou cást venuje trecím ztrátám. V práci je popsán kmitavý pohyb mezi dvema spojenými nádobami. Tento jev je rešen pomocí Bernoulliho rovnice s nestacionárním clenem. Soucástí práce je odvození rovnice pro popis výchylky hladiny z rovnovážné polohy. Dále se venuje zjednodušenému rešení této rovnice. Na záve...

  18. Discovery of a candidate protoplanetary disk around the embedded source IRc9 in Orion

    CERN Document Server

    Smith, N; Smith, Nathan; Bally, John

    2005-01-01

    We report the detection of spatially-extended mid-infrared emission around the luminous embedded star IRc9 in OMC-1, as seen in 8.8, 11.7, and 18.3 micron images obtained with T-ReCS on Gemini South. The extended emission is asymmetric, and the morphology is reminiscent of warm dust disks around other young stars. The putative disk has a radius of roughly 1.5 arcsec (700 AU), and a likely dust mass of almost 10 Earth masses. The infrared spectral energy distribution of IRc9 indicates a total luminosity of about 100 Lsun, implying that it shall become an early A-type star when it reaches the main sequence. Thus, the candidate disk around IRc9 may be a young analog of the planetary debris disks around Vega-like stars and the disks of Herbig Ae stars, and may provide a laboratory in which to study the earliest phases of planet formation. A disk around IRc9 may also add weight to the hypothesis that an enhanced T Tauri-like wind from this star has influenced the molecular outflow from the OMC-1 core.

  19. A Memetic-Based Approach for Web-Based Question Answering

    Directory of Open Access Journals (Sweden)

    Iman Khodadi

    2014-08-01

    Full Text Available In this paper we proposed an evolutionary approach for answering open-domain factoid questions, which include searching among sentences that are candidate for the final answer with Memetic Algorithm (MA, and using lexical and syntactic features for calculating fitness of the sentences. Our main purpose is making a search engine with accurate answering ability, or a web-based Question Answering (QA system. The Text Retrieval Conference (TREC QA Tracks data are used to develop and evaluate the approach. The answering process begins with retrieving related documents from a search engine. Then, MA searches among all the sentences of these documents and finds the best one. Finally, one or more words will be extracted based on our hand-made patterns. The results of different approaches for local search, mutation, and crossover, and also different values for number of reproduction and retrieved documents are investigated in the empirical study section. The results are promising with sufficient retrieved documents, and we have obtained a threshold value for this variable. Using MA instead of examining all the sentences is a trade-off between lowering the process time and sacrificing the accuracy, but the results show that the Mametic-based approach is more efficient.

  20. Paclitaxel stimulates chromosomal fusion and instability in cells with dysfunctional telomeres: Implication in multinucleation and chemosensitization

    Energy Technology Data Exchange (ETDEWEB)

    Park, Jeong-Eun [Division of Radiation Cancer Research, Korea Institute of Radiological and Medical Sciences, Seoul 139-706 (Korea, Republic of); Woo, Seon Rang [Division of Radiation Cancer Research, Korea Institute of Radiological and Medical Sciences, Seoul 139-706 (Korea, Republic of); Department of Biochemistry, College of Medicine, Korea University, Seoul 136-705 (Korea, Republic of); Kang, Chang-Mo [Laboratory of Cytogenetics and Tissue Regeneration, Korea Institute of Radiological and Medical Sciences, Seoul 139-706 (Korea, Republic of); Juhn, Kyoung-Mi; Ju, Yeun-Jin; Shin, Hyun-Jin; Joo, Hyun-Yoo; Park, Eun Ran; Park, In-chul; Hong, Sung Hee; Hwang, Sang-Gu [Division of Radiation Cancer Research, Korea Institute of Radiological and Medical Sciences, Seoul 139-706 (Korea, Republic of); Lee, Jung-Kee [Department of Life Science and Genetic Engineering, Paichai University, Daejeon 302-735 (Korea, Republic of); Kim, Hae Kwon [Department of Biotechnology, Seoul Woman' s University, Seoul 139-774 (Korea, Republic of); Cho, Myung-Haing [Laboratory of Toxicology, College of Veterinary Medicine, Seoul National University, Seoul 151-74-2 (Korea, Republic of); Park, Gil Hong [Department of Biochemistry, College of Medicine, Korea University, Seoul 136-705 (Korea, Republic of); Lee, Kee-Ho, E-mail: khlee@kirams.re.kr [Division of Radiation Cancer Research, Korea Institute of Radiological and Medical Sciences, Seoul 139-706 (Korea, Republic of)

    2011-01-14

    Research highlights: {yields} Paclitaxel serves as a stimulator of chromosomal fusion in cells in which telomeres are dysfunctional. {yields} Typical fusions involve p-arms, but paclitaxel-induced fusions occur between both q- and p-arms. {yields} Paclitaxel-stimulated fusions in cells in which telomeres are dysfunctional evoke prolonged G2/M cell cycle arrest and delay multinucleation. {yields} Upon telomere erosion, paclitaxel promotes chromosomal instability and subsequent apoptosis. {yields} Chromosomal fusion enhances paclitaxel chemosensitivity under telomere dysfunction. -- Abstract: The anticancer effect of paclitaxel is attributable principally to irreversible promotion of microtubule stabilization and is hampered upon development of chemoresistance by tumor cells. Telomere shortening, and eventual telomere erosion, evoke chromosomal instability, resulting in particular cellular responses. Using telomerase-deficient cells derived from mTREC-/-p53-/- mice, here we show that, upon telomere erosion, paclitaxel propagates chromosomal instability by stimulating chromosomal end-to-end fusions and delaying the development of multinucleation. The end-to-end fusions involve both the p- and q-arms in cells in which telomeres are dysfunctional. Paclitaxel-induced chromosomal fusions were accompanied by prolonged G2/M cell cycle arrest, delayed multinucleation, and apoptosis. Telomere dysfunctional cells with mutlinucleation eventually underwent apoptosis. Thus, as telomere erosion proceeds, paclitaxel stimulates chromosomal fusion and instability, and both apoptosis and chemosensitization eventually develop.

  1. Tracking Multiple Topics for Finding Interesting Articles

    Energy Technology Data Exchange (ETDEWEB)

    Pon, R K; Cardenas, A F; Buttler, D J; Critchlow, T J

    2008-01-03

    We introduce multiple topic tracking (MTT) for iScore to better recommend news articles for users with multiple interests and to address changes in user interests over time. As an extension of the basic Rocchio algorithm, traditional topic detection and tracking, and single-pass clustering, MTT maintains multiple interest profiles to identify interesting articles for a specific user given user-feedback. Focusing on only interesting topics enables iScore to discard useless profiles to address changes in user interests and to achieve a balance between resource consumption and classification accuracy. iScore is able to achieve higher quality results than traditional methods such as the Rocchio algorithm. We identify several operating parameters that work well for MTT. Using the same parameters, we show that MTT alone yields high quality results for recommending interesting articles from several corpora. The inclusion of MTT improves iScore's performance by 25% in recommending news articles from the Yahoo! News RSS feeds and the TREC11 adaptive filter article collection. And through a small user study, we show that iScore can still perform well when only provided with little user feedback.

  2. Tracking Multiple Topics for Finding Interesting Articles

    Energy Technology Data Exchange (ETDEWEB)

    Pon, R K; Cardenas, A F; Buttler, D J; Critchlow, T J

    2007-02-15

    We introduce multiple topic tracking (MTT) for iScore to better recommend news articles for users with multiple interests and to address changes in user interests over time. As an extension of the basic Rocchio algorithm, traditional topic detection and tracking, and single-pass clustering, MTT maintains multiple interest profiles to identify interesting articles for a specific user given user-feedback. Focusing on only interesting topics enables iScore to discard useless profiles to address changes in user interests and to achieve a balance between resource consumption and classification accuracy. Also by relating a topic's interestingness to an article's interestingness, iScore is able to achieve higher quality results than traditional methods such as the Rocchio algorithm. We identify several operating parameters that work well for MTT. Using the same parameters, we show that MTT alone yields high quality results for recommending interesting articles from several corpora. The inclusion of MTT improves iScore's performance by 9% to 14% in recommending news articles from the Yahoo! News RSS feeds and the TREC11 adaptive filter article collection. And through a small user study, we show that iScore can still perform well when only provided with little user feedback.

  3. Infrared Observations of the Quintuplet Proper Members using SOFIA/FORCAST and Gemini/TReCS

    CERN Document Server

    Hankins, Matthew J; Morris, Mark R; Sanchez-Bermudez, Joel; Pott, Jörg-Uwe; Adams, Joseph D; Herter, Terry L

    2016-01-01

    Since their discovery, the Quintuplet proper members (QPMs) have been somewhat mysterious in nature. Originally dubbed the "cocoon stars" due to their cool featureless spectra, high-resolution near-infrared imaging observations have shown that at least two of the objects exhibit "pinwheel" nebulae consistent with binary systems with a carbon-rich Wolf-Rayet star and O/B companion. In this paper, we present 19.7, 25.2, 31.5, and 37.1 $\\mu$m observations of the QPMs (with an angular resolution of 3.2-3.8") taken with the Faint Object Infrared Camera for the SOFIA Telescope (FORCAST) in conjunction with high-resolution ($\\sim$0.1-0.2") images at 8.8 and 11.7 $\\mu$m from the Thermal-Region Camera Spectrograph (TReCS). DUSTY models of the thermal dust emission of two of the four detected QPMs, Q2 and Q3, are fitted by radial density profiles which are consistent with constant mass loss rates ($\\rho_d \\propto r^{-2}$). For the two remaining sources, Q1 and Q9, extended structures ($\\sim$ 1") are detected around the...

