iCAVE: an open source tool for visualizing biomolecular networks in 3D, stereoscopic 3D and immersive 3D.

Science.gov (United States)

Liluashvili, Vaja; Kalayci, Selim; Fluder, Eugene; Wilson, Manda; Gabow, Aaron; Gümüs, Zeynep H

2017-08-01

Visualizations of biomolecular networks assist in systems-level data exploration in many cellular processes. Data generated from high-throughput experiments increasingly inform these networks, yet current tools do not adequately scale with concomitant increase in their size and complexity. We present an open source software platform, interactome-CAVE (iCAVE), for visualizing large and complex biomolecular interaction networks in 3D. Users can explore networks (i) in 3D using a desktop, (ii) in stereoscopic 3D using 3D-vision glasses and a desktop, or (iii) in immersive 3D within a CAVE environment. iCAVE introduces 3D extensions of known 2D network layout, clustering, and edge-bundling algorithms, as well as new 3D network layout algorithms. Furthermore, users can simultaneously query several built-in databases within iCAVE for network generation or visualize their own networks (e.g., disease, drug, protein, metabolite). iCAVE has modular structure that allows rapid development by addition of algorithms, datasets, or features without affecting other parts of the code. Overall, iCAVE is the first freely available open source tool that enables 3D (optionally stereoscopic or immersive) visualizations of complex, dense, or multi-layered biomolecular networks. While primarily designed for researchers utilizing biomolecular networks, iCAVE can assist researchers in any field. © The Authors 2017. Published by Oxford University Press.

Clastic cave deposits in Botovskaya cave (Eastern Siberia, Russian Federation)

Czech Academy of Sciences Publication Activity Database

Kadlec, Jaroslav; Chadima, Martin; Lisá, Lenka; Hercman, H.; Osintsev, A.; Oberhänsli, H.

2008-01-01

Roč. 70, č. 3 (2008), s. 142-155 ISSN 1090-6924 Institutional research plan: CEZ:AV0Z30130516 Keywords : cave sediments * mineral magnetism * Botovskaya Cave Subject RIV: DE - Earth Magnetism, Geodesy, Geography Impact factor: 0.532, year: 2008 http://www.caves.org/pub/journal/Journal_of_Cave_and_Karst_Studies_volume_70.htm

Comparing flow-through and static ice cave models for Shoshone Ice Cave

Directory of Open Access Journals (Sweden)

Kaj E. Williams

2015-05-01

Full Text Available In this paper we suggest a new ice cave type: the “flow-through” ice cave. In a flow-through ice cave external winds blow into the cave and wet cave walls chill the incoming air to the wet-bulb temperature, thereby achieving extra cooling of the cave air. We have investigated an ice cave in Idaho, located in a lava tube that is reported to have airflow through porous wet end-walls and could therefore be a flow-through cave. We have instrumented the site and collected data for one year. In order to determine the actual ice cave type present at Shoshone, we have constructed numerical models for static and flow-through caves (dynamic is not relevant here. The models are driven with exterior measurements of air temperature, relative humidity and wind speed. The model output is interior air temperature and relative humidity. We then compare the output of both models to the measured interior air temperatures and relative humidity. While both the flow-through and static cave models are capable of preserving ice year-round (a net zero or positive ice mass balance, both models show very different cave air temperature and relative humidity output. We find the empirical data support a hybrid model of the static and flow-through models: permitting a static ice cave to have incoming air chilled to the wet-bulb temperature fits the data best for the Shoshone Ice Cave.

A new asynchronous parallel algorithm for inferring large-scale gene regulatory networks.

Directory of Open Access Journals (Sweden)

Xiangyun Xiao

Full Text Available The reconstruction of gene regulatory networks (GRNs from high-throughput experimental data has been considered one of the most important issues in systems biology research. With the development of high-throughput technology and the complexity of biological problems, we need to reconstruct GRNs that contain thousands of genes. However, when many existing algorithms are used to handle these large-scale problems, they will encounter two important issues: low accuracy and high computational cost. To overcome these difficulties, the main goal of this study is to design an effective parallel algorithm to infer large-scale GRNs based on high-performance parallel computing environments. In this study, we proposed a novel asynchronous parallel framework to improve the accuracy and lower the time complexity of large-scale GRN inference by combining splitting technology and ordinary differential equation (ODE-based optimization. The presented algorithm uses the sparsity and modularity of GRNs to split whole large-scale GRNs into many small-scale modular subnetworks. Through the ODE-based optimization of all subnetworks in parallel and their asynchronous communications, we can easily obtain the parameters of the whole network. To test the performance of the proposed approach, we used well-known benchmark datasets from Dialogue for Reverse Engineering Assessments and Methods challenge (DREAM, experimentally determined GRN of Escherichia coli and one published dataset that contains more than 10 thousand genes to compare the proposed approach with several popular algorithms on the same high-performance computing environments in terms of both accuracy and time complexity. The numerical results demonstrate that our parallel algorithm exhibits obvious superiority in inferring large-scale GRNs.

A new asynchronous parallel algorithm for inferring large-scale gene regulatory networks.

Science.gov (United States)

Xiao, Xiangyun; Zhang, Wei; Zou, Xiufen

2015-01-01

The reconstruction of gene regulatory networks (GRNs) from high-throughput experimental data has been considered one of the most important issues in systems biology research. With the development of high-throughput technology and the complexity of biological problems, we need to reconstruct GRNs that contain thousands of genes. However, when many existing algorithms are used to handle these large-scale problems, they will encounter two important issues: low accuracy and high computational cost. To overcome these difficulties, the main goal of this study is to design an effective parallel algorithm to infer large-scale GRNs based on high-performance parallel computing environments. In this study, we proposed a novel asynchronous parallel framework to improve the accuracy and lower the time complexity of large-scale GRN inference by combining splitting technology and ordinary differential equation (ODE)-based optimization. The presented algorithm uses the sparsity and modularity of GRNs to split whole large-scale GRNs into many small-scale modular subnetworks. Through the ODE-based optimization of all subnetworks in parallel and their asynchronous communications, we can easily obtain the parameters of the whole network. To test the performance of the proposed approach, we used well-known benchmark datasets from Dialogue for Reverse Engineering Assessments and Methods challenge (DREAM), experimentally determined GRN of Escherichia coli and one published dataset that contains more than 10 thousand genes to compare the proposed approach with several popular algorithms on the same high-performance computing environments in terms of both accuracy and time complexity. The numerical results demonstrate that our parallel algorithm exhibits obvious superiority in inferring large-scale GRNs.

Identification of Fuzzy Inference Systems by Means of a Multiobjective Opposition-Based Space Search Algorithm

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Wei Huang

2013-01-01

Full Text Available We introduce a new category of fuzzy inference systems with the aid of a multiobjective opposition-based space search algorithm (MOSSA. The proposed MOSSA is essentially a multiobjective space search algorithm improved by using an opposition-based learning that employs a so-called opposite numbers mechanism to speed up the convergence of the optimization algorithm. In the identification of fuzzy inference system, the MOSSA is exploited to carry out the parametric identification of the fuzzy model as well as to realize its structural identification. Experimental results demonstrate the effectiveness of the proposed fuzzy models.

Efficient fuzzy Bayesian inference algorithms for incorporating expert knowledge in parameter estimation

Science.gov (United States)

Rajabi, Mohammad Mahdi; Ataie-Ashtiani, Behzad

2016-05-01

Bayesian inference has traditionally been conceived as the proper framework for the formal incorporation of expert knowledge in parameter estimation of groundwater models. However, conventional Bayesian inference is incapable of taking into account the imprecision essentially embedded in expert provided information. In order to solve this problem, a number of extensions to conventional Bayesian inference have been introduced in recent years. One of these extensions is 'fuzzy Bayesian inference' which is the result of integrating fuzzy techniques into Bayesian statistics. Fuzzy Bayesian inference has a number of desirable features which makes it an attractive approach for incorporating expert knowledge in the parameter estimation process of groundwater models: (1) it is well adapted to the nature of expert provided information, (2) it allows to distinguishably model both uncertainty and imprecision, and (3) it presents a framework for fusing expert provided information regarding the various inputs of the Bayesian inference algorithm. However an important obstacle in employing fuzzy Bayesian inference in groundwater numerical modeling applications is the computational burden, as the required number of numerical model simulations often becomes extremely exhaustive and often computationally infeasible. In this paper, a novel approach of accelerating the fuzzy Bayesian inference algorithm is proposed which is based on using approximate posterior distributions derived from surrogate modeling, as a screening tool in the computations. The proposed approach is first applied to a synthetic test case of seawater intrusion (SWI) in a coastal aquifer. It is shown that for this synthetic test case, the proposed approach decreases the number of required numerical simulations by an order of magnitude. Then the proposed approach is applied to a real-world test case involving three-dimensional numerical modeling of SWI in Kish Island, located in the Persian Gulf. An expert

An Improved Binary Differential Evolution Algorithm to Infer Tumor Phylogenetic Trees.

Science.gov (United States)

Liang, Ying; Liao, Bo; Zhu, Wen

2017-01-01

Tumourigenesis is a mutation accumulation process, which is likely to start with a mutated founder cell. The evolutionary nature of tumor development makes phylogenetic models suitable for inferring tumor evolution through genetic variation data. Copy number variation (CNV) is the major genetic marker of the genome with more genes, disease loci, and functional elements involved. Fluorescence in situ hybridization (FISH) accurately measures multiple gene copy number of hundreds of single cells. We propose an improved binary differential evolution algorithm, BDEP, to infer tumor phylogenetic tree based on FISH platform. The topology analysis of tumor progression tree shows that the pathway of tumor subcell expansion varies greatly during different stages of tumor formation. And the classification experiment shows that tree-based features are better than data-based features in distinguishing tumor. The constructed phylogenetic trees have great performance in characterizing tumor development process, which outperforms other similar algorithms.

Cave age determination

International Nuclear Information System (INIS)

Anon.

1998-01-01

To determine the age of a cave we have to determine the age of elements which were created at the same moment when the cave was. Usually a cave is dug out by infiltration of acid waters. During this alteration process rocks free some aluminium and potassium ions. In Carlsbad and Lechuguilla caves, scientists have found alunite, this aluminium and potassium sulfate can be dated by using the carbon method of age determination. (A.C.)

Salt ingestion caves.

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Lundquist Charles A.

2006-01-01

Full Text Available Large vertebrate herbivores, when they find a salt-bearing layer of rock, say in a cliff face, can produce sizable voids where, overgenerations, they have removed and consumed salty rock. The cavities formed by this natural animal process constitute a uniqueclass of caves that can be called salt ingestion caves. Several examples of such caves are described in various publications. Anexample in Mississippi U.S.A., Rock House Cave, was visited by the authors in 2000. It seems to have been formed by deer orbison. Perhaps the most spectacular example is Kitum Cave in Kenya. This cave has been excavated to a length over 100 metersby elephants. An ancient example is La Cueva del Milodon in Chile, which is reported to have been excavated by the now extinctmilodon, a giant ground sloth. Still other possible examples can be cited. This class of caves deserves a careful definition. First, thecavity in rock should meet the size and other conventions of the locally accepted definition of a cave. Of course this requirement differsin detail from country to country, particularly in the matter of size. The intent is to respect the local conventions. The characteristicthat human entry is possible is judged to be a crucial property of any recognized cave definition. Second, the cavity should besignificantly the result of vertebrate animal consumption of salt-bearing rock. The defining process is that rock removed to form thecave is carried away in the digestive track of an animal. While sodium salts are expected to be the norm, other salts for which thereis animal hunger are acceptable. Also some other speleogenesis process, such as solution, should not be excluded as long as it issecondary in formation of a cave in question.

Cryogenic Cave Pearls In the Periglacial Zones of Ice Caves

Czech Academy of Sciences Publication Activity Database

Žák, Karel; Orvošová, M.; Filippi, Michal; Vlček, M.; Onac, B. P.; Persoiu, A.; Rohovec, Jan; Světlík, Ivo

2013-01-01

Roč. 83, č. 2 (2013), s. 207-220 ISSN 1527-1404 R&D Projects: GA ČR GAP210/10/1760 Institutional research plan: CEZ:AV0Z30130516 Institutional support: RVO:67985831 ; RVO:61389005 Keywords : caves * cryogenic caves * ice caves * periglacial zones Subject RIV: DB - Geology ; Mineralogy Impact factor: 1.943, year: 2013

An Efficient Forward-Reverse EM Algorithm for Statistical Inference in Stochastic Reaction Networks

KAUST Repository

Bayer, Christian

2016-01-06

In this work [1], we present an extension of the forward-reverse algorithm by Bayer and Schoenmakers [2] to the context of stochastic reaction networks (SRNs). We then apply this bridge-generation technique to the statistical inference problem of approximating the reaction coefficients based on discretely observed data. To this end, we introduce an efficient two-phase algorithm in which the first phase is deterministic and it is intended to provide a starting point for the second phase which is the Monte Carlo EM Algorithm.

An Efficient Forward-Reverse EM Algorithm for Statistical Inference in Stochastic Reaction Networks

KAUST Repository

Bayer, Christian; Moraes, Alvaro; Tempone, Raul; Vilanova, Pedro

2016-01-01

In this work [1], we present an extension of the forward-reverse algorithm by Bayer and Schoenmakers [2] to the context of stochastic reaction networks (SRNs). We then apply this bridge-generation technique to the statistical inference problem

A neuro-fuzzy inference system tuned by particle swarm optimization algorithm for sensor monitoring

Energy Technology Data Exchange (ETDEWEB)

Oliveira, Mauro Vitor de [Instituto de Engenharia Nuclear (IEN), Rio de Janeiro, RJ (Brazil). Div. de Instrumentacao e Confiabilidade Humana]. E-mail: mvitor@ien.gov.br; Schirru, Roberto [Universidade Federal, Rio de Janeiro, RJ (Brazil). Coordenacao dos Programas de Pos-graduacao de Engenharia. Lab. de Monitoracao de Processos

2005-07-01

A neuro-fuzzy inference system (ANFIS) tuned by particle swarm optimization (PSO) algorithm has been developed for monitor the relevant sensor in a nuclear plant using the information of other sensors. The antecedent parameters of the ANFIS that estimates the relevant sensor signal are optimized by a PSO algorithm and consequent parameters use a least-squares algorithm. The proposed sensor-monitoring algorithm was demonstrated through the estimation of the nuclear power value in a pressurized water reactor using as input to the ANFIS six other correlated signals. The obtained results are compared to two similar ANFIS using one gradient descendent (GD) and other genetic algorithm (GA), as antecedent parameters training algorithm. (author)

A neuro-fuzzy inference system tuned by particle swarm optimization algorithm for sensor monitoring

International Nuclear Information System (INIS)

Oliveira, Mauro Vitor de; Schirru, Roberto

2005-01-01

A neuro-fuzzy inference system (ANFIS) tuned by particle swarm optimization (PSO) algorithm has been developed for monitor the relevant sensor in a nuclear plant using the information of other sensors. The antecedent parameters of the ANFIS that estimates the relevant sensor signal are optimized by a PSO algorithm and consequent parameters use a least-squares algorithm. The proposed sensor-monitoring algorithm was demonstrated through the estimation of the nuclear power value in a pressurized water reactor using as input to the ANFIS six other correlated signals. The obtained results are compared to two similar ANFIS using one gradient descendent (GD) and other genetic algorithm (GA), as antecedent parameters training algorithm. (author)

Cryogenic cave carbonates from the Cold Wind Cave, Nízke Tatry Mountains, Slovakia: Extending the age range of cryogenic cave carbonate formation to the Saalian

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Zak K.

2009-07-01

Full Text Available Cold Wind Cave, located at elevations ranging between 1,600 and 1,700 m a. s. l. in the main range of the Nízke Tatry Mountains(Slovakia, is linked in origin with the adjacent Dead Bats Cave. Together, these caves form a major cave system located within anarrow tectonic slice of Triassic sediments. Both caves have undergone complex multiphase development. A system of sub-horizontalcave levels characterized by large, tunnel-like corridors was formed during the Tertiary, when elevation differences surroundingthe cave were less pronounced than today. The central part of the Nízke Tatry Mountains, together with the cave systems, wasuplifted during the Neogene and Lower Pleistocene, which changed the drainage pattern of the area completely. The formation ofnumerous steep-sloped vadose channels and widespread cave roof frost shattering characterized cave development throughout theQuaternary.In the Cold Wind Cave, extensive accumulations of loose, morphologically variable crystal aggregates of secondary cave carbonateranging in size between less than 1 mm to about 35 mm was found on the surface of fallen limestone blocks. Based on the C andO stable isotope compositions of the carbonate (δ13C: 0.72 to 6.34 ‰, δ18O: –22.61 to –13.68 ‰ V-PDB and the negative relationbetween δ13C and δ18O, the carbonate crystal aggregates are interpreted as being cryogenic cave carbonate (CCC. Publishedmodels suggest the formation of CCC in slowly freezing water pools, probably on the surface of cave ice, most probably duringtransitions from stadials to interstadials. Though the formation of these carbonates is likely one of the youngest events in thesequence of formation of cave sediments of the studied caves, the 230Th/234U ages of three samples (79.7±2.3, 104.0±2.9, and180.0±6.3 ka are the oldest so far obtained for CCC in Central Europe. This is the first description of CCC formation in one caveduring two glacial periods (Saalian and Weichselian.

A comparison of algorithms for inference and learning in probabilistic graphical models.

Science.gov (United States)

Frey, Brendan J; Jojic, Nebojsa

2005-09-01

Research into methods for reasoning under uncertainty is currently one of the most exciting areas of artificial intelligence, largely because it has recently become possible to record, store, and process large amounts of data. While impressive achievements have been made in pattern classification problems such as handwritten character recognition, face detection, speaker identification, and prediction of gene function, it is even more exciting that researchers are on the verge of introducing systems that can perform large-scale combinatorial analyses of data, decomposing the data into interacting components. For example, computational methods for automatic scene analysis are now emerging in the computer vision community. These methods decompose an input image into its constituent objects, lighting conditions, motion patterns, etc. Two of the main challenges are finding effective representations and models in specific applications and finding efficient algorithms for inference and learning in these models. In this paper, we advocate the use of graph-based probability models and their associated inference and learning algorithms. We review exact techniques and various approximate, computationally efficient techniques, including iterated conditional modes, the expectation maximization (EM) algorithm, Gibbs sampling, the mean field method, variational techniques, structured variational techniques and the sum-product algorithm ("loopy" belief propagation). We describe how each technique can be applied in a vision model of multiple, occluding objects and contrast the behaviors and performances of the techniques using a unifying cost function, free energy.

Reveal, A General Reverse Engineering Algorithm for Inference of Genetic Network Architectures

Science.gov (United States)

Liang, Shoudan; Fuhrman, Stefanie; Somogyi, Roland

1998-01-01

Given the immanent gene expression mapping covering whole genomes during development, health and disease, we seek computational methods to maximize functional inference from such large data sets. Is it possible, in principle, to completely infer a complex regulatory network architecture from input/output patterns of its variables? We investigated this possibility using binary models of genetic networks. Trajectories, or state transition tables of Boolean nets, resemble time series of gene expression. By systematically analyzing the mutual information between input states and output states, one is able to infer the sets of input elements controlling each element or gene in the network. This process is unequivocal and exact for complete state transition tables. We implemented this REVerse Engineering ALgorithm (REVEAL) in a C program, and found the problem to be tractable within the conditions tested so far. For n = 50 (elements) and k = 3 (inputs per element), the analysis of incomplete state transition tables (100 state transition pairs out of a possible 10(exp 15)) reliably produced the original rule and wiring sets. While this study is limited to synchronous Boolean networks, the algorithm is generalizable to include multi-state models, essentially allowing direct application to realistic biological data sets. The ability to adequately solve the inverse problem may enable in-depth analysis of complex dynamic systems in biology and other fields.

Late Glacial Tropical Savannas in Sundaland Inferred From Stable Carbon Isotope Records of Cave Guano

Science.gov (United States)

Wurster, C. M.; Bird, M. I.; Bull, I.; Dungait, J.; Bryant, C. L.; Ertunç, T.; Hunt, C.; Lewis, H. A.; Paz, V.

2008-12-01

During the Last Glacial Period (LGP), reduced global sea level exposed the continental shelf south of Thailand to Sumatra, Java, and Borneo to form the contiguous continent of Sundaland. However, the type and extent of vegetation that existed on much of this exposed landmass during the LGP remains speculative. Extensive bird and bat guano deposits in caves throughout this region span beyond 40,000 yr BP, and contain a wealth of untapped stratigraphic palaeoenvironmental information. Stable carbon isotope ratios of insectivorous bird and bat guano contain a reliable record of the animal's diet and, through non-specific insect predation, reflect the relative abundance of major physiological pathways in plants. Various physiological pathways of carbon fixation in plants yield differing stable carbon isotope ratios. Stable carbon isotope values of C3 plants are lower than C4 vegetation due to different enzymatic discriminations of the heavy isotope through the carbon fixing pathways. In tropical locales, grasses nearly always follow the C4 photosynthetic pathway, whereas tropical rainforest uses C3 photosynthesis, providing a proxy for vegetation and therefore climate change in the past. Here we discuss four guano stable-isotope records, based on insect cuticle and n-alkane analysis, supplemented by pollen analysis. All sites suggest a C3 dominated ecosystem for the Holocene, consistent with the wet tropical forest vegetation present at all locations. Two sites from Palawan Island, Philippines, record stable carbon isotope values of guano that document a drastic change from C3 (forest) to C4 (savanna) dominated ecosystems during the Last Glacial Maximum (LGM). A third location, at Niah Great Cave, Malaysia, indicates C3-dominant vegetation throughout the record, but does display variation in stable carbon isotope values likely linked to humidity changes. A fourth location, Batu Caves in Peninsular Malaysia, also indicates open vegetation during the LGM. Vegetation

Črna Jama as a cold air trap cave within Postojna Cave, Slovenia

Science.gov (United States)

Šebela, Stanka; Turk, Janez

2017-10-01

Črna Jama is the coldest section of cave within the Postojna Cave System. Mean annual air temperatures at the Črna Jama 2 site are 5.6 °C (2015) and 5.7 °C (2016), and at the Črna Jama 3 site 7.1 °C (2015) and 7.2 (2016), whereas the mean external air temperature was 10.3 °C (2015) and 10.0 °C (2016). In Lepe Jame, the passage most heavily visited by tourists, the mean cave-air temperature is 10.7 °C (2014-2017). Črna Jama exhibits winter and summer temperature regimes. During warm periods (Tcave Tout), ventilation takes place and dense, cold, outside air sinks into Črna Jama because of the favourable cave entrance morphology. Recent Črna Jama air temperature data (2014-2017) indicate a < 0.5 °C higher temperature than that recorded in historical data since 1933. Črna Jama is the most appropriate place within the Postojna Cave System to study long-term climatic changes. There are hardly any tourist visits to the cave, and human impacts on the cave climate are essentially reduced.

Cave Entrance dependent Spore Dispersion of Filamentous Fungi Isolated from Various Sediments of Iron Ore Cave in Brazil: a colloquy on human threats while caving

Directory of Open Access Journals (Sweden)

Erika Linzi Silva Taylor

2014-04-01

Full Text Available Caves are stable environments with characteristics favoring the development of fungi. The fungal community present in a cave also includes pathogenic and opportunistic species out of which some are also served as energy sources in such energy stared ecosystems. Studies on microbial diversity and their role on such energy starved ecosystem are scarce. The present study was aimed to identify the cultivable filamentous fungi present in the various sediment of an iron ore cave and to recognize them as pathogenic and/or opportunistic species. Further the impact of cave entrance on the spore depositions on various distances dependent sediments were analyzed. The results suggest a diverse microbial community inhabiting the cave and an influence of cave entrance over spore deposition on various sediments. We counted a total of 4,549 filamentous fungi that included 34 species of 12 genera: Acremonium, Aspergillus, Cladosporium, Fusarium, Geotrichum, Paecilomyces, Purpureocillium, Penicillium, Torula, Trichoderma, Mucor and Rhizopus. A positive significant relation was observed between spore deposition and distance from cave entrance (p= 0.001. Areas of potential mycoses risks were recognized. This is the first study on microbiological community of an iron ore cave in the country.

The show cave of Diros vs. wild caves of Peloponnese, Greece - distribution patterns of Cyanobacteria

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Vasiliki Lamprinou

2014-09-01

Full Text Available The karst cave ‘Vlychada’of Diros, one of the oldest show caves in Peloponnese, sustains extended phototrophic biofilms on various substrata – on rocks inside the cave including speleothems, and especially near the artificial lighting installation (‘Lampenflora’. After a survey of the main abiotic parameters (Photosynthetically Active Radiation -PAR, Temperature -T, Relative Humidity -RH, Carbon Dioxide -CO2 three clusters of sampling sites were revealed according to Principal Component Analysis (PCA: i the water gallery section predominately influenced by CO2, ii the dry passages influenced by RH and PAR, and iii the area by the cave exit at the dry section influenced by temperature. The collected samples from the water gallery section and the dry passages of the cave revealed a total of 43 taxa of Cyanobacteria, with the unicellular/colonial forms being the most abundant. The applied non-metric Multi-dimensional Scaling Ordination (nMDS of the cumulative species composition showed a clear distinction between the water gallery section and the dry passages of the cave. Further comparison with previous data from other wild caves of Peloponnese (‘Kastria’, ‘Francthi’, and ‘Selinitsa’ was conducted revealing a distinction between the show cave and the wild ones. Apart from the human impact on cave ecosystems – through aesthetic alteration (‘greening’ of cave decorations by the ‘Lampenflora’, and by the cleaning treatments and restoration projects on the speleothems – identification of the organisms constituting the ‘Lampenflora’ might provide taxonomically and ecologically significant taxa.

Survey and hydrogeology of Carroll Cave

Science.gov (United States)

Carroll Cave, located in Camden County, Missouri, is the largest known cave formed in the Gasconade Dolomite of the Salem Plateau. Despite extensive visitation over the last 50 years and multiple survey efforts, a comprehensive map of the cave has never been produced. In 2002, the Carroll Cave Conse...

Solar-forced diurnal regulation of cave drip rates via phreatophyte evapotranspiration

Directory of Open Access Journals (Sweden)

K. Coleborn

2016-11-01

Full Text Available We present results of a detailed study of drip rate variations at 12 drip discharge sites in Glory Hole Cave, New South Wales, Australia. Our novel time series analysis, using the wavelet synchrosqueezed transform, reveals pronounced oscillations at daily and sub-daily frequencies occurring in 8 out of the 12 monitored sites. These oscillations were not spatially or temporally homogenous, with different drip sites exhibiting such behaviour at different times of year in different parts of the cave. We test several hypotheses for the cause of the oscillations, including variations in pressure gradients between karst and cave due to cave breathing effects or atmospheric and earth tides, variations in hydraulic conductivity due to changes in viscosity of water with daily temperature oscillations, and solar-driven daily cycles of vegetative (phreatophytic transpiration. We conclude that the only hypothesis consistent with the data and hydrologic theory is that daily oscillations are caused by solar-driven pumping by phreatophytic trees which are abundant at the site. The daily oscillations are not continuous and occur sporadically in short bursts (2–14 days throughout the year due to non-linear modification of the solar signal via complex karst architecture. This is the first indirect observation leading to the hypothesis of tree water use in cave drip water. It has important implications for karst hydrology in regards to developing a new protocol to determine the relative importance of trends in drip rate, such as diurnal oscillations, and how these trends change over timescales of weeks to years. This information can also be used to infer karst architecture. This study demonstrates the importance of vegetation on recharge dynamics, information that will inform both process-based karst models and empirical estimation approaches. Our findings support a growing body of research exploring the impact of trees on speleothem paleoclimate proxies.

Exposure to radon in Cuban tourist caves

International Nuclear Information System (INIS)

Carrazana Gonzalez, Jorge; Dominguez Ley, Orlando; Gil Castillo, Reinaldo; Molerio Leon, Leslie

2008-01-01

With the objective of estimating the dose, due to Radon-222, received by tour guides and other people who work inside some of the most important tourist caves in the Republic of Cuba, measurements of radon concentrations were carried out in four of these caves: Santo Tomas Cave, Tapiada Cave, Del Indio Cave and Jose Miguel Cave. All these caves are located in the Vinales Valley (Pinar del Rio City), a very important tourist area in the country. The relationship among radon concentration, the concentration of natural radionuclides inside the caves and the geologic characteristics of the specific locations was analyzed. In order to select the most appropriates measurement places, different criteria were taken into account: representatives points of the geology of the caves, level of gamma radiation, exchange of air, places of work inside the caves (cafeterias, restaurants and shops) and places more frequently visited by tour guides. The maximum radon concentration was found in Jose Miguel Cave with a value of 220 Bq/m 3 . The measurement of gamma dose rate inside the caves was carried out with a scintillation detector type Scintrex BGS-3 previously calibrated at SSI, Sweden. The radon concentrations were measured with the equipment Alpha Guard PQ2000/MC50 and SARAD RM2000, both also calibrated at SSI, Sweden. The obtained results indicated that, in the studied caves, the annual dose is not greater than 1 mSv considering a work year of 2000 hours. (author)

Algorithms for MDC-based multi-locus phylogeny inference: beyond rooted binary gene trees on single alleles.

Science.gov (United States)

Yu, Yun; Warnow, Tandy; Nakhleh, Luay

2011-11-01

One of the criteria for inferring a species tree from a collection of gene trees, when gene tree incongruence is assumed to be due to incomplete lineage sorting (ILS), is Minimize Deep Coalescence (MDC). Exact algorithms for inferring the species tree from rooted, binary trees under MDC were recently introduced. Nevertheless, in phylogenetic analyses of biological data sets, estimated gene trees may differ from true gene trees, be incompletely resolved, and not necessarily rooted. In this article, we propose new MDC formulations for the cases where the gene trees are unrooted/binary, rooted/non-binary, and unrooted/non-binary. Further, we prove structural theorems that allow us to extend the algorithms for the rooted/binary gene tree case to these cases in a straightforward manner. In addition, we devise MDC-based algorithms for cases when multiple alleles per species may be sampled. We study the performance of these methods in coalescent-based computer simulations.

Simulated oxygen isotopes in cave drip water and speleothem calcite in European caves

Directory of Open Access Journals (Sweden)

A. Wackerbarth

2012-11-01

Full Text Available Interpreting stable oxygen isotope (δ¹⁸O records from stalagmites is still one of the complex tasks in speleothem research. Here, we present a novel model-based approach, where we force a model describing the processes and modifications of δ¹⁸O from rain water to speleothem calcite (Oxygen isotope Drip water and Stalagmite Model – ODSM with the results of a state-of-the-art atmospheric general circulation model enhanced by explicit isotope diagnostics (ECHAM5-wiso. The approach is neither climate nor cave-specific and allows an integrated assessment of the influence of different varying climate variables, e.g. temperature and precipitation amount, on the isotopic composition of drip water and speleothem calcite.

First, we apply and evaluate this new approach under present-day climate conditions using observational data from seven caves from different geographical regions in Europe. Each of these caves provides measured δ¹⁸O values of drip water and speleothem calcite to which we compare our simulated isotope values. For six of the seven caves modeled δ¹⁸O values of drip water and speleothem calcite are in good agreement with observed values. The mismatch of the remaining caves might be caused by the complexity of the cave system, beyond the parameterizations included in our cave model.

We then examine the response of the cave system to mid-Holocene (6000 yr before present, 6 ka climate conditions by forcing the ODSM with ECHAM5-wiso results from 6 ka simulations. For a set of twelve European caves, we compare the modeled mid-Holocene-to-modern difference in speleothem calcite δ¹⁸O to available measurements. We show that the general European changes are simulated well. However, local discrepancies are found, and might be explained either by a too low model resolution, complex local soil-atmosphere interactions affecting evapotranspiration or by cave specific factors

Energy expenditure in caving.

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Giorgia Antoni

Full Text Available The aim of this study was to determine the energy expenditure of a group of cavers of both genders and different ages and experience during a 10 hour subterranean exploration, using portable metabolimeters. The impact of caving activity on body composition and hydration were also assessed through bioelectrical impedance, and nutritional habits of cavers surveyed. During cave activity, measured total energy expenditure (TEE was in the range 225-287 kcal/h for women-men (MET = 4.1, respectively; subjects had an energy intake from food in the range 1000-1200 kcal, thus inadequate to restore lost calories. Bayesian statistical analysis estimated the effect of predictive variables on TEE, revealing that experienced subjects had a 5% lower TEE than the less skilled ones and that women required a comparatively larger energy expenditure than men to perform the same task. BIVA (bioelectrical impedance vector analysis showed that subjects were within the range of normal hydration before and after cave activity, but bioelectrical changes indicated a reduction of extracellular water in men, which might result in hypo-osmolal dehydration in the case of prolonged underground exercise. All these facts should be considered when planning cave explorations, preparing training programs for subjects practising caving, and optimizing a diet for cavers. Further, information gathered through this study could be of value to reduce accidents in caves related to increase in fatigue.

Investigation of clay sediments and bedrock morphology in caves with seismic traveltime tomography: an application at Alepotrypa Cave (Diros, Greece

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Lazaros Polymenakos

2017-01-01

Full Text Available The deposition of unconsolidated clay sediments in caves, in relation to the buried morphology of the karstic conduit, are important parameters for the study of cave evolution. We introduce the application of an active seismic imaging technique to investigate the clay deposits and bedrock morphology in caves. Seismic traveltime tomography, applied for the first time in cave studies, can assist with the interpretation of cave geomorphology. Utilizing the P-wave velocity contrast between the clay sediments and the surrounding rock mass, we map the buried rock surface and significant sediment interfaces and provide an estimate of the sediment thickness and volume. Our study focuses on the Alepotrypa Cave located in Diros (Peloponnese, Greece, revealing important information for the evolution of the cave. The proposed technique could be applied in caves with significant clay deposits, in order to constrain the clay volume and reconstruct the buried floor shape of the cave. The technique exploits fully the ground morphology and access points in a cave, so it is suitable for a detailed three-dimensional exploration of cave deposits and the underlying cave morphology.

GEOMORPHIC ANALYSIS OF MAWSMAI CAVE, MEGHALAYA, INDIA

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Vibhash Chandra Jha

2011-12-01

Full Text Available ABSTRACT Caving is an art which can be best experienced in the mystic Mawsmai Cave of Meghalaya. This Cave is fast becoming a hot tourist’s destination offering great adventurous opportunity to the tourists. The cave is located in the East Khasi Hill region near Cherrapunjee and is made of limestone. The emotion of thrill heightens after entering the cave. The entrance has a narrow vertical opening and is well lit. Due to its location in the world’s largest rainfall region, dripping of water from the cave roofs occurs almost throughout the year. The formation of stalactites and stalagmites create wonderful phenomena specially found in this caves. The conspicuous pillars formed due to the joining of the roof and the floors are an awe-inspiring creativity of the creator of this world. Keywords: Cave, Limestone, Stalactite, Stalagmite, Pillar, Solution.

Cave Tourism: The Potential of Asar Cave as a Natural Tourism Asset at Lenggong Valley, Perak

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Rindam Main

2014-01-01

Full Text Available The Lenggong Valley, from a standpoint of natural tourism research, presents strengths, weaknesses, opportunities and challenges that can be utilized to help increase the opportunities for the local community to increase their standard of living. Asar Cave comprises one of the caves that are found in Lenggong. A series of external studies have been done on Asar Cave in order to measure its potential for natural tourism in Lenggong. The objective of this study is to discuss caves as a natural resource that has great potential in the growth of the economy of the residents of the Lenggong Valley. Marketing caves as a source of nature tourism helps the government’s achievements in National Key Result Areas, apart from being a form of environmental control as well as helping to increase awareness about environmental education, specifically those associated with caves. The research results find that SWOT analysis presents huge potential for caves to become a source of nature tourism development in Lenggong. Great potential can also be seen from a standpoint of increasing the standard of living of its residents through their involvement in the tourism sector based on local natural assets.

The Mammoth Cave system, Kentucky, USA; El sistema de la Mammoth Cave, Kentucky, EE.UU

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Palmer, A. N.

2016-07-01

Mammoth Cave is the main attraction of Mammoth Cave National Park. For several decades it has been the longest known cave in the world and currently contains 652 km in 2016 of surveyed passages. It is located in the heart of an extensive karst plateau, in which the stratal dip averages only one degree. The cave is part of a drainage basin of more than 200 km{sup 2}. The cave has been known to local inhabitants for several millennia and contains a rich trove of archaeological and historical artifacts. It contains many speleo biota including several rare and endangered species and has been designated a World Heritage Site and an International Biosphere Reserve (UNESCO). Its many passage levels and sediments contain a record of the fluvial history of most of south-eastern North America. (Author)

Instrumenting caves to collect hydrologic and geochemical data: case study from James Cave, Virginia

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Schreiber, Madeline E.; Schwartz, Benjamin F.; Orndorff, William; Doctor, Daniel H.; Eagle, Sarah D.; Gerst, Jonathan D.

2015-01-01

Karst aquifers are productive groundwater systems, supplying approximately 25 % of the world’s drinking water. Sustainable use of this critical water supply requires information about rates of recharge to karst aquifers. The overall goal of this project is to collect long-term, high-resolution hydrologic and geochemical datasets at James Cave, Virginia, to evaluate the quantity and quality of recharge to the karst system. To achieve this goal, the cave has been instrumented for continuous (10-min interval) measurement of the (1) temperature and rate of precipitation; (2) temperature, specific conductance, and rate of epikarst dripwater; (3) temperature of the cave air; and (4) temperature, conductivity, and discharge of the cave stream. Instrumentation has also been installed to collect both composite and grab samples of precipitation, soil water, the cave stream, and dripwater for geochemical analysis. This chapter provides detailed information about the instrumentation, data processing, and data management; shows examples of collected datasets; and discusses recommendations for other researchers interested in hydrologic and geochemical monitoring of cave systems. Results from the research, briefly described here and discussed in more detail in other publications, document a strong seasonality of the start of the recharge season, the extent of the recharge season, and the geochemistry of recharge.

Petrographic and geochemical study on cave pearls from Kanaan Cave (Lebanon

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Nader Fadi H.

2007-01-01

Full Text Available The Kanaan cave is situated at the coastal zone, north of Beirut City (capital of Lebanon. The cave is located within the upper part of the Jurassic Kesrouane Formation (Liassic to Oxfordian which consists mainly of micritic limestone. Twenty seven cave pearls were subjected to petrographic (conventional and scanning electron microscopy and geochemical analyses (major/trace elements and stable isotopes. The cave pearls were found in an agitated splash-pool with low mud content. They are believed to have formed through chemical precipitation of calcite in water over-saturated with calcium. The nucleus and micritic laminae show δ18OV-PDB values of about -5.0‰ and δ13C V-PDB values of -11.8‰, while the surrounding calcite spar laminae resulted in δ18OV-PDB ranging between -5.3 and -5.2‰, and δ13C V-PDB between -12.3 and -12.1‰. A genesis/diagenesis model for these speleothems is proposed involving recrystallization which has selectively affected the inner layers of the cave pearls. This is chiefly invoked by sparry calcite crystals ‘invading’ the inner micrite cortical laminae and the nuclei (cross-cutting the pre-existing mud-envelopes, and the slight depletion in δ18O values from inner to outer cortical layers. The calculated δ18OV-SMOW of the water (-4.2‰ matches with data on meteoric water signature for the central eastern Mediterranean region.

Environmental conditions of Borra Cave, Visakhapattanam, India

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Haraprasad Bairagya

2014-05-01

Full Text Available Caving is an art which can be best experienced in the mystic Borra of Eastern Ghats and ranked as the second largest cave of India just after Belum Caves situated in the same state Andhrapradesh, India. This Cave is fast becoming a hot tourist?s destination offering great adventurous opportunity to the tourists in the Eastern Ghats. The cave is located in the Ananthagiri hills of the Eastern Ghats region near Visakhapattanam and is made of limestone. The emotion of thrill heightens after entering the cave. The entrance has a narrow vertical opening and is well lit. Due to its location in the sub-equatorial region, dripping of water from the cave roofs occurs almost throughout the year. The formation of stalactites and stalagmites create wonderful phenomena specially found in this cave. The conspicuous pillars formed due to the joining of the roof and the floors are an awe-inspiring creativity of the creator of this world. Various viruses and bacteria are in the cave interior along with different other creatures. The Borra cave helps the Govt. of Andhra Pradesh, India, to earn huge economic benefits for the sake of tourism industry. DOI: http://dx.doi.org/10.3126/ije.v3i2.10526 International Journal of the Environment Vol.3(2 2014: 150-166

Estimation of tool wear length in finish milling using a fuzzy inference algorithm

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Ko, Tae Jo; Cho, Dong Woo

1993-10-01

The geometric accuracy and surface roughness are mainly affected by the flank wear at the minor cutting edge in finish machining. A fuzzy estimator obtained by a fuzzy inference algorithm with a max-min composition rule to evaluate the minor flank wear length in finish milling is introduced. The features sensitive to minor flank wear are extracted from the dispersion analysis of a time series AR model of the feed directional acceleration of the spindle housing. Linguistic rules for fuzzy estimation are constructed using these features, and then fuzzy inferences are carried out with test data sets under various cutting conditions. The proposed system turns out to be effective for estimating minor flank wear length, and its mean error is less than 12%.

Cave monitoring in the Béke and Baradla caves (Northeastern Hungary: implications for the conditions for the formation cave carbonates

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György Czuppon

2018-01-01

Full Text Available In order to use speleothems in the reconstruction of past climate and environmental changes it is necessary to understand the environmental and hydrological processes that determine the physico-chemical conditions of carbonate precipitation and hence speleothem formation. Therefore, in this study an extended monitoring program was conducted in the Béke and Baradla caves located in the Aggtelek region (Northeastern Hungary. The studied caves are rich in speleothem and flowstone occurrences with great potential for paleoclimatology studies. The monitoring activity included measurements of atmospheric and cave temperatures, CO2 concentration in cave air, as well as chemical and isotopic compositions of water samples (drip water, precipitation and in situ carbonate precipitates. The hydrogen and oxygen isotope compositions of drip waters showed no seasonal variation at any of the collection sites, indicating a well-mixed karstic aquifer. This implies that the isotopic compositions of local speleothems were able to record multiannual isotopic changes inherited from stable isotopes in the drip water. CO2 concentration showed seasonality (high values in summer and low values in winter in both caves, likely affecting carbonate precipitation or corrosion and consequently stalagmite growth. Systematic variations among Mg/Ca and Sr/Ca, Na/Ca, and Si/Ca element ratios were detected in the drip water suggesting Prior Calcite Precipitation (PCP. As PCP is characteristic of periods of reduced infiltration during drier weather conditions, the variations in drip water chemistry and drip rates indicate that the hydrological conditions also varied significantly during the studied period. This hydrological variability appears to affect not only trace element composition but also the isotopic composition of modern carbonate precipitates. In summary, these findings imply that the speleothems from the studied caves were able to record the hydrological changes

Spotted hyena and steppe lion predation behaviours on cave bears of Europe - ?Late Quaternary cave bear extinction as result of predator stress

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Diedrich, Cajus G.

2010-05-01

Cave bears hibernated in caves all over Eurasia (e.g. Rabeder et al., 2000) including alpine regions using mainly larger caves for this purpose. Late Quaternary spotted hyenas Crocuta crocuta spelaea instead occupied mainly areas close to the cave entrances as their dens (Diedrich and Žák 2006, Diedrich 2010). The largest predator, the steppe lion Panthera leo spelaea was only a sporadic cave dweller (Diedrich 2007b, 2009b). His presence and its remains from caves all over Europe can be recently explained best as result of imported carcasses after killing by their largest antagonists, the Late Quaternary spotted hyenas. In some cases the kill might have happened in the hyena den cave itself during the theft of prey remains by lions (Diedrich 2009a). Another reason of their remains in caves of Europe is the hunting onto the herbivorous cave bears, especially during hibernation times, when megafauna prey was less available in the open environments (Diedrich 2009c). These lion remains from caves of Europe, nearly all of which were from adult animals, provide evidence of active predation by lions onto cave bears even in medium high alpine regions (Diedrich 2009b, in review). Lion skeletons in European cave bear dens were therefore often found amongst originally articulated cave bear skeletons or scattered cave bear remains and even close to their hibernation nests (Diedrich et al. 2009c, in review). Not only lions fed on cave bears documented mainly by the large quantities of chewed, punctured and crushed cave bear long-bones; even damaged skulls reveal that hyenas scavenged primarily on cave bear carcasses which were mainly responsible for the destruction of their carcasses and bones (Diedrich 2005, 2009d). Predation and scavenging on cave bears by the two largest Late Quaternary predators C. c. spelaea and P. l. spelaea explains well the large quantity of fragmented cave bear bones over all European caves in low to medium high mountainous elevations, whereas in

Bacterial community survey of sediments at Naracoorte Caves, Australia

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Ball Andrew S.

2012-07-01

Full Text Available Bacterial diversity in sediments at UNESCO World Heritage listed Naracoorte Caves was surveyed as part of an investigation carried out in a larger study on assessing microbial communities in caves. Cave selection was based on tourist accessibility; Stick Tomato and Alexandra Cave (> 15000 annual visits and Strawhaven Cave was used as control (no tourist access. Microbial analysis showed that Bacillus was the most commonly detected microbial genus by culture dependent and independent survey of tourist accessible and inaccessible areas of show (tourist accessible and control caves. Other detected sediment bacterial groups were assigned to the Firmicutes, Actinobacteria and Proteobacteria. The survey also showed differences in bacterial diversity in caves with human access compared to the control cave with the control cave having unique microbial sequences (Acinetobacter, Agromyces, Micrococcus and Streptomyces. The show caves had higher bacterial counts, different 16S rDNA based DGGE cluster patterns and principal component groupings compared to Strawhaven. Different factors such as human access, cave use and configurations could have been responsible for the differences observed in the bacterial community cluster patterns (tourist accessible and inaccessible areas of these caves. Cave sediments can therefore act as reservoirs of microorganisms. This might have some implications on cave conservation activities especially if these sediments harbor rock art degrading microorganisms in caves with rock art.

Is radon emission in caves causing deletions in satellite DNA sequences of cave-dwelling crickets?

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Giuliana Allegrucci

Full Text Available The most stable isotope of radon, 222Rn, represents the major source of natural radioactivity in confined environments such as mines, caves and houses. In this study, we explored the possible radon-related effects on the genome of Dolichopoda cave crickets (Orthoptera, Rhaphidophoridae sampled in caves with different concentrations of radon. We analyzed specimens from ten populations belonging to two genetically closely related species, D. geniculata and D. laetitiae, and explored the possible association between the radioactivity dose and the level of genetic polymorphism in a specific family of satellite DNA (pDo500 satDNA. Radon concentration in the analyzed caves ranged from 221 to 26,000 Bq/m3. Specimens coming from caves with the highest radon concentration showed also the highest variability estimates in both species, and the increased sequence heterogeneity at pDo500 satDNA level can be explained as an effect of the mutation pressure induced by radon in cave. We discovered a specific category of nuclear DNA, the highly repetitive satellite DNA, where the effects of the exposure at high levels of radon-related ionizing radiation are detectable, suggesting that the satDNA sequences might be a valuable tool to disclose harmful effects also in other organisms exposed to high levels of radon concentration.

Fish mitigate trophic depletion in marine cave ecosystems.

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Bussotti, Simona; Di Franco, Antonio; Bianchi, Carlo Nike; Chevaldonné, Pierre; Egea, Lea; Fanelli, Emanuela; Lejeusne, Christophe; Musco, Luigi; Navarro-Barranco, Carlos; Pey, Alexis; Planes, Serge; Vieux-Ingrassia, Jean Vincent; Guidetti, Paolo

2018-06-15

Dark marine habitats are often characterized by a food-limited condition. Peculiar dark habitats include marine caves, characterized by the absence of light and limited water flow, which lead to reduced fluxes of organic matter for cave-dwelling organisms. We investigated whether the most abundant and common cave-dwelling fish Apogon imberbis has the potential to play the role of trophic vector in Mediterranean marine caves. We first analysed stomach contents to check whether repletion changes according to a nycthemeral cycle. We then identified the prey items, to see whether they belong to species associated with cave habitats or not. Finally, we assessed whether A. imberbis moves outside marine caves at night to feed, by collecting visual census data on A. imberbis density both inside and outside caves, by day and by night. The stomach repletion of individuals sampled early in the morning was significantly higher than later in the day. Most prey were typical of habitats other than caves. A. imberbis was on average more abundant within caves during the day and outside during the night. Our study supports the hypothesis regarding the crucial trophic role of A. imberbis in connecting Mediterranean marine caves with external habitats.

Cave breakdown by vadose weathering.

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Osborne R. Armstrong L.

2002-01-01

Full Text Available Vadose weathering is a significant mechanism for initiating breakdown in caves. Vadose weathering of ore bodies, mineral veins, palaeokarst deposits, non-carbonate keystones and impure, altered or fractured bedrock, which is intersected by caves, will frequently result in breakdown. Breakdown is an active, ongoing process. Breakdown occurs throughout the vadose zone, and is not restricted to large diameter passages, or to cave ceilings. The surfaces of disarticulated blocks are commonly coated, rather than having fresh broken faces, and blocks continue to disintegrate after separating from the bedrock. Not only gypsum, but also hydromagnesite and aragonite are responsible for crystal wedging. It is impossible to study or identify potential breakdown foci by surface surveys alone, in-cave observation and mapping are essential.

The Mammoth Cave system, Kentucky, USA

International Nuclear Information System (INIS)

Palmer, A. N.

2016-01-01

Mammoth Cave is the main attraction of Mammoth Cave National Park. For several decades it has been the longest known cave in the world and currently contains 652 km in 2016 of surveyed passages. It is located in the heart of an extensive karst plateau, in which the stratal dip averages only one degree. The cave is part of a drainage basin of more than 200 km 2 . The cave has been known to local inhabitants for several millennia and contains a rich trove of archaeological and historical artifacts. It contains many speleo biota including several rare and endangered species and has been designated a World Heritage Site and an International Biosphere Reserve (UNESCO). Its many passage levels and sediments contain a record of the fluvial history of most of south-eastern North America. (Author)

Solar activity influence on air temperature regimes in caves

Science.gov (United States)

Stoeva, Penka; Mikhalev, Alexander; Stoev, Alexey

Cave atmospheres are generally included in the processes that happen in the external atmosphere as circulation of the cave air is connected with the most general circulation of the air in the earth’s atmosphere. Such isolated volumes as the air of caves are also influenced by the variations of solar activity. We discuss cave air temperature response to climate and solar and geomagnetic activity for four show caves in Bulgaria studied for a period of 46 years (1968 - 2013). Everyday noon measurements in Ledenika, Saeva dupka, Snezhanka and Uhlovitsa cave have been used. Temperatures of the air in the zone of constant temperatures (ZCT) are compared with surface temperatures recorded at meteorological stations situated near about the caves - in the towns of Vratsa, Lovech, Peshtera and Smolyan, respectively. For comparison, The Hansen cave, Middle cave and Timpanogos cave from the Timpanogos Cave National Monument, Utah, USA situated nearly at the same latitude have also been examined. Our study shows that the correlation between cave air temperature time series and sunspot number is better than that between the cave air temperature and Apmax indices; that t°ZCT is rather connected with the first peak in geomagnetic activity, which is associated with transient solar activity (CMEs) than with the second one, which is higher and connected with the recurrent high speed streams from coronal holes. Air temperatures of all examined show caves, except the Ledenika cave, which is ice cave show decreasing trends. On the contrary, measurements at the meteorological stations show increasing trends in the surface air temperatures. The trend is decreasing for the Timpanogos cave system, USA. The conclusion is that surface temperature trends depend on the climatic zone, in which the cave is situated, and there is no apparent relation between temperatures inside and outside the caves. We consider possible mechanism of solar cosmic rays influence on the air temperatures in caves

World Register of marine Cave Species (WoRCS: a new Thematic Species Database for marine and anchialine cave biodiversity

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Vasilis Gerovasileiou

2016-09-01

Full Text Available Scientific exploration of marine cave environments and anchialine ecosystems over recent decades has led to outstanding discoveries of novel taxa, increasing our knowledge of biodiversity. However, biological research on underwater caves has taken place only in a few areas of the world and relevant information remains fragmented in isolated publications and databases. This fragmentation makes assessing the conservation status of marine cave species especially problematic, and this issue should be addressed urgently given the stresses resulting from planned and rampant development in the coastal zone worldwide. The goal of the World Register of marine Cave Species (WoRCS initiative is to create a comprehensive taxonomic and ecological database of known species from marine caves and anchialine systems worldwide and to present this as a Thematic Species Database (TSD of the World Register of marine Species (WoRMS. WoRCS will incorporate ecological data (e.g., type of environment, salinity regimes, and cave zone as well as geographical information on the distribution of species in cave and anchialine environments. Biodiversity data will be progressively assembled from individual database sources at regional, national or local levels, as well as from literature sources (estimate: >20,000 existing records of cave-dwelling species scattered in several databases. Information will be organized in the WoRCS database following a standard glossary based on existing terminology. Cave-related information will be managed by the WoRCS thematic editors with all data dynamically linked to WoRMS and its team of taxonomic editors. In order to mobilize data into global biogeographic databases, a Gazetteer of the Marine and Anchialine Caves of the World will be established. The presence records of species could be eventually georeferenced for submission to the Ocean Biogeographic Information System (OBIS and constitute an important dataset for biogeographical and

Morphometric variation in the papionin muzzle and the biochronology of the South African Plio-Pleistocene karst cave deposits.

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Gilbert, Christopher C; Grine, Frederick E

2010-03-01

Papionin monkeys are widespread, relatively common members of Plio-Pleistocene faunal assemblages across Africa. For these reasons, papionin taxa have been used as biochronological indicators by which to infer the ages of the South African karst cave deposits. A recent morphometric study of South African fossil papionin muzzle shape concluded that its variation attests to a substantial and greater time depth for these sites than is generally estimated. This inference is significant, because accurate dating of the South African cave sites is critical to our knowledge of hominin evolution and mammalian biogeographic history. We here report the results of a comparative analysis of extant papionin monkeys by which variability of the South African fossil papionins may be assessed. The muzzles of 106 specimens representing six extant papionin genera were digitized and interlandmark distances were calculated. Results demonstrate that the overall amount of morphological variation present within the fossil assemblage fits comfortably within the range exhibited by the extant sample. We also performed a statistical experiment to assess the limitations imposed by small sample sizes, such as typically encountered in the fossil record. Results suggest that 15 specimens are sufficient to accurately represent the population mean for a given phenotype, but small sample sizes are insufficient to permit the accurate estimation of the population standard deviation, variance, and range. The suggestion that the muzzle morphology of fossil papionins attests to a considerable and previously unrecognized temporal depth of the South African karst cave sites is unwarranted.

An Investigation of Meromixis in Cave Pools, Lechuguilla Cave, New Mexico.

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David B. Levy

2008-07-01

Full Text Available Chemical characteristics of permanent stratification in cave pools (meromixis may provide insight into the geochemical origin and evolution of cave pool waters. The objective of this study was to test the hypothesis that some pools in Lechuguilla Cave may be subject to ectogenic meromixis, where permanent chemical stratification is induced by input of relatively saline or fresh water from an external source. However, because organic C concentrations in Lechuguilla waters are low (typically 0.9 m, and are probably the result of localized and transient atmospheric CO2(g concentrations. At LOBG, an EC increase of 93 µS cm-1 at the 0.9-m depth suggests meromictic conditions which are ectogenic, possibly due to surface inflow of fresh water as drips or seepage into a pre-existing layer of higher salinity.

Hydrological characterization of cave drip waters in a porous limestone: Golgotha Cave, Western Australia

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Mahmud, Kashif; Mariethoz, Gregoire; Baker, Andy; Treble, Pauline C.

2018-02-01

Cave drip water response to surface meteorological conditions is complex due to the heterogeneity of water movement in the karst unsaturated zone. Previous studies have focused on the monitoring of fractured rock limestones that have little or no primary porosity. In this study, we aim to further understand infiltration water hydrology in the Tamala Limestone of SW Australia, which is Quaternary aeolianite with primary porosity. We build on our previous studies of the Golgotha Cave system and utilize the existing spatial survey of 29 automated cave drip loggers and a lidar-based flow classification scheme, conducted in the two main chambers of this cave. We find that a daily sampling frequency at our cave site optimizes the capture of drip variability with the least possible sampling artifacts. With the optimum sampling frequency, most of the drip sites show persistent autocorrelation for at least a month, typically much longer, indicating ample storage of water feeding all stalactites investigated. Drip discharge histograms are highly variable, showing sometimes multimodal distributions. Histogram skewness is shown to relate to the wetter-than-average 2013 hydrological year and modality is affected by seasonality. The hydrological classification scheme with respect to mean discharge and the flow variation can distinguish between groundwater flow types in limestones with primary porosity, and the technique could be used to characterize different karst flow paths when high-frequency automated drip logger data are available. We observe little difference in the coefficient of variation (COV) between flow classification types, probably reflecting the ample storage due to the dominance of primary porosity at this cave site. Moreover, we do not find any relationship between drip variability and discharge within similar flow type. Finally, a combination of multidimensional scaling (MDS) and clustering by k means is used to classify similar drip types based on time series

Hydrological characterization of cave drip waters in a porous limestone: Golgotha Cave, Western Australia

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K. Mahmud

2018-02-01

Full Text Available Cave drip water response to surface meteorological conditions is complex due to the heterogeneity of water movement in the karst unsaturated zone. Previous studies have focused on the monitoring of fractured rock limestones that have little or no primary porosity. In this study, we aim to further understand infiltration water hydrology in the Tamala Limestone of SW Australia, which is Quaternary aeolianite with primary porosity. We build on our previous studies of the Golgotha Cave system and utilize the existing spatial survey of 29 automated cave drip loggers and a lidar-based flow classification scheme, conducted in the two main chambers of this cave. We find that a daily sampling frequency at our cave site optimizes the capture of drip variability with the least possible sampling artifacts. With the optimum sampling frequency, most of the drip sites show persistent autocorrelation for at least a month, typically much longer, indicating ample storage of water feeding all stalactites investigated. Drip discharge histograms are highly variable, showing sometimes multimodal distributions. Histogram skewness is shown to relate to the wetter-than-average 2013 hydrological year and modality is affected by seasonality. The hydrological classification scheme with respect to mean discharge and the flow variation can distinguish between groundwater flow types in limestones with primary porosity, and the technique could be used to characterize different karst flow paths when high-frequency automated drip logger data are available. We observe little difference in the coefficient of variation (COV between flow classification types, probably reflecting the ample storage due to the dominance of primary porosity at this cave site. Moreover, we do not find any relationship between drip variability and discharge within similar flow type. Finally, a combination of multidimensional scaling (MDS and clustering by k means is used to classify similar drip

Grammatical inference algorithms, routines and applications

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Wieczorek, Wojciech

2017-01-01

This book focuses on grammatical inference, presenting classic and modern methods of grammatical inference from the perspective of practitioners. To do so, it employs the Python programming language to present all of the methods discussed. Grammatical inference is a field that lies at the intersection of multiple disciplines, with contributions from computational linguistics, pattern recognition, machine learning, computational biology, formal learning theory and many others. Though the book is largely practical, it also includes elements of learning theory, combinatorics on words, the theory of automata and formal languages, plus references to real-world problems. The listings presented here can be directly copied and pasted into other programs, thus making the book a valuable source of ready recipes for students, academic researchers, and programmers alike, as well as an inspiration for their further development.>.

