WorldWideScience

Sample records for causing stripe rust

  1. EPIDEMIOLOGY AND CONTROL OF STRIPE RUST ON WHEAT

    Science.gov (United States)

    Stripe rust of wheat, caused by Puccinia striiformis f. sp. tritici, is one of the most important diseases of wheat worldwide. This review presents basic and recent information on stripe rust epidemiology, pathogen virulence changes and population structure, and movement of the pathogen in the Unit...

  2. Evidence for Increased Aggressiveness in a Recent Widespread Strain of Puccinia striiformis f. sp. tritici Causing Stripe Rust of Wheat

    DEFF Research Database (Denmark)

    Milus, Eugene A; Kristensen, Kristian; Hovmøller, Mogens S

    2009-01-01

    Stripe rust (yellow rust) of wheat, caused by Puccinia striiformis f. sp. tritici, has become more severe in eastern United States, Australia, and elsewhere since 2000. Recent research has shown that this coincided with a global spread of two closely related strains that were similar based on...... virulence phenotype and amplified fragment length polymorphism. The objective of this research was to quantify differences in aggressiveness among isolates representative of the pre-2000 and post-2000 populations. Representative isolates were evaluated at low (10 to 18°C) and high (12 to 28°C) temperature....... At the low temperature regime, new isolates sporulated 2.1 days (16%) sooner, grew 0.3 mm per day (18%) faster, produced 999 (140%) more spores per inoculation site per day, and produced 6.5 (71%) more spores per mm2 of lesion per day compared with old isolates. At the high temperature regime, new...

  3. QTL mapping of adult-plant resistances to stripe rust and leaf rust in Chinese wheat cultivar Bainong 64.

    Science.gov (United States)

    Ren, Yan; Li, Zaifeng; He, Zhonghu; Wu, Ling; Bai, Bin; Lan, Caixia; Wang, Cuifen; Zhou, Gang; Zhu, Huazhong; Xia, Xianchun

    2012-10-01

    Stripe rust and leaf rust, caused by Puccinia striiformis Westend. f. sp. tritici Erikss. and P. triticina, respectively, are devastating fungal diseases of common wheat (Triticum aestivum L.). Chinese wheat cultivar Bainong 64 has maintained acceptable adult-plant resistance (APR) to stripe rust, leaf rust and powdery mildew for more than 10 years. The aim of this study was to identify quantitative trait loci/locus (QTL) for resistance to the two rusts in a population of 179 doubled haploid (DH) lines derived from Bainong 64 × Jingshuang 16. The DH lines were planted in randomized complete blocks with three replicates at four locations. Stripe rust tests were conducted using a mixture of currently prevalent P. striiformis races, and leaf rust tests were performed with P. triticina race THTT. Leaf rust severities were scored two or three times, whereas maximum disease severities (MDS) were recorded for stripe rust. Using bulked segregant analysis (BSA) and simple sequence repeat (SSR) markers, five independent loci for APR to two rusts were detected. The QTL on chromosomes 1BL and 6BS contributed by Bainong 64 conferred resistance to both diseases. The loci identified on chromosomes 7AS and 4DL had minor effects on stripe rust response, whereas another locus, close to the centromere on chromosome 6BS, had a significant effect only on leaf rust response. The loci located on chromosomes 1BL and 4DL also had significant effects on powdery mildew response. These were located at the same positions as the Yr29/Lr46 and Yr46/Lr67 genes, respectively. The multiple disease resistance locus for APR on chromosome 6BS appears to be new. All three genes and their closely linked molecular markers could be used in breeding wheat cultivars with durable resistance to multiple diseases. PMID:22806327

  4. Identification and mapping of leaf, stem and stripe rust resistance quantitative trait loci and their interactions in durum wheat

    OpenAIRE

    Singh, A.; Pandey, M. P.; SINGH, A.K.; Knox, R. E.; Ammar, K.; Clarke, J. M.; Clarke, F. R.; R. P. Singh; Pozniak, C. J.; DePauw, R. M.; McCallum, B. D.; Cuthbert, R. D.; Randhawa, H. S.; Fetch, T. G.

    2012-01-01

    Leaf rust (Puccinia triticina Eriks.), stripe rust (Puccinia striiformis f. tritici Eriks.) and stem rust (Puccinia graminis f. sp. tritici) cause major production losses in durum wheat (Triticum turgidum L. var. durum). The objective of this research was to identify and map leaf, stripe and stem rust resistance loci from the French cultivar Sachem and Canadian cultivar Strongfield. A doubled haploid population from Sachem/Strongfield and parents were phenotyped for seedling reaction to leaf ...

  5. Identification and mapping of leaf, stem and stripe rust resistance quantitative trait loci and their interactions in durum wheat.

    Science.gov (United States)

    Singh, A; Pandey, M P; Singh, A K; Knox, R E; Ammar, K; Clarke, J M; Clarke, F R; Singh, R P; Pozniak, C J; Depauw, R M; McCallum, B D; Cuthbert, R D; Randhawa, H S; Fetch, T G

    2013-02-01

    Leaf rust (Puccinia triticina Eriks.), stripe rust (Puccinia striiformis f. tritici Eriks.) and stem rust (Puccinia graminis f. sp. tritici) cause major production losses in durum wheat (Triticum turgidum L. var. durum). The objective of this research was to identify and map leaf, stripe and stem rust resistance loci from the French cultivar Sachem and Canadian cultivar Strongfield. A doubled haploid population from Sachem/Strongfield and parents were phenotyped for seedling reaction to leaf rust races BBG/BN and BBG/BP and adult plant response was determined in three field rust nurseries near El Batan, Obregon and Toluca, Mexico. Stripe rust response was recorded in 2009 and 2011 nurseries near Toluca and near Njoro, Kenya in 2010. Response to stem rust was recorded in field nurseries near Njoro, Kenya, in 2010 and 2011. Sachem was resistant to leaf, stripe and stem rust. A major leaf rust quantitative trait locus (QTL) was identified on chromosome 7B at Xgwm146 in Sachem. In the same region on 7B, a stripe rust QTL was identified in Strongfield. Leaf and stripe rust QTL around DArT marker wPt3451 were identified on chromosome 1B. On chromosome 2B, a significant leaf rust QTL was detected conferred by Strongfield, and at the same QTL, a Yr gene derived from Sachem conferred resistance. Significant stem rust resistance QTL were detected on chromosome 4B. Consistent interactions among loci for resistance to each rust type across nurseries were detected, especially for leaf rust QTL on 7B. Sachem and Strongfield offer useful sources of rust resistance genes for durum rust breeding. PMID:23396999

  6. Comparative Analysis of Transcripts Associated to All-Stage Resistance and Adult-Plant Resistance to Stripe Rust in Wheat

    Science.gov (United States)

    Stripe rust, caused by Puccinia striiformis f. sp. tritici, is a destructive disease of wheat worldwide. Genetic resistance is the preferred method for controlling stripe rust, of which two major types are race-specific and race non-specific resistance. Race-specific resistance includes the qualitat...

  7. Genome-wide association mapping for resistance to leaf and stripe rust in winter-habit hexaploid wheat landraces

    Science.gov (United States)

    Leaf rust, caused by Puccinia triticina (Pt), and stripe rust, caused by P. striiformis f. sp. tritici (Pst), are destructive foliar diseases of wheat worldwide. Breeding for disease resistance is the preferred strategy of managing both diseases. The continued emergence of new races of Pt and Pst re...

  8. Genes for resistance to stripe rust on chromosome 2B and their application in wheat breeding

    Institute of Scientific and Technical Information of China (English)

    Peigao Luo; Xueyun Hu; Huaiyu Zhang; Zhenglong Ren

    2009-01-01

    Stripe rust,caused by Puccinia striiformis f.sp.tritici,is one of the most damaging diseases of wheat worldwide.Growing resistant cultivars is the most economic and environmental friendly way to control the disease.There are many resistance genes to stripe rust located on wheat chromosome 2B.Here,we propose a strategy to construct the recombinant wheat chromosome 2B with multiple resistances to stripe rust by making crosses between wheat lines or cultivars carrying Yr genes and using marker-assisted selection,based on the reported information about resistance spectrum,chromosomal location,and linked markers of the genes.Pyramiding the resistance genes on 2B would afford a valuable strategy to control the disease by cultivating varieties with durable resistance.The possibility,efficiency,and prospect of the suggested strategy are reviewed in the paper.

  9. Ultrastructure of Slow-Rusting Expression of Wheat to Stripe Rust

    Institute of Scientific and Technical Information of China (English)

    MA Qing; SHANG Hong-sheng; QIANG Lei; XIE Fang-qin; SUN Hui

    2005-01-01

    The ultrastructure of wheat cultivars with slow-rusting resistance expression to the stripe rust, Puccinia striiformis, was studied through TEM. The results show that slow-rusting has the same hypersensitive response characters with the low infection type resistance, but the mesophyll cell necrotized less in number, thereby only partially inhibiting the extension of rust fungus, and the fungus being inhibited and necrosed slighter in degree. Apart from the occurrence of hypersensitiveness, the response of the host cells in slow-rusting wheat cultivars to the infection of fungus also produces structural materials associated with defense reaction, but distinctly less than that in resistant cultivar. Thus, it is suggested that the slow-rusting resistance might have a similar mechanism with the low infection type resistance of race specificity,but with lower intensity.

  10. Partial resistance to stripe rust and its effect on sustainability of wheat yield

    International Nuclear Information System (INIS)

    Stripe rust (Puccinia striiformis Westend. f. sp. tritici) poses a serious threat to wheat production in cooler areas of Pakistan. The 70% area of wheat in Pakistan is prone to stripe rust disease. It can cause 10-17% yield losses if susceptible cultivars are planted under favorable conditions. Level of partial plant resistance in bread wheat and its impact on sustainable wheat production was studied at the National Agricultural Research Centre, Islamabad under natural conditions in the field. Eleven Pakistani commercial wheat cultivars/advance lines including check (Inqalab 91) were assessed for the level of partial resistance against stripe rust using Area Under the Disease Progress Curve (AUDPC), disease severity (DS) and epidemic growth rate in comparison with wheat cultivar, Inqalab 91. During 2007 cropping season, natural epidemic was developed and relative AUDPC was recorded from 0 to 100% whereas the 2008 cropping season was dry and no stripe rust appeared. Two advanced lines (NR 268 and NR 285) showed the infection type (IT) less than 7 (incompatible reaction) to the mixture of prevailing stripe rust inoculums. Very low level of DS and AUDPC were recorded in the remaining cultivars/lines indicating a high level of partial resistance to stripe rust compared to the susceptible check cultivar, Inqalab 91. Among eight cultivars/lines that showed compatible type of reaction (IT greater then equal to 7), one was resistant (relative AUDPC = 20% of Inqalab 91) and six showed very high resistance levels (relative AUDPC greater then equal to 5%). Maximum level of resistance (relative AUDPC = 0.1%) was observed in advanced line, NR 271. The wheat cultivars/lines that showed a slow disease development (low DS and AUDPC), could be considered as -1 partially resistant for stripe rust infection. The yield (2178 kg ha) of susceptible check cultivar Inqalab-91 during 2007 was reduced to 45% as -1 compared to its yield (3945 kg ha) in epidemic free year (2008). Thus the use

  11. High genome heterozygosity and endemic genetic recombination in the wheat stripe rust fungus

    Science.gov (United States)

    Stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is one of the most destructive diseases of wheat. Here we report a 110-Mb draft sequence of Pst isolate CY32, obtained using a ‘fosmid-to-fosmid’ strategy, to better understand its race evolution and pathogenesis. The Pst genome is hi...

  12. Potential oversummering and overwintering regions for the wheat stripe rust pathogen in the contiguous United States

    Science.gov (United States)

    Epidemics of wheat stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), are more frequent in the regions where Pst can oversummer and overwinter. Regions for potential oversummering and overwintering of Pst were determined in the contiguous United States using a survival index (SI) rang...

  13. Characterization of resistance to stripe rust in contemporary cultivars and lines of winter wheat

    Science.gov (United States)

    Stripe rust, caused by Puccinia striiformis f. sp. tritici, has been an important disease of winter wheat in the eastern United States since 2000 when a new strain of the pathogen emerged. The new strain was more aggressive and better adapted to warmer temperatures than the old strain, and overcame ...

  14. Identification of wheat-Thinopyrum intermedium alien disomic addition lines conferring resistance to stripe rust

    Science.gov (United States)

    Thinopyrum intermedium carries many useful traits for wheat genetic improvement. To identify genes conferring resistance to stripe rust caused by Puccinia striiformis f. sp. tritici in Zhong 4 (Z4) derived from a cross between common wheat and Th. intermedium, a cross was made between Z4 and a ‘Chin...

  15. Characterization and mapping of cryptic alien introgression from Aegilops geniculata with new leaf rust and stripe rust resistance genes Lr57 and Yr40 in wheat.

    Science.gov (United States)

    Leaf rust and stripe rust are important foliar diseases of wheat worldwide. Leaf rust and stripe rust resistant introgression lines were developed by induced homoeologous chromosome pairing between wheat chromosome 5D and 5Mg of Aegilops geniculata (UgMg). Characterization of rust resistant BC2F5 a...

  16. Genome-wide identification of QTLs conferring high-temperature adult-plant (HTAP) resistance to stripe rust (Puccinia striiformis f. sp. tritici) in wheat

    Science.gov (United States)

    High-temperature adult-plant (HTAP) resistance to stripe rust (caused by Puccinia striiformis f. sp. tritici) is a durable type of resistance in wheat. The objective of this study was to identify quantitative trait loci (QTL) conferring HTAP resistance to stripe rust in a population consisting of 16...

  17. Evaluation of Pakistan wheat germplasms for stripe rust resistance using molecular markers.

    Science.gov (United States)

    Sobia, Tabassum; Muhammad, Ashraf; Chen, XianMing

    2010-09-01

    Wheat production in Pakistan is seriously constrained due to rust diseases and stripe rust (yellow) caused by Puccinia striiformis f. sp. tritici, which could limit yields. Thus development and cultivation of genetically diverse and resistant varieties is the most sustainable solution to overcome these diseases. The first objective of the present study was to evaluate 100 Pakistan wheat cultivars that have been grown over the past 60 years. These cultivars were inoculated at the seedling stage with two virulent stripe rust isolates from the United States and two from Pakistan. None of the wheat cultivars were resistant to all tested stripe rust isolates, and 16% of cultivars were susceptible to the four isolates at the seedling stage. The data indicated that none of the Pakistan wheat cultivars contained either Yr5 or Yr15 genes that were considered to be effective against most P. striiformis f. sp. tritici isolates from around the world. Several Pakistan wheat cultivars may have gene Yr10, which is effective against isolate PST-127 but ineffective against PST-116. It is also possible that these cultivars may have other previously unidentified genes or gene combinations. The second objective was to evaluate the 100 Pakistan wheat cultivars for stripe rust resistance during natural epidemics in Pakistan and Washington State, USA. It was found that a higher frequency of resistance was present under field conditions compared with greenhouse conditions. Thirty genotypes (30% of germplasms) were found to have a potentially high temperature adult plant (HTAP) resistance. The third objective was to determine the genetic diversity in Pakistan wheat germplasms using molecular markers. This study was based on DNA fingerprinting using resistance gene analog polymorphism (RGAP) marker analysis. The highest polymorphism detected with RGAP primer pairs was 40%, 50% and 57% with a mean polymorphism of 36%. A total of 22 RGAP markers were obtained in this study. RGAP, simple

  18. Identification and Validation of a Major Quantitative Trait Locus for Slow-rusting Resistance to Stripe Rust in Wheat

    Institute of Scientific and Technical Information of China (English)

    Xiaohua Cao; Jianghong Zhou; Xiaoping Gong; Guangyao Zhao; Jizeng Jia; Xiaoquan Qi

    2012-01-01

    Stripe (yellow) rust,caused by Puccinia striiformis Westend.f.sp.tritici Eriks (Pst),is one of the most important wheat (Triticum aestivum L.) diseases and causes significant yield losses.A recombinant inbred (RI) population derived from a cross between Yanzhan 1 and Xichang 76-9 cultivars was evaluated for resistance to wheat stripe rust strain CYR32 at both the seedling and adult plant stages.Four resistance quantitative trait loci (QTLs) were detected in this population,in which the major one,designated as Yrq1,was mapped on chromosome 2DS.The strategy of using the Brachypodium distachyon genome,wheat expressed sequence tags and a draft DNA sequences (scaffolds) of the D-genome (Aegilops tauschii Coss.) for the development of simple sequence repeat (SSR) markers was successfully used to identify 147 SSRs in hexaploid wheat.Of the 19 polymorphic SSRs in the RI population,17 SSRs were mapped in the homeologous group 2 chromosomes near Yrq1 region and eight SSRs were genetically mapped in the 2.7 cM region of Yrq1,providing abundant DNA markers for fine-mapping of Yrq1 and marker-assisted selection in wheat breeding program.The effectiveness of Yrq1 was validated in an independent population,indicating that this resistance QTL can be successfully transferred into a susceptible cultivar for improvement of stripe rust resistance.

  19. Molecular Screening and Resistance Evaluation of American Wheat Cultivars to Chinese Stripe Rust Races

    Institute of Scientific and Technical Information of China (English)

    BAI Yu-lu; ZHANG Chun-yu; SUN Quan; LIN Feng; CUI Na; XU Shi-chang; GAO Yang; XU Xiao-dan

    2010-01-01

    Stripe rust,caused by Puccinia striiformis f.sp.tritici,is one of the major diseases of wheat in China.In order to asses the resistance levels and existing Yr genes among 59 wheat cultivars (lines) from the Pacific Northwest (PNW) of the United States,to provide resistance resources for genetic improvement of wheat stripe rust resistance in China,59 wheat cultivars (lines) from PNW of the United States were infected by 3 mixed races of predominant Chinese stripe rust races CRY31,CRY32,and CRY33 to evaluate their resistance at seedling and adult plant stages,and screened with molecular markers tightly linked to currently effective all-stage resistance genes Yr10,Yr15 and adult plant resistance genes Yr18,Yr39.Of 59 American cultivars (lines),five cultivars (lines),Expresso,02W50076,ACS52610,WA008012,and WA00801833,had all-stage resistance,showing resistance to mixed races of CRY31,CRY32,and CRY33 at both seedling and adult plant stages.33 cultivars (lines) had adult plant resistance,only showing resistance to stripe rust at adult stage.Based on the molecular screening,none of the 59 PNW cultivars (lines) had the polymorphic bands of linked markers to Yr10.There were 12,33 and 29 cultivars (lines) which had polymorphic bands of linked markers to Yr15,Yr18 and Yr39,accounting for 20,55 and 49% of the 59 PNW cultivars (lines),respectively.All these results suggested that Yr15,Yr18 and Yr39 were widespread among PNW cultivars (cultivars) and could be utilized in Chinese wheat stripe rust resistance breeding.

  20. [SSR mapping of stripe rust resistance gene from Ae. tauschii].

    Science.gov (United States)

    Zhang, Hai-Quan; Jia, Ji-Zeng; Yang, Hong; Zhang, Bao-Shi

    2008-04-01

    A dominant wheat stripe rust resistance gene, temporarily designated as YrY201, was identified in an accession Y201 of Aegilops tauschii. By bulk segregation analysis, three microsatellite markers Xgwm273b, Xgwm37 and Wmc14 were found to be linked to YrY201 with genetic distance of 11.5, 5.8 and 10.9 cM , respectively. According to the locations of the linked markers, the resistance gene was located on chromosome 7DL. Based on the chromosomal location and the resistance pattern of the gene, we proposed that YrY201 was a novel stripe rust resistance gene, and could be selected by marker-assisted selection. PMID:18424421

  1. Molecular mapping of a gene for stripe rust resistance in spring wheat cultivar IDO377s.

    Science.gov (United States)

    Cheng, P; Chen, X M

    2010-06-01

    Stripe rust, caused by Puccinia striiformis f. sp. tritici, is one of the most important diseases of wheat worldwide. The best strategy to control stripe rust is to grow resistant cultivars. One such cultivar resistant to most races in North America is 'IDO377s'. To study the genetics of its resistance this spring wheat cultivar was crossed with 'Avocet Susceptible' (AvS). Seedlings of the parents, F(2) plants, and F(3) lines were tested under controlled greenhouse conditions with races PST-43 and PST-45 of P. striiformis f. sp. tritici. IDO377s carries a single dominant gene for resistance. Resistance gene analog polymorphism (RGAP) and simple sequence repeat (SSR) techniques were used to identify molecular markers linked to the resistance gene. A total of ten markers were identified, two of which flanked the locus at 4.4 and 5.5 cM. These flanking RGAP markers were located on chromosome 2B with nulli-tetrasomic lines of 'Chinese Spring'. Their presence in the ditelosomic 2BL line localized them to the long arm. The chromosomal location of the resistance gene was further confirmed with two 2BL-specific SSR markers and a sequence tagged site (STS) marker previously mapped to 2BL. Based on the chromosomal location, reactions to various races of the pathogen and tests of allelism, the IDO377s gene is different from all previously designated genes for stripe rust resistance, and is therefore designated Yr43. A total of 108 wheat breeding lines and cultivars with IDO377s or related cultivars in their parentage were assayed to assess the status of the closest flanking markers and to select lines carrying Yr43. The results showed that the flanking markers were reliable for assisting selection of breeding lines carrying the resistance gene. A linked stripe rust resistance gene, previously identified as YrZak, in cultivar Zak was designated Yr44. PMID:20198466

  2. Allelic analysis of stripe rust resistance genes on wheat chromosome 2BS.

    Science.gov (United States)

    Luo, P G; Hu, X Y; Ren, Z L; Zhang, H Y; Shu, K; Yang, Z J

    2008-11-01

    Stripe rust, caused by Puccinia striiormis Westend f. sp. tritici, is one of the most important foliar diseases of wheat (Triticum aestivum L.) worldwide. Stripe rust resistance genes Yr27, Yr31, YrSp, YrV23, and YrCN19 on chromosome 2BS confer resistance to some or all Chinese P. striiormis f. sp. tritici races CYR31, CYR32, SY11-4, and SY11-14 in the greenhouse. To screen microsatellite (SSR) markers linked with YrCN19, F1, F2, and F3 populations derived from cross Ch377/CN19 were screened with race CYR32 and 35 SSR primer pairs. Linkage analysis indicated that the single dominant gene YrCN19 in cultivar CN19 was linked with SSR markers Xgwm410, Xgwm374, Xwmc477, and Xgwm382 on chromosome 2BS with genetic distances of 0.3, 7.9, 12.3, and 21.2 cM, respectively. Crosses of CN19 with wheat lines carrying other genes on chromosome 2B showed that all were located at different loci. YrCN19 is thus different from the other reported Yr genes in chromosomal location and resistance response and was therefore named Yr41. Prospects and strategies of using Yr41 and other Yr genes in wheat improvement for stripe rust resistance are discussed. PMID:18956025

  3. Evaluation of Pakistan wheat germplasms for stripe rust resistance using molecular markers

    Institute of Scientific and Technical Information of China (English)

    Sobia; TABASSUM; Muhammad; ASHRAF; CHEN; XianMing

    2010-01-01

    Wheat production in Pakistan is seriously constrained due to rust diseases and stripe rust (yellow) caused by Puccinia striiformis f.sp.tritici,which could limit yields.Thus development and cultivation of genetically diverse and resistant varieties is the most sustainable solution to overcome these diseases.The first objective of the present study was to evaluate 100 Pakistan wheat cultivars that have been grown over the past 60 years.These cultivars were inoculated at the seedling stage with two virulent stripe rust isolates from the United States and two from Pakistan.None of the wheat cultivars were resistant to all tested stripe rust isolates,and 16% of cultivars were susceptible to the four isolates at the seedling stage.The data indicated that none of the Pakistan wheat cultivars contained either Yr5 or Yr15 genes that were considered to be effective against most P.striiformis f.sp.tritici isolates from around the world.Several Pakistan wheat cultivars may have gene Yr10,which is effective against isolate PST-127 but ineffective against PST-116.It is also possible that these cultivars may have other previously unidentified genes or gene combinations.The second objective was to evaluate the 100 Pakistan wheat cultivars for stripe rust resistance during natural epidemics in Pakistan and Washington State,USA.It was found that a higher frequency of resistance was present under field conditions compared with greenhouse conditions.Thirty genotypes (30% of germplasms) were found to have a potentially high temperature adult plant (HTAP) resistance.The third objective was to determine the genetic diversity in Pakistan wheat germplasms using molecular markers.This study was based on DNA fingerprinting using resistance gene analog polymorphism (RGAP) marker analysis.The highest polymorphism detected with RGAP primer pairs was 40%,50% and 57% with a mean polymorphism of 36%.A total of 22 RGAP markers were obtained in this study.RGAP,simple sequence repeat (SSR) and

  4. Molecular mapping of stripe rust resistance gene YrSN104 in Chinese wheat line Shaannong 104.

    Science.gov (United States)

    Asad, Muhammad Azeem; Xia, Xianchun; Wang, Chengshe; He, Zhonghu

    2012-08-01

    Stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is a serious yield-limiting factor for wheat production worldwide. The objective of this study was to identify and map a stripe rust resistance gene in wheat line Shaannong 104 using SSR markers. F(1), F(2) and F(3) populations from Shaannong 104/Mingxian 169 were inoculated with Chinese Pst race CYR32 in a greenhouse. Shaannong 104 carried a single dominant gene, YrSN104. Six potential polymorphic SSR markers identified in bulk segregant analysis were used to genotype F(2) and F(3) families. YrSN104 was closely linked with all six SSR markers on chromosome 1BS with genetic distances of 2.0 cM (Xgwm18, Xgwm273, Xbarc187), 2.6 cM (Xgwm11, Xbarc137) and 5.9 cM (Xbarc240). Pedigree analysis, pathogenicity tests using 26 Pst races, haplotyping of associated markers on isogenic lines carrying known stripe rust resistance genes, and associations with markers suggested that YrSN104 was a new resistance gene or an allele at the Yr24/Yr26 locus on chromosome 1BS. Deployment of YrSN104 singly or in combination to elite genotypes could play an effective role to lessen yield losses caused by stripe rust. PMID:22967144

  5. Molecular mapping of a stripe rust resistance gene in spring wheat cultivar Zak.

    Science.gov (United States)

    Sui, X X; Wang, M N; Chen, X M

    2009-10-01

    Stripe rust (yellow rust), caused by Puccinia striiformis f. sp. tritici, is one of the most devastating foliar diseases of wheat (Triticum aestivum) worldwide. Growing resistant cultivars is the best approach for control of the disease. Although the stripe rust resistance in spring wheat cv. Zak has been circumvented by a group of races of the pathogen predominant in the United States since 2000, the resistance genes in Zak were unknown. To identify and map the genes for resistance to stripe rust, Zak was crossed with susceptible wheat genotype 'Avocet Susceptible'. Seedlings of the parents and F1, F2, and F3 progeny were tested with P. striiformis f. sp. tritici races PST-43 and PST-45 under controlled greenhouse conditions. Genetic analysis determined that Zak has a single dominant gene, designated as YrZak, conferring race-specific all-stage resistance. Resistance gene analog polymorphism (RGAP), simple sequence repeat (SSR), and sequence-tagged site (STS) techniques were used to identify molecular markers linked to YrZak. A linkage group of three RGAP, three SSR, and three STS markers was constructed for YrZak using 205 F3 lines. Amplification of the complete set of Chinese Spring nulli-tetrasomic lines with RGAP marker Xwgp102 indicated that YrZak is present on chromosome 2B. The three SSR markers further mapped YrZak to the long arm of chromosome 2B. Amplification of chromosome 2B deletion lines with SSR marker Xgwm501 further confirmed that YrZak is on chromosome 2BL. To determine the genetic distance between YrZak and Yr5, which also is present on chromosome 2BL, 300 F2 plants from cross Zak/Yr5 were tested with PST-43. Six susceptible plants were identified from the F2 population, indicating that YrZak and Yr5 are approximately 42 centimorgans apart. The results of race reactions and chromosomal locations indicated that YrZak is different from previously identified genes for resistance to stripe rust. This gene should be useful in monitoring virulence

  6. Genetics of adult plant stripe rust resistance in CSP44, a selection from Australian wheat

    Indian Academy of Sciences (India)

    Renu Khanna; U. K. Bansal; R. G. Saini

    2005-12-01

    Wheat line CSP44, a selection from an Australian bread wheat cultivar Condor, has shown resistance to stripe rust in India since the last twenty years. Seedlings and adult plants of CSP44 showed susceptible infection types against stripe rust race 46S119 but displayed average terminal disease severity of 2.67 on adult plants against this race as compared to 70.33 of susceptible Indian cultivar, WL711. This suggests the presence of nonhypersensitive adult plant stripe rust resistance in the line CSP44. The evaluation of F1, F2 and F3 generations and F6 SSD families from the cross of CSP44 with susceptible wheat cultivar WL711 for stripe rust severity indicated that the resistance in CSP44 is based on two genes showing additive effect. One of these two genes is Yr18 and the second gene is not yet described.

  7. Genome-Wide Association Mapping for Resistance to Leaf and Stripe Rust in Winter-Habit Hexaploid Wheat Landraces.

    Directory of Open Access Journals (Sweden)

    Albert Kertho

    Full Text Available Leaf rust, caused by Puccinia triticina (Pt, and stripe rust, caused by P. striiformis f. sp. tritici (Pst, are destructive foliar diseases of wheat worldwide. Breeding for disease resistance is the preferred strategy of managing both diseases. The continued emergence of new races of Pt and Pst requires a constant search for new sources of resistance. Here we report a genome-wide association analysis of 567 winter wheat (Triticum aestivum landrace accessions using the Infinium iSelect 9K wheat SNP array to identify loci associated with seedling resistance to five races of Pt (MDCL, MFPS, THBL, TDBG, and TBDJ and one race of Pst (PSTv-37 frequently found in the Northern Great Plains of the United States. Mixed linear models identified 65 and eight significant markers associated with leaf rust and stripe rust, respectively. Further, we identified 31 and three QTL associated with resistance to Pt and Pst, respectively. Eleven QTL, identified on chromosomes 3A, 4A, 5A, and 6D, are previously unknown for leaf rust resistance in T. aestivum.

  8. Introgression of chromosome 3Ns from Psathyrostachys huashanica into wheat specifying resistance to stripe rust.

    Science.gov (United States)

    Kang, Houyang; Wang, Yi; Fedak, George; Cao, Wenguang; Zhang, Haiqin; Fan, Xing; Sha, Lina; Xu, Lili; Zheng, Youliang; Zhou, Yonghong

    2011-01-01

    Wheat stripe rust is a destructive disease in the cool and humid wheat-growing areas of the world. Finding diverse sources of stripe rust resistance is critical for increasing genetic diversity of resistance for wheat breeding programs. Stripe rust resistance was identified in the alien species Psathyrostachys huashanica, and a wheat-P. huashanica amphiploid line (PHW-SA) with stripe rust resistance was reported previously. In this study, a P. huashanica 3Ns monosomic addition line (PW11) with superior resistance to stripe rust was developed, which was derived from the cross between PHW-SA and wheat J-11. We evaluated the alien introgressions PW11-2, PW11-5 and PW11-8 which were derived from line PW11 for reaction to new Pst race CYR32, and used molecular and cytogenetic tools to characterize these lines. The introgressions were remarkably resistant to CYR32, suggesting that the resistance to stripe rust of the introgressions thus was controlled by gene(s) located on P. huashanica chromosome 3Ns. All derived lines were cytologically stable in term of meiotic chromosome behavior. Two 3Ns chromosomes of P. huashanica were detected in the disomic addition line PW11-2. Chromosomes 1B of substitution line PW11-5 had been replaced by a pair of P. huashanica 3Ns chromosomes. In PW11-8, a small terminal segment from P. huashanica chromosome arm 3NsS was translocated to the terminal region of wheat chromosomes 3BL. Thus, this translocated chromosome is designated T3BL-3NsS. These conclusions were further confirmed by SSR analyses. Two 3Ns-specific markers Xgwm181 and Xgwm161 will be useful to rapidly identify and trace the translocated fragments. These introgressions, which had significant characteristics of resistance to stripe rust, could be utilized as novel germplasms for wheat breeding. PMID:21760909

  9. Molecular mapping of a non-host resistance gene YrpstY1 in barley (Hordeum vulgare L.) for resistance to wheat stripe rust.