  4. Approximating Document Frequency with Term Count Values

    CERN Document Server

    Klein, Martin

    2008-01-01

    For bounded datasets such as the TREC Web Track (WT10g) the computation of term frequency (TF) and inverse document frequency (IDF) is not difficult. However, when the corpus is the entire web, direct IDF calculation is impossible and values must instead be estimated. Most available datasets provide values for term count (TC) meaning the number of times a certain term occurs in the entire corpus. Intuitively this value is different from document frequency (DF), the number of documents (e.g., web pages) a certain term occurs in. We conduct a comparison study between TC and DF values within the Web as Corpus (WaC). We found a very strong correlation with Spearman's rho >0.8 (p<0.005) which makes us confident in claiming that for such recently created corpora the TC and DF values can be used interchangeably to compute IDF values. These results are useful for the generation of accurate lexical signatures based on the TF-IDF scheme.

  5. Cognitiva (TC de Beck en una muestra costarricense

    Directory of Open Access Journals (Sweden)

    Hannia Cabezas Pizarro

    2006-01-01

    Full Text Available En este estudio se explora una posible relación empírica entre la terapia racional emotivoconductual (TREC de Ellis y la terapia cognitiva (TC de Beck, dos de los modelos más conspicuos en el campo de la psicoterapia cognitiva actual. Si bien este modelo utiliza el término “cognitivo” en forma tal que se encuentra asociado con el afecto, la fisiología y la conducta (Dobson, 1986, sostiene que las perturbaciones emocionales, en esencia, son causadas por el proceso cognitivo del individuo. En esta investigación, se trabajó con una muestra de 200 estudiantes de la Universidad de Costa Rica de diferentes áreas a quienes se les aplicaron las escalas de: Attitudes and Beliefs Inventory (ABI [Escala de Actitudes y Creencias], y el Beck Depression Inventory, 2ª edición (BDI-II [Inventario de Depresión de Beck], escalas que fueron adaptadas al español. El análisis estadístico de los datos confirma empíricamente la relación entre ambos modelos.

  6. Gene Ontology density estimation and discourse analysis for automatic GeneRiF extraction

    Directory of Open Access Journals (Sweden)

    Mottaz Anaïs

    2008-04-01

    Full Text Available Abstract Background This paper describes and evaluates a sentence selection engine that extracts a GeneRiF (Gene Reference into Functions as defined in ENTREZ-Gene based on a MEDLINE record. Inputs for this task include both a gene and a pointer to a MEDLINE reference. In the suggested approach we merge two independent sentence extraction strategies. The first proposed strategy (LASt uses argumentative features, inspired by discourse-analysis models. The second extraction scheme (GOEx uses an automatic text categorizer to estimate the density of Gene Ontology categories in every sentence; thus providing a full ranking of all possible candidate GeneRiFs. A combination of the two approaches is proposed, which also aims at reducing the size of the selected segment by filtering out non-content bearing rhetorical phrases. Results Based on the TREC-2003 Genomics collection for GeneRiF identification, the LASt extraction strategy is already competitive (52.78%. When used in a combined approach, the extraction task clearly shows improvement, achieving a Dice score of over 57% (+10%. Conclusions Argumentative representation levels and conceptual density estimation using Gene Ontology contents appear complementary for functional annotation in proteomics.

  7. Altitudinal variation in bumble bee (Bombus) critical thermal limits.

    Science.gov (United States)

    Oyen, K Jeannet; Giri, Susma; Dillon, Michael E

    2016-07-01

    Organism critical thermal limits are often tightly linked to current geographic distribution and can therefore help predict future range shifts driven by changing environmental temperatures. Thermal tolerance of diverse organisms often varies predictably with latitude, with upper thermal limits changing little and lower thermal limits decreasing with latitude. Despite similarly steep gradients in environmental temperatures across altitude, few studies have investigated altitudinal variation in critical thermal limits. We estimated critical thermal minimum (CTmin), critical thermal maximum (CTmax) and recovery temperature (Trec) by tracking righting response of three bumble bee species during thermal ramps: Bombus huntii collected from 2180m asl, and Bombus bifarius and Bombus sylvicola collected from 3290m asl in Wyoming, USA. Overall, larger bees could tolerate more extreme temperatures, likely due to a thermal inertia driven lag between core body temperatures and air temperatures. Despite their smaller size, high altitude bumble bees tolerated colder air temperatures: they had ~1°C lower CTmin and recovered from cold exposure at ~3-4°C lower air temperatures. Conversely, low altitude bees tolerated ~5°C hotter air temperatures. These altitudinal differences in thermal tolerance parallel differences in average daily minimum (1.2°C) and maximum (7.5°C) temperatures between these sites. These results provide one of the few measurements of organism thermal tolerance across altitude and the first evidence for geographical differences in tolerance of temperature extremes in heterothermic bumble bees. PMID:27264888

  8. The Mineralogy and Structure of the Inner Debris Disk of {\\beta} Pictoris

    CERN Document Server

    Li, Dan; Wright, Christopher M

    2012-01-01

    We observed the edge-on, planet-bearing disk of {\\beta} Pictoris using T-ReCS at Gemini to clarify and extend previous observations and conclusions about this unique system. Our spectroscopy and spectral modeling of the 10-micron silicate feature constrain the spatial distributions of three representative dust components (0.1-micron/2.0-micron glassy olivine and crystalline forsterite) across the inner 20-AU of the disk. We confirm that the 2.0-micron glassy olivine is strongly peaked in the disk center and that the 0.1-micron glassy olivine does not show this concentration, but rather is double peaked, with the peaks on either side of the star. However, we do not see the strong difference in brightness between those two peaks reported in a previous study. Although the spatial distribution of the 0.1-micron dust is consistent with the scenario of a dust-replenishing planetesimal belt embedded in the disk, we note an alternative interpretation that can explain the spatial distributions of the 0.1-micron and 2....

  9. High Performance Chinese Spam Filter%高性能中文垃圾邮件过滤器

    Institute of Scientific and Technical Information of China (English)

    齐浩亮; 程晓龙; 杨沐昀; 何晓宁; 李生; 雷国华

    2010-01-01

    设计并实现了基于在线过滤模式高性能中文垃圾邮件过滤器,能够较好地识别不断变化的垃圾邮件.以逻辑回归模型为基础,该文提出了字节级n元文法提取邮件特征,并采用TONE(Train On or Near Error)方法训练过滤器.在多个大规模中文垃圾邮件过滤公开评测数据上的实验结果表明,该文过滤器的性能在TREC 06C数据上优于当年评测的最好成绩,在SEWM 07立即反馈上1-ROCA值达到了0.0000%,并明显优于SEWM 08评测在线过滤任务中的所有其他方法.

  10. From the field to the classroom: Connecting climate research to classroom lessons

    Science.gov (United States)

    Brinker, R.; Steiner, S. M.; Coleman, L.

    2015-12-01

    Improving scientific literacy is a goal in the United States. Scientists from the United States are often expected to present research findings in ways that are meaningful and accessible to the general public, including K-12 students. PolarTREC - Teachers and Researchers Exploring and Collaborating, a program funded by the National Science Foundation, partners teachers with scientists in the Arctic and Antarctica. Teachers communicate the research to general audiences on a regular basis. After the field experience, they then create classroom-ready lessons to relay the science exploration into science curriculum. In this presentation, secondary level educators, will share their experiences with being part of field research teams in the Arctic and Antarctica, and their strategies for bringing current science research into the classroom and aligning lessons with Next Generation Science Standards (NGSS). Topics include an overview on using polar science to teach about climate change, application of field research techniques to improve students' understanding of scientific investigation methodology, phenology observations, soil porosity and permeability, litter decomposition, effect of sunlight on release of carbon dioxide from thawing permafrost, and understanding early life on Earth by studying stromatolites in Antarctica.

  11. Using your data for education and outreach

    Science.gov (United States)

    Lukes, L.

    2010-12-01

    Research data can be collected in different formats such as numerical measurements, photographs/video recordings, interviews, and other observations. Methods of using data for education and outreach can be equally varied: websites, online data manipulation labs, lesson plans for teachers, informational texts, lectures, teacher training workshops, and more. Selecting an effective method to use scientific data for educational and outreach activities can be confusing and time consuming. Several projects sponsored by National Science Foundation’s Office of Polar Programs (NSF OPP) will be used to illustrate strategies for: (1) developing online and print resources for students, teachers, and general public, (2) creating and organizing teacher professional development programs, and (3) making data publically available in an educator-friendly friendly manner. While the examples will be from polar data (ice core isotope levels, Greenland ice reflectance/albedo rates, Arctic and Antarctic atmospheric gas levels, snowfall and snowmelt rates, and snow depths) and programs like PolarTREC and International Polar Year, these methods can be applied to all areas of science.

  12. Increased levels of regulatory T cells (Tregs) in human immunodeficiency virus-infected patients after 5 years of highly active anti-retroviral therapy may be due to increased thymic production of naive Tregs

    DEFF Research Database (Denmark)

    Kolte, L.; Gaardbo, J.C.; Skogstrand, Kristin;

    2008-01-01

    Summary This study determines levels of regulatory T cells (T(regs)), naive T(regs), immune activation and cytokine patterns in 15 adult human immunodeficiency virus (HIV)-infected patients receiving prolonged highly active anti-retroviral therapy (HAART) who have known thymic output, and explores...... if naive T(regs) may represent recent thymic emigrant T(regs). HIV-infected patients treated with HAART with a median of 1 and 5 years were compared with healthy controls. Percentages of T(regs) (CD3(+)CD4(+)CD25(+)CD127(low)), naive T(regs) (CD3(+)CD4(+)CD25(+)CD45RA(+)) and activation markers (CD38......(+)human leucocyte antigen D-related) were determined by flow cytometry. Forkhead box P3 mRNA expression and T cell receptor excision circles (T(REC)) content in CD4(+) cells were determined by polymerase chain reaction and cytokines analysed with Luminex technology. Levels of T(regs) were significantly...