Discovery of a diverse cave flora in China

Science.gov (United States)

Wen, Fang

2018-01-01

Few studies document plants in caves. Our field observations of a widespread and seemingly angiosperm-rich cave flora in SW China lead us to test the following hypotheses, 1) SW China caves contain a diverse vascular plant flora, 2) that this is a relic of a largely absent forest type lacking endemic species, and 3) that the light environment plants occupy in caves is not distinct from non-cave habitats. To do so we surveyed 61 caves and used species accumulation curves (SAC) to estimate the total diversity of this flora and used a subsample of 14 caves to characterise the light environment. We used regional floras and existing conservation assessments to evaluate the conservation value of this flora. We used observations on human disturbance within caves to evaluate anthropogenic activities. Four-hundred-and-eighteen vascular plant species were documented with SACs predicting a total diversity of 529–846. Ninety-three percent of the species documented are known karst forest species, 7% are endemic to caves and 81% of the species are angiosperms. We demonstrate that the light environment in caves is distinct to that of terrestrial habitats and that a subset of the flora likely grow in the lowest light levels documented for vascularised plants. Our results suggest that the proportion of species threatened with extinction is like that for the terrestrial habitat and that almost half of the entrance caverns sampled showed signs of human disturbance. We believe that this is the first time that such an extensive sample of cave flora has been undertaken and that such a diverse vascular plant flora has been observed in caves which we predict occurs elsewhere in SE Asia. We argue that the cave flora is an extension of the karst forest understory present prior to catastrophic deforestation in the 20thC. We suggest that within SW China caves serve as both refuges and a valuable source of germplasm for the restoration of karst forest. We also propose that caves represent a

Discovery of a diverse cave flora in China.

Science.gov (United States)

Monro, Alexandre K; Bystriakova, Nadia; Fu, Longfei; Wen, Fang; Wei, Yigang

2018-01-01

Few studies document plants in caves. Our field observations of a widespread and seemingly angiosperm-rich cave flora in SW China lead us to test the following hypotheses, 1) SW China caves contain a diverse vascular plant flora, 2) that this is a relic of a largely absent forest type lacking endemic species, and 3) that the light environment plants occupy in caves is not distinct from non-cave habitats. To do so we surveyed 61 caves and used species accumulation curves (SAC) to estimate the total diversity of this flora and used a subsample of 14 caves to characterise the light environment. We used regional floras and existing conservation assessments to evaluate the conservation value of this flora. We used observations on human disturbance within caves to evaluate anthropogenic activities. Four-hundred-and-eighteen vascular plant species were documented with SACs predicting a total diversity of 529-846. Ninety-three percent of the species documented are known karst forest species, 7% are endemic to caves and 81% of the species are angiosperms. We demonstrate that the light environment in caves is distinct to that of terrestrial habitats and that a subset of the flora likely grow in the lowest light levels documented for vascularised plants. Our results suggest that the proportion of species threatened with extinction is like that for the terrestrial habitat and that almost half of the entrance caverns sampled showed signs of human disturbance. We believe that this is the first time that such an extensive sample of cave flora has been undertaken and that such a diverse vascular plant flora has been observed in caves which we predict occurs elsewhere in SE Asia. We argue that the cave flora is an extension of the karst forest understory present prior to catastrophic deforestation in the 20thC. We suggest that within SW China caves serve as both refuges and a valuable source of germplasm for the restoration of karst forest. We also propose that caves represent a

Helium Isotopes and Noble Gas Abundances of Cave Dripping Water in Three Caves in East Asia

Science.gov (United States)

Chen, A. T.; Shen, C. C.; Tan, M.; Li, T.; Uemura, R.; Asami, R.

2015-12-01

Paleo-temperature recorded in nature archives is a critical parameter to understand climate change in the past. With advantages of unique inert chemical characteristics and sensitive solubilities with temperature, dissolved noble gases in speleothem inclusion water were recently proposed to retrieve terrestrial temperature history. In order to accurately apply this newly-developed speleothem noble gas temperature (NGT) as a reliable proxy, a fundamental issue about behaviors of noble gases in the karst should be first clarified. In this study, we measured noble gas contents in air and dripping water to evaluate any ratio deviation between noble gases. Cave dripping water samples was collected from three selected caves, Shihua Cave in northern China, Furong Cave in southwestern, and Gyukusen Cave in an island located in the western Pacific. For these caves are characterized by a thorough mixing and long-term storage of waters in a karst aquifer by the absence of seasonal oxygen isotope shifts. Ratios of dripping water noble gases are statistically insignificant from air data. Helium isotopic ratios in the dripping water samples match air value. The results indicate that elemental and isotopic signatures of noble gases from air can be frankly preserved in the epikarst and support the fidelity of NGT techniques.

Radon survey in caves from Mallorca Island, Spain

Energy Technology Data Exchange (ETDEWEB)

Dumitru, Oana A. [Department of Geology, Babeș-Bolyai University, Kogălniceanu 1, 400084 Cluj-Napoca (Romania); School of Geosciences, University of South Florida, 4202 E. Fowler Ave., NES 107 Tampa (United States); Onac, Bogdan P. [School of Geosciences, University of South Florida, 4202 E. Fowler Ave., NES 107 Tampa (United States); Fornós, Joan J. [Departament de Ciències de la Terra, Universitat de les Illes Balears, Crta. Valldemossa km 7.5, 07122 Palma (Mallorca) (Spain); Cosma, Constantin [Environmental Radioactivity and Nuclear Dating Center, Babeș-Bolyai University, Fântânele 30, 400294 Cluj-Napoca (Romania); Ginés, Angel; Ginés, Joaquín [Departament de Ciències de la Terra, Universitat de les Illes Balears, Crta. Valldemossa km 7.5, 07122 Palma (Mallorca) (Spain); Merino, Antoni [Grup Espeleològic de Llubí, Federació Balear d' Espeleologia, c/Uruguai s/n, Palma Arena, 07010 Palma, Illes Balears (Spain)

2015-09-01

This study reports radon concentration in the most representative caves of Mallorca, identifying those in which the recommended action level is exceeded, thus posing health risks. Two show caves (Campanet and Artà) and three non-touristic caves (Font, Drac, Vallgornera) were investigated. Data were collected at several locations within each cave for three different periods, from March 2013 to March 2014. Except for Vallgornera, where only one monitoring period was possible, and Artà in which low values were recorded throughout the year, a clear seasonal variability, with higher values during the warm seasons and lower during winter time is prominent. Radon concentrations differed markedly from one cave to another, as well as within the same cave, ranging from below detection limit up to 3060 Bq·m{sup −3}. The results of this study have significant practical implications, making it possible to provide some recommendation to cave administrators and other agencies involved in granting access to the investigated caves. - Highlights: • A survey of radon was carried out in caves from Mallorca, Spain using CR 39 detectors. • Three different seasons are covered: spring, summer, and winter. • Radon level ranges from below detection limit up to 3060 Bq·m{sup −3}. • Seasonal variation is evident (higher values in summer and lower during winter). • Particular recommendations were made to each cave administration.

The future of the CAVE

KAUST Repository

DeFanti, Thomas; Acevedo-Feliz, Daniel; Ainsworth, Richard; Brown, Maxine; Cutchin, Steven; Dawe, Gregory; Doerr, Kai-Uwe; Johnson, Andrew; Knox, Christopher; Kooima, Robert; Kuester, Falko; Leigh, Jason; Long, Lance; Otto, Peter; Petrovic, Vid; Ponto, Kevin; Prudhomme, Andrew; Rao, Ramesh; Renambot, Luc; Sandin, Daniel; Schulze, Jurgen; Smarr, Larry; Srinivasan, Madhusudhanan; Weber, Philip; Wickham, Gregory

2011-01-01

The CAVE, a walk-in virtual reality environment typically consisting of 4–6 3 m-by-3 m sides of a room made of rear-projected screens, was first conceived and built in 1991. In the nearly two decades since its conception, the supporting technology has improved so that current CAVEs are much brighter, at much higher resolution, and have dramatically improved graphics performance. However, rear-projection-based CAVEs typically must be housed in a 10 m-by-10 m-by-10 m room (allowing space behind the screen walls for the projectors), which limits their deployment to large spaces. The CAVE of the future will be made of tessellated panel displays, eliminating the projection distance, but the implementation of such displays is challenging. Early multi-tile, panel-based, virtual-reality displays have been designed, prototyped, and built for the King Abdullah University of Science and Technology (KAUST) in Saudi Arabia by researchers at the University of California, San Diego, and the University of Illinois at Chicago. New means of image generation and control are considered key contributions to the future viability of the CAVE as a virtual-reality device.

Paleo-watertable definition using cave ferromanganese stromatolites and associated cave-wall notches (Sierra de Arnero, Spain)

Science.gov (United States)

Rossi, Carlos; Villalaín, Juan J.; Lozano, Rafael P.; Hellstrom, John

2016-05-01

The steeply-dipping-dolostone-hosted caves of the Sierra de Arnero (N Spain) contain low-gradient relict canyons with up to ten mapped levels of ferromanganese stromatolites and associated wall notches over a vertical range of 85 m, the highest occurring 460 m above base level. Despite a plausible speleogenetic contribution by pyrite oxidation, and the irregular cave-wall mesomorphologies suggestive of hypogenic speleogenesis, the Arnero relict caves are dominantly epigenic, as indicated by the conduit pattern and the abundant allogenic sediments. Allogenic input declined over time due to a piracy-related decrease in the drainage area of allogenic streams, explaining the large size of the relict Arnero caves relative to the limited present-day outcrop area of the karstified carbonates. Allogenic-sediment input also explains the observed change from watertable canyons to phreatic conduits in the paleo-downstream direction. Stromatolites and notches arguably formed in cave-stream passages at the watertable. The best-defined paleo-watertables show an overall slope of 1.7°, consistent with the present-day relief of the watertable, with higher-slope segments caused by barriers related to sulfide mineralization. The formation of watertable stromatolites favored wall notching by the combined effect of enhanced acidity by Mn-Fe oxidation and shielding of cave floors against erosion. Abrasive bedload further contributed to notch formation by promoting lateral mechanical erosion and protecting passage floors. The irregular wallrock erosional forms of Arnero caves are related partly to paragenesis and partly to the porous nature of the host dolostones, which favored irregular dissolution near passage walls, generating friable halos. Subsequent mechanical erosion contributed to generate spongework patterns. The dolostone porosity also contributes to explain the paradox that virtually all Arnero caves are developed in dolostone despite being less soluble than adjacent

Book Review: Caves and Karst of the Yorkshire Dales

Science.gov (United States)

Westaway, Rob

2015-10-01

The British Cave Research Association (BCRA) is the research division of the British Caving Association (BCA), itself the principal society in Britain for those interested in caving, with activities including provision of training and safety certification for cavers and managing access to caves. Although some UK cave-related research is carried out by academics, this tends to be restricted to archaeological investigations of caves that have served as human habitations, and to be focused more on the occupants than the caves themselves. In contrast, most cave exploration is undertaken as a leisure activity, under the auspices of clubs affiliated to the BCA/BCRA, this being indeed virtually the only field of Earth science where amateur investigators can continue to make significant discoveries. Many cave explorers are also affiliated with academic researchers, such as managers of dating laboratories; the synergy between these two groups is highly productive, having resulted for instance in the discovery and exploration in recent years of the vast Ogof Draenen cave system in South Wales, which probably dates back to the Early Pleistocene (e.g., Farrant et al., 2014).

PIXE analysis of cave sediments, prehispanic paintings and obsidian cutting tools from Baja California Sur caves

International Nuclear Information System (INIS)

Miranda, J.; Oliver, A.; Dacal, A.; Ruvalcaba, J.L.; Cruz, F.; Ortiz, M.E.; Vinas, R.

1993-01-01

Elemental PIXE analysis of cave sediments, minerals, pigments of the prehispanic paintings and obsidian cutting tools from caves in Baja California Sur has been carried out with a 0.7 MeV proton beam. The elements analysed in this sample set (Al to Co) provide an idea of the environment of the caves. The obsidian data analysis suggests that the human communities who made these painting used more than one obsidian source to manufacture cutting tools. (orig.)

Exposure to radon in Australian tourist caves

International Nuclear Information System (INIS)

Solomon, S.B.; Langroo, R.; Lyons, R.G.

1994-01-01

In 1991 the International Commission on Radiological Protection(ICRP) produced guidelines and recommendations dealing with workplace exposure to elevated background radiation, in particular, the risk associated with the inhalation of radon and radon progeny. An intervention level of 1000 Bq m -3 has been proposed. Australia has over 40 tourist caves, under the management of the various State Departments or private groups. The limited data available on radon levels in Australian caves would suggest that some of these caves may be in excess of the proposed intervention level, thus presenting a potential health risk for the cave guides. This paper summarises the current information on radon in Australian caves and describes the proposed methodologies to be used for a Worksafe Australia-funded survey of radon levels in Tourist caves within Australia. This survey is to be carried out jointly by researchers at the Australian Radiation Laboratory, University of Auckland and the University of Sydney, during 1994 and 1995. 7 refs., 3 tabs

Minerogenetic mechanisms occurring in the cave environment: an overview

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Forti Paolo

2011-07-01

Full Text Available Perhaps man’s first motivation to explore caves, beyond using them as shelter, was the search for substances that were not availableelsewhere: most of them were minerals. However, for a long time it was believed that the cave environment was not very interestingfrom the mineralogical point of view. This was due to the fact that most cave deposits are normally composed of a singlecompound: calcium carbonate. Therefore, the systematic study of cave mineralogy is of only recent origin. However, although onlya limited number of natural cavities have been investigated in detail, about 350 cave minerals have already been observed, someof which are new to science. The presence of such unexpected richness is a direct consequence of the variety of rocks traversedby water or other fluids before entering a cave and the sediments therein. Different cave environments allow the development ofvarious minerogenetic mechanisms, the most important of which are double exchange reactions, evaporation, oxidation, hydrationdehydration,sublimation, deposition from aerosols and vapors, and segregation. The cave temperature and pH/Eh strictly controlmost of them, although some are driven by microorganisms. The cave environment, due to its long-term stability, can sometimesallow for the development of huge euhedral crystals, such as those found in the Naica caves (Mexico, but the presence of extremelysmall yet complex aggregates of different minerals is far more common. Future development in the field of cave mineralogy will likelybe focused mainly on hydrothermal and sulfuric-acid caves and on the role played by micro-organisms in controlling some of the mostimportant minerogenetic processes in caves.

Pathogenic and opportunistic microorganisms in caves

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Sanchez-Moral Sergio

2010-01-01

Full Text Available With today’s leisure tourism, the frequency of visits to many caves makes it necessary to know about possible potentially pathogenic microorganisms in caves, determine their reservoirs, and inform the public about the consequences of such visits. Our data reveal that caves could be a potential danger to visitors because of the presence of opportunistic microorganisms, whose existence and possible development in humans is currently unknown.

Diurnal Variation of Radon Concentration in the Postojna Cave

International Nuclear Information System (INIS)

Gregoric, A.; Vaupotic, J.

2011-01-01

Postojna Cave, with 20 km of galleries, is the longest known cave system and also the largest of about 20 show caves in Slovenia and one of the most visited show caves in the world. It is well known that high concentrations of radon are common in karstic caves, although quantities of uranium (238U) in limestone are rather low. The reason for this is low natural ventilation of the underground cavities. Tectonic faults constitute an additional source of radon. Variations of radon concentration in cave air arise from a balance of the emission from cave surfaces and drip waters, decay in cave air, and exchange with the outside atmosphere. Because of its elevated radon concentrations, Postojna Cave has been under permanent radon survey since 1995. The influence of meteorological conditions on the radon levels and their temporal variations depends mostly on the shape of the cave, and the number and directions of cracks, corridors and fissures connecting the cave rooms with the outside atmosphere. The driving force for air movement in horizontal caves, and thus the inflow of fresh air and release of the cave air to the atmosphere, is the temperature difference between the cave air and outdoors, which causes seasonal pattern of radon concentration in the cave with high levels in summer and low in winter. However, on a daily scale different behaviour of radon can be observed at different locations in the cave. In this paper diurnal variation of radon concentration at two locations is presented and discussed. Postojna Cave is a horizontal cave with a stable yearly temperature around 10 degrees of @C. Continuous measurements of radon concentration were carried out from 2005 to 2010 at two locations along the guided tourist trail. Radon concentration was measured with Radim 5 WP monitors (SMM Company, Prague, Czech Republic) with sampling frequency once an hour. The evaluation of five-year radon monitoring at two sites in the Postojna Cave reveals significant diurnal and

Microbiological and environmental issues in show caves.

Science.gov (United States)

Saiz-Jimenez, Cesareo

2012-07-01

Cultural tourism expanded in the last half of the twentieth century, and the interest of visitors has come to include caves containing archaeological remains. Some show caves attracted mass tourism, and economical interests prevailed over conservation, which led to a deterioration of the subterranean environment and the rock art. The presence and the role of microorganisms in caves is a topic that is often ignored in cave management. Knowledge of the colonisation patterns, the dispersion mechanisms, and the effect on human health and, when present, over rock art paintings of these microorganisms is of the utmost importance. In this review the most recent advances in the study of microorganisms in caves are presented, together with the environmental implications of the findings.

Genomic sequencing of Pleistocene cave bears

Energy Technology Data Exchange (ETDEWEB)

Noonan, James P.; Hofreiter, Michael; Smith, Doug; Priest, JamesR.; Rohland, Nadin; Rabeder, Gernot; Krause, Johannes; Detter, J. Chris; Paabo, Svante; Rubin, Edward M.

2005-04-01

Despite the information content of genomic DNA, ancient DNA studies to date have largely been limited to amplification of mitochondrial DNA due to technical hurdles such as contamination and degradation of ancient DNAs. In this study, we describe two metagenomic libraries constructed using unamplified DNA extracted from the bones of two 40,000-year-old extinct cave bears. Analysis of {approx}1 Mb of sequence from each library showed that, despite significant microbial contamination, 5.8 percent and 1.1 percent of clones in the libraries contain cave bear inserts, yielding 26,861 bp of cave bear genome sequence. Alignment of this sequence to the dog genome, the closest sequenced genome to cave bear in terms of evolutionary distance, revealed roughly the expected ratio of cave bear exons, repeats and conserved noncoding sequences. Only 0.04 percent of all clones sequenced were derived from contamination with modern human DNA. Comparison of cave bear with orthologous sequences from several modern bear species revealed the evolutionary relationship of these lineages. Using the metagenomic approach described here, we have recovered substantial quantities of mammalian genomic sequence more than twice as old as any previously reported, establishing the feasibility of ancient DNA genomic sequencing programs.

Identifying elementary iterated systems through algorithmic inference: The Cantor set example

Energy Technology Data Exchange (ETDEWEB)

Apolloni, Bruno [Dipartimento di Scienze dell' Informazione, Universita degli Studi di Milano, Via Comelico 39/41, 20135 Milan (Italy)]. E-mail: apolloni@dsi.unimi.it; Bassis, Simone [Dipartimento di Scienze dell' Informazione, Universita degli Studi di Milano, Via Comelico 39/41, 20135 Milan (Italy)]. E-mail: bassis@dsi.unimi.it

2006-10-15

We come back to the old problem of fractal identification within the new framework of algorithmic Inference. The key points are: (i) to identify sufficient statistics to be put in connection with the unknown values of the fractal parameters, and (ii) to manage the timing of the iterated process through spatial statistics. We fill these tasks successfully with the Cantor sets. We are able to compute confidence intervals for both the scaling parameter {theta} and the iteration number n at which we are observing a set. We both check numerically the coverage of these intervals and delineate a general strategy for affording more complex iterated systems.

Distinction between epigenic and hypogenic maze caves

Science.gov (United States)

Palmer, Arthur N.

2011-11-01

Certain caves formed by dissolution of bedrock have maze patterns composed of closed loops in which many intersecting fractures or pores have enlarged simultaneously. Their origin can be epigenic (by shallow circulation of meteoric groundwater) or hypogenic (by rising groundwater or production of deep-seated solutional aggressiveness). Epigenic mazes form by diffuse infiltration through a permeable insoluble caprock or by floodwater supplied by sinking streams. Most hypogenic caves involve deep sources of aggressiveness. Transverse hypogenic cave origin is a recently proposed concept in which groundwater of mainly meteoric origin rises across strata in the distal portions of large flow systems, to form mazes in soluble rock sandwiched between permeable but insoluble strata. The distinction between maze types is debated and is usually based on examination of diagnostic cave features and relation of caves to their regional setting. In this paper, the principles of mass transfer are applied to clarify the limits of each model, to show how cave origin is related to groundwater discharge, dissolution rate, and time. The results show that diffuse infiltration and floodwater can each form maze caves at geologically feasible rates (typically within 500 ka). Transverse hypogenic mazes in limestone, to enlarge significantly within 1 Ma, require an unusually high permeability of the non-carbonate beds (generally ≥ 10-4 cm/s), large discharge, and calcite saturation no greater than 90%, which is rare in deep diffuse flow in sedimentary rocks. Deep sources of aggressiveness are usually required. The origin of caves by transverse hypogenic flow is much more favorable in evaporite rocks than in carbonate rocks.

Structural and hydrological controls on the development of a river cave in marble (Tapagem Cave - SE Brazil

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William Sallun Filho

2015-01-01

Full Text Available Tapagem Cave (or Devil’s Cave is a river cave developed in the dolomite marble karst of the Serra do André Lopes (State of São Paulo, southeastern Brazil. Although this region is a plateau with significant variation in elevation and a humid subtropical climate, the cave is an anomalous feature in the André Lopes karst because there are few other caves. The marble, which is in a synclinal structure with subjacent phyllites, is a karst aquifer perched above the regional base level (Ribeira River and has little allogenic recharge. The cave developed on a secondary anticline on the northwest flank of the marble synform forming a blind valley, the Tapagem River sink, that is an underground tributary of Ostras River. Development of the cave is due to the entrenchment of the Ostras through-valley and the large allogenic catchment area of the sink. In plan view, the morphology of the cave can be divided into three different sectors. The first sector, known as the Tourist Sector, has extensive collapse rooms, fossil passages and a variety of speleothems of notable dimensions. The second and most extensive sector is the river passage, which is a sinuous gallery controlled by marble banding with NE-SW cleavage and NW-SE fractures. In cross-section, the passages are vadose canyons up to 70 m in height, controlled by the marble banding. Four NW-SE diabase dykes in this passage do not affect its direction in plan view. The third sector is an extensive network of passages and collapse rooms, which are interlaced in plan view and on different levels, forming a maze pattern. Initially, the Tapagem and Ostras Rivers developed on a gentle surface and flowed into the Ribeira River. With the entrenchment of the Ostras through-valley, the Tapagem River partially infiltrated via a paleosink into the upper passage of the “Erectus Room," remaining a half-blind valley. Following a series of collapses and obstructions, the River next infiltrated via the current

Urang Cave Karst Environmental Development, as Tourism Object

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Srijono Srijono

2013-12-01

Full Text Available Karst environment become an alternative tourist destination as well as to boost local revenues. In karst environments in Grobogan District, Central Java Province, formed Urang Cave, with an interesting endokarst phenomenon. This study aims to do zoning district Urang Cave as tourist sites. The research method is using contour maps as a base map of Urang Cave karst environment geomorphological mapping. Geomorphological data processing is using ArcView GIS 3.3 program. Land use map refers to RBI, scale 1:25.000. Geomorphological analysis refers to the Ministry of Energy and Mineral Resources No. 1456.K/20/MEM/2000, and petrography. Each development zone is analyzed its geophysical environmental element, then set scoring and value summation. For comprehensive environmental element analysis, chemical analysis of rocks, and water-soil chemistry. In reference to Minister of Energy Mineral Resource decrees No. 1456/K/20/MEM/2000, Urang Cave zoning defined into 3 (three zone, as follow: the Protected Zone, Cultivation Zone 1, and Cultivation Zone 2. Protected Zone, consists of Urang Cave tunnel/hallway with a unique spheleothem in it. This zone as a cave tracking site tourism, potential to produce karst water as a decent drinking water while maintaining hardness. Cultivation Zone 1 is spreading about 200 m in distance from outer appearance of spring around the cave hallway. In this zone mining of cave sediments may be done in the inactive form caves, without changing the state of the existing major exokarst morphology. Cultivation Zone 2, an outer zone, located farthest from the tunnel/hallway Urang Cave. Utilization of this zone as a limestone mining quarry, although only on a small scale.

Measurements of radon concentrations at caves in Jeju

Energy Technology Data Exchange (ETDEWEB)

Go, S. H.; Kang, D. H.; Jung, B. J. [Cheju National University, Cheju (Korea, Republic of)

2004-07-01

Radon is a radioactive gas emitting {alpha} particles. It is chemically stable due to its inert characteristic. While its daughter products, {sup 218}Po, {sup 214}Bi, {sup 214}Pb and {sup 214}Po, attached with aerosol particles, is known to cause lung cancer. As radon is produced from uranium and thorium, it accumulates in poorly ventilative underground voids such as caves and mine. Radon concentrations at caves in Jeju were measured in this study. The measurements were made by setting three CR-39 detectors for 70 days at 2 {approx} 4 positions in Manjang, Hyupjae and Ssangyong caves. The radon levels of the caves spread 403.1 . 606.7 Bq/m{sup 3}. With these results, it is concluded that the Jeju caves have 6 times higher radon concentrations than ordinary house of 65.3 Bq/m{sup 3} and that they are higher than Seoul subway stations due to poor ventilation. While, the caves in Jeju have lower radon concentrations than limestone caves of Robin Hood. The radon concentration in the middle of Manjang cave is slightly higher than the action level in the work place of 500 Bq/m{sup 3} suggested by the ICRP. The measurement errors are estimated to be less than 5 % from its calibration factor.

Measurements of radon concentrations at caves in Jeju

International Nuclear Information System (INIS)

Go, S. H.; Kang, D. H.; Jung, B. J.

2004-01-01

Radon is a radioactive gas emitting α particles. It is chemically stable due to its inert characteristic. While its daughter products, 218 Po, 214 Bi, 214 Pb and 214 Po, attached with aerosol particles, is known to cause lung cancer. As radon is produced from uranium and thorium, it accumulates in poorly ventilative underground voids such as caves and mine. Radon concentrations at caves in Jeju were measured in this study. The measurements were made by setting three CR-39 detectors for 70 days at 2 ∼ 4 positions in Manjang, Hyupjae and Ssangyong caves. The radon levels of the caves spread 403.1 . 606.7 Bq/m 3 . With these results, it is concluded that the Jeju caves have 6 times higher radon concentrations than ordinary house of 65.3 Bq/m 3 and that they are higher than Seoul subway stations due to poor ventilation. While, the caves in Jeju have lower radon concentrations than limestone caves of Robin Hood. The radon concentration in the middle of Manjang cave is slightly higher than the action level in the work place of 500 Bq/m 3 suggested by the ICRP. The measurement errors are estimated to be less than 5 % from its calibration factor

Hypogene caves of the central Appalachian Shenandoah Valley in Virginia

Science.gov (United States)

Doctor, Daniel H.; Orndorff, Wil

2017-01-01

Several caves in the Shenandoah Valley in Virginia show evidence for early hypogenic conduit development with later-enhanced solution under partly confined phreatic conditions guided by geologic structures. Many (but not all) of these caves have been subsequently invaded by surface waters as a result of erosion and exhumation. Those not so affected are relict phreatic caves, bearing no relation to modern drainage patterns. Field and petrographic evidence shows that carbonate rocks hosting certain relict phreatic caves were dolomitized and/or silicified by early hydrothermal fluid migration in zones that served to locally enhance rock porosity, thus providing preferential pathways for later solution by groundwater flow, and making the surrounding bedrock more resistant to surficial weathering to result in caves that reside within isolated hills on the land surface. Features suggesting that deep phreatic processes dominated the development of these relict caves include (1) cave passage morphologies indicative of ascending fluids, (2) cave plans of irregular pattern, reflecting early maze or anastomosing development, (3) a general lack of cave breakdown and cave streams or cave stream deposits, and (4) calcite wall and pool coatings within isolated caves intersecting the local water table, and within unroofed caves at topographic locations elevated well above the local base level. Episodes of deep karstification were likely separated by long periods of geologic time, encompassing multiple phases of sedimentary fill and excavation within caves, and reflect a complex history of deep fluid migration that set the stage for later shallow speleogenesis that continues today.

A Combined Methodology of Adaptive Neuro-Fuzzy Inference System and Genetic Algorithm for Short-term Energy Forecasting

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KAMPOUROPOULOS, K.

2014-02-01

Full Text Available This document presents an energy forecast methodology using Adaptive Neuro-Fuzzy Inference System (ANFIS and Genetic Algorithms (GA. The GA has been used for the selection of the training inputs of the ANFIS in order to minimize the training result error. The presented algorithm has been installed and it is being operating in an automotive manufacturing plant. It periodically communicates with the plant to obtain new information and update the database in order to improve its training results. Finally the obtained results of the algorithm are used in order to provide a short-term load forecasting for the different modeled consumption processes.

Bioaccumulation of eight heavy metals in cave animals from Dashui ...

African Journals Online (AJOL)

ajl2

karst caves and water systems in the caves are well developed. So, heavy metals can contaminate cave envi- ronment and affect cave animals. Karst topography is widely distributed in Guizhou province, China, accounting for 73.8% of the total land area. So, the examination of heavy metal pollution in cave soil and water ...

Statistical Physics, Optimization, Inference, and Message-Passing Algorithms : Lecture Notes of the Les Houches School of Physics : Special Issue, October 2013

CERN Document Server

Ricci-Tersenghi, Federico; Zdeborova, Lenka; Zecchina, Riccardo; Tramel, Eric W; Cugliandolo, Leticia F

2015-01-01

This book contains a collection of the presentations that were given in October 2013 at the Les Houches Autumn School on statistical physics, optimization, inference, and message-passing algorithms. In the last decade, there has been increasing convergence of interest and methods between theoretical physics and fields as diverse as probability, machine learning, optimization, and inference problems. In particular, much theoretical and applied work in statistical physics and computer science has relied on the use of message-passing algorithms and their connection to the statistical physics of glasses and spin glasses. For example, both the replica and cavity methods have led to recent advances in compressed sensing, sparse estimation, and random constraint satisfaction, to name a few. This book’s detailed pedagogical lectures on statistical inference, computational complexity, the replica and cavity methods, and belief propagation are aimed particularly at PhD students, post-docs, and young researchers desir...

Measurements of radon levels inside Mexican caves

International Nuclear Information System (INIS)

Borau, J.; Gonzalez, A.; Espinosa, G.; Golzarri, J.I.

1993-01-01

Living animal species on earth have been exposed to environmental radon from the very beginning of time. The effects of radiation, combined with other natural parameters such as temperature, humidity, salt contents, etc., have most likely influenced the evaluation of different species. Thus, it is important to know and to evaluate the radon levels, among other radioactive elements present in enclosed environments such as caves, especially since those caves were also the dwellings and refuge of the predecessor of man. In this work we present radon level measurements inside some caves with vestiges of ancient inhabitats and some recently discovered natural caves, using Nuclear Track Detectors. (author)

Contextualizing Cave Maps as Geospatial Information: Case Study of Indonesia

Science.gov (United States)

Reinhart, H.

2017-12-01

Caves are the result of solution processes. Because they are happened from geochemical and tectonic activity, they can be considered as geosphere phenomena. As one of the geosphere phenomena, especially at karst landform, caves have spatial dimensions and aspects. Cave’s utilizations and developments are increasing in many sectors such as hydrology, earth science, and tourism industry. However, spatial aspects of caves are poorly concerned dues to the lack of recognition toward cave maps. Many stakeholders have not known significances and importance of cave maps in determining development of a cave. Less information can be considered as the cause. Therefore, it is strongly necessary to put cave maps into the right context in order to make stakeholders realize the significance of it. Also, cave maps will be officially regarded as tools related to policy, development, and conservation act of caves hence they will have regulation in the usages and applications. This paper aims to make the contextualization of cave maps toward legal act. The act which is used is Act Number 4 Year 2011 About Geospatial Information. The contextualization is done by scrutinizing every articles and clauses related to cave maps and seek the contextual elements from both of them. The results are that cave maps can be regarded as geospatial information and classified as thematic geospatial information. The usages of them can be regulated through the Act Number 4 Year 2011. The regulations comprised by data acquisition, database, authorities, surveyor, and the obligation of providing cave maps in planning cave’s development and the environment surrounding.

Millipedes (Diplopoda of twelve caves in Western Mecsek, Southwest Hungary

Directory of Open Access Journals (Sweden)

Angyal, D.

2013-11-01

Full Text Available Twelve caves of Western Mecsek, Southwest Hungary were examined between September 2010 and April 2013from the millipede (Diplopoda faunistical point of view. Ten species were found in eight caves, which consistedeutroglophile and troglobiont elements as well. The cave with the most diverse fauna was the Törökpince Sinkhole, while thetwo previously also investigated caves, the Abaligeti Cave and the Mánfai-kőlyuk Cave provided less species, which couldbe related to their advanced touristic and industrial utilization.

Caves as observatories for atmospheric thermal tides: an example from Ascunsă Cave, Romania

Directory of Open Access Journals (Sweden)

Virgil Drăgușin

2018-01-01

Full Text Available As part of a microclimate study at Ascunsă Cave, Romania, we used Gemini Tinytag Plus 2 data loggers to record cave air temperature variability. At one of the monitoring points we recognized the presence of semidiurnal cycles on the order of a few thousands of a degree Celsius that could be produced under the influence of the semidiurnal tidal components of the Sun (S2 or the Moon (M2. Using a Gemini Tinytag Plus 2 data logger with an external probe we measured core rock temperature and showed that it does not influence the cave air temperature on such short time scales. We thus rejected the possibility that Earth tides, mostly produced by the lunar tidal influence on the Earth’s crust, would have had a semidiurnal influence on cave air temperature. Moreover, time series analysis revealed a 12.00-hour periodicity in temperature data, specific for the S2, allowing us to assign these variations to the influence of the thermo-tidal action of the Sun. Using the Ideal Gas Law and assuming a constant volume and amount of air, we calculated that a theoretical change in atmospheric pressure of around 40 Pa was needed to produce the temperature changes we observed. This agrees with published values of atmospheric pressure changes induced by the semidiurnal solar component of the thermal tides (S2(t. We thus can assign the observed temperature changes to semidiurnal atmospheric pressure changes (S2(p induced by the thermal excitation of the Sun. Our study signals the possibility that readily available data from cave monitoring studies around the world could be used in the study of atmospheric tides. Moreover, it appears that Ascunsă Cave acts as a natural meteorological filter on a short time scale, removing the direct thermal influences of the Sun (especially night and day differences and preserving only the barometric information from the surface.

Stress analysis of longwall top coal caving

Energy Technology Data Exchange (ETDEWEB)

Alehossein, H.; Poulsen, B.A. [CSIRO Exploration & Mining, Brisbane, Qld. (Australia)

2010-01-15

Longwall top coal caving (LTCC) is a relatively new method of mining thick coal seams that is currently achieving high productivity and efficiency. The technique is similar to traditional longwall mining in that a cutting head slices coal from the lower section of the coal seam onto a conveyor belt installed in front of the hydraulic support near the cutting face. In modern LTCC an additional rear conveyor belt is located behind the support, to which the flow of the caved coal from the upper part of the seam can be controlled by a moveable flipper attached to the canopy of the support. The mining method relies on the fracturing of the top coal by the front abutment pressure to achieve satisfactory caving into the rear conveyor. This paper develops a yield and caveability criterion based on in situ conditions in the top coal in advance of the mining face (yield) and behind the supports (caveability). Yielding and caving effects are combined into one single number called caving number (CN), which is the multiplication result of caving factor (CF) and yield factor (YF). Analytical derivations are based on in situ stress conditions, Mohr-Coulomb and/or Hoek-Brown rock failure criteria and an on-associated elastoplastic strain softening material behaviour. The yield and caveability criteria are in agreement with results from both numerical studies and mine data. The caving number is normalised to mining conditions of a reference Chinese mine (LMX mine) and is used to assess LTCC performance at fourteen other Chinese working longwalls that have had varying success with the LTCC technology. As a predictive model, results of this analytical/numerical study are useful to assess the potential success of caving in new LTCC operations and in different mining conditions.

Hunting, Swimming, and Worshiping: Human Cultural Practices Illuminate the Blood Meal Sources of Cave Dwelling Chagas Vectors (Triatoma dimidiata) in Guatemala and Belize

Science.gov (United States)

Stevens, Lori; Monroy, M. Carlota; Rodas, Antonieta Guadalupe; Dorn, Patricia L.

2014-01-01

Background Triatoma dimidiata, currently the major Central American vector of Trypanosoma cruzi, the parasite that causes Chagas disease, inhabits caves throughout the region. This research investigates the possibility that cave dwelling T. dimidiata might transmit the parasite to humans and links the blood meal sources of cave vectors to cultural practices that differ among locations. Methodology/Principal Findings We determined the blood meal sources of twenty-four T. dimidiata collected from two locations in Guatemala and one in Belize where human interactions with the caves differ. Blood meal sources were determined by cloning and sequencing PCR products amplified from DNA extracted from the vector abdomen using primers specific for the vertebrate 12S mitochondrial gene. The blood meal sources were inferred by ≥99% identity with published sequences. We found 70% of cave-collected T. dimidiata positive for human DNA. The vectors had fed on 10 additional vertebrates with a variety of relationships to humans, including companion animal (dog), food animals (pig, sheep/goat), wild animals (duck, two bat, two opossum species) and commensal animals (mouse, rat). Vectors from all locations fed on humans and commensal animals. The blood meal sources differ among locations, as well as the likelihood of feeding on dog and food animals. Vectors from one location were tested for T. cruzi infection, and 30% (3/10) tested positive, including two positive for human blood meals. Conclusions/Significance Cave dwelling Chagas disease vectors feed on humans and commensal animals as well as dog, food animals and wild animals. Blood meal sources were related to human uses of the caves. We caution that just as T. dimidiata in caves may pose an epidemiological risk, there may be other situations where risk is thought to be minimal, but is not. PMID:25211347

Hunting, swimming, and worshiping: human cultural practices illuminate the blood meal sources of cave dwelling Chagas vectors (Triatoma dimidiata in Guatemala and Belize.

Directory of Open Access Journals (Sweden)

Lori Stevens

2014-09-01

Full Text Available Triatoma dimidiata, currently the major Central American vector of Trypanosoma cruzi, the parasite that causes Chagas disease, inhabits caves throughout the region. This research investigates the possibility that cave dwelling T. dimidiata might transmit the parasite to humans and links the blood meal sources of cave vectors to cultural practices that differ among locations.We determined the blood meal sources of twenty-four T. dimidiata collected from two locations in Guatemala and one in Belize where human interactions with the caves differ. Blood meal sources were determined by cloning and sequencing PCR products amplified from DNA extracted from the vector abdomen using primers specific for the vertebrate 12S mitochondrial gene. The blood meal sources were inferred by ≥ 99% identity with published sequences. We found 70% of cave-collected T. dimidiata positive for human DNA. The vectors had fed on 10 additional vertebrates with a variety of relationships to humans, including companion animal (dog, food animals (pig, sheep/goat, wild animals (duck, two bat, two opossum species and commensal animals (mouse, rat. Vectors from all locations fed on humans and commensal animals. The blood meal sources differ among locations, as well as the likelihood of feeding on dog and food animals. Vectors from one location were tested for T. cruzi infection, and 30% (3/10 tested positive, including two positive for human blood meals.Cave dwelling Chagas disease vectors feed on humans and commensal animals as well as dog, food animals and wild animals. Blood meal sources were related to human uses of the caves. We caution that just as T. dimidiata in caves may pose an epidemiological risk, there may be other situations where risk is thought to be minimal, but is not.

Radon Exposures in the Caves of Tenerife (Canary Islands)

International Nuclear Information System (INIS)

Pinza-Molina, C.; Alcaide, J.M.; Rodriques-Bethencourt, R.; Hernandez-Armas, J.

1999-01-01

There are more than a hundred volcanic caves and pits of various lengths on the island of Tenerife (Canary Islands, Spain). The results are presented of atmospheric radon measurements performed in three of these caves and in three pits. One of the caves selected, El Viento Cave, is nearly 20 km in length and is the longest volcanic tube in the Canarian archipelago and the second longest in the world. The measurements were performed over two distinct periods during the year using passive polycarbonate detectors. The mean radon concentrations range between 0.3 and 8 kBq.m -3 , the maximum value corresponds to a site located at 1850 m from the mouth of El Viento Cave. Possible touristic development of these caves has been taken into account in estimating the effective doses for visitors and guides (considered separately). The values obtained range from 0.3 to 100 μSv per visit for visitors. The largest effective dose would correspond to that for guides at 41 mSv.y -1 in the Viento Cave. This result would make protection against radiological hazards obligatory if the cave were to be developed as a site for tourism. (author)

Eleven bones: More fossil remains of Cave Lions and Cave Hyaenas from the North Sea area

NARCIS (Netherlands)

Bosscha Erdbrink, D.P.

1983-01-01

Six fossil Cave Lion bones and five fossil Cave Hyaena bones are described. One lion bone and one hyaena bone were dredged from the Westerschelde ( = Western Scheldt, southwestern part of the Netherlands). The other specimens were recovered from the bottom of the North Sea, in the area West and

Radon in an underground cave system in Victoria

International Nuclear Information System (INIS)

Hedt, J.C.; Boal, T.J.

1998-01-01

Radon levels in a cave system in Victoria have been measured. The variation of radon and radon progeny levels with time, position throughout the cave and season have been determined. The radiation exposure of tour guides were estimated. The data is being used to develop a radiation management plan for the tour guides. Radon concentration within a cave system was proven to be dependent to a large extent upon the rate of air exchange with outside. Cave ventilation is the single most important factor in determining if there is diurnal variation in the radon concentration

14C AMS dating Yongcheon cave

International Nuclear Information System (INIS)

Lee, J.H.; Choe, K.; Kim, J.C.; Choi, S.H.; Kang, J.; Song, S.; Song, Y.M.; Jang, J.G.

2013-01-01

The biggest island in South Korea is Jeju Island, which lies 80 km south of the mainland and has one shield volcano, Mt. Halla. The volcanic island and its lava tubes were added to the world heritage list by UNESCO in 2007. Among the many lava tubes on the island, a unique cave had been accidentally found in 2005 while some workers were replacing a telephone pole. Until the discovery, it had been completely isolated from the outside by naturally-built sand blocks. Yongcheon cave is a lime-decorated lava tube showing both the properties of a volcanic lava tube and a limestone cave. This cave, about 3 km in length, is acknowledged to be the best of this type in the world and includes a large clean-water lake, lava falls, and richly developed speleothems inside it. Even though there is archaeological evidence from well preserved pottery that ancient people entered this place, the preservation of artifacts was ensured by a geological change that made later entrance difficult. We have collected charcoal samples scattered around the cave and dated them using AMS. Ages were in the range of ca. 1570-1260 BP (A.D. 340–880) and this corresponds to the Ancient Three Kingdoms and the Unified Silla era in Korean history. The 14 C AMS measurement results presented in this paper on wood charcoal provide precise dates which will be very useful not only to clarify the nature of human activities in this cave but also to provide reference dates when comparing other dating methods.

Eogenetic caves in conglomerate: an example from Udin Boršt, Slovenia

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Lipar Matej

2011-01-01

Full Text Available Udin Boršt is a karstified terrace of carbonate rock, which is of fluvioglacial origin, and is situated in the north-western part of Slovenia. There are 15 registered caves, which have been interpreted as caves in conglomerate, while karst of Udin Boršt itself was interpreted as conglomerate karst, shallow karst or isolated karst. In this article, caves in Udin Boršt have been interpreted as eogenetic caves. Based on porosity and bedding material, different types of caves and cave passages have developed. Four general types of eogenetic caves found in Udin Boršt are; linear stream caves, shelter caves, breakdown caves and vadose shafts.

Elements of Causal Inference: Foundations and Learning Algorithms

DEFF Research Database (Denmark)

Peters, Jonas Martin; Janzing, Dominik; Schölkopf, Bernhard

A concise and self-contained introduction to causal inference, increasingly important in data science and machine learning......A concise and self-contained introduction to causal inference, increasingly important in data science and machine learning...

Millipedes (Diplopoda) from caves of Portugal

DEFF Research Database (Denmark)

P. S. Reboleira, Ana Sofia; Enghoff, Henrik

2014-01-01

in caves of the mainland and the island of Madeira has provided new data about the distribution and diversity of millipedes. A review of millipedes from caves of Portugal is presented, listing fourteen species belonging to eight families, among which six species are considered troglobionts...

Feasibility Study of Padarangin Cave Slogohimo Wonogiri for Eco-Tourism

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Kuswaji Dwi Priyono

2004-01-01

Full Text Available Area of Karst of mount Sewu in countryside of Padarangin own immeasurable of potency to be developed by besides activity of mining namely the tourism activity. Cave of nature found enable to can be developed as tourism, but date not yet been known how big potency of relevant tourism with the cave.  In line with the problems, this research aim to provide basic data of potency of cave and assess elegibility of cave. Padarangin for ecotourism in Wonogiri Regeny. Method used by survey of field and interview resident. Result of research indicate that cave of Padarangin have mount of cave at height 848 m msl which relative narrow, chamber horizontal as long as 63,8 m and vertical in 32,5 m. Needed by a special equipment to enter cave with capasities 10 – 15 people once the visit/incoming, owning value of sakral trusted by local society. The cave competent to be developed as tourism object of special enthusasm with visit limited.

The fungal colonisation of rock-art caves: experimental evidence.

Science.gov (United States)

Jurado, Valme; Fernandez-Cortes, Angel; Cuezva, Soledad; Laiz, Leonila; Cañaveras, Juan Carlos; Sanchez-Moral, Sergio; Saiz-Jimenez, Cesareo

2009-09-01

The conservation of rock-art paintings in European caves is a matter of increasing interest. This derives from the bacterial colonisation of Altamira Cave, Spain and the recent fungal outbreak of Lascaux Cave, France-both included in the UNESCO World Heritage List. Here, we show direct evidence of a fungal colonisation of rock tablets in a testing system exposed in Altamira Cave. After 2 months, the tablets, previously sterilised, were heavily colonised by fungi and bacteria. Most fungi isolated were labelled as entomopathogens, while the bacteria were those regularly identified in the cave. Rock colonisation was probably promoted by the dissolved organic carbon supplied with the dripping and condensation waters and favoured by the displacement of aerosols towards the interior of the cave, which contributed to the dissemination of microorganisms. The role of arthropods in the dispersal of spores may also help in understanding fungal colonisation. This study evidences the fragility of rock-art caves and demonstrates that microorganisms can easily colonise bare rocks and materials introduced into the cavity.

Dating the Lascaux cave gour formation

International Nuclear Information System (INIS)

Genty, D.; Touma, M.; Konik, S.; Konik, S.; Valladas, H.; Hellstrom, J.; Moreau, C.; Dumoulin, J.P.; Nouet, J.; Dauphin, Y.; Weil, R.

2011-01-01

Lascaux Cave is renowned for its outstanding prehistoric paintings, strikingly well-preserved over about 18,000 yr. While stalagmites and stalactites are almost absent in the cave, there is an extensive calcite flow-stone that covered a large part of the cave until its opening for tourists during the 1950's. The deposit comprises a succession of calcite rims, or 'gours', which allowed seepage water to pond in large areas in the cave. Their possible role in preservation of the cave paintings has often been evoked, but until now this deposit has not been studied in detail. Here, we present 24 new radiocarbon accelerator mass spectrometry (AMS) and 6 uranium-thorium (U-Th) analyses from the calcite of the gours, 4 AMS 14 C dates from charcoals trapped in the calcite, and 4 AMS 14 C analyses on organic matter extracted from the calcite. Combining the calibrated 14 C ages obtained on charcoals and organic matter and U-Th ages from 14 C analyses made on the carbonate, has allowed the calculation of the dead carbon proportion (dcp) of the carbonate deposits. The latter, used with the initial atmospheric 14 C activities reconstructed with the new IntCal09 calibration data, allows high-resolution age estimation of the gour calcite samples and their growth rates. The carbonate deposit grew between 9530 and 6635 yr cal BP (for dcp = 10.7 ± 1.8%; 2 s) or between 8518 and 5489 yr cal BP (for dcp = 20.5 ± 1.9%; 2 s). This coincides with humid periods that can be related to the Atlantic period in Europe and to Sapropel 1 in the eastern Mediterranean Sea. However, geomorphological changes at the cave entrance might also have played a role in the gour development. In the 1940's, when humans entered the cave for the first time since its prehistoric occupation, the calcite gours had already been inactive for several thousand years. (authors)

Preservation of rodent bones from El Harhoura 2 cave (Morocco, Neolithic - Middle Palaeolithic): Microstructure, mineralogy, crystallinity and composition

Science.gov (United States)

Farre, Bastien; Massard, Pierre; Nouet, Julius; Dauphin, Yannicke

2014-04-01

Thin sections, scanning electron microscopy (SEM), diffraction X (DRX) and infrared spectrometry (FTIR) have been used to study the structure, mineralogy, crystallinity and bulk composition of fossil rodent long bones extracted from a succession of sedimentary layers in a cave from Morocco (Neolithic - Middle Palaeolithic, El Harhoura 2). The microstructure of fossil bones is well-preserved at this scale of observation, and encrusted deposits are rare. All bones are preserved in apatite, but the crystallinity is modified, as well as the crystallite shape, the organic content and the organic-mineral ratio. No fluor enrichment has been observed. Alone or together, the studied parameters do not show a regular trend from the upper to the lower layers of the cave. The preservation of the fossil bones does not confirm the sequence of arid and humid periods inferred from taphonomic analyses.

Numerical simulation of formation and preservation of Ningwu ice cave, Shanxi, China

Science.gov (United States)

Yang, S.; Shi, Y.

2015-10-01

Ice caves exist in locations where annual average air temperature is higher than 0 °C. An example is Ningwu ice cave, Shanxi Province, the largest ice cave in China. In order to quantitatively investigate the mechanism of formation and preservation of the ice cave, we use the finite-element method to simulate the heat transfer process at this ice cave. There are two major control factors. First, there is the seasonal asymmetric heat transfer. Heat is transferred into the ice cave from outside very inefficiently by conduction in spring, summer and fall. In winter, thermal convection occurs that transfers heat very efficiently out of the ice cave, thus cooling it down. Secondly, ice-water phase change provides a heat barrier for heat transfer into the cave in summer. The calculation also helps to evaluate effects of global warming, tourists, colored lights, climatic conditions, etc. for sustainable development of the ice cave as a tourism resource. In some other ice caves in China, managers have installed airtight doors at these ice caves' entrances with the intention of "protecting" these caves, but this in fact prevents cooling in winter and these cave ices will entirely melt within tens of years.

A cave response to environmental changes in the Late Pleistocene: a study of Budimirica Cave sediments, Macedonia

Czech Academy of Sciences Publication Activity Database

Temovski, M.; Pruner, Petr; Hercman, H.; Bosák, Pavel

2016-01-01

Roč. 69, č. 3 (2016), s. 307-316 ISSN 1330-030X Institutional support: RVO:67985831 Keywords : cave sediments * palaeoenvironmental changes * Late Pleistocene * Budimirica Cave * Macedonia Subject RIV: DB - Geology ; Mineralogy Impact factor: 0.595, year: 2016 http://www. geologia -croatica.hr/ojs/index.php/GC

Ensemble stacking mitigates biases in inference of synaptic connectivity

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Brendan Chambers

2018-03-01

Full Text Available A promising alternative to directly measuring the anatomical connections in a neuronal population is inferring the connections from the activity. We employ simulated spiking neuronal networks to compare and contrast commonly used inference methods that identify likely excitatory synaptic connections using statistical regularities in spike timing. We find that simple adjustments to standard algorithms improve inference accuracy: A signing procedure improves the power of unsigned mutual-information-based approaches and a correction that accounts for differences in mean and variance of background timing relationships, such as those expected to be induced by heterogeneous firing rates, increases the sensitivity of frequency-based methods. We also find that different inference methods reveal distinct subsets of the synaptic network and each method exhibits different biases in the accurate detection of reciprocity and local clustering. To correct for errors and biases specific to single inference algorithms, we combine methods into an ensemble. Ensemble predictions, generated as a linear combination of multiple inference algorithms, are more sensitive than the best individual measures alone, and are more faithful to ground-truth statistics of connectivity, mitigating biases specific to single inference methods. These weightings generalize across simulated datasets, emphasizing the potential for the broad utility of ensemble-based approaches. Mapping the routing of spikes through local circuitry is crucial for understanding neocortical computation. Under appropriate experimental conditions, these maps can be used to infer likely patterns of synaptic recruitment, linking activity to underlying anatomical connections. Such inferences help to reveal the synaptic implementation of population dynamics and computation. We compare a number of standard functional measures to infer underlying connectivity. We find that regularization impacts measures

Radon in the Creswell Crags Permian limestone caves

International Nuclear Information System (INIS)

Gillmore, G.K.; Phillips, P.S.; Denman, A.R.; Gilbertson, D.D.

2002-01-01

An investigation of radon levels in the caves of Creswell Crags, Derbyshire, an important Site of Special Scientific Interest (SSSI) shows that the Lower Magnesian Limestone (Permian) caves have moderate to raised radon gas levels (27-7800 Bq m -3 ) which generally increase with increasing distance into the caves from the entrance regions. This feature is partly explained in terms of cave ventilation and topography. While these levels are generally below the Action Level in the workplace (400 Bq m -3 in the UK), they are above the Action Level for domestic properties (200 Bq m -3 ). Creswell Crags has approximately 40,000 visitors per year and therefore a quantification of effective dose is important for both visitors and guides to the Robin Hood show cave. Due to short exposure times the dose received by visitors is low (0.0016 mSv/visit) and regulations concerning exposure are not contravened. Similarly, the dose received by guides is fairly low (0.4 mSv/annum) due in part to current working practice. However, the risk to researchers entering the more inaccessible areas of the cave system is higher (0.06 mSv/visit). This survey also investigated the effect of seasonal variations on recorded radon concentration. From this work summer to winter ratios of between 1.1 and 9.51 were determined for different locations within the largest cave system

Calculating flux to predict future cave radon concentrations

Czech Academy of Sciences Publication Activity Database

Rowberry, Matthew David; Martí, Xavier; Frontera, C.; Van De Wiel, M.J.; Briestenský, Miloš

2016-01-01

Roč. 157, JUN (2016), 16-26 ISSN 0265-931X R&D Projects: GA MŠk LM2010008 Institutional support: RVO:67985891 ; RVO:68378271 Keywords : cave radon concentration * cave radon flux * cave ventilation * radioactive decay * fault slip * numerical modelling Subject RIV: DC - Siesmology, Volcanology, Earth Structure; BG - Nuclear, Atomic and Molecular Physics, Colliders (FZU-D) Impact factor: 2.310, year: 2016

Parametric inference for biological sequence analysis.

Science.gov (United States)

Pachter, Lior; Sturmfels, Bernd

2004-11-16

One of the major successes in computational biology has been the unification, by using the graphical model formalism, of a multitude of algorithms for annotating and comparing biological sequences. Graphical models that have been applied to these problems include hidden Markov models for annotation, tree models for phylogenetics, and pair hidden Markov models for alignment. A single algorithm, the sum-product algorithm, solves many of the inference problems that are associated with different statistical models. This article introduces the polytope propagation algorithm for computing the Newton polytope of an observation from a graphical model. This algorithm is a geometric version of the sum-product algorithm and is used to analyze the parametric behavior of maximum a posteriori inference calculations for graphical models.

Cave exploitation by an usual epigean species: a review on the current knowledge on fire salamander breeding in cave

Directory of Open Access Journals (Sweden)

Raoul Manenti

2017-11-01

Full Text Available The fire salamander (Salamandra salamandra is a relatively common epigean amphibian, widely distributed throughout Europe, which usually gives birth to aquatic larvae. Even if epigean streams represent the most common places in which the species breeds, in some countries caves with underground waters are also used. To improve our understanding of the habitat features allowing successful breeding of salamanders in underground sites, we combined an exhaustive review of the available literature, especially the grey one, with direct observations performed from 2008 to 2017 in several natural and artificial caves of Lombardy, Liguria and Tuscany (Italy, Ariège and Provence (France. We provide a synthesis of published and unpublished caves in which the fire salamander breeding has been observed, along with a synthesis of the investigated ecological, behavioural and morphological traits. The use of underground sites is reported in several published papers and appears to be a common phenomenon not limited to single karst areas. The absence of predators, the relative stability of the aquatic habitats and the possibility to exploit new ecological resources are environmental factors that favour the breeding of the fire salamander. Our synthesis suggests that breeding of fire salamanders in caves is not a random event, but a widespread phenomenon that may be linked to specific biogeographical factors. Further insights may be obtained by performing genetic analyses on both cave and epigean populations, and considering larger landscape scales for ecological studies as well. Gene flow between salamanders that breed in caves and in streams probably occurs, but on the other hand, assortative mating might limit it, thus allowing the conservation of local adaptations driving successful cave colonisation.

Sources of sulphate minerals in limestone cave-a possible evidence of anthropogenic activity: a case study in Črna Jama Cave (Slovenia).

Science.gov (United States)

Jarc, Simona; Miler, Miloš; Šebela, Stanka; Zupančič, Nina

2017-12-01

In the caves, the formation of cave minerals is a consequence of a variety of chemical reactions, some of them also due to human activity. There are many caves in Slovenia, but sulphate minerals are not very often reported and analysed. In this study, the presence of sulphate minerals is detected by SEM/EDS analysis of speleothems from Črna Jama, a cave near Kočevje (southern Slovenia). The cave is characterised by its dark, almost black colour on cave walls, floor and speleothems. Anthropogenic influence in the cave is still visible, including the remains of a fireplace, some inscriptions on the walls and wooden containers. The analyses of some of the black-coated speleothems reveal the presence of calcium sulphate, confirmed by XRD as gypsum. Gypsum crystals are around 50 μm in size, and they occur in thin crusts. Additionally, some rare authigenic baryte crystals a few micrometres in size are detected. The sulphates δ 34 S value in gypsum found on dark coloured speleothems is + 10.4‰ Vienna Canyon Diablo Troilite (VCDT), while the sulphate δ 34 S of the bedrock is + 8.6‰ VCDT. The more likely source of sulphate ions is thus biomass burning rather than bedrock. Also, bedrock and biomass ash are a very probable source of calcium and barium. The highly probable pyrogenous origin of sulphates draws attention to human impact on cave mineralogy.

Cryogenic Minerals in Caves of the Vizhay River (Northern Urals

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E. P. Bazarova

2018-03-01

Full Text Available New information on the cryogenic mineral formations at the two Vizhay River caves (Northern Urals is given.   Calcite with the insignificant gypsum admixture predominates in the cryogenic material composition from both caves. In addition, the metastable phases of calcite, such as monohydrocalcite and ikaite were found. In the Saksofon Cave, calcite forms both spherulites and complanate grains. In Lednikovaya Cave, the major part of cryomaterial is presented by spherulites, which may suggests the significant supersaturation of solution. In Lednikovaya Сave, the distinct concentric structure with the growth zones denotes the cryogenic material formation in a thin water film under the partial thawing of upper part of long-term ice mound in summer. In Saksofon Cave the growth zones in crystals are poorly developed that probably caused by the seasonal glaciation in the cave and cryogenic minerals are younger than those in the Lednikovaya Cave.

A new learning algorithm for a fully connected neuro-fuzzy inference system.