    Science.gov (United States)

    Sui, Xinxia; He, Zhonghu; Lu, Yaming; Wang, Zhenlin; Xia, Xianchun

    2010-10-01

    Cultivated barley (Hordeum vulgare L.) is considered as a non-host or inappropriate host species for wheat stripe rust caused by Puccinia striiformis f. sp. tritici. Most barley cultivars show a broad-spectrum resistance to wheat stripe rust. To determine the genes for resistance to wheat stripe rust in barley, a cross was made between a resistant barley line Y12 and a susceptible line Y16. The two parents, F(1) and 147 BC(1) plants were tested at seedling stage with Chinese prevalent race CYR32 of Puccinia striiformis f. sp. tritici by artificial inoculation in greenhouse. The results indicated that Y12 possessed one dominant resistance gene to wheat stripe rust, designated YrpstY1 provisionally. A total of 388 simple sequence repeat (SSR) markers were used to map the resistance gene in Y12 using bulked segregant analysis. A linkage map, including nine SSR loci on chromosome 7H and YrpstY1, was constructed using the BC(1) population, indicating that the resistance gene YrpstY1 is located on chromosome 7H. It is potential to transfer the resistance gene into common wheat for stripe rust resistance. PMID:21039455

  10. Development of a host-induced RNAi system in the wheat stripe rust fungus Puccinia striiformis f. sp. tritici.

    Science.gov (United States)

    Yin, Chuntao; Jurgenson, James E; Hulbert, Scot H

    2011-05-01

    Rust fungi cause devastating diseases of wheat and other cereal species globally. Genetic resistance is the preferred method to control rusts but the effectiveness of race-specific resistance is typically transient due to the genetic plasticity of rust populations. The advent of RNA interference (RNAi) technology has shown promise for the engineering of resistance to some biotrophic pathogens in plants by altering the expression of essential pathogens' genes. Gene fragments from the rust fungi Puccinia striiformis f. sp. tritici or P. graminis f. sp. tritici were delivered to plant cells through the Barley stripe mosaic virus system, and some reduced the expression of the corresponding genes in the rust fungus. The ability to detect suppression was associated with the expression patterns of the fungal genes because reduction was only detected in transcripts with relatively high levels of expression in fungal haustoria. The results indicate that an in planta RNAi approach can be used in functional genomics research for rust fungi and that it could potentially be used to engineer durable resistance. PMID:21190437

  11. Characterization of non-host resistance in broad bean to the wheat stripe rust pathogen

    Directory of Open Access Journals (Sweden)

    Cheng Yulin

    2012-06-01

    Full Text Available Abstract Background Non-host resistance (NHR confers plant species immunity against the majority of microbial pathogens and represents the most robust and durable form of plant resistance in nature. As one of the main genera of rust fungi with economic and biological importance, Puccinia infects almost all cereals but is unable to cause diseases on legumes. Little is known about the mechanism of this kind of effective defense in legumes to these non-host pathogens. Results In this study, the basis of NHR in broad bean (Vicia faba L. against the wheat stripe rust pathogen, Puccinia striiformis f. sp. tritici (Pst, was characterized. No visible symptoms were observed on broad bean leaves inoculated with Pst. Microscopic observations showed that successful location of stomata and haustoria formation were significantly reduced in Pst infection of broad bean. Attempted infection induced the formation of papillae, cell wall thickening, production of reactive oxygen species, callose deposition and accumulation of phenolic compounds in plant cell walls. The few Pst haustoria that did form in broad bean cells were encased in reactive oxygen and callose materials and those cells elicited cell death. Furthermore, a total of seven defense-related genes were identified and found to be up-regulated during the Pst infection. Conclusions The results indicate that NHR in broad bean against Pst results from a continuum of layered defenses, including basic incompatibility, structural and chemical strengthening of cell wall, posthaustorial hypersensitive response and induction of several defense-related genes, demonstrating the multi-layered feature of NHR. This work also provides useful information for further determination of resistance mechanisms in broad bean to rust fungi, especially the adapted important broad bean rust pathogen, Uromyces viciae-fabae, because of strong similarity and association between NHR of plants to unadapted pathogens and basal

  12. [Microsatellite marker linked with stripe rust resistant gene Yr9 in wheat].

    Science.gov (United States)

    Weng, Dong-Xu; Xu, Shi-Chang; Lin, Rui-Ming; Wan, An-Min; Li, Jing-Peng; Wu, Li-Ren

    2005-09-01

    SSR analysis was performed using a wheat near-isogenic line (NIL) Taichuang29 * 6/ Lovrin13, which carried the resistance gene Yr9 against wheat stripe rust and its recurrent parent Taichung29 as materials. After screening with 32 SSR primers on 1B chromosome, reproducible polymorphic DNA fragment amplified by Xgwm582 was identified. Genetic linkage was tested in 177 segregating F2 plants. The results indicated that microsatellite marker Xgwm582 was linked with gene Yr9 resistant to wheat stripe rust. A genetic distance of 3. 7 cM was calculated. PMID:16201237

  13. Mapping of adult plant stripe rust resistance genes in diploid A genome wheat species and their transfer to bread wheat.

    Science.gov (United States)

    Chhuneja, Parveen; Kaur, Satinder; Garg, Tosh; Ghai, Meenu; Kaur, Simarjit; Prashar, M; Bains, N S; Goel, R K; Keller, Beat; Dhaliwal, H S; Singh, Kuldeep

    2008-02-01

    Stripe rust, caused by Puccinia striiformis West. f.sp. tritici, is one of the most damaging diseases of wheat worldwide. Forty genes for stripe rust resistance have been catalogued so far, but the majority of them are not effective against emerging pathotypes. Triticum monococcum and T. boeoticum have excellent levels of resistance to rusts, but so far, no stripe rust resistance gene has been identified or transferred from these species. A set of 121 RILs generated from a cross involving T. monococcum (acc. pau14087) and T. boeoticum (acc. pau5088) was screened for 3 years against a mixture of pathotypes under field conditions. The parental accessions were susceptible to all the prevalent pathotypes at the seedling stage, but resistant at the adult plant stage. Genetic analysis of the RIL population revealed the presence of two genes for stripe rust resistance, with one gene each being contributed by each of the parental lines. A linkage map with 169 SSR and RFLP loci generated from a set of 93 RILs was used for mapping these resistance genes. Based on phenotypic data for 3 years and the pooled data, two QTLs, one each in T. monococcum acc. pau14087 and T. boeoticum acc. pau5088, were detected for resistance in the RIL population. The QTL in T. monococcum mapped on chromosome 2A in a 3.6 cM interval between Xwmc407 and Xwmc170, whereas the QTL from T. boeoticum mapped on 5A in 8.9 cM interval between Xbarc151 and Xcfd12 and these were designated as QYrtm.pau-2A and QYrtb.pau-5A, respectively. Based on field data for 3 years, their R2 values were 14 and 24%, respectively. T. monococcum acc. pau14087 and three resistant RILs were crossed to hexaploid wheat cvs WL711 and PBW343, using T. durum as a bridging species with the objective of transferring these genes into hexaploid wheat. The B genome of T. durum suppressed resistance in the F1 plants, but with subsequent backcrossing one resistance gene could be transferred from one of the RILs to the hexaploid wheat

  14. Molecular tagging of stripe rust resistance gene YrZH84 in Chinese wheat line Zhou 8425B.

    Science.gov (United States)

    Li, Z F; Zheng, T C; He, Z H; Li, G Q; Xu, S C; Li, X P; Yang, G Y; Singh, R P; Xia, X C

    2006-04-01

    Stripe rust, caused by Puccinia striiformis f. sp. tritici (PST), is one of the most damaging diseases in common wheat (Triticum aestivum L.). With the objective of identifying and tagging new genes for resistance to stripe rust, F1, F2 and F3 populations from the cross Zhou 8425B/Chinese Spring were inoculated with Chinese PST isolate CYR32 in the greenhouse. A total of 790 SSR primers were used to test the parents and resistant and susceptible bulks. The resulting seven polymorphic markers on chromosome 7BL were used for genotyping F2 and F3 populations. Results indicated that Zhou 8425B carries a single dominant resistance gene, temporarily designated YrZH84, closely linked to SSR markers Xcfa2040-7B and Xbarc32-7B with genetic distances of 1.4 and 4.8 cM, respectively. In a seedling test with 25 PST isolates, the reaction patterns of YrZH84 were different from those of lines carrying Yr2 and Yr6. It was concluded that YrZH84 is probably a new stripe rust resistance gene. PMID:16450183

  15. Mapping a stripe rust resistance gene YrC591 in wheat variety C591 with SSR and AFLP markers.

    Science.gov (United States)

    Li, Y; Niu, Y C; Chen, X M

    2009-01-01

    Stripe rust, caused by Puccinia striiformis Westend. f. sp. tritici (PST), is one of the most destructive diseases of common wheat (Triticum aestivum L.). To determine inheritance of stripe rust resistance and map the resistance gene(s) in wheat variety C591, F(1), F(2,) and F(3) progenies derived from the Taichung 29 x C591 cross were inoculated with Chinese PST race CY32 in the greenhouse. Genetic analysis identified a single dominant gene, temporarily designated YrC591. A total of 178 SSR and 130 AFLP markers were used to test the parents and resistant and susceptible bulks. From the bulk segregant analysis, seven polymorphic SSR and two AFLP markers were selected for genotyping the F(2) population. SSR marker Xcfa2040-7B, and SCAR marker SC-P35M48 derived from AFLP marker P35M48 ( 373 ) were identified to be closely linked to the resistance gene with genetic distances of 8.0 and 11.7 cM, respectively. The SSR markers mapped the resistance gene on chromosome arm 7BL. In the seedling test with five PST races, the reaction patterns of C591 were different from wheat cultivars or lines carrying Yr2 or Yr6 that also are found on chromosome 7B. The results indicate that YrC591 is probably a novel stripe rust resistance gene. PMID:18946654

  16. Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors

    Science.gov (United States)

    Background Wheat yellow (stripe) rust caused by Puccinia striiformis f. sp. tritici (PST) is one of the most devastating diseases of wheat worldwide. To design effective breeding strategies that maximize the potential for durable disease resistance it is important to understand the molecular basis o...

  17. Genetic architecture of resistance to stripe rust in a global winter wheat germplasm collection

    Science.gov (United States)

    Virulence shifts in populations of Puccinia striiformis f. sp. tritici (Pst), the causal pathogen of wheat stripe rust, are a major challenge to resistance breeding. The majority of known resistance genes are already ineffective against current races of Pst, necessitating the identification and intr...

  18. Yr32 for resistance to stripe (yellow) rust present in the wheat cultivar Carstens V

    DEFF Research Database (Denmark)

    Eriksen, L.; Afshari, F.; Christiansen, M.J.; McIntosh, R.A.; Jahoor, A.; Wellings, C.R.

    2004-01-01

    Carstens V. For this latter purpose, stripe rust response data from both seedling and field tests on a doubled haploid population consisting of 77 lines were compared to an available molecular map for the same lines using a non-parametric quantitative trait loci (QTL) analysis. Results obtained in Denmark...

  19. Genetic Architecture of Resistance to Stripe Rust in a Global Winter Wheat Germplasm Collection.

    Science.gov (United States)

    Bulli, Peter; Zhang, Junli; Chao, Shiaoman; Chen, Xianming; Pumphrey, Michael

    2016-01-01

    Virulence shifts in populations of Puccinia striiformis f. sp. tritici (Pst), the causal pathogen of wheat stripe rust, are a major challenge to resistance breeding. The majority of known resistance genes are already ineffective against current races of Pst, necessitating the identification and introgression of new sources of resistance. Germplasm core collections that reflect the range of genetic and phenotypic diversity of crop species are ideal platforms for examining the genetic architecture of complex traits such as resistance to stripe rust. We report the results of genetic characterization and genome-wide association analysis (GWAS) for resistance to stripe rust in a core subset of 1175 accessions in the National Small Grains Collection (NSGC) winter wheat germplasm collection, based on genotyping with the wheat 9K single nucleotide polymorphism (SNP) iSelect assay and phenotyping of seedling and adult plants under natural disease epidemics in four environments. High correlations among the field data translated into high heritability values within and across locations. Population structure was evident when accessions were grouped by stripe rust reaction. GWAS identified 127 resistance loci that were effective across at least two environments, including 20 with significant genome-wide adjusted P-values. Based on relative map positions of previously reported genes and QTL, five of the QTL with significant genome-wide adjusted P-values in this study represent potentially new loci. This study provides an overview of the diversity of Pst resistance in the NSGC winter wheat germplasm core collection, which can be exploited for diversification of stripe rust resistance in breeding programs. PMID:27226168

  20. Stripe rust resistance genes in the UK winter wheat cultivar Claire.

    Science.gov (United States)

    Powell, N M; Lewis, C M; Berry, S T; Maccormack, R; Boyd, L A

    2013-06-01

    Stripe rust resistance in the winter wheat cultivar Claire had remained effective in the UK and Europe since its release in 1999 and consequently has been used extensively in wheat breeding programs. However, in 2012, reports indicated that this valuable resistance may now have been compromised. To characterise stripe rust resistance in Claire and determine which genes may still confer effective resistance a cross was made between Claire and the stripe rust susceptible cultivar Lemhi. A genetic linkage map, constructed using SSR, AFLP, DArT and NBS-AFLP markers had a total map length of 1,730 cM. To improve the definition of two quantitative trait loci (QTL) identified on the long arm of chromosome 2D further markers were developed from wheat EST. Stripe rust resistance was evaluated on adult plants under field and glasshouse conditions by measuring the extent of fungal growth and sporulation, percentage infection (Pi) and the necrotic/chlorotic responses of the plant to infection, infection type (IT). Four QTL contributing to stripe rust adult plant resistance (APR) were identified in Claire, QYr.niab-2D.1, QYr.niab-2D.2, QYr.niab-2B and QYr.niab-7B. For Pi QYr.niab-2D.1 explained up to 25.4 % of the phenotypic variation, QYr.niab-2D.2 up to 28.7 %, QYr.niab-2B up to 21.7 % and QYr.niab-7B up to 13.0 %. For IT the percentages of phenotypic variation explained were 23.4, 31.8, 17.2 and 12.6 %, respectively. In addition to the four QTL conferring APR in Claire, a race-specific, seedling expressed resistance gene was identified on chromosome 3B. PMID:23536048

  1. Characterisation of a new stripe rust resistance gene Yr47 and its genetic association with the leaf rust resistance gene Lr52.

    Science.gov (United States)

    Bansal, U K; Forrest, K L; Hayden, M J; Miah, H; Singh, D; Bariana, H S

    2011-05-01

    Two Iranian common wheat landraces AUS28183 and AUS28187 from the Watkins collection showed high levels of seedling resistance against Australian pathotypes of leaf rust and stripe rust pathogens. Chi-squared analyses of rust response segregation among F(3) populations derived from crosses of AUS28183 and AUS28187 with a susceptible genotype AUS27229 revealed monogenic inheritance of leaf rust and stripe rust resistance. As both genotypes produced similar leaf rust and stripe rust infection types, they were assumed to carry the same genes. The genes were temporarily named as LrW1 and YrW1. Molecular mapping placed LrW1 and YrW1 in the short arm of chromosome 5B, about 10 and 15 cM proximal to the SSR marker gwm234, respectively, and the marker cfb309 mapped 8-12 cM proximal to YrW1. LrW1 mapped 3-6 cM distal to YrW1 in two F(3) populations. AUS28183 corresponded to the accession V336 of the Watkins collection which was the original source of Lr52. Based on the genomic location and accession records, LrW1 was concluded to be Lr52. Because no other seedling stripe rust resistance gene has previously been mapped in chromosome 5BS, YrW1 was permanently named as Yr47. A combination of flanking markers gwm234 and cfb309 with phenotypic assays could be used to ascertain the presence of Lr52 and Yr47 in segregating populations. This investigation characterised a valuable source of dual leaf rust and stripe rust resistance for deployment in new wheat cultivars. Transfer of Lr52 and Yr47 into current Australian wheat backgrounds is in progress. PMID:21344185

  2. [A microsatellite marker linked to the stripe rust resistance gene YrV23 in the wheat variety Vilmorin23].

    Science.gov (United States)

    Wang, Yue-Bing; Xu, Shi-Chang; Xu, Zhong; Liu, Tai-Guo; Lin, Rui-Ming

    2006-03-01

    Vilmorin23 is an internationally used differential host variety for studies on the interactions between wheat stripe rust and wheat. It contains the stripe rust resistance gene YrV23 and is potentially an important source of stripe rust resistance worldwide. SSR analysis was performed on the wheat NIL Taichuang 29*6/YrV23 carrying the resistant gene YrV23 against stripe rust, Vilmorin 23 and its recurrent parent Taichung 29. Fifty pairs of SSR primers on wheat chromosome 2B were screened and a reproducible polymorphic DNA fragment amplified by Xwmc356 was found. Genetic linkage was tested on 150 segregating F2 plants. It showed that the microsatellite marker Xwmc356 was linked to the resistance gene YrV23 with a genetic distance of 9.4 cM. PMID:16551597

  3. Prediction of yield losses in wheat (triticum aestivum l.) caused by yellow rust in relation to epidemiological factors in Faisalabad

    International Nuclear Information System (INIS)

    Thirty six genotypes were screened against yellow rust to check their level of susceptibility or resistance. Among 36 genotypes screened against yellow rust, 18 were susceptible, 6 were moderately susceptible to susceptible, 7 were moderately resistant to moderately susceptible and 5 genotypes remained resistant. Yield losses were predicted in wheat on the basis of varying level of yellow rust severities. It was observed that susceptible genotypes showed higher yield losses as compared to resistant genotypes. Maximum severity of 90% of yellow rust resulted in 54% to 55% calculated and predicted losses, respectively. While 40, 50, 60 and 70% disease severity of yellow rust caused 35-34%, 38-37%, 42-40% and 46-47% calculated and predicted losses, respectively. However, the decline in losses was observed as the genotypes changed their reaction from susceptible to moderate susceptible. Similarly, losses were diminished as the varieties/lines showed moderate resistant reaction from moderate susceptible. Minimum temperature and relative humidity remained positively correlated while the maximum temperature showed negative correlation with stripe rust severity. With the increase of minimum temperature and relative humidity a rise up in stripe rust infection was seen while as the maximum temperature increased stripe rust infection decreased on different genotypes. It may be concluded from the study that environmental factors played major role in the spread of the disease which result in yield losses. (author)

  4. Genetic Analysis and Molecular Mapping of a Stripe Rust Resistance Gene YrH9014 in Wheat Line H9014-14-4-6-1

    Institute of Scientific and Technical Information of China (English)

    MA Dong-fang; HOU Lu; TANG Ming-shuang; WANG Hai-ge; LI Qiang; JING Jin-xue

    2013-01-01

    Stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is one of the most widespread and destructive wheat diseases in many wheat-growing regions of the world. The winter wheat translocation line H9014-14-4-6-1 has all stage resistance. To identify stripe rust resistance genes, the segregating populations were developed from the cross between H9014-14-4-6-1 and Mingxian 169 (a wheat cultivar susceptible to all Pst races identified in China). The seedlings of the parents and F1 plants, F2, F3 and BC1 generations were tested with Pst races under controlled greenhouse conditions. Two genes for resistance to stripe rust were identified, one dominant gene conferred resistance to SUN11-4, temporarily designated YrH9014 and the other recessive gene conferred resistance to CYR33. The bulked segregant analysis and simple sequence repeat (SSR) markers were used to identify polymorphic markers associated with YrH9014. Seven polymorphic SSR markers were used to genotype the F2 population inoculated with SUN11-4. A linkage map was constructed according to the genotypes of seven SSR markers and resistance gene. The molecular map spanned 24.3 cM, and the genetic distance of the two closest markers Xbarc13 and Xbarc55 to gene locus was 1.4 and 3.6 cM, respectively. Based on the position of SSR marker, the resistance gene YrH9014 was located on chromosome arm 2BS. Amplification of a set of nulli-tetrasomic Chinese Spring lines with SSR marker Xbarc13 indicated that YrH9014 was located on chromosome 2B. Based on chromosomal location, the reaction patterns and pedigree analysis, YrH9014 should be a novel resistance gene to stripe rust. This new gene and flanking markers got from this study should be useful for marker-assisted selection (MAS) in breeding programs for stripe rust.

  5. Identification and Severity Determination of Wheat Stripe Rust and Wheat Leaf Rust Based on Hyperspectral Data Acquired Using a Black-Paper-Based Measuring Method

    Science.gov (United States)

    Ruan, Liu; Wang, Rui; Liu, Qi; Ma, Zhanhong; Li, Xiaolong; Cheng, Pei; Wang, Haiguang

    2016-01-01

    It is important to implement detection and assessment of plant diseases based on remotely sensed data for disease monitoring and control. Hyperspectral data of healthy leaves, leaves in incubation period and leaves in diseased period of wheat stripe rust and wheat leaf rust were collected under in-field conditions using a black-paper-based measuring method developed in this study. After data preprocessing, the models to identify the diseases were built using distinguished partial least squares (DPLS) and support vector machine (SVM), and the disease severity inversion models of stripe rust and the disease severity inversion models of leaf rust were built using quantitative partial least squares (QPLS) and support vector regression (SVR). All the models were validated by using leave-one-out cross validation and external validation. The diseases could be discriminated using both distinguished partial least squares and support vector machine with the accuracies of more than 99%. For each wheat rust, disease severity levels were accurately retrieved using both the optimal QPLS models and the optimal SVR models with the coefficients of determination (R2) of more than 0.90 and the root mean square errors (RMSE) of less than 0.15. The results demonstrated that identification and severity evaluation of stripe rust and leaf rust at the leaf level could be implemented based on the hyperspectral data acquired using the developed method. A scientific basis was provided for implementing disease monitoring by using aerial and space remote sensing technologies. PMID:27128464

  6. Genetics and molecular mapping of genes for high-temperature resistance to stripe rust in wheat cultivar Xiaoyan 54.

    Science.gov (United States)

    Zhou, X L; Wang, W L; Wang, L L; Hou, D Y; Jing, J X; Wang, Y; Xu, Z Q; Yao, Q; Yin, J L; Ma, D F

    2011-08-01

    Stripe rust, caused by Puccinia striiformis f. sp. tritici, is one of the most widespread and destructive wheat diseases worldwide. Growing resistant cultivars is the preferred means of control of the disease. The winter wheat cultivar Xiaoyan 54 has high-temperature resistance to stripe rust. To identify genes for stripe rust resistance, Xiaoyan 54 was crossed with Mingxian 169, a winter wheat genotype susceptible to all Chinese races of the pathogen. Seedlings and adult plants of the parents and F(1), F(2), F(3) and F(4) progeny were tested with Chinese race CYR32 under controlled greenhouse conditions and in the field. Xiaoyan 54 has two recessive resistance genes, designated as Yrxy1 and Yrxy2, conferring high-temperature resistance. Simple sequence repeat (SSR) primers were used to identify molecular markers flanking Yrxy2 using 181 plants from one segregating F(3) line. A total of nine markers, two of which flanked the locus at genetic distances of 4.0 and 6.4 cM on the long arm of chromosome 2A were identified. Resistance gene analog polymorphism (RGAP) and SSR techniques were used to identify molecular markers linked to Yrxy1. A linkage group of nine RGAP and two SSR markers was constructed for Yrxy1 using 177 plants of another segregating F(3) line. Two RGAP markers were closely linked to the locus with genetic distances of 2.3 and 3.5 cM. Amplification of a set of nulli-tetrasomic Chinese Spring lines with RGAP markers M8 and M9 and the two SSR markers located Yrxy1 on the short arm of chromosome 7A. The SSR markers Xbarc49 and Xwmc422 were 15.8 and 26.1 cM, respectively, from the gene. The closely linked molecular markers should be useful for incorporating the resistance genes into commercial cultivars and combining them with other genes for stripe rust resistance. PMID:21516354

  7. Brachypodium distachyon T-DNA insertion lines: a model pathosystem to study nonhost resistance to wheat stripe rust.

    Science.gov (United States)

    An, Tianyue; Cai, Yanli; Zhao, Suzhen; Zhou, Jianghong; Song, Bo; Bux, Hadi; Qi, Xiaoquan

    2016-01-01

    Wheat stripe rust, caused by Puccinia striiformis f. sp. tritici (PST), is one of the most destructive diseases and can cause severe yield losses in many regions of the world. Because of the large size and complexity of wheat genome, it is difficult to study the molecular mechanism of interaction between wheat and PST. Brachypodium distachyon has become a model system for temperate grasses' functional genomics research. The phenotypic evaluation showed that the response of Brachypodium distachyon to PST was nonhost resistance (NHR), which allowed us to present this plant-pathogen system as a model to explore the immune response and the molecular mechanism underlying wheat and PST. Here we reported the generation of about 7,000 T-DNA insertion lines based on a highly efficient Agrobacterium-mediated transformation system. Hundreds of mutants either more susceptible or more resistant to PST than that of the wild type Bd21 were obtained. The three putative target genes, Bradi5g17540, BdMYB102 and Bradi5g11590, of three T-DNA insertion mutants could be involved in NHR of Brachypodium distachyon to wheat stripe rust. The systemic pathologic study of this T-DNA mutants would broaden our knowledge of NHR, and assist in breeding wheat cultivars with durable resistance. PMID:27138687

  8. Brachypodium distachyon T-DNA insertion lines: a model pathosystem to study nonhost resistance to wheat stripe rust

    Science.gov (United States)

    An, Tianyue; Cai, Yanli; Zhao, Suzhen; Zhou, Jianghong; Song, Bo; Bux, Hadi; Qi, Xiaoquan

    2016-01-01

    Wheat stripe rust, caused by Puccinia striiformis f. sp. tritici (PST), is one of the most destructive diseases and can cause severe yield losses in many regions of the world. Because of the large size and complexity of wheat genome, it is difficult to study the molecular mechanism of interaction between wheat and PST. Brachypodium distachyon has become a model system for temperate grasses’ functional genomics research. The phenotypic evaluation showed that the response of Brachypodium distachyon to PST was nonhost resistance (NHR), which allowed us to present this plant-pathogen system as a model to explore the immune response and the molecular mechanism underlying wheat and PST. Here we reported the generation of about 7,000 T-DNA insertion lines based on a highly efficient Agrobacterium-mediated transformation system. Hundreds of mutants either more susceptible or more resistant to PST than that of the wild type Bd21 were obtained. The three putative target genes, Bradi5g17540, BdMYB102 and Bradi5g11590, of three T-DNA insertion mutants could be involved in NHR of Brachypodium distachyon to wheat stripe rust. The systemic pathologic study of this T-DNA mutants would broaden our knowledge of NHR, and assist in breeding wheat cultivars with durable resistance. PMID:27138687

  9. Appraisal of wheat germplasm for adult plant resistance against stripe rust

    Directory of Open Access Journals (Sweden)

    Saleem Kamran

    2015-12-01

    Full Text Available The resurgence of wheat stripe rust is of great concern for world food security. Owing to resistance breakdown and the appearance of new virulent high-temperature adapted races of Puccinia striiformis f. sp. tritici (Pst, many high yielding commercial varieties in the country lost their yield potential. Searching for new sources of resistance is the best approach to mitigate the problem. Quantitative resistance (partial or adult plant or durable resistance is reported to be more stable than race specific resistance. In the current perusal, a repertoire of 57 promising wheat lines along with the KLcheck line Morocco, developed through hybridisation and selection of local and international lines with International Maize and Wheat Improvement Center (CIMMYT origin, were evaluated under natural field conditions at Nuclear Institute for Agriculture and Biology (NIAB during the 2012−2013 and 2013−2014 time periods. Final rust severity (FRS, the area under the rust progress curve (AURPC, the relative area under the rust progress curve (rAURPC, and the coefficient of infection (CI were unraveled to infer the level of quantitative resistance. Final rust severity was recorded when the susceptible check exhibited 100% severity. There were 21 lines which were immune (no disease, 16 which were resistant, five moderately resistant, two resistant-to-moderately resistant, one moderately resistant-to-moderately susceptible, 5 moderately susceptible-to-susceptible, one moderately susceptible, and six exhibited a susceptible response. Nevertheless, 51 lines exhibited a high level of partial resistance while the three lines, NW-5-1212-1, NW-7-30-1, and NW-7-5 all showed a moderate level of partial resistance based on FRS, while 54 lines, on the basis of AURPC and rAURPC, were identified as conferring a high level of partial resistance. Moreover, adult plant resistance was conferred by 47 wheat lines, based on CI value. It was striking that, 13 immune lines

  10. Generation and analysis of expression sequence tags from haustoria of the wheat stripe rust fungus Puccinia striiformis f. sp. Tritici

    Directory of Open Access Journals (Sweden)

    Han Qingmei

    2009-12-01

    Full Text Available Abstract Background Stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst, is one of the most destructive diseases of wheat (Triticum aestivum L. worldwide. In spite of its agricultural importance, the genomics and genetics of the pathogen are poorly characterized. Pst transcripts from urediniospores and germinated urediniospores have been examined previously, but little is known about genes expressed during host infection. Some genes involved in virulence in other rust fungi have been found to be specifically expressed in haustoria. Therefore, the objective of this study was to generate a cDNA library to characterize genes expressed in haustoria of Pst. Results A total of 5,126 EST sequences of high quality were generated from haustoria of Pst, from which 287 contigs and 847 singletons were derived. Approximately 10% and 26% of the 1,134 unique sequences were homologous to proteins with known functions and hypothetical proteins, respectively. The remaining 64% of the unique sequences had no significant similarities in GenBank. Fifteen genes were predicted to be proteins secreted from Pst haustoria. Analysis of ten genes, including six secreted protein genes, using quantitative RT-PCR revealed changes in transcript levels in different developmental and infection stages of the pathogen. Conclusions The haustorial cDNA library was useful in identifying genes of the stripe rust fungus expressed during the infection process. From the library, we identified 15 genes encoding putative secreted proteins and six genes induced during the infection process. These genes are candidates for further studies to determine their functions in wheat-Pst interactions.

  11. Inheritance and Molecular Mapping of Stripe Rust Resistance Gene Yr88375 in Chinese Wheat Line Zhongliang 88375

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Stripe rust is one of the most important diseases of wheat worldwide. Inheritance of stripe rust resistance and mapping of resistance gene with simple sequence repeat (SSR) markers are studied to formulate efficient strategies for breeding cultivars resistant to stripe rust. Zhongliang 88375, a common wheat line, is highly resistant to all three rusts of wheat in China. The gene conferring rust disease was deduced originating from Elytrigia intermedium. Genetic analysis of Zhongliang 88375 indicated that the resistance to PST race CYR31 was controlled by a single dominant gene, temporarily designated as Yr88375. To molecular map Yr88375, a F2 segregating population consisting of 163 individuals was constructed on the basis of the hybridization between Zhongliang 88375 and a susceptible wheat line Mingxian 169; 320 SSR primer pairs were used for analyzing the genetic linkage relation. Six SSR markers, Xgwm335, Xwmc289, Xwmc810, Xgdm116, Xbarc59, and Xwmc783, are linked to Yr88375 as they were all located on chromosome 5BL. Yr88375 was also located on that chromosome arm, closely linked to Xgdmll6 and Xwmc810 with genetic distances of 3.1 and 3.9 cM, respectively. The furthest marker Xwmc783 was 13.5 cM to Yr88375. Hence, pedigree analysis of Zhongliang 88375 combined with SSR markers supports the conclusion that the highly resistance gene Yr88375 derived from Elytrigia intermedium is a novel gene for resistance to stripe rust in wheat. It could play an important role in wheat breeding programs for stripe rust resistance.

  12. 黄淮麦区小麦资源中高温抗条锈性品种的筛选%Screening of Wheat Cultivars for High Temperature Resistance to Stripe Rust from Wheat Resources in Huanghuai Growth Area

    Institute of Scientific and Technical Information of China (English)

    杨炜迪; 陈宏灏; 王美南

    2008-01-01

    [Objective] The study aimed to screen wheat cultivars with high temperature resistance to stripe rust from the wheat resources in Huanghuai growth area. [Method] Seedlings of 165 wheat cultivars from Huanghuai growth area were identified by wheat stripe rust under high temperature; then the wheat cultivars showing stripe rust at seedling stage were further used to identify the same resistance in field. [Results] 13 cultivars were proved to be stripe rust resistant under high temperature, and the expression stages of stripe rust in the 13 cultivars were revealed. The field identification results confirmed the identification results at seedling stage via inoculation of mixed stripe rust of physiological races. The stripe resistances of wheat cultivars were also proved to be non-race-specific. [Conclusion] Wheat resources in Huanghuai growth area are abundant in wheat cultivars with high temperature resistance to stripe rust.

  13. Inheritance and Molecular Mapping of an All-Stage Stripe Rust Resistance Gene Derived from the Chinese Common Wheat Landrace "Yilongtuomai".