  13. Increased levels of regulatory T cells (T(regs)) in human immunodeficiency virus-infected patients after 5 years of highly active anti-retroviral therapy may be due to increased thymic production of naive T(regs)

    DEFF Research Database (Denmark)

    Kolte, L; Gaardbo, J C; Skogstrand, K;

    2008-01-01

    Summary This study determines levels of regulatory T cells (T(regs)), naive T(regs), immune activation and cytokine patterns in 15 adult human immunodeficiency virus (HIV)-infected patients receiving prolonged highly active anti-retroviral therapy (HAART) who have known thymic output, and explores...... if naive T(regs) may represent recent thymic emigrant T(regs). HIV-infected patients treated with HAART with a median of 1 and 5 years were compared with healthy controls. Percentages of T(regs) (CD3(+)CD4(+)CD25(+)CD127(low)), naive T(regs) (CD3(+)CD4(+)CD25(+)CD45RA(+)) and activation markers (CD38......(+)human leucocyte antigen D-related) were determined by flow cytometry. Forkhead box P3 mRNA expression and T cell receptor excision circles (T(REC)) content in CD4(+) cells were determined by polymerase chain reaction and cytokines analysed with Luminex technology. Levels of T(regs) were significantly...

  14. Increased levels of regulatory T cells (Tregs) in human immunodeficiency virus-infected patients after 5 years of highly active anti-retroviral therapy may be due to increased thymic production of naive Tregs

    DEFF Research Database (Denmark)

    Kolte, L.; Gaardbo, J.C.; Skogstrand, K.;

    2009-01-01

    This study determines levels of regulatory T cells (T(regs)), naive T(regs), immune activation and cytokine patterns in 15 adult human immunodeficiency virus (HIV)-infected patients receiving prolonged highly active anti-retroviral therapy (HAART) who have known thymic output, and explores if naive...... T(regs) may represent recent thymic emigrant T(regs). HIV-infected patients treated with HAART with a median of 1 and 5 years were compared with healthy controls. Percentages of T(regs) (CD3(+)CD4(+)CD25(+)CD127(low)), naive T(regs) (CD3(+)CD4(+)CD25(+)CD45RA(+)) and activation markers (CD38(+)human...... leucocyte antigen D-related) were determined by flow cytometry. Forkhead box P3 mRNA expression and T cell receptor excision circles (T(REC)) content in CD4(+) cells were determined by polymerase chain reaction and cytokines analysed with Luminex technology. Levels of T(regs) were significantly higher in...

  15. Linking ice core and climate research to the K-12 and broader community in Denali National Park, Alaska

    Science.gov (United States)

    Campbell, S. W.; Williams, K.; Marston, L.; Kreutz, K. J.; Osterberg, E. C.; Wake, C. P.

    2013-12-01

    For the past six years, a multi-institution effort has undertaken a broad glaciological and climate research project in Denali National Park. Most recently, two ~208 m long surface to bedrock ice cores were recovered from the Mt. Hunter plateau with supporting geophysical and weather data collected. Twenty two individuals have participated in the field program providing thousands of person-hours towards completing our research goals. Technical and scientific results have been disseminated to the broader scientific community through dozens of professional presentations and six peer-reviewed publications. In addition, we have pursued the development of interactive computer applications that use our results for educational purposes, publically available fact sheets through Denali National Park, and most recently, with assistance from PolarTREC and other affiliations, the development of a children's book and roll-out of K-8 science curriculum based on this project. The K-8 curriculum will provide students with an opportunity to use real scientific data to meet their educational requirements through alternative, interactive, and exciting methods relative to more standard educational programs. Herein, we present examples of this diverse approach towards incorporating polar research into K-12 STEM classrooms.

  16. Towards a medical question-answering system: a feasibility study.

    Science.gov (United States)

    Jacquemart, Pierre; Zweigenbaum, Pierre

    2003-01-01

    Question-answering (QA) systems, as have been presented and evaluated in several TREC conferences, are the next generation of search engines. They combine 'traditional' Information Retrieval (IR) with Natural Language Processing (NLP) and Knowledge Engineering techniques to provide shorter, more precise answers to natural language questions. We study here the feasibility of such a system for French in the health care domain. In this purpose, we collected a corpus of student questions in oral surgery. We examined two enabling conditions: on the IR side, how to select the right keywords in a question to identify relevant material on the Web for answering this question, a prerequisite for success; and on the NLP side, whether the contents of the questions fit the conceptual model of an existing QA prototype, a favorable condition for rapid implementation. A manual Web search enabled us to devise automatable principles for building IR queries for these questions. Besides, we could design a semantic model, using UMLS Semantic Network relations, which is consistent with our prototype and covers 90% of the questions. However, the high specialization of the domain and the clinical orientation of the questions, joined with the more limited resources online in the French language, may restrain the quantity of Web material available for answering these questions. PMID:14664030

  17. Mining Sequential Update Summarization with Hierarchical Text Analysis

    Directory of Open Access Journals (Sweden)

    Chunyun Zhang

    2016-01-01

    Full Text Available The outbreak of unexpected news events such as large human accident or natural disaster brings about a new information access problem where traditional approaches fail. Mostly, news of these events shows characteristics that are early sparse and later redundant. Hence, it is very important to get updates and provide individuals with timely and important information of these incidents during their development, especially when being applied in wireless and mobile Internet of Things (IoT. In this paper, we define the problem of sequential update summarization extraction and present a new hierarchical update mining system which can broadcast with useful, new, and timely sentence-length updates about a developing event. The new system proposes a novel method, which incorporates techniques from topic-level and sentence-level summarization. To evaluate the performance of the proposed system, we apply it to the task of sequential update summarization of temporal summarization (TS track at Text Retrieval Conference (TREC 2013 to compute four measurements of the update mining system: the expected gain, expected latency gain, comprehensiveness, and latency comprehensiveness. Experimental results show that our proposed method has good performance.

  18. Single molecule binding dynamics measured with atomic force microscopy

    International Nuclear Information System (INIS)

    We present a new method to analyse simultaneous Topography and RECognition Atomic Force Microscopy data such that it becomes possible to measure single molecule binding rates of surface bound proteins. We have validated this method on a model system comprising a S-layer surface modified with Strep-tagII for binding sites and strep-tactin bound to an Atomic Force Microscope tip through a flexible Poly-Ethylene-Glycol linker. At larger distances, the binding rate is limited by the linker, which limits the diffusion of the strep-tactin molecule, but at lateral distances below 3 nm, the binding rate is solely determined by the intrinsic molecular characteristics and the surface geometry and chemistry of the system. In this regime, Kon as determined from single molecule TREC data is in agreement with Kon determined using traditional biochemical methods. - Highlights: • We discuss the importance of studying single molecule binding rates for surface bound proteins. • We show measurements of single molecule binding rates on a model system using AFM. • We discuss the influence of various components on the measured binding rates

  19. A HIGH SPATIAL RESOLUTION MID-INFRARED SPECTROSCOPIC STUDY OF THE NUCLEI AND STAR-FORMING REGIONS IN LUMINOUS INFRARED GALAXIES

    International Nuclear Information System (INIS)

    We present a high spatial (diffraction-limited) resolution (∼0.''3) mid-infrared (MIR) spectroscopic study of the nuclei and star-forming regions of four local luminous infrared galaxies (LIRGs) using T-ReCS on the Gemini South telescope. We investigate the spatial variations of the features seen in the N-band spectra of LIRGs on scales of ∼100 pc, which allow us to resolve their nuclear regions and separate the active galactic nucleus (AGN) emission from that of the star formation (SF). We compare (qualitatively and quantitatively) our Gemini T-ReCS nuclear and integrated spectra of LIRGs with those obtained with Spitzer IRS. Star-forming regions and AGNs show distinct features in the MIR spectra, and we spatially separate these, which is not possible using the Spitzer data. The 9.7 μm silicate absorption feature is weaker in the nuclei of the LIRGs than in the surrounding regions. This is probably due to the either clumpy or compact environment of the central AGN or young, nuclear starburst. We find that the [Ne II]12.81 μm luminosity surface density is tightly and directly correlated with that of Paα for the LIRG star-forming regions (slope of 1.00 ± 0.02). Although the 11.3 μm PAH feature shows also a trend with Paα, this is not common for all the regions and the slope is significantly lower. We also find that the [Ne II]12.81 μm/Paα ratio does not depend on the Paα equivalent width (EW), i.e., on the age of the ionizing stellar populations, suggesting that, on the scales probed here, the [Ne II]12.81 μm emission line is a good tracer of the SF activity in LIRGs. On the other hand, the 11.3 μm PAH/Paα ratio increases for smaller values of the Paα EW (increasing ages), indicating that the 11.3 μm PAH feature can also be excited by older stars than those responsible for the Paα emission. Finally, more data are needed in order to address the different physical processes (age of the stellar populations, hardness and intensity of the radiation

  20. Effect of granulocyte colony-stimulating factor on murine thymic emigration and subsets reconstitution after a sublethal dose of irradiation

    International Nuclear Information System (INIS)