Science.gov (United States)

Chen, C L Philip; Wang, Jing; Wang, Chi-Hsu; Chen, Long

2014-10-01

A traditional neuro-fuzzy system is transformed into an equivalent fully connected three layer neural network (NN), namely, the fully connected neuro-fuzzy inference systems (F-CONFIS). The F-CONFIS differs from traditional NNs by its dependent and repeated weights between input and hidden layers and can be considered as the variation of a kind of multilayer NN. Therefore, an efficient learning algorithm for the F-CONFIS to cope these repeated weights is derived. Furthermore, a dynamic learning rate is proposed for neuro-fuzzy systems via F-CONFIS where both premise (hidden) and consequent portions are considered. Several simulation results indicate that the proposed approach achieves much better accuracy and fast convergence.

A geochronological approach for cave evolution in the Cantabrian Coast (Pindal Cave, NW Spain)

Science.gov (United States)

Jimenez-Sanchez, M.; Bischoff, J.L.; Stoll, H.; Aranburu, A.

2006-01-01

Some of the oldest speleothems in the North Cantabrian Coast (Spain) are reported for the first time in this work. Pindal Cave is developed at 24 m above sea level, in a karstic massif reaching its highest surface in a marine terrace (rasa) located at 50-64 m above the present sea level. Several phases of evolution were previously recognized into the cave, including block collapse of the roof, episodic flooding and detrital sedimentation, and chemical precipitation of at least four speleothem generations over both alluvial and collapse deposits. Three of these speleothem generations have been dated by U/Th. The first generation yielded ages from 124,2 ?? 1, 5 ka BP to 73,1 ?? 0,9 ka BP, giving a minimum age for the main detritic sediments in the cave. The second one is not dated. The third generation gives an age of 3,71 ?? 0,4 ka BP (mathematically corrected to 2.7 ?? 0.5 ka BP), while for the youngest generation, with actively growing stalagmites in the cave, basal ages of 200 years BP are estimated by counting annual laminae. The data suggest a tentative maximum elevation rate close to 0, 2 mm/yr for the Cantabrian Margin in this area, although further chronological studies will be needed to check this hypothesis. ?? 2006 Gebru??der Borntraeger.

3N Cave: Longest salt cave in the world

Czech Academy of Sciences Publication Activity Database

Bruthans, J.; Filippi, Michal; Zare, M.; Asadi, N.; Vilhelm, Z.

2006-01-01

Roč. 64, č. 9 (2006), s. 10-18 ISSN 0027-7010 R&D Projects: GA AV ČR(CZ) KJB301110501 Institutional research plan: CEZ:AV0Z30130516 Keywords : salt cave * salt karst * Iran * expedition Namak Subject RIV: DB - Geology ; Mineralogy

Magnetic Susceptibility and Heavy Metals in Guano from South Sulawesi Caves

Science.gov (United States)

Rifai, H.; Putra, R.; Fadila, M. R.; Erni, E.; Wurster, C. M.

2018-04-01

Measurement of some magnetic properties have been performed on vertical profile from South Sulawesi caves (Mampu and Bubau) by using low cost, rapid, sensitive and non destructive magnetic method. The aim is to attempt to use magnetic characters as a fingerprint for anthropogenic pollution in the caves. Guano samples were collected every 5 cm at a certain section of Mampu and Bubau cave, South Sulawesi, starting from surface through 300 cm in depth of mampu Cave and 30 cm of Bubau Cave. The magnetic parameters such as magnetic susceptibility and percentage frequency dependence susceptibility were measured using the Bartington MS2-MS2B instruments and supported by X-Ray Fluoroscence (XRF) to know their element composition. The results show that the samples had variations in magnetic susceptibility from 3.5 to 242.6 x 10‑8 m3/kg for Mampu Cave and from 8.6 to 106.5 x 10‑8 m3/kg for Bubau Cave and also magnetic domain. Then, the XRF results show that the caves contain several heavy metals. Magnetic and heavy metal analyses showing that the magnetic minerals in caves are lithogenic (Fe-bearing minerals) in origin and anthropogenic (Zn content) in the caves.

Differences between caves with and without bats in a Brazilian karst habitat

Directory of Open Access Journals (Sweden)

Camila G. Torquetti

2017-10-01

Full Text Available ABSTRACT. Since bats shelter in roosts during their period of diurnal inactivity, the quality and availability of roosts are important aspects of their ecology. Karst areas have great potential for the availability of day roosts, since they form caves, which serve as bat shelters. Here we characterize the caves used by bats in a preserved karst area of Southeastern Brazil. Using logistic regression analysis we identified the cave characteristics that influence bat occupation. Sixty-six caves were characterized based on measurements of internal height and width, height and width of the entrance(s of the cave, number of entrances, maximum horizontal development of cave, and internal temperature and humidity. In nineteen months we found 14 species in 32 caves. Most species were eventually recorded in multiple caves, with the exception of D. rotundus, G. soricina and A. planirostris, which were always found in the same caves. Desmodus rotundus showed maternity roost fidelity. We found no differences in microclimate between the caves that are occupied and those that are not. In other words, the microclimate of the caves studied herein can be characterized as stable over the years. The only predictor affecting the presence of bats in the study area was the cave’s maximum horizontal development: the caves that are occupied have greater horizontal development. Based on our results, we conclude that bats occupy many of the caves and that some species are more frequent in certain caves than in others, including some roosts that are used as maternity roosts. These findings indicate that these caves are important resources for the bats in the karst environment studied, and should be preserved.

Ancient lineage, young troglobites: recent colonization of caves by Nesticella spiders.

Science.gov (United States)

Zhang, Yuanyuan; Li, Shuqiang

2013-09-04

The evolution and origin of cave organisms is a recurring issue in evolutionary studies, but analyses are often hindered by the inaccessibility of caves, morphological convergence, and complex colonization processes. Here we investigated the evolutionary history of Nesticella cave spiders, which are mainly distributed in the Yunnan-Guizhou Plateau, China. With comprehensive sampling and phylogenetic and coalescent-based analyses, we investigated the tempo and mode of diversification and the origins of these troglobites. We also aimed to determine which factors have influenced the diversification of this little-known group. Coalescent-based species delimitation validated the 18 species recognized by morphological inspection and also suggested the existence of cryptic lineages. Divergence time estimates suggested that Nesticella cave spiders in the Yunnan-Guizhou Plateau constituted a monophyletic troglobite clade that originated in the middle Miocene (11.1-18.6 Ma). Although the Yunnan-Guizhou Plateau clade was composed exclusively of troglobite species, suggesting an ancient common subterranean ancestor, we favor multiple, independent cave colonizations during the Pleistocene over a single ancient cave colonization event to explain the origin of these cave faunas. The diversification of plateau Nesticella has been greatly influenced by the sequential uplift of the plateau and likely reflects multiple cave colonizations over time by epigean ancestors during Pleistocene glacial advances. We concluded that plateau cave Nesticella represent an ancient group of spiders, but with young troglobite lineages that invaded caves only recently. The absence of extant epigean relatives and nearly complete isolation among caves supported their relict status. Our work highlights the importance of comprehensive sampling for studies of subterranean diversity and the evolution of cave organisms. The existence of potentially cryptic species and the relict status of Nesticella

Energy and speleogenesis: Key determinants of terrestrial species richness in caves.

Science.gov (United States)

Jiménez-Valverde, Alberto; Sendra, Alberto; Garay, Policarp; Reboleira, Ana Sofia P S

2017-12-01

The aim of this study was to unravel the relative role played by speleogenesis (i.e., the process in which a cave is formed), landscape-scale variables, and geophysical factors in the determination of species richness in caves. Biological inventories from 21 caves located in the southeastern Iberian Peninsula along with partial least square (PLS) regression analysis were used to assess the relative importance of the different explanatory variables. The caves were grouped according to the similarity in their species composition; the effect that spatial distance could have on similarity was also studied using correlation between matrices. The energy and speleogenesis of caves accounted for 44.3% of the variation in species richness. The trophic level of each cave was the most significant factor in PLS regression analysis, and epigenic caves (i.e., those formed by the action of percolating water) had significantly more species than hypogenic ones (i.e., those formed by the action of upward flows in confined aquifers). Dissimilarity among the caves was very high (multiple-site β sim  = 0.92). Two main groups of caves were revealed through the cluster analysis, one formed by the western caves and the other by the eastern ones. The significant-but low-correlation found between faunistic dissimilarity and geographical distance ( r  =   .16) disappeared once the caves were split into the two groups. The extreme beta-diversity suggests a very low connection among the caves and/or a very low dispersal capacity of the species. In the region under study, two main factors are intimately related to the richness of terrestrial subterranean species in caves: the amount of organic material (trophic level) and the formation process (genesis). This is the first time that the history of a cave genesis has been quantitatively considered to assess its importance in explaining richness patterns in comparison with other factors more widely recognized.

Cave-dwelling pholcid spiders (Araneae, Pholcidae: a review

Directory of Open Access Journals (Sweden)

Bernhard A. Huber

2018-06-01

Full Text Available Pholcidae are ubiquitous spiders in tropical and subtropical caves around the globe, yet very little is known about cave-dwelling pholcids beyond what is provided in taxonomic descriptions and faunistic papers. This paper provides a review based on a literature survey and unpublished information, while pointing out potential biases and promising future projects. A total of 473 native (i.e. non-introduced species of Pholcidae have been collected in about 1000 caves. The large majority of cave-dwelling pholcids are not troglomorphic; a list of 86 troglomorphic species is provided, including 21 eyeless species and 21 species with strongly reduced eyes. Most troglomorphic pholcids are representatives of only two genera: Anopsicus Chamberlin & Ivie, 1938 and Metagonia Simon, 1893. Mexico is by far the richest country in terms of troglomorphic pholcids, followed by several islands and mainland SE Asia. The apparent dominance of Mexico may partly be due to collectors’ and taxonomists’ biases. Most caves harbor only one pholcid species, but 91 caves harbor two and more species (up to five species. Most troglomorphic pholcids belong to two subfamilies (Modisiminae, Pholcinae, very few belong to Smeringopinae and Arteminae, none to Ninetinae. This is in agreement with the recent finding that within Pholcidae, microhabitat changes in general are concentrated in Modisiminae and Pholcinae.

{sup 14}C AMS dating Yongcheon cave

Energy Technology Data Exchange (ETDEWEB)

Lee, J.H., E-mail: jefflee@snu.ac.kr [AMS Lab., NCIRF, Seoul National University, Seoul 151-742 (Korea, Republic of); Choe, K. [AMS Lab., NCIRF, Seoul National University, Seoul 151-742 (Korea, Republic of); Kim, J.C. [Dept. of Physics and Astronomy, Seoul National University, Seoul 151-742 (Korea, Republic of); Choi, S.H.; Kang, J.; Song, S.; Song, Y.M. [AMS Lab., NCIRF, Seoul National University, Seoul 151-742 (Korea, Republic of); Jang, J.G. [Jeju National Museum, Jeju 690-782 (Korea, Republic of)

2013-01-15

The biggest island in South Korea is Jeju Island, which lies 80 km south of the mainland and has one shield volcano, Mt. Halla. The volcanic island and its lava tubes were added to the world heritage list by UNESCO in 2007. Among the many lava tubes on the island, a unique cave had been accidentally found in 2005 while some workers were replacing a telephone pole. Until the discovery, it had been completely isolated from the outside by naturally-built sand blocks. Yongcheon cave is a lime-decorated lava tube showing both the properties of a volcanic lava tube and a limestone cave. This cave, about 3 km in length, is acknowledged to be the best of this type in the world and includes a large clean-water lake, lava falls, and richly developed speleothems inside it. Even though there is archaeological evidence from well preserved pottery that ancient people entered this place, the preservation of artifacts was ensured by a geological change that made later entrance difficult. We have collected charcoal samples scattered around the cave and dated them using AMS. Ages were in the range of ca. 1570-1260 BP (A.D. 340-880) and this corresponds to the Ancient Three Kingdoms and the Unified Silla era in Korean history. The {sup 14}C AMS measurement results presented in this paper on wood charcoal provide precise dates which will be very useful not only to clarify the nature of human activities in this cave but also to provide reference dates when comparing other dating methods.

CaveMan Enterprise version 1.0 Software Validation and Verification.

Energy Technology Data Exchange (ETDEWEB)

Hart, David

2014-10-01

The U.S. Department of Energy Strategic Petroleum Reserve stores crude oil in caverns solution-mined in salt domes along the Gulf Coast of Louisiana and Texas. The CaveMan software program has been used since the late 1990s as one tool to analyze pressure mea- surements monitored at each cavern. The purpose of this monitoring is to catch potential cavern integrity issues as soon as possible. The CaveMan software was written in Microsoft Visual Basic, and embedded in a Microsoft Excel workbook; this method of running the CaveMan software is no longer sustainable. As such, a new version called CaveMan Enter- prise has been developed. CaveMan Enterprise version 1.0 does not have any changes to the CaveMan numerical models. CaveMan Enterprise represents, instead, a change from desktop-managed work- books to an enterprise framework, moving data management into coordinated databases and porting the numerical modeling codes into the Python programming language. This document provides a report of the code validation and verification testing.

Radon concentration measurements in the desert caves of Saudi Arabia

Energy Technology Data Exchange (ETDEWEB)

Al-Mustafa, Hanan [Women College, P. O. Box 838, Dammam 31113 (Saudi Arabia); Al-Jarallah, M.I. [Department of Physics, King Fahd University of Petroleum and Minerals, Dhahran 31261 (Saudi Arabia)]. E-mail: mibrahim@kfupm.edu.sa; Fazal-ur-Rehman [Department of Physics, King Fahd University of Petroleum and Minerals, Dhahran 31261 (Saudi Arabia); Abu-Jarad, F. [Radiation Protection Unit, Environmental Protection Department, Saudi Aramco P.O. Box 13027, Dhahran 31311 (Saudi Arabia)

2005-11-15

Beneath the harsh deserts of Saudi Arabia lie dark chambers and complex mazes filled with strange shapes and wondrous beauty. Radon concentration measurements have been carried out in the desert caves of Al-Somman Plateau in the Eastern Province of Saudi Arabia. Passive radon dosimeters, based on alpha particle etch track detectors with an inlet filter, were used in this study. A total of 59 dosimeters were placed in five caves for a period of six months. Out of 59 dosimeters, 37 could be collected for analysis. Measurements showed significant variations in radon concentrations in caves depending upon their natural ventilation. The results of the study show that the average radon concentration in the different caves ranges from 74 up to 451Bqm{sup -3}. The average radon concentration in four of the caves was low in the range 74-114Bqm{sup -3}. However, one cave showed an average radon concentration of 451Bqm{sup -3}. Radon is not a problem for tourists in the majority of caves. However, sometimes it may imply some limitation to the working time of guides.

Radon concentration measurements in the desert caves of Saudi Arabia

International Nuclear Information System (INIS)

Al-Mustafa, Hanan; Al-Jarallah, M.I.; Fazal-ur-Rehman; Abu-Jarad, F.

2005-01-01

Beneath the harsh deserts of Saudi Arabia lie dark chambers and complex mazes filled with strange shapes and wondrous beauty. Radon concentration measurements have been carried out in the desert caves of Al-Somman Plateau in the Eastern Province of Saudi Arabia. Passive radon dosimeters, based on alpha particle etch track detectors with an inlet filter, were used in this study. A total of 59 dosimeters were placed in five caves for a period of six months. Out of 59 dosimeters, 37 could be collected for analysis. Measurements showed significant variations in radon concentrations in caves depending upon their natural ventilation. The results of the study show that the average radon concentration in the different caves ranges from 74 up to 451Bqm -3 . The average radon concentration in four of the caves was low in the range 74-114Bqm -3 . However, one cave showed an average radon concentration of 451Bqm -3 . Radon is not a problem for tourists in the majority of caves. However, sometimes it may imply some limitation to the working time of guides

The architectural form of Qikou Cave dwellings in Chinese "Earth" culture

Science.gov (United States)

Chen, Xuanchen; Feng, Xinqun

2018-03-01

Cave building is not only a kind of architecture with unique style, but also a manifestation of Chinese traditional culture. Cave culture is an important part of Chinese traditional culture. The main purpose of this thesis which studies the architectural form of Qikou Cave, is to analyze how the cave building plays a positive role in promoting the development and application of modern resources and in cultural transmission. Based on a large amount of literature material, and taking Qikou Cave as an example, by studying the morphological characteristics of cave building, the paper takes an optimistic outlook on its future development and the sustainable development of the resources. It is expected that the cave culture can be further explored to promote the traditional Chinese culture and to drive the development of modern construction industry and resource conservation.

Effects of Sample Size and Dimensionality on the Performance of Four Algorithms for Inference of Association Networks in Metabonomics

NARCIS (Netherlands)

Suarez Diez, M.; Saccenti, E.

2015-01-01

We investigated the effect of sample size and dimensionality on the performance of four algorithms (ARACNE, CLR, CORR, and PCLRC) when they are used for the inference of metabolite association networks. We report that as many as 100-400 samples may be necessary to obtain stable network estimations,

Seasonal Temperature Variations controlling Cave Ventilation Processes in Cueva Larga, Puerto Rico

Science.gov (United States)

Winter, A.; Vieten, R.; Warken, S. F.; Schrӧder-Ritzrau, A.; Miller, T. E.; Scholz, D.

2016-12-01

Two years of monthly monitoring result in much better understanding of ventilation processes in caves. Cueva Larga, a tropical cave in Puerto Rico is 1440 m long with a large main passage (about 116,000 m3). Cave air pCO2 in the main passage varied seasonally, between 600 ppm in winter and 1800 ppm in summer. The seasonal variability in cave pCO2 made it possible to estimate a cave air exchange time of 36±5 days and a winter ventilation rate of 3,200±800 m3/day for the main cave passage. Calculations of virtual temperature and differences between cave and surface temperature show that the seasonal temperature cycle is the main driver of the alternation between a well-ventilated winter mode and a near-stagnant summer mode. The winter mode is characterized by a positive buoyancy contrast at night leading to maximal cave ventilation, while during summer ventilation is at a minimum. Between winter and summer, a transitional mode of partial cave ventilation is observed. On shorter time scales (diurnal to weekly), cave pCO2 is also influenced by atmospheric pressure but this variation is one order of magnitude lower than the seasonal pCO2 change. The cave morphology of Cueva Larga including its large volume, tubular shape and the obstructed cave entrance geometry are important boundary conditions for the observed ventilation patterns. Our findings emphasize that cave systems with varying morphology have to be studied individually in order to correctly describe ventilation processes.

An Inference Language for Imaging

DEFF Research Database (Denmark)

Pedemonte, Stefano; Catana, Ciprian; Van Leemput, Koen

2014-01-01

We introduce iLang, a language and software framework for probabilistic inference. The iLang framework enables the definition of directed and undirected probabilistic graphical models and the automated synthesis of high performance inference algorithms for imaging applications. The iLang framewor...

A world review of fungi, yeasts, and slime molds in caves

Directory of Open Access Journals (Sweden)

McAlpine Donald F.

2013-01-01

Full Text Available We provide a review of fungi, yeasts, and slime molds that have been found in natural solution caves and mines worldwide. Such habitats provide frequent roost sites for bats, and in eastern North America the environmental conditions that support white-nose syndrome, a lethal fungal disease currently devastating bat populations. A list of 1029 species of fungi, slime moulds, and yeasts in 518 genera have been documented from caves and mines worldwide in 225 articles. Ascomycota dominate the cave environment. Most research has been conducted in temperate climates, especially in Europe. A mean of 17.9±24.4SD fungal species are reported per study. Questions remain about the origin and ecological roles of fungi in caves, and which, if any, are cave-specialists. In the northern hemisphere, caves are generally characterized by relatively stable, low temperatures and a lack of organic substrates. This environment favors communities of oligotrophic, psychrotolerant fungi. Data that may help explain how cave environmental features and faunas inf luence the introduction and transmission of cave fungi remains scant.

World Register of marine Cave Species (WoRCS): a new Thematic Species Database for marine and anchialine cave biodiversity

NARCIS (Netherlands)

Gerovasileiou, Vasilis; Martínez, Alejandro; Álvarez, Fernando; Boxshall, Geoff; Humphreys, William F.; Jaume, Damià; Becking, L.E.; Muricy, Guilherme; Hengstum, van Peter J.; Dekeyzer, Stefanie; Decock, Wim; Vanhoorne, Bart; Vandepitte, Leen; Bailly, Nicolas; Iliffe, Thomas M.

2016-01-01

Scientific exploration of marine cave environments and anchialine ecosystems over recent decades has led to outstanding discoveries of novel taxa, increasing our knowledge of biodiversity. However, biological research on underwater caves has taken place only in a few areas of the world and relevant

A radon survey performed in caves in Slovenia

International Nuclear Information System (INIS)

Jovanovic, P.

2002-01-01

A survey of radon and radon decay product concentrations in several caves in a limestone region in Slovenia was initiated in 1986. In the period from 1989 to 1998, monthly surveys were undertaken in several caves which are open to tourists or used for speleotherapy purposes. The reason for carrying out these surveys, were dose estimates obtained for the guides and medical staff working in the caves. Daily average radon gas concentration determined ranged from several 100 Bq/m 3 up to 27 kBq/m 3 . Higher values were measured in the summer period. The equilibrium factors derived ranged from 0.05 to 0.89, with the higher values being measured in the winter period in vertical caves. In horizontal caves (with two entrances located opposite one another) these values ranged between 0.55 and 0.89. Annual doses estimated on the basis of various lung models ranged from 10 mSv to 85 mSv per year and per 2000 working hours. A significant difference was observed between the doses estimated by means of dosimetric models, and those estimated on the basis of the epidemiological model presented in ICRP 65. The value for the unattached fraction indicated in ICRP 65 is about 3%, but our measurements performed in the caves yielded higher values of up to 15%, with this highest value being determined in the Postojna cave. In the coming years, we will perform measurements to obtain the values for concentrations of unattached particles of radon daughters and values for particle-size distribution in the 3 different caves with the highest occupancy times for visitors. There are no regulations in force in Slovenia affecting exposures to elevated radon and radon daughter concentrations among underground workers. The health inspectorate can impose radiation monitoring measures for the purposes of performing dose calculations for underground workers. The results from such monitoring measures will contribute to the establishment of an ordinance regulating the performance of measurements at low

Study of aerosols collected in a speleotherapeutic cave situated below Budapest, Hungary

Energy Technology Data Exchange (ETDEWEB)

Kertesz, Zs. E-mail: zsofi@moon.atomki.hu; Borbely-Kiss, I.; Hunyadi, I

1999-04-02

The Szemlohegy-cave is one of the well-known hydrothermal caves of the Rozsadomb area of Budapest, which have been used for speleotherapy of respiratory diseases for years. It is known from the periodically changing airborne radon activity concentration data, that airflow of seasonally reversed direction are formed along the cave passages and fissures due to the temperature difference between the surface and cave air. This means that an intensive interaction takes place between the cave and its environment. The pollution of nearby waters and the urban atmospheric air represents a real danger for these caves below Buda, which recently became the part of the UNESCO World Heritage. The study of cave aerosols should be very important from the point of view of either the control possibilities of the environmental impact or speleotherapy, and probably helps in getting acquainted with the cave-forming processes. In this work we applied our standard aerosol sampling method to the high-humidity environment of the caves, and we studied the elemental composition, size fractionation as well as the spatial distribution and the seasonal variation of cave aerosols. Thanks to the sensitivity of PIXE traces of anthropogenic pollution of the Budapest air are shown in the Szemlohegy-cave. Measured elemental concentrations remained less than one-tenth the air quality standard valid for the increasingly protected areas.

Study of aerosols collected in a speleotherapeutic cave situated below Budapest, Hungary

International Nuclear Information System (INIS)

Kertesz, Zs.; Borbely-Kiss, I.; Hunyadi, I.

1999-01-01

The Szemlohegy-cave is one of the well-known hydrothermal caves of the Rozsadomb area of Budapest, which have been used for speleotherapy of respiratory diseases for years. It is known from the periodically changing airborne radon activity concentration data, that airflow of seasonally reversed direction are formed along the cave passages and fissures due to the temperature difference between the surface and cave air. This means that an intensive interaction takes place between the cave and its environment. The pollution of nearby waters and the urban atmospheric air represents a real danger for these caves below Buda, which recently became the part of the UNESCO World Heritage. The study of cave aerosols should be very important from the point of view of either the control possibilities of the environmental impact or speleotherapy, and probably helps in getting acquainted with the cave-forming processes. In this work we applied our standard aerosol sampling method to the high-humidity environment of the caves, and we studied the elemental composition, size fractionation as well as the spatial distribution and the seasonal variation of cave aerosols. Thanks to the sensitivity of PIXE traces of anthropogenic pollution of the Budapest air are shown in the Szemlohegy-cave. Measured elemental concentrations remained less than one-tenth the air quality standard valid for the increasingly protected areas

Chemical deposits in volcanic caves of Argentina

Directory of Open Access Journals (Sweden)

Carlos Benedetto

1998-01-01

Full Text Available During the last Conference of the FEALC (Speleological Federation of Latin America and Caribbean Islands which was held in the town of Malargue, Mendoza, in February 1997, two volcanic caves not far from that town were visited and sampled for cave mineral studies. The first cave (Cueva del Tigre opens close to the Llancanelo lake, some 40 kms far from Malargue and it is a classical lava tube. Part of the walls and of the fallen lava blocks are covered by white translucent fibres and grains. The second visited cave is a small tectonic cavity opened on a lava bed some 100 km southward of Malargue. The cave “El Abrigo de el Manzano” is long no more than 10-12 meters with an average width of 3 meters and it hosts several bird nests, the larger of which is characterized by the presence of a relatively thick pale yellow, pale pink flowstone. Small broken or fallen samples of the secondary chemical deposits of both these caves have been collected in order to detect their mineralogical composition. In the present paper the results of the detailed mineralogical analyses carried out on the sampled material are shortly reported. In the Cueva del Tigre lava tube the main detected minerals are Sylvite, Thenardite, Bloedite and Kieserite, all related to the peculiar dry climate of that area. The flowstone of “El Abrigo de el Manzano” consists of a rather complex admixture of several minerals, the large majority of which are phosphates but also sulfates and silicates, not all yet identified. The origin of all these minerals is related to the interaction between bird guano and volcanic rock.

Cave dwellings in the Mediterranean basin

Directory of Open Access Journals (Sweden)

Viedma Urdiales Eugenia María

2011-01-01

Full Text Available The construction and use of subterranean caves for different functions has been relatively commonplace throughout history in different regions around the world, especially in the Mediterranean basin. Some of them are still standing at the beginning of the 21st century, and are a good example of adaptation to the geographic environment, and a part of the historical heritage. Following a short overview of the different Mediterranean countries, this work pays special attention to the present use of caves as dwelling spaces in Italy, and particularly in Spain where the caves are currently in an interesting process of renovation to meet the needs of the present population. This process is helping to boost the local economy, and it is funded by both private and public sources in several towns in Andalusia (Spain.

Evolution and adaptation of marine annelids in interstitial and cave habitats

DEFF Research Database (Denmark)

Martinez Garcia, Alejandro

relatives in cave subterranean ecological refugia. Active colonization and ecological speciation to particular cave niches has been alternatively suggested, but the evaluation of that scenario is obscured by the dominance of crustaceans in anchialine habitats, ecologically similar out and inside caves....... The main goal of this thesis is to explore the evolutionary processes behind colonization and adaptation to submarine cave ecosystems in the Atlantic Ocean using annelids as a model, mainly when they involved ancestrally interstitial forms. In order to do that, we studied selected lineages of annelids...... with cave and interstitial representatives, mainly the families Protodrilidae, Nerillidae, Saccocirridae and Scalibregmatidae. The studies combined the characterization of ancestral and cave habitats, with morphological investigations and phylogenetic analyses founded on extensive taxon coverage...

Stratigraphy, U-Th chronology, and paleoenvironments at Gladysvale Cave: insights into the climatic control of South African hominin-bearing cave deposits.

Science.gov (United States)

Pickering, Robyn; Hancox, Phillip J; Lee-Thorp, Julia A; Grün, Rainer; Mortimer, Graham E; McCulloch, Malcolm; Berger, Lee R

2007-11-01

Gladysvale Cave is one of the few Plio-Pleistocene hominin-bearing cave sites in South Africa that contains a well-stratified cave fill with clastic sediments interspersed with flowstones. The clastic sediments can be divided into units based on the presence of intercalated flowstones, forming flowstone bounded units (FBU). Ten MC-ICP-MS uranium-series dates on several flowstone horizons in the Gladysvale Internal Deposit fan indicate deposition from the late mid-Pleistocene ( approximately 570 ka) to Holocene ( approximately 7 ka) during limited periods of higher effective moisture. Clastic sedimentation occurred during the interceding, presumably more arid, periods. This sequence is not consistent with earlier models for South African caves that simply assumed interglacial sedimentation and glacial erosion. (13)C/(12)C data suggest that flowstone tended to form during periods with higher proportions of C(3) plants in the local vegetation, while clastic sediments reflect higher proportions of C(4) grasses, although this is not always the case. We argue that flowstones are precipitated during periods of higher effective precipitation and restricted cave entrances, while clastic sediments accumulated during periods with more open vegetation. The sedimentary fill of the fossiliferous deposits are, therefore, highly episodic in nature, with large periods of time unlikely to be represented. This has serious implications for the other hominin-bearing caves close by, as these deposits are likely to be similarly episodic. This is especially pertinent when addressing extinction events and reconstructions of paleoenvironments, as large periods of time may be unrecorded. The Gladysvale Cave fill sediments may serve as a climatically forced chronostratigraphic model for these less well-stratified and well-dated Plio-Pleistocene sites.

The CAVE (TM) automatic virtual environment: Characteristics and applications

Science.gov (United States)

Kenyon, Robert V.

1995-01-01

Virtual reality may best be defined as the wide-field presentation of computer-generated, multi-sensory information that tracks a user in real time. In addition to the more well-known modes of virtual reality -- head-mounted displays and boom-mounted displays -- the Electronic Visualization Laboratory at the University of Illinois at Chicago recently introduced a third mode: a room constructed from large screens on which the graphics are projected on to three walls and the floor. The CAVE is a multi-person, room sized, high resolution, 3D video and audio environment. Graphics are rear projected in stereo onto three walls and the floor, and viewed with stereo glasses. As a viewer wearing a location sensor moves within its display boundaries, the correct perspective and stereo projections of the environment are updated, and the image moves with and surrounds the viewer. The other viewers in the CAVE are like passengers in a bus, along for the ride. 'CAVE,' the name selected for the virtual reality theater, is both a recursive acronym (Cave Automatic Virtual Environment) and a reference to 'The Simile of the Cave' found in Plato's 'Republic,' in which the philosopher explores the ideas of perception, reality, and illusion. Plato used the analogy of a person facing the back of a cave alive with shadows that are his/her only basis for ideas of what real objects are. Rather than having evolved from video games or flight simulation, the CAVE has its motivation rooted in scientific visualization and the SIGGRAPH 92 Showcase effort. The CAVE was designed to be a useful tool for scientific visualization. The Showcase event was an experiment; the Showcase chair and committee advocated an environment for computational scientists to interactively present their research at a major professional conference in a one-to-many format on high-end workstations attached to large projection screens. The CAVE was developed as a 'virtual reality theater' with scientific content and

OKVAR-Boost: a novel boosting algorithm to infer nonlinear dynamics and interactions in gene regulatory networks.

Science.gov (United States)

Lim, Néhémy; Senbabaoglu, Yasin; Michailidis, George; d'Alché-Buc, Florence

2013-06-01

Reverse engineering of gene regulatory networks remains a central challenge in computational systems biology, despite recent advances facilitated by benchmark in silico challenges that have aided in calibrating their performance. A number of approaches using either perturbation (knock-out) or wild-type time-series data have appeared in the literature addressing this problem, with the latter using linear temporal models. Nonlinear dynamical models are particularly appropriate for this inference task, given the generation mechanism of the time-series data. In this study, we introduce a novel nonlinear autoregressive model based on operator-valued kernels that simultaneously learns the model parameters, as well as the network structure. A flexible boosting algorithm (OKVAR-Boost) that shares features from L2-boosting and randomization-based algorithms is developed to perform the tasks of parameter learning and network inference for the proposed model. Specifically, at each boosting iteration, a regularized Operator-valued Kernel-based Vector AutoRegressive model (OKVAR) is trained on a random subnetwork. The final model consists of an ensemble of such models. The empirical estimation of the ensemble model's Jacobian matrix provides an estimation of the network structure. The performance of the proposed algorithm is first evaluated on a number of benchmark datasets from the DREAM3 challenge and then on real datasets related to the In vivo Reverse-Engineering and Modeling Assessment (IRMA) and T-cell networks. The high-quality results obtained strongly indicate that it outperforms existing approaches. The OKVAR-Boost Matlab code is available as the archive: http://amis-group.fr/sourcecode-okvar-boost/OKVARBoost-v1.0.zip. Supplementary data are available at Bioinformatics online.

Census of biodiversity in marine caves of the eastern Mediterranean Sea

Directory of Open Access Journals (Sweden)

V. GEROVASILEIOU

2015-03-01

Full Text Available Scientific information on the biodiversity of marine caves in the eastern Mediterranean is limited, especially when considering the extensively studied caves of the north-western and central Mediterranean. Aiming to enhance current knowledge regarding cave communities, this study represents a first assessment of the marine cave biota of the eastern Mediterranean, as this has been defined by the European Union’s Marine Strategy Framework Directive (MSFD. Information retrieved from an extensive overview of relevant scientific documents was combined with original data recorded from 23 marine caves of the north-eastern Mediterranean. Our results report a total of 520 taxa recorded in eastern Mediterranean marine caves to date, the majority of which are sponges, polychaetes, rhodophytes, bivalves, fishes, and gastropods. These include several protected, endemic, and alien species. However, not all taxonomic groups have been equally studied among different areas and future studies are expected to raise the number of endemic and alien species. The overall observed trend is that the reported species number is generally related to sampling effort and scientific expertise. The most well-studied marine cave communities of the eastern Mediterranean are those of the Aegean Sea (especially its northern sector, which presented the highest number of species, followed by those of the Levantine. Furthermore, our research in Aegean caves revealed numerous new records for the marine cave fauna of the eastern basin, while several species are reported for the first time in the marine cave habitat. The critical need for further scientific research, monitoring, and conservation of this unique ecosystem was highlighted by (i the presence of certain species endemic to the eastern Mediterranean coupled with a high proportion of alien species, especially in the Levantine, and (ii the marine cave habitat availability in isolated insular areas of the eastern Mediterranean.

An algebra-based method for inferring gene regulatory networks.

Science.gov (United States)

Vera-Licona, Paola; Jarrah, Abdul; Garcia-Puente, Luis David; McGee, John; Laubenbacher, Reinhard

2014-03-26

The inference of gene regulatory networks (GRNs) from experimental observations is at the heart of systems biology. This includes the inference of both the network topology and its dynamics. While there are many algorithms available to infer the network topology from experimental data, less emphasis has been placed on methods that infer network dynamics. Furthermore, since the network inference problem is typically underdetermined, it is essential to have the option of incorporating into the inference process, prior knowledge about the network, along with an effective description of the search space of dynamic models. Finally, it is also important to have an understanding of how a given inference method is affected by experimental and other noise in the data used. This paper contains a novel inference algorithm using the algebraic framework of Boolean polynomial dynamical systems (BPDS), meeting all these requirements. The algorithm takes as input time series data, including those from network perturbations, such as knock-out mutant strains and RNAi experiments. It allows for the incorporation of prior biological knowledge while being robust to significant levels of noise in the data used for inference. It uses an evolutionary algorithm for local optimization with an encoding of the mathematical models as BPDS. The BPDS framework allows an effective representation of the search space for algebraic dynamic models that improves computational performance. The algorithm is validated with both simulated and experimental microarray expression profile data. Robustness to noise is tested using a published mathematical model of the segment polarity gene network in Drosophila melanogaster. Benchmarking of the algorithm is done by comparison with a spectrum of state-of-the-art network inference methods on data from the synthetic IRMA network to demonstrate that our method has good precision and recall for the network reconstruction task, while also predicting several of the

Chronology of guitarrero cave, peru.

Science.gov (United States)

Lynch, T F; Gillespie, R; Gowlett, J A; Hedges, R E

1985-08-30

Dating by accelerator mass spectrometry of wooden artifacts, cord, and charcoal samples from Guitarrero Cave, Peru, supports the antiquity of South America's earliest textiles and other perishable remains. The new dates are consistent with those obtained from disintegration counters and leave little doubt about the integrity of the lower Preceramic layers and their early cultivars. Re-evaluation of the mode of deposition suggests that most of the remains resulted from short-term use of the cave in the eighth millennium B.C., with a possible brief human visit as early as 12,560 years ago.

Radon in New Zealand tourist caves

International Nuclear Information System (INIS)

Lyons, R.G.; Solomon, S.B.; Langroo, R.

1998-01-01

Seasonal average radon concentrations in 112 sites in 22 NZ tourist caves have been measured using track etch detectors over an annual cycle. Values ranged from -3 to nearly 10,000 Bq m -3 . Seasonal variation was also very marked with factors of over 50 for the same site in different seasons being recorded. Thirty six percent of the sites exceeded the ICRP guideline of 1000 Bq m -3 at which action to reduce exposure is recommended. Caves are fragile ecological and chemical systems, therefore, may be seriously adversely affected by standard techniques to reduce radon concentrations. They are also complex physical systems, and an understanding of the principles and parameters governing cave aerodynamics is essential when considering options to reduce exposure. This paper discusses possible causes for variations in radon concentrations observed in this study and the implications for viable actions

Radon measurements using track detector in Wadi Sannur cave

International Nuclear Information System (INIS)

Shahin, F.; Eissa, M.F.; Mostafa, R.M.

2008-01-01

The most important contributors to the committed effective dose received by population due to natural sources are the short-lived decay products of radon ( 222 Rn). In natural voids, such as caves, most radon will enter the system from diffusion across the rock-air interface. It is well known that factors such as air pressure and temperature control the distribution of radon. The radon concentration measurements in the Wadi Sannur cave in Beni-Suef governorate in the period from 14 th of July 2005 to 17 th of October 2005. The average radon concentrations in the right, left and whole first cave are 916.12 ± 179.09, 819.63 ± 54.72 and 873.90± 147.11 Bq m -3 respectively. The measurements were performed using track etch detector of type Cr-39. After exposure, all detectors were etched chemically in 6.25 M NaOH solution at 70 C degrees for 6 h. The tracks were counted with an optical microscope magnifying 400 times. The average temperature inside the first cave during the period of measurements is 25-26 C degrees. The annual effective doses for the workers and visitors in the cave have been calculated. The average radon concentration in the Wadi Sannur cave, was 873.90 ± 147.11 Bq m -3 . The annual effective doses for worker and visitor in the cave were 1.33 ± 0.24 and 0.041 ± 0.007 mSv respectively. The doses are within the international recommended dose of 1.15 mSv. (author)

Exposure of tour guides to Radon at the Cango caves

International Nuclear Information System (INIS)

Pule, O.J.; Lindsay, R.

2008-01-01

Full text: A study was commissioned by the National Nuclear Regulator of South Africa to investigate the radon levels in the Cango caves and the associated radiological exposure to tour guides. The Cango caves are about 1.3 km in length and are visited by about 300000 tourists per annum due to their natural beauty. This study followed an earlier investigation by the Department of Health which indicated levels in excess of 1000 Bqm -3 which could lead to excess exposure of the cave tour guides. Radon in the various cave chambers and radon exposure of tour guides was measured using RAD-7 continuous radon monitor, electrets ion chambers and personnel monitoring electrets respectively. The measurements in the cave were done during summer and winter seasons to determine any variations between the seasons. The occupancy time for individual guides and equilibrium factor were also investigated. The radon concentration in the cave range from 1000 Bqm -3 to more than 2000 Bqm -3 with equilibrium factor of approximately 0.4, and the variation between winter and summer measurements are insignificant. The radon exposure levels to tour guides differ due to various time periods they spent in the caves. The average dose to tour guides due to radon is 7 mSv -a and the highest exposure is about 10 mSv -a . The exposure to tourists is found to be insignificant due to time they spent in the cave. The regulatory authority is currently investigating what action is necessary to protect the tour guides. (author)

The WP-CAVE concept for an underground high-level nuclear waste repository

International Nuclear Information System (INIS)

Pettersson, G.

1984-02-01

A central, nearly spherical cave, of diameter 40 m is excavated in rock and the waste fuel is placed in it. The fuel canisters are placed in cylindrical holes in large concrete balls which are stored at the bottom of a central stack in the cave. Other empty balls fill the rest of the cave. By natural convection, the heat is evenly distributed in the cave and the surrounding central rock body. A clay barrier, which completely surrounds the rock body, prevents ground water circulation for a very long time and protects the cave against tectonic movements. The cave can store approx. 350 tons of fuel after the 10 years of intermediate storage

Adaptive Inference on General Graphical Models

OpenAIRE

Acar, Umut A.; Ihler, Alexander T.; Mettu, Ramgopal; Sumer, Ozgur

2012-01-01

Many algorithms and applications involve repeatedly solving variations of the same inference problem; for example we may want to introduce new evidence to the model or perform updates to conditional dependencies. The goal of adaptive inference is to take advantage of what is preserved in the model and perform inference more rapidly than from scratch. In this paper, we describe techniques for adaptive inference on general graphs that support marginal computation and updates to the conditional ...

Forensic Fluid Dynamics and the Indian Spring (1991) cave collapse problem

Science.gov (United States)

Nof, D.

2013-05-01

The collapse of the Indian spring cave (Florida) in 1991 was unique because it occurred while cave divers were in the cave. For the most part, the submerged cave is large enough to accommodate a passing truck so the cave divers were not in touch with its walls and it is hard to imagine why would it naturally collapse just when the divers were in it. Recently, Nof and Paldor (2010) resolved this apparent paradox by suggesting that resonance in the air pockets in the cavern, created by breathing (open circuit) divers, may have contributed to the collapse. In this scenario, divers present in the cavern during the dive may have (unknowingly) caused the collapse through the pressurized air/gas that they release with each breath. When the breathing period of the diver(s) matches the natural oscillations period of the "cave oscillator", the ensuing resonance causes the air pressure in the pockets to increase uncontrollably. Here, we place the above theory on a more solid ground. To do so, we first extended the resonance theory from our original two-pockets, symmetrical U-tube model (with two identical branches that were not specifically identified within the cave system) to a one (identified) pocket in the cavern and a very broad basin (identified, of course) that serves as the other branch of the U-tube. Our methodology is to apply familiar fluid dynamics principles to the situation that occurred in the cave. We did so, step-by-step, on the basis of our interviews with four out of the five surviving cave-divers. Namely, we dissected their testimonies to arrive at a physically plausible scenario determined on basis of a fluid dynamics application to the natural flow in the cave and the flow induced by the compressed air released by the divers as well as the collapsed mud. We found that the oscillation period was larger than what we earlier calculated (still relevant to the case, nevertheless), and that, in contrast to what most cave divers believe, there was a temporary

Analysis of the Condition and Development Opportunities of Cave Tourism in Primorsko-Goranska County

Directory of Open Access Journals (Sweden)

Rade Knežević

2011-04-01

Full Text Available This paper examines caves as morphological factors of tourism development in Primorsko-Goranska County. The primary aim is to promote cave heritage parallel with the development of cave tourism. The methodological framework is based on analyzing material in the archives of tourist boards, taking an inventory of cave resources (case study, conducting interviews, and making a SWOT analysis of cave tourism development. Research results show that caves represent a complex resource in the tourist trade of Primorsko-Goranska County, to which little importance has been attached up to date (priority being given to mass tourism. In the context of tourism development, caves fall into four groups. The first group comprises caves that have a long tradition, but show signs of aging as a tourism product. The second group includes caves that were once open to the public, but were later closed for some reason. The third group consists of caves on the seaside or seabed visited by speleologists-divers. The fourth group is made up of potential cave sites that have been evaluated as being attractive, but is located in hard-to-access areas, making their valorisation in tourism purpose more difficult. Only Lokvarka Cave has a substantial influence on the development of special interest tourism in Lokve, while in all other cases, the role of caves in the tourism offering needs to be revalorised.

The potential of perennial cave ice in isotope palaeoclimatology

International Nuclear Information System (INIS)

Yonge, Charles J.; MacDonald, William D.

1999-01-01

Perennial ice from caves on and to the east of the Canadian Great Divide yield delta O 18 and delta D values which are usually high measurements where compared with the average precipitation for the region. Furthermore, these ice data fall below and along lines of lower slope than the Global Meteoric Water Line. To explain the observed relationships, we propose the following process. a vapour-ice isotopic fractionation mechanism operates on warm season vapour when it precipitates as hoar ice on entering the caves. The subsequent fall of hoar to the cave floor through mechanical overloading along with ice derived from ground-water seepage (with a mean annual isotopic composition), results in massive ice formation of a mixed composition. This mixed composition is what is observed in the characteristic relationships found here. Such findings suggest that a warm versus cold climate interpretation for ancient cave ice may be the opposite of that found in the more familiar polar and glacial ice caves. (Author) 3 figs., 1 tab., 12 refs

Caving thickness effects of surrounding rocks macro stress shell evolving characteristics

Institute of Scientific and Technical Information of China (English)

XIE Guang-xiang; YANG Ke

2009-01-01

In order to explore the influence of different caving thicknesses on the MSS dis-tribution and evolving characteristics of surrounding rocks in unsymmetrical disposal and fully mechanized top-coal caving (FMTC), based on unsymmetrical disposal characteris-tics, the analyses of numerical simulation, material simulation and in-situ observation were synthetically applied according to the geological and technical conditions of the 1151(3) working face in Xieqiao Mine. The results show that the stress peak value of the MSS-base and the ratio of MSS-body height to caving thickness are nonlinear and inversely proportional to the caving thickness. The MSS-base width, the MSS-body height, the MSS-base distance to working face wall and the rise distance of MSS-base beside coal pillar are nonlinear and directly proportional to the caving thickness. The characteristics of MSS distribution and its evolving rules of surrounding rocks and the integrated caving thickness effects are obtained. The investigations will provide lots of theoretic references to the surrounding rocks' stability control of the working face and roadway, roadway layout, gas extraction and exploitation, and efficiency of caving, etc.

The biogeochemistry of anchialine caves: Progress and possibilities

Science.gov (United States)

Pohlman, John W.

2011-01-01

Recent investigations of anchialine caves and sinkholes have identified complex food webs dependent on detrital and, in some cases, chemosynthetically produced organic matter. Chemosynthetic microbes in anchialine systems obtain energy from reduced compounds produced during organic matter degradation (e.g., sulfide, ammonium, and methane), similar to what occurs in deep ocean cold seeps and mud volcanoes, but distinct from dominant processes operating at hydrothermal vents and sulfurous mineral caves where the primary energy source is mantle derived. This review includes case studies from both anchialine and non-anchialine habitats, where evidence for in situ chemosynthetic production of organic matter and its subsequent transfer to higher trophic level metazoans is documented. The energy sources and pathways identified are synthesized to develop conceptual models for elemental cycles and energy cascades that occur within oligotrophic and eutrophic anchialine caves. Strategies and techniques for testing the hypothesis of chemosynthesis as an active process in anchialine caves are also suggested.

Morphology and evolution of sulphuric acid caves in South Italy

Science.gov (United States)

D'Angeli, Ilenia M.; De Waele, Jo; Galdenzi, Sandro; Madonia, Giuliana; Parise, Mario; Vattano, Marco

2016-04-01

Sulphuric acid speleogenesis (SAS) related to the upwelling of acid water enriched in H2S and CO2 represents an unusual way of cave development. Since meteoric infiltration waters are not necessarily involved in speleogenesis, caves can form without the typical associated karst expressions (i.e. dolines) at the surface. The main mechanism of sulphuric acid dissolution is the oxidation of H2S (Jones et al., 2015) which can be amplified by bacterial mediation (Engel et al., 2004). In these conditions, carbonate dissolution associated with gypsum replacement, is generally believed to be faster than the normal epigenic one (De Waele et al., 2016). In Italy several SAS caves have been identified, but only few systems have been studied in detail: Frasassi and Acquasanta Terme (Marche)(Galdenzi et al., 2010), Monte Cucco (Umbria) (Galdenzi & Menichetti, 1995), and Montecchio (Tuscany) (Piccini et al., 2015). Other preliminary studies have been carried out in Calabria (Galdenzi, 2007) and Sicily (De Waele et al., 2016). Several less studied SAS cave systems located in South Italy, and in particular in Apulia (Santa Cesarea Terme), Sicily (Acqua Fitusa, Acqua Mintina) and Calabria (Mt. Sellaro and Cassano allo Ionio) have been selected in the framework of a PhD thesis on SAS caves and their speleogenesis. Using both limestone tablet weight loss (Galdenzi et al., 2012) and micro erosion meter (MEM) (Furlani et al., 2010) methods the dissolution rate above and under water in the caves will be quantified. Geomorphological observations, landscape analysis using GIS tools, and the analysis of gypsum and other secondary minerals (alunite and jarosite) (stable isotopes and dating) will help to reconstruct the speleogenetic stages of cave formation. Preliminary microbiological analysis will determine the microbial diversity and ecology in the biofilms. References Engel S.A., Stern L.A., Bennett P.C., 2004 - Microbial contributions to cave formation: New insight into sulfuric acid

An efficient forward–reverse expectation-maximization algorithm for statistical inference in stochastic reaction networks

KAUST Repository

Bayer, Christian

2016-02-20

© 2016 Taylor & Francis Group, LLC. ABSTRACT: In this work, we present an extension of the forward–reverse representation introduced by Bayer and Schoenmakers (Annals of Applied Probability, 24(5):1994–2032, 2014) to the context of stochastic reaction networks (SRNs). We apply this stochastic representation to the computation of efficient approximations of expected values of functionals of SRN bridges, that is, SRNs conditional on their values in the extremes of given time intervals. We then employ this SRN bridge-generation technique to the statistical inference problem of approximating reaction propensities based on discretely observed data. To this end, we introduce a two-phase iterative inference method in which, during phase I, we solve a set of deterministic optimization problems where the SRNs are replaced by their reaction-rate ordinary differential equations approximation; then, during phase II, we apply the Monte Carlo version of the expectation-maximization algorithm to the phase I output. By selecting a set of overdispersed seeds as initial points in phase I, the output of parallel runs from our two-phase method is a cluster of approximate maximum likelihood estimates. Our results are supported by numerical examples.

An efficient forward-reverse expectation-maximization algorithm for statistical inference in stochastic reaction networks

KAUST Repository

Vilanova, Pedro

2016-01-07

In this work, we present an extension of the forward-reverse representation introduced in Simulation of forward-reverse stochastic representations for conditional diffusions , a 2014 paper by Bayer and Schoenmakers to the context of stochastic reaction networks (SRNs). We apply this stochastic representation to the computation of efficient approximations of expected values of functionals of SRN bridges, i.e., SRNs conditional on their values in the extremes of given time-intervals. We then employ this SRN bridge-generation technique to the statistical inference problem of approximating reaction propensities based on discretely observed data. To this end, we introduce a two-phase iterative inference method in which, during phase I, we solve a set of deterministic optimization problems where the SRNs are replaced by their reaction-rate ordinary differential equations approximation; then, during phase II, we apply the Monte Carlo version of the Expectation-Maximization algorithm to the phase I output. By selecting a set of over-dispersed seeds as initial points in phase I, the output of parallel runs from our two-phase method is a cluster of approximate maximum likelihood estimates. Our results are supported by numerical examples.

Speleothem (Cave Deposit) Data

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Records of past temperature, precipitation, and other aspects of climate derived from mineral deposits found in caves. Parameter keywords describe what was measured...

Palaeoclimate Research in Villars Cave (Dordogne, SW-France

Directory of Open Access Journals (Sweden)

Genty Dominique

2008-10-01

Full Text Available Villars Cave is a typical shallow cave from South-West France (45.44°N; 0.78°E; 175 m asl that has provided several speleothempalaeoclimatic records such as the millennial scale variability of the Last Glacial period and the Last Deglaciation. Monitoring theVillars cave environment over a 13-year period has helped in the understanding of the stable isotopic speleothem content and inthe hydrology. For example, it was demonstrated that most of the calcite CaCO3 carbon comes from the soil CO2, which explainsthe sensitivity of the δ13C to any vegetation and climatic changes. Drip rate monitoring, carried out under four stalactites from thelower and upper galleries, has shown a well marked seasonality of the seepage water with high flow rates during winter and spring.A time delay of about two months is observed between the water excess (estimated from outside meteorological stations and thedrip rate in the cave. A great heterogeneity in the flow rate amplitude variations and in the annual quantity of water between twonearby stalactites is observed, confirming the complexity of the micro-fissure network system in the unsaturated zone. At a dailyscale, the air pressure and drip rates are anti-correlated probably because of pressure stress on the fissure network. Cave air CO2concentration follows soil CO2 production and is correlated with its δ13C content. Since the beginning of the monitoring, the cave airtemperature, in both lower and upper galleries, displays a warming trend of ~+0.4°C±0.1/10yrs. This might be the consequence ofthe outside temperature increase that reaches the Villars Cave galleries through thermal wave conduction. Chemistry monitoringover a few years has shown that the seepage water of the lower gallery stations is significantly more concentrated in trace and minorelements (i.e. Sr, Mg, Ba, U than the upper stations, probably due to the 10-20 m depth difference between these galleries, whichimplies a different seepage pathway

Determination of the Radon Concentration and Radioactivity Level in Karaca Cave

International Nuclear Information System (INIS)

Kara, A.

2008-01-01

In this study, the radon gas concentration in the Karaca cave which is open to tourism has been determined and the negative effects of radon gas on people were discussed. Karaca cave (Gumushane) is visited by many tourists every year. The measurements of radon gas concentration which affects the health of human beings negatively and even causes the lung cancer when it reaches high points have been done for the summer and winter season. LR-115 passive radon detector was used to determine radon concentrations in the cave both winter and summer season. The average radon concentration in the Karaca cave were determined as 823 Bq/m 3 and 1023 Bq/m 3 for the summer and winter season, respectively. Moreover, to find out the natural radioactivity in the cave, the gamma spectroscopic analysis of soil, stone and stalagmite samples were carried out and their relations with the radon gas in the cave atmosphere was analyzed

Urban landscape and architectural workshop Škocjan Caves 2007

Directory of Open Access Journals (Sweden)

Andrej Mahovič

2012-01-01

Full Text Available The fundamental aim and purpose of the Škocjan Caves 2007 student workshop was for students participating in the seminar of the Faculty of Architecture in Ljubljana to recognise and address some specific spatial and design issues for the further sustainable development of the Škocjan Caves. The working hypothesis of the workshop was that, in spite of significant results in the protection and development of the Caves which have been achieved in the past ten years, it is still necessary to address some spatial issues through an academic process, and to offer different architectural and spatial solutions. The aforesaid is even more important as the Caves are recognised as the only natural and cultural heritage of the Republic of Slovenia to be listed as a UNESCO World Heritage site since 1986.

Tamarugite from Diana Cave (SW Romania) -first true karst occurrence

Science.gov (United States)

Pušcaš, C. M.; Onac, B. P.; Effenberger, H. S.; Povarǎ, I.

2012-04-01

Diana Cave is located within the town limits of Baile Herculane (SW Romania) and develops as a 14 m long, westward oriented, unique passage guided by the Diana fault [1]. At the far end of the cave, the thermo-mineral Diana Spring wells forth. In the early 1970s a mine gallery that intersected the cave was created to drain the water into a pumping station and the original cave passage was somewhat altered and reinforced with concrete. Today the concrete and the silty limestone cave walls are heavily corroded by H2SO4 outgassing from the hot water (ca. 50°C) and display abundant gypsum crusts, soggy aggregates of native S, and a variety of more exotic sulfates. Among them, a mineral that has been previously identified in caves only in connection to volcanic activity, either as thermal springs or fumaroles [2]: tamarugite [NaAl(SO4)26H2O]. It was [3] that first mentioned the occurrence of this Na and Al sulfate in Diana Cave, our research aiming to give a detailed description of this mineral, its paragenesis, and mechanisms of precipitation. Recently, tamarugite has also been identified in a sulfuric acid cave from Greece [4]. Along with powder X-ray diffractions coupled with Rietveld refinement, scanning electron microscope, and electron probe micro-analysis, δ18O and δ34S compositions of the sulfate mineral as well as precipitates from the water were analyzed to identify and better constrain the genesis of this rare sulfate. Regrettably, the crystal size of our specimens is inappropriate for identification by means of single crystal X-ray diffraction. Physical and chemical parameters of Diana Spring were as well measured on several occasions. Geochemical analysis suggests that the minute, white tamarugite flakes precipitated in Diana Cave as a result of the interactions between the thermo-mineral water or water vapor and the original limestone bedrock and concrete that blankets the mine gallery. [1] Povara, I., Diaconu, G., Goran, C. (1972). Observations pr

Inferring anatomical therapeutic chemical (ATC) class of drugs using shortest path and random walk with restart algorithms.

Science.gov (United States)

Chen, Lei; Liu, Tao; Zhao, Xian

2018-06-01

The anatomical therapeutic chemical (ATC) classification system is a widely accepted drug classification scheme. This system comprises five levels and includes several classes in each level. Drugs are classified into classes according to their therapeutic effects and characteristics. The first level includes 14 main classes. In this study, we proposed two network-based models to infer novel potential chemicals deemed to belong in the first level of ATC classification. To build these models, two large chemical networks were constructed using the chemical-chemical interaction information retrieved from the Search Tool for Interactions of Chemicals (STITCH). Two classic network algorithms, shortest path (SP) and random walk with restart (RWR) algorithms, were executed on the corresponding network to mine novel chemicals for each ATC class using the validated drugs in a class as seed nodes. Then, the obtained chemicals yielded by these two algorithms were further evaluated by a permutation test and an association test. The former can exclude chemicals produced by the structure of the network, i.e., false positive discoveries. By contrast, the latter identifies the most important chemicals that have strong associations with the ATC class. Comparisons indicated that the two models can provide quite dissimilar results, suggesting that the results yielded by one model can be essential supplements for those obtained by the other model. In addition, several representative inferred chemicals were analyzed to confirm the reliability of the results generated by the two models. This article is part of a Special Issue entitled: Accelerating Precision Medicine through Genetic and Genomic Big Data Analysis edited by Yudong Cai & Tao Huang. Copyright © 2017 Elsevier B.V. All rights reserved.

Depth Perception in Cave and Panorama

DEFF Research Database (Denmark)

Mullins, Michael; Strojan, Tadeja Zupancic

2004-01-01

This study compares aspects of spatial perception in a physical environment and its virtual representations in a CAVE and Panorama, derived from recent research. To measure accuracy of spatial perception, participants in an experiment were asked to look at identical objects in the three environme......, learning and training in virtual environments; in architectural education; and participatory design processes, in which the dialogue between real and imagined space may take place in virtual . reality environments...... environments and then locate them and identify their shape on scaled drawings.  Results are presented together with statistical analysis. In a discussion of the results, the paper addresses the two hypothetical assertions ? that depth perception in physical reality and its virtual representations in CAVE......This study compares aspects of spatial perception in a physical environment and its virtual representations in a CAVE and Panorama, derived from recent research. To measure accuracy of spatial perception, participants in an experiment were asked to look at identical objects in the three...

Ensemble stacking mitigates biases in inference of synaptic connectivity.