    Science.gov (United States)

    Wu, Xue-Lian; Wang, Jian-Wei; Cheng, Yu-Kun; Ye, Xue-Ling; Li, Wei; Pu, Zhi-En; Jiang, Qian-Tao; Wei, Yu-Ming; Deng, Mei; Zheng, You-Liang; Chen, Guo-Yue

    2016-09-01

    Yellow or stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is a devastating foliar disease that affects common wheat (Triticum aestivum L.) around the world. In China, common wheat landraces are potential sources of disease and abiotic stress resistance genes for wheat improvement. Yilongtuomai (YL), a wheat landrace from Yilong County, Sichuan Province, shows high levels of resistance against most Chinese Pst races. In this study, the resistance of YL to stripe rust disease was examined in detail. Parent strains, YL and Taichung 29, a variety susceptible to Pst race CYR32, and their F1, F2, and F2:3 offspring, were inoculated with CYR32 during the seedling stage in the field or adult-plant stage in the greenhouse. Results indicated that resistance to CYR32 in YL is conferred by a single dominant gene, designated YrYL The segregating F2 population (352 plants), was analyzed in terms of its resistance locus using simple sequence repeats (SSRs), resistance gene analog polymorphisms (RGAPs), and sequence-related amplified polymorphism (SRAP). A linkage group of 6 SSRs, 2 RGAPs, and 1 SRAP was constructed for the YrYL gene. Using the identified SSRs associated with physical mapping of RGAP using Chinese Spring nullisomic-tetrasomic stocks, the YrYL gene was localized to the short arm of chromosome 7D. The gene was flanked by 1 SSR marker, Xbarc92, and 1 RGAP marker, CLRRfor/Ptokin4, at genetic distances of 5.35 and 9.86 cM, respectively. The YrYL gene was compared to other stripe rust resistance genes reported on chromosome 7D by evaluating its reaction patterns to CYR32 and its pedigree relationship. Our results suggest that the YrYL gene is a new stripe rust resistance gene. PMID:27208148

  14. Yr45, a new wheat gene for stripe rust resistance on the long arm of chromosome 3D.

    Science.gov (United States)

    Li, Q; Chen, X M; Wang, M N; Jing, J X

    2011-01-01

    Stripe rust, caused by Puccinia striiformis f. sp. tritici, is one of the most destructive diseases of wheat worldwide. Growing resistant cultivars is the most effective approach to control the disease, but only a few genes confer effective all-stage resistance against the current populations of the pathogen worldwide. It is urgent to identify new genes for diversifying sources of resistance genes and for pyramiding genes for different types of resistance in order to achieve high levels of durable resistance for sustainable control of stripe rust. The common spring wheat genotype 'PI 181434', originally from Afghanistan, was resistant in all greenhouse and field tests in our previous studies. To identify the resistance gene(s) PI 181434 was crossed with susceptible genotype 'Avocet Susceptible'. Adult plants of 103 F(2) progeny were tested in the field under the natural infection of P. striiformis f. sp. tritici. Seedlings of the parents, F(2) and F(3) were tested with races PST-100 and PST-127 of the pathogen under controlled greenhouse conditions. The genetic study showed that PI 181434 has a single dominant gene conferring all-stage resistance. Resistance gene analog polymorphism (RGAP) and simple sequence repeat (SSR) techniques were used to identify molecular markers linked to the gene. A linkage map of 8 RGAP and 2 SSR markers was constructed for the gene using data from the 103 F(2) plants and their derived F(3) lines tested in the greenhouse. Amplification of the complete set of nulli-tetrasomic lines and selected ditelosomic lines of Chinese Spring with an RGAP marker and the two SSR markers mapped the gene on the long arm of chromosome 3D. Because it is the first gene for stripe rust resistance mapped on chromosome 3DL and different from all previously named Yr genes, the gene in PI 181434 was designated Yr45. Polymorphism rates of the two closest flanking markers, Xwgp115 and Xwgp118, in 45 wheat genotypes were 73.3 and 82.2%, respectively. Single

  15. Molecular mapping of a stripe rust resistance gene in wheat line C51

    Indian Academy of Sciences (India)

    Jianmin Zheng; Zehong Yan; Li Zhao; Shizhao Li; Zengyan Zhang; Resewarne Garry; Wuyun Yang; Zongjun Pu

    2014-08-01

    Stripe rust, a major disease in areas where cool temperatures prevail, can strongly influence grain yield. To control this disease, breeders have incorporated seedling resistance genes from a variety of sources outside the primary wheat gene pool. The wheat line C51, introduced from the International Center for Agricultural Research in the Dry Areas (ICARDA), Syria, confers resistance to all races of Puccinia striiformis f. sp. tritici (PST) in China. To map the resistant gene(s) against stripe rust in wheat line C51, 212 F8 recombinant inbred lines (RILs) derived from the cross X440 × C51 were inoculated with Chinese PST race CYR33 (Chinese yellow rust, CYR) in the greenhouse. The result showed that C51 carried a single dominant gene for resistance (designated YrC51) to CYR33. Simple sequence repeat (SSR) and resistance gene-analogue polymorphism (RGAP) markers that were polymorphic between the parents were used for genotyping the 212 F8 RILs. YrC51 was closely linked to two SSR loci on chromosome 2BS with genetic distances of 5.1 cM (Xgwm429) and 7.2 cM (Xwmc770), and to three RGAP markers C51R1 (XLRR For / NLRR For), C51R2 (CLRR Rev / Cre3LR-F) and C51R3 (Pto kin4/ NLRRINV2) with genetic distances of 5.6, 1.6 and 9.2 cM, respectively. These RGAP-linked markers were then converted into STS markers.Among them, one STS marker, C51STS-4, was located at a genetic distance of 1.4 cM to YrC51 and was closely associated with resistance when validated in several populations derived from crosses between C51 and Sichuan cultivars. The results indicated that C51STS-4 can be used for marker assisted selection (MAS) and would facilitate the pyramiding of YrC51 with other genes for stripe rust resistance.

  16. Molecular mapping of a stripe rust resistance gene in wheat line C51.

    Science.gov (United States)

    Zheng, Jianmin; Yan, Zehong; Zhao, Li; Li, Shizhao; Zhang, Zengyan; Garry, Rosewarne; Yang, Wuyun; Pu, Zongjun

    2014-08-01

    Stripe rust, a major disease in areas where cool temperatures prevail, can strongly influence grain yield. To control this disease, breeders have incorporated seedling resistance genes from a variety of sources outside the primary wheat gene pool. The wheat line C51, introduced from the International Center for Agricultural Research in the Dry Areas (ICARDA), Syria, confers resistance to all races of Puccinia striiformis f. sp. tritici (PST) in China. To map the resistant gene(s) against stripe rust in wheat line C51, 212 F8 recombinant inbred lines (RILs) derived from the cross X440 x C51 were inoculated with Chinese PST race CYR33 (Chinese yellow rust, CYR) in the greenhouse. The result showed that C51 carried a single dominant gene for resistance (designated YrC51) to CYR33. Simple sequence repeat (SSR) and resistance gene-analogue polymorphism (RGAP) markers that were polymorphic between the parents were used for genotyping the 212 F8 RILs. YrC51 was closely linked to two SSR loci on chromosome 2BS with genetic distances of 5.1 cM (Xgwm429) and 7.2 cM (Xwmc770), and to three RGAP markers C51R1 (XLRR For / NLRR For), C51R2 (CLRR Rev / Cre3LR-F) and C51R3 (Pto kin4 / NLRRINV2) with genetic distances of 5.6, 1.6 and 9.2 cM, respectively. These RGAP-linked markers were then converted into STS markers.Among them, one STS marker, C51STS-4, was located at a genetic distance of 1.4 cM to YrC51 and was closely associated with resistance when validated in several populations derived from crosses between C51 and Sichuan cultivars. The results indicated that C51STS-4 can be used for marker assisted selection (MAS) and would facilitate the pyramiding of YrC51 with other genes for stripe rust resistance. PMID:25189239

  17. Molecular cytogenetic characterization of a new wheat Secale africanum 2Ra(2D) substitution line for resistance to stripe rust

    Indian Academy of Sciences (India)

    Mengping Lei; Guangrong Li; Sufen Zhang; Cheng Liu; Zujun Yang

    2011-08-01

    A stable, highly fertile wheat Secale africanum substitution line LF24, derived from the F7 generation of a cross between Mianyang11 (MY11) and Triticum durum, S. africanum amphiploid (YF) was identified through molecular cytogenetic analysis. Application of C-banding, in situ hybridization and molecular markers analysis showed that LF24 was a wheat S. africanum 2Ra(2D) substitution line. When inoculated with stripe rust isolates, T. durum and MY11 were highly susceptible, while S. africanum, YF and LF24 were immune. It is confirmed through molecular cytogenetic analysis that the stripe rust resistance of LF24 was derived from S. africanum chromosome 2Ra. We compared the banding patterns and disease resistance of reported chromosomes 2R from different S. cereale introduced into wheat background, and found that there was new stripe rust resistance gene(s) on S. africanum 2Ra. LF24 is a new substitution line which can be used as stripe rust resistant source in wheat improvement.

  18. IDENTIFYING QTL FOR HIGH-TEMPERATURE ADULT-PLANT RESISTANCE TO STRIPE RUST IN WHEAT (TRITICUM AESTIVUM L.)

    Science.gov (United States)

    High-temperature, adult-plant (HTAP) resistance to stripe rust in wheat is governed by multiple genes, which are race non-specific and durable. The winter wheat cultivar ‘Stephens’ has served as the primary source of HTAP resistance in the Pacific Northwest region of the U.S. for the last 28 years. ...

  19. [Genetic analysis and SSR mapping on an new stem stripe rust resistance gene YrY206 in Aegilops tauschii].

    Science.gov (United States)

    Zhang, Haiquan; Lang, Jie; Ma, Shuqin; Zhang, Baoshi

    2008-08-01

    A wheat stripe rust resistance gene was screened out from Aegilops tauschii which is relative genera of wheat species, broadening the genetic basis of the anti-disease character of wheat species. By hybridizing diversed Ae. Tauschii species, which is either resistant or susceptible to wheat stripe rust, a dominant wheat stripe rust resistance gene was detected from Ae. Tauschii (Coss.) Schmal Y206. The novel gene was temporarily designated as YrY206. By bulk segregation analysis, four microsatellite markers Wmc11a, Xgwm71c, Xgwm161 and Xgwm183 were found to be linked to YrY206 with genetic distances of 4.0, 3.3, 1.5 and 9.3 cM, respectively. According to the locations of the linked markers, the resistance gene was located on chromosome 3DS. Based on the chromosomal location and the resistance pattern of the gene, YrY206 should be a novel stripe rust resistance gene. PMID:18998554

  20. Characterization and molecular mapping of Yr52 for high-temperature adult-plant resistance to stripe rust in spring wheat germplasm PI 183527.

    Science.gov (United States)

    Ren, R S; Wang, M N; Chen, X M; Zhang, Z J

    2012-09-01

    Stripe rust, caused by Puccinia striiformis f. sp. tritici, is one of the most destructive diseases of wheat worldwide. Resistance is the best approach to control the disease. High-temperature adult-plant (HTAP) stripe rust resistance has proven to be race non-specific and durable. However, genes conferring high-levels of HTAP resistance are limited in number and new genes are urgently needed for breeding programs to develop cultivars with durable high-level resistance to stripe rust. Spring wheat germplasm PI 183527 showed a high-level of HTAP resistance against stripe rust in our germplasm evaluations over several years. To elucidate the genetic basis of resistance, we crossed PI 183527 and susceptible wheat line Avocet S. Adult plants of parents, F(1), F(2) and F(2:3) progeny were tested with selected races under the controlled greenhouse conditions and in fields under natural infection. PI 183527 has a single dominant gene conferring HTAP resistance. Resistance gene analog polymorphism (RGAP) and simple sequence repeat (SSR) markers in combination with bulked segregant analysis (BSA) were used to identify markers linked to the resistance gene. A linkage map consisting of 4 RGAP and 7 SSR markers was constructed for the resistance gene using data from 175 F(2) plants and their derived F(2:3) lines. Amplification of nulli-tetrasomic, ditelosomic and deletion lines of Chinese Spring with three RGAP markers mapped the gene to the distal region (0.86-1.0) of chromosome 7BL. The molecular map spanned a genetic distance of 27.3 cM, and the resistance gene was narrowed to a 2.3-cM interval flanked by markers Xbarc182 and Xwgp5258. The polymorphism rates of the flanking markers in 74 wheat lines were 74 and 30 %, respectively; and the two markers in combination could distinguish the alleles at the resistance locus in 82 % of tested genotypes. To determine the genetic relationship between this resistance gene and Yr39, a gene also on 7BL conferring HTAP resistance in

  1. Molecular implications from ssr markers for stripe rust (puccinia striiformis F.Sp. tritici) resistance gene in bread wheat line N95175

    International Nuclear Information System (INIS)

    Stripe rust caused by Puccinia striiformis f. sp. tritici is one of the most devastating diseases of wheat in China as well as in Pakistan. In the present studies F2 population was established by crossing N95175 resistant to stripe rust race CYR32 with two susceptible lines Huixianhong and Abbondanza to molecularly tag resistance gene existing in wheat line N95175. The segregation of phenotype was accorded with an expected 3:1 ratio in both combinations studied and fit the model of a single dominant gene controlling stripe rust resistance in N95175. Thirty five SSR primer pairs were screened on the parents and bulks and also on individuals since resistance gene to be located in chromosome 1B. The result indicated that most of resistant plants amplified same band as resistant parent while susceptible plants amplified same as susceptible parents studied and considered that markers co-segregated with resistant loci in N95175. This yellow rust resistance gene was considered to be Yr26 originally thought to be also located in chromosome arm 1BS linked to marker loci Xgwm273 and Xgwm11 with genetic distances ranging from 1.075cM to 2.74cM in both combinations studied. However, the closest loci were observed 2.67cM for Xgwm273 and 1.075cM for Xgwm11 in Huixianhong XN95175 and Abbondanza XN95175 crosses respectively. Hence, it has been concluded that the PCR-based micro satellite markers Xgwm273 and Xgwm11 located in chromosome 1B were shown to be very effective for the detection of Yr26 gene in segregating population and can be applied in future wheat breeding strategies. (author)

  2. Genetic analysis and location of gene for resistance to stripe rust in wheat international differential host Strubes Dickkopf

    Indian Academy of Sciences (India)

    Feng Jing; Xu Jiao-Jiao; Lin Rin-Ming; He Yue-Qiu; Xu Shi-Chang

    2013-08-01

    Strubes Dickkopf is the sixth differential in the world set for wheat stripe (yellow) rust. It is very important to clarify its genetic character of resistance to stripe rust and to develop the molecular markers linked to resistance genes. The NIL Taichung 29*6/Strubes Dickkopf, which was obtained by Strubes Dickkopf as the gene donor and Taichung 29 as the genetic background through backcross breeding, was crossed with the recurrent parent Taichung 29, inbred, and backcrossed to obtain the F1, F2 and BC1 population. The genetic analysis of the cross Taichung 29/(Taichung 29*6/Strubes Dickkopf) was assessed by inoculating the rust race CYR26 at seedling stage. Bulked segregant analysis (BSA) and F2 segregation analysis were used for detecting polymorphic primers to locate the gene. The resistance of the NIL Taichung 29*6/Strubes Dickkopf to CYR26 was controlled by a single dominant gene, named YrSD. The primer pair Xbarc59 on 5B was linked to YrSD and the genetic distance between Xbarc59 and YrSD was 2.4 cM. The molecular marker Xbarc59 closely linked to the gene YrSD could be used in marker-assisted selection for resistance to stripe rust in wheat breeding programmes.

  3. Molecular mapping of a recessive gene for resistance to stripe rust in barley.

    Science.gov (United States)

    Yan, G P; Chen, X M

    2006-08-01

    Barley stripe rust, caused by Puccinia striiformis f. sp. hordei, is one of the most important barley (Hordeum vulgare) diseases in the United States. The disease is best controlled using resistant cultivars. Barley genotype Grannenlose Zweizeilige (GZ) has a recessive gene (rpsGZ) that is effective against all races of P. striiformis f. sp. hordei identified so far in the USA. To develop a molecular map for mapping the gene, F(8 )recombinant inbred lines (RILs) were developed from the Steptoe X GZ cross through single-seed descent. Seedlings of the parents and RILs were evaluated for resistance to races PSH-14 and PSH-54 of P. striiformis f. sp. hordei under controlled greenhouse conditions. Genomic DNA was extracted from the parents and 182 F(8 )RILs and used for linkage analysis. The resistance gene analog polymorphism (RGAP) technique was used to identify molecular markers for rpsGZ. A linkage group for the gene was constructed with 12 RGAP markers, of which two markers co-segregated with the resistance locus, and two markers were closely linked to the locus with a genetic distance of 0.9 and 2.0 cM, respectively. These four markers were present only in the susceptible parent. The closest marker to the resistance allele was 11.7 cM away. Analyses of two sets of barley chromosome addition lines of wheat with the two RGAP markers that were cosegregating with the susceptibility allele showed that rpsGZ and the markers were located on the long arm of barley chromosome 4H. Further, tests with four simple sequence repeat (SSR) markers confirmed the chromosomal location of the rpsGZ gene and also integrated the RGAP markers into the known SSR-based linkage map of barley. The closest SSR marker EBmac0679 had a genetic distance of 7.5 cM with the gene in the integrated linkage map constructed with the 12 RGAP markers and 4 SSR markers. The information on chromosomal location and molecular markers for rpsGZ should be useful for incorporating this gene into commercial

  4. An introgression on wheat chromosome 4DL in RL6077 (Thatcher*6/PI 250413) confers adult plant resistance to stripe rust and leaf rust (Lr67).

    Science.gov (United States)

    Hiebert, Colin W; Thomas, Julian B; McCallum, Brent D; Humphreys, D Gavin; DePauw, Ronald M; Hayden, Matthew J; Mago, Rohit; Schnippenkoetter, Wendelin; Spielmeyer, Wolfgang

    2010-10-01

    Adult plant resistance (APR) to leaf rust and stripe rust derived from the wheat (Triticum aestivum L.) line PI250413 was previously identified in RL6077 (=Thatcher*6/PI250413). The leaf rust resistance gene in RL6077 is phenotypically similar to Lr34 which is located on chromosome 7D. It was previously hypothesized that the gene in RL6077 could be Lr34 translocated to another chromosome. Hybrids between RL6077 and Thatcher and between RL6077 and 7DS and 7DL ditelocentric stocks were examined for first meiotic metaphase pairing. RL6077 formed chain quadrivalents and trivalents relative to Thatcher and Chinese Spring; however both 7D telocentrics paired only as heteromorphic bivalents and never with the multivalents. Thus, chromosome 7D is not involved in any translocation carried by RL6077. A genome-wide scan of SSR markers detected an introgression from chromosome 4D of PI250413 transferred to RL6077 through five cycles of backcrossing to Thatcher. Haplotype analysis of lines from crosses of Thatcher × RL6077 and RL6058 (Thatcher*6/PI58548) × RL6077 showed highly significant associations between introgressed markers (including SSR marker cfd71) and leaf rust resistance. In a separate RL6077-derived population, APR to stripe rust was also tightly linked with cfd71 on chromosome 4DL. An allele survey of linked SSR markers cfd71 and cfd23 on a set of 247 wheat lines from diverse origins indicated that these markers can be used to select for the donor segment in most wheat backgrounds. Comparison of RL6077 with Thatcher in field trials showed no effect of the APR gene on important agronomic or quality traits. Since no other known Lr genes exist on chromosome 4DL, the APR gene in RL6077 has been assigned the name Lr67. PMID:20552325

  5. Molecular mapping of stripe rust resistance gene YrCH42 in Chinese wheat cultivar Chuanmai 42 and its allelism with Yr24 and Yr26.

    Science.gov (United States)

    Li, G Q; Li, Z F; Yang, W Y; Zhang, Y; He, Z H; Xu, S C; Singh, R P; Qu, Y Y; Xia, X C

    2006-05-01

    Stripe rust, caused by Puccinia striiformis f. sp. tritici (PST), is one of the most devastating diseases in common wheat (Triticum aestivum L.) worldwide. The objectives of this study were to map a stripe rust resistance gene in Chinese wheat cultivar Chuanmai 42 using molecular markers and to investigate its allelism with Yr24 and Yr26. A total of 787 F2 plants and 186 F3 lines derived from a cross between resistant cultivar Chuanmai 42 and susceptible line Taichung 29 were used for resistance gene tagging. Also 197 F2 plants from the cross Chuanmai 42xYr24/3*Avocet S and 726 F2 plants from Chuanmai 42xYr26/3*Avocet S were employed for allelic test of the resistance genes. In all, 819 pairs of wheat SSR primers were used to test the two parents, as well as resistant and susceptible bulks. Subsequently, nine polymorphic markers were employed for genotyping the F2 and F3 populations. Results indicated that the stripe rust resistance in Chuanmai 42 was conferred by a single dominant gene, temporarily designated YrCH42, located close to the centromere of chromosome 1B and flanked by nine SSR markers Xwmc626, Xgwm273, Xgwm11, Xgwm18, Xbarc137, Xbarc187, Xgwm498, Xbarc240 and Xwmc216. The resistance gene was closely linked to Xgwm498 and Xbarc187 with genetic distances of 1.6 and 2.3 cM, respectively. The seedling tests with 26 PST isolates and allelic tests indicated that YrCH42, Yr24 and Yr26 are likely to be the same gene. PMID:16525837

  6. Transcriptome Analysis Provides Insights into the Mechanisms Underlying Wheat Plant Resistance to Stripe Rust at the Adult Plant Stage

    Science.gov (United States)

    Hao, Yingbin; Wang, Ting; Wang, Kang; Wang, Xiaojie; Fu, Yanping; Huang, Lili; Kang, Zhensheng

    2016-01-01

    Stripe rust (or yellow rust), which is caused by Puccinia striiformis f. sp. tritici (Pst), is one of the most devastating wheat diseases worldwide. The wheat cultivar Xingzi 9104 (XZ) is an elite wheat germplasm that possesses adult plant resistance (APR), which is non–race-specific and durable. Thus, to better understand the mechanism underlying APR, we performed transcriptome sequencing of wheat seedlings and adult plants without Pst infection, and a total of 157,689 unigenes were obtained as a reference. In total, 2,666, 783 and 2,587 differentially expressed genes (DEGs) were found to be up- or down-regulated after Pst infection at 24, 48 and 120 hours post-inoculation (hpi), respectively, based on a comparison of Pst- and mock-infected plants. Among these unigenes, the temporal pattern of the up-regulated unigenes exhibited transient expression patterns during Pst infection, as determined through a Gene Ontology (GO) enrichment analysis. In addition, a Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis showed that many biological processes, including phenylpropanoid biosynthesis, reactive oxygen species, photosynthesis and thiamine metabolism, which mainly control the mechanisms of lignification, reactive oxygen species and sugar, respectively, are involved in APR. In particular, the continuous accumulation of reactive oxygen species may potentially contribute to the ability of the adult plant to inhibit fungal growth and development. To validate the bioinformatics results, 6 candidate genes were selected for further functional identification using the virus-induced gene silencing (VIGS) system, and 4 candidate genes likely contribute to plant resistance against Pst infection. Our study provides new information concerning the transcriptional changes that occur during the Pst-wheat interaction at the adult stage and will help further our understanding of the detailed mechanisms underlying APR to Pst. PMID:26991894

  7. Microtubule Polymerization Functions in Hypersensitive Response and Accumulation of H2O2 in Wheat Induced by the Stripe Rust.

    Science.gov (United States)

    Wang, Juan; Wang, Yang; Liu, Xinjie; Xu, Yuanliu; Ma, Qing

    2016-01-01

    The plant cytoskeleton, including microtubules and microfilaments, is one of the important factors in determining the polarity of cell division and growth, as well as the interaction of plants with invading pathogens. In defense responses of wheat against the stripe rust (Puccinia striiformis f. sp. tritici) infection, hypersensitive response is the most crucial event to prevent the spread of pathogens. In order to reveal the effect of microtubules on the hypersensitive cell death and H2O2 accumulation in the interaction of wheat (Triticum aestivum) cv. Suwon 11 with an incompatible race, CYR23, wheat leaves were treated with microtubule inhibitor, oryzalin, before inoculation. The results showed that the frequency of infection sites with hypersensitive response occurrence was significantly reduced, and hypersensitive cell death in wheat leaves was suppressed compared to the control. In addition, the frequency and the incidence of infected cells with H2O2 accumulation were also reduced after the treatment with oryzalin. Those results indicated that microtubules are related to hypersensitive response and H2O2 accumulation in wheat induced by the stripe rust, and depolymerization of microtubules reduces the resistance of plants to pathogen infection in incompatible interaction, suggesting that microtubules play a potential role in the expression of resistance of wheat against the stripe rust fungus. PMID:27610380

  8. Wheat rusts in the United States in 2015

    Science.gov (United States)

    In 2015 wheat stripe rust caused by Puccinia striiformis f. sp. graminis was widespread throughout the United States. Cool temperatures and abundant rainfall in the southern Great Plains allowed stripe rust to become widely established and spread throughout the Great Plains and eastern United States...

  9. Positional Cloning of a QTL for slow rusting in wheat

    Science.gov (United States)

    Stripe rust, caused by the fungus Puccinia striiformis f. sp. tritici is a devastating fungal disease in many wheat-growing regions of the world. New strategies to reduce stripe rust yield losses are required to satisfy the increasing world demand for cereals. New virulent races that appeared around...

  10. First Report of Orange Rust of Sugarcane Caused by Puccinia kuehnii in Ivory Coast and Cameroon

    Science.gov (United States)

    Orange rust of sugarcane caused by Puccinia kuehnii was detected in Florida in 2007. It was hypothesized that the pathogen originated from Africa because brown rust of sugarcane (syn. common rust) was introduced to the Western Hemisphere from Africa. Requests for rust infected sugarcane samples were...

  11. Development and identification of wheat mutants with some new root characteristics and resistance to stripe rust

    International Nuclear Information System (INIS)

    Wheat production is greatly affected by biotic factors and abiotic stresses. Therefore, it is necessary to develop some new wheat lines with disease resistance, abiotic stress tolerance and other characteristics using mutation techniques and biotechnology. In this study, twelve wheat materials with different backgrounds were tested for root characteristics in vitro and in the field. The results demonstrated that the intermediate materials derived from interspecies crosses between common wheat and Th.intermedium such as Zhong 4 Awnless and L1, Linkang 1 and Ningchun 4, had stronger root system, and showed better resistance to PEG than other wheat varieties. These materials might contain some genes controlling root traits or drought tolerance, and these characteristics might be derived from Th.intermedium. In addition, mature seeds of some materials and the calli derived from immature interspecies hybrid embryos were irradiated with γ-rays. Through field selection and laboratory identification, some new lines were developed from the offspring. Mutant TC2001-16 with a larger root system proved to be tolerant to drought stress, mutant TC2001-31 was resistant to stripe rust. (author)

  12. [Genetic analysis and molecular mapping of stripe rust resistance gene in a restore line of Thermo-Photo sensitive hybrid wheat MR168].

    Science.gov (United States)

    Ren, Yong; Li, Sheng-Rong; Li, Jun; Zhou, Qiang; DU, Xiao-Ying; Li, Tai-Jun; Yang, Wu-Yun; Zheng, You-Liang

    2011-11-01

    Stripe rust, caused by Puccinia striiformis f. sp. tritici, is an important limiting factor to popularize hybrid wheat. The objectives of this study were to map a stripe rust resistance gene in a Chinese thermo-photo-sensitive hybrid wheat restore line MR168 using gene postulation and SSR markers. MR168 was highly resistant to 23 Pst races including CYR29, CYR31, CYR32, and CYR33. The populations F1, BC1, F2, and F3 from the cross between MR168 and SY95-71 (a wheat cultivar susceptible to Pst races) were inoculated with the race of Pst CYR32 of China in greenhouse. MR168 carried a single dominant gene for resistance to CYR32, tentatively designated YrMR168. It originated from Liaochun 10, a spring wheat variety. A total of 183 F2 plants, the resistant and susceptible parents and resistant and susceptible bulks were used for resistance gene mapping with 329 pairs of wheat SSR markers.Five SSR markers on chromosome 1BS including Xgwm18, Xbarc187, Xwmc269, Xgwm273, and Xwmc406 were linked with YrMR168. The resistance gene was closely linked to Xgwm18 and Xbarc187 with the genetic distances of 1.9 and 2.4 cM, respectively. Xgwm18 and Xbarc187 could be used for molecular marker assisted selection of YrMR168 in hybrid wheat breeding program. PMID:22120084

  13. Screening of wheat germplasm for the source of resistance against leaf and stripe rust under climatic conditions in Bhakkar

    International Nuclear Information System (INIS)

    A field experiment was conducted to assess the level of resistance and susceptibility against stripe and leaf rust of wheat at Arid Zone Research 1, Institute, Bhakkar during, Rabi 2009, One hundred wheat genotypes were sown in second week of November. Each test line/variety of planted in two rows of 2 meter reach will two row of Morocco after every three entries to increase the disease pressure, fest lines/ varieties were inoculated thrice with highly susceptible Morocco and two most virulent Lr-26 and Lr-23 patho type. Out of eighty four test entries/varieties screened against le leaf rust, 5 exhibited resistant 21 moderately susceptible, 20 susceptible, 28 moderately resistant and 10 were highly susceptible. The present investigation indicated that there was no highly resistant lines/variety with zero disease severity. On the other hand, as regards stripe rust, out of thirty seven lines/varieties only two lines were susceptible to disease, Among other lines/ varieties, 12 resistant, 11 moderately resistant, 6 moderately susceptible and 2 susceptible against disease. Four (4) lines /varieties proved as highly resistant with zero disease severity.

  14. Molecular Mapping of a Stripe Rust Resistance Gene YrH9020a Transferred from Psathyrostachys huashanica Keng on Wheat Chromosome 6D

    Institute of Scientific and Technical Information of China (English)

    LIU Ze-guang; YAO Wei-yuan; SHEN Xue-xue; CHAO Kai-xiang; FAN Yu; LI Min-zhou; WANG Bao-tong; LI Qiang; JING Jin-xue

    2014-01-01

    Stripe rust (yellow rust), caused by Puccinia striiformis f. sp. tritici (Pst), is one of the most devastating diseases of wheat throughout the world. H9020-1-6-8-3 is a translocation line originally developed from interspeciifc hybridization between wheat line 7182 and Psathyrostachys huashanica Keng and is resistant to most Pst races in China. To identify the resistance gene(s) in the translocation line, H9020-1-6-8-3 was crossed with susceptible cultivar Mingxian 169, and seedlings of the parents, F1, F2, F3, and BC1 generations were tested with prevalent Chinese Pst race CYR32 under controlled greenhouse conditions. The results indicated that there is a single dominant gene, temporarily designated as YrH9020a, conferring resistance to CYR32. The resistance gene was mapped by the F2 population from Mingxian 169/H9020-1-6-8-3. It was linked to six microsatellite markers, including Xbarc196, Xbarc202, Xbarc96, Xgpw4372, Xbarc21, and Xgdm141, lfanked by Xbarc96 and Xbarc202 with at 4.5 and 8.3 cM, respectively. Based on the chromosomal locations of these markers and the test of Chinese Spring (CS) nullitetrasomic and ditelosomic lines, the gene was assigned to chromosome 6D. According to the origin and the chromosomal location, YrH9020a might be a new resistance gene to stripe rust. The lfanking markers linked to YrH9020a could be useful for marker-assisted selection in breeding programs.

  15. Constructing Physical and Genomic Maps for Puccinia striiformis f. sp. tritici, the Wheat Stripe Rust Pathogen, by Comparing Its EST Sequences to the Genomic Sequence of P. graminis f. sp. tritici, the Wheat Stem Rust Pathogen

    OpenAIRE

    Zhensheng Kang; Meinan Wang; Xianming Chen; Jinbiao Ma

    2010-01-01

    The wheat stripe rust fungus, Puccinia striiformis f. sp. tritici (Pst), does not have a known alternate host for sexual reproduction, which makes it impossible to study gene linkages through classic genetic and molecular mapping approaches. In this study, we compared 4,219 Pst expression sequence tags (ESTs) to the genomic sequence of P. graminis f. sp. tritici (Pgt), the wheat stem rust fungus, using BLAST searches. The percentages of homologous genes varied greatly among different Pst libr...