    Objective: To investigate the effects of recombinant human granulocyte colony stimulating factor (G-CSF) on murine thymic emigration and subsets reconstitution after a sublethal dose of irradiation. Methods: Female BALB/c mice were irradiated with a 6.0 Gy of γ-ray total-body irradiation and then randomly divided into GCSF group and control group. For mice in the GCSF group, recombinant human G-CSF 100 μg · kg-1 · d-1 was injected subcutaneously once daily for 14 continuous days and mice in the control group were given the same volume of phosphate buffered solution (PBS). At 7, 14, 21 and 28 days later, mice were killed and thymus mononuclear cell suspension were analyzed by flow cytometry for the percentage of the four stages of thymic CD4 - CD8 - double negative cells (DN1-4) and the CD4 + CD8 + double positive ( CD4 + CD8 + DP), CD4 + CD8 - single positive (CD4 + SP), CD4 - CD8 + single positive cells (CD8 + SP).Real-time PCR was used for detection and quantitation of murine T cell receptor rearrangement excision circles (sjTRECs) of the thymic cells of 30 and 60 d after irradiation. Results: The percentage of thymic DN1 cells in GCSF group was significantly higher than that of the control group 7 d after irradiation (t=9.59, P<0.05). 21 d later, the proportion of thymic DN3 and DN4 cells were higher than those of the control group (t=16.37, 7.6, P<0.05). The percentage of thymic CD4 + CD8 + DP cells decreased 7 d after irradiation,increased at 14 d, decreased again at 21 days,and then got a permanent recover. The percentage of thymic CD4 + CD8 + DP cells in the GCSF group recovered to normal and was significantly higher than that of the control group 28 days after irradiation (t=12.22, P<0.05). The percentage of thymic CD8 + SP cells of the GCSF group was significantly higher than that of the control group 21 d after irradiation (t=3.77, P<0.05), while G-CSF had no obvious influence on the percentage of the thymic CD4 + SP cells. The sjTRECs copies in the

  1. Resultados da associação trabeculotomia-trabeculectomia em pacientes não idosos Results of trabeculotomy-trabeculectomy in not elderly patients

    Directory of Open Access Journals (Sweden)

    Angelo Ferreira Passos

    2009-08-01

    Full Text Available Objetivo: Avaliar os resultados da associação trabeculotomia-trabeculectomia (Tro-Trec em pacientes de 12 a 50 anos, com glaucoma moderado ou avançado. Métodos: estudo prospectivo de 19 olhos de 13 pacientes, de 12 a 50 anos (média de 33,77 ± 11,43, submetidos à Tro-Trec e seguidos por 21,6 ± 7,2 (5,1 a 29,7 meses. Resultados: A pressão intraocular, (PIO média inicial de 32,03 ± 10,01 mmHg (variando de 12 a 50, foi reduzida para 9,42 mmHg ± 3,50 (2 e 16, com redução da medicação tópica de 1,47 ± 1,54 (0 a 4 para 0,16 ± 0,37 (0 a 1 medicamentos. A PIO alvo foi atingida em 15 (78,94% olhos. Houve acentuada redução da PIO mesmo em olhos sem bolhas significativas. O procedimento resultou em hipotonia persistente em três olhos. Conclusão: A cirurgia proposta foi eficaz. A acentuada redução da PIO em olhos sem bolhas significativas sugere que, na faixa etária analisada, a trabeculotomia isolada pode ser suficiente para controle da PIO em alguns pacientes. A incidência de hipotonia foi significativa, porém não superior à relacionada à trabeculectomia isolada, para a mesma faixa etária.Purpose: To evaluate the results of the trabeculotomy-trabeculectomy combined procedure in 12 to 50 years old patients with moderate and advanced glaucoma. Methods: Nineteen eyes of thirteen patients underwent a trabeculotomy-trabeculectomy procedure and were prospectively analyzed and followed up for 21,6 ± 7,2 (5,1 a 29,7 months. Results: IOP was reduced from 32,03 ± 10,01 (12 to 50 mmHg to 9,42 ± 3,50 (2 e 16 mmHg with the number of topical medications being reduced from 1,47 ± 1,54 (0 a 4 to 0,16 ± 0,37 (0 a 1. The target IOP was obtained in 15 of the eyes (78,94%. A great IOP reduction was obtained in eyes without significant blebs. Three eyes developed persistent hipotony. Conclusion: The procedure proved to be effective. The IOP reduction in eyes without significant blebs make us to infer that isolated trabeculotomy should be

  2. SKIMMR: facilitating knowledge discovery in life sciences by machine-aided skim reading

    Directory of Open Access Journals (Sweden)

    Vít Nováček

    2014-07-01

    Full Text Available Background. Unlike full reading, ‘skim-reading’ involves the process of looking quickly over information in an attempt to cover more material whilst still being able to retain a superficial view of the underlying content. Within this work, we specifically emulate this natural human activity by providing a dynamic graph-based view of entities automatically extracted from text. For the extraction, we use shallow parsing, co-occurrence analysis and semantic similarity computation techniques. Our main motivation is to assist biomedical researchers and clinicians in coping with increasingly large amounts of potentially relevant articles that are being published ongoingly in life sciences. Methods. To construct the high-level network overview of articles, we extract weighted binary statements from the text. We consider two types of these statements, co-occurrence and similarity, both organised in the same distributional representation (i.e., in a vector-space model. For the co-occurrence weights, we use point-wise mutual information that indicates the degree of non-random association between two co-occurring entities. For computing the similarity statement weights, we use cosine distance based on the relevant co-occurrence vectors. These statements are used to build fuzzy indices of terms, statements and provenance article identifiers, which support fuzzy querying and subsequent result ranking. These indexing and querying processes are then used to construct a graph-based interface for searching and browsing entity networks extracted from articles, as well as articles relevant to the networks being browsed. Last but not least, we describe a methodology for automated experimental evaluation of the presented approach. The method uses formal comparison of the graphs generated by our tool to relevant gold standards based on manually curated PubMed, TREC challenge and MeSH data. Results. We provide a web-based prototype (called ‘SKIMMR’ that

  3. IceBridge: Bringing a Field Campaign Home

    Science.gov (United States)

    Woods, J.; Beck, J.; Bartholow, S.

    2015-12-01

    IceBridge, a six-year NASA mission, is the largest airborne survey of Earth's polar ice ever flown. It will yield an unprecedented three-dimensional view of Arctic and Antarctic ice sheets, ice shelves and sea ice. These flights will provide a yearly, multi-instrument look at the behavior of the rapidly changing features of the Greenland and Antarctic ice. Data collected during IceBridge will help scientists bridge the gap in polar observations between NASA's Ice, Cloud and Land Elevation Satellite (ICESat) -- in orbit since 2003 -- and ICESat-2, planned for 2017. ICESat stopped collecting science data in 2009, making IceBridge critical for ensuring a continuous series of observations. IceBridge will use airborne instruments to map Arctic and Antarctic areas once a year at a minimum, with new campaigns being developed during the Arctic melt season. IceBridge flights are conducted in the spring and summer for the Arctic and in the fall over Antarctica. Other smaller airborne surveys around the world are also part of the IceBridge campaign. IceBridge actively engages the public and educators through a variety of outlets ranging from communications strategies through social media outlets, to larger organized efforts such as PolarTREC. In field activities include blog posts, photo updates, in flight chat sessions, and more intensive live events to include google hangouts, where field team members can interact with the public during a scheduled broadcast. The IceBridge team provides scientists and other team members with the training and support to become communicators in their own right. There is an exciting new initiative where IceBridge will be collaborating with Undergraduate and Graduate students to integrate the next generation of scientists and communicators into the Science Teams. This will be explored through partnerships with institutions that are interested in mentoring through project based initiatives.

  4. The Arctic Research Consortium of the United States (ARCUS): Connecting Arctic Research

    Science.gov (United States)

    Rich, R. H.; Wiggins, H. V.; Creek, K. R.; Sheffield Guy, L.

    2015-12-01

    This presentation will highlight the recent activities of the Arctic Research Consortium of the United States (ARCUS) to connect Arctic research. ARCUS is a nonprofit membership organization of universities and institutions that have a substantial commitment to research in the Arctic. ARCUS was formed in 1988 to serve as a forum for planning, facilitating, coordinating, and implementing interdisciplinary studies of the Arctic; to act as a synthesizer and disseminator of scientific information on arctic research; and to educate scientists and the general public about the needs and opportunities for research in the Arctic. ARCUS, in collaboration with the broader science community, relevant agencies and organizations, and other stakeholders, coordinates science planning and educational activities across disciplinary and organizational boundaries. Examples of ARCUS projects include: Arctic Sea Ice Outlook - an international effort that provides monthly summer reports synthesizing community estimates of the expected sea ice minimum. Sea Ice for Walrus Outlook - a resource for Alaska Native subsistence hunters, coastal communities, and others that provides weekly reports with information on sea ice conditions relevant to walrus in Alaska waters. PolarTREC (Teachers and Researchers Exploring and Collaborating) - a program whereby K-12 educators and researchers work together in hands-on field experiences in the Arctic and Antarctic to advance polar science education. ArcticInfo mailing list, Witness the Arctic newsletter, and the Arctic Calendar - communication tools for the arctic science community to keep apprised of relevant news, meetings, and announcements. Coordination for the Study of Environmental Arctic Change (SEARCH) program, which aims to provide scientific understanding of arctic environmental change to help society understand and respond to a rapidly changing Arctic. More information about these and other ARCUS activities can be found at the ARCUS website at

  5. A Semantic Searching Scheme in Heterogeneous Unstructured P2P Networks

    Institute of Scientific and Technical Information of China (English)

    Jun-Cheng Huang; Xiu-Qi Li; and Jie Wu

    2011-01-01

    Semantic-based searching in peer-to-peer (P2P) networks has drawn significant attention recently.A number of semantic searching schemes,such as GES proposed by Zhu Y et al.,employ search models in Information Retrieval (IR).All these IR-based schemes use one vector to summarize semantic contents of all documents on a single node.For example,GES derives a node vector based on the IR model:VSM (Vector Space Model).A topology adaptation algorithm and a search protocol are then designed according to the similarity between node vectors of different nodes.Although the single semantic vector is suitable when the distribution of documents in each node is uniform,it may not be efficient when the distribution is diverse.When there are many categories of documents at each node,the node vector representation may be inaccurate.We extend the idea of GES and present a new class-based semantic searching scheme (CSS) specifically designed for unstructured P2P networks with heterogeneous single-node document collection.It makes use of a state-of-the-art data clustering algorithm,online spherical k-means clustering (OSKM),to cluster all documents on a node into several classes.Each class can be viewed as a virtual node.Virtual nodes are connected through virtual links.As a result,the class vector replaces the node vector and plays an important role in the class-based topology adaptation and search process.This makes CSS very efficient.Our simulation using the IR benchmark TREC collection demonstrates that CSS outperforms GES in terms of higher recall,higher precision,and lower search cost.