Science.gov (United States)

Chambers, Brendan; Levy, Maayan; Dechery, Joseph B; MacLean, Jason N

2018-01-01

A promising alternative to directly measuring the anatomical connections in a neuronal population is inferring the connections from the activity. We employ simulated spiking neuronal networks to compare and contrast commonly used inference methods that identify likely excitatory synaptic connections using statistical regularities in spike timing. We find that simple adjustments to standard algorithms improve inference accuracy: A signing procedure improves the power of unsigned mutual-information-based approaches and a correction that accounts for differences in mean and variance of background timing relationships, such as those expected to be induced by heterogeneous firing rates, increases the sensitivity of frequency-based methods. We also find that different inference methods reveal distinct subsets of the synaptic network and each method exhibits different biases in the accurate detection of reciprocity and local clustering. To correct for errors and biases specific to single inference algorithms, we combine methods into an ensemble. Ensemble predictions, generated as a linear combination of multiple inference algorithms, are more sensitive than the best individual measures alone, and are more faithful to ground-truth statistics of connectivity, mitigating biases specific to single inference methods. These weightings generalize across simulated datasets, emphasizing the potential for the broad utility of ensemble-based approaches.

Management in a neotropical show cave: planning for invertebrates conservation

Directory of Open Access Journals (Sweden)

Thais Giovannini Pellegrini

2012-07-01

Full Text Available Lapa Nova is a dolomitic cave about 4.5 km long located in northwestern Minas Gerais state, Brazil. The cave experiences intense tourism, concentrated over a single period of the year, during the Feast of Our Lady of Lapa. In order to evaluate the impacts felt by the invertebrate community from this tourism, a new methodology was proposed. Four types of areas (intense visitation area, outlying visitation areas, moderate visitation areas and no-visitation areas were sampled for invertebrates. There was one sampling prior and another on the last day of the 128th feast, to evaluate the effects of visitation on cave-dwelling invertebrates. Results show that invertebrate populations residing in more intensely visited areas of the cave undergo changes in distribution following the event. As a consequence of tourism, invertebrates shift to outlying locations from the visited area, which serve as refuges to the communities. Apparently, the fact that there are places inside Lapa Nova inaccessible to tourists reduces the impact suffered by the invertebrate community, as those sites serve as refuges for cave-dwelling organisms during the pilgrimage. A proper management plan was devised for the tourism/religious use of the cave. It consists basically of delimiting marked pathways for tourists, allowing invertebrates to seek shelter at locations outside visited areas and keeping no-visitation areas off-limits to tourism based on the results of the visitation effects on cave-dwelling invertebrates.

Candidate cave entrances on Mars

Science.gov (United States)

Cushing, Glen E.

2012-01-01

This paper presents newly discovered candidate cave entrances into Martian near-surface lava tubes, volcano-tectonic fracture systems, and pit craters and describes their characteristics and exploration possibilities. These candidates are all collapse features that occur either intermittently along laterally continuous trench-like depressions or in the floors of sheer-walled atypical pit craters. As viewed from orbit, locations of most candidates are visibly consistent with known terrestrial features such as tube-fed lava flows, volcano-tectonic fractures, and pit craters, each of which forms by mechanisms that can produce caves. Although we cannot determine subsurface extents of the Martian features discussed here, some may continue unimpeded for many kilometers if terrestrial examples are indeed analogous. The features presented here were identified in images acquired by the Mars Odyssey's Thermal Emission Imaging System visible-wavelength camera, and by the Mars Reconnaissance Orbiter's Context Camera. Select candidates have since been targeted by the High-Resolution Imaging Science Experiment. Martian caves are promising potential sites for future human habitation and astrobiology investigations; understanding their characteristics is critical for long-term mission planning and for developing the necessary exploration technologies.

Differential preservation of vertebrates in Southeast Asian caves

Directory of Open Access Journals (Sweden)

Julien Louys

2017-09-01

Full Text Available Caves have been an important source of vertebrate fossils for much of Southeast Asia, particularly for the Quaternary. Despite this importance, the mechanisms by which vertebrate remains accumulate and preserve in Southeast Asian caves has never been systematically reviewed or examined. Here, we present the results of three years of cave surveys in Indonesia and Timor-Leste, describing cave systems and their attendant vertebrate accumulations in diverse geological, biogeographical, and environmental settings. While each cave system is unique, we find that the accumulation and preservation of vertebrate remains are highly dependent on local geology and environment. These factors notwithstanding, we find the dominant factor responsible for faunal deposition is the presence or absence of biological accumulating agents, a factor directly dictated by biogeographical history. In small, isolated, volcanic islands, the only significant accumulation occurs in archaeological settings, thereby limiting our understanding of the palaeontology of those islands prior to human arrival. In karstic landscapes on both oceanic and continental islands, our understanding of the long-term preservation of vertebrates is still in its infancy. The formation processes of vertebrate-bearing breccias, their taphonomic histories, and the criteria used to determine whether these represent syngenetic or multiple deposits remain critically understudied. The latter in particular has important implications for arguments on how breccia deposits from the region should be analysed and interpreted when reconstructing palaeoenvironments.

X-ray analysis of aerosol samples from a therapeutic cave

Energy Technology Data Exchange (ETDEWEB)

Alfoeldy, B. E-mail: alfi@sunserv.kfki.hu; Toeroek, Sz.; Kocsonya, A.; Szokefalvi-Nagy, Z.; Balla, Md.I

2001-04-01

Cave therapy is an efficient therapeutic method to cure asthma, the exact healing effect, however, is not clarified, yet. This study is motivated by the basic assumption that aerosols do play the key role in the cave therapy. This study is based on measurements of single aerosol particles originating from a therapeutic cave of Budapest, Hungary (Szemlohegyi cave). Aerosol particles have been collected in the regions arranged for the therapeutic treatment. Samples were further analysed for chemical and morphological aspects, determining the particle size distribution and classifying them according to elemental composition. Three particle classes have been detected based on major element concentration: alumino-silicate, quartz and calcium carbonate. Calcium ions have well-known physiological influence: anti-spastic, anti-inflammation and excretion reducing effects. Inflammation, accompanying spasm and extreme excretion production cause the smothering stigma, the so-called asthma. Therefore it could be assumed that calcium ions present in high concentration in the cave's atmosphere is the major cause of the healing effect.

X-ray analysis of aerosol samples from a therapeutic cave

International Nuclear Information System (INIS)

Alfoeldy, B.; Toeroek, Sz.; Kocsonya, A.; Szokefalvi-Nagy, Z.; Balla, Md.I.

2001-01-01

Cave therapy is an efficient therapeutic method to cure asthma, the exact healing effect, however, is not clarified, yet. This study is motivated by the basic assumption that aerosols do play the key role in the cave therapy. This study is based on measurements of single aerosol particles originating from a therapeutic cave of Budapest, Hungary (Szemlohegyi cave). Aerosol particles have been collected in the regions arranged for the therapeutic treatment. Samples were further analysed for chemical and morphological aspects, determining the particle size distribution and classifying them according to elemental composition. Three particle classes have been detected based on major element concentration: alumino-silicate, quartz and calcium carbonate. Calcium ions have well-known physiological influence: anti-spastic, anti-inflammation and excretion reducing effects. Inflammation, accompanying spasm and extreme excretion production cause the smothering stigma, the so-called asthma. Therefore it could be assumed that calcium ions present in high concentration in the cave's atmosphere is the major cause of the healing effect

WP-Cave - assessment of feasibility, safety and development potential

International Nuclear Information System (INIS)

1989-09-01

According to SKB R and D-programme 1986, alternative disposal methods will be investigated to provide a basis for selecting a site and a repository system for the Swedish spent nuclear fuel. The present report is a comparison between the WP-Cave and the reference concept KBS-3. The comparison has resulted in the following conclusions: - Both concepts are judged to be able to provide adequate safety. - A utilization of the potential of the WP-Cave requires, however, extensive development in areas where the current state of knowledge and available data are incomplete. - The higher temperatures in the WP-Cave lead to greater uncertainty as to long-term performance. Reducing this uncertainty would require many yaers of research and substantial resources. - Both repositories, including the barriers they incorporate, could be built with a normal adaption of available technology. -It is not possible to say today whether it would be simpler to find suitable sites for one design or the other. - The WP-Cave is considerably more expensive. A future research direction based on a concentrated emplacement of spent fuel along the lines of the WP-Cave is therefore judged to entail greater uncertainty as regards the possibilities of achieving acceptable safety and to require greater resources for research and development, at the same time as the costs of building the repository would be higher. The studies of the WP-Cave as an integral system should therfore be discontinued. Certain barrier designs in the WP-Cave could also be utulized in repository designs with lower temperature, for example the reduction potential of the steel canisters and the hydraulic cage's diversion of groundwater. Studies within these areas are being conducted within SKB and should continue

Little Ice Age versus Present Day: Comparison of Temperature, Precipitation and Seasonality in Speleothem Records from the Han-sur-Lesse Cave, Belgium.

Science.gov (United States)

Vansteenberge, S.; Van Opdenbosch, J.; Van Rampelbergh, M.; Verheyden, S.; Keppens, E.; Cheng, H.; Edwards, R. L.; Claeys, P. F.

2015-12-01

The Proserpine stalagmite is a 2 m large, tabular-shaped speleothem located in the Han-sur-Lesse cave in Belgium. The speleothem formed over the last 1000 years and is still growing. High-accuracy U/Th datings have indicated exceptionally high growth-rates of up to 2 mm per year. This, together with a well expressed annual layering, makes the Proserpine stalagmite an ideal candidate for high-resolution paleoclimate reconstructions of the last millennium. Previous work, including over 10 years of cave monitoring, has already learned us how short-term, i.e. decadal to seasonal, climate variations are incorporated within speleothem calcite from the Han-sur-Lesse cave system. It has been shown that δ18O and δ13C stable isotopes and trace element proxies of recently formed calcite reflect seasonal variations in temperature and precipitation of the near-cave environment (Verheyden et al, 2008; Van Rampelbergh et al., 2014). Now, this knowledge was used to infer local climate parameters further back in time to the period of +/- 1620-1630 CE, corresponding to one of the cold peaks within the Little Ice Age. Speleothem calcite was sampled at sub-annual resolution, with approximately 11 samples per year, for stable isotope analysis. LA-ICP-MS and µXRF analyses resulted in time series of trace elements. Preliminary results indicate a well expressed seasonal signal in δ13C and trace element composition but a multi-annual to decadal trend in δ18O. This combined proxy study eventually enables comparison of the expression of seasonality and longer term climate variations between a Little Ice Age cold peak and Present Day. References: Verheyden, S. et al., 2008, Monitoring climatological, hydrological and geochemical parameters in the Père Noël cave (Belgium): implication for the interpretation of speleothem isotopic and geochemical time-series. International Journal of Speleology, 37(3), 221-234. Van Rampelbergh, M. et al., 2014, Seasonal variations recorded in cave

The role of natural ventilation in the exposure to radon in the Postojna Cave

Science.gov (United States)

Gregorič, A.; Smerajec, M.; Vaupotič, J.

2012-04-01

Postojna Cave is the biggest of 21 show caves in Slovenia and one of present day's most visited show caves in the world. Long and branched out cave system, large entrances at different levels, inflow of the Pivka river, and large variation of the outdoor air temperature and precipitation, make the Postojna Cave also a very complex climatic system in which each part shows different conditions. The cave is only naturally ventilated and it is therefore characterised by high radon concentration, which depends on the ventilation regime in different seasons, resulting in typical annual cycles of radon levels in the cave air. Postojna Cave is a typical horizontal cave, where the difference between outside and cave air temperature represents the main driving force for air circulation. In winter, when the cave temperature is higher than outside, cave air is released from the cave into the outdoor atmosphere due to the air draught caused by the 'chimney effect', thus allowing fresh and cold outdoor air to enter the cave through low lying openings. This effect is not operative in summer, when the outside temperature is higher than in the cave, and air draught is minimal or reversed. In addition, air circulation can be locally altered due to other processes, like changing level of Pivka river during the rainy season and local geomorphologic characteristics of cave passages. High radon concentration in the Postojna Cave is the reason for thorough studies of the methodology for dose estimates of the personnel working in the cave. Due to high relative humidity and low air circulation, the cave air is characterised by very low particle concentration, which play an important role in radon dosimetry. Therefore parallel monitoring of radioactive aerosols of radon decay products (RnDP) and general (non-radioactive) aerosols in the particle size range of 10-1100 nm was performed in the air of Postojna Cave at the lowest point of tourist path in summer, winter and both transitional

Intelligent PID controller based on ant system algorithm and fuzzy inference and its application to bionic artificial leg

Institute of Scientific and Technical Information of China (English)

谭冠政; 曾庆冬; 李文斌

2004-01-01

A designing method of intelligent proportional-integral-derivative(PID) controllers was proposed based on the ant system algorithm and fuzzy inference. This kind of controller is called Fuzzy-ant system PID controller. It consists of an off-line part and an on-line part. In the off-line part, for a given control system with a PID controller,by taking the overshoot, setting time and steady-state error of the system unit step response as the performance indexes and by using the ant system algorithm, a group of optimal PID parameters K*p , Ti* and T*d can be obtained, which are used as the initial values for the on-line tuning of PID parameters. In the on-line part, based on Kp* , Ti*and Td* and according to the current system error e and its time derivative, a specific program is written, which is used to optimize and adjust the PID parameters on-line through a fuzzy inference mechanism to ensure that the system response has optimal transient and steady-state performance. This kind of intelligent PID controller can be used to control the motor of the intelligent bionic artificial leg designed by the authors. The result of computer simulation experiment shows that the controller has less overshoot and shorter setting time.

Visualization framework for CAVE virtual reality systems

OpenAIRE

Kageyama, Akira; Tomiyama, Asako

2016-01-01

We have developed a software framework for scientific visualization in immersive-type, room-sized virtual reality (VR) systems, or Cave automatic virtual environment (CAVEs). This program, called Multiverse, allows users to select and invoke visualization programs without leaving CAVE’s VR space. Multiverse is a kind of immersive “desktop environment” for users, with a three-dimensional graphical user interface. For application developers, Multiverse is a software framework with useful class ...

Investigation of Sediment Pathways and Concealed Sedimentological Features in Hidden River Cave, Kentucky

Science.gov (United States)

Feist, S.; Maclachlan, J. C.; Reinhardt, E. G.; McNeill-Jewer, C.; Eyles, C.

2016-12-01

Hidden River Cave is part of a cave system hydrogeologically related to Mammoth Cave in Kentucky and is a multi-level active cave system with 25km of mapped passages. Upper levels experience flow during flood events and lower levels have continuously flowing water. Improper industrial and domestic waste disposal and poor understanding of local hydrogeology lead to contamination of Hidden River Cave in the early 1940s. Previously used for hydroelectric power generation and as a source of potable water the cave was closed to the public for almost 50 years. A new sewage treatment plant and remediation efforts since 1989 have improved the cave system's health. This project focuses on sedimentological studies in the Hidden River Cave system. Water and sediment transport in the cave are being investigated using sediment cores, surface sediment samples and water level data. An Itrax core scanner is used to analyze sediment cores for elemental concentrations, magnetic susceptibility, radiography, and high resolution photography. Horizons of metal concentrations in the core allow correlation of sedimentation events in the cave system. Thecamoebian (testate amoebae) microfossils identified in surface samples allow for further constraint of sediment sources, sedimentation rates, and paleoclimatic analysis. Dive recorders monitor water levels, providing data to further understand the movement of sediment through the cave system. A general time constraint on the sediment's age is based on the presence of microplastic in the surface samples and sediment cores, and data from radiocarbon and lead-210 dating. The integration of various sedimentological data allows for better understanding of sedimentation processes and their record of paleoenvironmental change in the cave system. Sediment studies and methodologies from this project can be applied to other karst systems, and have important applications for communities living on karst landscapes and their water management policies.

Uranium-series dating of fossil bones from alpine caves

International Nuclear Information System (INIS)

Leitner-Wild, E.; Steffan, I.

1993-01-01

During the course of an investigation of fossil cave bear populations the uranium-series method for absolute age determination has been applied to bone material. The applicability of the method to bone samples from alpine caves is demonstrated by the concordance of U/Th and U/Pa ages and cross-checks with the radiocarbon method. Stratigraphic agreement between bone ages and carbonate speleothem ages also indicates the potential of the uranium-series method as a suitable tool for the age determination of fossil bones from alpine cave environments. (Author)

Modeling of luminance distribution in CAVE-type virtual reality systems

Science.gov (United States)

Meironke, Michał; Mazikowski, Adam

2017-08-01

At present, one of the most advanced virtual reality systems are CAVE-type (Cave Automatic Virtual Environment) installations. Such systems are usually consisted of four, five or six projection screens and in case of six screens arranged in form of a cube. Providing the user with a high level of immersion feeling in such systems is largely dependent of optical properties of the system. The modeling of physical phenomena plays nowadays a huge role in the most fields of science and technology. It allows to simulate work of device without a need to make any changes in the physical constructions. In this paper distribution of luminance in CAVE-type virtual reality systems were modelled. Calculations were performed for the model of 6-walled CAVE-type installation, based on Immersive 3D Visualization Laboratory, situated at the Faculty of Electronics, Telecommunications and Informatics at the Gdańsk University of Technology. Tests have been carried out for two different scattering distribution of the screen material in order to check how these characteristicinfluence on the luminance distribution of the whole CAVE. The basis assumption and simplification of modeled CAVE-type installation and results were presented. The brief discussion about the results and usefulness of developed model were also carried out.

Tamarugite in the Steam-Condensate Alteration Paragenesis in Diana Cave (SW Romania)

Science.gov (United States)

Puscas, C. M.; Onac, B. P.; Effenberger, H. S.; Povară, I.

2012-12-01

The double-salt hydrate tamarugite [NaAl(SO4)2 6H2O] is an uncommon mineral in the cave environment, forming as a result of chemical reactions between water and bedrock only under very specific conditions. The Diana Cave hosts a unique tamarugite occurrence, the first one to be reported from a typical karst environment. The cave is located within the limits of Băile Herculane township in the Cerna Mountains, SW Romania. It consists of a 14 m long, westward-oriented single passage, developed along the Diana Fault. In 1974 a concrete-clad mine gallery was created to channel the thermal water (Diana 1+2 Spring) flowing through the cave to a pumping station. The spring's chemical and physical parameters fluctuated through time, averaging 51.98° C, discharge of 0.96 Ls-1, pH of 7.46, 5768.66 ppm TDS, 9303 μScm-1 conductivity, 5.02 salinity. The major chemical components of the thermo-mineral water in Diana Cave are, Na+ (1392.57 ppm), K+ (58.55 ppm), Ca2+ (725.16 ppm), Mg2+ (10.78 ppm), Cl- (3376.83 ppm), and SO42- (92.27 ppm), and H2S (24.05 ppm), with traces of Si, Fe2+, Br+, I-, and Li+. The general air circulation pattern within the cave is fairly simple: cold air from the outside sweeps into the cave along the floor, heats up at the contact with the thermo-mineral water, ascends, and exists the cave along the ceiling. At the contact with the cold walls of the Diana Cave, the hot steam condenses and gives rise to a rich and exotic sulfate-mineral paragenesis (including halotrichite-series minerals, gypsum, bassanite, anhydrite, epsomite, alunite, halite, native sulfur, etc.). The most exotic minerals precipitate at or below the contact between the Tithonic - Neocomian limestone and the overlaying Cretaceous shaly limestone, as a result of steam-condensate alteration. Minerogenetic mechanisms responsible for the peculiar sulfate mineral assemblage in Diana Cave are evaporation, oxidation, hydrolysis, double exchange reactions, and deposition from vapours or

First assessment on the air CO2 dynamic in the show caves of tropical karst, Vietnam

Directory of Open Access Journals (Sweden)

Duc A. Trinh

2018-01-01

Full Text Available In this study, air, water, and host rock in show caves in a Vietnam’s karst region was monitored and analyzed to identify the ventilation regime and track the cave air CO2 sources. In general, the studied caves are well ventilated. In dynamic – multiple entrance caves, air ventilation is described with the use of U shape model. In static – single entrance cave, air circulation is explained by cold air trap model. Both ventilation models suggest that air is more circulated in winter than in summer. Seasonally, the cave air CO2 increases from early spring to summer. Value in the deepest part of the single-entrance cave is approximately 1,000 ppmv and 8,000 ppmv in early spring and summer, respectively. In multiple-entrance and wet caves, CO2 level is fairly constant all over the show section, increasing from 500 ppmv in early spring to 2,000 ppmv in summer. Data of microclimate, CO2 content, and particularly δ13C show that cave air, particularly in single entrance cave, has higher CO2 concentration during summer due to a stagnation of cave air circulation and an elevated CO2 input from soil and epikarst. The cave air CO2 increase is also observed after intense rainfalls. A factor that increase cave air CO2 in show caves during the festive days could probably be huma n exhaling but the extent of human factor in these studied cave systems should be further investigated. Cave waters including cave pools and streams mediate CO2 level in wet caves. Above all, the atmospheric fraction of CO2 is always dominant (>60% in all cave sections.

Measurements of Aerosol Characteristics in Skocjan Caves

International Nuclear Information System (INIS)

Jovanovic, P.

2013-01-01

Measurements of radon concentration and radon progeny concentration (attached and unattached) have been performed in Skocjan caves. In the same time also aerosol concentration (PM 10 ), aerosol size distribution with ten stage Hauke impactor and Scanning Mobility Particle Sizer - SMPS have been performed. The idea was to find impact of outer air and visitors to the aerosol characteristics of cave air. Measurements with impactor have been implemented in summer and winter period, with SMPS only in summer period. Radon concentrations ranged in winter period in region from 500 to 1000 Bq/m 3 , equilibrium factor was about 55 %. In summer period radon concentration increased up to 10 kBq/m 3 , equilibrium factor was about 45 %, and unattached fraction went up to 20 %. Measurements of aerosol size distribution show lower aerosol sizes in winter season (around 1 μm) and bigger aerosol sizes in summer season (around 3 - 6 μm). We could not find good correlation between unattached fraction and aerosol size distribution. Also we could not find clear impact of visitors to the air characteristics in cave. Probably our measuring location was too close to the entrance and the impact of outer air was too high. We will repeat measurements deeper in cave to find better results.(author)

The genesis of a lava cave in the Deccan Volcanic Province (Maharashtra, India

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Nikhil R. Pawar

2016-01-01

Full Text Available Lava tubes and channels forming lava distributaries have been recognized from different parts of western Deccan Volcanic Province (DVP. Openings of smaller dimension have been documented from the pāhoehoe flows around Pune, in the western DVP. A small lava cave is exposed in Ghoradeshwar hill, near Pune. Detailed field studies of the physical characteristics, structure and morphology of the flows hosting the lava tube has been carried out. This is the first detailed documentation of a lava cave from the DVP. The lava cave occurs in a compound pāhoehoe flow of Karla Formation, characterized by the presence of lobes, toes and small scale features like squeeze-ups. Field observations and measurements reveal that the dimensions of the cave are small, with low roof and a maximum width of 108 cm. The cave morphology along the 20 m passage varies from circular to semi-circular, with a twilight zone to the north. The gentle micro-topography at Ghoradeshwar controlled the advancement of pāhoehoe lobes and toes within the sheet lobe. The pre-flow gradients towards the north led to the progression of flow from the east, where the cave opening is presently seen. Dimensions and related morphology of the lava cave suggest that it can be best described as a small sub-crustal cave formed by draining of an inflated of pāhoehoe lava lobe. At Ghoradeshwar, besides the natural lava cave, Buddhist caves carved in pāhoehoe lava flows are also observed, indicating that early man took advantage of the existing openings in pāhoehoe flows and sculpted the caves to suit their requirements.

High Resolution Time Series Cave Ventilation Processes and the Effects on Cave Air Chemistry and Drip Waters: Speleoclimatology and Proxy Calibration

Science.gov (United States)

Kowalczk, A. J.; Froelich, P. N.; Gaffka, C.; Tremaine, D.

2008-12-01

Continuous high resolution (sub-hourly), long-term (Nov 2007-present) monitoring of cave air chemistry (Temperature, Relative Humidity, Barometric Pressure, Radon-222, CO2, Air flow, Wind speed and direction) in a shallow subtropical cave (Hollow Ridge) in N Florida reveals two major ventilation mechanisms: 1) ventilation driven by winds across the cave entrances, and 2) ventilation driven by density differences between atmospheric and cave air. The degree and type of ventilation strongly influence the 222Rn and CO2 of cave air, which in turn affects the timing and extent of calcite deposition in speleothems. The degree of ventilation is estimated using a cave air CO2-δ13CO2 Keeling Plot, or a simple radon deficiency model. Results show cave air has an atmospheric component ranging from 10-90%. During fall and winter, average CO2 (700 ppmv) and 222Rn (50-100 dpm/L) are lower than in spring and summer (CO2 = 1200 ppmv; 222Rn = 1000 dpm/L) due to increased winter ventilation. Decreased ventilation during the summer allows CO2 and 222Rn levels to rise. Winter daily ventilation is primarily a function of density gradients between cave air and atmospheric air, while summer daily ventilation is primarily a function of late morning NW-NE winds above the cave. Stable isotope analyses of drip water (fracture drip and pore flow drip) and aquifer water from Hollow Ridge agree with previous isotope studies of drip water at Florida Caverns State Park, 2 km to the NE. During summer, isotopic composition of pore flow drip water (δ18O -3.8 to -4.0 per mil; δD -17.3 to -20.2 per mil VSMOW) and aquifer water (δ18O -4.0 per mil; δD -18.0 to -21.1 per mil) are similar to average annual weighted isotopic composition of precipitation (δ18O -3.6 per mil) while fracture drip waters (δ18O -3 to -3.4 per mil; δD -11.9 to -14.3 per mil) likely reflect the isotopic composition of individual precipitation events. Pore flow drip waters δ18O are weakly correlated with drip rates

Geophysical exploration in vicinity of the Unicorn Cave, South Harz Mountains, Germany

Science.gov (United States)

Kaufmann, Georg; Romanov, Douchko; Nielbock, Ralf

2010-05-01

The Unicorn Cave in the southern Harz Mountains in Germany is located in an outcrop of dolomite from the Zechstein formation, which is underlain by Grauwacke rocks. The cave, about 600 meters long, consists of several large chambers, which are connected by a gallery following the main fault alignments in E/W, NE/SW, and NW/SE direction. The overburden of the cave is shallow, between 10 and 30 m. We have used this cave site to perform a sensitivity test for both gravimetric and geoelectic methods above the cave. Additionally, geoelectic mapping has been used to assess the thickness of the cave sediments in one of the chambers. Our results show a clear signal in the Bouguer anomaly, which can only be explained by a combined model of the void space and the sediment filling. Geoelectric results are less clear, but support the gravimetry.

Minerals cave, Volcan Irazu, Costa Rica: description, mineralogy and origin

International Nuclear Information System (INIS)

Ulloa, Andres; Campos-Fernandez, Cristian S.; Rojas, Leonardo

2013-01-01

Two caves are found in the NW sector of the main crater of the Volcan Irazu at the base of the crown of a glide. The caves are located in an area of structural weakness of the massif developed in sequences of pyroclasts with hydrothermal alteration. Several explorations are organized for the recognition of the caves. The purpose has been of collecting samples and photographs for mineralogical and topographic analyses, through X-ray diffractometry. The minerals present in the samples are compared and identified by means of PDF-2 power x-ray diffraction database of the 2007 ICDD, International Center for Diffraction Data. The origin of the caves has been studied, and it is suggested to carry out other of complement studies [es

Isotopic investigations of the waters from the Movile Cave - Mangalia area

International Nuclear Information System (INIS)

Feurdean, Lucia; Feurdean, Victor

2001-01-01

As a conservative tracer in carbonate rocks deuterium was used to determine the unelucidated problems of water origin in the Movile Cave-Mangalia, which is the unique ecosystem from the world based on chemoautotrophic conditions. According to the δD values the water from Movile Cave is meteoric in origin but can not originate from local site. The groundwater from neighboring area of cave has their recharge area at high altitude and considerable distance. δD values of water samples present time variations with a distinct seasonal effect. The seasonal δD values are shifted with a half meteoric cycle vs. normal succession of seasonal maximum and minimum values. Water seems to be originated from the Prebalkan Plateau situated in the south of Dobrogea. The study indicates that the intrusion of water in the karst occurs by conduit flow and hydrostatic pressure. The geometry of conduit controls the movement of the water. The cave and the Karaoban Lake is the discharge area of two main components of groundwater: the first is coming from southwest and has isotope characteristic similar to lower altitude water (500 m) and the second is moving from southeast and has the isotope composition similar to high altitude water (>1000 m). The Movile Cave and Karaoban Lake are connected and the cave water is discharged by overflow mechanism isolating the cave from atmosphere. (authors)

Speleogenesis, geometry, and topology of caves: A quantitative study of 3D karst conduits

Science.gov (United States)

Jouves, Johan; Viseur, Sophie; Arfib, Bruno; Baudement, Cécile; Camus, Hubert; Collon, Pauline; Guglielmi, Yves

2017-12-01

Karst systems are hierarchically spatially organized three-dimensional (3D) networks of conduits behaving as drains for groundwater flow. Recently, geostatistical approaches proposed to generate karst networks from data and parameters stemming from analogous observed karst features. Other studies have qualitatively highlighted relationships between speleogenetic processes and cave patterns. However, few studies have been performed to quantitatively define these relationships. This paper reports a quantitative study of cave geometries and topologies that takes the underlying speleogenetic processes into account. In order to study the spatial organization of caves, a 3D numerical database was built from 26 caves, corresponding to 621 km of cumulative cave passages representative of the variety of karst network patterns. The database includes 3D speleological surveys for which the speleogenetic context is known, allowing the polygenic karst networks to be divided into 48 monogenic cave samples and classified into four cave patterns: vadose branchwork (VB), water-table cave (WTC), looping cave (LC), and angular maze (AM). Eight morphometric cave descriptors were calculated, four geometrical parameters (width-height ratio, tortuosity, curvature, and vertical index) and four topological ones (degree of node connectivity, α and γ graph indices, and ramification index) respectively. The results were validated by statistical analyses (Kruskal-Wallis test and PCA). The VB patterns are clearly distinct from AM ones and from a third group including WTC and LC. A quantitative database of cave morphology characteristics is provided, depending on their speleogenetic processes. These characteristics can be used to constrain and/or validate 3D geostatistical simulations. This study shows how important it is to relate the geometry and connectivity of cave networks to recharge and flow processes. Conversely, the approach developed here provides proxies to estimate the evolution of

Identification of Martian Cave Skylights Using the Temperature Change During Day and Night

Directory of Open Access Journals (Sweden)

Jongil Jung

2014-06-01

Full Text Available Recently, cave candidates have been discovered on other planets besides the Earth, such as the Moon and Mars. When we go to other planets, caves could be possible human habitats providing natural protection from cosmic threats. In this study, seven cave candidates have been found on Pavonis Mons and Ascraeus Mons in Tharsis Montes on Mars. The cave candidates were selected using the images of the Context Camera (CTX on the Mars Reconnaissance Orbiter (MRO. The Context Camera could provide images with the high resolution of 6 meter per pixel. The diameter of the candidates ranges from 50 to 100m. Cushing et al. (2007 have analyzed the temperature change at daytime and nighttime using the Thermal Emission Imaging System (THEMIS for the sites of potential cave candidates. Similarly, we have examined the temperature change at daytime and at nighttime for seven cave candidates using the method of Cushing et al. (2007. Among those, only one candidate showed a distinct temperature change. However, we cannot verify a cave based on the temperature change only and further study is required for the improvement of this method to identify caves more clearly.

Identification of Martian Cave Skylights Using the Temperature Change During Day and Night

Science.gov (United States)

Jung, Jongil; Yi, Yu; Kim, Eojin

2014-06-01

Recently, cave candidates have been discovered on other planets besides the Earth, such as the Moon and Mars. When we go to other planets, caves could be possible human habitats providing natural protection from cosmic threats. In this study, seven cave candidates have been found on Pavonis Mons and Ascraeus Mons in Tharsis Montes on Mars. The cave candidates were selected using the images of the Context Camera (CTX) on the Mars Reconnaissance Orbiter (MRO). The Context Camera could provide images with the high resolution of 6 meter per pixel. The diameter of the candidates ranges from 50 to 100m. Cushing et al. (2007) have analyzed the temperature change at daytime and nighttime using the Thermal Emission Imaging System (THEMIS) for the sites of potential cave candidates. Similarly, we have examined the temperature change at daytime and at nighttime for seven cave candidates using the method of Cushing et al. (2007). Among those, only one candidate showed a distinct temperature change. However, we cannot verify a cave based on the temperature change only and further study is required for the improvement of this method to identify caves more clearly.

Profiling bacterial diversity in a limestone cave of the western Loess Plateau of China

Directory of Open Access Journals (Sweden)

Yucheng eWu

2015-03-01

Full Text Available Bacteria and archaea sustain subsurface cave ecosystems by dominating primary production and fueling biogeochemical cyclings, despite the permanent darkness and shortage of nutrients. However, the heterogeneity and underlying mechanism of microbial diversity in caves, in particular those well connect to surface environment are largely unexplored. In this study, we examined the bacterial abundance and composition in Jinjia Cave, a small and shallow limestone cave located on the western Loess Plateau of China, by enumerating and pyrosequencing small subunit (SSU rRNA genes. The results clearly reveal the contrasting bacterial community compositions in relation to cave habitat types, i.e., rock wall deposit, aquatic sediment and sinkhole soil, which are differentially connected to the surface environment. The deposits on the cave walls were dominated by putative cave-specific bacterial lineages within the -Proteobacteria or Actinobacteria that are routinely found on cave rocks around the world. In addition, sequence identity with known functional groups suggests enrichments of chemolithotrophic bacteria potentially involved in autotrophic C fixation and inorganic N transformation on rock surfaces. By contrast, bacterial communities in aquatic sediments were more closely related to those in the overlying soils. This is consistent with the similarity in elemental composition between the cave sediment and the overlying soil, implicating the influence of mineral chemistry on cave microhabitat and bacterial composition. These findings provide compelling molecular evidence of the bacterial community heterogeneity in an East Asian cave, which might be controlled by both subsurface and surface environments.

Some deep caves in Biokovo Mountain (Croatia)

Science.gov (United States)

Garasic, Mladen; Garasic, Davor

2014-05-01

The investigation of 3 caves explored more than 1000 meters in depth in the Dinaric karst area in Croatia, has been in progress for a considerable period of time. These are complex speleological features situated in the longest mountain range of the Dinaric karst, i.e. at the Northern Velebit mountain range. In fact, these caves have been studied for over two decades now. The first one is a cave system of Lukina jama (Luke's Cave) - Trojama cave, which has been investigated until the depth of 1421 meters (Jalžić, 2007; Šmida, 1993). Its total length is 3731 meters and a new expedition will soon continue to investigate this pit through speleodiving in siphons. The second greatest cave by depth is Slovačka jama (Slovak Cave), 1320 meters in depth, with cave chanals measuring 5677 meters in total length. The third greatest cave by depth is the Cave system of Velebita, reaching down to 1026 m in depth, with the chanal length of 3176 meters (Bakšić, 2006a; 2006b). However, another 3 speleological sites, which can rightly be added to those deeper than 1000 m, have recently been discovered. These are three caverns that were discovered during construction of the Sveti Ilija Tunnel that passes through Mt. Biokovo, in the Dinaric karst area. These caverns undoubtedly point to the link with the ground surface, while the rock overburden above the tunnel in the zone where the caverns were discovered ranges from 1250 and 1350 meters. Bats from the ground surface were found in the caverns and, according to measurements, they are situated in the depth from 200 and 300 meters below the tunnel level. This would mean that the depth of these newly found caves ranges from 1450 and 1650 m, when observed from the ground surface. There are several hundreds of known caves in Biokovo, and the deepest ones discovered so far are Jama Mokre noge (Wet Feet Cave) 831 m in depth, and Jama Amfora (Amphora Cave) 788 m in depth (Bockovac, 1999; Bakšić & all, 2002; Lacković & all, 2001

Mediterranean Recluse Spider, Loxosceles rufescens (Araneae: Sicariidae from Charkhab Cave, Southern Iran

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Saber Sadeghi

2017-04-01

Full Text Available Background: The best-known dangerous spiders belong to the six genera. The genus Loxosceles or violin spiders are well known for their ability to cause skin necrosis or loxoscelism. All Loxosceles species have medical im­portance due to their necrotizing venom. The present article reports the occurrence of L. rufescens in Charkhab Cave, south of Iran (Larestan.Methods: The specimens were collected from the Charkhab Cave using handling forceps, paintbrush and aspirator and preserved in 96% ethanol.Results: Loxosceles rufescens, a medically important spider, is recorded from Charkhab Cave in Fars Province (southwest of Iran. Identification of L. rufescens was performed based on external morphology and the features of male genitalia.Conclusion: Presence of L. rufescens in south of Iran especially in a cave confirmed that this species is a widely distributed species in Iran. Therefore, cavers or cave visitors should be aware of this poisonous spider in caves.

Environmental drivers of phototrophic biofilms in an Alpine show cave (SW-Italian Alps)

International Nuclear Information System (INIS)

Piano, E.; Bona, F.; Falasco, E.; La Morgia, V.; Badino, G.; Isaia, M.

2015-01-01

The proliferation of lampenflora is a major threat for the conservation of show caves, since phototrophic organisms cause physical, chemical and aesthetic damage to speleothems. In this paper we examine the environmental factors influencing the presence and the growth of the three main photosynthetic groups composing phototrophic biofilms in the Bossea show cave (SW-Italian Alps). The presence and the primary production of cyanobacteria, diatoms and green algae were detected with BenthoTorch®, an instrument for in situ measurement of chlorophyll a concentration that has never been used before in caves. By means of different techniques of regression analysis, we highlighted the response of the three photosynthetic groups to different environmental factors. Illuminance proved to be the main factor influencing positively both the probability of the presence and the productivity of the three groups. The presence of seeping water on the substrate and the distance from the cave entrance proved to play an important role in determining patterns of colonization. By means of GIS techniques, we provide thematic maps of the cave, providing a representation of pattern of the density of the three examined photosynthetic groups within different areas of the cave. The same approach may apply to other show caves, aiming at providing suggestions for the cave management (i.e. cleaning of the cave walls and positioning of artificial lights) and reduce impact caused by tourism. - Highlights: • We used a PAM fluorimeter on autotrophic biofilms in a show cave for the first time. • We modelled the environmental factors influencing phototrophic biofilms. • Illuminance, moisture and distance from the entrance proved to be significant. • We produced thematic maps illustrating our results. • We provide suggestions for cave management

Environmental drivers of phototrophic biofilms in an Alpine show cave (SW-Italian Alps)

Energy Technology Data Exchange (ETDEWEB)

Piano, E., E-mail: elena.piano@unito.it [Department of Life Sciences and Systems Biology, University of Turin, Via Accademia Albertina 13, 10123 Turin (Italy); Bona, F.; Falasco, E. [Department of Life Sciences and Systems Biology, University of Turin, Via Accademia Albertina 13, 10123 Turin (Italy); La Morgia, V. [ISPRA, via Ca' Fornacetta, 9, 40064 Ozzano dell' Emilia (Italy); Badino, G. [Department of Physics, University of Turin, Via P. Giuria 1, 10125 Turin (Italy); Isaia, M. [Department of Life Sciences and Systems Biology, University of Turin, Via Accademia Albertina 13, 10123 Turin (Italy)

2015-12-01

The proliferation of lampenflora is a major threat for the conservation of show caves, since phototrophic organisms cause physical, chemical and aesthetic damage to speleothems. In this paper we examine the environmental factors influencing the presence and the growth of the three main photosynthetic groups composing phototrophic biofilms in the Bossea show cave (SW-Italian Alps). The presence and the primary production of cyanobacteria, diatoms and green algae were detected with BenthoTorch®, an instrument for in situ measurement of chlorophyll a concentration that has never been used before in caves. By means of different techniques of regression analysis, we highlighted the response of the three photosynthetic groups to different environmental factors. Illuminance proved to be the main factor influencing positively both the probability of the presence and the productivity of the three groups. The presence of seeping water on the substrate and the distance from the cave entrance proved to play an important role in determining patterns of colonization. By means of GIS techniques, we provide thematic maps of the cave, providing a representation of pattern of the density of the three examined photosynthetic groups within different areas of the cave. The same approach may apply to other show caves, aiming at providing suggestions for the cave management (i.e. cleaning of the cave walls and positioning of artificial lights) and reduce impact caused by tourism. - Highlights: • We used a PAM fluorimeter on autotrophic biofilms in a show cave for the first time. • We modelled the environmental factors influencing phototrophic biofilms. • Illuminance, moisture and distance from the entrance proved to be significant. • We produced thematic maps illustrating our results. • We provide suggestions for cave management.

Hurricane Impact on Seepage Water in Larga Cave, Puerto Rico

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Vieten, Rolf; Warken, Sophie; Winter, Amos; Schröder-Ritzrau, Andrea; Scholz, Denis; Spötl, Christoph

2018-03-01

Hurricane-induced rainfall over Puerto Rico has characteristic δ18O values which are more negative than local rainfall events. Thus, hurricanes may be recorded in speleothems from Larga cave, Puerto Rico, as characteristic oxygen isotope excursions. Samples of 84 local rainfall events between 2012 and 2013 ranged from -6.2 to +0.3‰, whereas nine rainfall samples belonging to a rainband of hurricane Isaac (23-24 August 2012) ranged from -11.8 to -7.1‰. Cave monitoring covered the hurricane season of 2014 and investigated the impact of hurricane rainfall on drip water chemistry. δ18O values were measured in cumulative monthly rainwater samples above the cave. Inside the cave, δ18O values of instantaneous drip water samples were analyzed and drip rates were recorded at six drip sites. Most effective recharge appears to occur during the wet months (April-May and August-November). δ18O values of instantaneous drip water samples ranged from -3.5 to -2.4‰. In April 2014 and April 2015 some drip sites showed more negative δ18O values than the effective rainfall (-2.9‰), implying an influence of hurricane rainfall reaching the cave via stratified seepage flow months to years after the event. Speleothems from these drip sites in Larga cave have a high potential for paleotempestology studies.

Theoretic derivation of directed acyclic subgraph algorithm and comparisons with message passing algorithm

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Ha, Jeongmok; Jeong, Hong

2016-07-01

This study investigates the directed acyclic subgraph (DAS) algorithm, which is used to solve discrete labeling problems much more rapidly than other Markov-random-field-based inference methods but at a competitive accuracy. However, the mechanism by which the DAS algorithm simultaneously achieves competitive accuracy and fast execution speed, has not been elucidated by a theoretical derivation. We analyze the DAS algorithm by comparing it with a message passing algorithm. Graphical models, inference methods, and energy-minimization frameworks are compared between DAS and message passing algorithms. Moreover, the performances of DAS and other message passing methods [sum-product belief propagation (BP), max-product BP, and tree-reweighted message passing] are experimentally compared.

Insectivorous bat reproduction and human cave visitation in Cambodia: A perfect conservation storm?

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Lim, Thona; Cappelle, Julien; Hoem, Thavry; Furey, Neil

2018-01-01

Cave roosting bats represent an important component of Southeast Asian bat diversity and are vulnerable to human disturbance during critical reproductive periods (pregnancy, lactation and weaning). Because dramatic growth of cave tourism in recent decades has raised concerns about impacts on cave bats in the region, we assessed the reproductive phenology of two insectivorous species (Hipposideros larvatus sensu lato and Taphozous melanopogon) at three caves in Cambodia for 23 months in 2014-2016 and evaluated human visitation to these sites between 2007 and 2014. Despite the differing foraging strategies employed by the two taxa, the temporal consistency observed in proportions of pregnant, lactating and juvenile bats indicates that their major birth peaks coincide with the time of greatest cave visitation annually, particularly for domestic visitors and namely during the Cambodian new year in April. They also reflect rainfall patterns and correspond with the reproductive phenology of insectivorous cave bats in Vietnam. These findings were predictable because 1) insect biomass and thus food availability for insectivorous bats are optimal for ensuring survival of young following this period, and 2) the Khmer new year is the most significant month for religious ceremonies and thus domestic cave visitation nationally, due to the abundance of Buddhist shrines and temples in Cambodian caves. While the impact of visitor disturbance on bat population recruitment cannot be empirically assessed due to lack of historical data, it is nonetheless likely to have been considerable and raises a conservation concern. Further, because growing evidence suggests that insectivorous cave bats exhibit reproductive synchrony across continental Southeast Asia where countless cave shrines are heavily frequented during April in Theravada Buddhist countries (e.g., Myanmar, Thailand, Cambodia and Laos), our results may have wider applicability in the region. We consequently advocate for

Insectivorous bat reproduction and human cave visitation in Cambodia: A perfect conservation storm?

Directory of Open Access Journals (Sweden)

Thona Lim

Full Text Available Cave roosting bats represent an important component of Southeast Asian bat diversity and are vulnerable to human disturbance during critical reproductive periods (pregnancy, lactation and weaning. Because dramatic growth of cave tourism in recent decades has raised concerns about impacts on cave bats in the region, we assessed the reproductive phenology of two insectivorous species (Hipposideros larvatus sensu lato and Taphozous melanopogon at three caves in Cambodia for 23 months in 2014-2016 and evaluated human visitation to these sites between 2007 and 2014. Despite the differing foraging strategies employed by the two taxa, the temporal consistency observed in proportions of pregnant, lactating and juvenile bats indicates that their major birth peaks coincide with the time of greatest cave visitation annually, particularly for domestic visitors and namely during the Cambodian new year in April. They also reflect rainfall patterns and correspond with the reproductive phenology of insectivorous cave bats in Vietnam. These findings were predictable because 1 insect biomass and thus food availability for insectivorous bats are optimal for ensuring survival of young following this period, and 2 the Khmer new year is the most significant month for religious ceremonies and thus domestic cave visitation nationally, due to the abundance of Buddhist shrines and temples in Cambodian caves. While the impact of visitor disturbance on bat population recruitment cannot be empirically assessed due to lack of historical data, it is nonetheless likely to have been considerable and raises a conservation concern. Further, because growing evidence suggests that insectivorous cave bats exhibit reproductive synchrony across continental Southeast Asia where countless cave shrines are heavily frequented during April in Theravada Buddhist countries (e.g., Myanmar, Thailand, Cambodia and Laos, our results may have wider applicability in the region. We consequently

Insectivorous bat reproduction and human cave visitation in Cambodia: A perfect conservation storm?

Science.gov (United States)

Cappelle, Julien; Hoem, Thavry

2018-01-01

Cave roosting bats represent an important component of Southeast Asian bat diversity and are vulnerable to human disturbance during critical reproductive periods (pregnancy, lactation and weaning). Because dramatic growth of cave tourism in recent decades has raised concerns about impacts on cave bats in the region, we assessed the reproductive phenology of two insectivorous species (Hipposideros larvatus sensu lato and Taphozous melanopogon) at three caves in Cambodia for 23 months in 2014–2016 and evaluated human visitation to these sites between 2007 and 2014. Despite the differing foraging strategies employed by the two taxa, the temporal consistency observed in proportions of pregnant, lactating and juvenile bats indicates that their major birth peaks coincide with the time of greatest cave visitation annually, particularly for domestic visitors and namely during the Cambodian new year in April. They also reflect rainfall patterns and correspond with the reproductive phenology of insectivorous cave bats in Vietnam. These findings were predictable because 1) insect biomass and thus food availability for insectivorous bats are optimal for ensuring survival of young following this period, and 2) the Khmer new year is the most significant month for religious ceremonies and thus domestic cave visitation nationally, due to the abundance of Buddhist shrines and temples in Cambodian caves. While the impact of visitor disturbance on bat population recruitment cannot be empirically assessed due to lack of historical data, it is nonetheless likely to have been considerable and raises a conservation concern. Further, because growing evidence suggests that insectivorous cave bats exhibit reproductive synchrony across continental Southeast Asia where countless cave shrines are heavily frequented during April in Theravada Buddhist countries (e.g., Myanmar, Thailand, Cambodia and Laos), our results may have wider applicability in the region. We consequently advocate for

A conservation status index, as an auxiliary tool for the management of cave environments

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Christiane Ramos Donato

2014-09-01

Full Text Available The conservation of the Speleological Heritage involves bioecological, geomorphological and anthropogenic studies, both from inside the caves and from the external environments that surround them. This study presents a method to rank caves according to their priority for conservation and restoration. Nine caves were evaluated: indicators related to the environmental impacts and the vulnerability status presented by those caves (intrinsic features and the values scored in a ‘Cave Conservation Index’ (CCI were established. We also used a rapid assessment protocol to measure cave vulnerability for prioritization of conservation/restoration actions (RAP-cr comparing natural cavities with the same lithology, due to “strictu sensu” peculiarities. Based on the protocols applied in caves of the municipality of Laranjeiras, Sergipe, Northeastern Brazil, we concluded that the present method attended to the needs for the classification of the caves into categories of conservation/restoration status, using little time and financial effort, through rapid diagnostics that facilitate the comparisons. In this perspective, the CCI can be used to indicate areas that should be protected and caves that should be prioritized to have initiated activities of conservation and restoration.

U-series dating of Paleolithic art in 11 caves in Spain.

Science.gov (United States)

Pike, A W G; Hoffmann, D L; García-Diez, M; Pettitt, P B; Alcolea, J; De Balbín, R; González-Sainz, C; de las Heras, C; Lasheras, J A; Montes, R; Zilhão, J

2012-06-15

Paleolithic cave art is an exceptional archive of early human symbolic behavior, but because obtaining reliable dates has been difficult, its chronology is still poorly understood after more than a century of study. We present uranium-series disequilibrium dates of calcite deposits overlying or underlying art found in 11 caves, including the United Nations Educational, Scientific, and Cultural Organization (UNESCO) World Heritage sites of Altamira, El Castillo, and Tito Bustillo, Spain. The results demonstrate that the tradition of decorating caves extends back at least to the Early Aurignacian period, with minimum ages of 40.8 thousand years for a red disk, 37.3 thousand years for a hand stencil, and 35.6 thousand years for a claviform-like symbol. These minimum ages reveal either that cave art was a part of the cultural repertoire of the first anatomically modern humans in Europe or that perhaps Neandertals also engaged in painting caves.

Ancient photosynthetic eukaryote biofilms in an Atacama Desert coastal cave

Science.gov (United States)

Azua-Bustos, A.; Gonzalez-Silva, C.; Mancilla, R.A.; Salas, L.; Palma, R.E.; Wynne, J.J.; McKay, C.P.; Vicuna, R.

2009-01-01

Caves offer a stable and protected environment from harsh and changing outside prevailing conditions. Hence, they represent an interesting habitat for studying life in extreme environments. Here, we report the presence of a member of the ancient eukaryote red algae Cyanidium group in a coastal cave of the hyperarid Atacama Desert. This microorganism was found to form a seemingly monospecific biofilm growing under extremely low photon flux levels. Our work suggests that this species, Cyanidium sp. Atacama, is a new member of a recently proposed novel monophyletic lineage of mesophilic "cave" Cyanidium sp., distinct from the remaining three other lineages which are all thermo-acidophilic. The cave described in this work may represent an evolutionary island for life in the midst of the Atacama Desert. ?? Springer Science + Business Media, LLC 2009.

Simultaneous caving and surface restoration system for oil shale mining

Energy Technology Data Exchange (ETDEWEB)

Allsman, P.T.

1968-10-01

A modified caving method is introduced for mining oil shale and simultaneous restoration of the land surface by return of spent shale onto the subsided area. Other methods have been designed to mine the relatively thin richer beds occurring near outcrops in the Piceance Creek Basin of NW. Colorado. Since the discovery of the much thicker beds in the N.-central part of the basin, some attention has focused on in situ and open-pit methods of recovery. Although caving has been recognized as a possible means of mining shale, most people have been skeptical of its success. This stems from the unknown and salient factors of cavability and size of broken rock with caving. Wisdom would seem to dictate that serious evaluation of the caving method be made along with the other methods.

Near Surface Geophysical Methods Applied to the Rising Star Cave System

Science.gov (United States)

Webb, S. J.; Naidoo, M.; Elliott, M. C.; Kruger, A.; Roberts, E.; Dirks, P.

2017-12-01

The Rising Star Cave system is located approximately 40 km northwest of Johannesburg in the Malmani dolomites (Chuniespoort group,Transvaal Supergroup). The cave system is extensive with 4 km of mapped passages and chambers. The Dinaledi chamber, host to the Homo Naledi fossils, is reached by following a tortuous route with squeezes as small as 20 cm. The chamber is located 30 m below surface and 80 m from the entrance. The enigmatic find of fossils from at least 15 individual hominins, without the presence of other species, led to the idea of deliberate burial. The present access route is difficult and it is unclear how early hominins were able to navigate it, prompting the suggestion of an undiscovered entrance. We are using near surface geophysical methods to investigate possible connections between the surface and the caves. Using a Geometrics Cs-vapor Walkmag, we collected preliminary ground magnetic intensity measurements over a region 300 m x 200 m, using 1 m station spacing and 10 m line spacing. The average magnetic variation along line is 200 nT. We also collected over 100 susceptibility measurements on outcropping lithologies, surface soil and cave sediments using a SM-30 susceptibility meter. The surface soil was one to two orders of magnitude higher than surrounding lithologies (average = 1.5 x 10-3 SI) and the cave sediment samples were slightly higher (average = 3.07 x 10-3 SI). We were able to collect GPR data (GSSI SIR-3000, 400 MHz) in selected spots on the cave floor with the goal of locating the cave floor beneath the sediments. Dolomites usually have low magnetic susceptibilities, but erosion products of the nearby magnetic Hospital Hill or Rooihoogte shales may have been transported into or onto the cave system. This is a likely cause of the magnetic anomalies and larger amplitude anomalies may indicate an accumulation of sediments, extending to depth. These anomalies will be further investigated using gravity to determine if there are

NEW LOCALITY OF CAVE BEAR (Ursus spelaeus Rosenmüller & Heinroth, 1794 IN BOSNIA AND HERZEGOVINA: MORPHO- ANATOMICAL CHARACTERISTICS OF CRANIAL SKELETON FOUND IN CAVE AT VRELO MOKRANJSKA MILJACKA

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Lada Lukić-Bilela

2013-10-01

Full Text Available During the investigation of the Cave at Vrelo Mokranjska Miljacka, the bone remains of the cave bear (Ursus spelaeus Rosenmüller & Heinroth, 1794 was found. This is the new Pleistocene fauna locality of this extinct species in Bosnia and Herzegovina. Almost complete cranial skeleton belongs to a young adult male. Analyzed morphometric proportions completely fit within the variation range of the Pleistocene cave bear populations in Bosnia and Herzegovina.Key words: Ursus spelaeus, skull, teeth, Cave of Vrelo Mokranjska Miljacka

Investigation of tracking systems properties in CAVE-type virtual reality systems

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Szymaniak, Magda; Mazikowski, Adam; Meironke, Michał

2017-08-01

In recent years, many scientific and industrial centers in the world developed a virtual reality systems or laboratories. One of the most advanced solutions are Immersive 3D Visualization Lab (I3DVL), a CAVE-type (Cave Automatic Virtual Environment) laboratory. It contains two CAVE-type installations: six-screen installation arranged in a form of a cube, and four-screen installation, a simplified version of the previous one. The user feeling of "immersion" and interaction with virtual world depend on many factors, in particular on the accuracy of the tracking system of the user. In this paper properties of the tracking systems applied in I3DVL was investigated. For analysis two parameters were selected: the accuracy of the tracking system and the range of detection of markers by the tracking system in space of the CAVE. Measurements of system accuracy were performed for six-screen installation, equipped with four tracking cameras for three axes: X, Y, Z. Rotation around the Y axis was also analyzed. Measured tracking system shows good linear and rotating accuracy. The biggest issue was the range of the monitoring of markers inside the CAVE. It turned out, that the tracking system lose sight of the markers in the corners of the installation. For comparison, for a simplified version of CAVE (four-screen installation), equipped with eight tracking cameras, this problem was not occur. Obtained results will allow for improvement of cave quality.

Generating inferences from knowledge structures based on general automata

Energy Technology Data Exchange (ETDEWEB)

Koenig, E C

1983-01-01

The author shows that the model for knowledge structures for computers based on general automata accommodates procedures for establishing inferences. Algorithms are presented which generate inferences as output of a computer when its sentence input names appropriate knowledge elements contained in an associated knowledge structure already stored in the memory of the computer. The inferences are found to have either a single graph tuple or more than one graph tuple of associated knowledge. Six algorithms pertain to a single graph tuple and a seventh pertains to more than one graph tuple of associated knowledge. A named term is either the automaton, environment, auxiliary receptor, principal receptor, auxiliary effector, or principal effector. The algorithm pertaining to more than one graph tuple requires that the input sentence names the automaton, transformation response, and environment of one of the tuples of associated knowledge in a sequence of tuples. Interaction with the computer may be either in a conversation or examination mode. The algorithms are illustrated by an example. 13 references.

Radon and thoron in cave dwellings (Yan'an, China)

International Nuclear Information System (INIS)

Wiegand, J.; Feige, S.; Xie Quingling; Schreiber, U.; Wieditz, K.; Wittmann, C.; Luo Xiarong

2000-01-01

222 Rn and 220 Rn concentrations were measured in cave dwellings and brick houses in the region of Yan'an (China) during summer 1997. The underground dwellings are built into Quaternary loess, and all investigated houses are founded on it. The median values of indoor 222 Rn and 220 Rn concentrations are 42 (n = 18) and 77Bq m -3 (n = 15) for brick houses and 92 (n = 23) and 215 (n = 17) Bq m -3 for cave dwellings. To classify the dwellings in respect to their cave-character, the fraction of walls having a direct contact to the loess is calculated for each dwelling. While the 222 Rn concentrations are increasing with higher fractions, the 220 Rn concentrations are not correlated with this fraction. On the other hand, due to the short half-life of 220 Rn the distance from the measuring point to the walls is negatively correlated with the 220 Rn concentration, while there is no correlation with the 222 Rn concentration. Therefore, concentric isolines of 220 Rn concentrations showing a strong gradient were detected in cave dwellings. An influence of the ventilation rate is distinct for 222 Rn but weak for 220 Rn. The effective dose rates for 222 Rn and 220 Rn and their progenies are calculated for brick houses (2.7 mSv y -1 ), cave dwellings (7.1 mSv y -1 ), and for traditional cave dwellings with a bed foundation built with loess (16.7 mSv y -1 ). These calculations are based on summer measurements only. It is expected that the true effective dose rates will be significantly higher

Efficient Exact Inference With Loss Augmented Objective in Structured Learning.

Science.gov (United States)

Bauer, Alexander; Nakajima, Shinichi; Muller, Klaus-Robert

2016-08-19

Structural support vector machine (SVM) is an elegant approach for building complex and accurate models with structured outputs. However, its applicability relies on the availability of efficient inference algorithms--the state-of-the-art training algorithms repeatedly perform inference to compute a subgradient or to find the most violating configuration. In this paper, we propose an exact inference algorithm for maximizing nondecomposable objectives due to special type of a high-order potential having a decomposable internal structure. As an important application, our method covers the loss augmented inference, which enables the slack and margin scaling formulations of structural SVM with a variety of dissimilarity measures, e.g., Hamming loss, precision and recall, Fβ-loss, intersection over union, and many other functions that can be efficiently computed from the contingency table. We demonstrate the advantages of our approach in natural language parsing and sequence segmentation applications.

Measurements of seasonal and daily radon daughter concentration fluctuations in National Park Service caves

International Nuclear Information System (INIS)

Yarborough, K.A.