  16. Putative Thinopyrum intermedium-derived stripe rust resistance gene Yr50 maps on wheat chromosome arm 4BL.

    Science.gov (United States)

    Liu, Jie; Chang, Zhijian; Zhang, Xiaojun; Yang, Zujun; Li, Xin; Jia, Juqing; Zhan, Haixian; Guo, Huijuan; Wang, Jianming

    2013-01-01

    Stripe rust-resistant wheat introgression line CH223 was developed by crossing the resistant partial amphiploid TAI7047 derived from Thinopyrum intermedium with susceptible cultivars. The resistance is effective against all the existing Chinese stripe rust races, including the most widely virulent and predominant pathotypes CYR32 and CYR33. Cytological analyses using GISH detected no chromosomal segments from Th. intermedium. It was presumed that the segment was too small to be detected. Normal bivalent pairing at meiosis in CH223 and its hybrids confirmed its stability. Genetic analysis of the F(1), F(2), F(3) and BC(1) populations from crosses of CH223 with susceptible lines indicated that resistance was controlled by a single dominant gene. The resistance gene was mapped using an F(2:3) population from Taichung 29/CH223. The gene was linked to five co-dominant genomic SSR markers, Xgwm540, Xbarc1096, Xwmc47, Xwmc310 and Xgpw7272, and flanked by Xbarc1096 and Xwmc47 at 8.0 and 7.2 cM, respectively. Using the Chinese Spring nulli-tetrasomic and ditelosomic lines, the polymorphic markers and the resistance gene were assigned to chromosome arm 4BL. As no permanently named stripe rust resistance genes had been assigned to chromosome 4BL, this new resistance gene is designated Yr50. The gene, together with the identified closely linked markers, could be used in marker-assisted selection to combine two or more resistance genes in a single genotype. PMID:23052018

  17. Mapping of a major stripe rust resistance gene in Chinese native wheat variety Chike using microsatellite markers.

    Science.gov (United States)

    Liu, Fanghui; Niu, Yongchun; Deng, Hui; Tan, Genjia

    2007-12-01

    Chike (accession number Su1900), a Chinese native wheat (Triticum aestivum L.) variety, is resistant to the currently prevailing physiological races of Puccinia striiformis Westend. f. sp. tritici in China. Genetic analysis indicated that resistance to the physiological race CY32 of the pathogen in the variety was controlled by one dominant gene. In this study, BSA (bulked segregant analysis) methods and SSRs (simple sequence repeats) marker polymorphic analysis are used to map the gene. The resistant and susceptible DNA bulks were prepared from the segregating F2 population of the cross between Taichung 29, a susceptible variety as maternal parent, and Chike as paternal parent. Over 400 SSR primers were screened, and five SSR markers Xwmc44, Xgwm259, Xwmc367, Xcfa2292, and Xbarc80 on the chromosome arm 1BL were found to be polymorphic between the resistant and the susceptible DNA bulks as well as their parents. Genetic linkage was tested on segregating F2 population with 200 plants, including 140 resistant and 60 susceptible plants. All the five SSR markers were linked to the stripe rust resistance gene in Chike. The genetic distances for the markers Xwmc44, Xgwm259, Xwmc367, Xcfa2292, and Xbarc80 to the target gene were 8.3 cM, 9.1 cM, 17.2 cM, 20.6 cM, and 31.6 cM, respectively. Analysis using 21 nulli-tetrasomic Chinese Spring lines further confirmed that all the five markers were located on chromosome 1B. On the basis of the above results, it is reasonable to assume that the major stripe rust resistance gene YrChk in Chike was located on the chromosome arm 1BL, and its comparison with the other stripe rust resistance genes located on 1B suggested that YrChk may be a novel gene that provides the resistance against stripe rust in Chike. Exploration and utilization of resources of disease resistance genes in native wheat varieties will be helpful both to diversify the resistance genes and to amend the situation of resistance gene simplification in the commercial

  18. Distribution, Frequency and Variation of Stripe Rust Resistance Loci Yr10, Lr34/Yr18 and Yr36 in Chinese Wheat Cultivars

    Institute of Scientific and Technical Information of China (English)

    Cuiling Yuan; Hui Jiang; Honggang Wang; Kun Li; Heng Tang; Xianbin Li; Daolin Fu

    2012-01-01

    Wheat stripe rust is a devastating disease in many regions of the world.In wheat,49 resistance genes for stripe rust have been officially documented,but only three genes are cloned,including the race-specific resistance Yr10 candidate gene (Yr10CG) and slow-rusting genes Lr34/Yr18 (hereafter designated as Yr18) and Yr36.In this study,we developed gene-specific markers for these genes and used them to screen a collection of 659 wheat accessions,including 485 Chinese cultivars.Thirteen percent and eleven percent of the tested Chinese cultivars were positive for the markers for Yr10CG and Yr18RH (the resistant haplotype of Yr18),respectively,but none were positive for the Yr36 marker.Since there is a limited use of the Yr10 gene in Chinese wheat,the relatively high frequency of wheat varieties with the Yr10CG marker suggests that the identity of the Yr10 gene is unknown.With regards to the Yr18 gene,29% of the tested cultivars that are used in the Middle and Lower Yangtze Valleys' winter wheat zone were positive for Yr18RH markers.A non-functional allele of Yr18RHwas identified in ‘Mingxian 169',a commonly used susceptible check for studying stripe rust.The data presented here will provide useful information for marker-assisted selection for wheat stripe rust resistance.

  19. Differential gene expression in incompatible interaction between wheat and stripe rust fungus revealed by cDNA-AFLP and comparison to compatible interaction

    Directory of Open Access Journals (Sweden)

    Han Qingmei

    2010-01-01

    Full Text Available Abstract Background Stripe rust of wheat, caused by Puccinia striiformis f. sp. tritici (Pst, is one of the most important diseases of wheat worldwide. Due to special features of hexaploid wheat with large and complex genome and difficulties for transformation, and of Pst without sexual reproduction and hard to culture on media, the use of most genetic and molecular techniques in studying genes involved in the wheat-Pst interactions has been largely limited. The objective of this study was to identify transcriptionally regulated genes during an incompatible interaction between wheat and Pst using cDNA-AFLP technique Results A total of 52,992 transcript derived fragments (TDFs were generated with 64 primer pairs and 2,437 (4.6% of them displayed altered expression patterns after inoculation with 1,787 up-regulated and 650 down-regulated. We obtained reliable sequences (>100 bp for 255 selected TDFs, of which 113 (44.3% had putative functions identified. A large group (17.6% of these genes shared high homology with genes involved in metabolism and photosynthesis; 13.8% to genes with functions related to disease defense and signal transduction; and those in the remaining groups (12.9% to genes involved in transcription, transport processes, protein metabolism, and cell structure, respectively. Through comparing TDFs identified in the present study for incompatible interaction and those identified in the previous study for compatible interactions, 161 TDFs were shared by both interactions, 94 were expressed specifically in the incompatible interaction, of which the specificity of 43 selected transcripts were determined using quantitative real-time polymerase chain reaction (qRT-PCR. Based on the analyses of homology to genes known to play a role in defense, signal transduction and protein metabolism, 20 TDFs were chosen and their expression patterns revealed by the cDNA-AFLP technique were confirmed using the qRT-PCR analysis. Conclusion We

  20. QTL analysis of the spring wheat "Chapio" identifies stable stripe rust resistance despite inter-continental genotype × environment interactions.

    Science.gov (United States)

    Yang, E-N; Rosewarne, G M; Herrera-Foessel, S A; Huerta-Espino, J; Tang, Z-X; Sun, C-F; Ren, Z-L; Singh, R P

    2013-07-01

    Chapio is a spring wheat developed by CIMMYT in Mexico by a breeding program that focused on multigenic resistances to leaf rust and stripe rust. A population consisting of 277 recombinant inbred lines (RILs) was developed by crossing Chapio with Avocet. The RILs were genotyped with DArT markers (137 randomly selected RILs) and bulked segregant analysis conducted to supplement the map with informative SSR markers. The final map consisted of 264 markers. Phenotyping against stripe rust was conducted for three seasons in Toluca, Mexico and at three sites over two seasons (total of four environments) in Sichuan Province, China. Significant loci across the two inter-continental regions included Lr34/Yr18 on 7DS, Sr2/Yr30 on 3BS, and a QTL on 3D. There were significant genotype × environment interactions with resistance gene Yr31 on 2BS being effective in most of the Toluca environments; however, a late incursion of a virulent pathotype in 2009 rendered this gene ineffective. This locus also had no effect in China. Conversely, a 5BL locus was only effective in the Chinese environments. There were also complex additive interactions. In the Mexican environments, Yr31 suppressed the additive effect of Yr30 and the 3D locus, but not of Lr34/Yr18, while in China, the 3D and 5BL loci were generally not additive with each other, but were additive when combined with other loci. These results indicate the importance of maintaining diverse, multi-genic resistances as Chapio had stable inter-continental resistance despite the fact that there were QTLs that were not effective in either one or the other region. PMID:23558982

  1. Identification and mapping of adult plant stripe rust resistance in soft red winter wheat VA00W-38, Pioneer brand 26R46, and Coker 9553

    Science.gov (United States)

    Since 2000, many of the previously effective wheat (Triticum aestivum L.) seedling stripe rust (pathogen Puccinia striiformis Westend. f.sp. tritici Eriks) resistance genes have become ineffective to the new more aggressive races of the pathogen. Because seedling resistance genes work on a gene for...

  2. A new early-warning system for stripe rust affecting wheat and triticale: Host-pathogen interactions under different environmental conditions

    DEFF Research Database (Denmark)

    Rodriguez Algaba, Julian; Justesen, Annemarie Fejer; Hovmøller, Mogens Støvring

    Stripe (yellow) rust has been the most damaging disease in Danish organic wheat and triticale production since 2009. There were estimated losses of approximately 50 million DKK (9 million USD) in 2009. Until that time, triticale was considered the most robust cereal crop for organic farming. The...

  3. Molecular mapping of Yr53, a new gene for stripe rust resistance in durum wheat accession PI 480148 and its transfer to common wheat.

    Science.gov (United States)

    Xu, L S; Wang, M N; Cheng, P; Kang, Z S; Hulbert, S H; Chen, X M

    2013-02-01

    Stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is one of the most damaging diseases of wheat worldwide. It is essential to identify new genes for effective resistance against the disease. Durum wheat PI 480148, originally from Ethiopia, was resistant in all seedling tests with several predominant Pst races in the US under controlled greenhouse conditions and at multiple locations subject to natural infection for several years. To map the resistance gene(s) and to transfer it to common wheat, a cross was made between PI 480148 and susceptible common wheat genotype Avocet S (AvS). Resistant F(3) plants with 42 chromosomes were selected cytologically and by testing with Pst race PST-100. A total of 157 F(4) plants from a single F(3) plant with 2n = 42 tested with PST-100 segregated in a 3 resistant: 1 susceptible ratio, indicating that a single dominant gene from PI 480148 conferred resistance. Using the F(3:4) population and the resistance gene-analog polymorphism (RGAP) and simple sequence repeat (SSR) markers, the gene was mapped to the long arm of chromosome 2B. SSR marker Xwmc441 and RGAP marker XLRRrev/NLRRrev ( 350 ) flanked the resistance gene by 5.6 and 2.7 cM, respectively. The effective resistance of the gene to an Australian Pst isolate virulent to Yr5, which is also located on 2BL and confers resistance to all US Pst races, together with an allelism test of the two genes, indicated that the gene from PI 480148 is different from Yr5 and should be a new and useful gene for resistance to stripe rust. Resistant common wheat lines with plant types similar to AvS were selected for use in breeding programs. PMID:23090143

  4. Identification and mapping QTL for high-temperature adult-plant resistance to stripe rust in winter wheat (Triticum aestivum L.) cultivar 'Stephens'.

    Science.gov (United States)

    Santra, D K; Chen, X M; Santra, M; Campbell, K G; Kidwell, K K

    2008-09-01

    High-temperature adult-plant (HTAP) resistance from the winter wheat (Triticum aestivum) cultivar 'Stephens' has protected wheat crops from stripe rust caused by Puccinia striiformis f. sp. tritici for 30 years. The objectives of this study were to identify quantitative trait loci (QTL) for HTAP resistance in Stephens through genetic linkage analysis and identify DNA markers linked to the QTL for use in marker-assisted breeding. Mapping populations consisted of 101 recombinant inbred lines (RILs) through single-seed descent from 'Stephens' (resistant) x 'Michigan Amber' (susceptible). F(5), F(6) and F(7) RILs were evaluated for stripe rust resistance at Pullman, WA in 1996, 1997 and 1998, respectively, whereas F(8) RILs were evaluated at Mt Vernon, WA, USA in 2005. The 101 F(8) RILs were evaluated with 250 resistance gene analog polymorphism (RGAP), 245 simple sequence repeat (SSR) and 1 sequence tagged site (STS) markers for genetic linkage map construction. Two QTL, which explained 48-61% of the total phenotypic variation of the HTAP resistance in Stephens, were identified. QYrst.wgp-6BS.1 was within a 3.9-cM region flanked by Xbarc101 and Xbarc136. QYrst.wgp-6BS.2 was mapped in a 17.5-cM region flanked by Xgwm132 and Xgdm113. Both two QTL were physically mapped to the short arm of chromosome 6B, but in different bins. Validation and polymorphism tests of the flanking markers in 43 wheat genotypes indicated that the molecular markers associated with these QTL should be useful in marker-assisted breeding programs to efficiently incorporate HTAP resistance into new wheat cultivars. PMID:18584147

  5. Selection of parents for crossing based on genotyping and phenotyping for stripe rust (Puccinia striiformis) resistance and agronomic traits in bread wheat breeding.

    Science.gov (United States)

    Khan, Muhammad Irfaq; Khan, Mir Ajab; Khan, Abdul Jabbar; Khattak, Gul Sanat Shah; Mohammad, Tila; Ahmad, Mushtaq

    2011-01-01

    Bread wheat (Triticum aestivum L.) germplasm consisting of 45 genotypes were clustered phenotypically using ten morphological traits and Area Under Disease Progress Curve (AUDPC) as measure of stripe rust resistance. The clustering was ratified by using twenty three molecular markers (SSR, EST and STS) linked to stripe rust (Puccinia striiformis f. sp. tritici) resistant QTLs. The aim was to asses the extent of genetic variability among the genotypes in order to select the parents for crossing between the resistant and susceptible genotypes with respect to stripe rust. The Euclidian dissimilarity values resulted from phenotypic data regarding morphological traits and AUDPC were used to construct a dendrogram for clustering the accessions. Using un-weighted pair group method with arithmetic means, another dendrogram resulted from the similarity coefficient values was used to distinguish the genotypes with respect to stripe rust. Clustering based on phenotypic data produced two major groups and five clusters (with Euclidian dissimilarity ranging from 244 to 16.16) whereas genotypic data yielded two major groups and four clusters (with percent similarity coefficient values ranging from 0.1 to 46.0) to separate the gene pool into highly resistant, resistant, moderately resistant, moderately susceptible and susceptible genotypes. With few exceptions, the outcome of both type of clustering was almost similar and resistant as well as susceptible genotypes came in the same clusters of molecular genotyping as yielded by phenotypic clustering. As a result seven genotypes (Bakhtawar-92, Frontana, Saleem 2000, Tatara, Inqilab-91, Fakhre Sarhad and Karwan) of diverse genetic background were selected for pyramiding stripe rust resistant genes as well as some other agronomic traits after hybridization. PMID:22329159

  6. Genome-Wide Linkage Mapping of QTL for Adult-Plant Resistance to Stripe Rust in a Chinese Wheat Population Linmai 2 × Zhong 892

    Science.gov (United States)

    Liu, Jindong; He, Zhonghu; Wu, Ling; Bai, Bin; Wen, Weie; Xie, Chaojie; Xia, Xianchun

    2015-01-01

    Stripe rust is one of the most devastating diseases of wheat (Triticum aestivum) worldwide. Adult-plant resistance (APR) is an efficient approach to provide long-term protection of wheat from the disease. The Chinese winter wheat cultivar Zhong 892 has a moderate level of APR to stripe rust in the field. To determine the inheritance of the APR resistance in this cultivar, 273 F6 recombinant inbred lines (RILs) were developed from a cross between Linmai 2 and Zhong 892. The RILs were evaluated for maximum disease severity (MDS) in two sites during the 2011–2012, 2012–2013 and 2013–2014 cropping seasons, providing data for five environments. Illumina 90k SNP (single nucleotide polymorphism) chips were used to genotype the RILs and their parents. Composite interval mapping (CIM) detected eight QTL, namely QYr.caas-2AL, QYr.caas-2BL.3, QYr.caas-3AS, QYr.caas-3BS, QYr.caas-5DL, QYr.caas-6AL, QYr.caas-7AL and QYr.caas-7DS.1, respectively. All except QYr.caas-2BL.3 resistance alleles were contributed by Zhong 892. QYr.caas-3AS and QYr.caas-3BS conferred stable resistance to stripe rust in all environments, explaining 6.2–17.4% and 5.0–11.5% of the phenotypic variances, respectively. The genome scan of SNP sequences tightly linked to QTL for APR against annotated proteins in wheat and related cereals genomes identified two candidate genes (autophagy-related gene and disease resistance gene RGA1), significantly associated with stripe rust resistance. These QTL and their closely linked SNP markers, in combination with kompetitive allele specific PCR (KASP) technology, are potentially useful for improving stripe rust resistances in wheat breeding. PMID:26714310

  7. Genetic analysis of adult plant, quantitative resistance to stripe rust in wheat cultivar 'Stephens' in multi-environment trials.

    Science.gov (United States)

    Dolores Vazquez, M; James Peterson, C; Riera-Lizarazu, Oscar; Chen, Xianming; Heesacker, Adam; Ammar, Karim; Crossa, Jose; Mundt, Christopher C

    2012-01-01

    The wheat (Triticum aestivum L.) cultivar 'Stephens' has been grown commercially in the USA Pacific Northwest for 30 years. The durable resistance of 'Stephens' to stripe rust (Puccinia striiformis f. sp. tritici) was believed to be due to a combination of seedling and adult plant resistance genes. Multilocation field trials, diversity array technology (DArT), and simple sequence repeat (SSR) markers were used to identify quantitative trait loci (QTL) for resistance. Recombinant inbred lines were assessed for stripe rust response in eight locations/years, five in 2008 and three in 2009. The data from Mt. Vernon, WA, differed from all other environments, and composite interval mapping (CIM) identified three QTL, QYrst.orr-1AL, QYrst.orr-4BS, and QYrpl.orr-6AL, which accounted for 12, 11, and 6% of the phenotypic variance, respectively. CIM across the remaining six environments identified four main QTL. Two QTL, QYrst.orr-2BS.2 and QYrst.orr-7AS, were detected in five of six environments and explained 11 and 15% of the phenotypic variance, respectively. Two other QTL, QYrst.orr-2AS and QYrpl.orr-4BL, were detected across four and three of six environments, and explained 19 and 9% of the phenotypic variance, respectively. The susceptible parent 'Platte' contributed QYrpl.orr-4BL and QYrpl.orr-6AL, with the remaining QTL originating from 'Stephens'. For each environment, additional minor QTL were detected, each accounting for 6-10% of the phenotypic variance. Different QTL with moderate effects were identified in both 'Stephens' and 'Platte'. Significant QTL × environment interactions were evident, suggesting that specificity to plant stage, pathogen genotype, and/or temperature was important. PMID:21912857

  8. Isolation and characterization of a wheat--Psathyrostachys huashanica 'Keng' 3Ns disomic addition line with resistance to stripe rust.

    Science.gov (United States)

    Du, Wanli; Wang, Jing; Pang, Yuhui; Wang, Liangming; Wu, Jun; Zhao, Jixin; Yang, Qunhui; Chen, Xinhong

    2014-01-01

    We isolated a wheat germplasm line, 22-2, which was derived from common wheat (Triticum aestivum '7182') and Psathyrostachys huashanica 'Keng' (2n = 2x = 14, NsNs). Genomic composition and homoeologous relationships of 22-2 was analyzed using cytology, genomic in situ hybridization (GISH), EST-SSR, and EST-STS to characterize the alien chromatin in the transfer line. The cytological investigations showed that the chromosome number and configuration were 2n = 44 = 22 II. Mitotic and meiotic GISH using P. huashanica genomic DNA as the probe indicated that 22-2 contained a pair of P. huashanica chromosomes. The genomic affinities of the introduced P. huashanica chromosomes were determined by EST-SSR and EST-STS using multiple-loci markers from seven wheat homoeologous groups between the parents and addition line. One EST-SSR and 17 EST-STS markers, which were located on the homoeologous group 3 chromosomes of wheat, amplified polymorphic bands in 22-2 that were unique to P. huashanica. Thus, these markers suggested that the introduced Ns chromosome pair belonged to homoeologous group 3, so we designated 22-2 as a 3Ns disomic addition line. Based on disease reaction to mixed races (CYR31, CYR32, and Shuiyuan14) of stripe rust in the adult stages, 22-2 was found to have high resistance to stripe rust, which was possibly derived from its P. huashanica parent. Consequently, the new disomic addition line 22-2 could be a valuable donor source for wheat improvement depending on the excellent agronomic traits, especially, the introduction of novel disease resistance genes into wheat during breeding programs. PMID:24564214

  9. Identification of expressed genes during compatible interaction between stripe rust (Puccinia striiformis and wheat using a cDNA library

    Directory of Open Access Journals (Sweden)

    Huang Lili

    2009-12-01

    Full Text Available Abstract Background Wheat stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst, is one of the most destructive diseases of wheat worldwide. To establish compatibility with the host, Pst forms special infection structures to invade the plant with minimal damage to host cells. Although compatible interaction between wheat and Pst has been studied using various approaches, research on molecular mechanisms of the interaction is limited. The aim of this study was to develop an EST database of wheat infected by Pst in order to determine transcription profiles of genes involved in compatible wheat-Pst interaction. Results Total RNA, extracted from susceptible infected wheat leaves harvested at 3, 5 and 8 days post inoculation (dpi, was used to create a cDNA library, from which 5,793 ESTs with high quality were obtained and clustered into 583 contigs and 2,160 singletons to give a set of 2,743 unisequences (GenBank accessions: GR302385 to GR305127. The BLASTx program was used to search for homologous genes of the unisequences in the GenBank non-redundant protein database. Of the 2,743 unisequences, 52.8% (the largest category were highly homologous to plant genes; 16.3% to fungal genes and 30% of no-hit. The functional classification of all ESTs was established based on the database entry giving the best E-value using the Bevan's classification categories. About 50% of the ESTs were significantly homologous to genes encoding proteins with known functions; 20% were similar to genes encoding proteins with unknown functions and 30% did not have significant homology to any sequence in the database. The quantitative real-time PCR (qRT-PCR analysis determined the transcription profiles and their involvement in the wheat-Pst interaction for seven of the gene. Conclusion The cDNA library is useful for identifying the functional genes involved in the wheat-Pst compatible interaction, and established a new database for studying Pst pathogenesis genes

  10. Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust

    OpenAIRE

    Cantu, D.; Govindarajulu, M; Kozik, A.; Wang, M.; Chen, X.; Kojima, KK; Jurka, J; Michelmore, RW; Dubcovsky, J

    2011-01-01

    Background: The wheat stripe rust fungus (Puccinia striiformis f. sp. tritici, PST) is responsible for significant yield losses in wheat production worldwide. In spite of its economic importance, the PST genomic sequence is not currently available. Fortunately Next Generation Sequencing (NGS) has radically improved sequencing speed and efficiency with a great reduction in costs compared to traditional sequencing technologies. We used Illumina sequencing to rapidly access the genomic sequence ...

  11. Next Generation Sequencing Provides Rapid Access to the Genome of Puccinia striiformis f. sp. tritici, the Causal Agent of Wheat Stripe Rust

    OpenAIRE

    Cantu, Dario; Govindarajulu, Manjula; Kozik, Alex; Wang, Meinan; Chen, Xianming; Kojima, Kenji K.; Jurka, Jerzy; Michelmore, Richard W; Dubcovsky, Jorge

    2011-01-01

    Background The wheat stripe rust fungus (Puccinia striiformis f. sp. tritici, PST) is responsible for significant yield losses in wheat production worldwide. In spite of its economic importance, the PST genomic sequence is not currently available. Fortunately Next Generation Sequencing (NGS) has radically improved sequencing speed and efficiency with a great reduction in costs compared to traditional sequencing technologies. We used Illumina sequencing to rapidly access the genomic sequence o...

  12. Identifying QTL for high-temperature adult-plant resistance to stripe rust (Puccinia striiformis f. sp. tritici) in the spring wheat (Triticum aestivum L.) cultivar 'Louise'.

    Science.gov (United States)

    Carter, Arron Hyrum; Chen, X M; Garland-Campbell, K; Kidwell, K K

    2009-10-01

    Over time, many single, all-stage resistance genes to stripe rust (Puccinia striiformis f. sp. tritici) in wheat (Triticum aestivum L.) are circumvented by race changes in the pathogen. In contrast, high-temperature, adult-plant resistance (HTAP), which only is expressed during the adult-plant stage and when air temperatures are warm, provides durable protection against stripe rust. Our objective was to identify major quantitative trait loci (QTL) for HTAP resistance to stripe rust in the spring wheat cultivar 'Louise'. The mapping population consisted of 188 recombinant inbred lines (RIL) from a Louise (resistant) by 'Penawawa' (susceptible) cross. F(5:6) lines were evaluated for stripe rust reaction under natural infection in replicated field trials at five locations in the US Pacific Northwest in 2007 and 2008. Infection type (IT) and disease severity were recorded for each RIL 2-4 times per location. In all environments, Penawawa, the susceptible parent, was rated with an IT ranging from 6 to 8 at all growth stages evaluated. In contrast, Louise, the resistant parent, was rated with an IT of 2 or 3 across growth stages. Distribution of IT values was bimodal, indicating a single major gene was affecting the trait. The parents and RIL population were evaluated with 295 polymorphic simple sequence repeat and one single nucleotide polymorphism markers. One major QTL, designated QYrlo.wpg-2BS, associated with HTAP resistance in Louise, was detected on chromosome 2BS (LOD scores ranging from 5.5 to 62.3 across locations and years) within a 16.9 cM region flanked by Xwmc474 and Xgwm148. SSR markers associated with QYrlo.wpg-2BS are currently being used in marker-based forward breeding strategies to transfer the target region into adapted germplasm to improve the durability of resistance in resulting cultivars. PMID:19644666

  13. Molecular Mapping of YrSP and Its Relationship with Other Genes for Stripe Rust Resistance in Wheat Chromosome 2BL.

    Science.gov (United States)

    Feng, J Y; Wang, M N; Chen, X M; See, D R; Zheng, Y L; Chao, S M; Wan, A M

    2015-09-01

    Stripe rust, caused by Puccinia striiformis f. sp. tritici, is an important disease of wheat worldwide. Resistance is the best way to control the disease. YrSP, a gene originally from 'Spaldings Prolific' wheat and providing resistance to a broad spectrum of races, is used for differentiating P. striiformis f. sp. tritici races but its chromosomal location is not clear. To map YrSP, a near-isogenic line (AvSYrSPNIL) was backcrossed to the recurrent parent, Avocet S. Genetic analysis of the BC7F1, BC8, BC7F2, and BC7F3 progenies confirmed a single dominant gene for resistance. In total, 182 BC7F2 plants and their derived BC7F3 lines were phenotyped with an avirulent P. striiformis f. sp. tritici race and genotyped with simple-sequence repeat (SSR), single-nucleotide polymorphism (SNP), and sequence-tagged site (STS) markers. A linkage map was constructed with 3 SSR, 17 SNP, and 3 STS markers covering 23.3 centimorgans (cM). Markers IWA638 and dp269 were 0.6 cM proximal and 1.5 cM distal, respectively, to YrSP. The gene was mapped in chromosome bin 2BL-C-0.5, physically within the proximal 50% of the chromosome 2BL arm. Allelism tests based on F2 phenotypes indicated that YrSP is closely linked to but not allelic with genes Yr5, Yr7, Yr43, Yr44, and Yr53. Infection type data from tests with 10 historical and currently predominant P. striiformis f. sp. tritici races in the United States also demonstrated differences in specificity between YrSP and the other genes. The specificity of YrSP is useful in differentiating P. striiformis f. sp. tritici races and studying the plant-pathogen interactions, and the information of chromosomal location of the gene and its tightly linked markers should be useful in developing resistant cultivars when combined with other genes for resistance to stripe rust. PMID:25871858

  14. Molecular mapping of stripe rust resistance gene YrSE5756 in synthetic hexaploid wheat and its transfer to common wheat

    International Nuclear Information System (INIS)

    Synthetic hexaploid wheat is an important germplasm resource for transfer of beneficial genes from alien species to common wheat (Triticum aestivum L.). Synthetic hexaploid wheat SE5756 confers a high level of resistance against a wide range of races of Puccinia striiformis West. f. sp. tritici Eriks. et Henn.(Pst). The objectives of this study were to determine the inheritance pattern, adjacent molecular markers, and chromosomal location of the stripe rust resistance gene in SE5756 and to develop new germplasm. We constructed a segregating population of 116 F2 plants and corresponding F2:3 families from a cross between SE5756 and Xinong979 with Pst races CYR32. Genetic analysis revealed that a single dominant gene, tentatively designated as YrSE5756, was responsible for seedling stage stripe rust resistance in SE5756. A genetic map, encompassing Xwmc626, Xwmc269, Xgwm11, Xbarx137, Xwmc419, Xwmc85, Xgpw5237, Xwmc134, WE173, Xwmc631, and YrSE5756, spanned 70.1 cM on chromosome 1BS. Xwmc419 and Xwmc85 were flanking markers tightly linked to YrSE5756 at genetic distances of 2.3 and 1.8 cM. Typical adult plant responses of the SE5756, varieties of the carrier Yr10 and Yr15, Chuanmai 42 (Yr24/Yr26), Yuanfeng 175 (Yr24/Yr26) and Huixianhong resistant to mixture Pst races (CYR32, CYR33 and V26) were experimented. The results showed that YrSE5756 was likely a new resistance stripe rust gene different from Yr24/Yr26, Yr10 and Yr15. From cross and backcross populations of SE5756/Xinong 979, we developed four new wheat lines with large seeds, stripe rust resistance, and improved agronomic traits: N07178-1, N07178-2, N08256-1, and N08256-2. These new germplasm lines could serve as sources of resistance to stripe rust in wheat breeding. SE5756 has the very vital significance in the development of breeding and expand our resistance germplasm resource gene pool. (author)

  15. Construction and characterization of a full-length cDNA library for the wheat stripe rust pathogen (Puccinia striiformis f. sp. tritici

    Directory of Open Access Journals (Sweden)

    Chen Xianming

    2007-06-01

    Full Text Available Abstract Background Puccinia striiformis is a plant pathogenic fungus causing stripe rust, one of the most important diseases on cereal crops and grasses worldwide. However, little is know about its genome and genes involved in the biology and pathogenicity of the pathogen. We initiated the functional genomic research of the fungus by constructing a full-length cDNA and determined functions of the first group of genes by sequence comparison of cDNA clones to genes reported in other fungi. Results A full-length cDNA library, consisting of 42,240 clones with an average cDNA insert of 1.9 kb, was constructed using urediniospores of race PST-78 of P. striiformis f. sp. tritici. From 196 sequenced cDNA clones, we determined functions of 73 clones (37.2%. In addition, 36 clones (18.4% had significant homology to hypothetical proteins, 37 clones (18.9% had some homology to genes in other fungi, and the remaining 50 clones (25.5% did not produce any hits. From the 73 clones with functions, we identified 51 different genes encoding protein products that are involved in amino acid metabolism, cell defense, cell cycle, cell signaling, cell structure and growth, energy cycle, lipid and nucleotide metabolism, protein modification, ribosomal protein complex, sugar metabolism, transcription factor, transport metabolism, and virulence/infection. Conclusion The full-length cDNA library is useful in identifying functional genes of P. striiformis.

  16. Identification of an AFLP marker linked to the stripe rust resistance gene Yr1O in wheat

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    AFLP analysis of near-isogenic lines of the stripe rust resistance gene Yr10 was carried out with 6 Pst Ⅰprimers and 10 Taq Ⅰ -primers with the donor parent of Yr10 gene as the check. A total of about 4200 distinguishable bands were amplified, of which 5 were stable. The genetic linkage of the 5 polymorphic DNA fragments with the target gene were tested preliminarily on a segregating F2 population derived from a cross between the gene donor parent "Moro" and susceptible cultivar "Mingxian 169". The DNA fragment PT0502 was found closely linked to the Yr10 gene and cloned and sequenced. Based on the sequence specific primers for PCR were designed and synthesized. Genetic linkage analysis with 195 segregating F2 plants indicated that the genetic distance was 05 cM between the main product SC200 fragment produced by PCR with the primers and the Yr10 gene. The primers can be used to detect the Yr10 gene quickly, effectively and exactly.``

  17. The expression and genetics of resistance to stripe (yellow) rust in three European and four New Zealand wheat cultivars.