  6. Expression of recombination-activating genes and T cell receptor gene recombination in the human T cell leukemia cell line

    Institute of Scientific and Technical Information of China (English)

    ZOU Hong-yun; MA Li; MENG Min-jie; YAO Xin-sheng; LIN Ying; WU Zhen-qiang; HE Xiao-wei; WANG Ju-fang; WANG Xiao-ning

    2007-01-01

    Background Recent studies have suggested that mature T cells can change their specificity through reexpression of recombination-activating genes (RAG) and RAG-mediated V(D)J recombination. This process is named receptor revision and has been observed in mature peripheral T cells from transgenic mice and human donors. However, whether the receptor revision in mature T cells is a random or orientated process remains poorly understood. Here we used the Jurkat human T cell line, which represents a mature stage of T cell development, as a model to investigate the regulation of T cell receptor (TCR) gene recombination.Methods TCR Dβ-Jβ signal joint T cell receptor excision DNA circles (sjTRECs) were determined by nested and seminested PCR. Double-strand DNA breaks at recombination signal sequences (RSSs) in the TCRVβ chain locus were detected by ligation-mediated-PCR. Further analysis of the complementarity-determining region 3 (CDR3) size of the TCRVβ chain was examined by the TCR GeneScan technique.Results RAG1, RAG2, and three crucial components of the nonhomologous DNA end-joining (NHEJ) pathway were readily detected in Jurkat. Characteristics of junctional diversity of Dβ2-Jβ2 signal joints and ds RSS breaks associated with the Dβ25' and Dβ 23' sites were detected in DNA from Jurkat cells. CDR3 size and the gene sequences of the TCRVβ chain did not change during cell proliferation.Conclusions RAG1 and RAG2 and ongoing TCR gene recombination are coexpressed in Jurkat cells, but the ongoing recombination process may not play a role in modification of the TCR repertoire. However, the results suggest that Jurkat could be used as a model for studying the regulation of RAGs and V(D)J recombination and as a "special" model of the coexistence of TCR gene rearrangements and "negative" receptor revision.

  7. Placental transfer of maternally-derived IgA precludes the use of guthrie card eluates as a screening tool for primary immunodeficiency diseases.

    Science.gov (United States)

    Borte, Stephan; Janzi, Magdalena; Pan-Hammarström, Qiang; von Döbeln, Ulrika; Nordvall, Lennart; Winiarski, Jacek; Fasth, Anders; Hammarström, Lennart

    2012-01-01

    There is a need for neonatal screening tools to improve the long-term clinical outcome of patients with primary immunodeficiency diseases (PID). Recently, a PCR-based screening method for both TRECs and KRECs using Guthrie card samples has been developed. However, the applicability of these excision circle assays is limited to patients with severe T or B cell lymphopenia (SCID, XLA and A-T), whereas the most common forms of PID are not detected. Absence of serum IgA is seen in a major fraction of patients with immunological defects. As serum IgA in newborns is considered to be of fetal origin, eluates from routinely collected dried blood spot samples might thus be suitable for identification of children with PID. To assess the applicability of such screening assays, stored Guthrie card samples were obtained from 47 patients with various forms of primary immunodeficiency diseases (SCID, XLA, A-T, HIGM and IgAD), 20 individuals with normal serum IgA levels born to IgA-deficient mothers and 51 matched healthy newborns. Surprisingly, normal serum IgA levels were found in all SCID, XLA, A-T and HIGM patients and, additionally, in all those IgAD patients born to IgA-sufficient mothers. Conversely, no serum IgA was found in any of the 16 IgAD patients born by IgA-deficient mothers. Moreover, half of the IgA-sufficient individuals born by IgA-deficient mothers also lacked IgA at birth whereas no IgA-deficient individuals were found among the controls. IgA in neonatal dried blood samples thus appears to be of both maternal and fetal origin and precludes its use as a reliable marker for neonatal screening of primary immunodeficiency diseases. PMID:22916257

  8. A new approach to sensitivity climatologies: the DTS-MEDEX-2009 campaign

    Directory of Open Access Journals (Sweden)

    A. Jansa

    2011-09-01

    Full Text Available Adaptive observation is an approach to improving the quality of numerical weather forecasts through the optimization of observing networks. It is sometimes referred to as Data Targeting (DT. This approach has been applied to high impact weather during specific field campaigns in the past decade. Adaptive observations may involve various types of observations, including either specific research observing platforms or routine observing platforms employed in an adaptive way. The North-Atlantic TReC 2003 and the EURORISK-PREVIEW 2008 exercises focused on the North-Atlantic and Western Europe areas using mainly routine observing systems. These campaigns also included Mediterranean cases.

    The most recent campaign, DTS-MEDEX-2009, is the first campaign in which the DT method has been used to address exclusively Mediterranean high impact weather events. In this campaign, which is an important stage in the MEDEX development, only operational radiosonde stations and commercial aircraft data (AMDAR have provided additional observations. Although specific diagnostic studies are needed to assess the impact of the extra-observations on forecast skill and demonstrate the effectiveness of DTS-MEDEX-2009, some preliminary findings can be deduced from a survey of this targeting exercise.

    After a description of the data targeting system and some illustrations of particular cases, this paper attempts some comparisons of additional observation needs (through effectively deployed radio-soundings with sensitivity climatologies in the Mediterranean. The first step towards a sensitivity climatology for Mediterranean cases of high impact weather is indirectly given by the frequency of extra-soundings launched from the network of radiosonde stations involved in the DTS-MEDEX-2009 campaign.

  9. Late-glacial and Holocene history of the dry forest area in the south Colombian Cauca Valley

    Science.gov (United States)

    Berrío, Juan Carlos; Hooghiemstra, Henry; Marchant, Robert; Rangel, Orlando

    2002-10-01

    Two sedimentary cores with pollen, charcoal and radiocarbon data are presented. These records document the Late-glacial and Holocene dry forest vegetation, fire and environmental history of the southern Cauca Valley in Colombia (1020 m). Core Quilichao-1 (640 cm; 3° 6N, 76° 31W) represents the periods of 13 150-7720 14C yr BP and, following a hiatus, from 2880 14C yr BP to modern. Core La Teta-2 (250 cm; 3° 5N, 76° 32W) provides a continuous record from 8700 14C yr BP to modern.Around 13 150 14C yr BP core Quilichao-1 shows an active Late-glacial drainage system and presence of dry forest. From 11 465 to 10 520 14C yr BP dry forest consists mainly of Crotalaria, Moraceae/Urticaceae, Melastomataceae/Combretaceae, Piper and low stature trees, such as Acalypha, Alchornea, Cecropia and Celtis. At higher elevation Andean forest comprising Alnus, Hedyosmum, Quercus and Myricachanged, with extensive open grass vegetation indicative of dry climatic conditions. This event may coincide with the change to cool and dry conditions in the second part of the El Abra stadial, an equivalent to the Younger Dryas. From 8850 climatic conditions relative to the present, these prevailing up to 2880

  10. Relative importance of bacteria and fungi in a tropical headwater stream: leaf decomposition and invertebrate feeding preference.

    Science.gov (United States)

    Wright, M S; Covich, A P

    2005-05-01

    Bacteria and fungi provide critical links between leaf detritus and higher trophic levels in forested headwater food webs, but these links in tropical streams are not well understood. We compared the roles of bacteria and fungi in the leaf decomposition process and determining feeding preference for two species of freshwater shrimp found in the Luquillo Experimental Forest, Puerto Rico, using experimental microcosms. We first tested the effects of four treatments on decomposition rates for leaves from two common riparian species, Cecropia scheberiana (Moraceae) and Dacryodes excelsa (Burseraceae), in laboratory microcosms. Treatments were designed to alter the microbial community by minimizing the presence of bacteria or fungi. The fastest decay rate was the control treatment for D. excelsa where both bacteria and fungi were present (k = -0.0073 day(-1)) compared to the next fastest rate of k = -0.0063 day(-1) for the bacterial-conditioned D. excelsa leaves. The fastest decay rate for C. scheberiana was also the control treatment (k = -0.0035 day(-1)), while the next fastest rate was for fungal-conditioned leaves (k = -0.0029 day(-1)). The nonadditive effect for leaf decomposition rates observed in the control treatments where both fungi and bacteria were present indicate that bacteria and fungi perform different functions in processing leaf litter. Additionally, leaf types differed in microbial colonization patterns. We next tested feeding preference for leaf type and microbe treatment in microcosms using two species of freshwater shrimp: Xiphocaris elongata, a shredder, and Atya lanipes, a scraper/filterer. To estimate feeding preferences of individual shrimp, we measured change in leaf surface area and the amount of particles generated during 5-day trials in 16 different two-choice combinations. X. elongata preferred D. excelsa over C. scheberiana, and leaves with microbial conditioning over leaves without conditioning. There was no clear preference for fungal

  11. Bosques montanos-relictos en Kañaris (Lambayeque, Perú

    Directory of Open Access Journals (Sweden)