1977-01-01

The National Park Service (NPS) is studying levels of airborne alpha radiation from radon and thoron in all NPS administered caves in which tours for visitors are regularly conducted. The NPS research has the dual but complementary objectives of safeguarding health at the NPS administered caves, and to develop data on alpha radiation levels and on natural airflows in NPS caves. The results reported here for NPS caves describe concepts hypothesized for the objectives. In addition the data can be used by various agencies to clarify health standards for exposures to low airborne alpha radiation levels in cave environments. These results show daily and seasonal trends and the influence of natural ventilation by air circulation for each cave investigated

Type Inference for Session Types in the Pi-Calculus

DEFF Research Database (Denmark)

Graversen, Eva Fajstrup; Harbo, Jacob Buchreitz; Huttel, Hans

2014-01-01

In this paper we present a direct algorithm for session type inference for the π-calculus. Type inference for session types has previously been achieved by either imposing limitations and restriction on the π-calculus, or by reducing the type inference problem to that for linear types. Our approach...

Cure from the cave: volcanic cave actinomycetes and their potential in drug discovery

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Cheeptham N.

2013-01-01

Full Text Available Volcanic caves have been little studied for their potential as sources of novel microbial species and bioactive compounds with new scaffolds. We present the f irst study of volcanic cave microbiology from Canada and suggest that this habitat has great potential for the isolation of novel bioactive substances. Sample locat ions were plot ted on a contour map that was compiled in ArcView 3.2. Over 400 bacterial isolates were obtained from the Helmcken Falls cave in Wells Gray Provincial Park, British Columbia. From our preliminary screen, of 400 isolates tested, 1% showed activity against extended spectrum ß-lactamase E. coli, 1.75% against Escherichia coli, 2.25% against Acinetobacter baumannii, and 26.50% against Klebsiella pneumoniae. In addition, 10.25% showed activity against Micrococcus luteus, 2% against methicillin resistant Staphylococcus aureus, 9.25% against Mycobacterium smegmatis, 6.25% Pseudomonas aeruginosa and 7.5% against Candida albicans. Chemical and physical characteristics of three rock wall samples were studied using scanning electron microscopy and f lame atomic absorption spectrometry. Calcium (Ca, iron (Fe, and aluminum (Al were the most abundant components while magnesium (Mg, sodium (Na, arsenic (As, lead (Pb, chromium (Cr, and barium (Ba were second most abundant with cadmium (Cd and potassium (K were the least abundant in our samples. Scanning electron microscopy (SEM showed the presence of microscopic life forms in all three rock wall samples. 16S rRNA gene sequencing of 82 isolates revealed that 65 (79.3% of the strains belong to the Streptomyces genus and 5 (6.1% were members of Bacillus, Pseudomonas, Nocardia and Erwinia genera. Interestingly, twelve (14.6% of the 16S rRNA sequences showed similarity to unidentif ied ribosomal RNA sequences in the library databases, the sequences of these isolates need to be further investigated using the EzTaxon-e database (http://eztaxon-e. ezbiocloud.net/ to determine whether

Inferring microRNA regulation of mRNA with partially ordered samples of paired expression data and exogenous prediction algorithms.

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Brian Godsey

Full Text Available MicroRNAs (miRs are known to play an important role in mRNA regulation, often by binding to complementary sequences in "target" mRNAs. Recently, several methods have been developed by which existing sequence-based target predictions can be combined with miR and mRNA expression data to infer true miR-mRNA targeting relationships. It has been shown that the combination of these two approaches gives more reliable results than either by itself. While a few such algorithms give excellent results, none fully addresses expression data sets with a natural ordering of the samples. If the samples in an experiment can be ordered or partially ordered by their expected similarity to one another, such as for time-series or studies of development processes, stages, or types, (e.g. cell type, disease, growth, aging, there are unique opportunities to infer miR-mRNA interactions that may be specific to the underlying processes, and existing methods do not exploit this. We propose an algorithm which specifically addresses [partially] ordered expression data and takes advantage of sample similarities based on the ordering structure. This is done within a Bayesian framework which specifies posterior distributions and therefore statistical significance for each model parameter and latent variable. We apply our model to a previously published expression data set of paired miR and mRNA arrays in five partially ordered conditions, with biological replicates, related to multiple myeloma, and we show how considering potential orderings can improve the inference of miR-mRNA interactions, as measured by existing knowledge about the involved transcripts.

An absolutely dated high-resolution stalagmite record from Lianhua Cave in central China: Climate forcing and comparison with Wanxiang Cave and Dongge Cave records over the past 2000 years

Science.gov (United States)

Li, Hong-Chun; Yin, Jian-Jun; Shen, Chuan-Chou; Mii, Horng-Sheng; Li, Ting-Yong

2015-04-01

A 33-cm long aragonite stalagmite (LHD-1) from Lianhua Cave has been dated by MC-ICPMS 230Th/U method on 41 horizons. Very high U contents (1~6ppm) and low Th contents yield excellent 230Th/U dates which provide reliable chronology of the stalagmite on sub-decadal time scale over the past 3350 years. A total of 1716 samples have been measured for δ18O and δ13C, spanning annual resolution over the past 1820 years. The stalagmite δ18O is not only influenced by the 'amount effect', but also affected by the moisture source. Enhanced the tropical monsoon trough under strong EASM brings higher spring quarter rainfall with isotopically light monsoonal moisture in the cave site, resulting in lighter stalagmite δ18O. On decadal or longer time scales, increased solar activity produces warmer condition and stronger summer monsoon which lead to wet climates. On interannual-to-decadal scales, the Walker Circulation under El Niño conditions during cold periods will shift toward the central Pacific and result in weakening of EASM. Under such a circumstance, dry climates will be prevailed in the study area. Based on the δ18O and δ13C records, we have deciphered climatic and vegetation changes of the study area in decadal scales. The highly precise dated LHD-1 record has been compared with previous published Wanxiang Cave and Dongge Cave records. Although some similarities can be found, there are major discrepancies among the three well-dated records, especially during AD 500-700 and AD 1300-1600. In additional, the major weak monsoon periods defined in the Wanxiang Cave record during late Tang Dynasty, late Yuan Dynasty and late Ming Dynasty are not supported by the LHD-1 record. The heaviest δ18O peaks (more than five continuous heavy values) over the past 2000 years appeared around AD 1990-2003, 1657-1662, 1220-1228, 663-669, 363-370, and 1082-1090 (in the order of heavy to light). None of these periods occurred Chinese dynasty collapse.

Observations on the Cave-Associated Beetles (Coleoptera of Nova Scotia, Canada

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Moseley M.

2009-07-01

Full Text Available The cave-associated invertebrates of Nova Scotia constitute a fauna at a very early stage of post-glacial recolonization. TheColeoptera are characterized by low species diversity. A staphylinid Quedius spelaeus spelaeus, a predator, is the only regularlyencountered beetle. Ten other terrestrial species registered from cave environments in the province are collected infrequently. Theyinclude three other rove-beetles: Brathinus nitidus, Gennadota canadensis and Atheta annexa. The latter two together with Catopsgratiosus (Leiodidae constitute a small group of cave-associated beetles found in decompositional situations. Quedius s. spelaeusand a small suite of other guanophiles live in accumulations of porcupine dung: Agolinus leopardus (Scarabaeidae, Corticariaserrata (Latrididae, and Acrotrichis castanea (Ptilidae. Two adventive weevils Otiorhynchus ligneus and Barypeithes pellucidus(Curculionidae collected in shallow cave passages are seasonal transients; Dermestes lardarius (Dermestidae, recorded fromone cave, was probably an accidental (stray. Five of the terrestrial beetles are adventive Palaearctic species. Aquatic beetles arecollected infrequently. Four taxa have been recorded: Agabus larsoni (Dytiscidae may be habitual in regional caves; another Agabussp. (probably semivittatus, Dytiscus sp. (Dytiscidae, and Crenitis digesta (Hydrophilidae are accidentals. The distribution andecology of recorded species are discussed, and attention is drawn to the association of beetles found in a Nova Scotia “ice cave”.

Studies of condensation/evaporation processes in the Glowworm Cave, New Zealand

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de Freitas Chris R.

2006-07-01

Full Text Available The condensation/evaporation process is important in caves, especially in tourist caves where there is carbon dioxide enriched air caused by visitors. The cycle of condensation and evaporation of condensate is believed to enhance condensation corrosion. The problem is condensation is difficult to measure. This study addresses the problem and reports on a method for measuring and modelling condensation rates in a limestone cave. Electronic sensors for measuring condensation and evaporation of the condensate as part of a single continuous process of water vapour flux are tested and used to collect 12 months of data. The study site is the Glowworm tourist cave in New Zealand. The work describes an explanatory model of processes leading to condensation using data based on measurements of condensation and evaporation as part of a single continuous process of water vapour flux. The results show that the model works well. However, one of the most important messages from the research reported here is the introduction of the condensation sensor. The results show that condensation in caves can actually be measured and monitored, virtually in real time. In conjunction with the recent developments in data logging equipment, this opens exciting perspectives in cave climate studies, and, more generally, in hydrogeological studies in karst terrains.

Chemical Ecology of Cave-Dwelling Millipedes: Defensive Secretions of the Typhloiulini (Diplopoda, Julida, Julidae).

Science.gov (United States)

Makarov, Slobodan E; Bodner, Michaela; Reineke, Doris; Vujisić, Ljubodrag V; Todosijević, Marina M; Antić, Dragan Ž; Vagalinski, Boyan; Lučić, Luka R; Mitić, Bojan M; Mitov, Plamen; Anđelković, Boban D; Lucić, Sofija Pavković; Vajs, Vlatka; Tomić, Vladimir T; Raspotnig, Günther

2017-04-01

Cave animals live under highly constant ecological conditions and in permanent darkness, and many evolutionary adaptations of cave-dwellers have been triggered by their specific environment. A similar "cave effect" leading to pronounced chemical interactions under such conditions may be assumed, but the chemoecology of troglobionts is mostly unknown. We investigated the defensive chemistry of a largely cave-dwelling julid group, the controversial tribe "Typhloiulini", and we included some cave-dwelling and some endogean representatives. While chemical defense in juliform diplopods is known to be highly uniform, and mainly based on methyl- and methoxy-substituted benzoquinones, the defensive secretions of typhloiulines contained ethyl-benzoquinones and related compounds. Interestingly, ethyl-benzoquinones were found in some, but not all cave-dwelling typhloiulines, and some non-cave dwellers also contained these compounds. On the other hand, ethyl-benzoquinones were not detected in troglobiont nor in endogean typhloiuline outgroups. In order to explain the taxonomic pattern of ethyl-benzoquinone occurrence, and to unravel whether a cave-effect triggered ethyl-benzoquinone evolution, we classed the "Typhloiulini" investigated here within a phylogenetic framework of julid taxa, and traced the evolutionary history of ethyl-benzoquinones in typhloiulines in relation to cave-dwelling. The results indicated a cave-independent evolution of ethyl-substituted benzoquinones, indicating the absence of a "cave effect" on the secretions of troglobiont Typhloiulini. Ethyl-benzoquinones probably evolved early in an epi- or endogean ancestor of a clade including several, but not all Typhloiulus (basically comprising a taxonomic entity known as "Typhloiulus sensu stricto") and Serboiulus. Ethyl-benzoquinones are proposed as novel and valuable chemical characters for julid systematics.

Main karst and caves of Switzerland; El karst y las cuevas mas importantes de Suiza

Energy Technology Data Exchange (ETDEWEB)

Jeannin, P. Y.

2016-07-01

This paper presents an overview of the main karst areas and cave systems in Switzerland. The first part encloses descriptions of the main geological units that hold karst and caves in the country and summarizes a brief history of research and protection of the cave environments. The second part presents three regions enclosing large cave systems. Two regions in the Alps enclose some of the largest limestone caves in Europe: Siebenhengste (Siebenhengste cave system with ∼160 km and Barenschacht with 70 km) and Bodmeren-Silberen (Holloch cave system with 200 km and Silberen System with 39 km). These systems are also among the deepest with depths ranging between 880 and 1340 m. The third example is from the Jura Mountains (northern Switzerland). (Author)

Lower complexity bounds for lifted inference

DEFF Research Database (Denmark)

Jaeger, Manfred

2015-01-01

instances of the model. Numerous approaches for such “lifted inference” techniques have been proposed. While it has been demonstrated that these techniques will lead to significantly more efficient inference on some specific models, there are only very recent and still quite restricted results that show...... the feasibility of lifted inference on certain syntactically defined classes of models. Lower complexity bounds that imply some limitations for the feasibility of lifted inference on more expressive model classes were established earlier in Jaeger (2000; Jaeger, M. 2000. On the complexity of inference about...... that under the assumption that NETIME≠ETIME, there is no polynomial lifted inference algorithm for knowledge bases of weighted, quantifier-, and function-free formulas. Further strengthening earlier results, this is also shown to hold for approximate inference and for knowledge bases not containing...

Making Type Inference Practical

DEFF Research Database (Denmark)

Schwartzbach, Michael Ignatieff; Oxhøj, Nicholas; Palsberg, Jens

1992-01-01

We present the implementation of a type inference algorithm for untyped object-oriented programs with inheritance, assignments, and late binding. The algorithm significantly improves our previous one, presented at OOPSLA'91, since it can handle collection classes, such as List, in a useful way. Abo......, the complexity has been dramatically improved, from exponential time to low polynomial time. The implementation uses the techniques of incremental graph construction and constraint template instantiation to avoid representing intermediate results, doing superfluous work, and recomputing type information....... Experiments indicate that the implementation type checks as much as 100 lines pr. second. This results in a mature product, on which a number of tools can be based, for example a safety tool, an image compression tool, a code optimization tool, and an annotation tool. This may make type inference for object...

Radiocarbon intercomparison program for Chauvet Cave

International Nuclear Information System (INIS)

Cuzange, M.T.; Delque-Kolic, E.; Oberlin, C.; Goslar, T.; Grootes, P.M.; Nadeau, M.J.; Higham, T.; Ramsey, C.B.; Kaltnecker, E.; Paterne, M.; Valladas, H.; Van der Plicht, J.; Van der Plicht, J.; Clottes, J.; Geneste, J.M.

2007-01-01

We present the first results of an accelerator mass spectrometry (AMS) radiocarbon intercomparison program on 3 different charcoal samples collected in one of the hearths of the Megaceros gallery of Chauvet Cave (Ardeche, France). This cave, rich in parietal decoration, is important for the study of the appearance and evolution of prehistoric art because certain drawings have been 14 C dated to the Aurignacian period at the beginning of the Upper Paleolithic. The new dates indicate an age of about 32,000 BP, which is consistent with this attribution and in agreement with the results from the same sector of the cave measured previously at the Laboratoire des Sciences du Climat et de l'Environnement (LSCE). Six laboratories were involved in the intercomparison. Samples were measured in 4 AMS facilities: Center for Isotope Research, Groningen University, the Netherlands; the Oxford Radiocarbon Accelerator Unit, UK; the Centre de datation par le carbone 14, Univ. Claude Bernard Lyon 1, France (measured by AMS facilities of Poznan University, Poland); and the LSCE, UMR CEA-CNRS-UVSQ, France (measured by the Leibniz-Labor of Christian-Albrechts-Universitat Kiel, Germany). (authors)

Characterization and management trends of negative and positive impacts of tourism in show caves

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Heros Augusto Santos Lobo

2015-08-01

Full Text Available Caves are one of the most fragile environments on Earth ’s surface, in function of physical, atmospheric and biological specificities. The natural characteristics associated with cultural aspects of local people are the reasons to tourist potential of caves. However, the tourist use of caves can generate negative impacts on the environment. This consequence happens when inappropriate procedures of planning and management of tourism are used. Negative impacts are described in this review, as also indications of management techniques to avoid, decrease or eliminate the negative consequences of tourism in caves. Positive impacts are also presented, in order to achieve a sustainable tourism in show caves. The conclusion argues that the negative impacts should not be considered as impediments to tourism in caves. It is important to know these impacts and use it as a key to get previous answers which allow to raise the sustainability of show caves.

Pisgah Lava Cave Communication Test: Science Case Study for the Networked Constellations Initiative

Science.gov (United States)

Belov, K.; Ellison, D.; Fraeman, A.

2017-01-01

As part of the science case study for the Networked Constellations initiative, a team of JPL scientists explore the possibility of a mission to study the lava caves on Mars. Natural caves on Mars and the Moon present a unique opportunity to learn about the planetary geology and to provide a shelter for human explorers. Due to power and communication challenges, a network of assets has significant advantages over a single asset sent inside a cave. However, communication between the assets and the data downlink present significant difficulties due to the presence of rough walls, boulders, and other obstacles with unknown dielectric constant inside a typical cave, disturbing the propagation of the radio waves. A detailed study is needed to establish the limitations of the current communication technologies and to develop requirements for the new communication technology applicable to the cave environment. On May 4 of 2017, Konstantin Belov, Doug Ellison, and Abby Fraeman visited a lava cave in Pisgah, CA. The purpose of the visit was to build a 3D map of the cave, which could be used to create a model of radio wave propagation, and to conduct a series of communication tests using off-the-shelf equipment to verify the in-cave communication challenges. This experiment should be considered as a simple 'proof of concept' and is the subject of this report.

Dating Petroglyphs from Fugoppe Cave, Japan

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Masaru Ogawa

2014-01-01

Full Text Available For over 20 years, I have tried to establish a relative date for petroglyphs in Fugoppe Cave, Japan. Unsuspected amidst debris accumulating from about 1300 years ago, the petroglyphs were rediscovered accidentally in 1950. From an analysis of petroglyphs on fallen rocks scattered randomly on the site floor, I argue that the artworks date from ca.1900 years ago. The cave itself, formed by wave action, saw its main occupation by pottery-making people from 1700–1500 years ago; although the petroglyphs on the rock walls predated their occupation, it seems unlikely that the occupants attached any meaning to them.

Unexpected diversity of sandflies (Diptera: Psychodidae) in tourist caves in Northern Thailand.

Science.gov (United States)

Sukantamala, Jedsada; Sing, Kong-Wah; Jaturas, Narong; Polseela, Raxsina; Wilson, John-James

2017-11-01

Certain species of Phlebotomine sandflies (Diptera: Psychodidae) are vectors of the protozoa which causes leishmaniasis. Sandflies are found breeding in enclosed places like caves. Thailand is a popular tourist destination, including for ecotourism activities like caving, which increases the risk of contact between tourists and sandflies. Surveillance of sandflies is important for monitoring this risk but identification of species based on morphology is challenged by phenotypic plasticity and cryptic diversity. DNA barcodes have been used for the identification of sandflies in Thailand. We collected sandflies using CDC light trap from four tourist caves in Northern Thailand. Female sandflies were provisionally sorted into 13 morphospecies and 19 unidentified specimens. DNA was extracted from the thorax and legs of sandflies and the DNA barcode region of cytochrome c oxidase I mtDNA amplified and sequenced. The specimens were sorted into 22 molecular operational taxonomic units (MOTU) based on the 145 DNA barcodes, which is significantly more than the morphospecies. Several of the taxa thought to be present in multiple caves, based on morphospecies sorting, split into cave-specific MOTU which likely represent cryptic species. Several MOTU reported in an earlier study from Wihan Cave, Thailand, were also found in these caves. This supports the use of DNA barcodes to investigate species diversity of sandflies and their useful role in surveillance of sandflies in Thailand.

Cave-dwelling bats (Mammalia: Chiroptera) and conservation concerns in South central Mindanao, Philippines

OpenAIRE

Krizler C. Tanalgo; John Aries G. Tabora

2015-01-01

The stable microclimate in caves provides a relatively constant habitat for many bat species in the Philippines, but human encroachment continues to disrupt this habitat and imperil many of the species roosting in the caves.  In South central Mindanao, the diversity and conservation status of cave bats remain undocumented and unexplored.  We employed mist-netting to capture bats from five different caves within the town of Kabacan, northern Cotabato, Philippines.  A total of 14 bat species we...

Inferring motion and location using WLAN RSSI

NARCIS (Netherlands)

Kavitha Muthukrishnan, K.; van der Zwaag, B.J.; Havinga, Paul J.M.; Fuller, R.; Koutsoukos, X.

2009-01-01

We present novel algorithms to infer movement by making use of inherent fluctuations in the received signal strengths from existing WLAN infrastructure. We evaluate the performance of the presented algorithms based on classification metrics such as recall and precision using annotated traces

Cave Holography – Out of the lab and under the ground

International Nuclear Information System (INIS)

Klayer, J

2013-01-01

This paper describes the combination of my hobbies, caving and holography. Most traditional holography involves bringing the objects to a lab with all the necessary holography equipment mounted on a stable table. I instead bring all the equipment assembled as a portable unit to the natural formations in a cave with the cave itself being the stable table. The first successes were Denisyuks made with a HeNe or laser diode and spatial filter mounted on a tripod. For greater depth, transmission holograms were made with a DPSS laser in several configurations sometimes using fiber optics to route the reference beam and sometimes a spatial filter and mirrors. The cave environment presents unique obstacles that have been overcome as evidenced by the beautiful holograms made.

Hominin-bearing caves and landscape dynamics in the Cradle of Humankind, South Africa

Science.gov (United States)

Dirks, Paul H. G. M.; Berger, Lee R.

2013-02-01

This paper provides constraints on the evolution of the landscape in the Cradle of Humankind (CoH), UNESCO World Heritage Site, South Africa, since the Pliocene. The aim is to better understand the distribution of hominin fossils in the CoH, and determine links between tectonic processes controlling the landscape and the evolution and distribution of hominins occupying that landscape. The paper is focused on a detailed reconstruction of the landscape through time in the Grootvleispruit catchment, which contains the highly significant fossil site of Malapa and the remains of the hominin species Australopithicus sediba. In the past 4 My the landscape in the CoH has undergone major changes in its physical appearance as a result of river incision, which degraded older African planation surfaces, and accommodated denudation of cover rocks (including Karoo sediments and various sil- and ferricretes) to expose dolomite with caves in which fossils collected. Differentially weathered chert breccia dykes, calibrated with 10Be exposure ages, are used to estimate erosion patterns of the landscape across the CoH. In this manner it is shown that 2 My ago Malapa cave was ˜50 m deep, and Gladysvale cave was first exposed; i.e. landscape reconstructions can provide estimates for the time of opening of cave systems that trapped hominin and other fossils. Within the region, cave formation was influenced by lithological, layer-parallel controls interacting with cross-cutting fracture systems of Paleoproterozoic origin, and a NW-SE directed extensional far-field stress at a time when the African erosion surface was still intact, and elevations were probably lower. Cave geometries vary in a systematic manner across the landscape, with deep caves on the plateau and cave erosion remnants in valleys. Most caves formed to similar depths of 1400-1420 mamsl across much of the CoH, indicating that caves no longer deepened once Pliocene uplift and incision occurred, but acted as passive

Reproductive Seasonality in Nesticus (Araneae: Nesticidae) Cave Spiders.

Science.gov (United States)

Carver, Linnea M; Perlaky, Patricia; Cressler, Alan; Zigler, Kirk S

2016-01-01

Spiders of the family Nesticidae are members of cave communities around the world with cave-obligate (troglobiotic) species known from North America, Europe, Asia and the Indo-Pacific. A radiation of Nesticus (Araneae: Nesticidae) in the southern Appalachians includes ten troglobiotic species. Many of these species are of conservation interest due to their small ranges, with four species being single-cave endemics. Despite conservation concerns and their important role as predators in cave communities, we know little about reproduction and feeding in this group. We addressed this knowledge gap by examining populations of two species on a monthly basis for one year. We made further observations on several other species and populations, totaling 671 individual spider observations. This more than doubled the reported observations of reproduction and feeding in troglobiotic Nesticus. Female Nesticus carry egg sacs, facilitating the determination of the timing and frequency of reproduction. We found that Nesticus exhibit reproductive seasonality. Females carried egg sacs from May through October, with a peak in frequency in June. These spiders were rarely observed with prey; only 3.3% (22/671) of individuals were observed with prey items. The frequency at which prey items were observed did not vary by season. Common prey items were flies, beetles and millipedes. Troglobiotic species constituted approximately half of all prey items observed. This result represents a greater proportion of troglobiotic prey than has been reported for various troglophilic spiders. Although our findings shed light on the life history of troglobiotic Nesticus and on their role in cave ecosystems, further work is necessary to support effective conservation planning for many of these rare species.

Morphometry and distribution of isolated caves as a guide for phreatic and confined paleohydrological conditions

Science.gov (United States)

Frumkin, Amos; Fischhendler, Itay

2005-04-01

Isolated caves are a special cave type common in most karst terrains, formed by prolonged slow water flow where aggressivity is locally boosted. The morphometry and distribution of isolated caves are used here to reconstruct the paleohydrology of a karstic mountain range. Within a homogenous karstic rock sequence, two main types of isolated caves are distinguished, and each is associated with a special hydrogeologic setting: maze caves form by rising water in the confined zone of the aquifer, under the Mt. Scopus Group (Israel) confinement, while chamber caves are formed in phreatic conditions, apparently by lateral flow mixing with a vadose input from above.

Radon in Austrian tourist mines and show caves

International Nuclear Information System (INIS)

Ringer, W.; Graeser, J.

2009-01-01

The radon situation in tourist mines and show caves is barely investigated in Austria. This paper investigates the influence of its determining factors, such as climate, structure and geology. For this purpose, long-term time-resolved measurements over 6 to 12 months in 4 tourist mines and 2 show caves - with 5 to 9 measuring points each - have been carried out to obtain the course of radon concentration throughout the year. In addition, temperature and air-pressure were measured and compared to the data outside where available. Results suggest that the dominating factors of the average radon concentration are structure and location (geology) of the tunnel-system, whereas the diurnal and annual variation is mainly caused by the changing airflow, which is driven by the difference in temperature inside and outside. Downcast air is connected with very low radon concentrations, upcast air with high concentrations. In some locations the maximum values appear when the airflow ceases. But airflow can be different in different parts of mines and caves. Systems close to the surface show generally lower radon levels than the ones located deeper underground. Due to variation of structure, geology and local climate, the radon situation in mines and caves can only be described by simultaneous measurements at several measuring points. (orig.)

Spatial and temporal changes in invertebrate assemblage structure from the entrance to deep-cave zone of a temperate marble cave

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Benjamin W. Tobin

2013-09-01

Full Text Available Seasonality in surface weather results in seasonal temperature and humidity changes in caves. Ecological and physiological differences among trogloxenes, troglophiles, and troglobionts result in species-dependent responses to this variability. To investigate these responses, we conducted five biological inventories in a marble cave in the Sierra Nevada Range, California, USA between May and December 2010. The cave was divided into six quadrats and temperature was continuously logged in each (humidity was logged at the entrance and in the deep cave. With increasing distance from the entrance, temperature changes were increasingly attenuated and lagged relative to surface temperature. Linear regressions were created to determine the relationship between measured environmental variables and diversity for cavernicoles (troglobionts and troglophiles and trogloxenes cave– wide and in the transition zone. Diversity for cavernicoles and trogloxenes peaked in the entrance and deep cave zones, respectively. Quadrat, date, 2-week antecedent temperature average, 2-week antecedent temperature range, and trogloxene abundance explained 76% of cavernicole diversity variability. Quadrat explained 55% of trogloxene diversity variability. In the transition zone, trogloxene abundance explained 26% of cavernicole variability and 2-week antecedent temperature and 2-week antecedent temperature range explained 40% of trogloxene variability. In the transition zone, trogloxene diversity was inversely related to 2-week antecedent temperature average and 2-week antecedent temperature range, suggesting that species were moving into the transition zone when temperature was most stable. In a CCA of cavernicoles distribution data and environmental variables, 35% of variation in species-specific distributions was attributable to quadrat, and non-significant percentages were explained by date and environmental variables. Differences in assemblage structure among quadrats were

Mesolithic burial place in La Martina Cave (Dinant, Belgium)

International Nuclear Information System (INIS)

Dewez, M.; Gilot, E.; Groessens-Van-Dyck, M.C.; Cordy, J.M.

1995-01-01

The ''La Martina'' cave is located near Dinant (Belgium). Although the sediments had been shoveled out in the mid XIXth century, a calcic breccia has provided prehistoric bones. We can distinguish a Pleistocene fauna with cave bear, one Mesolithic burial place with two cromagnoid skeletons, from the 6th millennium BC, and some Holocene faunal remains. (authors). 7 refs

Detection of abandoned mines/caves using airborne LWIR hyperspectral data

Science.gov (United States)

Shen, Sylvia S.; Roettiger, Kurt A.

2012-09-01

The detection of underground structures, both natural and man-made, continues to be an important requirement in both the military/intelligence and civil communities. There are estimates that as many as 70,000 abandoned mines/caves exist across the nation. These mines represent significant hazards to public health and safety, and they are of concern to Government agencies at the local, state, and federal levels. NASA is interested in the detection of caves on Mars and the Moon in anticipation of future manned space missions. And, the military/ intelligence community is interested in detecting caves, mines, and other underground structures that may be used to conceal the production of weapons of mass destruction or to harbor insurgents or other persons of interest by the terrorists. Locating these mines/caves scattered over millions of square miles is an enormous task, and limited resources necessitate the development of an efficient and effective broad area search strategy using remote sensing technologies. This paper describes an internally-funded research project of The Aerospace Corporation (Aerospace) to assess the feasibility of using airborne hyperspectral data to detect abandoned cave/mine entrances in a broad-area search application. In this research, we have demonstrated the potential utility of using thermal contrast between the cave/mine entrance and the ambient environment as a discriminatory signature. We have also demonstrated the use of a water vapor absorption line at12.55 μm and a quartz absorption feature at 9.25 μm as discriminatory signatures. Further work is required to assess the broader applicability of these signatures.

Bomb-spike dating of a mummified baboon in Ludwig Cave, Namibia

Directory of Open Access Journals (Sweden)

Hodgins Greg

2007-01-01

Full Text Available In 1982 a mummified adult female baboon was discovered on a ledge in Ludwig Cave in Namibia. A toe bone was removed for dating in July 1995. AMS radiocarbon dating of bone collagen, tendon, and skin indicates a post-modern age. Application of the atomic bomb-spike calibration curve suggests death in late 1977 and an age at death of around 19 years. Baboons roost in the cave and the mummified female, along with a mummified juvenile male discovered in 2002 and three rotting corpses discovered in 1995, were probably chased by other baboons or by leopards down a ca. 6 m drop during the rainy season, and were unable to climb the steep and very slippery slope to escape. The large number of baboons trapped in the cave in less than 20 years, and mummification of two individuals on dry, dusty ledges in the cave, may explain why large numbers of baboon skeletons have been discovered in ancient bone breccias (up to 4 Ma old in a number of caves throughout Southern Africa.

Radon exposure, chromosomal aberrations, and genetic polymorphisms in selected Slovak cave workers

International Nuclear Information System (INIS)

Musak, L.; Pec, M.; Vicanova, M.; Vodicka, P.; Hanova, M.; Buchancova, J.; Moravcikova, K.; Klimentova, G.; Vodickova, L.

2005-01-01

The aim of work was genotoxic risk assessment of the Slovak show cave workers employed by the Slovak Caves Administration in Liptovsky Mikulas. They are guides or administrators of the four Slovak show caves: Vazecka, Demanovska, Bystrianska, and Harmanecka. We examined 51 workers exposed to radon, with average age 35.64 years ± 6.63 (SD) and average exposition time 9.78 years ± 6.27 (SD). They are 43 men (i.e. 84.31 %) and 9 women (i.e. 15.69 %). The control group consisted of 32 healthy workers from Faculty Hospital in Martin. The workers were not exposed to any genotoxic agents. The average age is 31.84 years ± 5.84(SD). From every subject we evaluated 100 mitosis, i.e. 5100 mitosis from exposed workers and 3200 mitosis from control subjects. In exposed group we found in 111 cells chromosomal aberrations, this present 2.18 % Ab.c. ± 0.19 (SEM), and in control 1 st group 1.53 % ± 0.16 (SEM). There are 106 breaks (95.50%), and 5 exchanges (4.50%) on chromosomes. The highest number of Ab.c. we detected in workers of Vazecka (2.63 % Ab.c) and Bystrianska (2.00 % Ab.c.) caves. There is a significant increase (P < 0.05) in the mean number of Ab.c. in workers of cave Vazecka as compared to control. In 15 cases (i.e. 28.30 %) we found increase or high exposure to genotoxic agents, we found any difference between sex, and any dependence of the number of Ab.c. on age and time of exposure. The Vazecka cave workers showed three times higher mean effective doses all the year round (milliSievert) than workers additional caves. The measured values of radiation in the caves and mines exceeded the permissible limits and Regional Hygienist of the Central Slovakia declared in 1981 the risk zones and, at the same time, the monitoring of working atmosphere was initiated. Our evaluations referred to certain exposition of this carcinogen in cave workers too. The essence of prevention is based in the lowering of ionizing radiation and improvement of the sanitary

The significance of the second cave episode in Jerome’s Vita Malchi

Directory of Open Access Journals (Sweden)

Jacobus P. Kritzinger

2014-02-01

Full Text Available The authors argue that the second cave episode in Jerome’s Vita Malchi Monachi Captivi should, in view of the similarities with the first cave episode and the high incidence of literary devices employed in it, be recognised for its value in the interpretation of this vita. The book was intended as a defence of, and an exhortation to a life of celibacy and this dual purpose is clearly demonstrated in both episodes in which a cave is used as the setting. The second cave episode has been neglected in the scholarly debate about the purpose of the book and this article attempts to set the record straight.

A linear programming model for protein inference problem in shotgun proteomics.

Science.gov (United States)

Huang, Ting; He, Zengyou

2012-11-15

Assembling peptides identified from tandem mass spectra into a list of proteins, referred to as protein inference, is an important issue in shotgun proteomics. The objective of protein inference is to find a subset of proteins that are truly present in the sample. Although many methods have been proposed for protein inference, several issues such as peptide degeneracy still remain unsolved. In this article, we present a linear programming model for protein inference. In this model, we use a transformation of the joint probability that each peptide/protein pair is present in the sample as the variable. Then, both the peptide probability and protein probability can be expressed as a formula in terms of the linear combination of these variables. Based on this simple fact, the protein inference problem is formulated as an optimization problem: minimize the number of proteins with non-zero probabilities under the constraint that the difference between the calculated peptide probability and the peptide probability generated from peptide identification algorithms should be less than some threshold. This model addresses the peptide degeneracy issue by forcing some joint probability variables involving degenerate peptides to be zero in a rigorous manner. The corresponding inference algorithm is named as ProteinLP. We test the performance of ProteinLP on six datasets. Experimental results show that our method is competitive with the state-of-the-art protein inference algorithms. The source code of our algorithm is available at: https://sourceforge.net/projects/prolp/. zyhe@dlut.edu.cn. Supplementary data are available at Bioinformatics Online.

Engineering geologic conditions at the sinkhole entrance to Logan Cave, Benton County, Arkansas

Science.gov (United States)

Schulz, William H.; McKenna, Jonathan P.

2004-01-01

Logan Cave, located in Benton County, Arkansas, is inhabited by several endangered and threatened species. The cave and surrounding area was designated a National Wildlife Refuge under the control of the U.S. Fish and Wildlife Service (USFWS) in 1989. Cave researchers access the cave through a steep-sided sinkhole entrance, which also is one of the two access points used by endangered bats. There is evidence of instability of one of the entrance slopes that has raised concerns that the entrance could close if slope failure was to occur. At the request of USFWS, we performed an engineering geologic investigation of the sinkhole to evaluate stability of this slope, which is comprised of soil, and other mechanisms of sediment transport into the cave entrance. The investigation included engineering geologic mapping, sampling and laboratory testing of subsurface geologic materials, and slope-stability analysis. We found that the sinkhole slope that extends into the entrance of the cave is comprised of sandy and gravelly soil to the depths explored (6.4 meters). This soil likely was deposited as alluvium within a previous, larger sinkhole. Based on properties of the alluvium, geometry of the slope, and results of finite-element slope-stability analyses, we conclude that the slope is marginally stable. Future failures of the slope probably would be relatively thin and small, thus several would be required to completely close the cave entrance. However, sediment is accumulating within the cave entrance due to foot traffic of those accessing the cave, surface-water erosion and transport, and shallow slope failures from the other sinkhole slopes. We conclude that the entrance will be closed by sediment in the future, similar to another entrance that we identified that completely closed in the past. Several measures could be taken to reduce the potential for closure of the cave entrance, including periodic sediment removal, installation of materials that reduce erosion by

Seasonal variations of {sup 14}C and δ{sup 13}C for cave drip waters in Ryugashi Cave, Shizuoka Prefecture, central Japan

Energy Technology Data Exchange (ETDEWEB)

Minami, Masayo, E-mail: minami@nendai.nagoya-u.ac.jp [Center for Chronological Research, Nagoya University, Nagoya 464-8602 (Japan); Kato, Tomomi [Graduate School of Environmental Studies, Nagoya University, Nagoya 464-8601 (Japan); Horikawa, Keiji [Department of Environmental Biology and Chemistry, Toyama University, Toyama 930-8555 (Japan); Nakamura, Toshio [Center for Chronological Research, Nagoya University, Nagoya 464-8602 (Japan)

2015-11-01

Speleothem {sup 14}C has recently emerged as a potentially powerful proxy for hydrology changes in comparison with atmospheric {sup 14}C calibration curve, rather than as a direct dating tool, apart from a time marker using bomb peak of {sup 14}C. Some possible causes for the relationship between speleothem {sup 14}C content (or dead carbon fraction: DCF) and karst hydrology have been proposed, such as changes in temperature, precipitation, drip water flow dynamics, cave air ventilation, soil air pCO{sub 2}. In this study, we investigated seasonal variation in {sup 14}C and δ{sup 13}C of drip water in Ryugashi Cave, Shizuoka Prefecture, central Japan, to examine the causes of the {sup 14}C and δ{sup 13}C variations in a speleothem. The results show that different {sup 14}C concentrations and δ{sup 13}C values of drip water from the Ryugashi Cave, were exhibited at different sites of the Caves No. 1, No. 3, and No. 4, which have different temperature, air pCO{sub 2}, and flow paths. Further, the {sup 14}C and δ{sup 13}C of drip waters showed seasonal variations at all sites, which were lower in fall and winter, and higher in spring and summer, though the extent of the variations was different among the sites. The {sup 14}C in drip waters tended to be correlated with the drip rates: {sup 14}C tended to be higher in drip waters with higher drip rates, and also correlated with rainfall amount around the Ryugashi Cave, especially for the drip waters in Cave No. 3, which are considered to have simpler flow paths. The increase in rainfall amount could bring the increase in drip rate of drip water, and then the decrease in interaction between solution and karst, resulting in {sup 14}C increase (DCF decrease) in drip water. Accordingly, the reconstruction of precipitation could be performed using {sup 14}C variation in a speleothem formed by drip water with simple flow dynamics.

The microbiology of Lascaux Cave

Czech Academy of Sciences Publication Activity Database

Bastian, F.; Jurado, V.; Nováková, Alena; Alabouvette, C.; Saiz-Jimenez, C.

2010-01-01

Roč. 156, č. 3 (2010), s. 644-652 ISSN 1350-0872 Institutional research plan: CEZ:AV0Z60660521 Keywords : Lascaux Cave * microbiology * Paleolithic paintings Subject RIV: EH - Ecology, Behaviour Impact factor: 2.957, year: 2010

In situ acetylene reduction activity of Scytonema julianum in Vapor cave (Spain

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Asencio Antonia Dolores

2011-01-01

Full Text Available Nitrogen fixation was measured in situ for the first time by acetylene reduction for a greyish mat composed of Scytonema julianum in cave- like environments. Mat-specific rates (129.9-215.7 nmol C2 H4 m-2 s-1 for daytime fixation and 65.1-120.6 nmol C2 H4 m-2 s-1 for nighttime fixation recorded in the Vapor cave differed considerably due to the energy reserves stored during photosynthesis being exhausted and used in the dark phase. The most influential environmental parameter for nitrogen fixation in the Vapor cave is temperature in the daytime and nighttime fixations. Nitrogen fixation by cyanobacteria may contribute considerably to the overall nitrogen cycle in harsh environments such as caves. Nitrogenase activity in Scytonema julianum was roughly 30 times higher than that of Scytonema mirabile, which also grew in cave environments, which is due to the characteristics of each site. The entrance of Vapour cave (Spain faces SE, measures 0.75 x 0.6 m and opens to shafts of a total depth of 80 m. Its dimensions and environmental conditions (relative humidity up to 100%; maximum temperature, 43oC imply that it is isolated from external influences, and that the microclimate differs substantially from that experienced externally. Nitrogen fixation, photon flux density, relative humidity and temperature in the Vapor cave were taken hourly over a 24-hour period in winter.

Organochlorine residues in bat guano from nine Mexican caves, 1991

Science.gov (United States)

Clark, D.R.; Moreno-Valdez, A.; Mora, M.A.

1995-01-01

Samples of bat guano, primarily from Mexican free-tailed bats (Tadarida brasiliensis), were collected at nine bat roosts in caves in northern and eastern Mexico and analysed for organochlorine residues. DDE, the most abundant residue found in each cave, was highest (0.99 p.p.m. dry weight) at Ojuela Cave, Durango. Other studies of DDE in bat guano indicate that this concentration is too low to reflect harmful concentrations in the bats themselves. The DDE at Ojuela may represent either lingering residues from use of DDT years ago in the Ojuela area of perhaps depuration loss from migrant bats with summer maternity roost(s) in a DDE-contaminated area such as Carlsbad Cavern, New Mexico. Presence of o,p-DDT at Tio Bartolo Cave, Nuevo Leon, indicates recent use of DDT, but the concentration of this contaminant was low. Possible impacts on bat colonies of the organophosphorus and carbamate insecticides now in extensive use are unknown.

Microbial communities in dark oligotrophic volcanic ice cave ecosystems of Mt. Erebus, Antarctica

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Bradley M. Tebo

2015-03-01

Full Text Available The Earth’s crust hosts a subsurface, dark, and oligotrophic biosphere that is poorly understood in terms of the energy supporting its biomass production and impact on food webs at the Earth’s surface. Dark oligotrophic volcanic ecosystems (DOVEs are good environments for investigations of life in the absence of sunlight as they are poor in organics, rich in chemical reactants and well known for chemical exchange with Earth’s surface systems. Ice caves near the summit of Mt. Erebus (Antarctica offer DOVEs in a polar alpine environment that is starved in organics and with oxygenated hydrothermal circulation in highly reducing host rock. We surveyed the microbial communities using PCR, cloning, sequencing and analysis of the small subunit (16S ribosomal and Ribulose-1,5-bisphosphate Carboxylase/Oxygenase (RubisCO genes in sediment samples from three different caves, two that are completely dark and one that receives snow-filtered sunlight seasonally. The microbial communities in all three caves are composed primarily of Bacteria and fungi; Archaea were not detected. The bacterial communities from these ice caves display low phylogenetic diversity, but with a remarkable diversity of RubisCO genes including new deeply branching Form I clades, implicating the Calvin-Benson-Bassham cycle as a pathway of CO2 fixation. The microbial communities in one of the dark caves, Warren Cave, which has a remarkably low phylogenetic diversity, were analyzed in more detail to gain a possible perspective on the energetic basis of the microbial ecosystem in the cave. Atmospheric carbon (CO2 and CO, including from volcanic emissions, likely supplies carbon and/or some of the energy requirements of chemoautotrophic microbial communities in Warren Cave and probably other Mt. Erebus ice caves. Our work casts a first glimpse at Mt. Erebus ice caves as natural laboratories for exploring carbon, energy and nutrient sources in the subsurface biosphere and the

Forecasting building energy consumption with hybrid genetic algorithm-hierarchical adaptive network-based fuzzy inference system

Energy Technology Data Exchange (ETDEWEB)

Li, Kangji [Institute of Cyber-Systems and Control, Zhejiang University, Hangzhou 310027 (China); School of Electricity Information Engineering, Jiangsu University, Zhenjiang 212013 (China); Su, Hongye [Institute of Cyber-Systems and Control, Zhejiang University, Hangzhou 310027 (China)

2010-11-15

There are several ways to forecast building energy consumption, varying from simple regression to models based on physical principles. In this paper, a new method, namely, the hybrid genetic algorithm-hierarchical adaptive network-based fuzzy inference system (GA-HANFIS) model is developed. In this model, hierarchical structure decreases the rule base dimension. Both clustering and rule base parameters are optimized by GAs and neural networks (NNs). The model is applied to predict a hotel's daily air conditioning consumption for a period over 3 months. The results obtained by the proposed model are presented and compared with regular method of NNs, which indicates that GA-HANFIS model possesses better performance than NNs in terms of their forecasting accuracy. (author)

Recreational Impacts on the Microclimate of the Gorilla Limestone Cave in Shoushan National Nature Park of Taiwan

Science.gov (United States)

Chen, Chun; Ho, Lih-Der

2017-04-01

This study reports a continuous microclimate monitoring carried out in the Gorilla Cave (Kaohsiung, Taiwan) between December 2015 and December 2016. This limestone cave is located in the Mt. Shoushan, which is mainly composed of limestone and mudstone. This study tried to assess the recreational impacts to the microclimate of the cave by monitoring the CO2, temperature, humidity and barometric pressure. Two monitoring stations were set up respectively at the front part (station A) and the end of the cave (station B). We also set up an auto-operated time-lapse camera at the entrance of the cave to record the numbers of tourists, and their entering time and the durations in cave. As carbon dioxide in the limestone cave may have negative impact to both speleothems and visitors, our presentation focuses on the variations of CO2 concentration in the Gorilla Cave. Daily and seasonal fluctuations of CO2 concentration were observed. The fluctuations are closely related with the temperature outside the cave. In summer, when the temperature outside the cave maintained at 30。C, fluctuations of CO2 concentration in the cave will become chaotic. The CO2 concentration would fluctuate around 1000ppm most of the day, but it would be relatively low ( 500ppm) during the noon. In winter, when temperature outside the cave maintained below 25゜C, the fluctuation of CO2 concentration in cave presented a steady state ( 400-500 ppm). Only at the noon, the temperature outside the cave rose above 25 ゜C, the CO2 concentration inside the cave would increase. There were 1,517 tourists entered the cave during the monitoring period. The average number of visitors in a group is 13, and each group averagely stayed for 15 minutes. Over half of the visitors (776 tourists) entered the cave in December, due to lower humidity, drier in the cave and less dripping water in winter. After tourists entered the cave, the CO2 concentration value of station A rose instantly. However, most tourists stayed

Experimental Research on Internal Behaviors of Caved Rocks under the Uniaxial Confined Compression

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Yu-jiang Zhang

2017-01-01

Full Text Available As main composition of longwall gob, caved rocks’ behaviors and their impacts under compression crucially influence strata control, subsidence, associated resources extraction, and many other aspects. However, current researches are based on a whole sample, due to looseness of caved rocks and limitation of observation technology. In this paper, an experiment system was built to investigate internal behaviors of caved rocks’ sample, under the uniaxial confined compression, including movement and breakage behavior by the digital image processing technologies. The results show that the compression process of caved rocks could be divided into two stages by relative density. Boundary effect and changes of voids and contact pressure among caved rocks lead to different movement law in different position in sample’s interior. A stratification phenomenon of breakage was discovered, which presents breakage concentration in the middle of the sample. The nonlinear movement and shear dislocation induced by shifts among caved rocks are the reason of the breakage stratification phenomenon. This phenomenon would have an effect on the permeability and seepage research of similar medium.

Reconciling Mining with the Conservation of Cave Biodiversity: A Quantitative Baseline to Help Establish Conservation Priorities.

Science.gov (United States)

Jaffé, Rodolfo; Prous, Xavier; Zampaulo, Robson; Giannini, Tereza C; Imperatriz-Fonseca, Vera L; Maurity, Clóvis; Oliveira, Guilherme; Brandi, Iuri V; Siqueira, José O

2016-01-01

Caves pose significant challenges for mining projects, since they harbor many endemic and threatened species, and must therefore be protected. Recent discussions between academia, environmental protection agencies, and industry partners, have highlighted problems with the current Brazilian legislation for the protection of caves. While the licensing process is long, complex and cumbersome, the criteria used to assign caves into conservation relevance categories are often subjective, with relevance being mainly determined by the presence of obligate cave dwellers (troglobites) and their presumed rarity. However, the rarity of these troglobitic species is questionable, as most remain unidentified to the species level and their habitats and distribution ranges are poorly known. Using data from 844 iron caves retrieved from different speleology reports for the Carajás region (South-Eastern Amazon, Brazil), one of the world's largest deposits of high-grade iron ore, we assess the influence of different cave characteristics on four biodiversity proxies (species richness, presence of troglobites, presence of rare troglobites, and presence of resident bat populations). We then examine how the current relevance classification scheme ranks caves with different biodiversity indicators. Large caves were found to be important reservoirs of biodiversity, so they should be prioritized in conservation programs. Our results also reveal spatial autocorrelation in all the biodiversity proxies assessed, indicating that iron caves should be treated as components of a cave network immersed in the karst landscape. Finally, we show that by prioritizing the conservation of rare troglobites, the current relevance classification scheme is undermining overall cave biodiversity and leaving ecologically important caves unprotected. We argue that conservation efforts should target subterranean habitats as a whole and propose an alternative relevance ranking scheme, which could help simplify the

Geochemical characteristics of cave drip water respond to ENSO based on a 6-year monitoring work in Yangkou Cave, Southwest China

Science.gov (United States)

Chen, Chao-Jun; Li, Ting-Yong

2018-06-01

The scientific explanation of speleothem δ18O in Chinese monsoon region is a greatly debated issue. Modern cave monitoring combined with instrument observation maybe is an essential solution to deal with this issue. During the period from 2011 to 2016, we monitored local precipitation, soil water in three soil profiles, and six drip water sites in Yangkou Cave, which is located in Chongqing City, Southwest China. This article presents measurements about δ18O, δD and Mg/Ca ratios of drip water and compared these geochemical proxies with contemporaneous atmospheric circulations. The main conclusions are: (1) As water migrates from precipitation to soil water to cave drip water, the amplitudes of seasonal variations in δD and δ18O decreased gradually. Due to the existence of complex hydrogeological conditions, the range of variation and the seasonal characteristics of δD and δ18O differ among the drip sites where samples were collected, but the interannual variability is nearly the same. The drip water Mg/Ca ratios are mainly regulated by changes in hydrological conditions in the epikarst zone, with higher values during winter months than that during summer months. (2) When an El Niño event occurs, the Western Pacific Subtropical High (WPSH) is migrated westward, and the production of near-source water vapor from the western Pacific and the South China Sea increases, leading to higher δ18O values in the precipitation and the cave drip water. The drip water Mg/Ca ratios were significantly lower with increased summer precipitation. On the other hand, during La Niña events, the WPSH is migrated eastward, and inputs of water vapor that has traveled greater distances (from the Indian Ocean) become comparatively important, resulting in lower δ18O values in the precipitation and the cave drip water. The drip water Mg/Ca ratios were higher with decreased summer precipitation. In summary, the interannual variability of δ18O in the drip waters of Yangkou Cave

Orthothermographies and 3D modeling as potential tools in ice caves studies: the Peña Castil Ice Cave (Picos de Europa, Northern Spain

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Fernando Berenguer-Sempere

2014-01-01

Full Text Available Currently there are many studies focused on the investigation of climatic and glaciological condition of ice caves. Here we present another way to address these studies, applying some methods already used in fields other than geomorphology. The versatility and accuracy provided by the use of modern topography and thermography techniques, using Terrestrial Laser Scanner and current thermographic cameras- and the creation of 3D thermographic models and orthothermographies derived from them - is shown to be a useful tool as it is difficult to obtain data from fieldwork and traditional methods used in caves. This paper presents the potential uses of combined TLS and thermographic techniques for monitoring some important climatological parameters in the sensitive periglacial environment of the Iberian Atlantic high mountains: Peña Castil Ice Cave (Picos de Europa, Northern Spain. A systematic application of such combined technologies to these kind of caves, is expected to contribute to a quantitative and concise characterization of the evolution of the ice as shown by the results of this study.

Diversity and role of cave-dwelling hematophagous insects in pathogen transmission in the Afrotropical region.

Science.gov (United States)

Obame-Nkoghe, Judicaël; Leroy, Eric-Maurice; Paupy, Christophe

2017-04-12

The progressive anthropization of caves for food resources or economic purposes increases human exposure to pathogens that naturally infect cave-dwelling animals. The presence of wild or domestic animals in the immediate surroundings of caves also may contribute to increasing the risk of emergence of such pathogens. Some zoonotic pathogens are transmitted through direct contact, but many others require arthropod vectors, such as blood-feeding insects. In Africa, hematophagous insects often play a key role in the epidemiology of many pathogens; however, their ecology in cave habitats remains poorly known. During the last decades, several investigations carried out in Afrotropical caves suggested the medical and veterinary importance particularly of insect taxa of the Diptera order. Therefore, the role of some of these insects as vectors of pathogens that infect cave-dwelling vertebrates has been studied. The present review summarizes these findings, brings insights into the diversity of cave-dwelling hematophagous Diptera and their involvement in pathogen transmission, and finally discusses new challenges and future research directions.

Diachronic Change within the Still Bay at Blombos Cave, South Africa.

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Will Archer

Full Text Available Characteristically shaped bifacial points are stone artefacts with which the Middle Stone Age Still Bay techno-complex in Southern Africa is identified. Traditional approaches such as chaîne opératoire and two-dimensional metrics in combination with attribute analyses have been used to analyse variability within Still Bay point assemblages. Here we develop a protocol to extract and analyse high resolution 3-dimensional geometric morphometric information about Still Bay point morphology. We also investigate ways in which the independent variables of time, raw-material and tool size may be driving patterns of shape variation in the Blombos Cave point assemblage. We demonstrate that at a single, stratified Still Bay site points undergo significant modal changes in tool morphology and standardization. Our results caution against (1 treatment of the Still Bay as a static technological entity and (2 drawing demographic inferences stemming from grouping Still Bay point collections within the same cultural label.

Mapping planetary caves with an autonomous, heterogeneous robot team

Science.gov (United States)

Husain, Ammar; Jones, Heather; Kannan, Balajee; Wong, Uland; Pimentel, Tiago; Tang, Sarah; Daftry, Shreyansh; Huber, Steven; Whittaker, William L.

Caves on other planetary bodies offer sheltered habitat for future human explorers and numerous clues to a planet's past for scientists. While recent orbital imagery provides exciting new details about cave entrances on the Moon and Mars, the interiors of these caves are still unknown and not observable from orbit. Multi-robot teams offer unique solutions for exploration and modeling subsurface voids during precursor missions. Robot teams that are diverse in terms of size, mobility, sensing, and capability can provide great advantages, but this diversity, coupled with inherently distinct low-level behavior architectures, makes coordination a challenge. This paper presents a framework that consists of an autonomous frontier and capability-based task generator, a distributed market-based strategy for coordinating and allocating tasks to the different team members, and a communication paradigm for seamless interaction between the different robots in the system. Robots have different sensors, (in the representative robot team used for testing: 2D mapping sensors, 3D modeling sensors, or no exteroceptive sensors), and varying levels of mobility. Tasks are generated to explore, model, and take science samples. Based on an individual robot's capability and associated cost for executing a generated task, a robot is autonomously selected for task execution. The robots create coarse online maps and store collected data for high resolution offline modeling. The coordination approach has been field tested at a mock cave site with highly-unstructured natural terrain, as well as an outdoor patio area. Initial results are promising for applicability of the proposed multi-robot framework to exploration and modeling of planetary caves.

Biochemical mechanisms of resistance to p-nitrochlorobenzene of karst caves microorganisms

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O. S. Suslova

2015-08-01

Full Text Available The biochemical mechanisms of resistance to persistent organic xenobiotic p-nitrochlorobenzene (NCB of bacterial strains isolated from two cave clays ecosystems – Mushkarova Yama (Podolia, Ukraine and Kuybyshevskaya (Western Caucasus, Abkhazia have been established. It has been determined that chemoorganotrophic karst caves strains could interact with NCB and transform it reducing the nitro group with formation of p-chloroaniline (ClA followed by further destruction of NCB aromatic ring. This explained high resistance of caves strains to NCB. The studied strains could potentially be used in wastewater treatment from nitrochloraromatic compounds.

Occurrence of organic wastewater and other contaminants in cave streams in northeastern Oklahoma and northwestern Arkansas

Science.gov (United States)

Bidwell, Joseph R.; Becker, C.; Hensley, S.; Stark, R.; Meyer, M.T.

2010-01-01

The prevalence of organic wastewater compounds in surface waters of the United States has been reported in a number of recent studies. In karstic areas, surface contaminants might be transported to groundwater and, ultimately, cave ecosystems, where they might impact resident biota. In this study, polar organic chemical integrative samplers (POCISs) and semipermeable membrane devices (SPMDs) were deployed in six caves and two surface-water sites located within the Ozark Plateau of northeastern Oklahoma and northwestern Arkansas in order to detect potential chemical contaminants in these systems. All caves sampled were known to contain populations of the threatened Ozark cavefish (Amblyopsis rosae). The surface-water site in Oklahoma was downstream from the outfall of a municipal wastewater treatment plant and a previous study indicated a hydrologic link between this stream and one of the caves. A total of 83 chemicals were detected in the POCIS and SPMD extracts from the surface-water and cave sites. Of these, 55 chemicals were detected in the caves. Regardless of the sampler used, more compounds were detected in the Oklahoma surface-water site than in the Arkansas site or the caves. The organic wastewater chemicals with the greatest mass measured in the sampler extracts included sterols (cholesterol and ??-sitosterol), plasticizers [diethylhexylphthalate and tris (2-butoxyethyl) phosphate], the herbicide bromacil, and the fragrance indole. Sampler extracts from most of the cave sites did not contain many wastewater contaminants, although extracts from samplers in the Oklahoma surfacewater site and the cave hydrologically linked to it had similar levels of diethylhexyphthalate and common detections of carbamazapine, sulfamethoxazole, benzophenone, N-diethyl-3-methylbenzamide (DEET), and octophenol monoethoxylate. Further evaluation of this system is warranted due to potential ongoing transport of wastewaterassociated chemicals into the cave. Halogenated organics

Application of Ground Penetrating Radar Supported by Mineralogical-Geochemical Methods for Mapping Unroofed Cave Sediments

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Teja Čeru

2018-04-01

Full Text Available Ground penetrating radar (GPR using a special unshielded 50 MHz Rough Terrain Antenna (RTA in combination with a shielded 250 MHz antenna was used to study the capability of this geophysical method for detecting cave sediments. Allochthonous cave sediments found in the study area of Lanski vrh (W Slovenia are now exposed on the karst surface in the so-called “unroofed caves” due to a general lowering of the surface (denudation of carbonate rocks and can provide valuable evidence of the karst development. In the first phase, GPR profiles were measured at three test locations, where cave sediments are clearly evident on the surface and appear with flowstone. It turned out that cave sediments are clearly visible on GPR radargrams as areas of strong signal attenuation. Based on this finding, GPR profiling was used in several other places where direct indicators of unroofed caves or other indicators for speleogenesis are not present due to strong surface reshaping. The influence of various field conditions, especially water content, on GPR measurements was also analysed by comparing radargrams measured in various field conditions. Further mineralogical-geochemical analyses were conducted to better understand the factors that influence the attenuation in the area of cave sediments. Samples of cave sediments and soils on carbonate rocks (rendzina were taken for X-ray diffraction (XRD and X-ray fluorescence (XRF analyses to compare the mineral and geochemical compositions of both sediments. Results show that cave sediments contain higher amounts of clay minerals and iron/aluminium oxides/hydroxides which, in addition to the thickness of cave sediments, can play an important role in the depth of penetration. Differences in the mineral composition also lead to water retention in cave sediments even through dry periods which additionally contribute to increased attenuation with respect to surrounding soils. The GPR method has proven to be reliable for

The chronology of Moncks Cave, Canterbury, New Zealand

International Nuclear Information System (INIS)

Jacomb, C.