    Science.gov (United States)

    Pathan, Amin K; Park, Robert F; Wellings, Colin R; Bariana, Harbans S

    2007-01-01

    Adult plant resistance (APR) to stripe rust in three European (Pegaso, Victo and Aztec) and four New Zealand cultivars (Weka, Kopara, Kokart and Takahe) was characterised using hybrid analysis and tests of allelism. In agreement with earlier work, the APR in most of these cultivars appeared to be controlled by two or more genes with additive effects. It was suggested that heavy selection pressure should be avoided in early generations in breeding programs utilising APR, because lines in which APR genes are heterozygous may display lower levels of resistance due to the incompletely dominant and interactive nature of many APRs. Such lines are capable of generating more resistant progenies following selfing. It was also demonstrated that it is possible to misclassify F2 plants as susceptible if APR genes are in a heterozygous condition, especially in the case of gene(s) conferring intermediate levels of resistance. The presence of a common APR gene in Kopara and Takahe, and perhaps Weka, was suggested because all shared a common parent in their pedigree and no susceptible plants were observed in F2 populations derived from intercrossing them. The difficulties inherent in conducting genetic studies on APRs and the need for large population sizes for such studies were emphasised. PMID:17666772

  18. Red stripe caused by Acidovirax avenae subsp. avenae in Louisiana sugarcane

    Science.gov (United States)

    Red stripe of sugarcane caused by Acidovirax avenae subsp. avenae is considered to be of minor importance because, most often when found, only the mild leaf stripe symptom is observed. In 2010, both leaf stripe and the more severe top rot symptom were observed in commercial sugarcane fields in Louis...

  19. Identification and mapping stripe rust resistance gene YrLM168a using extreme individuals and recessive phenotype class in a complicate genetic background.

    Science.gov (United States)

    Feng, Junyan; Chen, Guoyue; Wei, Yuming; Liu, Yaxi; Jiang, Qiantao; Li, Wei; Pu, Zhien; Lan, Xiujin; Dai, Shoufen; Zhang, Min; Zheng, Youliang

    2015-12-01

    The identification and characterization of resistance genes effective against stripe rust of wheat is beneficial for modern wheat breeding programs. Molecular markers to such genes facilitate their deployment. The variety Milan has resistance that is effective against the predominant stripe rust races in the Sichuan region. Two resistant and two susceptible F8 lines from a cross between Milan and the susceptible variety Chuannong 16 were used to investigate inheritance of the Milan resistance. Three F2 populations were developed from crosses between the resistant lines and their susceptible sibling lines (LM168a × LM168c, LM168c × LM168a, LM168b × LM168d) and used for genetic analysis and molecular mapping of the genes for resistance. The stripe rust resistance in LM168a and LM168b was conferred by a single dominant gene, temporarily designated as YrLM168a. Forty-five extreme susceptible plants from the F2 families of LM168d × LM168b were genotyped with 836 simple sequence repeat (SSR) markers to map YrLM168a. YrLM168a was mapped in chromosome 6BL. The nearest flanking markers Xwmc756 and Xbarc146 were 4.6 and 4.6 cM away from the gene at both sides, respectively. The amplification results of twenty extreme resistant (IT 0) and susceptible (IT 4) F2 plants of LM168c × LM168a and LM168a × LM168c with marker Xwmc756 further validated the mapping results. The study suggested that extreme individuals and recessive phenotype class can be successfully used for mapping genes, which should be efficient and reliable. In addition, the flanking markers near YrLM168a should be helpful in marker-assisted breeding. PMID:26113523

  20. Characterization of the Wheat Stripe Rust (Puccinia striiformis f. sp. tritici) Fungal Effector Candidate PEC6 and Its Corresponding Host Targets

    DEFF Research Database (Denmark)

    Liu, Changhai

    HAn strain containing an engineered type-three secretion system. Results show that one of the effector candidates, PEC6, functions as a pattern-triggered immunity (PTI) suppressor in a host species-independent manner. A host-induced gene silencing (HIGS) study revealed PEC6 as an important pathogenicity...... factor. By using the yeast two-hybrid system, the adenosine kinase (ADK) was identified as a host target of PEC6. Virus-induced gene silencing (VIGS) of ADK enhanced wheat susceptibility to stripe rust indicates that ADK is a positive regulator in plant defense. Based on EtHAn-mediated effector delivery...

  1. Characterization of Stripe Rust Resistance Genes in the Wheat Cultivar Chuanmai45

    Science.gov (United States)

    Yang, Ennian; Li, Guangrong; Li, Liping; Zhang, Zhenyu; Yang, Wuyun; Peng, Yunliang; Zhu, Yongqing; Yang, Zujun; Rosewarne, Garry M.

    2016-01-01

    The objective of this research was to characterize the high level of resistance to stripe that has been observed in the released wheat cultivar, Chuanmai45. A combination of classic genetic analysis, molecular and cytogenetic methods were used to characterize resistance in an F2 population derived from Chuanmai45 and the susceptible Chuanmai42. Inheritance of resistance was shown to be conferred by two genes in Chuanmai45. Fluorescence in situ hybridization (FISH) was used along with segregation studies to show that one gene was located on a 1RS.1BL translocation. Molecular markers were employed to show that the other locus was located on chromosome 4B. The defeated gene, Yr24/26, on chromosome 1BL was present in the susceptible parent and lines that recombined this gene with the 1RS.1BL translocation were identified. The germplasm, loci, and associated markers identified in this study will be useful for application in breeding programs utilizing marker-assisted selection. PMID:27110767

  2. Genetics and molecular mapping of genes for race-specific all-stage resistance and non-race-specific high-temperature adult-plant resistance to stripe rust in spring wheat cultivar Alpowa.

    Science.gov (United States)

    Lin, F; Chen, X M

    2007-05-01

    Stripe rust, caused by Puccinia striiformis f. sp. tritici, is one of the most widespread and destructive wheat diseases worldwide. Growing resistant cultivars is the preferred control of the disease. The spring wheat cultivar 'Alpowa' has both race-specific, all-stage resistance and non-race-specific, high-temperature adult-plant (HTAP) resistances to stripe rust. To identify genes for the stripe rust resistances, Alpowa was crossed with 'Avocet Susceptible' (AVS). Seedlings of the parents, and F(1), F(2) and F(3) progeny were tested with races PST-1 and PST-21 of P. striiformis f. sp. tritici under controlled greenhouse conditions. Alpowa has a single partially dominant gene, designated as YrAlp, conferring all-stage resistance. Resistance gene analog polymorphism (RGAP) and simple sequence repeat (SSR) techniques were used to identify molecular markers linked to YrAlp. A linkage group of five RGAP markers and two SSR markers was constructed for YrAlp using 136 F(3) lines. Amplification of a set of nulli-tetrasomic Chinese Spring lines with RGAP markers Xwgp47 and Xwgp48 and the two SSR markers indicated that YrAlp is located on the short arm of chromosome 1B. To map quantitative trait loci (QTLs) for the non-race-specific HTAP resistance, the parents and 136 F(3) lines were tested at two sites near Pullman and one site near Mount Vernon, Washington, under naturally infected conditions. A major HTAP QTL was consistently detected across environments and was located on chromosome 7BL. Because of its chromosomal location and the non-race-specific nature of the HTAP resistance, this gene is different from previously described genes for adult-plant resistance, and is therefore designated Yr39. The gene contributed to 64.2% of the total variation of relative area under disease progress curve (AUDPC) data and 59.1% of the total variation of infection type data recorded at the heading-flowering stages. Two RGAP markers, Xwgp36 and Xwgp45 with the highest R (2) values

  3. Genome-Wide Analysis of Simple Sequence Repeats and Efficient Development of Polymorphic SSR Markers Based on Whole Genome Re-Sequencing of Multiple Isolates of the Wheat Stripe Rust Fungus.

    Directory of Open Access Journals (Sweden)

    Huaiyong Luo

    Full Text Available The biotrophic parasitic fungus Puccinia striiformis f. sp. tritici (Pst causes stripe rust, a devastating disease of wheat, endangering global food security. Because the Pst population is highly dynamic, it is difficult to develop wheat cultivars with durable and highly effective resistance. Simple sequence repeats (SSRs are widely used as molecular markers in genetic studies to determine population structure in many organisms. However, only a small number of SSR markers have been developed for Pst. In this study, a total of 4,792 SSR loci were identified using the whole genome sequences of six isolates from different regions of the world, with a marker density of one SSR per 22.95 kb. The majority of the SSRs were di- and tri-nucleotide repeats. A database containing 1,113 SSR markers were established. Through in silico comparison, the previously reported SSR markers were found mainly in exons, whereas the SSR markers in the database were mostly in intergenic regions. Furthermore, 105 polymorphic SSR markers were confirmed in silico by their identical positions and nucleotide variations with INDELs identified among the six isolates. When 104 in silico polymorphic SSR markers were used to genotype 21 Pst isolates, 84 produced the target bands, and 82 of them were polymorphic and revealed the genetic relationships among the isolates. The results show that whole genome re-sequencing of multiple isolates provides an ideal resource for developing SSR markers, and the newly developed SSR markers are useful for genetic and population studies of the wheat stripe rust fungus.

  4. Resistance in Salix against willow leaf rust caused by Melampsora epitea

    Energy Technology Data Exchange (ETDEWEB)

    Johansson, Leif [Swedish Univ. of Agricultural Sciences, Uppsala (Sweden). Dept. of Ecology and Crop Production Science

    2000-07-01

    Cultivation of Salix in short rotation forests (SRF), as a source of renewable energy is a relatively recent phenomenon in Sweden. As all other crops under intensive cultivation, Salix are attacked by pests. The economically most important disease is leaf rust caused by Melampsora epitea. For successful plant breeding of new sustainable rust resistant clones, it is important to have knowledge of the inheritance of resistance and the mechanisms underlying rust resistance. Species hybridisation is one technique used in plant breeding, hence the inheritance pattern of rust resistance in hybrids of two species, S. viminalis and S. dasyclados, selected for the purpose, was studied in greenhouse as well as under field conditions. The study in greenhouse showed that hybrids acquire intermediate rust resistance compared to pure species. Plants of same hybrids in field proved to be more resistant than their parental species. Observations in field also showed that abiotic factors such as weather tend to play a significant role in expression of inheritance pattern. It was further indicated that the interaction between rust and Salix might be race-specific. Metabolic changes in Salix, induced by the pathogen in incompatible and compatible interactions were studied in terms of peroxidase and chitinase activity which were measured in S. viminalis inoculated with rust of two different pathotypes of M. epitea rust. Peroxidase activity revealed an earlier response from plants in the incompatible interactions compared to compatible interactions. Records of the chitinase accumulation showed absence of one basic isoform of chitinase in the incompatible interaction. These results demonstrated physiological differences between incompatible and compatible interactions, and gave further indication toward occurrence of race-specific interactions in this pathosystem. Further, with use of molecular biology techniques, a gene designated svpk1, was cloned and partially characterised. The gene

  5. Quantitative trait loci for non-race-specific, high-temperature adult-plant resistance to stripe rust in wheat cultivar Express.

    Science.gov (United States)

    Lin, F; Chen, X M

    2009-02-01

    Wheat cultivar Express has durable, high-temperature adult-plant (HTAP) resistance to stripe rust (Puccinia striiformis f. sp. tritici). To elucidate the genetic basis of the resistance, Express was crossed with 'Avocet Susceptible' (AVS). A mapping population of 146 F(5) recombinant inbred lines (RILs) was developed using single-seed descent. The RILs were evaluated at two sites near Pullman in eastern Washington and one site near Mount Vernon in western Washington in 2005, and were evaluated near Pullman in 2006 under natural stripe rust infection of predominant races virulent on seedlings of Express. Infection type (IT) and disease severity (DS) were recorded three times for each line during each growing season. The DS data were used to calculate relative area under the disease progress curve (rAUDPC) values. Both IT and rAUDPC data showed continuous distributions, indicating that the Express HTAP resistance was controlled by quantitative trait loci (QTL). Resistance gene analog polymorphism (RGAP) and simple sequence repeat (SSR) techniques were used to map the HTAP resistance QTL. Three QTL were detected with significant additive effects, explaining 49.5-69.6% of the phenotypic variation for rAUDPC. Two of the QTL explained 30.8-42.7% of the phenotypic variation for IT. The three QTL were mapped to wheat chromosomes 6AS, 3BL and 1BL, and were designated as QYrex.wgp-6AS, QYrex.wgp-3BL and QYrex.wgp-1BL, respectively. QYrex.wgp-6AS and QYrex.wgp-3BL, which had higher effects than QYrex.wgp-1BL, were different from previously reported QTL/genes for adult-plant resistance. Markers Xgwm334-Xwgp56 and Xgwm299-Xwgp66 flanking the two major QTL were highly polymorphic in various wheat genotypes, suggesting that these markers are useful in marker-assisted selection. PMID:18815766

  6. Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust.

    Directory of Open Access Journals (Sweden)

    Dario Cantu

    Full Text Available BACKGROUND: The wheat stripe rust fungus (Puccinia striiformis f. sp. tritici, PST is responsible for significant yield losses in wheat production worldwide. In spite of its economic importance, the PST genomic sequence is not currently available. Fortunately Next Generation Sequencing (NGS has radically improved sequencing speed and efficiency with a great reduction in costs compared to traditional sequencing technologies. We used Illumina sequencing to rapidly access the genomic sequence of the highly virulent PST race 130 (PST-130. METHODOLOGY/PRINCIPAL FINDINGS: We obtained nearly 80 million high quality paired-end reads (>50x coverage that were assembled into 29,178 contigs (64.8 Mb, which provide an estimated coverage of at least 88% of the PST genes and are available through GenBank. Extensive micro-synteny with the Puccinia graminis f. sp. tritici (PGTG genome and high sequence similarity with annotated PGTG genes support the quality of the PST-130 contigs. We characterized the transposable elements present in the PST-130 contigs and using an ab initio gene prediction program we identified and tentatively annotated 22,815 putative coding sequences. We provide examples on the use of comparative approaches to improve gene annotation for both PST and PGTG and to identify candidate effectors. Finally, the assembled contigs provided an inventory of PST repetitive elements, which were annotated and deposited in Repbase. CONCLUSIONS/SIGNIFICANCE: The assembly of the PST-130 genome and the predicted proteins provide useful resources to rapidly identify and clone PST genes and their regulatory regions. Although the automatic gene prediction has limitations, we show that a comparative genomics approach using multiple rust species can greatly improve the quality of gene annotation in these species. The PST-130 sequence will also be useful for comparative studies within PST as more races are sequenced. This study illustrates the power of NGS for

  7. Genetic Analysis and Molecular Mapping of an All-Stage Stripe Rust Resistance Gene inTriticum aestivum-Haynaldia villosa Translocation Line V3

    Institute of Scientific and Technical Information of China (English)

    HOU Lu; MA Dong-fang; HU Mao-lin; HE Miao-miao; LU Yan; JING Jin-xue

    2013-01-01

    chromosomal location, the reaction patterns and pedigree analysis,YrV3should be a novel gene for resistance to stripe rust in wheat. These closely linked markers should be useful in stacking genes from different sources for wheat breeding and diversiifcation of resistance genes against stripe rust.

  8. Aster albescens Rust Caused by Aecidium asterum and Its Hyperparasitic Fungus Tuberculina persicina

    Institute of Scientific and Technical Information of China (English)

    HUANG Yun; YE Hua-zhi; CHEN Guang-yan; LIU Zi-ying; DONG Bao-chen

    2005-01-01

    Aster albescens is a medicinal plant. The rust caused by Aecidium asterum is a new record in China and an important disease of A. albescens in Feng Tong-zhai national reservation area. The percentages of diseased plant and the diseased leaf reach 100 and 28% respectively when the disease is serious. The disease results in leaf spot and leaf cast. Tuberculina persicina is a natural hyperparasite of A. asterum and is firstly reported in the world. The hyperparasite attacks aecium of A. asterum and hinderes the release of aeciospores. The symptom of the rust and the morphological characteristics of A.asterum is reported. The hyperparasitism of A. asterum and the morphological characteristics of the Tuberculina persicina are also reported.

  9. DIVERSITY OF PUCCINIA KUEHNII AND P. MELANOCEPHALA CAUSING RUST DISEASES ON BRAZILIAN SUGARCANE

    Science.gov (United States)

    Sugarcane industry in Brazil suffers yield loss due to brown rust (Puccinia melanocephala) since 1986 and orange rust (P. kuehnii) as recent as 2009. The main control measure for both diseases has been cultivar resistance. Nevertheless, recent onsets of orange rust on previously resistant cultivars ...

  10. 临麦系列春小麦品种抗条锈性分析%Resistance analysis on spring wheat cultivar of Linmai lines to stripe rust in Linxia,Gansu Province

    Institute of Scientific and Technical Information of China (English)

    李永平; 曹世勤; 金社林; 冯晶; 谭璀榕

    2016-01-01

    Wheat stripe rust (yellow rust),caused by Puccinia striiformis f.sp.tritici (Pst ),is one of the most destructive disease in wheat in Linxia,Gansu Province of China.Growing resistant cultivars is the most economi-cal,environmental friendly,and effective method to control stripe rust of wheat.Five planting spring wheat culti-vars,including ‘Linmai 32’,‘Linmai 33’,‘Linmai 34’,‘Linmai 35’and ‘Linmai 36’,which were important wheat varieties in Linxia region since 2000,were selected to evaluate their resistance to stripe rust at all-stage time by artificially inoculating differential races of Pst in Lanzhou greenhouse of Institute of Plant Protection,Gansu Academy of Agricultural Sciences (IPP-GAAS)at seedling stage,and Gangu Testing Station of IPP-GAAS at adult stage in 2013,and natural induced pool at 8 different location in Gansu Province during 2010-2014.The results showed that the wheat varieties ‘Linmai 32’were susceptible to the tested isolates of Pst at seedling stage,middle resistant-susceptible to CYR29 and CYR32,and susceptible to other isolates of Pst at adult stage.The wheat vari-ety ‘Linmai 33’was immune to CYR29 at seedling stage,middle resistant-susceptible at adult stage,and suscepti-ble to other tested isolates of Pst at all stage,and susceptible to natural isolates at 8 different locations in Gansu Province,China.The wheat varieties ‘Linmai 34’and ‘Linmai 36’were susceptible to G22-9,G22-14,and re-sistant to other isolates.They were also susceptible in field since 2013.The wheat variety ‘Linmai 35’was resist-ant to the testing and natural isolates of Pst in all-stage.Artificial inoculation of 24 single isolates of Pst with dif-ferent spectra of pathogenicity was carried out at seedling stage in Beijing greenhouse (Institute of Plant Protec-tion,Chinese Academy of Agricultural Sciences,IPP-CAAS).The results showed that the resistant spectra of the tested Linmai spring varieties were different from that of the

  11. A new rust disease on wild coffee (Psychotria nervosa) caused by Puccinia mysuruensis sp. nov

    Science.gov (United States)

    Psychotria nervosa, commonly called wild coffee (Rubiaceae) is an important ethno-medicinal plant in India. In 2010 a new rust disease of P. nervosa was observed in three regions of Mysore District, Karnataka (India) with disease incidence ranging from 58% to 63%. Typical symptoms of rust disease we...

  12. Development of structural response diagram approach to evaluation of thermal stress caused by thermal striping

    Energy Technology Data Exchange (ETDEWEB)

    Kasahara, Naoto; Yacumpai, Apisara [Japan Nuclear Cycle Development Inst., Oarai, Ibaraki (Japan). Oarai Engineering Center; Takasho, Hideki

    1999-02-01

    At incomplete mixing area of high temperature and low temperature fluids near the surface of structures, temperature fluctuation of fluid gives thermal fatigue damage to wall structures. This thermohydraulic and thermomechanical coupled phenomenon is called thermal striping, which has so complex mechanism and sometimes causes crack initiation on the structural surfaces that rational evaluation methods are required for screening rules in design codes. In this study, frequency response characteristics of structures and its mechanism were investigated by both numerical and theoretical methods. Based on above investigation, a structural response diagram was derived, which can predict stress amplitude of structures from temperature amplitude and frequency of fluids. Furthermore, this diagram was generalized to be the Non-dimensional structural response diagram by introducing non-dimensional parameters such as Biot number, non-dimensional frequency, and non-dimensional stress. The use of the Non-dimensional structural response diagram appears to evaluate thermal stress caused by thermal striping, rapidly without structural analysis, and rationally with considering attenuation by non-stationary heat transfer and thermal unloading. This diagram can also give such useful information as sensitive frequency range to adjust coupled thermohydraulic and thermomechanical analysis models taking account of four kinds of attenuation factors: turbulent mixing, molecular diffusion, non-stationary heat transfer, and thermal unloading. (author)

  13. The genome sequence and effector complement of the flax rust pathogen Melampsora lini

    Directory of Open Access Journals (Sweden)

    Adnane eNemri

    2014-03-01

    Full Text Available Rust fungi cause serious yield reductions on crops, including wheat, barley, soybean, coffee, and represent real threats to global food security. Of these fungi, the flax rust pathogen Melampsora lini has been developed extensively over the past 80 years as a model to understand the molecular mechanisms that underpin pathogenesis. During infection, M. lini secretes virulence effectors to promote disease. The number of these effectors, their function and their degree of conservation across rust fungal species is unknown. To assess this, we sequenced and assembled de novo the genome of M. lini isolate CH5 into 21,130 scaffolds spanning 189 Mbp (scaffold N50 of 31 kbp. Global analysis of the DNA sequence revealed that repetitive elements, primarily retrotransposons, make up at least 45% of the genome. Using ab initio predictions, transcriptome data and homology searches, we identified 16,271 putative protein-coding genes. An analysis pipeline was then implemented to predict the effector complement of M. lini and compare it to that of the poplar rust, wheat stem rust and wheat stripe rust pathogens to identify conserved and species-specific effector candidates. Previous knowledge of four cloned M. lini avirulence effector proteins and two basidiomycete effectors was used to optimise parameters of the effector prediction pipeline. Markov clustering based on sequence similarity was performed to group effector candidates from all four rust pathogens. Clusters containing at least one member from M. lini were further analysed and prioritized based on features including expression in isolated haustoria and infected leaf tissue and conservation across rust species. Herein, we describe 200 of 940 clusters that ranked highest on our priority list, representing 725 flax rust candidate effectors. Our findings on this important model rust species provide insight into how effectors of rust fungi are conserved across species and how they may act to promote

  14. First report of Orange Rust of Sugarcane Caused by Puccinia kuehnii in Costa Rica and Nicaragua

    Science.gov (United States)

    Symptoms of orange rust of sugarcane were observed in Costa Rica at Coopeagri Sugar Mill located in Pérez Zeledón, San José, during July 2007 on (a complex hybrid of Saccharum L. species) cultivar, SP 71-5574, and at Providencia Sugar Mill near Muelle and at Cutris Sugar Mill near Los Chiles, in Aug...

  15. First Report of Garlic Rust Caused by Puccinia allii on Allium sativum in Minnesota

    Science.gov (United States)

    In July 2010, Allium sativum, cultivar German Extra Hardy Porcelain plants showing foliar symptoms typical of rust infection were brought to the Plant Disease Clinic at the University of Minnesota by a commercial grower from Fillmore county Minnesota. Infected leaves showed circular to oblong lesio...

  16. MOLECULAR SCREENING OF LEAF RUST AND STRIP RUST RESISTANCE GENES IN F5 BREAD WHEAT IN EGYPT

    OpenAIRE

    Reham M. Abd El-Azeem; S. H. M. Abd-El-Haleem

    2014-01-01

    Highly wheat production in Egypt is constrained due to many diseases. Rust and stripe (yellow) rust diseases consider from the most important wheat diseases in Egypt. Thus, molecular screening of genetically resistant cultivars, varieties, accessions and hybrids offspring through many generations, is one of the most sustainable solutions to overcome these diseases. The objective of this study is screening strip (yellow) rust and leaf rust resistance genes in the three parents ...

  17. Disease Index Inversion of Wheat Stripe Rust on Different Wheat Varieties with Hyperspectral Remote Sensing%基于高光谱遥感技术的不同小麦品种条锈病病情指数的反演

    Institute of Scientific and Technical Information of China (English)

    郭洁滨; 黄冲; 王海光; 孙振宇; 马占鸿

    2009-01-01

    应用混合品种控制小麦条锈病在国内外日益受到重视,通过采集田间不同品种混合小麦条锈病各级病情梯度的高光谱遥感数据,将光谱数据与条锈病病情数据进行相关性分析,利用4个光谱参数构建其与病情指数的同归模型.结果表明,不同小麦晶种组合在不同的病情指数情况下,其冠层光谱信息都表现了一致的变化规律;冠层反射率在可见光区与病情指数为正相关,而在近红外区则达到了显著的负相关;利用690与850 nm处的反射率、SDr、NDVI以及RVI与病情指数构建的回归模型拟合效果较好.研究表明利用高光谱反演条锈病病情指数是可行的,并且小麦不同品种对反演效果影响小大.%It is becoming more and more important to use mixed wheat varieties to control wheat stripe rust. Different wheat va-rieties were planted in field and stripe rust was caused by artificial inoculation. Disease index (DI) was assessed and the canopy reflection data of wheat canopy were obtained by ASD FieldSpec HandHeld FR(325-1 075 nm) made by ASD Company. The correlation analysis between DI and spectral data (reflectance and the first derivative) was conducted, and the estimation models between DI and reflection data (reflectance at 690 and 850 nm, SDr, NDVI and RVI) were built using linear regression method. The results showed that different combinations of wheat varieties had the similar variation at different disease index. DI has posi-tive correlation with reflectance of wheat canopy in visible region, and has significant negative correlation in the near infrared re-gion. DI has stable negative correlation with the first derivative in the region of 700-760 nm and with big fluctuation in other re-gions. The correlation was compared between DI and hyperspectral derivative index, and SDr has the best correlation with DI. DI estimation models were built based on the canopy reflectance at 690 and 850 nm, SDr, NDVI and RVI. The

  18. Detection of Puccinia kuehnii Causing Sugarcane Orange Rust with a Loop-Mediated Isothermal Amplification-Based Assay.

    Science.gov (United States)

    Chandra, Amaresh; Keizerweerd, Amber T; Grisham, Michael P

    2016-03-01

    Puccinia kuehnii is a fungal pathogen that causes orange rust in sugarcane, which is now prevalent in many countries. At the early stage of disease, it is almost indistinguishable from brown rust, which is caused by Puccinia melanocephala. Although several PCR assays are available to detect these diseases, the loop-mediated isothermal amplification (LAMP)-based assay has been reported to be more economical and easier to perform. Under isothermal conditions, DNA is amplified with high specificity and rapidity. Moreover, visual judgment of color change without further post-amplification processing makes the method convenient. The present study was undertaken to detect P. kuehnii genomic DNA using four primers corresponding to a unique DNA sequence of P. kuehnii. The LAMP assay was found to be optimal when 8 mM MgSO4 was used and the reaction was incubated at 63 °C for 90 min. Positive samples showed a color change from orange to green upon SYBR Green I dye addition. Specificity of the LAMP test was checked with DNA of P. melanocephala, which showed no reaction. Sensitivity of the LAMP method was observed to be the same as real-time PCR at 0.1 ng, thus providing a rapid and more affordable option for early disease detection. PMID:26837389

  19. Molecular Cytogenetic Characterization of Secale Africanum Introgression Wheat Lines for Resistance to Stripe Rust%抗条锈小麦-非洲黑麦渐渗系的分子细胞学鉴定

    Institute of Scientific and Technical Information of China (English)

    贾举庆; 郭红媛; 李倩冉; 董娟; 杨武德; 杨足君

    2012-01-01

    Secale africanum shows short plant height, cross pollination and excellent resistance to wheat diseases. It is thus essential to study its potential value for wheat improvement. In this study, molecular cytogenetic methods were used to evaluate Secale africanum introgression wheat lines and materials for developing stripe rust resistance substitution and translocation lines were found, which offered good genetic stocks for further utilizing the S. africaum chro-matin in the wheat breeding by chromosome manipulation.%非洲黑麦(Secale a fricanum Stapf)具有矮杆、异花授粉、抗多种小麦病害等优异性状,在小麦可持续性抗病遗传育种中具有重要作用.利用分子细胞生物学的方法对小麦与非洲黑麦育成的渐渗系材料进行鉴定,发现了抗条锈病的新的代换系和易位系材料,为进一步在小麦染色体工程育种中开展非洲黑麦基因资源的利用提供很好的遗传材料.

  20. Glyphosate inhibits rust diseases in glyphosate-resistant wheat and soybean

    OpenAIRE

    Feng, Paul C. C.; Baley, G. James; Clinton, William P.; Bunkers, Greg J.; Alibhai, Murtaza F.; Paulitz, Timothy C.; Kidwell, Kimberlee K.

    2005-01-01

    Glyphosate is a broad-spectrum herbicide used for the control of weeds in glyphosate-resistant crops. Glyphosate inhibits 5-enolpyruvyl shikimate 3-phosphate synthase, a key enzyme in the synthesis of aromatic amino acids in plants, fungi, and bacteria. Studies with glyphosate-resistant wheat have shown that glyphosate provided both preventive and curative activities against Puccinia striiformis f. sp. tritici and Puccinia triticina, which cause stripe and leaf rusts, respectively, in wheat. ...

  1. Determination of rust resistance genes in pakistani bread wheats

    International Nuclear Information System (INIS)

    Stripe and leaf rusts are the major constraints to bread wheat production in Pakistan. Molecular markers were used to investigate the presence of leaf rust and stripe rust resistance gene cluster Lr34/Yr18 and stem rust resistance gene Sr2 in 52 Pakistani bread wheat cultivars/lines. PCR amplification of DNA fragments using DNA marker csLV-34 showed that 13 of the studied cultivars/lines, namely 03FJ26, NR 337, NR 339, NR 347, NR 350, Manthar, Margalla 99, Iqbal 2000, Saleem 2000, Wafaq 2001, Marwat 2001, Pirsabak 2004 and Fareed 2006 carry leaf rust and stripe rust resistance genes Lr34/Yr18. Stem rust resistance gene Sr2 was observed in 36 Pakistani spring wheat cultivars/lines using stm560.3tgag marker. The slow rusting gene Sr2 needs to be combined with additional stem rust resistance genes to establish durable resistance against Ug99 in modern wheat cultivars. Low frequency of Lr34/Yr18 was found in Pakistani wheats. This gene cluster needs to be incorporated into Pakistani wheats for durable rust resistance. (author)

  2. 基于高光谱影像的小麦条锈病光谱信息探测与提取%Spectral Information Detection and Extraction of Wheat Stripe Rust Based on Hyperspectral Image

    Institute of Scientific and Technical Information of China (English)

    杨可明; 陈云浩; 郭达志; 蒋金豹

    2008-01-01

    为了理解与定量分析农作物光谱特征和相关参数,基于PHI高光谱影像建立了农作物病害光谱响应与探测模型,即光谱点位与参数模型(FPPM).为了识别和提取小麦条锈病信息,根据多时相高光谱影像光谱特征,提出了一种可调节的多时相归一化植被指数(MT-NDVI).结果表明,FPPM能很好地响应与感知该病害在小麦生长期的光谱特征;结合光谱角制图法(SAM),MT-NDVI能清楚地呈现不同区域该病害的轻重程度,准确地区分和提取小麦条锈病与健康小麦及土壤的信息.%In order to analyze and detect wheat stripe rust disease quantitatively, a Feature Position and Parameter Mode (FPPM) of spectral responses and disease detection is built based on the airborne wheat PHI(Pushbroom hyperspectral imager) images, and a new adjustable Multi-Temporal Normalized Difference Vegetation Index (MT-NDVI) is provided to extract the disease information in terms of the temporal spectral features. The results show that the FPPM can well response and monitor the disease occurring during the wheat growing, and the MT-NDVI method integrating Spectral Angle Mapper(SAM) technique can represent clearly the disease where is serious, slight or not influential, distinguish and extract the disease information accurately from health wheat and soil.