    Santos Llatas-Quiroz

    2013-05-01

    Full Text Available En Kañaris (Lambayeque se encuentran grandes bosques relictos, probablemente los mayores de la vertiente occidental de los Andes peruanos. Actualmente están muy bien conservados, pero al mismo tiempo es la zona botánicamente menos estudiada de todos los bosques relictos de la zona. Estos bosques se ubican en las alturas de Upaypiteq y adyacentes a los flancos de la cordillera occidental de los Andes en la vertiente del Atlántico: Shin Shin, San Lorenzo, Huacapampa, Pandachí, Gramalote, Walte, Mollepampa; entre los 1500 a 3000 m sobre el nivel del mar, en el distrito de Kañaris (2300 m y los bosques de Chiñama y Luto en la vertiente del Pacífico. La presente investigación se emprendió con el objeto de estudiar científicamente, mediante muestreos florísticos, la vida y estructura de los componentes de los bosques de Upaypiteq. Las muestras conducen a un avance de la investigación, determinando que los principales componentes arbóreos corresponden a las Lauráceas: Persea, Ocotea y Nectandra, Cunoniáceas: Weinmannia, Podocarpáceas: Podocarpus, Cecropiáceas: Cecropia, Mirtáceas: Myrcianthes, Moráceas: Ficus, Rubiáceas: Cinchona, Bignoniáceas: Tabebuia, Arecáceas: Ceroxylon y, helechos arborescentes del género Nephelea. Circundantes a la masa boscosa se encuentran varias especies de arbustos, de los géneros Miconia, Munnozia, Baccharis, Senna, Colignonia, Gaiadendron, Oreopanax, etc.; también en la estructura es muy frecuente las epífitas y lianas ascendentes: Bromeliáceas, Orquídeas, Heliconias, Aráceas, musgos. Los helechos herbáceos, hongos, líquenes gelatinosos, hepáticas, Balanoforáceas y Begonias, tapizan por completo el piso boscoso. La composición florística es similar al bosque de Cutervo y los bosques de la Vertiente Oriental de los Andes, que a los demás bosques relictos en la Vertiente Occidental. La presencia de estos bosques se debe preservar, por su importancia en los procesos ecológicos para la

  12. Screening for antimicrobial activity of ten medicinal plants used in Colombian folkloric medicine: A possible alternative in the treatment of non-nosocomial infections

    Directory of Open Access Journals (Sweden)

    Ocampo Saul A

    2006-02-01

    Full Text Available Abstract Background The antimicrobial activity and Minimal Inhibitory Concentration (MIC of the extracts of Bidens pilosa L., Bixa orellana L., Cecropia peltata L., Cinchona officinalis L., Gliricidia sepium H.B. & K, Jacaranda mimosifolia D.Don, Justicia secunda Vahl., Piper pulchrum C.DC, P. paniculata L. and Spilanthes americana Hieron were evaluated against five bacteria (Staphylococcus aureus, Streptococcus β hemolític, Bacillus cereus, Pseudomonas aeruginosa, and Escherichia coli, and one yeast (Candida albicans. These plants are used in Colombian folk medicine to treat infections of microbial origin. Methods Plants were collected by farmers and traditional healers. The ethanol, hexane and water extracts were obtained by standard methods. The antimicrobial activity was found by using a modified agar well diffusion method. All microorganisms were obtained from the American Type Culture Collection (ATCC. MIC was determined in the plant extracts that showed some efficacy against the tested microorganisms. Gentamycin sulfate (1.0 μg/ml, clindamycin (0.3 μg/ml and nystatin (1.0 μg/ml were used as positive controls. Results The water extracts of Bidens pilosa L., Jacaranda mimosifolia D.Don, and Piper pulchrum C.DC showed a higher activity against Bacillus cereus and Escherichia coli than gentamycin sulfate. Similarly, the ethanol extracts of all species were active against Staphylococcus aureus except for Justicia secunda. Furthermore, Bixa orellana L, Justicia secunda Vahl. and Piper pulchrum C.DC presented the lowest MICs against Escherichia coli (0.8, 0.6 and 0.6 μg/ml, respectively compared to gentamycin sulfate (0.9 8g/ml. Likewise, Justicia secunda and Piper pulchrum C.DC showed an analogous MIC against Candida albicans (0.5 and 0.6 μg/ml, respectively compared to nystatin (0.6 μg/ml. Bixa orellana L, exhibited a better MIC against Bacillus cereus (0.2 μg/ml than gentamycin sulfate (0.5 μg/ml. Conclusion This in vitro study

  13. Fontes e concentrações de águas de fumaça na germinação de sementes e no vigor de plântulas de tomate Sources and concentrations of smoke-water on the seed germination and seedling vigor of tomato

    Directory of Open Access Journals (Sweden)

    Yêda Maria BC Arruda

    2012-06-01

    Full Text Available A fumaça e a fumaça diluída em água, conhecida como água de fumaça, podem ser utilizadas como estimuladores tanto da germinação das sementes quanto do vigor das plântulas de várias espécies silvestres e cultivadas. O objetivo neste trabalho foi verificar a eficácia de águas de fumaça, oriundas de diferentes matérias-primas e concentrações, na germinação de sementes e vigor de plântulas de tomate. Foram usadas 10 matérias-primas e para cada uma foram testados um controle (água destilada e oito concentrações da água de fumaça (1:5.000, 1:2.500, 1:1.000, 1:100, 1:50, 1:25, 1:10 e 1:2,5 v:v, constituindo nove tratamentos, que foram repetidos oito vezes e distribuídos seguindo o delineamento experimental inteiramente casualizado. Os testes germinativos foram conduzidos no laboratório e as variáveis foram avaliadas após cinco dias da semeadura. Com a exceção de uma fonte, todas as matérias-primas testadas causaram, com a maior concentração testada (1:2,5, inibição na germinação das sementes de tomate. Efeito estimulador foi observado principalmente em águas de fumaça produzidas com matérias-primas de folhas de palmeira (Euterpe precatoria e de milho (Zea mays, com madeira leve de uma espécie pioneira (Cecropia palmata; serragem de espécies madeireiras amazônicas (Diniziaexcelsa, Sextonia sp., Licania spp. e Aniba spp. e de papel de germinação. Esse efeito foi mais expressivo no comprimento de raiz e no índice de vigor, nas concentrações de 1:25 a 1:5.000, de acordo com a fonte; a concentração de 1:25 sobressaiu na maioria das matérias-primas testadas.Smoke and smoke diluted in water, known as smoke-water, can be used to promote both seed germination and seedling vigor of several wild and cultivated species. The objective of this study was to assess the effectiveness of smoke-water produced with different sources (raw materials and concentrations on seed germination and seedling vigor of tomato

  14. Modeling altered T-cell development with induced pluripotent stem cells from patients with RAG1-dependent immune deficiencies.

    Science.gov (United States)

    Brauer, Patrick M; Pessach, Itai M; Clarke, Erik; Rowe, Jared H; Ott de Bruin, Lisa; Lee, Yu Nee; Dominguez-Brauer, Carmen; Comeau, Anne M; Awong, Geneve; Felgentreff, Kerstin; Zhang, Yuhang H; Bredemeyer, Andrea; Al-Herz, Waleed; Du, Likun; Ververs, Francesca; Kennedy, Marion; Giliani, Silvia; Keller, Gordon; Sleckman, Barry P; Schatz, David G; Bushman, Frederic D; Notarangelo, Luigi D; Zúñiga-Pflücker, Juan Carlos

    2016-08-11

    Primary immunodeficiency diseases comprise a group of heterogeneous genetic defects that affect immune system development and/or function. Here we use in vitro differentiation of human induced pluripotent stem cells (iPSCs) generated from patients with different recombination-activating gene 1 (RAG1) mutations to assess T-cell development and T-cell receptor (TCR) V(D)J recombination. RAG1-mutants from severe combined immunodeficient (SCID) patient cells showed a failure to sustain progression beyond the CD3(--)CD4(-)CD8(-)CD7(+)CD5(+)CD38(-)CD31(-/lo)CD45RA(+) stage of T-cell development to reach the CD3(-/+)CD4(+)CD8(+)CD7(+)CD5(+)CD38(+)CD31(+)CD45RA(-) stage. Despite residual mutant RAG1 recombination activity from an Omenn syndrome (OS) patient, similar impaired T-cell differentiation was observed, due to increased single-strand DNA breaks that likely occur due to heterodimers consisting of both an N-terminal truncated and a catalytically dead RAG1. Furthermore, deep-sequencing analysis of TCR-β (TRB) and TCR-α (TRA) rearrangements of CD3(-)CD4(+)CD8(-) immature single-positive and CD3(+)CD4(+)CD8(+) double-positive cells showed severe restriction of repertoire diversity with preferential usage of few Variable, Diversity, and Joining genes, and skewed length distribution of the TRB and TRA complementary determining region 3 sequences from SCID and OS iPSC-derived cells, whereas control iPSCs yielded T-cell progenitors with a broadly diversified repertoire. Finally, no TRA/δ excision circles (TRECs), a marker of TRA/δ locus rearrangements, were detected in SCID and OS-derived T-lineage cells, consistent with a pre-TCR block in T-cell development. This study compares human T-cell development of SCID vs OS patients, and elucidates important differences that help to explain the wide range of immunologic phenotypes that result from different mutations within the same gene of various patients. PMID:27301863

  15. Modern Process Studies in Kongsfjord, Svalbard: Arctic Geoscience Research Experience for U.S. Undergraduates (Svalbard REU)

    Science.gov (United States)

    Powell, R. D.; Brigham-Grette, J.

    2011-12-01

    resourceful due to instrumentation failures or weather-related delays. Self-confidence and problem solving skills emerge from both field and laboratory research operations when students draw upon and expand their base of practical knowledge via trial and error. Logistical facilities in Ny Alesund offer an international experience with opportunities for dialog with scientists of a wide variety of disciplines working at research stations representing more than 12 different European and Asian countries. The program is funded by the NSF's Office of Polar Programs and has close ties and collaboration with the Norwegian University in Svalbard (UNIS) and Norsk Polar Institute scientists. NSF also funds a science teacher as a PolarTREC participant.