2008-01-01

Moncks Cave is a key site in understanding the nature and course of change to Maori culture during the early period of New Zealand prehistory because of the range of both perishable and non-perishable artefacts found there in 1889. Understood to have been completely excavated at that time, the interpretation of the material culture of the site has been rendered difficult by the absence of chronological or stratigraphic provenance data. Recent investigations at Moncks Cave revealed several intact cultural deposits, including both faunal and artefactual remains. Eleven radiocarbon determinations on marine shell suggest that the cave was occupied some time between the mid-fourteenth and mid-fifteenth centuries AD. Although the dates cannot be directly correlated with any particular artefact, the results have important implications for the interpretation of the place of the site and its contents as a whole in the context of the New Zealand prehistoric sequence. (author). 22 refs., 5 figs., 1 tab

The Caves of Naica: a decade of research

International Nuclear Information System (INIS)

Gazquez, F.; Calaforra, J. M.; Porti, P.; Badino, G.

2016-01-01

The caves of the Naica Mine have been the subject of study by scientists from up to seven counties over the past decade. Up to fifty research works have published to date, most relating to the origin of the giant selenite crystals of the Cueva de los Cristales. Nevertheless, a great deal of knowledge has been generated about other relevant aspects of the Naica system. This paper puts together the vast information available about the Naica caves, from the discovery of the Cueva de los Cristales in 2000 to the more recent investigations addressing mineralogy, microclimatology and the use of gypsum speleothems as a palaeo-environmental proxy. Special attention has been paid to novel research lines that have started to use the speleothems of Naica as a study case, particularly in fields such as Astrobiology and Planetary geology. Moreover, the conservation challenges which these caves will face in the near future as consequence of the end of mining activities have also been addressed in this article. (Author)

Cave-dwelling bats (Mammalia: Chiroptera and conservation concerns in South central Mindanao, Philippines

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Krizler C. Tanalgo

2015-12-01

Full Text Available The stable microclimate in caves provides a relatively constant habitat for many bat species in the Philippines, but human encroachment continues to disrupt this habitat and imperil many of the species roosting in the caves.  In South central Mindanao, the diversity and conservation status of cave bats remain undocumented and unexplored.  We employed mist-netting to capture bats from five different caves within the town of Kabacan, northern Cotabato, Philippines.  A total of 14 bat species were identified including the Philippine endemics Hipposideros pygmaeus and Ptenochirus jagori and the threatened Megaerops wetmorei. However, despite the declining conservation status of the bats, local disturbance such as bat hunting for bush meat and unregulated tourism are currently taking place in the caves.  Large species such as Eonycteris spelaea and Rousettus amplexicaudatus are killed almost every day for food and trade.  Therefore, the high species richness, and the presence of endemic and threatened species coupled with the occurrence of anthropogenic disturbances in caves suggests the need for an urgent and effective conservation intervention involving the local government and public community. 

Geological constraints on cave development in the plateau-gorge karst of South China (Wulong, Chongqing)

Science.gov (United States)

Szczygieł, Jacek; Golicz, Mateusz; Hercman, Helena; Lynch, Erin

2018-03-01

The Houping Tiankeng cluster is a part of the South China Karst UNESCO World Natural Heritage Site. Within the distinctive Wulong plateau-gorge karst, > 200 km of cave passages have been documented to date. This paper focuses on detailed tectonic and morphological research on the Luo Shui Kong cave, enriched with U-series dating of speleothems and complemented by morphometric analysis of the San Wang Dong and Er Wang Dong caves. All of these caves exhibit three regional levels of cave development: 1) 1040-1020 m a.s.l.; 2) 900-840 m a.s.l.; and 3) 740-660 m a.s.l. The Houping Tiankeng area is a carbonate rock sequence several hundred meters thick, overlain by the less soluble Lower Ordovician strata, limiting recharge points to faults exposing underlying easily soluble formations. This leads to the domination of concentrated, high-volume inflow and thus results in caves of large volume in the plateau-gorge karst. Shafts connecting the surface with cave passages located underneath formed along faults, changing the hydrogeological pattern through karst water capture and remodeling of existing conduits, albeit mainly by increasing their overall dimensions rather than by deepening them. The most favorable structures for cave-level development are two sets of joints conjugated with gently inclined bedding. Since these joints are characterized by a small vertical extent, downward development is limited. Hence, most of the passages are wide but not deep canyons and typical of a water-table cave pattern. Places where the fault plane is eroded from the surface and where, at the same time, an underneath cave chamber ceiling expands upwards are particularly predisposed to the formation of a tiankeng.

Metagenomic Analysis from the Interior of a Speleothem in Tjuv-Ante's Cave, Northern Sweden.

Directory of Open Access Journals (Sweden)

Marie Lisandra Zepeda Mendoza

Full Text Available Speleothems are secondary mineral deposits normally formed by water supersaturated with calcium carbonate percolating into underground caves, and are often associated with low-nutrient and mostly non-phototrophic conditions. Tjuv-Ante's cave is a shallow-depth cave formed by the action of waves, with granite and dolerite as major components, and opal-A and calcite as part of the speleothems, making it a rare kind of cave. We generated two DNA shotgun sequencing metagenomic datasets from the interior of a speleothem from Tjuv-Ante's cave representing areas of old and relatively recent speleothem formation. We used these datasets to perform i an evaluation of the use of these speleothems as past biodiversity archives, ii functional and taxonomic profiling of the speleothem's different formation periods, and iii taxonomic comparison of the metagenomic results to previous microscopic analyses from a nearby speleothem of the same cave. Our analyses confirm the abundance of Actinobacteria and fungi as previously reported by microscopic analyses on this cave, however we also discovered a larger biodiversity. Interestingly, we identified photosynthetic genes, as well as genes related to iron and sulphur metabolism, suggesting the presence of chemoautotrophs. Furthermore, we identified taxa and functions related to biomineralization. However, we could not confidently establish the use of this type of speleothems as biological paleoarchives due to the potential leaching from the outside of the cave and the DNA damage that we propose has been caused by the fungal chemical etching.

Sistema Faro, Isla de Mona, Puerto Rico: speleogenesis of the worlds largest flank margin cave

International Nuclear Information System (INIS)

Lace, M. J.; Kambesis, P. N.; Mylroie, J. E.

2016-01-01

Isla de Mona, a small, uplifted carbonate plateau jutting out of the waters of the Mona Passage, is an incredibly fragile and densely karstic environment. Expedition work was conducted by the Isla de Mona Project in cooperation with the Departamento Recursos Naturales y Ambientales de Puerto Rico (DRNA), including contributions from many researchers and cavers volunteering from across the U.S and Puerto Rico in the course of 12 separate expeditions, spanning a 14 year period (1998 to 2013). Over 200 caves have been documented on the island to date, the majority of this inventory is composed of flank margin caves but also includes sea caves, pit caves and talus caves. The most extensive example of cave development on the island is Sistema Faro - a sprawling maze-like series of chambers formed within the eastern point of the island with over 40 cliffside entrances overlooking the Caribbean Sea. Detailed cartography and analysis of the geomorphology and development of the Sistema Faro has helped form a complex model of carbonate island cave development as a function of tectonic uplift, lithology, sea level changes, karst hydrogeology and cliff retreat. This communication examines the roles these controls have played in the genesis of the world's largest flank margin cave. (Author)

A review of factors affecting cave climates for hibernating bats in temperate North America

Science.gov (United States)

Roger W. Perry

2013-01-01

The fungal pathogen Geomyces destructans, which causes white-nose syndrome in bats, thrives in the cold and moist conditions found in caves where bats hibernate. To aid managers and researchers address this disease, an updated and accessible review of cave hibernacula and cave microclimates is presented. To maximize energy savings and reduce...

Eastern Cave- and Crevice-Dwelling Bats Potentially Impacted by USACE Reservoir Operations

National Research Council Canada - National Science Library

Martin, C.O

2002-01-01

...; Kasul, Martin, and Allen 2000). This note provides information on six species of forest bats that roost in caves or cave-like structures and potentially occur on Corps projects in the Eastern United States...

Pre-excavation studies of prehistoric cave sites by magnetic prospecting

Science.gov (United States)

Itkis., Sonia; Matskevich, Zinovii; Meshveliani, Tengiz

2014-05-01

Detailed magnetic survey was performed for caves study in Israel (1995-1996) within the framework of the Beit Shemesh Regional Project (Judean Shephelah). The experience accumulated in Israel we applied later (2010) in two Georgian prehistoric cave sites: Cherula and Kotias-Klde. The magnetic method is based on the contrast in magnetic properties between a target object (e.g., buried archaeological feature) and the host medium (i.e, the surrounding bedrock and soil). The feasibility of the magnetic method for cave revealing was evaluated by magnetic susceptibility (κ) measurements of surrounding soil and rocks, and archaeological features: stones making up the walls, ceramic fragments and cave fill. According to data obtained, the κ of soil within caves (cave fill) is higher than that of surrounding soil. The enhancement of cave fill κ occurs because processes associated with human habitation: repeated heating and accumulation of organic debris. Both these processes provide good conditions for the conversion of the iron oxide found within the soil to a strongly ferromagnetic form (Mullins, 1977; Maher, 1986; Dalan and Banerjee, 1998, Itkis and Eppelbaum, 1999; Itkis, 2003) The presence of highly magnetic ceramics in caves also enhances magnetic contrast between practically non-magnetic bed rock (chalk in Ramat Beit Shemesh Site (Israel) and limestone (Georgian sites) and the cave fill, increasing the potential of the magnetic method to reveal caves (Itkis, 2011). Based on magnetic survey results, an excavation revealed a cave with a large amount of well preserved pottery and finds typical of the Early Bronze Age. Both studied cave sites in Georgia were located in Chiatura region of Imeretia province. Cherula site is a karstic rockshelter with a single chamber, ca 100 sq. m. The site was briefly tested in 1970s'. The area excavated in 2010 went to the depth of 60 cm below the present day surface; the limestone bedrock was not reached. The excavation revealed

3D Volume and Morphology of Perennial Cave Ice and Related Geomorphological Models at Scăriloara Ice Cave, Romania, from Structure from Motion, Ground Penetrating Radar and Total Station Surveys

Science.gov (United States)

Hubbard, J.; Onac, B. P.; Kruse, S.; Forray, F. L.

2017-12-01

Research at Scăriloara Ice Cave has proceeded for over 150 years, primarily driven by the presence and paleoclimatic importance of the large perennial ice block and various ice speleothems located within its galleries. Previous observations of the ice block led to rudimentary volume estimates of 70,000 to 120,000 cubic meters (m3), prospectively placing it as one of the world's largest cave ice deposits. The cave morphology and the surface of the ice block are now recreated in a total station survey-validated 3D model, produced using Structure from Motion (SfM) software. With the total station survey and the novel use of ArcGIS tools, the SfM validation process is drastically simplified to produce a scaled, georeferenced, and photo-texturized 3D model of the cave environment with a root-mean-square error (RMSE) of 0.24 m. Furthermore, ground penetrating radar data was collected and spatially oriented with the total station survey to recreate the ice block basal surface and was combined with the SfM model to create a model of the ice block itself. The resulting ice block model has a volume of over 118,000 m3 with an uncertainty of 9.5%, with additional volumes left un-surveyed. The varying elevation of the ice block basal surface model reflect specific features of the cave roof, such as areas of enlargement, shafts, and potential joints, which offer further validation and inform theories on cave and ice genesis. Specifically, a large depression area was identified as a potential area of initial ice growth. Finally, an ice thickness map was produced that will aid in the designing of future ice coring projects. This methodology presents a powerful means to observe and accurately characterize and measure cave and cave ice morphologies with ease and affordability. Results further establish the significance of Scăriloara's ice block to paleoclimate research, provide insights into cave and ice block genesis, and aid future study design.

State-Space Inference and Learning with Gaussian Processes

OpenAIRE

Turner, R; Deisenroth, MP; Rasmussen, CE

2010-01-01

18.10.13 KB. Ok to add author version to spiral, authors hold copyright. State-space inference and learning with Gaussian processes (GPs) is an unsolved problem. We propose a new, general methodology for inference and learning in nonlinear state-space models that are described probabilistically by non-parametric GP models. We apply the expectation maximization algorithm to iterate between inference in the latent state-space and learning the parameters of the underlying GP dynamics model. C...

Assessment of network inference methods: how to cope with an underdetermined problem.

Directory of Open Access Journals (Sweden)

Caroline Siegenthaler

Full Text Available The inference of biological networks is an active research area in the field of systems biology. The number of network inference algorithms has grown tremendously in the last decade, underlining the importance of a fair assessment and comparison among these methods. Current assessments of the performance of an inference method typically involve the application of the algorithm to benchmark datasets and the comparison of the network predictions against the gold standard or reference networks. While the network inference problem is often deemed underdetermined, implying that the inference problem does not have a (unique solution, the consequences of such an attribute have not been rigorously taken into consideration. Here, we propose a new procedure for assessing the performance of gene regulatory network (GRN inference methods. The procedure takes into account the underdetermined nature of the inference problem, in which gene regulatory interactions that are inferable or non-inferable are determined based on causal inference. The assessment relies on a new definition of the confusion matrix, which excludes errors associated with non-inferable gene regulations. For demonstration purposes, the proposed assessment procedure is applied to the DREAM 4 In Silico Network Challenge. The results show a marked change in the ranking of participating methods when taking network inferability into account.

76 FR 42654 - Endangered and Threatened Wildlife and Plants; Petition To List Grand Canyon Cave Pseudoscorpion

Science.gov (United States)

2011-07-19

... from 1977 to 1978. Eight caves were examined including Babylon Cave, Crystal Forest Cave, Land's End...) describes examining the walls, ceilings, and floors for animals and invertebrates. He identified 12...

Hydrogeology of the Sterkfontein Cave System, Cradle of Humankind, South Africa

CSIR Research Space (South Africa)

Hobbs, Philip J

2017-09-01

Full Text Available A water level rise of almost 3 m in the space of two years in the Sterkfontein Cave system since late-2009 necessitated the re-routing of the tourist path through the cave to successively higher elevations on three occasions. It also raisedconcern...

The Astrobiology of the Subsurface: Exploring Cave Habitats on Earth, Mars and Beyond

Science.gov (United States)

Boston, Penelope Jane

2016-01-01

We are using the spectacular underground landscapes of Earth caves as models for the subsurfaces of other planets. Caves have been detected on the Moon and Mars and are strongly suspected for other bodies in the Solar System including some of the ice covered Ocean Worlds that orbit gas giant planets. The caves we explore and study include many extreme conditions of relevance to planetary astrobiology exploration including high and low temperatures, gas atmospheres poisonous to humans but where exotic microbes can flourish, highly acidic or salty fluids, heavy metals, and high background radiation levels. Some cave microorganisms eat their way through bedrock, some live in battery acid conditions, some produce unusual biominerals and rare cave formations, and many produce compounds of potential pharmaceutical and industrial significance. We study these unique lifeforms and the physical and chemical biosignatures that they leave behind. Such traces can be used to provide a "Field Guide to Unknown Organisms" for developing life detection space missions.

Potential collapse due to geological structures influence in Seropan Cave, Gunung Kidul, Yogyakarta, Indonesia

Science.gov (United States)

Nugroho, B.; Pranantya, P. A.; Witjahjati, R.; Rofinus

2018-01-01

This study aims to estimate the potential collapse in the Seropan cave, based on the existing geological structure conditions in the cave. This is very necessary because in the Seropan cave will be built Microhydro installation for power plants. The electricity will be used to raise the underground river water in the cave to a barren soil surface, which can be used for surface irrigation. The method used is analysis the quality of rock mass along the cave. Analysis of rock mass quality using Geomechanical Classification or Rock Mass Rating (RMR), to determine the magnitude of the effect of geological structure on rock mass stability. The research path is divided into several sections and quality analysis is performed on each section. The results show that the influence of geological structure is very large and along the cave where the research there are several places that have the potential to collapse, so need to get serious attention in handling it. Nevertheless, the construction of this Microhydro installation can still be carried out by making a reinforcement on potentially collapsing parts

Diversity of cultivable bacteria involved in the formation of macroscopic microbial colonies (Cave silver on the walls of a cave in Slovenia

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Blagajana Herzog Velikonja

2014-01-01

Full Text Available Karstic caves often support white, yellow, grey or pink microbial colonies that are termed ‘cave silver’ by speleologists. Using various sample pre-treatments and culture media, a wide variety of bacteria associated with these colonies were recovered from a cave in Slovenia, Pajsarjeva jama. Decreasing the inoculum size resulted in significant increases in viable counts, while pre-treatments had the opposite effect with the exception of microwave irradiation. While all growth media yielded viable counts, the maximal counts were observed on a low-nutrient TWA medium. Based on the 16S rRNA gene sequence of OTU representatives, the majority of the 80 isolates examined belonged to Streptomyces (25%, Micrococcus (16% and Rhodococcus (10% Other abundant groups were Pseudomonas (9%, Agrobacterium (8%, Lysobacter (6% and Paenibacillus (5%, while members of genera Microbacterium, Agrococcus, Arthrobacter, Bacillus, Kocuria, Oerskovia, Sphingomonas, Aerococcus, and Bosea represented a minor portion of cultivable diversity encountered. Members of Streptomyces and Agrobacterium were common to all samples. Although these microorganisms readily form colonies under laboratory conditions, they were unrelated to abundant environmental phylotypes recovered from same samples in a previous study. However, the comparative 16S rRNA analysis showed that microorganisms highly related to the ones obtained in this study were cultivated from other subterranean environments indicating that they might represent true microbial cave dwellers.

The NIFTY way of Bayesian signal inference

International Nuclear Information System (INIS)

Selig, Marco

2014-01-01

We introduce NIFTY, 'Numerical Information Field Theory', a software package for the development of Bayesian signal inference algorithms that operate independently from any underlying spatial grid and its resolution. A large number of Bayesian and Maximum Entropy methods for 1D signal reconstruction, 2D imaging, as well as 3D tomography, appear formally similar, but one often finds individualized implementations that are neither flexible nor easily transferable. Signal inference in the framework of NIFTY can be done in an abstract way, such that algorithms, prototyped in 1D, can be applied to real world problems in higher-dimensional settings. NIFTY as a versatile library is applicable and already has been applied in 1D, 2D, 3D and spherical settings. A recent application is the D 3 PO algorithm targeting the non-trivial task of denoising, deconvolving, and decomposing photon observations in high energy astronomy

The NIFTy way of Bayesian signal inference

Science.gov (United States)

Selig, Marco

2014-12-01

We introduce NIFTy, "Numerical Information Field Theory", a software package for the development of Bayesian signal inference algorithms that operate independently from any underlying spatial grid and its resolution. A large number of Bayesian and Maximum Entropy methods for 1D signal reconstruction, 2D imaging, as well as 3D tomography, appear formally similar, but one often finds individualized implementations that are neither flexible nor easily transferable. Signal inference in the framework of NIFTy can be done in an abstract way, such that algorithms, prototyped in 1D, can be applied to real world problems in higher-dimensional settings. NIFTy as a versatile library is applicable and already has been applied in 1D, 2D, 3D and spherical settings. A recent application is the D3PO algorithm targeting the non-trivial task of denoising, deconvolving, and decomposing photon observations in high energy astronomy.

Hotspot mitigation in the StarCAVE

KAUST Repository

Rhee, Jordan; Schulze, Jurgen; DeFanti, Thomas A.

2010-01-01

Rear-projected screens such as those in Digital Light Projection (DLP) televisions suffer from an image quality problem called hot spotting, where the image is brightest at a point dependent on the viewing angle. In rear-projected mulit-screen configurations such as the StarCAVE at Calit2, this causes discontinuities in brightness at the edges where screens meet, and thus in the 3D image perceived by the user. In the StarCAVE we know the viewer's position in 3D space and we have programmable graphics hardware, so we can mitigate this effect by performing post-processing in the inverse of the pattern, yielding a homogenous image at the output. Our implementation improves brightness homogeneity by a factor of 4 while decreasing frame rate by only 1-3 fps.

Hotspot mitigation in the StarCAVE

KAUST Repository

Rhee, Jordan

2010-01-27

Rear-projected screens such as those in Digital Light Projection (DLP) televisions suffer from an image quality problem called hot spotting, where the image is brightest at a point dependent on the viewing angle. In rear-projected mulit-screen configurations such as the StarCAVE at Calit2, this causes discontinuities in brightness at the edges where screens meet, and thus in the 3D image perceived by the user. In the StarCAVE we know the viewer\\'s position in 3D space and we have programmable graphics hardware, so we can mitigate this effect by performing post-processing in the inverse of the pattern, yielding a homogenous image at the output. Our implementation improves brightness homogeneity by a factor of 4 while decreasing frame rate by only 1-3 fps.

36 CFR 290.3 - Nomination, evaluation, and designation of significant caves.

Science.gov (United States)

2010-07-01

..., DEPARTMENT OF AGRICULTURE CAVE RESOURCES MANAGEMENT § 290.3 Nomination, evaluation, and designation of... on National Forest System lands shall possess one or more of the following features, characteristics... information. (4) Hydrologic. The cave is a part of a hydrologic system or contains water which is important to...

Report of a three-year monitoring programme at Heshang Cave, Central China

Directory of Open Access Journals (Sweden)

Chaoyong Hu

2008-10-01

Full Text Available Heshang Cave is situated in central China (30º27’N, 110º25’E; 294 m in the middle reaches of the Yangtze Valley, a region stronglyimpacted by the East Asian Monsoon. It contains large annually-laminated Holocene and late Pleistocene stalagmites which capture pastmonsoon behaviour with seasonal resolution, and could enhance understanding of the amplitude and frequency of monsoon behaviour indifferent climate states. In this paper, we present results of a 3-year monitoring programme at Heshang. T loggers outside the cave agree closely with T data from nearby meteorological stations. T at the site of growth of the largest recovered stalagmite averages 18ºC (identical to mean annual T outside the cave with a seasonal amplitude of 5ºC (about one fifth of the external cycle. Rainfall measurements from a station 3 km from the cave indicate strong summer monsoon rain in 2004 and 2005, but rather weaker summer rain (by ≈30% in 2006.Drip rate at the monitoring site has a base flow of 14 drips/minute and shows a sharp increase to ≈40 drips/minute early in the summerrains of 2004 and 2005, followed by a gradual return to base-flow as the monsoon weakens. This abrupt change presumably representsthreshold behaviour in the hydrological system. This threshold is not passed in 2006 and there is no abrupt increase in drip rate, indicating the sensitivity of this site (and presumably of speleothem chemistry in this cave to monsoon rainfall. Results are also reported from a 10-month deployment of a Stalagmate drip counter, and for CO2 levels in Heshang Cave. Overall, this monitoring work represents an essential dataset for interpretation of the chemistry of drip waters, of carbonates grown on glass slides and, ultimately, of long speleothem records of past climate from Heshang Cave.

Monitoring of radon gas in caves of the Yorkshire Dales, United Kingdom

International Nuclear Information System (INIS)

Langridge, D; Stokes, R P; Jackson, C P

2010-01-01

A number of vocational training courses are held in caves in the Yorkshire Dales region of the United Kingdom. The instructors and students involved in these courses have the potential to be exposed to enhanced levels of radon ( 222 Rn) and its progeny as a result of their occupations. A prior radiological risk assessment for the training courses recommended that an environmental monitoring programme be carried out to establish the radon concentrations in the caves, and that the caving instructors wear personal radon dosemeters. Radon gas concentrations varied seasonally, being at their highest in summer and their lowest in winter. The lowest result was 40 Bq m -3 recorded in Lower Longchurn cave during winter, whilst the highest result was 4440 Bq m -3 recorded in Crackpot cave during the summer. As the individuals involved in the caving are entering atmospheres with radon gas concentrations in excess of 400 Bq m -3 , the Ionising Radiation Regulations 1999 (GB Parliament 2000 Ionising Radiations Regulations 1999 (London: Stationary Office) SI 1999/3232) apply. A system of work is therefore in place to control exposure to radon. This system of work stipulates an initial dose investigation level of 1 mSv, a second dose investigation level of 2 mSv and an annual dose limit of 6 mSv. The highest annual dose recorded to date is 2.2 mSv, although the average (median) annual dose is only 0.5 mSv.

Meckel's cave access: anatomic study comparing the endoscopic transantral and endonasal approaches.

Science.gov (United States)

Van Rompaey, Jason; Suruliraj, Anand; Carrau, Ricardo; Panizza, Benedict; Solares, C Arturo

2014-04-01

Recent advances in endonasal endoscopy have facilitated the surgical access to the lateral skull base including areas such as Meckel's cave. This approach has been well documented, however, few studies have outlined transantral specific access to Meckel's. A transantral approach provides a direct pathway to this region obviating the need for extensive endonasal and transsphenoidal resection. Our aim in this study is to compare the anatomical perspectives obtained in endonasal and transantral approaches. We prepared 14 cadaveric specimens with intravascular injections of colored latex. Eight cadavers underwent endoscopic endonasal transpterygoid approaches to Meckel's cave. Six additional specimens underwent an endoscopic transantral approach to the same region. Photographic evidence was obtained for review. 30 CT scans were analyzed to measure comparative distances to Meckel's cave for both approaches. The endoscopic approaches provided a direct access to the anterior and inferior portions of Meckel's cave. However, the transantral approach required shorter instrumentation, and did not require clearing of the endonasal corridor. This approach gave an anterior view of Meckel's cave making posterior dissection more difficult. A transantral approach to Meckel's cave provides access similar to the endonasal approach with minimal invasiveness. Some of the morbidity associated with extensive endonasal resection could possibly be avoided. Better understanding of the complex skull base anatomy, from different perspectives, helps to improve current endoscopic skull base surgery and to develop new alternatives, consequently, leading to improvements in safety and efficacy.

Bayesian Inference Methods for Sparse Channel Estimation

DEFF Research Database (Denmark)

Pedersen, Niels Lovmand

2013-01-01

This thesis deals with sparse Bayesian learning (SBL) with application to radio channel estimation. As opposed to the classical approach for sparse signal representation, we focus on the problem of inferring complex signals. Our investigations within SBL constitute the basis for the development...... of Bayesian inference algorithms for sparse channel estimation. Sparse inference methods aim at finding the sparse representation of a signal given in some overcomplete dictionary of basis vectors. Within this context, one of our main contributions to the field of SBL is a hierarchical representation...... analysis of the complex prior representation, where we show that the ability to induce sparse estimates of a given prior heavily depends on the inference method used and, interestingly, whether real or complex variables are inferred. We also show that the Bayesian estimators derived from the proposed...

Guanophilic fungi in three caves of southwestern Puerto Rico

Directory of Open Access Journals (Sweden)

Nieves-Rivera Angel M.

2009-01-01

Full Text Available Fifty species of guanophilic (bat guano-loving fungi were isolated from field-collected samples within three caves in southwesternPuerto Rico; most were mitosporic fungi (23 species. The caves studied were Cueva La Tuna (Cabo Rojo, Cueva de Malano(Sistema de Los Chorros, San Germán, and Cueva Viento (El Convento Cave-Spring System, Guayanilla-Peñuelas. The mostconspicuous fungus by far was the zygomycete Circinella umbellata (Mucorales. Circinella umbellata dominated the bat guanoincubation chambers (Petri dishes lined with sterile filter paper moistened with sterile water at ambient laboratory conditions.Nineteen species of basidiomycetes (e.g., Ganoderma cf. resinaceum, Geastrum cf. minimum, Lepiota sp., Polyporus sp., Ramariasp. and three species of ascomycetes (Hypoxylon sp., Xylaria anisopleura, and X. kegeliana were also recorded. They were foundon soil, rotting leaves, bark and rotting wood, buried in bat guano located below natural skylights or sinkholes.

Application of Bayesian inference to stochastic analytic continuation

International Nuclear Information System (INIS)

Fuchs, S; Pruschke, T; Jarrell, M

2010-01-01

We present an algorithm for the analytic continuation of imaginary-time quantum Monte Carlo data. The algorithm is strictly based on principles of Bayesian statistical inference. It utilizes Monte Carlo simulations to calculate a weighted average of possible energy spectra. We apply the algorithm to imaginary-time quantum Monte Carlo data and compare the resulting energy spectra with those from a standard maximum entropy calculation.

Geological conditions of origin of the Potočka zijalka cave

Directory of Open Access Journals (Sweden)

Stanko Buser

2002-12-01

Full Text Available In the Potočka zijalka cave on Mt. Ol{eva in Southern Karavanke during excavation of cave sediments of Würm age that contain cultural remains of the Cromagnon Man also large amounts of gravel were before the Badenian transgression, from the Central Alps during Miocene.

Comparison of 3D point clouds produced by LIDAR and UAV photoscan in the Rochefort cave (Belgium)

Science.gov (United States)

Watlet, Arnaud; Triantafyllou, Antoine; Kaufmann, Olivier; Le Mouelic, Stéphane

2016-04-01

Amongst today's techniques that are able to produce 3D point clouds, LIDAR and UAV (Unmanned Aerial Vehicle) photogrammetry are probably the most commonly used. Both methods have their own advantages and limitations. LIDAR scans create high resolution and high precision 3D point clouds, but such methods are generally costly, especially for sporadic surveys. Compared to LIDAR, UAV (e.g. drones) are cheap and flexible to use in different kind of environments. Moreover, the photogrammetric processing workflow of digital images taken with UAV becomes easier with the rise of many affordable software packages (e.g. Agisoft, PhotoModeler3D, VisualSFM). We present here a challenging study made at the Rochefort Cave Laboratory (South Belgium) comprising surface and underground surveys. The site is located in the Belgian Variscan fold-and-thrust belt, a region that shows many karstic networks within Devonian limestone units. A LIDAR scan has been acquired in the main chamber of the cave (~ 15000 m³) to spatialize 3D point cloud of its inner walls and infer geological beds and structures. Even if the use of LIDAR instrument was not really comfortable in such caving environment, the collected data showed a remarkable precision according to few control points geometry. We also decided to perform another challenging survey of the same cave chamber by modelling a 3D point cloud using photogrammetry of a set of DSLR camera pictures taken from the ground and UAV pictures. The aim was to compare both techniques in terms of (i) implementation of data acquisition and processing, (ii) quality of resulting 3D points clouds (points density, field vs cloud recovery and points precision), (iii) their application for geological purposes. Through Rochefort case study, main conclusions are that LIDAR technique provides higher density point clouds with slightly higher precision than photogrammetry method. However, 3D data modeled by photogrammetry provide visible light spectral information

Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees.

Science.gov (United States)

Stolzer, Maureen; Lai, Han; Xu, Minli; Sathaye, Deepa; Vernot, Benjamin; Durand, Dannie

2012-09-15

Gene duplication (D), transfer (T), loss (L) and incomplete lineage sorting (I) are crucial to the evolution of gene families and the emergence of novel functions. The history of these events can be inferred via comparison of gene and species trees, a process called reconciliation, yet current reconciliation algorithms model only a subset of these evolutionary processes. We present an algorithm to reconcile a binary gene tree with a nonbinary species tree under a DTLI parsimony criterion. This is the first reconciliation algorithm to capture all four evolutionary processes driving tree incongruence and the first to reconcile non-binary species trees with a transfer model. Our algorithm infers all optimal solutions and reports complete, temporally feasible event histories, giving the gene and species lineages in which each event occurred. It is fixed-parameter tractable, with polytime complexity when the maximum species outdegree is fixed. Application of our algorithms to prokaryotic and eukaryotic data show that use of an incomplete event model has substantial impact on the events inferred and resulting biological conclusions. Our algorithms have been implemented in Notung, a freely available phylogenetic reconciliation software package, available at http://www.cs.cmu.edu/~durand/Notung. mstolzer@andrew.cmu.edu.

Likelihood-Based Inference of B Cell Clonal Families.

Directory of Open Access Journals (Sweden)

Duncan K Ralph

2016-10-01

Full Text Available The human immune system depends on a highly diverse collection of antibody-making B cells. B cell receptor sequence diversity is generated by a random recombination process called "rearrangement" forming progenitor B cells, then a Darwinian process of lineage diversification and selection called "affinity maturation." The resulting receptors can be sequenced in high throughput for research and diagnostics. Such a collection of sequences contains a mixture of various lineages, each of which may be quite numerous, or may consist of only a single member. As a step to understanding the process and result of this diversification, one may wish to reconstruct lineage membership, i.e. to cluster sampled sequences according to which came from the same rearrangement events. We call this clustering problem "clonal family inference." In this paper we describe and validate a likelihood-based framework for clonal family inference based on a multi-hidden Markov Model (multi-HMM framework for B cell receptor sequences. We describe an agglomerative algorithm to find a maximum likelihood clustering, two approximate algorithms with various trade-offs of speed versus accuracy, and a third, fast algorithm for finding specific lineages. We show that under simulation these algorithms greatly improve upon existing clonal family inference methods, and that they also give significantly different clusters than previous methods when applied to two real data sets.

A neuro-fuzzy inference system for sensor monitoring

International Nuclear Information System (INIS)

Na, Man Gyun

2001-01-01

A neuro-fuzzy inference system combined with the wavelet denoising, PCA (principal component analysis) and SPRT (sequential probability ratio test) methods has been developed to monitor the relevant sensor using the information of other sensors. The paramters of the neuro-fuzzy inference system which estimates the relevant sensor signal are optimized by a genetic algorithm and a least-squares algorithm. The wavelet denoising technique was applied to remove noise components in input signals into the neuro-fuzzy system. By reducing the dimension of an input space into the neuro-fuzzy system without losing a significant amount of information, the PCA was used to reduce the time necessary to train the neuro-fuzzy system, simplify the structure of the neuro-fuzzy inference system and also, make easy the selection of the input signals into the neuro-fuzzy system. By using the residual signals between the estimated signals and the measured signals, the SPRT is applied to detect whether the sensors are degraded or not. The proposed sensor-monitoring algorithm was verified through applications to the pressurizer water level, the pressurizer pressure, and the hot-leg temperature sensors in pressurized water reactors

A Framework for Aligning Instructional Design Strategies with Affordances of CAVE Immersive Virtual Reality Systems

Science.gov (United States)

Ritz, Leah T.; Buss, Alan R.

2016-01-01

Increasing availability of immersive virtual reality (IVR) systems, such as the Cave Automatic Virtual Environment (CAVE) and head-mounted displays, for use in education contexts is providing new opportunities and challenges for instructional designers. By highlighting the affordances of IVR specific to the CAVE, the authors emphasize the…

A Transcriptomic Analysis of Cave, Surface, and Hybrid Isopod Crustaceans of the Species Asellus aquaticus.

Directory of Open Access Journals (Sweden)

Bethany A Stahl

Full Text Available Cave animals, compared to surface-dwelling relatives, tend to have reduced eyes and pigment, longer appendages, and enhanced mechanosensory structures. Pressing questions include how certain cave-related traits are gained and lost, and if they originate through the same or different genetic programs in independent lineages. An excellent system for exploring these questions is the isopod, Asellus aquaticus. This species includes multiple cave and surface populations that have numerous morphological differences between them. A key feature is that hybrids between cave and surface individuals are viable, which enables genetic crosses and linkage analyses. Here, we advance this system by analyzing single animal transcriptomes of Asellus aquaticus. We use high throughput sequencing of non-normalized cDNA derived from the head of a surface-dwelling male, the head of a cave-dwelling male, the head of a hybrid male (produced by crossing a surface individual with a cave individual, and a pooled sample of surface embryos and hatchlings. Assembling reads from surface and cave head RNA pools yielded an integrated transcriptome comprised of 23,984 contigs. Using this integrated assembly as a reference transcriptome, we aligned reads from surface-, cave- and hybrid- head tissue and pooled surface embryos and hatchlings. Our approach identified 742 SNPs and placed four new candidate genes to an existing linkage map for A. aquaticus. In addition, we examined SNPs for allele-specific expression differences in the hybrid individual. All of these resources will facilitate identification of genes and associated changes responsible for cave adaptation in A. aquaticus and, in concert with analyses of other species, will inform our understanding of the evolutionary processes accompanying adaptation to the subterranean environment.

Fossil remains of the cave animal Marifugia cavatica in the unroofed cave in the Črnotiče quarry, W Slovenia

Directory of Open Access Journals (Sweden)

Andrej Mihevc

2002-12-01

Full Text Available The paper is a report on the discovery of tubes of a fossilised cave serpulid in a roofless cave in the quarry near village Črnotiče. The site and shape of the fossilised tubes are described. The animals lived attached to the scallops in the wall of the water filled passage. The passage was later filled with clay deposits, followed by a layer of sinter several metres thick. The roof of the passage has been removed by karst denudation and the sinter now reaches to the surface.Fragments of tubes of animals of various sizes have been preserved, attached to the rock wall; those tubes that grew at a right angle to the wall have broken off but been preserved in the sediment. In terms of their dimension and shape the tubes remind one of the tubes of the more recent cave serpulid Marifugia cavatica Absolon and Hrabe. Thedating of the nearby sediments by palaeomagnetic method show that the minimum age of the serpulids is 1.7 Ma, but greater age is more probable.

Phylogenetic diversity of fungal communities in areas accessible and not accessible to tourists in Naracoorte Caves.

Science.gov (United States)

Adetutu, Eric M; Thorpe, Krystal; Bourne, Steven; Cao, Xiangsheng; Shahsavari, Esmaeil; Kirby, Greg; Ball, Andrew S

2011-01-01

The fungal diversity in areas accessible and not accessible to tourists at UNESCO World Heritage-listed Naracoorte Caves was investigated with culture-dependent and culture-independent techniques for assistance in cave management protocol development. The caves were selected based on tourist numbers and configurations: Stick Tomato (open, high numbers), Alexandra (lockable openings, high numbers) and Strawhaven (control; no access). Culture-based survey revealed Ascomycota dominance irrespective of sampling area with Microascales (Trichurus sp.) being most frequently isolated. Some Hypocreales-like sequences belonging to Fusarium sp., Trichoderma sp. and Neonectria sp. (Stick Tomato) were cultured only from areas not accessible to tourists. These orders also were detected by DGGE assay irrespective of sampling area. The predominance of Ascomycota (especially Microascales) suggested their important ecological roles in these caves. Culture-independent analysis showed higher Shannon fungal diversity values (from ITS-based DGGE profiles) in tourist-accessible areas of these caves than in inaccessible areas with the fungal community banding patterns being substantially different in Stick Tomato Cave. Further investigations are needed to determine the cause of the differences in the fungal communities of Stick Tomato Cave, although cave-related factors such as use, configuration and sediment heterogeneity might have contributed to these differences.

SPEEDY: An Eclipse-based IDE for invariant inference

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David R. Cok

2014-04-01

Full Text Available SPEEDY is an Eclipse-based IDE for exploring techniques that assist users in generating correct specifications, particularly including invariant inference algorithms and tools. It integrates with several back-end tools that propose invariants and will incorporate published algorithms for inferring object and loop invariants. Though the architecture is language-neutral, current SPEEDY targets C programs. Building and using SPEEDY has confirmed earlier experience demonstrating the importance of showing and editing specifications in the IDEs that developers customarily use, automating as much of the production and checking of specifications as possible, and showing counterexample information directly in the source code editing environment. As in previous work, automation of specification checking is provided by back-end SMT solvers. However, reducing the effort demanded of software developers using formal methods also requires a GUI design that guides users in writing, reviewing, and correcting specifications and automates specification inference.

A cave population of Isbrueckerichthys alipionis (Gosline, 1947 in the Upper Ribeira karst area, southeastern Brazil (Siluriformes: Loricariidae

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Eleonora Trajano

Full Text Available A cave population of the armored catfish Isbrueckerichthys alipionis is reported from the Santana Cave, in the rio Betari watershed, Upper Ribeira karst area, Iporanga, São Paulo State, southeastern Brazil. The cave population was compared to an epigean population of I. alipionis and no significant differences where found in morphology or degree of pigmentation. As the cave population is known for at least 30 years and is apparently isolated from epigean streams, it is classified as troglophilic. The discovery of this troglophilic species in the Santana Cave is an additional strong argument for the conservation of that cave.

Effect of soil-rock system on speleothems weathering in Bailong Cave, Yunnan Province, China*

Science.gov (United States)

Wang, Jing; Song, Lin-hua

2005-01-01

Bailong Cave with its well-developed Middle Triassic calcareous dolomite’s system was opened as a show cave for visitors in 1988. The speleothem scenery has been strongly weathered as white powder on the outer layers. Study of the cave winds, permeability of soil-rock system and the chemical compositions of the dripping water indicated: (1) The cave dimension structure distinctively affects the cave winds, which were stronger at narrow places. (2) Based on the different soil grain size distribution, clay was the highest in composition in the soil. The response sense of dripping water to the rainwater percolation was slow. The density of joints and other openings in dolomite make the dolomite as mesh seepage body forming piles of thin and high columns and stalactites. (3) Study of 9 dripping water samples by HYDROWIN computer program showed that the major mineral in the water was dolomite. PMID:15682505

Bayesian inference for spatio-temporal spike-and-slab priors

DEFF Research Database (Denmark)

Andersen, Michael Riis; Vehtari, Aki; Winther, Ole

2017-01-01

a transformed Gaussian process on the spike-and-slab probabilities. An expectation propagation (EP) algorithm for posterior inference under the proposed model is derived. For large scale problems, the standard EP algorithm can be prohibitively slow. We therefore introduce three different approximation schemes...

Aspergillus baeticus sp. nov. and Aspergillus thesauricus sp. nov., two species in section Usti from Spanish caves.

Science.gov (United States)

Nováková, Alena; Hubka, Vit; Saiz-Jimenez, Cesareo; Kolarik, Miroslav

2012-11-01

Two novel species of Aspergillus that are clearly distinct from all known species in section Usti were revealed during a study of microfungal communities in Spanish caves. The novel species identified in this study and additional species of Aspergillus section Usti are associated with places and substrates related to human activities in caves. Novel species are described using data from four loci (ITS, benA, caM and rpb2), morphology and basic chemical and physiological analyses. Members of the species Aspergillus thesauricus sp. nov. were isolated from various substrates, including decaying organic matter, cave air and cave sediment of the Cueva del Tesoro Cave (the Treasure cave); the species is represented by twelve isolates and is most closely related to the recently described Aspergillus germanicus. Members of the species Aspergillus baeticus sp. nov. were isolated from cave sediment in the Gruta de las Maravillas Cave (the Grotto of the Marvels); the species is represented by two isolates. An additional isolate was found in the Cueva del Tesoro Cave and in the Demänovská Peace Cave (Slovakia), suggesting a potentially wide distribution of this micro-organism. The species is related to Aspergillus ustus and Aspergillus pseudoustus. Both species were unable to grow at 37 °C, and a weakly positive, light greenish yellow Ehrlich reaction was observed in A. thesauricus. Unique morphological features alone are sufficient to distinguish both species from related taxa.

Cova des Pas de Vallgornera, (Mallorca, Spain: history of exploration and cave description

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Antoni Merino

2014-05-01

Full Text Available The Cova des Pas de Vallgornera lies in the Llucmajor municipality, in southern Mallorca, and is the longest cave in the Balearic Islands. Currently its surveyed length is over 74,000 metres, including more than 17,000 of underwater extensions. The cave was discovered accidentally in 1968, but it was in 2004 when a major breakthrough shed light on its real extension and importance. The cave roughly shows two tiers of passages, apart from the underwater extensions, the first one is between 7 and 11 m above the mean sea level, the second one is about at the water table level. The importance of the cave is not only related to its extension, but also to the presence of a wide variety of speleothems and outstanding solutional morphologies that evidence a complex evolution. The cave is under the protection of Conselleria de Medi Ambient, Govern de les Illes Balears (the Regional Environmental Authority and was declared Site of Community Importance, within the Natura 2000 Network

Climatic control on the growth of gigantic gypsum crystals within hypogenic caves (Naica mine, Mexico)?

Science.gov (United States)

Garofalo, Paolo S.; Fricker, Mattias B.; Günther, Detlef; Forti, Paolo; Mercuri, Anna-Maria; Loreti, Mara; Capaccioni, Bruno

2010-01-01

Three hypogenic caves within the Naica mine of Mexico ( Cueva de los Cristales — CLC, Ojo de la Reina — OR, and Cueva de las Velas — CLV) host spectacular gypsum crystals up to 11 m in length. These caves are close to another shallow cave of the area ( Cueva de las Espadas — CLE), with which they cover a 160 m-deep vertical section of the local drainage basin. Similar to other hypogenic caves, all these caves lack a direct connection with the land surface and should be unrelated with climate. A record of multi-technique fluid inclusion data and pollen spectra from cave and mine gypsum indicates surprisingly that climatic changes occurring at Naica could have controlled fluid composition in these caves, and hence crystal growth. Microthermometry and LA-ICP-Mass Spectrometry of fluid inclusions indicate that the shallow, chemically peculiar, saline fluid (up to 7.7 eq. wt.%NaCl) of CLE could have formed from evaporation, during a dry and hot climatic period. The fluid of the deep caves was instead of low salinity (˜ 3.5 eq. wt.% NaCl) and chemically homogeneous, and was poorly affected by evaporation. We propose that mixing of these two fluids, generated at different depths of the Naica drainage basin, determined the stable supersaturation conditions for the gigantic gypsum crystals to grow. Fluid mixing was controlled by the hydraulic communication between CLE and the other deep caves, and must have taken place during cycles of warm-dry and fresh-wet climatic periods, which are known to have occurred in the region. Pollen grains from a 35 ka-old gypsum crystal of CLC corresponds to a fairly homogenous catchment basin made of a mixed broadleaf wet forest, which suggests precipitation during a fresh-wet climatic period and confirms our interpretation of the fluid inclusion data. The unusual combination of geological and geochemical factors of Naica suggests that other hypogenic caves found elsewhere may not host similar crystals. However, this work shows that

Reassessing Coxcatlan Cave and the early history of domesticated plants in Mesoamerica.

Science.gov (United States)

Smith, Bruce D

2005-07-05

Reanalysis and direct accelerator mass spectrometry radiocarbon dating of the cucurbit assemblage from Coxcatlan Cave provide information on the timing and sequence of the initial appearance of three domesticated plants in the Tehuacán Valley (Puebla, Mexico) and allow reassessment of the overall temporal context of plant domestication in Mexico. Cucurbita pepo is the earliest documented domesticate in the cave, dating to 7,920 calibrated calendrical (cal) years B.P. The bottle gourd (Lagenaria siceraria) is dated at 7,200 cal years B.P. Cucurbita argyrosperma does not appear until 2,065 cal years B.P. The earlier identification of Cucurbita moschata specimens is not confirmed. Seventy-one radiocarbon dates, including 23 accelerator mass spectrometry dates on cucurbits, provide ample evidence of postdepositional vertical displacement of organic materials in the western half of Coxcatlan Cave, but they also indicate that the eastern half of the cave was largely undisturbed.

Microhabitat use, population densities, and size distributions of sulfur cave-dwelling Poecilia mexicana.

Science.gov (United States)

Jourdan, Jonas; Bierbach, David; Riesch, Rüdiger; Schießl, Angela; Wigh, Adriana; Arias-Rodriguez, Lenin; Indy, Jeane Rimber; Klaus, Sebastian; Zimmer, Claudia; Plath, Martin

2014-01-01

The Cueva del Azufre in Tabasco, Mexico, is a nutrient-rich cave and its inhabitants need to cope with high levels of dissolved hydrogen sulfide and extreme hypoxia. One of the successful colonizers of this cave is the poeciliid fish Poecilia mexicana, which has received considerable attention as a model organism to examine evolutionary adaptations to extreme environmental conditions. Nonetheless, basic ecological data on the endemic cave molly population are still missing; here we aim to provide data on population densities, size class compositions and use of different microhabitats. We found high overall densities in the cave and highest densities at the middle part of the cave with more than 200 individuals per square meter. These sites have lower H2S concentrations compared to the inner parts where most large sulfide sources are located, but they are annually exposed to a religious harvesting ceremony of local Zoque people called La Pesca. We found a marked shift in size/age compositions towards an overabundance of smaller, juvenile fish at those sites. We discuss these findings in relation to several environmental gradients within the cave (i.e., differences in toxicity and lighting conditions), but we also tentatively argue that the annual fish harvest during a religious ceremony (La Pesca) locally diminishes competition (and possibly, cannibalism by large adults), which is followed by a phase of overcompensation of fish densities.

“Spray Technique: Tracing the Sketch Traditions of Limestone Cave in Lenggong, Perak”

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Yahaya Fatan Hamamah

2015-01-01

Full Text Available Archaeological research provides the widest opportunity for researchers to analyse various aspects and disciplines appropriate to the subject and the object of choice. Subject and object selection is the work of exploration artefacts found in particular sites and archaeological heritage. Exploration and excavation on of a world heritage site such as Lenggong enables researchers to uncover various archaeological artefacts that are rich and meaningful. To find evidence of the strength and benefits of an artefact, further studies on each artefact should be carried out continuously. This essay will track the wisdom of the ancient artists use to produce paintings in a limestone cave in Lenggong, Perak, using spray techniques. Some artefacts that are identified as cave paintings show a very interesting sketch technique that are unique and special. This essay will also examine some of the cave paintings in other caves in Perak and also other caves in several countries as comparison. Studies involving cave paintings in Malaysia are new compared to Western countries. Thus, the study of one of the technique which is spray technique can open the eyes of the audience to acknowledge and recognise the ancient heritage. It also hoped that this study is able to increase the body of knowledge that goes beyond the boundaries of the arts district and the country.

The Evaluation of a Motion Base Driving Simulator in a Cave at TACOM

National Research Council Canada - National Science Library

Mollenhauer, M. A; Romano, R. A; Brumm, B

2004-01-01

The purpose of this presentation is to describe the highlights of a research program designed to investigate the feasibility of creating a motion base driving simulator in a Cave Automatic Virtual Environment (CAVE...

Occupational exposure to radon in Australian Tourist Caves an Australian-wide study of radon levels

International Nuclear Information System (INIS)

Solomon, S.B.; Langroo, R.; Peggie, J.R.; Lyons, R.G.; James, J.M.

1996-02-01

The study described in this report sets out to determine which Australian show caves have long- term radon levels in excess of the proposed action level of 1000 Bq m -3 . The collaborative study between the Australian Radiation Laboratory (ARL), the University of Sydney and the University of Auckland, was carried out with the support of a Research Grant from Worksafe Australia. The aims of this study were to measure radon levels for each season over a period of one year, at representative sites in all developed show caves around Australia, to determine yearly average radon levels for each cave tour, based on these site measurements, to estimate the radiation doses to the tour guides employed in these caves, and to identify caves with radon concentrations in excess of the action level. (authors)

Estimation of deep infiltration in unsaturated limestone environments using cave lidar and drip count data

Science.gov (United States)

Mahmud, K.; Mariethoz, G.; Baker, A.; Treble, P. C.; Markowska, M.; McGuire, E.

2016-01-01

Limestone aeolianites constitute karstic aquifers covering much of the western and southern Australian coastal fringe. They are a key groundwater resource for a range of industries such as winery and tourism, and provide important ecosystem services such as habitat for stygofauna. Moreover, recharge estimation is important for understanding the water cycle, for contaminant transport, for water management, and for stalagmite-based paleoclimate reconstructions. Caves offer a natural inception point to observe both the long-term groundwater recharge and the preferential movement of water through the unsaturated zone of such limestone. With the availability of automated drip rate logging systems and remote sensing techniques, it is now possible to deploy the combination of these methods for larger-scale studies of infiltration processes within a cave. In this study, we utilize a spatial survey of automated cave drip monitoring in two large chambers of Golgotha Cave, south-western Western Australia (SWWA), with the aim of better understanding infiltration water movement and the relationship between infiltration, stalactite morphology, and unsaturated zone recharge. By applying morphological analysis of ceiling features from Terrestrial LiDAR (T-LiDAR) data, coupled with drip time series and climate data from 2012 to 2014, we demonstrate the nature of the relationships between infiltration through fractures in the limestone and unsaturated zone recharge. Similarities between drip rate time series are interpreted in terms of flow patterns, cave chamber morphology, and lithology. Moreover, we develop a new technique to estimate recharge in large-scale caves, engaging flow classification to determine the cave ceiling area covered by each flow category and drip data for the entire observation period, to calculate the total volume of cave discharge. This new technique can be applied to other cave sites to identify highly focussed areas of recharge and can help to better

The Astrobiology of the Subsurface: Caves and Rock Fracture Habitats on Earth, Mars and Beyond

Science.gov (United States)

Boston, Penelope J.

2017-01-01

The Astrobiology of the Subsurface: Exploring Cave Habitats on Earth, Mars and Beyond. We are using the spectacular underground landscapes of Earth caves as models for the subsurfaces of other planets. Caves have been detected on the Moon and Mars and are strongly suspected for other bodies in the Solar System including some of the ice covered Ocean Worlds that orbit gas giant planets. The caves we explore and study include many extreme conditions of relevance to planetary astrobiology exploration including high and low temperatures, gas atmospheres poisonous to humans but where exotic microbes can fluorish, highly acidic or salty fluids, heavy metals, and high background radiation levels. Some cave microorganisms eat their way through bedrock, some live in battery acid conditions, some produce unusual biominerals and rare cave formations, and many produce compounds of potential pharmaceutical and industrial significance. We study these unique lifeforms and the physical and chemical biosignatures that they leave behind. Such traces can be used to provide a Field Guide to Unknown Organisms for developing life detection space missions.

Technical devices of powered roof support for the top coal caving as automation objects

Science.gov (United States)

Nikitenko, M. S.; Kizilov, S. A.; Nikolaev, P. I.; Kuznetsov, I. S.

2018-05-01

In the paper technical devices for the top coal caving as automation objects in the composition of the longwall mining complex (LTCC) are considered. The proposed concept for automation of the top coal caving process allows caving efficiency to be ensured, coal dilution to be prevented, conveyor overloading to be prevented, the shearer service personnel to be unloaded, the influence of the “human factor” to be reduced.

Marine Caves of the Mediterranean Sea: A Sponge Biodiversity Reservoir within a Biodiversity Hotspot

Science.gov (United States)

Gerovasileiou, Vasilis; Voultsiadou, Eleni

2012-01-01

Marine caves are widely acknowledged for their unique biodiversity and constitute a typical feature of the Mediterranean coastline. Herein an attempt was made to evaluate the ecological significance of this particular ecosystem in the Mediterranean Sea, which is considered a biodiversity hotspot. This was accomplished by using Porifera, which dominate the rocky sublittoral substrata, as a reference group in a meta-analytical approach, combining primary research data from the Aegean Sea (eastern Mediterranean) with data derived from the literature. In total 311 species from all poriferan classes were recorded, representing 45.7% of the Mediterranean Porifera. Demospongiae and Homoscleromorpha are highly represented in marine caves at the family (88%), generic (70%), and species level (47.5%), the latter being the most favored group along with Dictyoceratida and Lithistida. Several rare and cave-exclusive species were reported from only one or few caves, indicating the fragmentation and peculiarity of this unique ecosystem. Species richness and phylogenetic diversity varied among Mediterranean areas; the former was positively correlated with research effort, being higher in the northern Mediterranean, while the latter was generally higher in caves than in the overall sponge assemblages of each area. Resemblance analysis among areas revealed that cavernicolous sponge assemblages followed a pattern quite similar to that of the overall Mediterranean assemblages. The same pattern was exhibited by the zoogeographic affinities of cave sponges: species with Atlanto-Mediterranean distribution and Mediterranean endemics prevailed (more than 40% each), 70% of them having warm-water affinities, since most caves were studied in shallow waters. According to our findings, Mediterranean marine caves appear to be important sponge biodiversity reservoirs of high representativeness and great scientific interest, deserving further detailed study and protection. PMID:22808070

Sensing Structures Inspired by Blind Cave Fish

Science.gov (United States)

McConney, Michael E.; Chen, Nannan; Lu, David; Anderson, Kyle D.; Hu, Huan; Liu, Chang; Tsukruk, Vladimir V.

2009-03-01

Blind cave fish, with degenerated non-functioning eyes, have evolved to ``see'' their hydrodynamic environment by using the flow receptors of the lateral line system. The hair-cell receptors are encapsulated in a hydrogel-like material, called a cupula, which increases the sensitivity of the hair-cell receptors by coupling their motion to the surrounding flowing media. We characterized the viscoelastic properties and of blind cave fish cupulae by using colloidal-probe spectroscopy in fluid. A photo-patternable hydrogel with similar properties was developed to mimic the fish receptor coupling structure. Flow-based measurements indicated that the hydrogels enhance drag through increased surface area, but also inherent material properties. These bio-inspired structures endowed micro-fabricated flow sensors with sensitivities rivaling that of fish.

Incidence of chromosomal aberrations and micronuclei in cave tour guides.

Science.gov (United States)

Bilban, M; Bilban-Jakopin, C; Vrhovec, S

2001-01-01

An analysis of structural chromosomal aberrations (SCA) and micronucleus tests (MN) were performed in 38 subjects, cave tour guides and in appropriate control group. The dominant type of chromosomal aberrations in tourist guides were chromosomal breaks (0.013 per cell) and acentric fragments (0.011 per cell). In the control group, these aberrations were present up to 0.008 on cells. Considering the analysed cells of the guides in total (33,556), the incidence of dicentric and rings range is below 0.0008 on cells, even though three dicentric and ring chromosoms were found already in the first 1000 in vitro metaphases of some guides. Only 0.0003 dicentrics and neither other translocations were found in control group (ambiental exposure). The incidence of micronuclei in cytokinesis blocked lymphocytes ranged from 12-32 per 500 CB cells in the cave tour guides and from 4-11 per 500 CB cells in control group. Measurements of radon and its daughters were performed at different locations in the cave. Annual doses from 40-60 mSv were estimated per 2000 work hours for cave guides. The changes found in the genome of somatic cells may be related to the exposure doses of radon and its daughters, although smoking should not be ignored.

Cave Conservation Priority Index to Adopt a Rapid Protection Strategy: A Case Study in Brazilian Atlantic Rain Forest

Science.gov (United States)

Souza Silva, Marconi; Martins, Rogério Parentoni; Ferreira, Rodrigo Lopes

2015-02-01

Cave environments are characterized by possessing specialized fauna living in high environmental stability with limited food conditions. These fauna are highly vulnerable to impacts, because this condition can frequently be easily altered. Moreover, environmental determinants of the biodiversity patterns of caves remain poorly understood and protected. Therefore, the main goal of this work is to propose a cave conservation priority index (CCPi) for a rapid assessment for troglobiotic and troglophile protection. Furthermore, the troglobiotic diversity, distribution and threats have been mapped in the Brazilian Atlantic forest. To propose the CCPi, the human impacts and richness of troglobiotic and troglophile species of 100 caves were associated. Data related to troglomorphic/troglobiotic fauna from another 200 caves were used to map the troglobiotic diversity and distribution. The CCPi reveals extremely high conservation priority for 15 % of the caves, high for 36 % and average for 46 % of the caves. Fourteen caves with extremely high priorities should have urgent conservation and management actions. The geographical distribution of the 221 known troglobiotic/troglomorphic species allowed us to select 19 karst areas that need conservation actions. Seven areas were considered to have urgent priority for conservation actions. The two richest areas correspond to the "iron quadrangle" with iron ore caves (67 spp.) and the "Açungui limestone group" (56 spp.). Both areas have several caves and are important aquifers. The use of the CCPi can prevent future losses because it helps assessors to select caves with priorities for conservation which should receive emergency attention in relation to protection, management and conservation actions.

Karst and Caves of the Black Hills, South Dakota, USA; Karst y cuevas de las Black Hills, Dakota del Sur, EE.UU

Energy Technology Data Exchange (ETDEWEB)

Palmer, A. N.