  3. Over-summering of wheat stripe rust (Puccinia striiformis f.sp. tritici) in the California Central valley: A case study Supervivencia estival de la roya estriada (Puccinia striiformis f.sp. tritici) del trigo en el Valle Central de California: Estudio de caso

    OpenAIRE

    Huib Tollenaar

    2012-01-01

    To study the over-summering of wheat stripe rust (Puccinia striiformis f.sp. tritici) in the California Central Valley (CCV), temperature records from various locations in the CCV during the period 1950-2009 were examined for the occurrence of lethal maximum temperatures for the uredinia and uredinio-mycelium of this fungus. The lethal upper threshold temperature for the uredinial stage of P.s. tritici, estimated to be 40.5 °C on the basis of data published elsewhere, and the sum, accumulated...

  4. Resistance Potential of Bread Wheat Genotypes Against Yellow Rust Disease Under Egyptian Climate

    Directory of Open Access Journals (Sweden)

    Amer F. Mahmoud

    2015-12-01

    Full Text Available Yellow rust (stripe rust, caused by Puccinia striiformis f. sp. tritici, is one of the most destructive foliar diseases of wheat in Egypt and worldwide. In order to identify wheat genotypes resistant to yellow rust and develop molecular markers associated with the resistance, fifty F₈ recombinant inbred lines (RILs derived from a cross between resistant and susceptible bread wheat landraces were obtained. Artificial infection of Puccinia striiformis was performed under greenhouse conditions during two growing seasons and relative resistance index (RRI was calculated. Two Egyptian bread wheat cultivars i.e. Giza-168 (resistant and Sakha-69 (susceptible were also evaluated. RRI values of two-year trial showed that 10 RILs responded with RRI value >6 2 <6. However, only 7 RILs showed RRI value <2. Five RILs expressed hypersensitive type of resistance (R against the pathogen and showed the lowest Average Coefficient of Infection (ACI. Bulked segregant analysis (BSA with eight simple sequence repeat (SSR, eight sequence-related amplified polymorphism (SRAP and sixteen random amplified polymorphic DNA (RAPD markers revealed that three SSR, three SRAP and six RAPD markers were found to be associated with the resistance to yellow rust. However, further molecular analyses would be performed to confirm markers associated with the resistance and suitable for marker-assisted selection. Resistant RILs identified in the study could be efficiently used to improve the resistance to yellow rust in wheat.

  5. Sources of resistance to yellow rust and stem rust in wheat-alien introgressions

    OpenAIRE

    Rahmatov, Mahbubjon

    2013-01-01

    Wheat is the staple food and the main source of caloric intake in most developing countries, and thereby an important source in order to maintain food security for the growing populations in those countries. Stem rust Puccinia graminis f. sp. tritici, and yellow rust P. striiformis f. sp. tritici of wheat continues to cause severe damage locally and globally, thereby contributing to food insecurity. In this paper biology and taxonomy of stem rust and yellow rust, breeding for resistance, util...

  6. Phenotypic and Genotypic Characterization of Race TKTTF of Puccinia graminis f. sp. tritici that Caused a Wheat Stem Rust Epidemic in Southern Ethiopia in 2013-14.

    Science.gov (United States)

    Olivera, Pablo; Newcomb, Maria; Szabo, Les J; Rouse, Matthew; Johnson, Jerry; Gale, Samuel; Luster, Douglas G; Hodson, David; Cox, James A; Burgin, Laura; Hort, Matt; Gilligan, Christopher A; Patpour, Mehran; Justesen, Annemarie F; Hovmøller, Mogens S; Woldeab, Getaneh; Hailu, Endale; Hundie, Bekele; Tadesse, Kebede; Pumphrey, Michael; Singh, Ravi P; Jin, Yue

    2015-07-01

    A severe stem rust epidemic occurred in southern Ethiopia during November 2013 to January 2014, with yield losses close to 100% on the most widely grown wheat cultivar, 'Digalu'. Sixty-four stem rust samples collected from the regions were analyzed. A meteorological model for airborne spore dispersal was used to identify which regions were most likely to have been infected from postulated sites of initial infection. Based on the analyses of 106 single-pustule isolates derived from these samples, four races of Puccinia graminis f. sp. tritici were identified: TKTTF, TTKSK, RRTTF, and JRCQC. Race TKTTF was found to be the primary cause of the epidemic in the southeastern zones of Bale and Arsi. Isolates of race TKTTF were first identified in samples collected in early October 2013 from West Arsi. It was the sole or predominant race in 31 samples collected from Bale and Arsi zones after the stem rust epidemic was established. Race TTKSK was recovered from 15 samples from Bale and Arsi zones at low frequencies. Genotyping indicated that isolates of race TKTTF belongs to a genetic lineage that is different from the Ug99 race group and is composed of two distinct genetic types. Results from evaluation of selected germplasm indicated that some cultivars and breeding lines resistant to the Ug99 race group are susceptible to race TKTTF. Appearance of race TKTTF and the ensuing epidemic underlines the continuing threats and challenges posed by stem rust not only in East Africa but also to wider-scale wheat production. PMID:25775107

  7. Rust essentials

    CERN Document Server

    Balbaert, Ivo

    2015-01-01

    This book is intended for software developers interested in systems level and application programming, and are looking for a quick entry into using Rust and understanding the core features of the framework. It is assumed that you have a basic understanding of Java, C#, Ruby, Python or JavaScript.

  8. 冬小麦品种‘兰天23号’苗期抗条锈性遗传分析%Inheritance of resistance of wheat variety ‘Lantian 23’ against stripe rust at seedling stage

    Institute of Scientific and Technical Information of China (English)

    黄苗苗; 金社林; 李亚凯; 黄瑾; 贾秋珍; 孙振宇; 张勃; 王晓明; 王万军; 曹世勤

    2015-01-01

    2014年在甘肃省农业科学院植物保护研究所兰州温室,进行了‘兰天23号’/‘铭贤169’组合的亲本及其F1、F2、BC1代对条锈菌主要流行小种 CYR32、CYR33及新菌系 G22-9的遗传分析。结果表明,接种 CYR33,F2代植株抗感分离比为144R∶54S,符合3R∶1S 的理论比值;接种 CYR32,F2代植株抗感分离比为62R∶22S,符合3R∶1S的理论比值;接种 G22-9,F2代植株抗感分离比为85R∶24S,符合3R∶1S 的理论比值;F1代植株对供试菌系均表现免疫,BC1代植株抗感分离比均符合1R∶1S 的理论比值,表明‘兰天23号’对3个供试条锈菌系的抗病性均由1对显性抗性基因控制。通过系谱分析推知,该抗病基因来源于抗病亲本‘SXAF4-7’。%The winter wheat variety ‘Lantian 23’is an important cultivar in Gansu Province,China.It was used as male parent and hybridized with the susceptible cultivar ‘Mingxian 1 69’at Gangu Testing Station,Institute of Plant Protection,Gansu Academy of Agricultural Sciences (IPP,GAAS).To study the resistant inheritance of wheat variety ‘Lantian 23’to stripe rust at seedling stage,the P1 ,P2 ,F1 ,F2 and BC1 populations of the crosses with susceptible variety ‘Mingxian 1 69’were inoculated in Lanzhou greenhouses in IPP of GAAS with three races (isolates)of Puccinia striiformis f.sp.tritici ,including CYR33,CYR32,and G22-9.The results showed that the segregation ratio for the cross of ‘Lantian 23 ’and ‘Mingxian 1 69 ’was 144∶54 in F2 plants when tested with CYR33,which was accorded with the expected value for 3R∶1S by Chi-square (χ2 )testing for probability of goodness fit.When tested with CYR32 and G22-9,the segregation ratio for the cross of ‘Lantian 23 ’and‘Mingxian 1 69’were 62∶22 and 85∶24,also accorded with the expected value for 3R∶1S by Chi-square (χ2 )tes-ting for probability of goodness fit.When tested with CYR33,CYR32,and G22-9,F1 populations were immune, and BC1

  9. Genetic analysis and molecular mapping of stripe rust resistance gene in a restore line of Thermo-Photo sensitive hybrid wheat MR168%两系杂交小麦恢复系MR168抗条锈病基因遗传分析及分子标记定位

    Institute of Scientific and Technical Information of China (English)

    任勇; 李生荣; 李俊; 周强; 杜小英; 李太军; 杨武云; 郑有良

    2011-01-01

    小麦条锈病是影响杂交小麦普及推广的重要因素.文章利用基因推导法和SSR分子标记技术,研究了温光型两系杂交小麦恢复系MR168的抗条锈性遗传规律及其控制基因染色体位置.结果表明,MR168对CY29、CY31、CY32、CY33等条锈菌生理小种表现高抗至免疫;对SY95-71/MR168杂交组合的正反交F1、BC1、F2和F3群体分单株接种鉴定显示,MR168对CY32号小种的抗性受1对显性核基因控制,该抗病基因来源于春小麦品种辽春10号.利用集群分离分析法(Bulked segregant analysis,BSA)和简单重复序列(Simple sequence repeat,SSR)分子标记分析抗病亲本MR168、感病亲本SY95-71及183个F2代单株,发现了与MR168抗条锈病基因连锁的5个微卫星标记Xgwm273、Xgwm18、Xbarc187、Xwmc269、Xwmc406,并将该基因初步定位在1BS着丝粒附近,暂命名为YrMR168;构建了包含YrMR168的SSR标记遗传图谱,距离YrMR168最近的两个微卫星位点是Xgwm18和Xbarc18 7,遗传距离分别为1.9 cM和2.4 cM,这两个微卫星标记可用于杂交小麦抗条锈病分子标记辅助育种.%Stripe rust, caused by Puccinia striiformis f. Sp. Tritici, is an important limiting factor to popularize hybrid wheat. The objectives of this study were to map a stripe rust resistance gene in a Chinese thermo-photo-sensitive hybrid wheat restore line MR168 using gene postulation and SSR markers. MR168 was highly resistant to 23 Pst races including CYR29, CYR31, CYR32, and CYR33. The populations F1, BC1, F2, and F3 from the cross between MR168 and SY95-71 (a wheat cultivar susceptible to Pst races) were inoculated with the race of Pst CYR32 of China in greenhouse. MR168 carried a single dominant gene for resistance to CYR32, tentatively designated YrMR168. It originated from Liaochun 10, a spring wheat variety. A total of 183 F2 plants, the resistant and susceptible parents and resistant and susceptible bulks were used for resistance gene mapping with 329 pairs of

  10. Stripe pattern in the intensity profile of collimated soft x-ray beams caused by surface corrugation of the refocusing mirrors

    Energy Technology Data Exchange (ETDEWEB)

    Schmitz, D., E-mail: schmitz@helmholtz-berlin.de; Siewert, F.; Zeschke, T.

    2015-02-21

    The effect of progress in surface finishing of optical components on the collimated-beam properties of soft x-ray beamlines at synchrotron radiation facilities is demonstrated: a stripe pattern, experimentally observed in the 2D intensity profile of beamlines with optical components manufactured 10–15 years ago, would be strongly attenuated if the existing refocusing mirror was replaced by an ultra-precise mirror manufactured with state-of-the-art of today surface finishing techniques. The observed stripe pattern is not caused by diffraction because its period length did not change with photon energy. Instead it can be explained with geometrical optics and is due to the height profile of the refocusing mirror which has been independently measured with a long trace profiler and used as an input in our raytracing simulations.

  11. Stripe pattern in the intensity profile of collimated soft x-ray beams caused by surface corrugation of the refocusing mirrors

    International Nuclear Information System (INIS)

    The effect of progress in surface finishing of optical components on the collimated-beam properties of soft x-ray beamlines at synchrotron radiation facilities is demonstrated: a stripe pattern, experimentally observed in the 2D intensity profile of beamlines with optical components manufactured 10–15 years ago, would be strongly attenuated if the existing refocusing mirror was replaced by an ultra-precise mirror manufactured with state-of-the-art of today surface finishing techniques. The observed stripe pattern is not caused by diffraction because its period length did not change with photon energy. Instead it can be explained with geometrical optics and is due to the height profile of the refocusing mirror which has been independently measured with a long trace profiler and used as an input in our raytracing simulations

  12. Stripe pattern in the intensity profile of collimated soft x-ray beams caused by surface corrugation of the refocusing mirrors

    Science.gov (United States)

    Schmitz, D.; Siewert, F.; Zeschke, T.

    2015-02-01

    The effect of progress in surface finishing of optical components on the collimated-beam properties of soft x-ray beamlines at synchrotron radiation facilities is demonstrated: a stripe pattern, experimentally observed in the 2D intensity profile of beamlines with optical components manufactured 10-15 years ago, would be strongly attenuated if the existing refocusing mirror was replaced by an ultra-precise mirror manufactured with state-of-the-art of today surface finishing techniques. The observed stripe pattern is not caused by diffraction because its period length did not change with photon energy. Instead it can be explained with geometrical optics and is due to the height profile of the refocusing mirror which has been independently measured with a long trace profiler and used as an input in our raytracing simulations.

  13. 小麦新抗源CH7103抗条锈基因的遗传及其与已知基因的关系%Inheritance of Stripe Rust Resistance Gene in Wheat Line CH7103 Introgressed from Thinopyrum ponticum and Its Allelism with Known Genes

    Institute of Scientific and Technical Information of China (English)

    白云; 李欣; 张丛卓; 张晓军; 詹海仙; 畅志坚

    2011-01-01

    为了更好地利用小麦条锈病新抗源,以衍生于八倍体小偃麦"小偃7430"的新抗源CH7103为材料,对其抗条锈性及抗病基因的来源、遗传模式和细胞学特征及其与已知抗病基因的关系进行了分析和鉴定.结果表明,CH7103苗期和成株期对条锈菌系条中31、32号生理小种表现免疫或近免疫,与其抗性供体小偃7430及其野生亲本的抗病侵染型相似,而其小麦亲本均感病,说明CH7103对条锈病的抗性来自彭提卡偃麦草.抗×感的F1代均表现免疫,侵染型为0~0;级,且F2、F2∶3、BC1代的抗、感分离比均符合显性单基因控制的分离模式.通过等住性检测,初步明确CH7103含有的抗条锈病基因与已有的抗CYR32小种的基因Yr5、Yr10、Yr15、Yr41不存在等位关系,可能属于新的抗小麦条锈病基因.细胞学研究表明,CH7103及其与小麦品种"中国春"等杂种F1的染色体数目均为2n=42,绝大多数花粉母细胞具有2n=21Ⅱ的配对构型,并能与小麦染色体完好配对.说明CH7103不含较大的外源染色体片段,是一个携带偃麦草抗条锈病基因的异源渐渗系.%CH7103 is a Thinopyrum ponticurn-derived wheat breeding line, which was resistant to stripe rust and powdery mildew, and derived from cross between partial amphiploid Xiaoyan7430 and wheat susceptible cultivars. This study was made to determine the inheritance of resistance to stripe rust in CH7103, and to characterize the origin of the resistance gene and its allelism with known genes, The disease screening demonstrated that CH7103 and its donor Xiaoyan7430 as well as the wild parent were resistant at the seedling and adult stages to CYR31 and CYR32 of the prevalent and most widely virulent in China, whereas all the wheat parents involved were susceptible, indicating that the stripe rust resistance in CH7103 was possibly derived from Th. ponticum. Genetic analysis on the F1,F2, F2∶3 and BC1 populations from stripe rust resistant

  14. Primeira ocorrência de ferrugem em capim-limão causada por Puccinia cymbopogonis no Brasil First report of the lemongrass rust fungi caused by Puccinia cymbopogonis in Brazil

    OpenAIRE

    João Batista Vida; Aníbal Alves de Carvalho Júnior; Jaqueline Rosemeire Verzignassi

    2006-01-01

    È registrada a primeira ocorrência de ferrugem em capim-limão (Cymbopogon citratus (DC.) Stapf), causada por Puccinia cymbopogonis Mass., no Brasil, Estado do Paraná.It is reported the first occurrence of the lemongrass (Cymbopogon citratus (DC.) Stapf) rust fungi caused by Puccinia cymbopogonis Mass. in Brazil, State of Paraná.

  15. Primeira ocorrência de ferrugem em capim-limão causada por Puccinia cymbopogonis no Brasil First report of the lemongrass rust fungi caused by Puccinia cymbopogonis in Brazil

    Directory of Open Access Journals (Sweden)

    João Batista Vida

    2006-03-01

    Full Text Available È registrada a primeira ocorrência de ferrugem em capim-limão (Cymbopogon citratus (DC. Stapf, causada por Puccinia cymbopogonis Mass., no Brasil, Estado do Paraná.It is reported the first occurrence of the lemongrass (Cymbopogon citratus (DC. Stapf rust fungi caused by Puccinia cymbopogonis Mass. in Brazil, State of Paraná.

  16. Did transmission of Helicobacter pylori from humans cause a disease outbreak in a colony of Stripe-faced Dunnarts (Sminthopsis macroura?

    Directory of Open Access Journals (Sweden)

    Every Alison L

    2011-02-01

    Full Text Available Abstract Since the discovery that Helicobacter pylori causes a range of pathologies in the stomachs of infected humans, it has become apparent that Helicobacters are found in a diverse range of animal species where they are frequently associated with disease. In 2003 and 2004, there were two outbreaks of increased mortality associated with gastric bleeding and weight-loss in a captive colony of the Australian marsupial, the Stripe-faced Dunnart (Sminthopsis macroura. The presence of gastric pathology led to an investigation of potential Helicobacter pathogenesis in these animals. Histological examination revealed the presence of gastritis, and PCR analysis confirmed the presence of Helicobacter infection in the stomachs of these marsupials. Surprisingly, sequencing of 16S rRNA from these bacteria identified the species as H. pylori and PCR confirmed the strain to be positive for the important pathogenesis factor, cagA. We therefore describe, for the first time, an apparent reverse zoonotic infection of Stripe-faced Dunnarts with H. pylori. Already prone to pathological effects of stress (as experienced during breeding season, concomitant H. pylori infection appears to be a possible essential but not sufficient co-factor in prototypic gastric bleeding and weight loss in these marsupials. The Stripe-faced Dunnart could represent a new model for investigating Helicobacter-driven gastric pathology. Infections from their human handlers, specifically of H. pylori, may be a potential risk to captive colonies of marsupials.

  17. Cytological effect of Tilt 250 EC in the successive phases of the Triticale rust disease process caused by Puccinia recondita f. sp. tritici

    Directory of Open Access Journals (Sweden)

    Krystyna Brzezicka-Szymczyk

    2014-02-01

    Full Text Available The disease process caused by rust (Puccinia recondita f. sp. tritici in Triticale (Triticale-Wittmack cv. Bolero and the effect of the application of the propikonazole - Tilt 250 EC are described. In plants not protected chemically one could observe the whole pathogen developmental cycle ending with the appearance of uredinia with urediniospores. The highest pathogen susceptibility to chemical agent was observed at the time of inoculation, during incubation and at the beginning of the actual disease. By inhibiting the ergosterol biosynthesis in the fungus cells the preparation (propikonazole inhibited the development of the intra- and extracellular mycelium. The mycelium degeneration manifested itself by the irregular growth of intercellular hyphae, perforation of septa, homogenization of protoplasts and cell collapse. The thickening of the cell wall, modification of the perihaustorial space and protoplast obliteration were observed in the haustoria.

  18. Cytogenetic Characteristics and Resistance to Stripe Rust of Derivatives from Hybrid between Triticum monococcum and Wild Oat%一粒小麦×野燕麦衍生系细胞学特征及条锈病抗性鉴定

    Institute of Scientific and Technical Information of China (English)

    王秀波; 王琪琳; 苟红亮; 韩德俊; 康振生

    2012-01-01

    在一粒小麦与葡萄牙野燕麦远缘杂交后代中,选育了5个形态学稳定的抗条锈病衍生系(‘一粒葡')YLP1、YLP-7、YLP-9、YLP-13和YLP-16,为筛选含有外源染色体且抗性优良的植株,对该衍生系的细胞学特征和抗病性进行了鉴定.细胞学初步鉴定表明:根尖染色体数目均为2n=42,花粉母细胞减数分裂中期Ⅰ染色体构型为2n=21Ⅱ;5个选系与‘中国春’杂交F1花粉母细胞减数分裂中期Ⅰ的异常细胞构型率为16%~50%;初步鉴定这5个‘一粒葡’材料均为易位系,验证了‘一粒葡’是远缘杂交的后代.用9个条锈菌小种分别对9个株系进行苗期抗病性鉴定,有5个株系YLP-1-4、YLP-7、YLP-9-1、YLP-9-3、YLP-16-1对所有参试小种都表现为高抗,且与已知的Yr5、Yr10、Yr15、Yr24/Yr26基因不同,表明‘一粒葡’中可能含有新的抗病基因,可作为抗源用于小麦抗病育种.%Five lines of YLP, YLP-1, YLP-7, YLP-9, YLP-13 and YLP-16,the distant hybridization generations from Triticum monococcum and Avena fatua L. , which stability resistance to Puccinia striiformis f. sp. tritici. (Pst) were selected as experiment materials. In order to choose containing alien chromosomes and the strongest resistant plants, we made cytogenetic analysis and resistance evaluation of these hybrid derivatives. 2n= 42 chromosomes were observed after identification root tip in cytology and the chromosome configuration of most pollen mother cell during metaphase of meiosis I were 2n = 21 Ⅱ ;In the pollen mother cell of FL plants from five derivatives and Chinese Spring,the frequency of abnormal cells were 16% ~50%. Primary identification showed that these materials were translocation lines. YLP were verified generations from distant hybridization. The resistance of these selected nine lines to nine races of stripe rust were done during seedling stage,five lines (YLP-1-4, YLP-7, YLP-9-1 .YLP-9-3 and YLP-16-1) resistant to all of

  19. Rust transformation/rust compatible primers

    Science.gov (United States)

    Emeric, Dario A.; Miller, Christopher E.

    1993-01-01

    Proper surface preparation has been the key to obtain good performance by a surface coating. The major obstacle in preparing a corroded or rusted surface is the complete removal of the contaminants and the corrosion products. Sandblasting has been traditionally used to remove the corrosion products before painting. However, sandblasting can be expensive, may be prohibited by local health regulations and is not applicable in every situation. To get around these obstacles, Industry developed rust converters/rust transformers and rust compatible primers (high solids epoxies). The potential use of these products for military equipment led personnel of the Belvoir Research, Development and Engineering Center (BRDEC) to evaluate the commercially available rust transformers and rust compatible primers. Prior laboratory experience with commercially available rust converters, as well as field studies in Hawaii and Puerto Rico, revealed poor performance, several inherent limitations, and lack of reliability. It was obvious from our studies that the performance of rust converting products was more dependent on the amount and type of rust present, as well as the degree of permeability of the coating, than on the product's ability to form an organometallic complex with the rust. Based on these results, it was decided that the Military should develop their own rust converter formulation and specification. The compound described in the specification is for use on a rusted surface before the application of an organic coating (bituminous compounds, primer or topcoat). These coatings should end the need for sandblasting or the removing of the adherent corrosion products. They also will prepare the surface for the application of the organic coating. Several commercially available rust compatible primers (RCP) were also tested using corroded surfaces. All of the evaluated RCP failed our laboratory tests for primers.

  20. Molecular markers for leaf rust resistance genes in wheat.

    Science.gov (United States)

    Chełkowski, J; Stepień, L

    2001-01-01

    Over 100 genes of resistance to rust fungi: Puccinia recondita f. sp. tritici, (47 Lr - leaf rust genes), P. striiformis (18 Yr - yellow rust genes) and P. graminis f. sp. tritici (41 Sr - stripe rust genes) have been identified in wheat (Triticum aestivum L.) and its wild relatives according to recent papers. Sixteen Lr resistance genes have been mapped using restriction fragments length polymorphism (RFLP) markers on wheat chromosomes. More than ten Lr genes can be identified in breeding materials by sequence tagged site (STS) specific markers. Gene Lrk 10, closely linked to gene Lr 10, has been cloned and its function recognized. Available markers are presented in this review. The STS, cleaved amplified polymorphic sequence (CAPS) and sequence characterized amplified regions (SCAR) markers found in the literature should be verified using Triticum spp. with different genetic background. Simple sequence repeats (SSR) markers for Lr resistance genes are now also available. PMID:14564046

  1. Over-summering of wheat stripe rust (Puccinia striiformis f.sp. tritici in the California Central valley: A case study Supervivencia estival de la roya estriada (Puccinia striiformis f.sp. tritici del trigo en el Valle Central de California: Estudio de caso

    Directory of Open Access Journals (Sweden)

    Huib Tollenaar

    2012-12-01

    Full Text Available To study the over-summering of wheat stripe rust (Puccinia striiformis f.sp. tritici in the California Central Valley (CCV, temperature records from various locations in the CCV during the period 1950-2009 were examined for the occurrence of lethal maximum temperatures for the uredinia and uredinio-mycelium of this fungus. The lethal upper threshold temperature for the uredinial stage of P.s. tritici, estimated to be 40.5 °C on the basis of data published elsewhere, and the sum, accumulated during ten consecutive days, of the respective lethal temperature quotients (ALTQio, accounting for the partial lethal effect of the daily ambient temperatures between 30 and 40.5 °C on the uredinial stage of P.s. tritici, were used as yardsticks for thermal lethality. The results indicate that, in these 60 yr, the uredinia and the uredinio-mycelium of P.s. tritici could not possibly have over-summered at any of the locations studied. The Sierra Nevada Mountains, together with the Tulelake Basin and the coastal zone of the Pacific Ocean are the only two areas in California with appropriate environmental conditions for the summer-survival of the uredinial stage of stripe rust. Therefore, it is presumed that the inoculum for the initial infections of P.s. tritici in wheat fields in the CCV during the following growing season originates in either one or both of these areas, although, a potential third source of inoculum for the initial infections of stripe rust in the CCV could also be involved. Namely, the possible presence of telia with viable teliospores of P.s. tritici in autumn on straw of the threshed wheat fields or on volunteer wheat plants in the CCV, in conjunction with the accidental concurrence of nearby stripe rust susceptible barberry (Berberis spp., could lead to the development of alternative, endogenous sources of inoculum in the CCV.Para estudiar la supervivencia estival de la roya estriada (Puccinia striiformis f.sp. tritici del trigo

  2. The Rust Fungi

    Science.gov (United States)

    The rust fungi are a monophyletic group of approximately 7,0000 species in the basidiomycota and are highly specialized obligate parasites of plants. The life cycle of rusts can be complex. Some rusts have up to five spore stages that alternate between haploid and dikaryotic nuclear conditions and t...

  3. Leaf Rust of Wheat: Pathogen Biology, Variation and Host Resistance

    Directory of Open Access Journals (Sweden)

    James Kolmer

    2013-01-01

    Full Text Available Rusts are important pathogens of angiosperms and gymnosperms including cereal crops and forest trees. With respect to cereals, rust fungi are among the most important pathogens. Cereal rusts are heteroecious and macrocyclic requiring two taxonomically unrelated hosts to complete a five spore stage life cycle. Cereal rust fungi are highly variable for virulence and molecular polymorphism. Leaf rust, caused by Puccinia triticina is the most common rust of wheat on a worldwide basis. Many different races of P. triticina that vary for virulence to leaf rust resistance genes in wheat differential lines are found annually in the US. Molecular markers have been used to characterize rust populations in the US and worldwide. Highly virulent races of P. triticina are selected by leaf rust resistance genes in the soft red winter wheat, hard red winter wheat and hard red spring wheat cultivars that are grown in different regions of the US. Cultivars that only have race-specific leaf rust resistance genes that are effective in seedling plants lose their effective resistance and become susceptible within a few years of release. Cultivars with combinations of race non-specific resistance genes have remained resistant over a period of years even though races of the leaf rust population have changed constantly.

  4. Glyphosate Control of Orange and Brown Rusts in Glyphosate-Sensitive Sugarcane Cultivars

    Science.gov (United States)

    Technical Abstract: Brown and orange rust diseases cause substantial yield reductions on sugarcane (Saccharum spp.) in Florida and other regions where sugarcane is grown. Brown rust caused by Puccinia melanocephala Syd. & P. Syd has been present in Florida since 1978 and orange rust caused by Pucci...

  5. Holographic stripes.

    Science.gov (United States)

    Rozali, Moshe; Smyth, Darren; Sorkin, Evgeny; Stang, Jared B

    2013-05-17

    We construct inhomogeneous asymptotically anti-de Sitter black hole solutions corresponding to the spontaneous breaking of translational invariance and the formation of striped order in the boundary field theory. We find that the system undergoes a second-order phase transition in both the fixed density and fixed chemical potential ensembles, for sufficiently large values of the axion coupling. We investigate the phase structure as a function of the temperature, axion coupling, and the stripe width. The bulk solutions have striking geometrical features related to a magnetoelectric effect associated with the existence of a near-horizon topological insulator. At low temperatures, the horizon becomes highly inhomogeneous and tends to pinch off. PMID:25167395

  6. Spatial scaling relationships for spread of disease caused by a wind-dispersed plant pathogen

    OpenAIRE

    Mundt, Christopher C.; Sackett, Kathryn E.

    2012-01-01

    Spatial scale is of great importance to understanding the spread of organisms exhibiting long-distance dispersal (LDD). We tested whether epidemics spread in direct proportion to the size of the host population and size of the initial disease focus. This was done through analysis of a previous study of the effects of landscape heterogeneity variables on the spread of accelerating epidemics of wheat (Triticum aestivum) stripe rust, caused by the fungus Puccinia striiformis f. sp. tritici. End-...

  7. Inheritance of Resistance Chinese Wheat Stripe Rust Races CYR30 and CYR31 in Durum Wheat Line SWAHEN 3%硬粒小麦SWAHEN 3抗条锈(条中30、31)性状的遗传分析

    Institute of Scientific and Technical Information of China (English)

    杨武云; 余毅; 胡晓蓉; 杨家秀; 颜济; 杨俊良

    2001-01-01

    硬粒小麦SWAHEN 3成株期对中国条锈病新小种条中30(CYR30)和条中31(CYR31)免疫-高抗。为明确SWAHEN 3抗条锈性状的遗传规律,将SWAHEN 3与高感硬粒小麦品种Kappli杂交,获得杂种F1、F2群体;将SWAHEN 3与川育12等5个四川高感普通小麦品种杂交,获得杂种F1。对抗×感硬粒小麦杂种F1、F2群体分小种(CYR30和CYR31)接种鉴定,结果表明,杂种F1抗性反应与抗病亲本SWAHEN 3一致,为免疫-高抗;杂种F2群体中免疫-高抗单株与抗-高感单株之比符合两对显性互补基因分离比例9∶7。对抗病硬粒小麦×感病普通小麦杂种F1分小种(CYR30和CYR31)接种鉴定,结果表明,杂种F1抗性反应也与抗病亲本SWAHEN 3一致,为免疫-高抗。分析表明,SWAHEN 3对条中30、31的抗性受两对显性互补基因控制,其抗性基因能在与四川高产小麦的杂交后代中完全表达。%SWAHEN 3, a durum wheat line introduced from CIMMYT, was highly resistant to Chinese new stripe rust races CYR30 and CYR31 at adult stage. In order to determince the inheritance of resistance in it, SWAHEN 3 was crossed with a highly susceptible durum variety Kappli and five highly susceptible cultivars of Sichuan common wheat. Analysis of data from F1~F2 of cross between SWAHEN 3 and Kappli revealed that the resistance to CYR30 and CYR31 of SWAHEN 3 was controlled by two complementary dominant genes. And all of F1 hybrids of SWAHEN 3 crossed with five Sichuan common wheat cultivars were immune to the two Chinese stripe rust races. This result could indicated the resistance of SWAHEN 3 could be expressed in common wheat.

  8. Limited divergence among populations of rice striped stem borer in southeast China caused by gene flow: Implications for resistance management

    Institute of Scientific and Technical Information of China (English)

    Chao YANG; Xiao YANG; Qiang FU; Kai XU; Bao-Rong LU

    2012-01-01

    Rice striped stem borer (RSSB,Chilo suppressalis) is a serious lepidopteron pest occurring in rice ecosystems of Asia and Europe.Genetically modified (GM) insect-resistant Bt rice has been developed to deter lepidopteron pests including RSSB.The concern of resistance evolution to the Bt toxin by the pests under commercial cultivation of GM Bt rice and the need of effective management of the resistance encourage the studies of genetic variation and divergence,as well as gene flow of RSSB populations.We analyzed 13 RSSB populations fed on water-oats or rice plants,respectively,from southeast China applying the fluorescent amplified fragment length polymorphism fingerprints.A generally moderate level of genetic variation was detected in the populations,as estimated by Nei's genetic diversity (0.27) and Shannon's index (0.42).The FsT- and AMOVA values indicated a low level (~ 12%) of genetic divergence among the RSSB populations.A relatively frequent gene flow (an average Nm =2.62) was detected among the 12 RSSB populations,which may explain the limited genetic divergence among the rice-feeding populations.This explanation gains support by the assignment test of the corresponding populations,suggesting that a considerable proportion of individuals was contributed from non-native populations.Our results revealed that the moderate level of genetic diversity combined with relatively frequent gene flow among RSSB populations across a large geographical range may slow down the resistance evolution of the RSSB populations,given that a proper measure of resistance management is taken.