  16. Spatial Variability in the Stratosphere of Uranus

    Science.gov (United States)

    Orton, Glenn; Trafton, Lawrence; Encrenaz, Therese; Lacy, John; Fletcher, Leigh; Sinclair, James; Moses, Julianne; Leyrat, Cedric; Pantin, Eric

    2015-04-01

    Observations of spatial variability in the atmosphere of Uranus have been limited to cloud properties and temperatures in the troposphere from a combination of spacecraft and ground-based observations. We report observations of the spatial distribution of (1) the stratospheric temperature field and (2) the distribution of stratospheric acetylene from ground-based mid-infrared observations using giant telescopes that resolve the planet spatially. (1) Temperatures in the stratosphere were derived from spectral scanning of the H2 rotational S(1) quadrupole using the TEXES spectrometer at the Gemini North observatory in 2007, near Uranus' equinox at high resolution (R=55,000). The H2 S(1) line was mapped by scanning the slit longitudinally across the entire disk of the planet. The observed radiances from the line center emerge primarily from the 0.1-0.3mbar pressure level. As expected for the 'thermally inverted' stratosphere, the planet is limb brightened at all latitudes, generally consistent with the predictions for the temperature structure derived from Spitzer IRS disk-averaged spectra (Orton et al. 2014 Icarus 243, 494). A cut through the central meridian shows a generally smooth variability, with the (IAU-defined) northern hemisphere emerging from winter darkness marginally brighter than the southern hemisphere, consistent with a smooth meridional gradient of temperatures. A cut across the equator reveals an ostensible central brightening, as well as equal brightening toward the limbs. (2) The distribution of C2H2 in the stratosphere was derived from images of thermal emission made in 2009 using the mid-infrared imager/spectrometers VISIR at the Very Large Telescope and T-ReCS at the Gemini South Observatory using a 13.04-μm moderate-band (NeII_2) filter. Because the continuum in this spectral region is so faint, the upwelling radiation is dominated by acetylene emission from roughly the same pressure level at the radiation from the H2 S(2) quadrupole line

  17. Master of Science Teaching: Encouraging Teachers and their Students in Research

    Science.gov (United States)

    Reiff, P. H.

    2010-12-01

    The Master of Science Teaching program is designed to encourage more content knowledge among teachers. Thirty credit hours are required, chosen from 12 hours of Earth science courses, 12 hours of space science courses, a chemistry course, a math course, and research or education credits. A thesis is not required but each teacher must have a special project (either research or curriculum). A number of students chose as their project using ground penetrating radar to look for buried graves in an African-American cemetery. Others became Heliospheric Ambassadors, Messenger Ambassadors, or PolarTrec teachers. Nineteen teachers have graduated as of 2010 with six presently in the program. A survey of the participants has fifteen responses so far, with a good mixture of responses from early in the program to present students. Many (69%) were grade 6-8 teachers when they entered the program. After earning their MST, many had increased their teaching level: (93% reported that it helped their career path, 39% have upgraded to administration or science supervision, and 53% reported receiving a better or higher level job position as a result). Only one student no longer teaches (completing a PhD in Administration). Given that 20% of the respondents are still in the program, two thirds of the alumni (8 of 12) have earned better jobs. All respondents said that they learned from both the Earth and space science courses, and all respondents (except the person no longer in the classroom) say they use the earth and space science material in the classrooms, with 80% "frequently" and 13% "sometimes". They also report that they are more likely to encourage their students to become scientists (80%), more likely to encourage their students to support NASA (93%), and think that their students are getting better scores on the state standardized tests (60%). It is certainly not easy for teachers to perform publishable research (although some have), and it is even more difficult for students

  18. Using Interdisciplinary research to enrich teachers and classrooms

    Science.gov (United States)

    Warburton, J.; Timm, K.; Huffman, L. T.; Peart, L. W.; Hammond, J.; McMahon, E.

    2011-12-01

    Imagine being on the stern of a ship in the Atlantic Ocean off the coast of New England as the crew dumps thousands of scallops on the deck, searching the Greenland ice sheet for a remote weather station, or uncovering secrets to past climates as you join an ocean sediment drilling team in Antarctica. So you ask yourself, what would you be doing in all of these places? What you would be doing is what hundreds of educators from around the world have done for over 20 years, participating in field-based Teacher Research Experience (TRE) programs. Teacher Research Experiences involve educators from varying grade levels and backgrounds in hands-on research as a member of a scientific research team. The teacher works side by side with actual research scientists, often on tasks similar to a field assistant or graduate student. As an important member of the research team teachers learn more about science content and the process of science. Subsequently, the educators play a key role in digesting and communicating the science to their students and the general public. TRE programs vary in many ways. Programs take place in a variety of settings-from laboratories to field camps, and from university campuses to aircraft or ships. The primary commonality of the TRE programs in this presentation-PolarTREC (Teachers and Researchers Exploring and Collaborating), ANDRILL (ANtarctic geological DRILLing) Research Immersion for Science Educators (ARISE); Integrated Ocean Drilling Program (IODP) School of Rock (SOR); and the National Oceanic and Atmospheric Administration Teacher at Sea (TAS) program-is that these programs provide an authentic field-based research experience for teachers outside of a laboratory setting, frequently in harsh, remote, or unusual settings. In addition, each of these programs is federally funded, possess dedicated program management staff, leverage existing scientific and programmatic resources, and are usually national, and sometimes international, in scope

  19. 社会媒体短文本内容的语义概念关联和扩展%Semantic Concept Linking and Extension for Social Media Short Texts

    Institute of Scientific and Technical Information of China (English)

    肖永磊; 刘盛华; 刘悦; 程学旗; 赵文静; 任彦; 王宇平

    2014-01-01

    随着微博、照片分享等社会化媒体的快速发展,每天产生了大量的短文本内容如评论、微博等,对其进行深入挖掘有重大的应用价值和学术意义.该文选取微博作为例子,详细阐述我们提出的方法.微博信息流因其简短和实时的特性而具有非常大的价值,已经成为市场营销,股票预测、舆情监控等应用的重要信息源.尽管如此,微博内容特征极其稀疏、上下文语境提取困难,使得微博信息的挖掘面临着很大挑战.因此,我们提出一种基于Wikipedia的微博语义概念扩展方法,通过自动识别那些与微博信息语义相关的Wikipedia概念来丰富它的内容特征,从而有效提高微博信息数据挖掘和分析的效果.该文工作首先通过可链接性剪枝、概念关联和消歧,发现微博信息中重要的n-gram所对应的Wikipedia概念;其次,采用基于概念文档关联矩阵的NMF分解(非负矩阵分解)方法获取Wikipedia概念之间的语义近邻,为微博信息扩展相关的语义概念.基于TREC 2011的微博数据集和Wikipedia 2011数据集进行实验,与已有两个相关研究工作比较,该文提出的方法取得了较好的效果.

  20. Recent Progress in Molecular Recognition Imaging Using Atomic Force Microscopy.

    Science.gov (United States)

    Senapati, Subhadip; Lindsay, Stuart

    2016-03-15

    Atomic force microscopy (AFM) is an extremely powerful tool in the field of bionanotechnology because of its ability to image single molecules and make measurements of molecular interaction forces with piconewton sensitivity. It works in aqueous media, enabling studies of molecular phenomenon taking place under physiological conditions. Samples can be imaged in their near-native state without any further modifications such as staining or tagging. The combination of AFM imaging with the force measurement added a new feature to the AFM technique, that is, molecular recognition imaging. Molecular recognition imaging enables mapping of specific interactions between two molecules (one attached to the AFM tip and the other to the imaging substrate) by generating simultaneous topography and recognition images (TREC). Since its discovery, the recognition imaging technique has been successfully applied to different systems such as antibody-protein, aptamer-protein, peptide-protein, chromatin, antigen-antibody, cells, and so forth. Because the technique is based on specific binding between the ligand and receptor, it has the ability to detect a particular protein in a mixture of proteins or monitor a biological phenomenon in the native physiological state. One key step for recognition imaging technique is the functionalization of the AFM tips (generally, silicon, silicon nitrides, gold, etc.). Several different functionalization methods have been reported in the literature depending on the molecules of interest and the material of the tip. Polyethylene glycol is routinely used to provide flexibility needed for proper binding as a part of the linker that carries the affinity molecule. Recently, a heterofunctional triarm linker has been synthesized and successfully attached with two different affinity molecules. This novel linker, when attached to AFM tip, helped to detect two different proteins simultaneously from a mixture of proteins using a so-called "two

  1. Antarctica Day: An International Celebration

    Science.gov (United States)

    Pope, A.; Hambrook Berkman, J.; Berkman, P. A.

    2013-12-01

    For more than half a century, the 1959 Antarctic Treaty continues to shine as a rare beacon of international cooperation. To celebrate this milestone of peace in our civilization with hope and inspiration for future generations, Antarctica Day is celebrated each year on December 1st , the anniversary of the Antarctic Treaty signing. As an annual event - initiated by the Foundation for the Good Governance of International Spaces (www.internationalspaces.org/) in collaboration with the Association of Polar Early Carer Scientists (www.apecs.is) - Antarctica Day encourages participation from around the world. The Antarctic Treaty set aside 10% of the earth, 'forever to be used exclusively for peaceful purposes in the interest of mankind.' It was the first nuclear arms agreement and the first institution to govern all human activities in an international region beyond sovereign jurisdictions. In this spirit, Antarctica Day aims to: - Demonstrate how diverse nations can work together peacefully, using science as a global language of cooperation for decision making beyond national boundaries, - Provide strategies for students learning about Antarctica through art, science and history at all school levels, - Increase collaboration and communication between classrooms, communities, researchers and government officials around the world, and - Provide a focus for polar educators to build on each year. Through close collaboration with a number of partners. Antarctica Day activities have included: a Polar Film Festival convened by The Explorers Club; live sessions connecting classrooms with scientists in Antarctica thanks to PolarTREC and ARCUS; an international activity that involved children from 13 countries who created over 600 flags which exemplify Antarctica Day (these were actually flown in Antarctica with signed certificates then returned to the classes); a map where Antarctica Day participants all over the world could share what they were doing; an Antarctic bird count