2016-07-01

The caves of the Black Hills are located in Carboniferous limestone and dolomite of the Madison Formation in western South Dakota. The climate is semi-arid, and surface karst features are few. Entrances to known caves are rather small, and the two largest caves, Wind Cave and Jewel Cave, were discovered only in the late 1880s and in 1900, respectively. Intermittent exploration and mapping have been conducted by local volunteers, National Park Service staff, and the National Speleological Society. Jewel Cave, in Jewel Cave National Monument, contains 290 km of mapped passages; and Wind Cave, in Wind Cave National Park, contains 230 km. They are the third and sixth longest known caves in the world. (Author)

Exposure of workers to radon progeny in the Baradla cave at Aggtelek

International Nuclear Information System (INIS)

Dezsoe, Z.

2004-01-01

By measuring the radon concentration using active technique in all parts of the cave visited in a tour and furthermore by assessing also the time spent at these locations, it is possible to determine the radon level averaged over a tour. The time averaged radon concentration along the route of the cave investigated has been estimated to 970 Bq/m 3 in summer and 410 Bq/m 3 in winter. We concluded that in 62 % of the year cave climate shows warm season and only in 38 % cold season Rn-levels. On this basis the yearly mean radon concentration averaged over the tour comes to 750 Bq/m3. This figure, however, should not be used to estimate exposure because the number of visitors is substantially higher in summer than in winter, so that the tour guides work much more in summer (about 750 tours) than in winter (about 270 tours). Taking this into account, the yearly mean Rn concentration is to 820 Bq/m 3 . Since the dose is delivered by radon progeny and not radon itself, one has to also assess the equilibrium factor representative in the cave. The data available in the literature show that F is always larger than under normal ambient conditions. Published values are between 0.5 - 0.8. As part of this work, several radon progeny concentration measurements have also been made in the Baradla cave at different locations. The results confirm the occurrence of high F-values in caves. Furthermore, the equilibrium factor is increased by the presence of humans (visitors or cavers). In the Virgin Cave, F = 0.5 - 0.6, which increases steadily to about 0.8 due to the activity of man. In this work, F = 0.8 has been used for the dose assessment. Using the ICRP 65 dosimetry model, exposure was calculated to be 4.04 mJhm 3 , which corresponds to an effective dose of 5.8 mSv. (P.A.)

Occupational exposure to radon in Australian Tourist Caves an Australian-wide study of radon levels

Energy Technology Data Exchange (ETDEWEB)

Solomon, S B; Langroo, R; Peggie, J R [Australian Radiation Laboratory. Yallambie, VIC (Australia); Lyons, R G [University of Auckland, Auckland, (New Zealand). Department of Physics; James, J M [University of Sydney, Sydney, NSW (Australia). Department of Chemisty

1996-02-01

The study described in this report sets out to determine which Australian show caves have long- term radon levels in excess of the proposed action level of 1000 Bq m{sup -3}. The collaborative study between the Australian Radiation Laboratory (ARL), the University of Sydney and the University of Auckland, was carried out with the support of a Research Grant from Worksafe Australia. The aims of this study were to measure radon levels for each season over a period of one year, at representative sites in all developed show caves around Australia, to determine yearly average radon levels for each cave tour, based on these site measurements, to estimate the radiation doses to the tour guides employed in these caves, and to identify caves with radon concentrations in excess of the action level. (authors) 7 refs., 10 tabs., 2 figs.

Concentration and stable carbon isotopic composition of CO2 in cave air of Postojnska jama, Slovenia

Directory of Open Access Journals (Sweden)

Magda Mandic

2013-09-01

Full Text Available Partial pressure of CO2 (pCO2 and its isotopic composition (δ13CairCO2 were measured in Postojnska jama, Slovenia, at 10 locations inside the cave and outside the cave during a one-year period. At all interior locations the pCO2 was higher and δ13CairCO2 lower than in the outside atmosphere. Strong seasonal fluctuations in both parameters were observed at locations deeper in the cave, which are isolated from the cave air circulation. By using a binary mixing model of two sources of CO2, one of them being the atmospheric CO2, we show that the excess of CO2 in the cave air has a δ13C value of -23.3 ± 0.7 ‰, in reasonable agreement with the previously measured soil-CO2 δ13C values. The stable isotope data suggest that soil CO2 is brought to the cave by drip water.

Invertebrate fossils from cave sediments: A new proxy for pre-Quaternary paleoenvironments

Czech Academy of Sciences Publication Activity Database

Moldovan, O.T.; Mihevc, A.; Miko, L.; Constantin, S.; Meleg, I. N.; Petculescu, A.; Bosák, Pavel

2011-01-01

Roč. 8, č. 7 (2011), s. 1825-1837 ISSN 1726-4170 R&D Projects: GA AV ČR IAA300130701 Institutional research plan: CEZ:AV0Z30130516 Keywords : fossil invertebrates * Oribatida * Pliocene/Pleistocene * caves * caves (Slovenia) Subject RIV: DB - Geology ; Mineralogy Impact factor: 3.859, year: 2011

Inferring Gene Regulatory Networks Using Conditional Regulation Pattern to Guide Candidate Genes.

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Fei Xiao

Full Text Available Combining path consistency (PC algorithms with conditional mutual information (CMI are widely used in reconstruction of gene regulatory networks. CMI has many advantages over Pearson correlation coefficient in measuring non-linear dependence to infer gene regulatory networks. It can also discriminate the direct regulations from indirect ones. However, it is still a challenge to select the conditional genes in an optimal way, which affects the performance and computation complexity of the PC algorithm. In this study, we develop a novel conditional mutual information-based algorithm, namely RPNI (Regulation Pattern based Network Inference, to infer gene regulatory networks. For conditional gene selection, we define the co-regulation pattern, indirect-regulation pattern and mixture-regulation pattern as three candidate patterns to guide the selection of candidate genes. To demonstrate the potential of our algorithm, we apply it to gene expression data from DREAM challenge. Experimental results show that RPNI outperforms existing conditional mutual information-based methods in both accuracy and time complexity for different sizes of gene samples. Furthermore, the robustness of our algorithm is demonstrated by noisy interference analysis using different types of noise.

Local adaptation and pronounced genetic differentiation in an extremophile fish, Poecilia mexicana, inhabiting a Mexican cave with toxic hydrogen sulphide.

Science.gov (United States)

Plath, M; Hauswaldt, J S; Moll, K; Tobler, M; García De León, F J; Schlupp, I; Tiedemann, R

2007-03-01

We investigated genetic differentiation and migration patterns in a small livebearing fish, Poecilia mexicana, inhabiting a sulfidic Mexican limestone cave (Cueva del Azufre). We examined fish from three different cave chambers, the sulfidic surface creek draining the cave (El Azufre) and a nearby surface creek without the toxic hydrogen sulphide (Arroyo Cristal). Using microsatellite analysis of 10 unlinked loci, we found pronounced genetic differentiation among the three major habitats: Arroyo Cristal, El Azufre and the cave. Genetic differentiation was also found within the cave between different pools. An estimation of first-generation migrants suggests that (i) migration is unidirectional, out of the cave, and (ii) migration among different cave chambers occurs to some extent. We investigated if the pattern of genetic differentiation is also reflected in a morphological trait, eye size. Relatively large eyes were found in surface habitats, small eyes in the anterior cave chambers, and the smallest eyes were detected in the innermost cave chamber (XIII). This pattern shows some congruence with a previously proposed morphocline in eye size. However, our data do not support the proposed mechanism for this morphocline, namely that it would be maintained by migration from both directions into the middle cave chambers. This would have led to an increased variance in eye size in the middle cave chambers, which we did not find. Restricted gene flow between the cave and the surface can be explained by local adaptations to extreme environmental conditions, namely H2S and absence of light. Within the cave system, habitat properties are patchy, and genetic differentiation between cave chambers despite migration could indicate local adaptation at an even smaller scale.

Algorithms for Bayesian network modeling and reliability assessment of infrastructure systems

International Nuclear Information System (INIS)

Tien, Iris; Der Kiureghian, Armen

2016-01-01

Novel algorithms are developed to enable the modeling of large, complex infrastructure systems as Bayesian networks (BNs). These include a compression algorithm that significantly reduces the memory storage required to construct the BN model, and an updating algorithm that performs inference on compressed matrices. These algorithms address one of the major obstacles to widespread use of BNs for system reliability assessment, namely the exponentially increasing amount of information that needs to be stored as the number of components in the system increases. The proposed compression and inference algorithms are described and applied to example systems to investigate their performance compared to that of existing algorithms. Orders of magnitude savings in memory storage requirement are demonstrated using the new algorithms, enabling BN modeling and reliability analysis of larger infrastructure systems. - Highlights: • Novel algorithms developed for Bayesian network modeling of infrastructure systems. • Algorithm presented to compress information in conditional probability tables. • Updating algorithm presented to perform inference on compressed matrices. • Algorithms applied to example systems to investigate their performance. • Orders of magnitude savings in memory storage requirement demonstrated.

Annual and transient signatures of gas exchange and transport in the Castañar de Ibor cave (Spain

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Fernandez-Cortes A.

2009-07-01

Full Text Available The large microclimatic stability is a basic characteristic of the subterranean karst systems and causes a high sensitivity to changesin environmental conditions. High-accuracy monitoring of Castañar de Ibor cave (Spain determined the temporal evolution of theaerodynamic processes and ventilation rate by tracking CO2 and 222Rn levels over a twelve-month period. This cave is characterizedby a very stable microclimate, with high and relatively constant radon content (the mean value is 32200 Bq/m3, roughly, and thestandard deviation is 7600 Bq/m3 and a moderate and quite stable CO2 concentration (the mean value is 3730 ppm and the standarddeviation is 250 ppm. Beside the general patterns of cave microclimate throughout an annual cycle, some particular microclimaticprocesses are described with regard to the gas exchange between the cave and the outside atmosphere. There is a complexmicroclimatic functional relationship between the meteorological and cave microclimate conditions and the diffusion and flow of tracergases from the fractures and the pore system of soil and host rock to cave atmosphere. Transient variations of tracer gas on cave airare controlled by natural barometric fluxes and anthropogenic forced ventilation due to uncontrolled opening of cave entrance. Theshort-term fluctuations of gas levels on cave air reveal distinct patterns during the exhalation process of theses gases from the netof fissures and pores to the cave atmosphere, depending on the isolation effect of soil and host rock.

The Unicorn Cave, Southern Harz Mountains, Germany: From known passages to unknown extensions with the help of geophysical surveys

Science.gov (United States)

Kaufmann, Georg; Nielbock, Ralf; Romanov, Douchko

2015-12-01

In soluble rocks (limestone, dolomite, anhydrite, gypsum, …), fissures and bedding partings can be enlarged with time by both physical and chemical dissolution of the host rock. With time, larger cavities evolve, and a network of cave passages can evolve. If the enlarged cave voids are not too deep under the surface, geophysical measurements can be used to detect, identify and trace these karst structures, e.g.: (i) gravity revealing air- and sediment-filled cave voids through negative Bouguer anomalies, (ii) electrical resistivity imaging (ERI) mapping different infillings of cavities either as high resistivities from air-filled voids or dry soft sediments, or low resistivities from saturated sediments, and (iii) groundwater flow through electrical potential differences (SP) arising from dislocated ionic charges from the walls of the underground flow paths. We have used gravity, ERI, and SP methods both in and above the Unicorn Cave located in the southern Harz Mountains in Germany. The Unicorn Cave is a show cave developed in the Werra dolomite formation of the Permian Zechstein sequence, characterised by large trunk passages interrupted by larger rooms. The overburden of the cave is only around 15 m, and passages are filled with sediments reaching infill thicknesses up to 40 m. We present results from our geophysical surveys above the known cave and its northern and southern extension, and from the cave interior. We identify the cave geometry and its infill from gravity and ERI measurements, predict previously unknown parts of the cave, and subsequently confirm the existence of these new passages through drilling. From the wealth of geophysical data acquired we derive a three-dimensional structural model of the Unicorn Cave and its surrounding, especially the cave infill.

Evolution of cave Axiokebuita and Speleobregma (Scalibregmatidae, Annelida)

DEFF Research Database (Denmark)

Martinez Garcia, Alejandro; Di Domenico, Maikon; Worsaae, Katrine

2013-01-01

The evolutionary history of Axiokebuita and Speleobregma, two poorly known lineages of annelids exclusive from deep-sea or marine caves but always from crevicular habitats, is explored here. Speleobregma lanzaroteum Bertelsen, 1986, and Axiokebuita cavernicola sp. n. are described from anchialine...... ciliated palps. Our results support two independent cave colonization events, favoured by the preadaptation of the members of Axiokebuita-Speleobregma lineage to crevicular habitats.......The evolutionary history of Axiokebuita and Speleobregma, two poorly known lineages of annelids exclusive from deep-sea or marine caves but always from crevicular habitats, is explored here. Speleobregma lanzaroteum Bertelsen, 1986, and Axiokebuita cavernicola sp. n. are described from anchialine...

Inferring nonlinear gene regulatory networks from gene expression data based on distance correlation.

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Xiaobo Guo

Full Text Available Nonlinear dependence is general in regulation mechanism of gene regulatory networks (GRNs. It is vital to properly measure or test nonlinear dependence from real data for reconstructing GRNs and understanding the complex regulatory mechanisms within the cellular system. A recently developed measurement called the distance correlation (DC has been shown powerful and computationally effective in nonlinear dependence for many situations. In this work, we incorporate the DC into inferring GRNs from the gene expression data without any underling distribution assumptions. We propose three DC-based GRNs inference algorithms: CLR-DC, MRNET-DC and REL-DC, and then compare them with the mutual information (MI-based algorithms by analyzing two simulated data: benchmark GRNs from the DREAM challenge and GRNs generated by SynTReN network generator, and an experimentally determined SOS DNA repair network in Escherichia coli. According to both the receiver operator characteristic (ROC curve and the precision-recall (PR curve, our proposed algorithms significantly outperform the MI-based algorithms in GRNs inference.

Long-term climate record inferred from early-middle Pleistocene amphibian and squamate reptile assemblages at the Gran Dolina Cave, Atapuerca, Spain.

Science.gov (United States)

Blain, Hugues-Alexandre; Bailon, Salvador; Cuenca-Bescós, Gloria; Arsuaga, Juan Luis; Bermúdez de Castro, José Maria; Carbonell, Eudald

2009-01-01

The Gran Dolina cave site is famous for having delivered some of the oldest hominin remains of Western Europe (Homo antecessor, ca. 960 ka). Moreover, the evidence of lithic industries throughout the long vertical section suggests occupation on the part of hominins from the latest early Pleistocene (levels TD3/4, TD5, and TD6) to the late middle Pleistocene (level TD10). The Gran Dolina Sondeo Sur (TDS) has furnished a great number of small-vertebrate remains; among them some 40,000 bones are attributed to amphibians and squamates. Although they do not differ specifically from the extant herpetofauna of the Iberian Peninsula, the overlap of their current distribution areas (= mutual climatic range method) in Spain can provide mean annual temperatures (MAT), the mean temperatures of the coldest (MTC) and warmest (MTW) months, and mean annual precipitation (MAP) estimations for each sub-level, and their change can be studied throughout the sequence. Results from the squamate and amphibian study indicate that during hominin occupation the MAT (10-13 degrees C) was always slightly warmer than at present in the vicinity of the Gran Dolina Cave, and the MAP (800-1000mm) was greater than today in the Burgos area. Climatic differences between "glacial" and "interglacial" phases are poorly marked. Summer temperatures (MTW) show stronger oscillations than winter temperatures (MTC), but seasonality remains almost unchanged throughout the sequence. These results are compared with those for large mammals, small mammals, and pollen analysis, giving a scenario for the palaeoclimatic conditions that occurred during the early to middle Pleistocene in Atapuerca, and hence a scenario for the hominins that once lived in the Sierra de Atapuerca.

Grouping preprocess for haplotype inference from SNP and CNV data

International Nuclear Information System (INIS)

Shindo, Hiroyuki; Chigira, Hiroshi; Nagaoka, Tomoyo; Inoue, Masato; Kamatani, Naoyuki

2009-01-01

The method of statistical haplotype inference is an indispensable technique in the field of medical science. The authors previously reported Hardy-Weinberg equilibrium-based haplotype inference that could manage single nucleotide polymorphism (SNP) data. We recently extended the method to cover copy number variation (CNV) data. Haplotype inference from mixed data is important because SNPs and CNVs are occasionally in linkage disequilibrium. The idea underlying the proposed method is simple, but the algorithm for it needs to be quite elaborate to reduce the calculation cost. Consequently, we have focused on the details on the algorithm in this study. Although the main advantage of the method is accuracy, in that it does not use any approximation, its main disadvantage is still the calculation cost, which is sometimes intractable for large data sets with missing values.

Grouping preprocess for haplotype inference from SNP and CNV data

Energy Technology Data Exchange (ETDEWEB)

Shindo, Hiroyuki; Chigira, Hiroshi; Nagaoka, Tomoyo; Inoue, Masato [Department of Electrical Engineering and Bioscience, School of Advanced Science and Engineering, Waseda University, 3-4-1, Okubo, Shinjuku-ku, Tokyo 169-8555 (Japan); Kamatani, Naoyuki, E-mail: masato.inoue@eb.waseda.ac.j [Institute of Rheumatology, Tokyo Women' s Medical University, 10-22, Kawada-cho, Shinjuku-ku, Tokyo 162-0054 (Japan)

2009-12-01

The method of statistical haplotype inference is an indispensable technique in the field of medical science. The authors previously reported Hardy-Weinberg equilibrium-based haplotype inference that could manage single nucleotide polymorphism (SNP) data. We recently extended the method to cover copy number variation (CNV) data. Haplotype inference from mixed data is important because SNPs and CNVs are occasionally in linkage disequilibrium. The idea underlying the proposed method is simple, but the algorithm for it needs to be quite elaborate to reduce the calculation cost. Consequently, we have focused on the details on the algorithm in this study. Although the main advantage of the method is accuracy, in that it does not use any approximation, its main disadvantage is still the calculation cost, which is sometimes intractable for large data sets with missing values.

GPU Computing in Bayesian Inference of Realized Stochastic Volatility Model

International Nuclear Information System (INIS)

Takaishi, Tetsuya

2015-01-01

The realized stochastic volatility (RSV) model that utilizes the realized volatility as additional information has been proposed to infer volatility of financial time series. We consider the Bayesian inference of the RSV model by the Hybrid Monte Carlo (HMC) algorithm. The HMC algorithm can be parallelized and thus performed on the GPU for speedup. The GPU code is developed with CUDA Fortran. We compare the computational time in performing the HMC algorithm on GPU (GTX 760) and CPU (Intel i7-4770 3.4GHz) and find that the GPU can be up to 17 times faster than the CPU. We also code the program with OpenACC and find that appropriate coding can achieve the similar speedup with CUDA Fortran

Reconstruction of bomb 14C time history recorded in the stalagmite from Postojna Cave

International Nuclear Information System (INIS)

Vokal, B.; Genty, D.; Obelic, B.

2002-01-01

The karstic caves provide valuable resources for reconstruction of environmental conditions on the continent in the past. This is possible due to the great stability of climatic conditions within a cave. Secondary minerals deposited in caves, known as speleothems, preserve records of long-term climatic and environmental changes at the site of their deposition and in the vicinity. The purity of speleothems and their chemical and physical stability make them exceptionally well suited for detailed geochemical and isotopic analysis

Environmental record in detrital cave sediments in the Botovskaya and Dolganskaya Jama caves (Russian Federation)

Czech Academy of Sciences Publication Activity Database

Lisá, Lenka; Kadlec, Jaroslav; Chadima, Martin; Hercman, H.; Oberhansli, H.; Osincev, A.

2006-01-01

Roč. 8, - (2006), A10273-A10273 ISSN 1029-7006. [European Geosciences Union General Assembly. 02.04.2006-07.04.2006, Vienna] Institutional research plan: CEZ:AV0Z30130516 Keywords : cave * sediments * micromorphology * magnetic properties * provenance Subject RIV: DB - Geology ; Mineralogy http://www.cosis.net/abstracts/EGU06/10273/EGU06-J-10273-2.pdf

Mamalia, Chiroptera, Vespertilionidae: Filling hibernacula distribution gaps for cave roosting bats from Iowa (U.S.A..

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Dixon, J. W.

2010-01-01

Full Text Available Adequate roost sites for hibernacula are an important factor in the distribution and abundance of temperate batspecies and knowledge of specific hibernacula is necessary to make sound management decisions. Caves are recognized asone of the most important roosting sites for bats, yet surveys in caves are uncommon in North America. This paper presentsdata on the distribution and abundance of bats hibernating in Iowa (U.S.A. caves and includes new hibernacula records.These are the first published records of bats in Iowa caves in almost 25 years.

Basaltic caves at Craters of the Moon National Monument and Preserve as analogs for Mars

Science.gov (United States)

Hinman, N. W.; Richardson, C. D.; McHenry, L.; Scott, J. R.

2010-12-01

Basaltic caves and lava tubes offer stable physicochemical conditions for formation of secondary minerals. Such features, putatively observed on Mars, intercept groundwater to weather country rock, leading to formation of secondary minerals. Further, caves are stable environments to search for evidence of past life, as they could offer protection from the oxidizing martian atmosphere. Searching for signs of life in a cave that could protect bio/organic compounds would preclude the need for risky drilling on Mars. Craters of the Moon National Monument (COM) offers an opportunity to study caves in Holocene iron-rich basalt flows to characterize secondary mineral deposits and search for organic compounds associated with secondary minerals; COM basalts are a good analog for martian basalts because of their high iron but other elements are higher at COM than on Mars. The Blue Dragon flow (~2.1 ka) contains the majority of the accessible caves and lava tubes. Two types of secondary mineral deposits were observed in these caves: ceiling coatings and crack or floor precipitates. Hematite, silica, and calcite comprise ceiling coatings. The crack and floor precipitates are white, efflorescent deposits in cavities along cave walls and ceilings or in localized mounds on cave floors. The secondary minerals in crack and floor precipitates are mainly thenardite and mirabilite with some minor concentrations of trona and/or burkeite. Organic compounds were found associated with the efflorescent deposits. Formation of the deposits is likely due to chemical leaching of basalt by meteoritic water. To test this, fluids collected from the ceiling and walls of the caves were analyzed. Solutions were modeled with the geochemical code, PHREEQC. The model tracked composition as water evaporated. Selected minerals were allowed to precipitate as they became oversaturated. Among the first minerals to become oversaturated were quartz and calcite, which are observed in ceiling deposits. Iron

Direct measurement of present-day tectonic movement and associated radon flux in Postojna Cave, Slovenia

Czech Academy of Sciences Publication Activity Database

Šebela, S.; Vaupotič, J.; Košťák, Blahoslav; Stemberk, Josef

2010-01-01

Roč. 72, č. 1 (2010), s. 21-34 ISSN 1090-6924 R&D Projects: GA ČR GA205/09/2024; GA MŠk MEB091005 Institutional research plan: CEZ:AV0Z30460519 Keywords : fault displacements * radon flux * Postojna Cave Subject RIV: DB - Geology ; Mineralogy Impact factor: 0.842, year: 2010 www.caves.org/pub/journal/Journal_of_Cave_and_Karst_Studies_volume_72.htm

THE STRUCTURE OF SOIL MESOFAUNA AND MACROFAUNA IN GRODA CAVE, GUNUNGKIDUL

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Andri Prasetyo

2016-10-01

  The number of soil macrofauna and mesofauna in Groda Cave can be used as an indicator of bats abundance since bat droppings are food for macrofauna and mesofauna soils. The purpose of this study are to determine the community structure of Groda Cave soil macrofauna and mesofauna  and its correlation with the content of N, P, K. The method used is the observation, taking of macrofauna and mesofauna soils using pit fall traps and tool green technique. Testing the N, P, K of the soil was conducted in Balai Pengkajian Teknologi Pertanian (BPTP Yogyakarta. The analysis technique used Shannon diversity index-Wienner, Margaleff wealth index, frequency of attendance of  macrofauna and mesofauna soils and its correlation with N, P, K of the land in Groda Cave. The results obtained are that six families mesofauna and 20 families macrofauna soils with moderate diversity index, the highest wealth index was in the Margaleff lit zone, the frequency of the highest attendance in the light zone is Formicidae (0.12, ie dim zones Isotomidae and Diptera (a brown (0.04 and the dark zone is Gryllacididae (0.05. The correlation showed the more the content of N, P, K, the fewer mesofauna and macrofauna soils were found. The uniqueness found in this study is the discovery of one species of Isotomidae in Groda Cave, which has been considered spreading only in Sulawesi, Sumatera, Bali, Lombok, Ternate and Papua.   Keywords: community structure, mesofauna soil, macrofauna soil, Groda Cave

Metis: A Pure Metropolis Markov Chain Monte Carlo Bayesian Inference Library

Energy Technology Data Exchange (ETDEWEB)

Bates, Cameron Russell [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Mckigney, Edward Allen [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

2018-01-09

The use of Bayesian inference in data analysis has become the standard for large scienti c experiments [1, 2]. The Monte Carlo Codes Group(XCP-3) at Los Alamos has developed a simple set of algorithms currently implemented in C++ and Python to easily perform at-prior Markov Chain Monte Carlo Bayesian inference with pure Metropolis sampling. These implementations are designed to be user friendly and extensible for customization based on speci c application requirements. This document describes the algorithmic choices made and presents two use cases.

Personalized recommendation via unbalance full-connectivity inference

Science.gov (United States)

Ma, Wenping; Ren, Chen; Wu, Yue; Wang, Shanfeng; Feng, Xiang

2017-10-01

Recommender systems play an important role to help us to find useful information. They are widely used by most e-commerce web sites to push the potential items to individual user according to purchase history. Network-based recommendation algorithms are popular and effective in recommendation, which use two types of elements to represent users and items respectively. In this paper, based on consistence-based inference (CBI) algorithm, we propose a novel network-based algorithm, in which users and items are recognized with no difference. The proposed algorithm also uses information diffusion to find the relationship between users and items. Different from traditional network-based recommendation algorithms, information diffusion initializes from users and items, respectively. Experiments show that the proposed algorithm is effective compared with traditional network-based recommendation algorithms.

Radon Concentration in Caves of Croatia - Assesing Effective Radon Doses for Occupational Workers and Visitors

International Nuclear Information System (INIS)

Radolic, V.; Miklavcic, I.; Poje, M.; Stanic, D.; Vukovic, B.; Paar, D.

2011-01-01

Radon monitoring at potentially highly radioactive location such as caves is important to assess the radiological hazards to occupational workers and occasional visitors. In its Publication 65 the ICRP has produced recommendations dealing with exposure to elevated background radiation, in particular, the risk associated with the inhalation of radon and radon progeny. Recommended annual effective dose from radon 222Rn and its short-lived progeny for workers should not exceed 20 mSv and for occasional users (visitors) the same recommendation is 1 mSv. Measurements were performed with series of track etched detectors (LR115 - type II) in several caves in Croatia. The obtained values for the radon concentration ranged from ambient values up to several thousand Bq m -3 . Radon concentration was measured in about 20 caves of Velebit and Zumberak mountains and the highest radon concentration was in Lubuska jama (3.8 kBq m -3 ) and cave Dolaca (21.8 kBq m -3 ), respectively. Djurovica cave is especially interesting because of its huge tourist potential due to its location bellow Dubrovnik airport. Its mean annual radon concentration of 17.6 kBq m -3 classifies Djurovica cave among caves with high radon concentration. A visitor during half an hour visit at summer time would receive an effective dose of 30.6 μSv. Calculated mean dose rate of 44 μSv/h means that workers (mainly tourist guides) should limit their time inside cave to 454 hours per year. Manita pec is the only cave open for tourists on the territory of Paklenica National Park. The preliminary radon measurements performed during summer 2010, gave an average radon concentration of 1.1 kBq m -3 . An exposure to average dose rate of 3.7 μSv/h means that the tourist guides would receive an effective dose of 0.42 mSv during summer period according to their working schedule. A visitor during half an hour visits would receive an effective dose of 1.86 μSv. (author)

Recursive algorithms for phylogenetic tree counting.

Science.gov (United States)

Gavryushkina, Alexandra; Welch, David; Drummond, Alexei J

2013-10-28

In Bayesian phylogenetic inference we are interested in distributions over a space of trees. The number of trees in a tree space is an important characteristic of the space and is useful for specifying prior distributions. When all samples come from the same time point and no prior information available on divergence times, the tree counting problem is easy. However, when fossil evidence is used in the inference to constrain the tree or data are sampled serially, new tree spaces arise and counting the number of trees is more difficult. We describe an algorithm that is polynomial in the number of sampled individuals for counting of resolutions of a constraint tree assuming that the number of constraints is fixed. We generalise this algorithm to counting resolutions of a fully ranked constraint tree. We describe a quadratic algorithm for counting the number of possible fully ranked trees on n sampled individuals. We introduce a new type of tree, called a fully ranked tree with sampled ancestors, and describe a cubic time algorithm for counting the number of such trees on n sampled individuals. These algorithms should be employed for Bayesian Markov chain Monte Carlo inference when fossil data are included or data are serially sampled.

A Network Inference Workflow Applied to Virulence-Related Processes in Salmonella typhimurium

Energy Technology Data Exchange (ETDEWEB)

Taylor, Ronald C.; Singhal, Mudita; Weller, Jennifer B.; Khoshnevis, Saeed; Shi, Liang; McDermott, Jason E.

2009-04-20

Inference of the structure of mRNA transcriptional regulatory networks, protein regulatory or interaction networks, and protein activation/inactivation-based signal transduction networks are critical tasks in systems biology. In this article we discuss a workflow for the reconstruction of parts of the transcriptional regulatory network of the pathogenic bacterium Salmonella typhimurium based on the information contained in sets of microarray gene expression data now available for that organism, and describe our results obtained by following this workflow. The primary tool is one of the network inference algorithms deployed in the Software Environment for BIological Network Inference (SEBINI). Specifically, we selected the algorithm called Context Likelihood of Relatedness (CLR), which uses the mutual information contained in the gene expression data to infer regulatory connections. The associated analysis pipeline automatically stores the inferred edges from the CLR runs within SEBINI and, upon request, transfers the inferred edges into either Cytoscape or the plug-in Collective Analysis of Biological of Biological Interaction Networks (CABIN) tool for further post-analysis of the inferred regulatory edges. The following article presents the outcome of this workflow, as well as the protocols followed for microarray data collection, data cleansing, and network inference. Our analysis revealed several interesting interactions, functional groups, metabolic pathways, and regulons in S. typhimurium.

Classical methods for interpreting objective function minimization as intelligent inference

Energy Technology Data Exchange (ETDEWEB)

Golden, R.M. [Univ. of Texas, Dallas, TX (United States)

1996-12-31

Most recognition algorithms and neural networks can be formally viewed as seeking a minimum value of an appropriate objective function during either classification or learning phases. The goal of this paper is to argue that in order to show a recognition algorithm is making intelligent inferences, it is not sufficient to show that the recognition algorithm is computing (or trying to compute) the global minimum of some objective function. One must explicitly define a {open_quotes}relational system{close_quotes} for the recognition algorithm or neural network which identifies the: (i) sample space, (ii) the relevant sigmafield of events generated by the sample space, and (iii) the {open_quotes}relation{close_quotes} for that relational system. Only when such a {open_quotes}relational system{close_quotes} is properly defined, is it possible to formally establish the sense in which computing the global minimum of an objective function is an intelligent, inference.

Detection of Cheating by Decimation Algorithm

Science.gov (United States)

Yamanaka, Shogo; Ohzeki, Masayuki; Decelle, Aurélien

2015-02-01

We expand the item response theory to study the case of "cheating students" for a set of exams, trying to detect them by applying a greedy algorithm of inference. This extended model is closely related to the Boltzmann machine learning. In this paper we aim to infer the correct biases and interactions of our model by considering a relatively small number of sets of training data. Nevertheless, the greedy algorithm that we employed in the present study exhibits good performance with a few number of training data. The key point is the sparseness of the interactions in our problem in the context of the Boltzmann machine learning: the existence of cheating students is expected to be very rare (possibly even in real world). We compare a standard approach to infer the sparse interactions in the Boltzmann machine learning to our greedy algorithm and we find the latter to be superior in several aspects.

Optimal inverse magnetorheological damper modeling using shuffled frog-leaping algorithm–based adaptive neuro-fuzzy inference system approach

Directory of Open Access Journals (Sweden)

Xiufang Lin

2016-08-01

Full Text Available Magnetorheological dampers have become prominent semi-active control devices for vibration mitigation of structures which are subjected to severe loads. However, the damping force cannot be controlled directly due to the inherent nonlinear characteristics of the magnetorheological dampers. Therefore, for fully exploiting the capabilities of the magnetorheological dampers, one of the challenging aspects is to develop an accurate inverse model which can appropriately predict the input voltage to control the damping force. In this article, a hybrid modeling strategy combining shuffled frog-leaping algorithm and adaptive-network-based fuzzy inference system is proposed to model the inverse dynamic characteristics of the magnetorheological dampers for improving the modeling accuracy. The shuffled frog-leaping algorithm is employed to optimize the premise parameters of the adaptive-network-based fuzzy inference system while the consequent parameters are tuned by a least square estimation method, here known as shuffled frog-leaping algorithm-based adaptive-network-based fuzzy inference system approach. To evaluate the effectiveness of the proposed approach, the inverse modeling results based on the shuffled frog-leaping algorithm-based adaptive-network-based fuzzy inference system approach are compared with those based on the adaptive-network-based fuzzy inference system and genetic algorithm–based adaptive-network-based fuzzy inference system approaches. Analysis of variance test is carried out to statistically compare the performance of the proposed methods and the results demonstrate that the shuffled frog-leaping algorithm-based adaptive-network-based fuzzy inference system strategy outperforms the other two methods in terms of modeling (training accuracy and checking accuracy.

Stability numerical analysis of soil cave in karst area to drawdown of underground water level

Science.gov (United States)

Mo, Yizheng; Xiao, Rencheng; Deng, Zongwei

2018-05-01

With the underground water level falling, the reliable estimates of the stability and deformation characteristics of soil caves in karst region area are required for analysis used for engineering design. Aimed at this goal, combined with practical engineering and field geotechnical test, detail analysis on vertical maximum displacement of top, vertical maximum displacement of surface, maximum principal stress and maximum shear stress were conducted by finite element software, with an emphasis on two varying factors: the size and the depth of soil cave. The calculations on the soil cave show that, its stability of soil cave is affected by both the size and depth, and only when extending a certain limit, the collapse occurred along with the falling of underground water; Additionally, its maximum shear stress is in arch toes, and its deformation curve trend of maximum displacement is similar to the maximum shear stress, which further verified that the collapse of soil cave was mainly due to shear-failure.

Inferring the conservative causal core of gene regulatory networks

Directory of Open Access Journals (Sweden)

Emmert-Streib Frank

2010-09-01

Full Text Available Abstract Background Inferring gene regulatory networks from large-scale expression data is an important problem that received much attention in recent years. These networks have the potential to gain insights into causal molecular interactions of biological processes. Hence, from a methodological point of view, reliable estimation methods based on observational data are needed to approach this problem practically. Results In this paper, we introduce a novel gene regulatory network inference (GRNI algorithm, called C3NET. We compare C3NET with four well known methods, ARACNE, CLR, MRNET and RN, conducting in-depth numerical ensemble simulations and demonstrate also for biological expression data from E. coli that C3NET performs consistently better than the best known GRNI methods in the literature. In addition, it has also a low computational complexity. Since C3NET is based on estimates of mutual information values in conjunction with a maximization step, our numerical investigations demonstrate that our inference algorithm exploits causal structural information in the data efficiently. Conclusions For systems biology to succeed in the long run, it is of crucial importance to establish methods that extract large-scale gene networks from high-throughput data that reflect the underlying causal interactions among genes or gene products. Our method can contribute to this endeavor by demonstrating that an inference algorithm with a neat design permits not only a more intuitive and possibly biological interpretation of its working mechanism but can also result in superior results.

Inferring the conservative causal core of gene regulatory networks.

Science.gov (United States)

Altay, Gökmen; Emmert-Streib, Frank

2010-09-28

Inferring gene regulatory networks from large-scale expression data is an important problem that received much attention in recent years. These networks have the potential to gain insights into causal molecular interactions of biological processes. Hence, from a methodological point of view, reliable estimation methods based on observational data are needed to approach this problem practically. In this paper, we introduce a novel gene regulatory network inference (GRNI) algorithm, called C3NET. We compare C3NET with four well known methods, ARACNE, CLR, MRNET and RN, conducting in-depth numerical ensemble simulations and demonstrate also for biological expression data from E. coli that C3NET performs consistently better than the best known GRNI methods in the literature. In addition, it has also a low computational complexity. Since C3NET is based on estimates of mutual information values in conjunction with a maximization step, our numerical investigations demonstrate that our inference algorithm exploits causal structural information in the data efficiently. For systems biology to succeed in the long run, it is of crucial importance to establish methods that extract large-scale gene networks from high-throughput data that reflect the underlying causal interactions among genes or gene products. Our method can contribute to this endeavor by demonstrating that an inference algorithm with a neat design permits not only a more intuitive and possibly biological interpretation of its working mechanism but can also result in superior results.

General Purpose Probabilistic Programming Platform with Effective Stochastic Inference

Science.gov (United States)

2018-04-01

REFERENCES 74 LIST OF ACRONYMS 80 ii List of Figures Figure 1. The problem of inferring curves from data while simultaneously choosing the...bottom path) as the inverse problem to computer graphics (top path). ........ 18 Figure 18. An illustration of generative probabilistic graphics for 3D...Building these systems involves simultaneously developing mathematical models, inference algorithms and optimized software implementations. Small changes

Steppe lion remains imported by Ice Age spotted hyenas into the Late Pleistocene Perick Caves hyena den in northern Germany

Science.gov (United States)

Diedrich, Cajus G.

2009-05-01

Upper Pleistocene remains of the Ice Age steppe lion Panthera leo spelaea (Goldfuss, 1810) have been found in the Perick Caves, Sauerland Karst, NW Germany. Bones from many hyenas and their imported prey dating from the Lower to Middle Weichselian have also been recovered from the Perick Cave hyena den. These are commonly cracked or exhibit deep chew marks. The absence of lion cub bones, in contrast to hyena and cave bear cub remains in the Perick Caves, and other caves of northern Germany, excludes the possibility that P. leo spelaea used the cave for raising cubs. Only in the Wilhelms Cave was a single skeleton of a cub found in a hyena den. Evidence of the chewing, nibbling and cracking of lion bones and crania must have resulted from the importation and destruction of lion carcasses (4% of the prey fauna). Similar evidence was preserved at other hyena den caves and open air sites in Germany. The bone material from the Perick and other Central European caves points to antagonistic hyena and lion conflicts, similar to clashes of their modern African relatives.

Predicting the Occurrence of Cave-Inhabiting Fauna Based on Features of the Earth Surface Environment.

Science.gov (United States)

Christman, Mary C; Doctor, Daniel H; Niemiller, Matthew L; Weary, David J; Young, John A; Zigler, Kirk S; Culver, David C

2016-01-01

One of the most challenging fauna to study in situ is the obligate cave fauna because of the difficulty of sampling. Cave-limited species display patchy and restricted distributions, but it is often unclear whether the observed distribution is a sampling artifact or a true restriction in range. Further, the drivers of the distribution could be local environmental conditions, such as cave humidity, or they could be associated with surface features that are surrogates for cave conditions. If surface features can be used to predict the distribution of important cave taxa, then conservation management is more easily obtained. We examined the hypothesis that the presence of major faunal groups of cave obligate species could be predicted based on features of the earth surface. Georeferenced records of cave obligate amphipods, crayfish, fish, isopods, beetles, millipedes, pseudoscorpions, spiders, and springtails within the area of Appalachian Landscape Conservation Cooperative in the eastern United States (Illinois to Virginia and New York to Alabama) were assigned to 20 x 20 km grid cells. Habitat suitability for these faunal groups was modeled using logistic regression with twenty predictor variables within each grid cell, such as percent karst, soil features, temperature, precipitation, and elevation. Models successfully predicted the presence of a group greater than 65% of the time (mean = 88%) for the presence of single grid cell endemics, and for all faunal groups except pseudoscorpions. The most common predictor variables were latitude, percent karst, and the standard deviation of the Topographic Position Index (TPI), a measure of landscape rugosity within each grid cell. The overall success of these models points to a number of important connections between the surface and cave environments, and some of these, especially soil features and topographic variability, suggest new research directions. These models should prove to be useful tools in predicting the

Using the CAVE virtual-reality environment as an aid to 3-D electromagnetic field computation

International Nuclear Information System (INIS)

Turner, L.R.; Levine, D.; Huang, M.; Papka, M.

1995-01-01

One of the major problems in three-dimensional (3-D) field computation is visualizing the resulting 3-D field distributions. A virtual-reality environment, such as the CAVE, (CAVE Automatic Virtual Environment) is helping to overcome this problem, thus making the results of computation more usable for designers and users of magnets and other electromagnetic devices. As a demonstration of the capabilities of the CAVE, the elliptical multipole wiggler (EMW), an insertion device being designed for the Advanced Photon Source (APS) now being commissioned at Argonne National Laboratory (ANL), wa made visible, along with its fields and beam orbits. Other uses of the CAVE in preprocessing and postprocessing computation for electromagnetic applications are also discussed

Coalescent-based species tree inference from gene tree topologies under incomplete lineage sorting by maximum likelihood.

Science.gov (United States)

Wu, Yufeng

2012-03-01

Incomplete lineage sorting can cause incongruence between the phylogenetic history of genes (the gene tree) and that of the species (the species tree), which can complicate the inference of phylogenies. In this article, I present a new coalescent-based algorithm for species tree inference with maximum likelihood. I first describe an improved method for computing the probability of a gene tree topology given a species tree, which is much faster than an existing algorithm by Degnan and Salter (2005). Based on this method, I develop a practical algorithm that takes a set of gene tree topologies and infers species trees with maximum likelihood. This algorithm searches for the best species tree by starting from initial species trees and performing heuristic search to obtain better trees with higher likelihood. This algorithm, called STELLS (which stands for Species Tree InfErence with Likelihood for Lineage Sorting), has been implemented in a program that is downloadable from the author's web page. The simulation results show that the STELLS algorithm is more accurate than an existing maximum likelihood method for many datasets, especially when there is noise in gene trees. I also show that the STELLS algorithm is efficient and can be applied to real biological datasets. © 2011 The Author. Evolution© 2011 The Society for the Study of Evolution.

Measurement of Stock Market Liquidity Supported By an Algorithm Inferring the Initiator of a Trade

Directory of Open Access Journals (Sweden)

Joanna Olbryś

2017-01-01

Full Text Available The aim of this study is to assess and analyse selected liquidity/illiquidity measures derived from high-frequency intraday data from the Warsaw Stock Exchange (WSE. As the side initiating a trade cannot be directly identified from a raw data set, firstly the Lee-Ready algorithm for inferring the initiator of a trade is employed to distinguish between so-called buyer- and seller-initiated trades. Intraday data for fifty-three WSE-listed companies divided into three size groups cover the period from January 3, 2005 to June 30, 2015. The paper provides an analysis of the robustness of the obtained results with respect to the whole sample and three consecutive subsamples, each of equal size: covering the precrisis, crisis, and post-crisis periods. The empirical results turn out to be robust to the choice of the period. Furthermore, hypotheses concerning the statistical significance of coefficients of correlation between the daily values of three liquidity proxies used in the study are tested. (original abstract

Blow Hole Cave: An unroofed cave on San Salvador Island, the Bahamas, and its importance for detection of paleokarst caves on fossil carbonate platforms

Czech Academy of Sciences Publication Activity Database

Bosák, Pavel; Mylroie, J. E.; Hladil, Jindřich; Carew, J. L.; Slavík, Ladislav

2002-01-01

Roč. 31, č. 3 (2002), s. 51-74 ISSN 0583-6050. [Karstological School - Classical Karst: Types of Karst /10./. Pstojna, 26.06.2002-28.06.2002] R&D Projects: GA AV ČR IAA3013809; GA AV ČR IAA3013209 Keywords : carbonate platforms * unroofed caves * gamma-ray spectrometry and wellogging Subject RIV: DB - Geology ; Mineralogy http://carsologica.zrc-sazu.si/downloads/313/slavik.pdf

Simulated effects of increased groundwater withdrawals in the Cave Springs area, Hixson, Tennessee

Science.gov (United States)

Haugh, Connor J.

2014-01-01

Concern for future water supplies in Tennessee has grown in recent years as a result of increased awareness of competing needs, the impact of droughts, and the need for more water to support growing populations. The U.S. Geological Survey conducts investigations to improve the knowledge about interactions of geology, climate, humans, and ecosystems with the water cycle, which is critical to understanding and optimizing water availability. The Hixson Utility District in Hamilton County, Tennessee, uses groundwater resources in the Cave Springs area as a water supply, withdrawing water from two well fields located at Cave Springs and Walkers Corner. Historically, Hixson Utility District has withdrawn about 5 million gallons per day (Mgal/d) at the Cave Springs well field and between 2 and 3 Mgal/d at the Walkers Corner well field. To assess the capacity of the groundwater resources in the Cave Springs area to meet future demands, four different scenarios of increased groundwater withdrawals were analyzed using computer model simulations.

Cooperative hunting and meat sharing 400-200 kya at Qesem Cave, Israel.

Science.gov (United States)

Stiner, Mary C; Barkai, Ran; Gopher, Avi

2009-08-11

Zooarchaeological research at Qesem Cave, Israel demonstrates that large-game hunting was a regular practice by the late Lower Paleolithic period. The 400- to 200,000-year-old fallow deer assemblages from this cave provide early examples of prime-age-focused ungulate hunting, a human predator-prey relationship that has persisted into recent times. The meat diet at Qesem centered on large game and was supplemented with tortoises. These hominins hunted cooperatively, and consumption of the highest quality parts of large prey was delayed until the food could be moved to the cave and processed with the aid of blade cutting tools and fire. Delayed consumption of high-quality body parts implies that the meat was shared with other members of the group. The types of cut marks on upper limb bones indicate simple flesh removal activities only. The Qesem cut marks are both more abundant and more randomly oriented than those observed in Middle and Upper Paleolithic cases in the Levant, suggesting that more (skilled and unskilled) individuals were directly involved in cutting meat from the bones at Qesem Cave. Among recent humans, butchering of large animals normally involves a chain of focused tasks performed by one or just a few persons, and butchering guides many of the formalities of meat distribution and sharing that follow. The results from Qesem Cave raise new hypotheses about possible differences in the mechanics of meat sharing between the late Lower Paleolithic and Middle Paleolithic.

Predictive minimum description length principle approach to inferring gene regulatory networks.

Science.gov (United States)

Chaitankar, Vijender; Zhang, Chaoyang; Ghosh, Preetam; Gong, Ping; Perkins, Edward J; Deng, Youping

2011-01-01

Reverse engineering of gene regulatory networks using information theory models has received much attention due to its simplicity, low computational cost, and capability of inferring large networks. One of the major problems with information theory models is to determine the threshold that defines the regulatory relationships between genes. The minimum description length (MDL) principle has been implemented to overcome this problem. The description length of the MDL principle is the sum of model length and data encoding length. A user-specified fine tuning parameter is used as control mechanism between model and data encoding, but it is difficult to find the optimal parameter. In this work, we propose a new inference algorithm that incorporates mutual information (MI), conditional mutual information (CMI), and predictive minimum description length (PMDL) principle to infer gene regulatory networks from DNA microarray data. In this algorithm, the information theoretic quantities MI and CMI determine the regulatory relationships between genes and the PMDL principle method attempts to determine the best MI threshold without the need of a user-specified fine tuning parameter. The performance of the proposed algorithm is evaluated using both synthetic time series data sets and a biological time series data set (Saccharomyces cerevisiae). The results show that the proposed algorithm produced fewer false edges and significantly improved the precision when compared to existing MDL algorithm.

Repeated and time-correlated morphological convergence in cave-dwelling harvestmen (Opiliones, Laniatores from Montane Western North America.

Directory of Open Access Journals (Sweden)

Shahan Derkarabetian

Full Text Available BACKGROUND: Many cave-dwelling animal species display similar morphologies (troglomorphism that have evolved convergent within and among lineages under the similar selective pressures imposed by cave habitats. Here we study such ecomorphological evolution in cave-dwelling Sclerobuninae harvestmen (Opiliones from the western United States, providing general insights into morphological homoplasy, rates of morphological change, and the temporal context of cave evolution. METHODOLOGY/PRINCIPAL FINDINGS: We gathered DNA sequence data from three independent gene regions, and combined these data with Bayesian hypothesis testing, morphometrics analysis, study of penis morphology, and relaxed molecular clock analyses. Using multivariate morphometric analysis, we find that phylogenetically unrelated taxa have convergently evolved troglomorphism; alternative phylogenetic hypotheses involving less morphological convergence are not supported by Bayesian hypothesis testing. In one instance, this morphology is found in specimens from a high-elevation stony debris habitat, suggesting that troglomorphism can evolve in non-cave habitats. We discovered a strong positive relationship between troglomorphy index and relative divergence time, making it possible to predict taxon age from morphology. Most of our time estimates for the origin of highly-troglomorphic cave forms predate the Pleistocene. CONCLUSIONS/SIGNIFICANCE: While several regions in the eastern and central United States are well-known hotspots for cave evolution, few modern phylogenetic studies have addressed the evolution of cave-obligate species in the western United States. Our integrative studies reveal the recurrent evolution of troglomorphism in a perhaps unexpected geographic region, at surprisingly deep time depths, and in sometimes surprising habitats. Because some newly discovered troglomorphic populations represent undescribed species, our findings stress the need for further biological

Indoor radon concentration levels in Mexican caves, using nuclear track methodology, and the relationship with living habits of the bats

International Nuclear Information System (INIS)

Espinosa, G.; Golzarri, J.I.; Vega-Orihuela, E.; Morales-Malacara, J.B.

2013-01-01

This work presents the results of a study of the radon levels in four caves in Mexico: Los Riscos Cave and El Judio Cave in the State of Queretaro, and Coyozochico Cave and Karmidas Cave in the State of Puebla. The measurements were made using the passive closed-end cup system, with CR-39 (Lantrack R ) as detection material, and following protocols established for the measurement of indoor radon, developed at the Dosimetry Applications Project of the Physics Institute of the Universidad Nacional Autonoma de Mexico. The radon concentration at one location with Karmidas Cave reached more than 60,000 Bq/m 3 , while concentrations in the other three caves varied from 83.1-1216.0 Bq/m 3 , was found. During the study was observed an interesting coincidence between the radon concentration distribution inside the caves, and the bat colonies location. In general, the bat colonies are located at the medium or low radon concentration levels zones. (author)

3D numerical modeling of longwall mining with top-coal caving

Energy Technology Data Exchange (ETDEWEB)

Yasitli, N.E.; Unver, B. [Hacettepe University, Ankara (Turkey). Dept. of Mining Engineering

2005-02-01

Top-coal caving is the key factor affecting the efficiency of production at thick-coal seams. During production of top coal by caving behind the face not only a significant amount of coal is lost in the goaf but the coal drawn by means of caving is diluted considerably with surrounding rock. Therefore, it is not possible to carry out an efficient production operation unless caving of top coal behind the face is optimized. In this paper, results of 3D modeling of the top-coal-caving mechanism by using the finite difference code FLAC3{sup D} at the M3 longwall panel of the Omerler Underground Mine located at Tuncbilek (Turkey) are presented. According to the modeling results, maximum vertical abutment stresses were formed at a distance of 7m in front of the face. An analysis of the conditions of top coal has revealed that a 1.5 m thick layer of coal just above the shield supports is well fractured. However, a 3.5 m thick layer of coal above the fractured part is either not fractured or is fractured in the form of large blocks leading to obstruction of windows of shields during coal drawing. It is concluded that, in order to decrease dilution and increase extraction ratio and efficiency of operation, top coal should be as uniformly fractured as possible. Hence, an efficient and continuous coal flowing behind the face can be maintained. A special pre-fracture blasting strategy just sufficient enough to form cracks in the top coal is suggested by means of comparing with the results of numerical modeling.

Universal Darwinism As a Process of Bayesian Inference.

Science.gov (United States)

Campbell, John O

2016-01-01

Many of the mathematical frameworks describing natural selection are equivalent to Bayes' Theorem, also known as Bayesian updating. By definition, a process of Bayesian Inference is one which involves a Bayesian update, so we may conclude that these frameworks describe natural selection as a process of Bayesian inference. Thus, natural selection serves as a counter example to a widely-held interpretation that restricts Bayesian Inference to human mental processes (including the endeavors of statisticians). As Bayesian inference can always be cast in terms of (variational) free energy minimization, natural selection can be viewed as comprising two components: a generative model of an "experiment" in the external world environment, and the results of that "experiment" or the "surprise" entailed by predicted and actual outcomes of the "experiment." Minimization of free energy implies that the implicit measure of "surprise" experienced serves to update the generative model in a Bayesian manner. This description closely accords with the mechanisms of generalized Darwinian process proposed both by Dawkins, in terms of replicators and vehicles, and Campbell, in terms of inferential systems. Bayesian inference is an algorithm for the accumulation of evidence-based knowledge. This algorithm is now seen to operate over a wide range of evolutionary processes, including natural selection, the evolution of mental models and cultural evolutionary processes, notably including science itself. The variational principle of free energy minimization may thus serve as a unifying mathematical framework for universal Darwinism, the study of evolutionary processes operating throughout nature.

Fuzzy logic controller using different inference methods

International Nuclear Information System (INIS)

Liu, Z.; De Keyser, R.

1994-01-01

In this paper the design of fuzzy controllers by using different inference methods is introduced. Configuration of the fuzzy controllers includes a general rule-base which is a collection of fuzzy PI or PD rules, the triangular fuzzy data model and a centre of gravity defuzzification algorithm. The generalized modus ponens (GMP) is used with the minimum operator of the triangular norm. Under the sup-min inference rule, six fuzzy implication operators are employed to calculate the fuzzy look-up tables for each rule base. The performance is tested in simulated systems with MATLAB/SIMULINK. Results show the effects of using the fuzzy controllers with different inference methods and applied to different test processes

Seasonal variation measurements of radon levels in caves using SSNTD method

International Nuclear Information System (INIS)

Espinosa, G.; Golzarri, J.I.; Gammage, R.B.; Sajo-Bohus, L.; Viccon-Pale, J.; Signoret-Poillon, M.

2008-01-01

The results of radon concentration measurements inside of the Gabriel caves of Mexico, during three consecutive two-month periods covering almost three seasons, are reported in the present work. The radio-ecological importance of this site is related to the radon and its concentration-dynamic behavior in the cave. Further interest in radiation safety motivated this initiative since routine biological field work is done, with people spending long periods of time there. CR-39 passive nuclear track detector was chosen for this survey. Radon concentration levels decrease during the rainy season and show different values depending on the ventilation and geometeorological structure. Measured values range between 956 and 4931Bqm -3 , an indication that radon doses may exceed the allowed values for workers. This project is part of a larger study of indoor radon alpha emitters in Mexican caves

Seasonal variation measurements of radon levels in caves using SSNTD method

Energy Technology Data Exchange (ETDEWEB)

Espinosa, G. [Instituto de Fisica, Universidad Nacional Autonoma de Mexico, Apartado Postal 20-364, 01000 Mexico, D.F. (Mexico)], E-mail: espinosa@fisica.unam.mx; Golzarri, J.I. [Instituto de Fisica, Universidad Nacional Autonoma de Mexico, Apartado Postal 20-364, 01000 Mexico, D.F. (Mexico); Gammage, R.B. [Oak Ridge National Laboratory, PO Box 2008, Oak Ridge, TN 37831-6480 (United States); Sajo-Bohus, L. [Departamento de Fisica, Universidad Simon Bolivar (Venezuela); Viccon-Pale, J.; Signoret-Poillon, M. [El Hombre y su Ambiente, UAM-Xochimilco, Mexico D.F. (Mexico)

2008-08-15

The results of radon concentration measurements inside of the Gabriel caves of Mexico, during three consecutive two-month periods covering almost three seasons, are reported in the present work. The radio-ecological importance of this site is related to the radon and its concentration-dynamic behavior in the cave. Further interest in radiation safety motivated this initiative since routine biological field work is done, with people spending long periods of time there. CR-39 passive nuclear track detector was chosen for this survey. Radon concentration levels decrease during the rainy season and show different values depending on the ventilation and geometeorological structure. Measured values range between 956 and 4931Bqm{sup -3}, an indication that radon doses may exceed the allowed values for workers. This project is part of a larger study of indoor radon alpha emitters in Mexican caves.

Digital Preservation of Ancient Maya Cave Architecture: Recent Field Efforts in Quintana Roo, Mexico

Science.gov (United States)

Rissolo, D.; Lo, E.; Hess, M. R.; Meyer, D. E.; Amador, F. E.

2017-08-01

The presence of ancient Maya shrines in caves serves as unequivocal evidence for the ritual appropriation of these subterranean spaces and their significance with respect to Maya religious practice. Detailed study of the miniature masonry temples and altar features in the caves of Quintana Roo, Mexico reveals a strong stylistic and likely functional correspondence between these structures and their terrestrial counterparts at Postclassic sites. The Proyecto Arquitectura Subterranea de Quintana Roo (coordinated by the Center of Interdisciplinary Science for Art, Architecture, and Archaeology, or CISA3, at the University of California, San Diego and in collaboration with the Instituto Nacional de Antropologia e Historia in Mexico) is conducting a survey and program of digital documentation of both the pristine and impacted cave shrines of the region. Once an area is developed and populated, and access is opened to caves containing ancient architectural features, they are soon vandalized - often resulting in the complete obliteration of these rare miniature buildings and their diagnostic architectural elements. This emergent situation necessitates the use of rapid reality-capture tools; however, the physical challenges of working in caves requires researchers of adapt increasingly common architectural documentation methodologies to more adverse field conditions.

Passive seismic tomography application for cave monitoring in DOZ underground mine PT. Freeport Indonesia

International Nuclear Information System (INIS)

Nurhandoko, Bagus Endar B.; Wely, Woen; Setiadi, Herlan; Riyanto, Erwin

2015-01-01

It is already known that tomography has a great impact for analyzing and mapping unknown objects based on inversion, travel time as well as waveform inversion. Therefore, tomography has used in wide area, not only in medical but also in petroleum as well as mining. Recently, tomography method is being applied in several mining industries. A case study of tomography imaging has been carried out in DOZ ( Deep Ore Zone ) block caving mine, Tembagapura, Papua. Many researchers are undergoing to investigate the properties of DOZ cave not only outside but also inside which is unknown. Tomography takes a part for determining this objective.The sources are natural from the seismic events that caused by mining induced seismicity and rocks deformation activity, therefore it is called as passive seismic. These microseismic travel time data are processed by Simultaneous Iterative Reconstruction Technique (SIRT). The result of the inversion can be used for DOZ cave monitoring. These information must be used for identifying weak zone inside the cave. In addition, these results of tomography can be used to determine DOZ and cave information to support mine activity in PT. Freeport Indonesia

Passive seismic tomography application for cave monitoring in DOZ underground mine PT. Freeport Indonesia

Energy Technology Data Exchange (ETDEWEB)

Nurhandoko, Bagus Endar B.; Wely, Woen; Setiadi, Herlan [WISFIR Laboratory, Earth Physics and Complex System Division, Physics Department, Faculty of Mathematics and Natural Sciences, Institut Teknologi Bandung (Indonesia); Riyanto, Erwin [Geotechnical and Hydrology PT. Freeport Indonesia wonbin-ww@hotmail.com (Indonesia)

2015-04-16

It is already known that tomography has a great impact for analyzing and mapping unknown objects based on inversion, travel time as well as waveform inversion. Therefore, tomography has used in wide area, not only in medical but also in petroleum as well as mining. Recently, tomography method is being applied in several mining industries. A case study of tomography imaging has been carried out in DOZ ( Deep Ore Zone ) block caving mine, Tembagapura, Papua. Many researchers are undergoing to investigate the properties of DOZ cave not only outside but also inside which is unknown. Tomography takes a part for determining this objective.The sources are natural from the seismic events that caused by mining induced seismicity and rocks deformation activity, therefore it is called as passive seismic. These microseismic travel time data are processed by Simultaneous Iterative Reconstruction Technique (SIRT). The result of the inversion can be used for DOZ cave monitoring. These information must be used for identifying weak zone inside the cave. In addition, these results of tomography can be used to determine DOZ and cave information to support mine activity in PT. Freeport Indonesia.