  9. Comparative transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

    Science.gov (United States)

    Leaf rust caused by the fungus Puccinia triticina is a widespread disease of wheat. Host resistance strategies to control leaf rust have relied upon race-specific and non-race specific leaf rust resistance (Lr) genes. Although race-specific Lr genes are efficient in halting pathogen growth, high lev...

  10. Using hierarchical clustering of secreted protein families to classify and rank candidate effectors of rust fungi

    Science.gov (United States)

    Rust fungi are obligate biotrophic pathogens causing considerable damage on crop plants. P. graminis f. sp. tritici, the causal agent of wheat stem rust, and M. larici-populina, the poplar rust pathogen, have strong deleterious impact on wheat and poplar wood production, respectively. The recently r...

  11. The Big Rust and the Red Queen: Long-Term Perspectives on Coffee Rust Research.

    Science.gov (United States)

    McCook, Stuart; Vandermeer, John

    2015-09-01

    Since 2008, there has been a cluster of outbreaks of the coffee rust (Hemileia vastatrix) across the coffee-growing regions of the Americas, which have been collectively described as the Big Rust. These outbreaks have caused significant hardship to coffee producers and laborers. This essay situates the Big Rust in a broader historical context. Over the past two centuries, coffee farmers have had to deal with the "curse of the Red Queen"-the need to constantly innovate in the face of an increasing range of threats, which includes the rust. Over the 20th century, particularly after World War II, national governments and international organizations developed a network of national, regional, and international coffee research institutions. These public institutions played a vital role in helping coffee farmers manage the rust. Coffee farmers have pursued four major strategies for managing the rust: bioprospecting for resistant coffee plants, breeding resistant coffee plants, chemical control, and agroecological control. Currently, the main challenge for researchers is to develop rust control strategies that are both ecologically and economically viable for coffee farmers, in the context of a volatile, deregulated coffee industry and the emergent challenges of climate change. PMID:26371395

  12. Gene discovery in EST sequences from the wheat leaf rust fungus Puccinia triticina sexual spores, asexual spores and haustoria, compared to other rust and corn smut fungi

    Directory of Open Access Journals (Sweden)

    Wynhoven Brian

    2011-03-01

    Full Text Available Abstract Background Rust fungi are biotrophic basidiomycete plant pathogens that cause major diseases on plants and trees world-wide, affecting agriculture and forestry. Their biotrophic nature precludes many established molecular genetic manipulations and lines of research. The generation of genomic resources for these microbes is leading to novel insights into biology such as interactions with the hosts and guiding directions for breakthrough research in plant pathology. Results To support gene discovery and gene model verification in the genome of the wheat leaf rust fungus, Puccinia triticina (Pt, we have generated Expressed Sequence Tags (ESTs by sampling several life cycle stages. We focused on several spore stages and isolated haustorial structures from infected wheat, generating 17,684 ESTs. We produced sequences from both the sexual (pycniospores, aeciospores and teliospores and asexual (germinated urediniospores stages of the life cycle. From pycniospores and aeciospores, produced by infecting the alternate host, meadow rue (Thalictrum speciosissimum, 4,869 and 1,292 reads were generated, respectively. We generated 3,703 ESTs from teliospores produced on the senescent primary wheat host. Finally, we generated 6,817 reads from haustoria isolated from infected wheat as well as 1,003 sequences from germinated urediniospores. Along with 25,558 previously generated ESTs, we compiled a database of 13,328 non-redundant sequences (4,506 singlets and 8,822 contigs. Fungal genes were predicted using the EST version of the self-training GeneMarkS algorithm. To refine the EST database, we compared EST sequences by BLASTN to a set of 454 pyrosequencing-generated contigs and Sanger BAC-end sequences derived both from the Pt genome, and to ESTs and genome reads from wheat. A collection of 6,308 fungal genes was identified and compared to sequences of the cereal rusts, Puccinia graminis f. sp. tritici (Pgt and stripe rust, P. striiformis f. sp

  13. Genome analysis of nonhost resistance to stem rust in Brachypodium

    Science.gov (United States)

    Wheat stem rust (WSR) caused by Puccinia graminis f. sp. tritici (Pgt) is considered to be the most damaging of the rusts. The new WSR isolate Ug99 which recently emerged in eastern Africa is virulent on the majority of the world’s wheat cultivars. The threat to global wheat production has driven mu...

  14. Identification of markers linked to the Ug99 stem rust resistance gene Sr28 in wheat (Triticum aestivum L.)

    Science.gov (United States)

    Wheat stem rust caused by Puccinia graminis f. sp. tritici can cause devastating yield losses in wheat. Over the last several decades, stem rust has been controlled worldwide through the use of genetic resistance. Stem rust race TTKSK (Ug99), first detected in Uganda in 1998, threatens global wheat ...

  15. Prospects for advancing defense to cereal rusts through genetical genomics.

    Science.gov (United States)

    Ballini, Elsa; Lauter, Nick; Wise, Roger

    2013-01-01

    Rusts are one of the most severe threats to cereal crops because new pathogen races emerge regularly, resulting in infestations that lead to large yield losses. In 1999, a new race of stem rust, Puccinia graminis f. sp. tritici (Pgt TTKSK or Ug99), was discovered in Uganda. Most of the wheat and barley cultivars grown currently worldwide are susceptible to this new race. Pgt TTKSK has already spread northward into Iran and will likely spread eastward throughout the Indian subcontinent in the near future. This scenario is not unique to stem rust; new races of leaf rust (Puccinia triticina) and stripe rust (Puccinia striiformis) have also emerged recently. One strategy for countering the persistent adaptability of these pathogens is to stack complete- and partial-resistance genes, which requires significant breeding efforts in order to reduce deleterious effects of linkage drag. These varied resistance combinations are typically more difficult for the pathogen to defeat, since they would be predicted to apply lower selection pressure. Genetical genomics or expression Quantitative Trait Locus (eQTL) analysis enables the identification of regulatory loci that control the expression of many to hundreds of genes. Integrated deployment of these technologies coupled with efficient phenotyping offers significant potential to elucidate the regulatory nodes in genetic networks that orchestrate host defense responses. The focus of this review will be to present advances in genetical genomic experimental designs and analysis, particularly as they apply to the prospects for discovering partial disease resistance alleles in cereals. PMID:23641250

  16. MOLECULAR SCREENING OF LEAF RUST AND STRIP RUST RESISTANCE GENES IN F5 BREAD WHEAT IN EGYPT

    Directory of Open Access Journals (Sweden)

    Reham M. Abd El-Azeem

    2014-03-01

    Full Text Available Highly wheat production in Egypt is constrained due to many diseases. Rust and stripe (yellow rust diseases consider from the most important wheat diseases in Egypt. Thus, molecular screening of genetically resistant cultivars, varieties, accessions and hybrids offspring through many generations, is one of the most sustainable solutions to overcome these diseases. The objective of this study is screening strip (yellow rust and leaf rust resistance genes in the three parents varieties, and F5 bread wheat families resulting from two hybrids: (Debeira x Sahel1 and (Sids6 x Sahel1. This was established by using Yr10 and Yr15 SSR markers for screening (yellow rust resistance genes, and Lr9, Lr19, Lr24 and Lr26 as STS and SCAR markers for screening leaf rust resistance genes. The obtained results showed that, none of the studied wheat families had all the screened resistance genes. Where, families resulting from (Debeira x Sahel1 did not have any of the studied rust resistance genes. While, the families resulting from (Sids6 x Sahel1 had both SSR markers except family no. 22 had Yr10 only. For the Lr genes, all the studied families of both hybrids had the Lr9 resistance gene. There were variations between families in having the Lr19 resistance gene. The SCAR marker for Lr24 resistance gene was found in Debeira parent and families no. 17, 18,20 ,24 ,30 and 39 of its hybrid. No bands of this marker were found in any of the parents or families of (Sids6 x Sahel1 hybrid. Finally the Lr26 STS marker was not found in any of the studied bread wheat families

  17. Experts note possible discovery of Asian Soybean Rust spores

    OpenAIRE

    Johnson, Mary Ann

    2005-01-01

    Virginia Tech scientists say that there has been a change in the status of the fungus causing Asian Soybean Rust but that the new information is still too preliminary for any action on the part of the Commonwealth's soybean producers.

  18. Spread, genetic variation and methods for the detection of Puccinia kuehnii, the causal agent of sugarcane orange rust.

    Science.gov (United States)

    Sugarcane is susceptible to infection by two rust pathogens, Puccinia melanocephala and P. kuehnii, causing brown and orange rust, respectively. Orange rust of sugarcane was first reported in the Western hemisphere in Florida in July 2007. The pathogen was found to be distributed widely throughout t...

  19. Major gene for field stem rust resistance co-locates with resistance gene Sr12 in "Thatcher" wheat

    Science.gov (United States)

    Stem rust, caused by Puccinia graminis (Pgt), is a damaging disease of wheat that can be controlled by utilizing effecting stem rust resistance genes. "Thatcher" wheat carries complex resistance to stem rust that is enhanced in the presence of the resistance gene Lr34. The purpose of this study was ...

  20. InIdentification and characterization of pathotypes in Puccinia horiana, a rust pathogen of Chrysanthemum x morifolium

    NARCIS (Netherlands)

    Backer, de M.; Alaei, H.; Bockstaele, van E.; Roldan-Ruiz, I.; Lee, van der T.; Maes, M.; Heungens, K.

    2011-01-01

    Puccinia horiana is the causal agent of chrysanthemum white rust or Japanese rust. This microcyclic autoecious rust has a quarantine status and can cause major damage in the commercial production of Chrysanthemum x morifolium. Given the international and often trans-continental production of plantin

  1. Evaluation and Characterization of Seedling Resistances to Stem Rust Ug99 Races in Wheat-Alien Species Derivatives

    Science.gov (United States)

    Stem rust, a devastating disease (caused by Puccinia graminis Pers.:Pers. f. sp. tritici Eriks. & Henn.) of wheat (Triticum aestivium L.), has been effectively controlled worldwide for the past 50 years by deployment of stem rust resistance (Sr) genes in wheat cultivars. However, a new stem rust ra...

  2. Disease management of leek rust, a study at field, farm and regional level.

    OpenAIRE

    Jong, de, Franciska

    1995-01-01

    Leek rust, caused by Puccinia allii Rud., is an important disease of leek ( Allium porrum L.) in the Netherlands. The quality decrease of the product associated with a light infestation of leek rust may cause severe economic loss to the grower. The aim of this study is to develop an improved pathosystem management for leek rust at field, farm and regional level with low use of fungicides, through preventive measures and supervised control based on sampling for detection.Basic temporal and spa...

  3. A review of soybean rust from a South African perspective

    Directory of Open Access Journals (Sweden)

    J. Antony Jarvie

    2010-01-01

    Full Text Available This review article describes the nature of the soybean rust pathogen, its interaction with the soybean host and documents some of the history of soybean rust in South Africa. Soybean rust has affected soybean cropping in parts of South Africa since 2001. The disease causes leaf lesions, which may progress to premature defoliation and ultimately result in grain yield loss in susceptible soybean genotypes. Chemical control measures have been successfully employed to limit commercial yield losses in South Africa; however, controlling the effects of this disease through host-resistance or tolerance mechanisms remains a long-term goal.

  4. Wheat Rust Toolbox Related to New Initiatives on Yellow Rust

    DEFF Research Database (Denmark)

    Hansen, Jens Grønbech; Lassen, Poul

    of interactive maps; including information on surveillance (disease data over years and across countries for all three rusts) and graphs and maps indicating the distribution of UG99 and related pathotypes. Graphs and maps are integrated with, and disseminated, via the Rust SPORE web portal at FAO (http......A wheat rust toolbox was developed in the frame of the Borlaug Global Rust Initiative (BGRI) to support the early warning and monitoring of stem rust on a global scale. The toolbox consists of a number of databases and web applications for data management, quality control, dissemination and display...... – 2009), and as soon as possible this will be expanded to cover all global yellow rust data available via the GRRC. The presentation will focus on experiences from the previous work on global databases and web based information systems, as well as propose ideas how the toolbox can be helpful regarding...

  5. Porous Alumina Films with Width-Controllable Alumina Stripes

    Directory of Open Access Journals (Sweden)

    Huang Shi-Ming

    2010-01-01

    Full Text Available Abstract Porous alumina films had been fabricated by anodizing from aluminum films after an electropolishing procedure. Alumina stripes without pores can be distinguished on the surface of the porous alumina films. The width of the alumina stripes increases proportionally with the anodizing voltage. And the pores tend to be initiated close to the alumina stripes. These phenomena can be ascribed to the electric field distribution in the alumina barrier layer caused by the geometric structure of the aluminum surface.

  6. Porous Alumina Films with Width-Controllable Alumina Stripes

    OpenAIRE

    Huang Shi-Ming; Pu Lin; Shi Yi; Huang Kai; Wu Zhi-Ming; Ji Li; Kang Jun-Yong

    2010-01-01

    Abstract Porous alumina films had been fabricated by anodizing from aluminum films after an electropolishing procedure. Alumina stripes without pores can be distinguished on the surface of the porous alumina films. The width of the alumina stripes increases proportionally with the anodizing voltage. And the pores tend to be initiated close to the alumina stripes. These phenomena can be ascribed to the electric field distribution in the alumina barrier layer caused by the geometric structure o...

  7. Cedar-apple Rust

    Directory of Open Access Journals (Sweden)

    Clark L. Ovrebo

    2006-12-01

    Full Text Available The photograph on the cover illustrates a phenomenon of nature that can be seen in the Oklahoma springtime at about the same time that the redbuds are in flower and the morels are fruiting. The orange-colored masses represent a stage in the life cycle of cedar-apple rust, Gymnosporangium juniperi-virginianae, and this stage is occurring on the eastern red cedar (Juniperus virginiana.

  8. Molecular Mapping of Stem Rust Resistance Gene Sr40 in Wheat

    Science.gov (United States)

    Stem rust, caused by Puccinia graminis f. sp. tritici, was historically one of the most destructive diseases of wheat worldwide. Deployment of resistant cultivars successfully prevented rust epidemics over the past several decades. Unfortunately, race TTKS (termed Ug99) has emerged in Africa to rend...

  9. POPULATION GENETICS OF THE WHEAT LEAF RUST FUNGUS, PUCCINIA TRITICINA IN CENTRAL ASIA

    Science.gov (United States)

    Wheat leaf rust, caused by Puccinia triticina, is a major disease of wheat in Central Asia. Single uredinial isolates from Armenia, Azerbaijan, Tajikistan, Kazakhstan, Uzbekistan, and Kyrgyzstan, 131 in total, were tested for virulence to 20 isolines of Thatcher wheat with single leaf rust resistan...

  10. Identifying Plants of Stampede Pinto Bean with Resistance to New races of Rust Pathogen

    Science.gov (United States)

    The rust disease of dry beans is caused by a hyper-variable fungus that continually produces new virulent strains. Two new strains, known as races, emerged in Michigan and North Dakota in 2007 and 2008, respectively, which surmounted the resistance of a widely used rust-resistance gene known as Ur-...

  11. Duplications and losses in gene families of rust pathogens highlight putative effectors

    Directory of Open Access Journals (Sweden)

    Amanda L. Pendleton

    2014-06-01

    Full Text Available Rust fungi are a group of fungal pathogens that cause some of the world’s most destructive diseases of trees and crops. A shared characteristic among rust fungi is obligate biotrophy, the inability to complete a lifecycle without a host. This dependence on a host species likely affects patterns of gene expansion, contraction, and innovation within rust pathogen genomes. The establishment of disease by biotrophic pathogens is reliant upon effector proteins that are encoded in the fungal genome and secreted from the pathogen into the host’s cell apoplast or within the cells. This study uses a comparative genomic approach to elucidate putative effectors and determine their evolutionary histories. We used OrthoMCL to identify nearly 20,000 gene families in proteomes of sixteen diverse fungal species, which include fifteen basidiomycetes and one ascomycete. We inferred patterns of duplication and loss for each gene family and identified families with distinctive patterns of expansion/contraction associated with the evolution of rust fungal genomes. To recognize potential contributors for the unique features of rust pathogens, we identified families harboring secreted proteins that: i arose or expanded in rust pathogens relative to other fungi, or ii contracted or were lost in rust fungal genomes. While the origin of rust fungi appears to be associated with considerable gene loss, there are many gene duplications associated with each sampled rust fungal genome. We also highlight two putative effector gene families that have expanded in Cqf that we hypothesize have roles in pathogenicity.

  12. Optimal alarm system applied in coffee rust

    Directory of Open Access Journals (Sweden)

    Luciene Resende Gonçalves

    2014-02-01

    Full Text Available Alarm systems have very great utility in detecting and warning of catastrophes. This methodology was applied via TARSO model with Bayesian estimation, serving as a forecasting mechanism for coffee rust disease. The coffee culture is very susceptible to this disease causing several records of incidence in most cultivated crops. Researches involving this limiting factor for production are intense and frequent, indicating environmental factors as responsible for the epidemics spread, which does not occur if these factors are not favorable. The fitting type used by the a posteriori probability, allows the system to be updated each time point. The methodology was applied to the rust index series in the presence of the average temperature series. Thus, it is possible to verify the alarm resulted or in a high catastrophe detection in points at which the catastrophe has not occurred, or in the low detections if the point was already in the catastrophe state.

  13. La Roya naranja de la caña de azúcar, una enfermedad emergente: su impacto y comparación con la roya marrón English Translation: Orange rust of sugarcane, an emerging disease: its impact and comparison to brown rust.

    Science.gov (United States)

    Sugarcane orange rust, caused by Puccinia kuehnii, was first detected in Florida in 2007, the first for Western Hemisphere. Subsequently, it has spread to the majority of sugarcane producing countries in the hemisphere. Orange rust is distinguished from brown rust its pustule size which is slightl...

  14. Screening for Sugarcane Brown Rust in the First Clonal Stage of the Canal Point Sugarcane Breeding Program

    OpenAIRE

    Duli Zhao; R. Wayne Davidson; Miguel Baltazar; Comstock, Jack C.; Per McCord; Sushma Sood

    2015-01-01

    Sugarcane (Saccharum spp.) brown rust (caused by Puccinia melanocephala Syd. & P. Syd.) was first reported in the United States in 1978 and is still one of the great challenges for sugarcane production. A better understanding of sugarcane genotypic variation in response to brown rust will help optimize breeding and selection strategies for disease resistance. Brown rust ratings were scaled from non-infection (0) to severe infection (4) with intervals of 0.5 and routinely recorded for geno...

  15. Spin stripes in nanotubes

    OpenAIRE

    Kleiner, Alex

    2002-01-01

    It is shown here that electrons on the surface of a nanotube in a perpendicular magnetic field undergo spin-chirality separation along the circumference. Stripes of spin-polarization propagate along the tube, with a spatial pattern that can be modulated by the electron filling.

  16. Unveiling common responses of Medicago truncatula to appropriate and inappropriate rust species

    Directory of Open Access Journals (Sweden)

    Maria Carlota eVaz Patto

    2014-11-01

    Full Text Available Little is known about the nature of effective defense mechanisms in legumes to pathogens of remotely related plant species. Some rust species are among pathogens with broad host range causing dramatic losses in various crop plants. To understand and compare the different host and nonhost resistance responses of legume species against rusts, we characterized the reaction of the model legume Medicago truncatula to one appropriate (Uromyces striatus and two inappropriate (U. viciae-fabae and U. lupinicolus rusts. We found that similar pre and post-haustorial mechanisms of resistance appear to be operative in M. truncatula against appropriate and inappropriate rust fungus. The appropriate U. striatus germinated better on M. truncatula accessions then the inappropriate U. viciae-fabae and U. lupinicolus, but once germinated, germ tubes of the three rusts had a similar level of success in finding stomata and forming an appressoria over a stoma. However responses to different inappropriate rust species also showed some specificity, suggesting a combination of non specific and specific responses underlying this legume nonhost resistance to rust fungi. Further genetic and expression analysis studies will contribute to the development of the necessary molecular tools to use the present information on host and nonhost resistance mechanisms to breed for broad-spectrum resistance to rust in legume species.

  17. Infection of Brachypodium distachyon with selected grass rust pathogens.

    Science.gov (United States)

    Ayliffe, Michael; Singh, Davinder; Park, Robert; Moscou, Matthew; Pryor, Tony

    2013-08-01

    The model temperate grass Brachypodium distachyon is considered a nonhost for wheat rust diseases caused by Puccinia graminis f. sp. tritici, P. triticina, and P. striiformis. Up to 140 Brachypodium accessions were infected with these three rust species, in addition to P. graminis ff. spp. avena and phalaridis. Related B. distachyon lines showed similar cytological nonhost resistance (NHR) phenotypes, and an inverse relationship between P. graminis f. sp. tritici and P. striiformis growth was observed in many lines, with accessions that allowed the most growth of P. graminis f. sp. tritici showing the least P. striiformis development and vice versa. Callose deposition patterns during infection by all three rust species showed similarity to the wheat basal defense response while cell death that resulted in autofluorescence did not appear to be a major component of the defense response. Infection of B. distachyon with P. graminis f. sp. avena and P. graminis f. sp. phalaridis produced much greater colonization, indicating that P. graminis rusts with Poeae hosts show greater ability to infect B. distachyon than those with Triticeae hosts. P. striiformis infection of progeny from two B. distachyon families demonstrated that these NHR phenotypes are highly heritable and appear to be under relatively simple genetic control, making this species a powerful tool for elucidating the molecular basis of NHR to cereal rust pathogens. PMID:23594350

  18. Evaluation of Some Biocontrol Agents/Antagonistic Microbes Against Pastule Development of Leaf Rust of Wheat Caused by Puccinia recondita f. sp. Tritici Roberge ex. Desmaz (Erikson and Henn D.M. Henderson

    Directory of Open Access Journals (Sweden)

    A. Sheroze

    2002-01-01

    Full Text Available Out of five biocontrol agents/antagonistic microbes viz., Verticillium lecanii, Paecilomyces fumosoroseus, Beauveria bassiana, Cladosporium cladosporiodes and Metarrhizium anisopliae, Beauveria bassiana proved the best in retarding the postulation/rust development in wheats. When the microbes tested alone against leaf rust development, B. bassiana proved excellent and in combination with Verticillium lecanii and Paecilomyces furnosoroseus. Although there was an increase in colony diameter after 2nd week but the pattern of growth was the same as after one week of incubation of bio-control agents application.

  19. An analysis of the risk of introduction of additional strains of the rust puccinia psidii Winter ('Ohi'a Rust) to Hawai'i

    Science.gov (United States)

    Loope, Lloyd; La Rosa, Anne Marie

    2010-01-01

    In April 2005, the rust fungus Puccinia psidii (most widely known as guava rust or eucalyptus rust) was found in Hawai'i. This was the first time this rust had been found outside the Neotropics (broadly-defined, including subtropical Florida, where the rust first established in the 1970s). First detected on a nursery-grown 'ohi'a plant, it became known as ''ohi'a rust'in Hawai'i. The rust spread rapidly and by August 2005 had been found throughout the main Hawaiian Islands. The rust probably reached Hawai'i via the live plant trade or via the foliage trade. In Hawai'i, the rust has infected three native plant species and at least eight non-native species. Effects have been substantial on the endangered endemic plant Eugenia koolauensis and the introduced rose apple, Syzygium jambos. Billions of yellow, asexual urediniospores are produced on rose apple, but a complete life cycle (involving sexual reproduction) has not yet been observed. The rust is autoecious (no alternate host known) on Myrtaceae. The strain introduced into Hawai'i is found sparingly on 'ohi'a (Metrosideros polymorpha), the dominant tree of Hawai'i's forests, with sporadic damage detected to date. The introduction of a rust strain that causes widespread damage to 'ohi'a would be catastrophic for Hawai'i's native biodiversity. Most imports of material potentially contaminated with rust are shipped to Hawai'i from Florida and California (from which P. psidii was reported in late 2005 by Mellano, 2006). Florida is known to have multiple strains. The identity of the strain or strains in California is unclear, but one of them is known to infect myrtle, Myrtus communis, a species commonly imported into Hawai'i. It is important to ecosystem conservation and commercial forestry that additional rust strains or genotypes be prevented from establishing in Hawai'i. The purpose of this analysis of risk is to evaluate the need for an interim rule by the Hawai'i Department of Agriculture to regulate plant

  20. Characterization of stem rust resistance in wheat cultivar 'Gage'

    Science.gov (United States)

    Wheat (Triticum spp.) stem rust, caused by Puccinia graminis f. sp. tritici Eriks. & E. Henn. (Pgt), re-emerged as a devastating disease of wheat because of virulent race Ug99 (TTKSK). Many bread wheat (T. aestivum L.) cultivars grown in North America are susceptible to Ug99 or its derivative races ...

  1. Geographic Distribution of Stem Rust Resistance in Wheat Landraces

    Science.gov (United States)

    Wheat stem rust disease, caused by Puccinia graminis (Pers.) f. sp. tritici, is of renewed concern due to the emergence of new virulent races in East Africa. Landrace accessions of common wheat, Triticum aestivum L. subsp. aestivum, and durum wheat, T. turgidum L. subsp. durum, from the National Sma...

  2. Identification of rust (Puccinia helianthi Schw.) races in sunflower (Helianthus annuus L.) in Turkey

    OpenAIRE

    Tan A.S.

    2010-01-01

    Sunflower (Helianthus annuus L.), with its high oil quality, is one of the major and most valuable oilseed crops in the world. Sunflower rust, caused by Puccinia helianthi Schw., is one of the major foliar diseases of sunflower. The pathogen is present wherever sunflower is grown in the world and causes important yield losses when severe epidemics occur. The objective of this study was to identify the races of sunflower rust under field conditions in the fi...

  3. Determination of the reactions of some wheat genotypes to different stem rust races

    OpenAIRE

    MERT, Zafer; Karakaya, Aziz; AKAN, Kadir; ÇETİN, Lütfi; DÜŞÜNCELİ, Fazıl

    2012-01-01

    Wheat is one of the most important energy and mineral sources for human and it provides nutrition for billions of people. Rust diseases are among the most important biotic stress factors limiting wheat production in Turkey. Stem rust caused by Puccinia graminis f. sp. tritici affects wheat in high altitude areas where plant growth period is long. It was also reported from transitional zones and coastal areas of Turkey. The disease causes significant yield and quality losses of grain and...

  4. Validation of molecular markers for new stem rust resistance (Sr) genes in U.S. hard winter wheat

    Science.gov (United States)

    Stem rust, caused by Puccinia graminis f. sp. tritici (Pgt), is one of the most serious diseases of wheat (Triticum aestivum L.) worldwide. The discovery of new Pgt races in Africa, Ug99 and its variants, brings a new threat to global wheat production. Pyramiding several stem rust resistance genes i...

  5. Development of a wheat-thinopyrum intermedium robertsonian translocation stock with Sr44 resistance to stem rust (Ug99)

    Science.gov (United States)

    Stem rust of bread wheat (Triticum aestivum L.) caused by the fungus Puccinia graminis Pers. F. is one of the most important threats of wheat production. A new stem rust race Ug99 is virulent to most of the resistant genes deployed in cultivars. New genes for Ug99 resistance can be transferred to wh...

  6. The adult plant rust resistance loci Lr34/Yr18 and Lr46/Yr29 are important determinants of partial resistance to powdery mildew in bread wheat line Saar.

    Science.gov (United States)

    Lillemo, M; Asalf, B; Singh, R P; Huerta-Espino, J; Chen, X M; He, Z H; Bjørnstad, A

    2008-05-01

    Powdery mildew, caused by Blumeria graminis f. sp. tritici is a major disease of wheat (Triticum aestivum L.) that can be controlled by resistance breeding. The CIMMYT bread wheat line Saar is known for its good level of partial and race non-specific resistance, and the aim of this study was to map QTLs for resistance to powdery mildew in a population of 113 recombinant inbred lines from a cross between Saar and the susceptible line Avocet. The population was tested over 2 years in field trials at two locations in southeastern Norway and once in Beijing, China. SSR markers were screened for association with powdery mildew resistance in a bulked segregant analysis, and linkage maps were created based on selected SSR markers and supplemented with DArT genotyping. The most important QTLs for powdery mildew resistance derived from Saar were located on chromosomes 7DS and 1BL and corresponded to the adult plant rust resistance loci Lr34/Yr18 and Lr46/Yr29. A major QTL was also located on 4BL with resistance contributed by Avocet. Additional QTLs were detected at 3AS and 5AL in the Norwegian testing environments and at 5BS in Beijing. The population was also tested for leaf rust (caused by Puccinia triticina) and stripe rust (caused by P. striiformis f. sp. tritici) resistance and leaf tip necrosis in Mexico. QTLs for these traits were detected on 7DS and 1BL at the same positions as the QTLs for powdery mildew resistance, and confirmed the presence of Lr34/Yr18 and Lr46/Yr29 in Saar. The powdery mildew resistance gene at the Lr34/Yr18 locus has recently been named Pm38. The powdery mildew resistance gene at the Lr46/Yr29 locus is designated as Pm39. PMID:18347772

  7. Photon energy absorption rate of a striped Hall gas

    OpenAIRE

    Ishizuka, Y.; Aoyama, T.; Maeda, N.; Ishikawa, K

    2004-01-01

    Using symmetries of the current correlation function, we analyze the frequency dependence of the photon energy absorption rate of a striped Hall gas. Since the magnetic translational symmetry is spontaneously broken in the striped Hall gas, a Nambu-Goldstone (NG) mode appears. It is shown that the NG mode causes a sharp absorption at the zero energy in the long wavelength limit by using the single mode approximation. The photon energy absorption rate at the NG mode frequency strongly depends ...

  8. Characteristics of superior soybean breeding lines tolerance to rust (Phakopsora pachyrhizi Syd.

    Directory of Open Access Journals (Sweden)

    Alfi Inayati

    2016-04-01

    Full Text Available Soybean rust caused by Phakopsora pachyrhizi is one of the most important diseases which limits soybean production. The aim of this study was to evaluate the resistance of 28 superior soybean lines and their tolerance to rust. The study was conducted at a screen house and arranged in a completely randomized design (CRD; three replications. All genotypes tested were artificially inoculated with P. pachyrhizi, and a set of un-inoculated genotypes was planted as a comparison. Number of pustules was recorded weekly, and resistant criteria was rated based on the International working group on soybean rust IWGSR method. Lesion color (LC, sporulation level (SL, number of uredia (NoU, frequency of pustule which had uredia, and yield were also recorded. Among 28 genotypes tested, only one was categorized as resistant and 2 genotypes were susceptible. Resistant genotypes had few pustules, lower AUDPC values, low disease severity, and Reddish Brown lesion type. Soybean rust affected yield components, i.e. number of intact pods and yield per plant. Yield loses due to rust in this study varied from 5-89%, and the average was 51%. The set of lines from Tanggamus pedigree showed more resistant to rust but less tolerant compared to Sinabung pedigree.How to CiteInayati, A., & Yusnawan, E. (2016. Characteristics of superior soybean breeding lines tolerancet to rust (Phakopsora pachyrhizi Syd.. Biosaintifika: Journal of Biology & Biology Education, 8(1, 47-55.

  9. A consensus map for Ug99 stem rust resistance loci in wheat

    OpenAIRE

    Yu, Long-Xi; Barbier, Hugues; Rouse, Matthew N.; Singh, Sukhwinder; Singh, Ravi P.; Bhavani, Sridhar; Huerta-Espino, Julio; Sorrells, Mark E.

    2014-01-01

    Key message This consensus map of stem rust genes, QTLs, and molecular markers will facilitate the identification of new resistance genes and provide a resource of in formation for development of new markers for breeding wheat varieties resistant to Ug99. Abstract The global effort to identify new sources of resistance to wheat stem rust, caused by Puccinia graminis f. sp. tritici race group Ug99 has resulted in numerous studies reporting both qualitative genes and quantitative trait loci. Th...

  10. The genome sequence and effector complement of the flax rust pathogen Melampsora lini

    OpenAIRE

    Nemri, Adnane; Saunders, Diane G O; Anderson, Claire; Upadhyaya, Narayana M.; Win, Joe; Lawrence, Gregory J.; Jones, David A.; Kamoun, Sophien; Ellis, Jeffrey G.; Dodds, Peter N.