  2. Recuperação inteligente de jurisprudência: uma avaliação do raciocínio baseado em casos aplicado a recuperação de jurisprudências no Tribunal Regional Eleitoral do Distrito Federal

    Directory of Open Access Journals (Sweden)

    Symball Rufino de Oliveira

    2011-04-01

    Full Text Available Trata-se de uma pesquisa cujo objeto é avaliar a medida de precisão de um sistema de recuperação de informação jurídica (jurisprudência que utiliza técnica de inteligência artificial conhecida como Raciocínio Baseado em Casos (RBC. Nesse modelo as jurisprudências são organizadas sob a forma de casos jurídicos concretos. O raciocínio baseado em casos tem como princípio a idéias de que um caso jurídico passado pode ser útil para resolver um problema atual, desde que exista entre eles algum grau de semelhança. Para estabelecer semelhanças entre casos atuais e passados o modelo estudado propõe o uso de cálculo de similaridade que é realizado com base na comparação de índices temáticos obtidos a partir do processo de indexação realizado por especialistas utilizando-se como apoio um tesauro jurídico. Esta pesquisa utiliza como universo as jurisprudências produzidas pelo Tribunal Regional Eleitoral do Distrito Federal. A amostra foi composta, considerando o recorte dado à pesquisa, por jurisprudências eleitorais produzidas nas eleições gerais de 2006 no Distrito Federal. Para realizar a avaliação do modelo, foi construído um protótipo do sistema de recuperação de informação baseado em casos. Em seguida, avaliou-se o protótipo quanto ao grau de precisão obtido no resultado de um conjunto de buscas. O método adotado para as avaliações foi o mesmo utilizado na Text REtrieval Conference (TREC de 2007, tarefa Legal Track. Após a coleta dos dados foi elaborado um relatório discutindo a possibilidade do sistema de recuperação de informação baseado em casos ser considerado um paradigma para a recuperação de informação jurídica eleitoral.

  3. 跨語言資訊檢索:理論、技術與應用 | Cross-Language Information Retrieval: Theories and Technologies

    Directory of Open Access Journals (Sweden)

    陳信希 Hsin-His Chen

    2002-04-01

    Full Text Available

    頁次:19-32

    多語性是網路社會的重要特徵之一,如何將網路資源,介紹給不同語言的使用者,同時吸收其他語言所呈現的資訊,都是資訊國際化不能忽略的重要課題。跨語言資訊檢索,提供使用者以某種語言檢索另外一種語言表達的文件,為近年來很活躍的研究題目之一。本文嘗試將這個研究主題相關的理論和技術,介紹給有興趣的讀者。首先探討詢問翻譯、文件翻譯、和不翻譯等三類基本方法。接著考慮翻譯歧義性和目標多義性,以及專有名詞音譯等進階方法。評估是促進技術進步的必要工作,本文最後也介紹跨語言資訊檢索三大評比:TREC CLEF、與 NTCIR

    Multilinguality is one

  4. Connections in the Field and Beyond: A Case Study of Successful Teacher Research Experiences at the Poles

    Science.gov (United States)

    Rosenberger, D.

    2007-12-01

    Successful and lasting partnerships between scientists and teachers can be established through Teacher Research Experiences (TRE). The documented benefits of the TRE include increased teacher retention in addition to renewed instructional practices in veteran teachers. The reality and excitement of field science is very difficult to convey to students if the teacher has never personally experienced it, and a TRE can transfer this interest into the classroom. With the field research experience as the centerpiece of the TRE relationship, much should be done before, during, and after the TRE to ensure a positive and lasting connection that meets the needs of both the teacher and researcher. This presentation focuses, from a teacher's first-hand perspective, on the critical issues that scientists must consider to ensure successful collaborations with teachers in the field. I have participated in two TRE's and have learned a great deal from both. In 2001, through the National Science Foundation sponsored program Teachers Experiencing Antarctica and the Arctic (TEA) I was able to participate in biochemical oceanographic science on-board the Icebreaker Oden in the Arctic Ocean. In 2005, I did biogeochemical research at Pony Lake/McMurdo Station in Antarctica as a participant in Teachers and Researchers Exploring and Collaborating (TREC), a program of the Arctic Research Consortium of the United States (ARCUS). On both research experiences, I was a working member of the science team. I was responsible for numerous teaching and outreach activities including: uploading daily journals and photos to a website, answering email from students and the public, and managing live communications with schools. Both research experiences were very successful and have resulted in lasting relationships with scientists and other teachers interested in polar science. My participation in these experiences also influenced my teaching by increasing student enthusiasm in the classroom and

  5. 中文檢索評估系統可行性研究 | Proposing a Prototype for Chinese Corpus Test Collection

    Directory of Open Access Journals (Sweden)

    吳美美 Mei-Mei Wu

    1999-04-01

    Full Text Available

    頁次:68-87

    本研究主要在探討建置一個中文檢索評估系統的可行性。數位化成為必要的趨勢之後,世界上各重要語言都受到其使用國家的重視與贊助而開始進行研究。1992年起美國國家標準暨技術局(NIST和美國國防部尖端研究企畫署的資訊科技室(DARPA閒始組織一系列的文獻檢索會議(Text Retrieval Conference, TREC,每年舉辦一次評比研討會議,至今已有TREC 9的召開。日本在籌畫五年之後,亦在今年(1999開始推展日文的檢索評比研討活動。本文提出建置一個中文檢索評估系統可行性研究,並期望政府重視支持而能建設一個良好的中文檢索研究環境,以便鼓勵更多的研究者參與中文資訊檢索的研究。

    Chinese language retrieval evaluation has caught the attention of researchers studying cross language retrieval techniques internationally. The importance of Chinese language in information retrieval ( IR has been recognized, however, the evaluation tool and research environment is limited. Given the importance of Networked Information Retrieval (NIR and the accelerating development of Digital Library (DL, a Chinese corpus test collection and a set of evaluation criteria for IR evaluation is

  6. Behavior and diet of the Critically Endangered Eulemur cinereiceps in Manombo forest, southeast Madagascar

    Directory of Open Access Journals (Sweden)

    Nancy J. Stevens

    2008-12-01

    distribution. Les résultats des études effectuées sur les individus restants de cette espèce, qui est classée comme Gravement Menacée, permettent d’énumérer un total de 54 espèces de plantes appartenant à 24 familles qui sont consommés par l’espèce. D’autre part, deux tiers du régime alimentaire d’E. cinereiceps sont représentés par des fruits mûrs ou non. Le Lémur à collier blanc consomme occasionnellement une quantité assez importante de plantes envahissantes pour assurer ses besoins nutritifs, ce qui n’est pas habituel dans l’histoire naturelle de la vie des lémuriens. La présente etude constitue également la première observation de consummation d’une espèce inconnue de champignon par les représentants d’E. cinereiceps. Dans le présent cas, ledit champignon venait juste de pousser sur un pied mort de Cecropia peltata, une espèce allogène et envahissante de la région. Durant la prise de nourriture, l’animal a arraché des morceaux du champignon sur l’arbre mort avec la main et puis la bouche. La partie consommée a été mâchée par l’animal pendant une période de 0,28 s. Le Lémur à collier blanc consomme aussi des fruits épicés d’une espèce de plante allogène (Aframomum angustifolium qui ne pousse que dans des zones ouvertes et extrêmement dégradées. La prise de nourriture sur cette espèce de plante commence par l’enlèvement de la partie dure du fruit, pour cela l’animal utilise ses dents antérieures très puissantes, puis il tire soigneusement en même temps avec ses dents et sa langue la partie charnue et les graines. Cette prise de nourriture s’effectue pendant une période d’environ 0,22 s. C’était la première fois dans l’histoire des lémuriens de Manombo que des observations ont été effectuées sur un animal en train de manger des espèces de plantes inhabituelles. L’aptitude de manger des espèces de plantes telle que A. angustifolium pourrait permettre à E. cinereiceps d

  7. Editorial

    Directory of Open Access Journals (Sweden)

    André Luis Calado Araújo

    2010-07-01

    alternativa (georremediação aditivada, GAD para melhorar substancialmente a degradação da matéria orgânica recalcitrante contida no chorume, associada a uma redução significativa nas concentrações de alguns metais pesados do efluente. O quinto trabalho, elaborado por pesquisadores da UFOPA, discorre sobre os Cepropiais nativos formados pela espécie Cecropia palmata, dentre outras, que, acumulando fósforo (P em tecidos foliares e cascas, podem prestar um serviço ecológico em paisagens amazônicas com deficiência desse elemento químico. De autoria de pesquisadores do IFRN, o artigo de número seis trata do diagnóstico da qualidade sanitária de plantas medicinais comercializadas em Currais Novos/RN. Os resultados mostram contaminações por grupos, contagens de bactérias do grupo dos coliformes totais, e os níveis de contaminação registrados apontam o material analisado como potencialmente danoso à saúde humana. O sétimo artigo, por sua vez, é fruto de uma cooperação entre pesquisadores do IFRN e da UFPE, que apresentam resultados de estudos no controle ambiental de perfuração de poços de petróleo no Campo de Porto Carão, Carnaubais/RN. O trabalho analisa as limitações do Relatório de Controle Ambiental. Voltado para o desenvolvimento sustentável do turismo, o oitavo artigo discute o tema e verifica que a atividade turística de Natal se constitui em alternativa viável de desenvolvimento, observando, no entanto, que o novo poder local deve desempenhar o seu papel de fomentador e protagonista do desenvolvimento socioeconômico. O artigo seguinte traz uma discussão sobre os resíduos eletrônicos de computadores nas Instituições de ensino superior em Natal/RN, observando que sua gestão é incipiente. Os autores são oriundos da UFRN, da UnP e da UNESP. Apresentado por pesquisadores da UFRN, o décimo artigo examinam conceitos e aspectos da Gerência do Conhecimento que possam contribuir no desenvolvimento de ferramentas mais adaptadas para