Evaluating visual discomfort in stereoscopic projection-based CAVE system with a close viewing distance

Science.gov (United States)

Song, Weitao; Weng, Dongdong; Feng, Dan; Li, Yuqian; Liu, Yue; Wang, Yongtian

2015-05-01

As one of popular immersive Virtual Reality (VR) systems, stereoscopic cave automatic virtual environment (CAVE) system is typically consisted of 4 to 6 3m-by-3m sides of a room made of rear-projected screens. While many endeavors have been made to reduce the size of the projection-based CAVE system, the issue of asthenopia caused by lengthy exposure to stereoscopic images in such CAVE with a close viewing distance was seldom tangled. In this paper, we propose a light-weighted approach which utilizes a convex eyepiece to reduce visual discomfort induced by stereoscopic vision. An empirical experiment was conducted to examine the feasibility of convex eyepiece in a large depth of field (DOF) at close viewing distance both objectively and subjectively. The result shows the positive effects of convex eyepiece on the relief of eyestrain.

A Bayesian Framework That Integrates Heterogeneous Data for Inferring Gene Regulatory Networks

Energy Technology Data Exchange (ETDEWEB)

Santra, Tapesh, E-mail: tapesh.santra@ucd.ie [Systems Biology Ireland, University College Dublin, Dublin (Ireland)

2014-05-20

Reconstruction of gene regulatory networks (GRNs) from experimental data is a fundamental challenge in systems biology. A number of computational approaches have been developed to infer GRNs from mRNA expression profiles. However, expression profiles alone are proving to be insufficient for inferring GRN topologies with reasonable accuracy. Recently, it has been shown that integration of external data sources (such as gene and protein sequence information, gene ontology data, protein–protein interactions) with mRNA expression profiles may increase the reliability of the inference process. Here, I propose a new approach that incorporates transcription factor binding sites (TFBS) and physical protein interactions (PPI) among transcription factors (TFs) in a Bayesian variable selection (BVS) algorithm which can infer GRNs from mRNA expression profiles subjected to genetic perturbations. Using real experimental data, I show that the integration of TFBS and PPI data with mRNA expression profiles leads to significantly more accurate networks than those inferred from expression profiles alone. Additionally, the performance of the proposed algorithm is compared with a series of least absolute shrinkage and selection operator (LASSO) regression-based network inference methods that can also incorporate prior knowledge in the inference framework. The results of this comparison suggest that BVS can outperform LASSO regression-based method in some circumstances.

A Bayesian Framework That Integrates Heterogeneous Data for Inferring Gene Regulatory Networks

International Nuclear Information System (INIS)

Santra, Tapesh

2014-01-01

Reconstruction of gene regulatory networks (GRNs) from experimental data is a fundamental challenge in systems biology. A number of computational approaches have been developed to infer GRNs from mRNA expression profiles. However, expression profiles alone are proving to be insufficient for inferring GRN topologies with reasonable accuracy. Recently, it has been shown that integration of external data sources (such as gene and protein sequence information, gene ontology data, protein–protein interactions) with mRNA expression profiles may increase the reliability of the inference process. Here, I propose a new approach that incorporates transcription factor binding sites (TFBS) and physical protein interactions (PPI) among transcription factors (TFs) in a Bayesian variable selection (BVS) algorithm which can infer GRNs from mRNA expression profiles subjected to genetic perturbations. Using real experimental data, I show that the integration of TFBS and PPI data with mRNA expression profiles leads to significantly more accurate networks than those inferred from expression profiles alone. Additionally, the performance of the proposed algorithm is compared with a series of least absolute shrinkage and selection operator (LASSO) regression-based network inference methods that can also incorporate prior knowledge in the inference framework. The results of this comparison suggest that BVS can outperform LASSO regression-based method in some circumstances.

Hydrothermal phenomena in Risovaca cave and within Vencac massif Shumadies, Serbia

Directory of Open Access Journals (Sweden)

Wrzak-Tomić Janina

2004-01-01

Full Text Available In the Risovaca cave are found, for the karst, atypical alteration in the limestones structure. Also, morphogenesis of the object can not be logically interpret. Those differences are result of hydrothermal process in initial phase of karstic cycle. And then activity of hot water and hot emanations brought up to the metasomatism and destruction of rock, enormous excrete of ornaments and later, ceiling collapse and fill up of cave room.

A new and accurate fault location algorithm for combined transmission lines using Adaptive Network-Based Fuzzy Inference System

Energy Technology Data Exchange (ETDEWEB)

Sadeh, Javad; Afradi, Hamid [Electrical Engineering Department, Faculty of Engineering, Ferdowsi University of Mashhad, P.O. Box: 91775-1111, Mashhad (Iran)

2009-11-15

This paper presents a new and accurate algorithm for locating faults in a combined overhead transmission line with underground power cable using Adaptive Network-Based Fuzzy Inference System (ANFIS). The proposed method uses 10 ANFIS networks and consists of 3 stages, including fault type classification, faulty section detection and exact fault location. In the first part, an ANFIS is used to determine the fault type, applying four inputs, i.e., fundamental component of three phase currents and zero sequence current. Another ANFIS network is used to detect the faulty section, whether the fault is on the overhead line or on the underground cable. Other eight ANFIS networks are utilized to pinpoint the faults (two for each fault type). Four inputs, i.e., the dc component of the current, fundamental frequency of the voltage and current and the angle between them, are used to train the neuro-fuzzy inference systems in order to accurately locate the faults on each part of the combined line. The proposed method is evaluated under different fault conditions such as different fault locations, different fault inception angles and different fault resistances. Simulation results confirm that the proposed method can be used as an efficient means for accurate fault location on the combined transmission lines. (author)

Design of uav robust autopilot based on adaptive neuro-fuzzy inference system

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Mohand Achour Touat

2008-04-01

Full Text Available  This paper is devoted to the application of adaptive neuro-fuzzy inference systems to the robust control of the UAV longitudinal motion. The adaptive neore-fuzzy inference system model needs to be trained by input/output data. This data were obtained from the modeling of a ”crisp” robust control system. The synthesis of this system is based on the separation theorem, which defines the structure and parameters of LQG-optimal controller, and further - robust optimization of this controller, based on the genetic algorithm. Such design procedure can define the rule base and parameters of fuzzyfication and defuzzyfication algorithms of the adaptive neore-fuzzy inference system controller, which ensure the robust properties of the control system. Simulation of the closed loop control system of UAV longitudinal motion with adaptive neore-fuzzy inference system controller demonstrates high efficiency of proposed design procedure.

Poisson-Based Inference for Perturbation Models in Adaptive Spelling Training

Science.gov (United States)

Baschera, Gian-Marco; Gross, Markus

2010-01-01

We present an inference algorithm for perturbation models based on Poisson regression. The algorithm is designed to handle unclassified input with multiple errors described by independent mal-rules. This knowledge representation provides an intelligent tutoring system with local and global information about a student, such as error classification…

Post-speleogenetic biogenic modification of Gomantong Caves, Sabah, Borneo

Science.gov (United States)

Lundberg, Joyce; McFarlane, Donald A.

2012-07-01

The Gomantong cave system of eastern Sabah, Malaysia, is well-known as an important site for harvesting edible bird-nests and, more recently, as a tourist attraction. Although the biology of the Gomantong system has been repeatedly studied, very little attention has been given to the geomorphology. Here, we report on the impact of geobiological modification in the development of the modern aspect of the cave, an important but little recognized feature of tropical caves. Basic modeling of the metabolic outputs from bats and birds (CO2, H2O, heat) reveals that post-speleogenetic biogenic corrosion can erode bedrock by between ~ 3.0 mm/ka (1 m/~300 ka) and ~ 4.6 mm/ka (1 m/~200 ka). Modeling at high densities of bats yields rates of corrosion of ~ 34 mm/ka (or 1 m/~30 ka). Sub-aerial corrosion creates a previously undescribed speleological feature, the apse-flute, which is semicircular in cross-section and ~ 80 cm wide. It is vertical regardless of rock properties, developing in parallel but apparently completely independently, and often unbroken from roof to floor. They end at a blind hemi-spherical top with no extraneous water source. Half-dome ceiling conch pockets are remnants of previous apse-fluting. Sub-cutaneous corrosion creates the floor-level guano notch formed by organic acid dissolution of bedrock in contact with guano. Speleogenetic assessment suggests that as much as 70-95% of the total volume of the modern cave may have been opened by direct subaerial biogenic dissolution and biogenically-induced collapse, and by sub-cutaneous removal of limestone, over a timescale of 1-2 Ma.

Late quaternary brown bear (Ursidae: Ursus cf. arctos) from a cave in the Huachuca Mountains, Arizona

Science.gov (United States)

Nicholas J. Czaplewski; Steve Willsey

2013-01-01

In 2008, Steve Willsey discovered the fragmentary cranium of a bear loose on the floor of a cave at about 2270 m elevation near the crest of the Huachuca Mountains. In 2009, we revisited the cave to examine the specimen with the intention of identifying the species. We photographed and measured the main pieces and left them in the cave. The skull is from an adult,...

Cave invertebrates in Espírito Santo state, Brazil: a primary analysis of endemism, threats and conservation priorities

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Marconi Souza Silva

2015-08-01

Full Text Available The cave-dwelling invertebrates were studied according to their composition, biodiversity, distribution and threats in the Atlantic Forest Central Biodiversity Corridor, a priority area for conservation actions in Brazil. Twelve obligate cave species were found, plus 495 troglophile species. Araneae (103 spp., Coleoptera (61 spp., Diptera (56 spp. and Lepidoptera (38 spp. were the richest taxa. The richness was higher in the carbonate caves (63 spp., sd = 16.7 and the highest diversity in granitic caves (H´= 2.68, sd = 0.5. The spatial turnover was 63.45 and similarity less than 30%. The total richness was correlated with the linear extension of the caves (Rs = 0.757, p ≤ 0.05. Surrounding area deforestation and religious and tourist use were the main threats. Emergency attention is recommended regarding protective actions, management and conservation of caves of extremely high biological importance.

Winter distribution and use of high elevation caves as foraging sites by the endangered Hawaiian hoary bat, Lasiurus cinereus semotus

Science.gov (United States)

Bonaccorso, Frank; Montoya-Aiona, Kristina; Pinzari, Corinna A.; Todd, Christopher M.

2016-01-01

We examine altitudinal movements involving unusual use of caves by Hawaiian hoary bats, Lasiurus cinereus semotus, during winter and spring in the Mauna Loa Forest Reserve (MLFR), Hawai‘i Island. Acoustic detection of hoary bat vocalizations, were recorded with regularity outside 13 lava tube cave entrances situated between 2,200 to 3,600 m asl from November 2012 to April 2013. Vocalizations were most numerous in November and December with the number of call events and echolocation pulses decreasing through the following months. Bat activity was positively correlated with air temperature and negatively correlated with wind speed. Visual searches found no evidence of hibernacula nor do Hawaiian hoary bats appear to shelter by day in these caves. Nevertheless, bats fly deep into caves as evidenced by numerous carcasses found in cave interiors. The occurrence of feeding buzzes around cave entrances and visual observations of bats flying in acrobatic fashion in cave interiors point to the use of these spaces as foraging sites. Peridroma moth species (Noctuidae), the only abundant nocturnal, flying insect sheltering in large numbers in rock rubble and on cave walls in the MLFR, apparently serve as the principal prey attracting hoary bats during winter to lava tube caves in the upper MLFR. Caves above 3,000 m on Mauna Loa harbor temperatures suitable for Pseudogymnoascus destructansfungi, the causative agent of White-nose Syndrome that is highly lethal to some species of North American cave-dwelling bats. We discuss the potential for White-nose Syndrome to establish and affect Hawaiian hoary bats.

Comparative study of discretization methods of microarray data for inferring transcriptional regulatory networks

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Ji Wei

2010-10-01

Full Text Available Abstract Background Microarray data discretization is a basic preprocess for many algorithms of gene regulatory network inference. Some common discretization methods in informatics are used to discretize microarray data. Selection of the discretization method is often arbitrary and no systematic comparison of different discretization has been conducted, in the context of gene regulatory network inference from time series gene expression data. Results In this study, we propose a new discretization method "bikmeans", and compare its performance with four other widely-used discretization methods using different datasets, modeling algorithms and number of intervals. Sensitivities, specificities and total accuracies were calculated and statistical analysis was carried out. Bikmeans method always gave high total accuracies. Conclusions Our results indicate that proper discretization methods can consistently improve gene regulatory network inference independent of network modeling algorithms and datasets. Our new method, bikmeans, resulted in significant better total accuracies than other methods.

MATRIX-VECTOR ALGORITHMS OF LOCAL POSTERIORI INFERENCE IN ALGEBRAIC BAYESIAN NETWORKS ON QUANTA PROPOSITIONS

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A. A. Zolotin

2015-07-01

Full Text Available Posteriori inference is one of the three kinds of probabilistic-logic inferences in the probabilistic graphical models theory and the base for processing of knowledge patterns with probabilistic uncertainty using Bayesian networks. The paper deals with a task of local posteriori inference description in algebraic Bayesian networks that represent a class of probabilistic graphical models by means of matrix-vector equations. The latter are essentially based on the use of tensor product of matrices, Kronecker degree and Hadamard product. Matrix equations for calculating posteriori probabilities vectors within posteriori inference in knowledge patterns with quanta propositions are obtained. Similar equations of the same type have already been discussed within the confines of the theory of algebraic Bayesian networks, but they were built only for the case of posteriori inference in the knowledge patterns on the ideals of conjuncts. During synthesis and development of matrix-vector equations on quanta propositions probability vectors, a number of earlier results concerning normalizing factors in posteriori inference and assignment of linear projective operator with a selector vector was adapted. We consider all three types of incoming evidences - deterministic, stochastic and inaccurate - combined with scalar and interval estimation of probability truth of propositional formulas in the knowledge patterns. Linear programming problems are formed. Their solution gives the desired interval values of posterior probabilities in the case of inaccurate evidence or interval estimates in a knowledge pattern. That sort of description of a posteriori inference gives the possibility to extend the set of knowledge pattern types that we can use in the local and global posteriori inference, as well as simplify complex software implementation by use of existing third-party libraries, effectively supporting submission and processing of matrices and vectors when

Bat ticks revisited: Ixodes ariadnae sp. nov. and allopatric genotypes of I. vespertilionis in caves of Hungary.

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Hornok, Sándor; Kontschán, Jenő; Kováts, Dávid; Kovács, Richárd; Angyal, Dorottya; Görföl, Tamás; Polacsek, Zsolt; Kalmár, Zsuzsa; Mihalca, Andrei D

2014-04-27

In Europe two ixodid bat tick species, Ixodes vespertilionis and I. simplex were hitherto known to occur. Bat ticks were collected from cave walls and bats in Hungary. Their morphology and genotypes were compared with microscopy and conventional PCR (followed by sequencing), respectively. A year-round activity of I. vespertilionis was observed. Molecular analysis of the cytochrome oxidase subunit I (COI) gene of twenty ticks from different caves showed that the occurrence of the most common genotype was associated with the caves close to each other. A few specimens of a morphologically different tick variant were also found and their COI analysis revealed only 86-88% sequence homology with I. simplex and I. vespertilionis, respectively. The microenvironment of caves (well separated from each other) appears to support the existence of allopatric I. vespertilionis COI genotypes, most likely related to the distance between caves and to bat migration over-bridging certain caves. The name I. ariadnae sp. nov. is given to the new tick species described here for the first time.

The Impact of Geomorphology and Human Disturbances on the Faunal Distributions in Tiquara and Angico Caves of Campo Formoso, Bahia, Brazil

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André Vieira de Araujo

2015-04-01

Full Text Available Characterization of fauna is important for the understanding of communities and ecosystems, enabling the design of actions for conservation. In the present piece of work, we identified total 45 morphospecies belonging to the order Acarina, Pseudoscorpionida, Dictyoptera, Araneida, Amblypygi, Isopoda, Plecoptera, Amphipoda, Zygentoma, Spirostreptida, Coleoptera, Collembola, Diptera, Ensifera, Heteroptera, Hymenoptera, Lepidoptera and Psocoptera from two distinct types of caves of Campo Formoso, state of Bahia in Brazil. It was made to provide subsidies for conservation studies. The targeted caves were Tiquara Cave suffered for many years from saltpeter extraction and Angico Cave less visited cave having high tourist potential. Though the conservation status is much better in Angico cave, but we found comparatively more morphospecies in Tiquara cave.

Mimogonellus dreybrodti sp. n., a new cave-inhabiting Osoriinae from Laos (Coleoptera: Staphylinidae).

Science.gov (United States)

Yin, Zi-Wei; Steiner, Helmut

2017-10-17

A new osoriine species, Mimogonellus dreybrodti Yin & Steiner, sp. n., collected from a cave in Houaphanh Province, Laos, is described and illustrated. This represents the third Mimogonellus species in Asia, and the first in the genus known to inhabit a cave environment.

222 Rn exposure assessment in the caves of Parque Estadual Turistico do Alto Ribeira (PETAR)

International Nuclear Information System (INIS)

Alberigi, Simone

2006-01-01

In the present work, radon concentrations in six caves of PETAR - Parque Estadual Turistico do Alto Ribeira (High Ribeira River Touristic State Park) were carried out with Makrofol E solid state nuclear track detectors (SSNTD) and used to assess the annual effective dose received by regional tour guides. The park has four visitation centers: Santana, Ouro Grosso, Caboclos e Casa de Pedra and receives nearly 40,000 people annually. The caves evaluated were Couto, Agua Suja, Laje Branca, Morro Preto and Santana, from Santana center and Alambari de Baixo from Ouro Grosso center, for being the most frequently visited caves. The exposure period of the SSNTD was, at least, three months, over a period of 26 months, from October 2003 to November 2005.The 222 Rn concentrations lay in a range from 153 Bq.m -3 to 6607 Bq.m -3 and we observed that, in general, for chilly weather, the radon levels decrease. The annual effective dose, considering the most realistic scenario, with geometric mean concentrations, an equilibrium factor of 0.5 and annual exposure time for each cave, varied from 0.2 mSv.a -1 for the Couto cave, strongly ventilated, to 4.0 mSv.a -1 for the Santana cave, the most frequently visited and no external communication. For the worst scenario, with arithmetic mean concentrations, equilibrium factor 1 and annual exposure time for all caves, the annual effective dose was 16.1 mSv.a -1 . All assessed effective doses received by the tour guides are bellow 20 mSv.a -1 suggested as an annual effective dose limit for occupational exposure by the International Commission of Radiological Protection (ICRP 60, 1990). (author)

Food sources of selected terrestrial cave arthropods

Czech Academy of Sciences Publication Activity Database

Smrž, J.; Kováč, L.; Mikeš, J.; Šustr, Vladimír; Lukešová, Alena; Tajovský, Karel; Nováková, Alena; Režňáková, P.

2015-01-01

Roč. 16, č. 1 (2015), s. 37-46 ISSN 1768-1448 Grant - others:Vega(SK) 1/0139/09 Institutional research plan: CEZ:AV0Z60660521 Institutional support: RVO:60077344 Keywords : Acari * caves * Collembola * Diplopoda * feeding habits * Isopoda Subject RIV: EG - Zoology

Late Quaternary speleogenesis and landscape evolution in a tropical carbonate island: Pango la Kuumbi (Kuumbi Cave, Zanzibar

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Nikos Kourampas

2015-09-01

Full Text Available Kuumbi Cave is one of a group of caves that underlie a flight of marine terraces in Pleistocene limestone in eastern Zanzibar (Indian Ocean. Drawing on the findings of geoarchaeological field survey and archaeological excavation, we discuss the formation and evolution of Kuumbi Cave and its wider littoral landscape. In the later part of the Quaternary (last ca. 250,000 years?, speleogenesis and terrace formation were driven by the interplay between glacioeustatic sea level change and crustal uplift at rates of ca. 0.10-0.20 mm/yr. Two units of backreef/reef limestone were deposited during ‘optimal’ (highest highstands, tentatively correlated with MIS 7 and 5; (mainly erosive marine terraces formed in these limestones in ‘suboptimal’ highstands. Kuumbi and other sub-terrace caves developed as flank margin caves, in the seaward portion of freshwater lenses during such ‘suboptimal’ highstands. Glacioeustacy-induced fluctuations of the groundwater table may have resulted in shifts from vadose (with deposition of well-developed speleothems to phreatic/epiphreatic conditions in these caves. At Kuumbi, Late Pleistocene (pre-20,000 cal. BP ceiling collapse initiated colluvial deposition near-entrance and opened the cave to large plants and animals, including humans. A phase of terminal Pleistocene human occupation ca. 18,500-17,000 cal. BP resulted in the deposition of a dense assemblage of Achatina spp. landsnails, alongside marine molluscs and mammal remains (including zebra, buffalo and other taxa now extinct on Zanzibar. The Holocene part of the cave stratigraphy near-entrance records phases of abandonment and intensified late Holocene human use.

Phlebotomines (Diptera, Psychodidae in caves of the Serra da Bodoquena, Mato Grosso do Sul State, Brazil

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Eunice A. B. Galati

2003-01-01

Full Text Available The present paper deals with the phlebotomine species captured during the period from January 1998 to June 2000 in 12 caves located in the Serra da Bodoquena, situated in the south central region of Mato Grosso do Sul State, Brazil. Three of the caves are situated further north (in Bodoquena county, seven in the central area (Bonito county and two in the south (Jardim county. These last two caves and three of those in Bonito are located at the west side of the ridge. Eighteen species of phlebotomines were captured within the caves: Brumptomyia avellari (Costa Lima, 1932, Brumptomyia brumpti (Larrousse, 1920, Brumptomyia cunhai (Mangabeira, 1942, Brumptomyia galindoi (Fairchild & Hertig, 1947, Evandromyia corumbaensis (Galati, Nunes, Oshiro & Rego, 1989, Lutzomyia almerioi Galati & Nunes, 1999, Lutzomyia longipalpis (Lutz & Neiva, 1912, Martinsmyia oliveirai (Martins, Falcão & Silva, 1970, Micropygomyia acanthopharynx (Martins, Falcão & Silva, 1962, Micropygomyia peresi (Mangabeira, 1942, Micropygomyia quinquefer (Dyar, 1929, Nyssomyia whitmani (Antunes & Coutinho, 1939, Psathyromyia campograndensis (Oliveira, Andrade-Filho, Falcão & Brazil, 2001, Psathyromyia punctigeniculata (Floch & Abonnenc, 1944, Psathyromyia shannoni (Dyar, 1929, Pintomyia kuscheli (Le Pont, Martinez, Torrez-Espejo & Dujardin, 1998, Sciopemyia sordellii (Shannon & Del Ponte, 1927 and Sciopemyia sp. A total of 29,599 phlebotomine sandflies was obtained. Lutzomyia almerioi was absolutely predominant (91.5% over the other species on both sides of the Bodoquena ridge, with the exception of the southern caves in which it was absent. It presents summer predominance, with nocturnal and diurnal activities. The species breeds in the caves and was captured during daytime both in the dark area and in the mouth of the caves. Martinsmyia oliveirai, the second most frequent sandfly, also presents a summer peak and only predominated over the other species in one cave, in which there

Wintering bats of the upper Snake River Plain: occurrence in lava-tube caves

Energy Technology Data Exchange (ETDEWEB)

Genter, D.L.

1986-04-30

Distribution and habitat selection of hibernating bats at the Idaho National Engineering Laboratory (INEL) and adjacent area are reported. Exploration of over 30 lava-tube caves revealed that two species, Myotis leibii and Plecotus townsendii, hibernate in the upper Snake River Plain. Five species, M. lucifugus, M. evotis, Eptesicus fuscus, Lasionycteris noctivagans, and Lasiurus cinereus are considered migratory. Myotis leibii and P. townsendii hibernate throughout much of the area, occasionally in mixed-species groups. Myotis leibii uses the dark and protected regions of the cave, usually wedged into tiny pockets and crevices near or at the highest portion of the ceiling. Individuals of P. townsendii may be found at any height or depth in the cave. Temperature appears to be primary limiting factor in habitat selection. Myotis leibii was found in significantly cooler air temperatures than P. townsendii. Neither species tolerated continuous temperatures below 1.5 C. Relative humidity does not seem to be a significant factor in the distribution or habitat selection of the two species in lava-tube caves. 18 references, 1 figure, 1 table.

Microbial communities in a coastal cave: Cova des Pas de Vallgornera (Mallorca, Western Mediterranean

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Antoni Busquets

2014-05-01

Full Text Available As a part of an ongoing project on the role of microbes in the biogeochemistry of Majorcan caves, the species diversity of microbial communities present in cave pools of anchialine waters in the Cova des Pas de Vallgornera (Mallorca, western Mediterranean is investigated by a culture-dependent method. Two-hundred and forty-eight strains isolated from this characteristic cave environment of the littoral karst are identified by whole-cell-MALDI-TOF mass spectrometry and phylogeneticaly by 16S rRNA gene sequences. Total cell counts and species diversity of the bacterial communities decreas with the distance to the entrance of the cave and to the sea. Strains are mainly identified as members of the Gammaproteobacteria and Actinobacteria. Around 20% of the isolates are able to precipitate carbonates. Calcite is the predominant phase, growing in all the precipitates, although struvite is also found in one Pseudomonas and in one Aspergillus cultures. Differences in crystal characteristics of external shape (habit and growth are observed according to the bacterial species promoting the precipitates. Bacteria associated with multicolored ferromanganese deposits, present in several parts of the cave, are also studied and are identified as Pseudomonas benzenivorans and Nocardioides luteus. The preponderance of Pseudomonas species and the possible contribution of bacteria in calcite deposition are discussed.

DIGITAL PRESERVATION OF ANCIENT MAYA CAVE ARCHITECTURE: RECENT FIELD EFFORTS IN QUINTANA ROO, MEXICO

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D. Rissolo

2017-08-01

Full Text Available The presence of ancient Maya shrines in caves serves as unequivocal evidence for the ritual appropriation of these subterranean spaces and their significance with respect to Maya religious practice. Detailed study of the miniature masonry temples and altar features in the caves of Quintana Roo, Mexico reveals a strong stylistic and likely functional correspondence between these structures and their terrestrial counterparts at Postclassic sites. The Proyecto Arquitectura Subterranea de Quintana Roo (coordinated by the Center of Interdisciplinary Science for Art, Architecture, and Archaeology, or CISA3, at the University of California, San Diego and in collaboration with the Instituto Nacional de Antropologia e Historia in Mexico is conducting a survey and program of digital documentation of both the pristine and impacted cave shrines of the region. Once an area is developed and populated, and access is opened to caves containing ancient architectural features, they are soon vandalized – often resulting in the complete obliteration of these rare miniature buildings and their diagnostic architectural elements. This emergent situation necessitates the use of rapid reality-capture tools; however, the physical challenges of working in caves requires researchers of adapt increasingly common architectural documentation methodologies to more adverse field conditions.

Age and speleogenesis of epigenic gypsum caves in the northern Apennines (Italy)

Science.gov (United States)

Columbu, Andrea; Chiarini, Veronica; De Waele, Jo; Drysdale, Russell; Forti, Paolo; Hellstrom, John; Woodhead, Jon

2016-04-01

Triassic and Messinian gypsum beds host the majority of the caves in the eastern flank of the northern Apennines. To date, more than six hundreds voids have been mapped, including the longest known epigenic gypsum cave system in the world (Spipola-Acquafredda, ~11 km of tunnels) (De Waele et al., 2013). Superimposed caves are typically sub-horizontal (Klimchouk, 2000) and connected through vertical shafts, reflecting the palaeo base-level variations. When preserved, river terraces at the surface lie at the same palaeo altitude of the base level and horizontal cave passages. Notwithstanding the well-known geology of the area known (Vai and Martini, 2001), the age of these caves has been greatly underestimated in the past. Considering the rapid dissolution of the gypsum and uplifting of the area, the start of speleogenesis activity was considered to have occurred during the last glacial age. The age of karst voids can be only indirectly estimated by the dating of the infilling sediments. U-Th dating on carbonate speleothems provides high-precision and accurate ages (Hellstrom, 2003; Scholz and Hoffmann, 2008). We thus applied this methodology to 20 speleothems coming from 14 different caves belonging to the Monte Tondo, Spipola Acquafredda, Castelnuovo, Stella-Rio Basino and Brisighella systems. The results show that: i) caves were forming since at least ~300 ka; ii) the peak of speleogenesis was reached during relatively cold climate stages, when rivers formed terraces at the surface and aggradation caused paragenesis in the stable cave levels (Columbu et al., 2015). Besides the significant contribution to the understanding of the Apennines evaporite karst evolution, this study (and its further advancement) may also refine knowledge of the local vs regional uplifting rates and base-level variations since the late Pleistocene (Wegmann and Pazzaglia, 2009). References Columbu, A., De Waele, J., Forti, P., Montagna, P., Picotti, V., Pons-Branchu, E., Hellstrom, J

Speleoclimate dynamics in Santana Cave (PETAR, São Paulo State, Brazil: general characterization and implications for tourist management

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Heros Augusto Santos Lobo

2015-01-01

Full Text Available Show caves provide tourists with the opportunity to have close contact with natural underground spaces. However, visitation to these places also creates a need for management measures, mainly the definition of tourist carrying capacity. The present work describes the results of climate monitoring and atmospheric profiling performed in Santana Cave (Alto Ribeira State and Tourist Park – PETAR, Brazil between 2008 and 2011. Based on the results, distinct preliminary zones with different levels of thermal variation were identified, which classify Santana Cave as a warm trap. Two critical points along the tourist route (Cristo and Encontro Halls were identified where the temperature of the locality increased by 1.3 °C when tourists were present. Air flow from the inner cave to the outside occurs during the austral summer, and the opposite flow occurs when the outside environment is colder than the air inside the cave during the austral winter. The temperature was used to establish thresholds to the tourist carrying capacity by computing the recovery time of the atmospheric conditions after the changes caused by the presence of tourists. This method suggests a maximum limit of approximately 350 visits per day to Santana Cave. The conclusion of the study is that Santana Cave has an atmosphere that is highly connected with the outside; daily variations in temperature and, to a lesser extent, in the relative humidity occur throughout the entire studied area of the cave. Therefore, the tourist carrying capacity in Santana Cave can be flexible and can be implemented based on the climate seasonality, the tourism demand and other management strategies.

Universal Darwinism as a process of Bayesian inference

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John Oberon Campbell

2016-06-01

Full Text Available Many of the mathematical frameworks describing natural selection are equivalent to Bayes’ Theorem, also known as Bayesian updating. By definition, a process of Bayesian Inference is one which involves a Bayesian update, so we may conclude that these frameworks describe natural selection as a process of Bayesian inference. Thus natural selection serves as a counter example to a widely-held interpretation that restricts Bayesian Inference to human mental processes (including the endeavors of statisticians. As Bayesian inference can always be cast in terms of (variational free energy minimization, natural selection can be viewed as comprising two components: a generative model of an ‘experiment’ in the external world environment, and the results of that 'experiment' or the 'surprise' entailed by predicted and actual outcomes of the ‘experiment’. Minimization of free energy implies that the implicit measure of 'surprise' experienced serves to update the generative model in a Bayesian manner. This description closely accords with the mechanisms of generalized Darwinian process proposed both by Dawkins, in terms of replicators and vehicles, and Campbell, in terms of inferential systems. Bayesian inference is an algorithm for the accumulation of evidence-based knowledge. This algorithm is now seen to operate over a wide range of evolutionary processes, including natural selection, the evolution of mental models and cultural evolutionary processes, notably including science itself. The variational principle of free energy minimization may thus serve as a unifying mathematical framework for universal Darwinism, the study of evolutionary processes operating throughout nature.

A Fast Iterative Bayesian Inference Algorithm for Sparse Channel Estimation

DEFF Research Database (Denmark)

Pedersen, Niels Lovmand; Manchón, Carles Navarro; Fleury, Bernard Henri

2013-01-01

representation of the Bessel K probability density function; a highly efficient, fast iterative Bayesian inference method is then applied to the proposed model. The resulting estimator outperforms other state-of-the-art Bayesian and non-Bayesian estimators, either by yielding lower mean squared estimation error...

Behavioral response of cave and surface Asellus aquaticus to water current

OpenAIRE

Dacar, Maja

2017-01-01

There are many questions regarding what influences the emergence of new species. Firstly and above all, is the appearance of differences within a certain specie, where a certain part is isolated from the group and continues its own evolution. One of these differences appear between the surface- and cave-dwelling Asellus aquaticus, as the ability to hold on to their surface. The discovery of these differences was carried out using a method of experiment, namely on the cave-dwelling Asellus ...

Asymmetric Meckel Cave Enlargement: A Potential Marker of PHACES Syndrome.

Science.gov (United States)

Wright, J N; Wycoco, V

2017-06-01

PHACES syndrome is a complex of morphologic abnormalities of unknown cause and includes posterior fossa abnormalities; head and neck infantile hemangiomas; arterial, cardiac, and eye anomalies; and sternal or abdominal wall defects. Accurate identification of the syndrome is important for optimal treatment. The purpose of this study was to investigate the incidence of asymmetric Meckel cave enlargement, a potential novel imaging marker, in a population of patients referred for evaluation of possible PHACES syndrome. Eighty-five patients referred for neuroimaging evaluation of possible PHACES syndrome were identified and stratified on the basis of their ultimate clinical PHACES diagnosis categorization into PHACES, possible PHACES, or not PHACES. MR imaging studies were subsequently reviewed for the presence or absence of unilateral Meckel cave enlargement, with the reviewer blinded to the ultimate PHACES syndrome categorization. Twenty-five of 85 patients (29%) were ultimately categorized as having PHACES or possible PHACES according to consensus guidelines. Asymmetric Meckel cave enlargement was present in 76% (19/25) of these patients and in 82% (19/23) of only those patients with definite PHACES. This finding was present in none of the 60 patients determined not to have PHACES syndrome. In 7/19 patients (37%) with this finding, subtle MR imaging abnormalities consistent with PHACES were missed on the initial MR imaging interpretation. Asymmetric Meckel cave enlargement was a common feature of patients with PHACES in our cohort and may serve as a novel imaging marker. Increased awareness of this imaging feature has the potential to increase the diagnostic accuracy of PHACES. © 2017 by American Journal of Neuroradiology.

Direct radiocarbon dates for prehistoric paintings at the Altamira, El Castillo and Niaux caves

International Nuclear Information System (INIS)

Valladas, H.; Cachier, H.; Maurice, P.; Arnold, M.; Quiros, F.B. de; Valdes, V.C.; Uzquiano, P.

1992-01-01

Among things that most strikingly distinguish modern humans from other hominids and the rest of the animal kingdom is the ability to represent things and events pictorially. Complex paintings of the type discovered in the Altamira, El Castillo, Niaux and Lascaux caves represent an important stepping stone in the cultural evolution of humankind. Until now dates were derived from style or dated remains left by prehistoric visitors and could be biased by prolonged occupation or visits unrelated to painting activity. Here we report the first radiocarbon dates for the charcoal used to draw stylistically similar bisons in these caves: 14,000 ± 400 yr BP in the Spanish caves of Altamira, 12,990 ± 200 yr BP in El Castillo, and 12,890 ± 160 yr BP for a bison of different style in the French Pyrenean cave of Niaux. Our results demonstrate the imprecise nature of stylistic dating and show that painting dates derived from remains of human activities should be used with caution. (Author)

Inferring Stop-Locations from WiFi

DEFF Research Database (Denmark)

Wind, David Kofoed; Sapiezynski, Piotr; Furman, Magdalena Anna

2016-01-01

methods are based exclusively on WiFi data. We study two months of WiFi data collected every two minutes by a smartphone, and infer stop-locations in the form of labelled time-intervals. For this purpose, we investigate two algorithms, both of which scale to large datasets: a greedy approach to select...

Geomorphometric analysis of cave ceiling channels mapped with 3-D terrestrial laser scanning

Science.gov (United States)

Gallay, Michal; Hochmuth, Zdenko; Kaňuk, Ján; Hofierka, Jaroslav

2016-05-01

The change of hydrological conditions during the evolution of caves in carbonate rocks often results in a complex subterranean geomorphology, which comprises specific landforms such as ceiling channels, anastomosing half tubes, or speleothems organized vertically in different levels. Studying such complex environments traditionally requires tedious mapping; however, this is being replaced with terrestrial laser scanning technology. Laser scanning overcomes the problem of reaching high ceilings, providing new options to map underground landscapes with unprecedented level of detail and accuracy. The acquired point cloud can be handled conveniently with dedicated software, but applying traditional geomorphometry to analyse the cave surface is limited. This is because geomorphometry has been focused on parameterization and analysis of surficial terrain. The theoretical and methodological concept has been based on two-dimensional (2-D) scalar fields, which are sufficient for most cases of the surficial terrain. The terrain surface is modelled with a bivariate function of altitude (elevation) and represented by a raster digital elevation model. However, the cave is a 3-D entity; therefore, a different approach is required for geomorphometric analysis. In this paper, we demonstrate the benefits of high-resolution cave mapping and 3-D modelling to better understand the palaeohydrography of the Domica cave in Slovakia. This methodological approach adopted traditional geomorphometric methods in a unique manner and also new methods used in 3-D computer graphics, which can be applied to study other 3-D geomorphological forms.

Secondary sulfate minerals from Alum Cave Bluff: Microscopy and microanalysis

Energy Technology Data Exchange (ETDEWEB)

Lauf, R.J.

1997-07-01

Microcrystals of secondary sulfate minerals from Alum Cave Bluff, Great Smoky Mountains National Park, were examined by scanning electron microscopy and identified by X-ray fluorescence (XRF) in the SEM. Among the samples the author discovered three new rare-earth sulfates: coskrenite-(Ce), levinsonite-(Y), and zugshunstite-(Ce). Other minerals illustrated in this report include sulfur, tschermigite, gypsum, epsomite, melanterite, halotrichite, apjohnite, jarosite, slavikite, magnesiocopiapite, and diadochite. Additional specimens whose identification is more tentative include pickeringite, aluminite, basaluminite, and botryogen. Alum Cave is a ``Dana locality`` for apjohnite and potash alum, and is the first documented North American occurrence of slavikite.

Three new cave-dwelling trechine ground beetles from eastern and southeastern Serbia (Coleoptera: Carabidae: Trechinae

Directory of Open Access Journals (Sweden)

Ćurčić S.B.

2014-01-01

Full Text Available Three new troglobitic trechine ground beetle species are described from three caves in eastern and southeastern Serbia: Duvalius (Paraduvalius bogovinae sp. n., from the Bogovinska Pećina Cave, village of Bogovina, Kučajske Planine Mts., near Boljevac, eastern Serbia; D. (P. milutini sp. n., from the Samar cave system, village of Kopajkošara, Mt. Kalafat, near Svrljig, southeastern Serbia, and D. (P. beljanicae sp. n., from the Velika Atula Cave, village of Strmosten, Mt. Beljanica, near Despotovac, eastern Serbia. The new species are easily distinguished from relatives. All important morphological features, along with the diagnoses and illustrations of the new taxa are presented. The new species are relicts and endemics of eastern and southeastern Serbia. They probably belong to old phyletic lineages of Tertiary or even pre-Tertiary origin. [Projekat Ministarstva nauke Republike Srbije, br. 173038

On the palaeobiology of the extinct cave bear Ursus spelaeus ROSENMÜLLER. Insights from stable isotope analysis

Science.gov (United States)

Grandal-D'Anglade, Aurora; Pérez-Rama, Marta; Fernández-Mosquera, Daniel

2010-05-01

Isotopic signatures (δ13C, δ15N) of bone collagen are used more and more to obtain the paleobiological data of fossil species. By means of these signatures, for example, the diet type of an extint species may be inferred. Also, the climate in which this species developed may greatly influence on the isotopic signature of its bone collagen. This influence is firstly produced in the initial material of the trophic chain but also may produce variations due to physiological changes caused by climatic changes in the species involved in this trophic chain. The cave bear (Ursus spelaeus ROSENMÜLLER) is a species of broad distribution in the European Pleistocene sites that has been studied from the isotopic point of view, trying to establish its diet type. For the moment, the results vary: though in most cases the isotopic values indicate a preferably herbivore diet type, differences exist between sites of different geographic zones and chronologies. Taking into account that climate influences on the cave bear's physiology through the physiological mechanism of hibernation, it is expected that in bears that lived in different climatic phases, the isotopic signatures will be also different. During hibernation a recycling of nitrogenised compounds is produced for protein synthesis, including bone collagen, so it is expected that the isotopic signature, at least of Nitrogen, will be altered with respect to the synthesized collagen when the bear is active and feeds normally. However, it is difficult to establish up to what extent the isotopic signatures due to hibernation or diet are overlapped. To study the physiological effect of hibernation on isotopic signatures we have selected bone remains of cave bears from populations whose chronologies correspond to different climatic moments, and in different ontogenetic stages, coming from Galician caves (NW of the Iberian Peninsula). Adult individuals show different isotopic signatures depending on their chronology. Juvenile

Comparative study of acetylcholinesterase and glutathione S-transferase activities of closely related cave and surface Asellus aquaticus (Isopoda: Crustacea.

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Anita Jemec

Full Text Available The freshwater isopod crustacean Asellus aquaticus has recently been developed as an emerging invertebrate cave model for studying evolutionary and developmental biology. Mostly morphological and genetic differences between cave and surface A. aquaticus populations have been described up to now, while scarce data are available on other aspects, including physiology. The purpose of this study was to advance our understanding of the physiological differences between cave A. aquaticus and its surface-dwelling counterparts. We sampled two surface populations from the surface section of the sinking Pivka River (central Slovenia, Europe, i.e. locality Pivka Polje, and locality Planina Polje, and one cave population from the subterranean section of the sinking Pivka River, i.e. locality Planina Cave. Animals were sampled in spring, summer and autumn. We measured the activities of acetylcholinesterase (AChE and glutathione S-transferase (GST in individuals snap-frozen in the field immediately after collection. Acetylcholinesterase is likely related to animals' locomotor activity, while GST activity is related to the metabolic activity of an organism. Our study shows significantly lower AChE and GST activities in the cave population in comparison to both surface A. aquaticus populations. This confirms the assumption that cave A. aquaticus have lower locomotor and metabolic activity than surface A. aquaticus in their respective natural environments. In surface A. aquaticus populations, seasonal fluctuations in GST activity were observed, while these were less pronounced in individuals from the more stable cave environment. On the other hand, AChE activity was generally season-independent in all populations. To our knowledge, this is the first study of its kind conducted in A. aquaticus. Our results show that among closely related cave and surface A. aquaticus populations also physiological differences are present besides the morphological and genetic

New Algorithm and Software (BNOmics) for Inferring and Visualizing Bayesian Networks from Heterogeneous Big Biological and Genetic Data.

Science.gov (United States)

Gogoshin, Grigoriy; Boerwinkle, Eric; Rodin, Andrei S

2017-04-01

Bayesian network (BN) reconstruction is a prototypical systems biology data analysis approach that has been successfully used to reverse engineer and model networks reflecting different layers of biological organization (ranging from genetic to epigenetic to cellular pathway to metabolomic). It is especially relevant in the context of modern (ongoing and prospective) studies that generate heterogeneous high-throughput omics datasets. However, there are both theoretical and practical obstacles to the seamless application of BN modeling to such big data, including computational inefficiency of optimal BN structure search algorithms, ambiguity in data discretization, mixing data types, imputation and validation, and, in general, limited scalability in both reconstruction and visualization of BNs. To overcome these and other obstacles, we present BNOmics, an improved algorithm and software toolkit for inferring and analyzing BNs from omics datasets. BNOmics aims at comprehensive systems biology-type data exploration, including both generating new biological hypothesis and testing and validating the existing ones. Novel aspects of the algorithm center around increasing scalability and applicability to varying data types (with different explicit and implicit distributional assumptions) within the same analysis framework. An output and visualization interface to widely available graph-rendering software is also included. Three diverse applications are detailed. BNOmics was originally developed in the context of genetic epidemiology data and is being continuously optimized to keep pace with the ever-increasing inflow of available large-scale omics datasets. As such, the software scalability and usability on the less than exotic computer hardware are a priority, as well as the applicability of the algorithm and software to the heterogeneous datasets containing many data types-single-nucleotide polymorphisms and other genetic/epigenetic/transcriptome variables, metabolite

The mass and energy balance of ice within the Eisriesenwelt cave, Austria

Directory of Open Access Journals (Sweden)

F. Obleitner

2011-03-01

Full Text Available Meteorological measurements were performed in a prominent ice cave (Eisriesenwelt, Austria during a full annual cycle. The data show the basic features of a dynamically ventilated cave system with a well distinguished winter and summer regime.

The calculated energy balance of the cave ice is largely determined by the input of long-wave radiation originating at the host rock surface. On average the turbulent fluxes withdraw energy from the surface. This is more pronounced during winter due to enhanced circulation and lower humidity. During summer the driving gradients reverse sign and the associated fluxes provide energy for melt.

About 4 cm of ice were lost at the measurement site during a reference year. This was due to some sublimation during winter, while the major loss resulted from melt during summer. Small amounts of accumulation occurred during spring due to refreezing of seepage water.

These results are largely based on employing a numerical mass and energy balance model. Sensitivity studies prove reliability of the calculated energy balance regarding diverse measurement uncertainties and show that the annual mass balance of the ice strongly depends on cave air temperature during summer and the availability of seepage water in spring.

Inference of gene regulatory networks with sparse structural equation models exploiting genetic perturbations.

Directory of Open Access Journals (Sweden)

Xiaodong Cai

Full Text Available Integrating genetic perturbations with gene expression data not only improves accuracy of regulatory network topology inference, but also enables learning of causal regulatory relations between genes. Although a number of methods have been developed to integrate both types of data, the desiderata of efficient and powerful algorithms still remains. In this paper, sparse structural equation models (SEMs are employed to integrate both gene expression data and cis-expression quantitative trait loci (cis-eQTL, for modeling gene regulatory networks in accordance with biological evidence about genes regulating or being regulated by a small number of genes. A systematic inference method named sparsity-aware maximum likelihood (SML is developed for SEM estimation. Using simulated directed acyclic or cyclic networks, the SML performance is compared with that of two state-of-the-art algorithms: the adaptive Lasso (AL based scheme, and the QTL-directed dependency graph (QDG method. Computer simulations demonstrate that the novel SML algorithm offers significantly better performance than the AL-based and QDG algorithms across all sample sizes from 100 to 1,000, in terms of detection power and false discovery rate, in all the cases tested that include acyclic or cyclic networks of 10, 30 and 300 genes. The SML method is further applied to infer a network of 39 human genes that are related to the immune function and are chosen to have a reliable eQTL per gene. The resulting network consists of 9 genes and 13 edges. Most of the edges represent interactions reasonably expected from experimental evidence, while the remaining may just indicate the emergence of new interactions. The sparse SEM and efficient SML algorithm provide an effective means of exploiting both gene expression and perturbation data to infer gene regulatory networks. An open-source computer program implementing the SML algorithm is freely available upon request.

Estimation of effective doses to cavers based on radon measurements carried out in seven caves of the Bakony Mountains in Hungary

International Nuclear Information System (INIS)

Kavasi, Norbert; Somlai, Janos; Szeiler, Gabor; Szabo, Balazs; Schafer, Istvan; Kovacs, Tibor

2010-01-01

Nowadays, as the practice of extreme sports is spreading, potholing is becoming more and more popular. As a result, both the number of cavers and the time spent in the caves have been on the rise. There are some cavers known to have spent some 5000 h in caves over a span of 10 years. In poorly ventilated caves, radon exhalated from cave rocks and deposits may accumulate and cause significant doses to cavers. In this study, the radon concentration in seven caves in the Bakony Mountains, Hungary, was measured by continuous and integrated measurement devices. Measured values for the different caves were rather different, and varied between 50 and 24,000 Bq m -3 . The average radon concentration over the measurement period was approximately 10,000 Bq m -3 in five of the seven caves inspected. By assuming an average of 470 h year -1 spent in caves, effective doses to cavers were estimated. The expected annual effective dose, in case of an equilibrium factor of 0.6, was 19.7 mSv.

Using MOEA with Redistribution and Consensus Branches to Infer Phylogenies.

Science.gov (United States)

Min, Xiaoping; Zhang, Mouzhao; Yuan, Sisi; Ge, Shengxiang; Liu, Xiangrong; Zeng, Xiangxiang; Xia, Ningshao

2017-12-26

In recent years, to infer phylogenies, which are NP-hard problems, more and more research has focused on using metaheuristics. Maximum Parsimony and Maximum Likelihood are two effective ways to conduct inference. Based on these methods, which can also be considered as the optimal criteria for phylogenies, various kinds of multi-objective metaheuristics have been used to reconstruct phylogenies. However, combining these two time-consuming methods results in those multi-objective metaheuristics being slower than a single objective. Therefore, we propose a novel, multi-objective optimization algorithm, MOEA-RC, to accelerate the processes of rebuilding phylogenies using structural information of elites in current populations. We compare MOEA-RC with two representative multi-objective algorithms, MOEA/D and NAGA-II, and a non-consensus version of MOEA-RC on three real-world datasets. The result is, within a given number of iterations, MOEA-RC achieves better solutions than the other algorithms.

Bullita cave system, Judbarra / Gregory Karst, tropical Australia; Sistemas de cuevas de Bullita, Judbarra / Gregory Karst, Australia tropical

Energy Technology Data Exchange (ETDEWEB)

Grimes, K. G.; Martini, J. E. J.

2016-07-01

In the monsoon tropics of northern Australia, Bullita Cave is the largest (123 km) of a group of extensive, horizontal, joint-controlled, dense network maze caves which are epikarst systems lying at shallow depth beneath a well-developed karrenfield. The Judbarra / Gregory Karst and its caves are restricted to the outcrop belt of the thin, sub-horizontal, Proterozoic Supplejack Dolostone. Karst is further restricted to those parts of the Supplejack that have escaped a secondary dolomitisation event. The karrenfield and underlying cave system are intimately related and have developed in step as the Supplejack surface was exposed by slope retreat. Both show a lateral zonation of development grading from youth to old age. Small cave passages originate under the recently exposed surface, and the older passages at the trailing edge become un roofed or destroyed as the, by then deeply-incised, karrenfield breaks up into isolated ruiniform blocks and pinnacles. Vertical development of the cave has been generally restricted to the epikarst zone by a 3m bed of impermeable and incompetent shale beneath the Supplejack which first perched the water-table, forming incipient phreatic passages above it, and later was eroded by vadose flow to form an extensive horizontal system of passages 10-20m below the karren surface. Some lower cave levels in underlying dolostone occur adjacent to recently incised surface gorges. Speleogenesis is also influenced by the rapid, diffuse, vertical inflow of storm water through the karrenfield, and by ponding of the still-aggressive water within the cave during the wet season dammed up by levees of sediment that accumulate beneath the degraded trailing edge of the karrenfield. The soil, and much biological activity, is not at the bare karren surface, but down on the cave floors, which aids epikarstic solution at depth rather than on the surface. (Author)

Causal Inference and Explaining Away in a Spiking Network

Science.gov (United States)

Moreno-Bote, Rubén; Drugowitsch, Jan

2015-01-01

While the brain uses spiking neurons for communication, theoretical research on brain computations has mostly focused on non-spiking networks. The nature of spike-based algorithms that achieve complex computations, such as object probabilistic inference, is largely unknown. Here we demonstrate that a family of high-dimensional quadratic optimization problems with non-negativity constraints can be solved exactly and efficiently by a network of spiking neurons. The network naturally imposes the non-negativity of causal contributions that is fundamental to causal inference, and uses simple operations, such as linear synapses with realistic time constants, and neural spike generation and reset non-linearities. The network infers the set of most likely causes from an observation using explaining away, which is dynamically implemented by spike-based, tuned inhibition. The algorithm performs remarkably well even when the network intrinsically generates variable spike trains, the timing of spikes is scrambled by external sources of noise, or the network is mistuned. This type of network might underlie tasks such as odor identification and classification. PMID:26621426

BagReg: Protein inference through machine learning.

Science.gov (United States)

Zhao, Can; Liu, Dao; Teng, Ben; He, Zengyou

2015-08-01

Protein inference from the identified peptides is of primary importance in the shotgun proteomics. The target of protein inference is to identify whether each candidate protein is truly present in the sample. To date, many computational methods have been proposed to solve this problem. However, there is still no method that can fully utilize the information hidden in the input data. In this article, we propose a learning-based method named BagReg for protein inference. The method firstly artificially extracts five features from the input data, and then chooses each feature as the class feature to separately build models to predict the presence probabilities of proteins. Finally, the weak results from five prediction models are aggregated to obtain the final result. We test our method on six public available data sets. The experimental results show that our method is superior to the state-of-the-art protein inference algorithms. Copyright © 2015 Elsevier Ltd. All rights reserved.

Visual recognition and inference using dynamic overcomplete sparse learning.

Science.gov (United States)

Murray, Joseph F; Kreutz-Delgado, Kenneth

2007-09-01

We present a hierarchical architecture and learning algorithm for visual recognition and other visual inference tasks such as imagination, reconstruction of occluded images, and expectation-driven segmentation. Using properties of biological vision for guidance, we posit a stochastic generative world model and from it develop a simplified world model (SWM) based on a tractable variational approximation that is designed to enforce sparse coding. Recent developments in computational methods for learning overcomplete representations (Lewicki & Sejnowski, 2000; Teh, Welling, Osindero, & Hinton, 2003) suggest that overcompleteness can be useful for visual tasks, and we use an overcomplete dictionary learning algorithm (Kreutz-Delgado, et al., 2003) as a preprocessing stage to produce accurate, sparse codings of images. Inference is performed by constructing a dynamic multilayer network with feedforward, feedback, and lateral connections, which is trained to approximate the SWM. Learning is done with a variant of the back-propagation-through-time algorithm, which encourages convergence to desired states within a fixed number of iterations. Vision tasks require large networks, and to make learning efficient, we take advantage of the sparsity of each layer to update only a small subset of elements in a large weight matrix at each iteration. Experiments on a set of rotated objects demonstrate various types of visual inference and show that increasing the degree of overcompleteness improves recognition performance in difficult scenes with occluded objects in clutter.

An efficient forward–reverse expectation-maximization algorithm for statistical inference in stochastic reaction networks

KAUST Repository

Bayer, Christian; Moraes, Alvaro; Tempone, Raul; Vilanova, Pedro

2016-01-01

then employ this SRN bridge-generation technique to the statistical inference problem of approximating reaction propensities based on discretely observed data. To this end, we introduce a two-phase iterative inference method in which, during phase I, we solve

Electronic microscopy and EDX characterization of teotihuacan prehispanic mortar from the cave under the sun pyramid

Energy Technology Data Exchange (ETDEWEB)

Martinez, T. [Faculty of Chemistry, National University of Mexico, Building D, CU (O4510) Mexico, D.F. (Mexico)]. E-mail: tmc@servidor.unam.mx; Martinez, G. [Coordinacion Nacional de Conservacion del Patrimonio Cultural. Xicontencatl y General Anaya s/n. (04120) Mexico, D.F. (Mexico); Mendoza, D. [National Institute of Nuclear Research.. Carr. Mexico-Toluca Km 36.5 (52045), Salazar, Ocoyoacac, Edo. de Mexico (Mexico); Juarez, F. [Institute of Geophysics, National University of Mexico, Circuito Institutos, CU (04510) Mexico, D.F. (Mexico); Cabrera, L. [Faculty of Chemistry, National University of Mexico, Building D, CU (O4510) Mexico, D.F. (Mexico)

2005-12-01

A cave (102 m long) under the structure of the Sun pyramid of the prehispanic Teotihuacan City indicates the importance of the pyramid. Studies of the cave mortar samples using energy dispersive X-ray (EDX) fluorescence, scanning electron microscopy (SEM) and X-ray diffraction (XRD) showed no difference in the chemical elemental composition. The elements can be distributed in three groups: major, minor and trace elements. The minerals identified were compatible with the origins of the cave and with the magnetic pattern.

Exposure to radon in caves and abandoned mines

International Nuclear Information System (INIS)

Dixon, D.W.

1996-01-01

The significance for health of exposure to radon daughters during leisure excursions in discussed mines or caves is considered for visitors with interests in speleology, mineral collecting, mining history and youth training. General members of the public might also enter tunnels. Potential annual exposures based on radon measurements in various mines and caves are estimated and it is concluded that the annual exposure of individuals who undertake frequent and prolonged trips to underground systems might exceed 10 6 Bq h m -3 . Exposures to general members of the public are likely to be much lower. The National Radiological Protection Board has developed proposals for a coherent and comprehensive scheme to promote dose limitation in a wide range of circumstances. These are described, with current initiatives on consultation with National Associations, local Government and many special interest groups. (author)

Accelerating inference for diffusions observed with measurement error and large sample sizes using approximate Bayesian computation

DEFF Research Database (Denmark)

Picchini, Umberto; Forman, Julie Lyng

2016-01-01

a nonlinear stochastic differential equation model observed with correlated measurement errors and an application to protein folding modelling. An approximate Bayesian computation (ABC)-MCMC algorithm is suggested to allow inference for model parameters within reasonable time constraints. The ABC algorithm......In recent years, dynamical modelling has been provided with a range of breakthrough methods to perform exact Bayesian inference. However, it is often computationally unfeasible to apply exact statistical methodologies in the context of large data sets and complex models. This paper considers...... applications. A simulation study is conducted to compare our strategy with exact Bayesian inference, the latter resulting two orders of magnitude slower than ABC-MCMC for the considered set-up. Finally, the ABC algorithm is applied to a large size protein data. The suggested methodology is fairly general...

Scalable inference for stochastic block models

KAUST Repository

Peng, Chengbin

2017-12-08

Community detection in graphs is widely used in social and biological networks, and the stochastic block model is a powerful probabilistic tool for describing graphs with community structures. However, in the era of "big data," traditional inference algorithms for such a model are increasingly limited due to their high time complexity and poor scalability. In this paper, we propose a multi-stage maximum likelihood approach to recover the latent parameters of the stochastic block model, in time linear with respect to the number of edges. We also propose a parallel algorithm based on message passing. Our algorithm can overlap communication and computation, providing speedup without compromising accuracy as the number of processors grows. For example, to process a real-world graph with about 1.3 million nodes and 10 million edges, our algorithm requires about 6 seconds on 64 cores of a contemporary commodity Linux cluster. Experiments demonstrate that the algorithm can produce high quality results on both benchmark and real-world graphs. An example of finding more meaningful communities is illustrated consequently in comparison with a popular modularity maximization algorithm.

Bermuda: Search for Deep Water Caves 2009 on the R/V Endurance between 20090905 and 20090930

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Deep-water marine caves are one of the Earth's last largely unexplored frontiers of undiscovered fauna (animal life). More than 150 limestone caves are known to...

Seasonal variations of radon and the radiation exposure levels in Nerja cave, Spain

International Nuclear Information System (INIS)