    2014-01-01

    Rust fungi cause serious yield reductions on crops, including wheat, barley, soybean, coffee, and represent real threats to global food security. Of these fungi, the flax rust pathogen Melampsora lini has been developed most extensively over the past 80 years as a model to understand the molecular mechanisms that underpin pathogenesis. During infection, M. lini secretes virulence effectors to promote disease. The number of these effectors, their function and their degree of conservation acros...

  11. Archaeophytopathology of Global Soybean Rust

    Science.gov (United States)

    Phakopsora pachyrhizi and P. meibomiae are two rust species that infect soybean (Glycine max). A number of other hosts support the uredinial growth of these Phakopsora, including Pachyrhizus erosus, Pueraria lobata, and Vigna unguiculata, but no aecial host is known. Traditionally, these two species...

  12. LMFBR thermal-striping evaluation

    International Nuclear Information System (INIS)

    Thermal striping is defined as the fluctuating temperature field that is imposed on a structure when fluid streams at different temperatures mix in the vicinity of the structure surface. Because of the uncertainty in structural damage in LMFBR structures subject to thermal striping, EPRI has funded an effort for the Rockwell International Energy Systems Group to evaluate this problem. This interim report presents the following information: (1) a Thermal Striping Program Plan which identifies areas of analytic and experimental needs and presents a program of specific tasks to define damage experienced by ordinary materials of construction and to evaluate conservatism in the existing approach; (2) a description of the Thermal Striping Test Facility and its operation; and (3) results from the preliminary phase of testing to characterize the fluid environment to be applied in subsequent thermal striping damage experiments

  13. Nonhost resistance of rice to rust pathogens.

    Science.gov (United States)

    Ayliffe, Michael; Devilla, Rosangela; Mago, Rohit; White, Rosemary; Talbot, Mark; Pryor, Anthony; Leung, Hei

    2011-10-01

    Rice is atypical in that it is an agricultural cereal that is immune to fungal rust diseases. This report demonstrates that several cereal rust species (Puccinia graminis f. sp tritici, P. triticina, P. striiformis, and P. hordei) can infect rice and produce all the infection structures necessary for plant colonization, including specialized feeding cells (haustoria). Some rust infection sites are remarkably large and many plant cells are colonized, suggesting that nutrient uptake occurs to support this growth. Rice responds with an active, nonhost resistance (NHR) response that prevents fungal sporulation and that involves callose deposition, production of reactive oxygen species, and, occasionally, cell death. Genetic variation for the efficacy of NHR to wheat stem rust and wheat leaf rust was observed. Unlike cereal rusts, the rust pathogen (Melampsora lini) of the dicotyledenous plant flax (Linum usitatissimum) rarely successfully infects rice due to an apparent inability to recognize host-derived signals. Morphologically abnormal infection structures are produced and appressorial-like structures often don't coincide with stomata. These data suggest that basic compatibility is an important determinate of nonhost infection outcomes of rust diseases on cereals, with cereal rusts being more capable of infecting a cereal nonhost species compared with rust species that are adapted for dicot hosts. PMID:21899436

  14. Assessing the variability of Red Stripe Disease in Louisiana sugarcane using precision agriculture methods

    Science.gov (United States)

    Symptoms of red stripe disease caused by Acidovorax avenae subsp. avenae in Louisiana between 1985 and 2010 were limited to the leaf stripe form which caused no apparent yield loss. During 2010, the more severe top rot form was observed, and a study was initiated to investigate the distribution of r...

  15. Progress Towards Genetics and Breeding for Minor Genes Based Resistance to Ug99 and Other Rusts in CIMMYT High-Yielding Spring Wheat

    Institute of Scientific and Technical Information of China (English)

    Ravi Prakash Singh; Sybil Herrera-Foessel; Julio Huerta-Espino; Sukhwinder Singh; Sridhar Bhavani; Caixia Lan; and Bhoja Raj Basnet

    2014-01-01

    Wheat rusts continue to cause signiifcant losses worldwide despite major efforts given to their genetic control. This is due to frequent evolution and selection of virulence in pathogen overcoming the deployed race-speciifc resistance genes. Although the life of effective race-speciifc resistance genes can be prolonged by using gene combinations, an alternative approach being implemented at CIMMYT is to deploy varieties that posses adult plant resistance (APR) based on combinations of minor, slow rusting genes. When present alone, the APR genes do not confer adequate resistance especially under high disease pressure; however, combinations of 4 or 5 minor genes usually result in “near-immunity” or a high level of resistance. Although only a few APR genes are catalogued, various APR QTLs are now known and could lead to further characterization of additional genes. Four characterized genes have pleiotropic effects in conferring partial APR to all 3 rusts and powdery mildew, thus simplifying the task of breeding wheat varieties that are resistant to multiple diseases. Signiifcant progress was made recently in developing high-yielding wheat germplasm that possesses high levels of APR to all three rusts by implementing a Mexico-Kenya shuttle breeding scheme. Parents with APR to Ug99 were hybridized with high-yielding parents that had adequate to high levels of APR to leaf rust and yellow rust. Segregating populations and advanced lines from these crosses were selected under high rust pressures in Mexico (leaf rust and yellow rust) and Kenya (Ug99 stem rust and yellow rust) to identify high-yielding progenies that possess high to adequate APR to all three rusts. International distribution of these high-yielding wheats is underway through CIMMYT international yield trials and screening nurseries. It is expected that several wheat varieties with APR to three rusts will be released and grown in various countries in the near-future that will allow determining the

  16. 75 FR 29191 - Black Stem Rust; Additions of Rust-Resistant Varieties

    Science.gov (United States)

    2010-05-25

    ... Animal and Plant Health Inspection Service 7 CFR Part 301 Black Stem Rust; Additions of Rust-Resistant Varieties AGENCY: Animal and Plant Health Inspection Service, USDA. ACTION: Direct final rule. SUMMARY: We...-resistant Berberis species or cultivars and 2 varieties to the list of rust-resistant Mahonia species...

  17. 78 FR 27855 - Black Stem Rust; Additions of Rust-Resistant Species and Varieties

    Science.gov (United States)

    2013-05-13

    ... Animal and Plant Health Inspection Service 7 CFR Part 301 Black Stem Rust; Additions of Rust-Resistant Species and Varieties AGENCY: Animal and Plant Health Inspection Service, USDA. ACTION: Direct final rule... list of rust-resistant Berberis species and varieties and one variety to the list of...

  18. STRIPE: Remote Driving Using Limited Image Data

    Science.gov (United States)

    Kay, Jennifer S.

    1997-01-01

    Driving a vehicle, either directly or remotely, is an inherently visual task. When heavy fog limits visibility, we reduce our car's speed to a slow crawl, even along very familiar roads. In teleoperation systems, an operator's view is limited to images provided by one or more cameras mounted on the remote vehicle. Traditional methods of vehicle teleoperation require that a real time stream of images is transmitted from the vehicle camera to the operator control station, and the operator steers the vehicle accordingly. For this type of teleoperation, the transmission link between the vehicle and operator workstation must be very high bandwidth (because of the high volume of images required) and very low latency (because delayed images can cause operators to steer incorrectly). In many situations, such a high-bandwidth, low-latency communication link is unavailable or even technically impossible to provide. Supervised TeleRobotics using Incremental Polyhedral Earth geometry, or STRIPE, is a teleoperation system for a robot vehicle that allows a human operator to accurately control the remote vehicle across very low bandwidth communication links, and communication links with large delays. In STRIPE, a single image from a camera mounted on the vehicle is transmitted to the operator workstation. The operator uses a mouse to pick a series of 'waypoints' in the image that define a path that the vehicle should follow. These 2D waypoints are then transmitted back to the vehicle, where they are used to compute the appropriate steering commands while the next image is being transmitted. STRIPE requires no advance knowledge of the terrain to be traversed, and can be used by novice operators with only minimal training. STRIPE is a unique combination of computer and human control. The computer must determine the 3D world path designated by the 2D waypoints and then accurately control the vehicle over rugged terrain. The human issues involve accurate path selection, and the

  19. Abnormal relationship between rust particles size and rust layer compactness of weathering steels

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    In order to reveal evolution of the rust layer during atmospheric corrosion,commercial weathering steel(WS) 09CuPCrNi and a recently developed bainite WS were subjected to a salt fog test.The protection and compactness of the rust layer were evaluated by electrochemical analysis,absorption-desorption test,etc.The experimental results indicate that more compact rust layer could be derived from the rust particles with larger size.The well-established notion that the rust particle growth can induce the decreme...

  20. Emerging Yr26-virulent races of Puccinia striiformis f. sp. tritici are threatening the wheat production in the Sichuan Basin, China

    Science.gov (United States)

    Stripe rust, caused by Puccinia striiformis f. sp. tritici , is one of the most destructive diseases of wheat in the world. The Sichuan Basin is one of the most important regions of wheat production and stripe rust epidemics in China. Stripe rust resistance gene Yr26 (the same gene as Yr24) has bee...

  1. Relationship of Soil Properties and Sugarcane Yields to Red Stripe in Louisiana.

    Science.gov (United States)

    Johnson, Richard M; Grisham, Michael P; Warnke, Kathryn Z; Maggio, Jeri R

    2016-07-01

    Symptoms of red stripe disease caused by Acidovorax avenae subsp. avenae in Louisiana between 1985 and 2010 were limited to the leaf stripe form, which caused no apparent yield loss. During 2010, the more severe top rot form was observed, and a study was initiated to investigate the distribution of red stripe in the field and determine its effects on cane and sugar yields. Soil properties data, red stripe incidence, and sugarcane yields were all highly variable and were not randomly distributed in the field. Combined harvest data showed a negative correlation between yield components and red stripe incidence, with the strongest relationship between sucrose per metric ton and disease incidence. Red stripe incidence was positively correlated with several soil properties, including phosphorus, potassium, zinc, and calcium. Red stripe incidence also was found to increase with increasing nitrogen rate, with the greatest effects in heavy soils. Results also indicated that using red-stripe-infected cane as a seed source can significantly decrease shoot emergence, stalk population, and subsequent cane and sugar yields. These combined data suggest that red stripe disease can exhibit a highly variable rate of infection in commercial sugarcane fields and may also significantly decrease sugar yields. PMID:27003508

  2. Strategies for improving rust resistance in oats

    International Nuclear Information System (INIS)

    During the history of breeding oats for rust resistance in Canada the known sources of resistance proved inadequate to counter the virulence potential of both stem rust (Puccinia graminis avenae) and crown rust (P. coronata avenae). A major programme to overcome the rust problem was undertaken at Winnipeg, involving four alternate approaches: (1) A search for new resistance in wild oat species, particularly Avena sterilis, has provided a wealth of good resistance to crown rust, but less to stem rust. Much of the A. sterilis-derived crown rust resistance is now being used world-wide; (2) Efforts at synthesizing new resistance by mutation breeding methods have not been successful. Of about seven million plants examined, only one showed significant new resistance, but this was associated with poor plant type; (3) Resistance with low levels of expression but which appears broadly effective has been observed against both stem and crown rusts. It appears that numbers of these low-level genes exist, and that they can be accumulated to provide increasingly effective resistance. Problems in using this type of resistance in a practical way are discussed; (4) Excellent rust resistance has been found in lower ploidy species such as A. barbata, but it was not previously possible to stabilize this resistance in hexaploid species. By using mutagenic treatments attempts have been made to translocate smaller portions of the A. barbata chromosome carrying the resistance to the hexaploid cultivar Rodney. In conclusion, mutation breeding methods at present appear to have limited application in synthesizing new rust-resistant genotypes in oats. The search for already existing genetic resistance and its synthesis into multi-genic resistant lines appears to be the most effective way at present of resolving the rust problem in oats. (author)

  3. Using hierarchical clustering of secreted protein families to classify and rank candidate effectors of rust fungi.

    Science.gov (United States)

    Saunders, Diane G O; Win, Joe; Cano, Liliana M; Szabo, Les J; Kamoun, Sophien; Raffaele, Sylvain

    2012-01-01

    Rust fungi are obligate biotrophic pathogens that cause considerable damage on crop plants. Puccinia graminis f. sp. tritici, the causal agent of wheat stem rust, and Melampsora larici-populina, the poplar leaf rust pathogen, have strong deleterious impacts on wheat and poplar wood production, respectively. Filamentous pathogens such as rust fungi secrete molecules called disease effectors that act as modulators of host cell physiology and can suppress or trigger host immunity. Current knowledge on effectors from other filamentous plant pathogens can be exploited for the characterisation of effectors in the genome of recently sequenced rust fungi. We designed a comprehensive in silico analysis pipeline to identify the putative effector repertoire from the genome of two plant pathogenic rust fungi. The pipeline is based on the observation that known effector proteins from filamentous pathogens have at least one of the following properties: (i) contain a secretion signal, (ii) are encoded by in planta induced genes, (iii) have similarity to haustorial proteins, (iv) are small and cysteine rich, (v) contain a known effector motif or a nuclear localization signal, (vi) are encoded by genes with long intergenic regions, (vii) contain internal repeats, and (viii) do not contain PFAM domains, except those associated with pathogenicity. We used Markov clustering and hierarchical clustering to classify protein families of rust pathogens and rank them according to their likelihood of being effectors. Using this approach, we identified eight families of candidate effectors that we consider of high value for functional characterization. This study revealed a diverse set of candidate effectors, including families of haustorial expressed secreted proteins and small cysteine-rich proteins. This comprehensive classification of candidate effectors from these devastating rust pathogens is an initial step towards probing plant germplasm for novel resistance components. PMID:22238666

  4. Using hierarchical clustering of secreted protein families to classify and rank candidate effectors of rust fungi.

    Directory of Open Access Journals (Sweden)

    Diane G O Saunders

    Full Text Available Rust fungi are obligate biotrophic pathogens that cause considerable damage on crop plants. Puccinia graminis f. sp. tritici, the causal agent of wheat stem rust, and Melampsora larici-populina, the poplar leaf rust pathogen, have strong deleterious impacts on wheat and poplar wood production, respectively. Filamentous pathogens such as rust fungi secrete molecules called disease effectors that act as modulators of host cell physiology and can suppress or trigger host immunity. Current knowledge on effectors from other filamentous plant pathogens can be exploited for the characterisation of effectors in the genome of recently sequenced rust fungi. We designed a comprehensive in silico analysis pipeline to identify the putative effector repertoire from the genome of two plant pathogenic rust fungi. The pipeline is based on the observation that known effector proteins from filamentous pathogens have at least one of the following properties: (i contain a secretion signal, (ii are encoded by in planta induced genes, (iii have similarity to haustorial proteins, (iv are small and cysteine rich, (v contain a known effector motif or a nuclear localization signal, (vi are encoded by genes with long intergenic regions, (vii contain internal repeats, and (viii do not contain PFAM domains, except those associated with pathogenicity. We used Markov clustering and hierarchical clustering to classify protein families of rust pathogens and rank them according to their likelihood of being effectors. Using this approach, we identified eight families of candidate effectors that we consider of high value for functional characterization. This study revealed a diverse set of candidate effectors, including families of haustorial expressed secreted proteins and small cysteine-rich proteins. This comprehensive classification of candidate effectors from these devastating rust pathogens is an initial step towards probing plant germplasm for novel resistance components.

  5. Sexual structures and recombination of the wheat rust fungus Puccinia striiformis on Berberis vulgaris.

    Science.gov (United States)

    Rodriguez-Algaba, Julian; Walter, Stephanie; Sørensen, Chris K; Hovmøller, Mogens S; Justesen, Annemarie F

    2014-09-01

    An isolate of the basidiomycete Puccinia striiformis, which causes yellow (stripe) rust on wheat, was selfed on the newly discovered alternate host, Berberis vulgaris. This allowed a study of the segregation of molecular markers and virulence in the progeny isolates, and of the development of fungal sexual structures and spore forms. Pycnia and aecia were obtained after inoculation of B. vulgaris with basidiospores resulting from germinating teliospores from infected wheat leaves. Subsequent inoculation of wheat with aeciospores from bulked aecia resulted in 16 progeny isolates of the S1 generation. Genotyping with 42 simple sequence repeat (SSR) markers confirmed a parental origin of progeny isolates. Of the 42 analyzed loci, 15 were heterozygous in the parental isolate and 14 revealed segregation in the progenies. This resulted in 11 new multilocus genotypes (MLGs), which confirmed segregation following sexual reproduction. Additionally, parental and progeny isolates were phenotyped using a genetic stock of wheat genotypes representing 21 resistance genes. All S1 progeny isolates had virulence for 14 out of 15 loci where the parental isolate was virulent. This was consistent with the hypothesis that virulence in plant pathogens is often recessive to avirulence, i.e., only expressed in a homozygous state. Furthermore, no segregation was observed for five out of six loci, for which the parental isolate had an avirulent phenotype. The results for one of the two segregating virulence/avirulence loci suggested that the parental isolate was heterozygous with Avr alleles resulting in different but clearly avirulent phenotypes. The other locus indicated that additional genes modifying the phenotypic expression of avirulence were involved. PMID:25042987

  6. Finite element simulation for damage detection of surface rust in steel rebars using elastic waves

    Science.gov (United States)

    Tang, Qixiang; Yu, Tzuyang

    2016-04-01

    Steel rebar corrosion reduces the integrity and service life of reinforced concrete (RC) structures and causes their gradual and sudden failures. Early stage detection of steel rebar corrosion can improve the efficiency of routine maintenance and prevent sudden failures from happening. In this paper, detecting the presence of surface rust in steel rebars is investigated by the finite element method (FEM) using surface-generated elastic waves. Simulated wave propagation mimics the sensing scheme of a fiber optic acoustic generator mounted on the surface of steel rebars. Formation of surface rust in steel rebars is modeled by changing material's property at local elements. In this paper, various locations of a fiber optic acoustic transducer and a receiver were considered. Megahertz elastic waves were used and different sizes of surface rust were applied. Transient responses of surface displacement and pressure were studied. It is found that surface rust is most detectable when the rust location is between the transducer and the receiver. Displacement response of intact steel rebar is needed in order to obtain background-subtracted response with a better signal-to-noise ratio. When the size of surface rust increases, reduced amplitude in displacement was obtained by the receiver.

  7. Screening oat populations for rust resistant mutants

    International Nuclear Information System (INIS)

    In 1972 a two million M2 plants were grown at Morden, Manitoba. Thirteen plants which were thought to have possible resistance to race CI0 of oat stem rust were harvested. After extensive seedling and adult plant rust tests the best of the selected plant progenies was crossed and backcrossed to Rodney 0, a stem rust susceptible oat. The resistance in this line M-72-6 was found to be controlled by a single gene. In 1973 another two million M2 plants were examined for rust resistance at Morden and 38 were harvested. None of the M2 plants selected in 1973 appeared to have any seedling or adult resistance when examined more thoroughly in the greenhouse and again in the field in 1974. In 1974 one million M2 plants were examined for resistance and 73 selected. None appeared to have any resistance when tested further. The strain CI3034 which was good adult plant stem rust resistance associated with weak straw and a light green plant colour was treated with gamma radiation and EMS in 1973 and the M2 grown in the C10 rust nursery at Morden in 1974. A considerable number of dark green plants were present in all treatments but unfortunately all were found to be stem rust susceptible. Thus it would appear to be difficult if not impossible to separate the rust resistance in CI3034 from the undesirable characters, weak straw and light green plant colour. (author)

  8. Mapping of the oat crown rust resistance gene Pc91.

    Science.gov (United States)

    McCartney, C A; Stonehouse, R G; Rossnagel, B G; Eckstein, P E; Scoles, G J; Zatorski, T; Beattie, A D; Chong, J

    2011-02-01

    Crown rust is an important disease of oat caused by Puccinia coronata Corda f. sp. avenae Eriks. Crown rust is efficiently and effectively managed through the development of resistant oat varieties. Pc91 is a seedling crown rust resistance gene that is highly effective against the current P. coronata population in North America. The primary objective of this study was to develop DNA markers linked to Pc91 for purposes of marker-assisted selection in oat breeding programs. The Pc91 locus was mapped using a population of F7-derived recombinant inbred lines developed from the cross 'CDC Sol-Fi'/'HiFi' made at the Crop Development Centre, University of Saskatchewan. The population was evaluated for reaction to P. coronata in field nurseries in 2008 and 2009. Pc91 mapped to a linkage group consisting of 44 Diversity Array Technology (DArT) markers. DArTs were successfully converted to sequence characterized amplified region (SCAR) markers. Five robust SCARs were developed from three non-redundant DArTs that co-segregated with Pc91. SCAR markers were developed for different assay systems, such that SCARs are available for agarose gel electrophoresis, capillary electrophoresis, and Taqman single nucleotide polymorphism detection. The SCAR markers accurately postulated the Pc91 status of 23 North American oat breeding lines. PMID:20862449

  9. Image processing methods for quantitatively detecting soybean rust from multispectral images

    Science.gov (United States)

    Soybean rust, caused by Phakopsora pachyrhizi, is one of the most destructive diseases for soybean production. It often causes significant yield loss and may rapidly spread from field to field through airborne urediniospores. In order to implement timely fungicide treatments for the most effective c...

  10. Changing the game: using integrative genomics to probe virulence mechanisms of the stem rust pathogen Puccinia graminis f. sp. tritici

    OpenAIRE

    Melania eFigueroa; Narayana Mithur Upadhyaya; Jana eSperschneider; Robert ePark; Les eSzabo; Brian eSteffenson; Jeffrey eEllis; Peter eDodds

    2016-01-01

    The recent resurgence of wheat stem rust caused by new virulent races of Puccinia graminis f. sp. tritici (Pgt) poses a threat to food security. These concerns have catalyzed an extensive global effort towards controlling this disease. Substantial research and breeding programs target the identification and introduction of new stem rust resistance (Sr) genes in cultivars for genetic protection against the disease. Such resistance genes typically encode immune receptor proteins that recognize ...

  11. Changing the Game: Using Integrative Genomics to Probe Virulence Mechanisms of the Stem Rust Pathogen Puccinia graminis f. sp. tritici

    OpenAIRE

    Figueroa, Melania; Upadhyaya, Narayana M.; Sperschneider, Jana; Park, Robert F.; Szabo, Les J.; Steffenson, Brian; Ellis, Jeff G.; Dodds, Peter N.

    2016-01-01

    The recent resurgence of wheat stem rust caused by new virulent races of Puccinia graminis f. sp. tritici (Pgt) poses a threat to food security. These concerns have catalyzed an extensive global effort toward controlling this disease. Substantial research and breeding programs target the identification and introduction of new stem rust resistance (Sr) genes in cultivars for genetic protection against the disease. Such resistance genes typically encode immune receptor proteins that recognize s...

  12. Susceptibility to Rust (Puccinia Sp.) in Cultivars of Italian and Perennial Ryegrass Grown in Two Locations of Italy

    OpenAIRE

    Luigi Russi; Massimo Romani; Luciano Pecetti

    2011-01-01

    A large set of foreign varieties of Italian ryegrass (Lolium multiflorum) and perennial ryegrass (L. perenne) were evaluated for their response to natural rust infection in two Italian locations (Lodi in the north; Perugia in the centre of the country) at three-year intervals in 2001, 2004 and 2007, to acquire information on novel germplasm for Italy and verify any spatial and temporal variation in the varietal response to the disease. Crown rust (caused by Puccinia coronata) on Italian ryegr...

  13. Identification of Green Rust in Groundwater

    DEFF Research Database (Denmark)

    Christiansen, Bo C.; Balic Zunic, Tonci; Dideriksen, Knud;

    2009-01-01

    to air. In this paper, we present a sampling method for capturing green rust so it is not oxidized. We then we used the method to identify the compound in a groundwater sample taken below the water table from fractures in granite. X-ray diffraction patterns were weak, but clearly identical to those...... be identified. Currently, transport models for predicting the behavior of contaminants in groundwater do not include parameters for green rust. This work demonstrates they should....

  14. Rust Inhibitor And Fungicide For Cooling Systems

    Science.gov (United States)

    Adams, James F.; Greer, D. Clay

    1988-01-01

    Mixture of benzotriazole, benzoic acid, and fungicide prevents growth of rust and fungus. Water-based cooling mixture made from readily available materials prevents formation of metallic oxides and growth of fungi in metallic pipes. Coolant remains clear and does not develop thick sludge tending to collect in low points in cooling systems with many commercial rust inhibitors. Coolant compatible with iron, copper, aluminum, and stainless steel. Cannot be used with cadmium or cadmium-plated pipes.

  15. Modelos de ponto crítico para estimar danos causados pela ferrugem da folha da aveia branca Critical yield models to estimate the damage caused by leaf rust in white oat

    Directory of Open Access Journals (Sweden)

    Erlei Melo Reis

    2008-09-01

    Full Text Available Em experimentos conduzidos no campo, nas safras agrícolas de 1995 e 1996, gerou-se o gradiente da intensidade da ferrugem da folha da aveia branca, cultivar UPF 13, pela aplicação nos órgãos aéreos de doses crescentes do fungicida triadimenol. As equações das funções de dano foram obtidas pela correlação entre o rendimento de grãos e a incidência da doença em diferentes estádios fenológicos da cultura. Na safra de 1995 as equações obtidas foram R= 2.103,5 - 17,983I e R= 2.404,6 - 12,832I, respectivamente para alongamento e emborrachamento, e em 1996, R= 3.889,2 - 27,871I e R= 5.366,4 - 20,999I, respectivamente para emborrachamento e floração (R= rendimento de grãos e I= incidência foliar. Estas equações, contendo o coeficiente de dano, permitem calcular o limiar de dano econômico (LDE tomado como critério indicador do momento para o início do controle químico da ferrugem da folha da aveia. As reduções no rendimento de grãos, no peso do hectolitro e no peso de mil sementes, atingiram, respectivamente 57,13%, 16,64% e 21,49% na safra 1995 e 19,79%, 13,39% e 16,33%, na safra 1996.In field experiments carried out in the 1995 and 1996 growing seasons, the gradient of leaf rust intensity on the white oat cultivar UPF 13 was generated by spraying the above ground plant parts of the crop with different rates of the fungicide triadimenol. Damage equations were obtained relating grain yield and disease incidence at different growing stages. In the 1995 growing season the equations were: R= 2,103.5 -17.983I and R= 2,404.6 - 12.832I, for elongation and boot stage, respectively, and for 1996, R= 3,889.2 - 27.871I and R= 5,366.4 - 20.999I (where R= grain yield; I= disease as foliar incidence, for booting and flowering stages respectively. These equations, having the damage coefficient, may be used to calculate the economic damage threshold (LDE as a criterion to indicate the moment for the fungicide application to control leaf

  16. Avaliação da tolerância de cultivares de soja à ferrugem asiática no oeste da Bahia Tolerance assessment of soybean cultivars to Asian rust caused by Phakopsora pachyrhizi in western Bahia

    Directory of Open Access Journals (Sweden)

    Ana C. B. de Oliveira

    2005-12-01

    Full Text Available A utilização de tolerância como forma de controle da ferrugem da soja (Glycine max, causada pelo fungo Phakopsora pachyrhizi, pode ser uma alternativa viável, visto que a resistência qualitativa tem-se mostrado instável, em função da variabilidade do fungo. Este trabalho foi realizado na região oeste da Bahia, na safra 2003/04, com objetivo de avaliar a tolerância das principais cultivares de soja utilizadas na região. Foram avaliadas quatro cultivares de ciclo precoce [MG/BR 46 (Conquista, Emgopa 315, BRS Corisco e M-SOY 8411] e quatro cultivares de ciclo tardio (BRS Barreiras, M-SOY 9350, FT 106 e BRS Sambaíba. A tolerância foi quantificada pela diferença de produtividade entre subparcelas tratadas e não tratadas com fungicida. As cultivares MG/BR 46 (Conquista e M-SOY 8411 apresentaram diferenças de rendimento não significativas, no entanto, essa característica não pôde ser atribuída à tolerância, em função da baixa severidade observada no ensaio. Essa diferença pôde ser atribuída a escape, uma vez que, no momento em que a ferrugem obteve valores mais elevados de severidade, as duas cultivares já estavam na fase final de desenvolvimento. Embora a severidade máxima observada no ensaio tenha sido baixa (30,5% para a cultivar BRS Barreiras, com exceção das cultivares MG/BR 46 (Conquista e M-SOY 8411, as demais cultivares avaliadas apresentaram diferença significativa entre as subparcelas tratadas e não tratadas com fungicida, mostrando ausência de tolerância das principais cultivares comerciais cultivadas no oeste da Bahia. Neste trabalho, foi observado que as cultivares de ciclo precoce apresentaram reduções de produtividade inferiores às de ciclo tardio.The use of tolerance as a form of control for soybean rust can be a viable alternative, since qualitative resistance has been shown to be unstable in function of fungal variability. This trial was carried out at in western Bahia in 2003/04, with the

  17. Tagging and mapping of SSR marker for rust resistance gene in lentil (Lens culinaris Medikus subsp. culinaris).

    Science.gov (United States)

    Dikshit, H K; Singh, Akanksha; Singh, D; Aski, M; Jain, Neelu; Hegde, V S; Basandrai, A K; Basandrai, D; Sharma, T R

    2016-06-01

    Lentil, as an economical source of protein, minerals and vitamins, plays important role in nutritional security of the common man. Grown mainly in West Asia, North Africa (WANA) region and South Asia, it suffers from several biotic stresses such as wilt, rust, blight and broomrape. Lentil rust caused by autoecious fungus Uromyces viciae fabae (Pers.) Schroet is a serious lentil disease in Algeria, Bangladesh, Ethiopia, India, Italy, Morocco, Pakistan and Nepal. The disease symptoms are observed during flowering and early podding stages. Rust causes severe yield losses in lentil. It can only be effectively controlled by identifying the resistant source, understanding its inheritance and breeding for host resistance. The obligate parasitic nature of pathogen makes it difficult to maintain the pathogen in culture and to apply it to screen segregating progenies under controlled growth conditions. Hence, the use of molecular markers will compliment in identification of resistant types in different breeding programs. Here, we studied the inheritance of resistance to rust in lentil using F₁, F₂ and F₂:₃ from cross PL 8 (susceptible) x L 4149 (resistant) varieties. The phenotyping of lentil population was carried out at Sirmour, India. The result of genetic analysis revealed that a single dominant gene controls rust resistance in lentil genotype L 4149. The F2 population from this cross was used to tag and map the rust resistance gene using SSR and SRAP markers. Markers such as 270 SRAP and 162 SSR were studied for polymorphism and 101 SRAP and 33 SSRs were found to be polymorphic between the parents. Two SRAP and two SSR markers differentiated the resistant and susceptible bulks. SSR marker Gllc 527 was estimated to be linked to rust resistant locus at a distance of 5.9 cM. The Gllc 527 marker can be used for marker assisted selection for rust resistance; however, additional markers closer to rust resistant locus are required. The markers linked to the rust

  18. Leaf rust resistance in wheat line RL6062 is an allele at the Lr3 locus

    Science.gov (United States)

    RL6062, a 'Thatcher' backcross line of wheat (Triticum aestivum L.) has resistance to leaf rust (caused by Puccinia triticina) derived from a line of common wheat from Iran. RL6062 has an intermediate infection type (IT) of small to moderate uredinia surrounded by distinct chlorosis. RL6062 was cros...

  19. Effects of the mycoparasite Sphaerellopsis filum on overwintering survival of stem rust in perennial ryegrass

    Science.gov (United States)

    Sphaerellopsis filum is a mycoparasite of Puccinia graminis subsp. graminicola (Pgg), a rust fungus that causes widespread crop damage on perennial ryegrass grown for seed. In observations taken over the winters of 2000-2003 S. filum was found in 10% of Pgg uredinia on 1st year plantings of perennia...

  20. URS Brava – a new oat cultivar with partial resistance to crown rust

    Directory of Open Access Journals (Sweden)

    Luiz Carlos Federizzi

    2015-08-01

    Full Text Available The cultivar URS Brava, obtained from a simple cross between the line ‘UFRGS 995078-2’ and the cultivar ‘URS 21’, shows high grain yield and stability, high grain quality, desirable agronomical traits and partial resistance to crown rust, caused by the fungus Puccinia coronata f. sp. avenae.

  1. Genome Wide Association Analysis of Leaf Rust Response in a Worldwide Germplasm Collection of Durum Wheat

    Science.gov (United States)

    Leaf rust (caused by Puccinia triticina Eriks.) is increasingly impacting durum wheat production with the recent appearance of races with virulence to widely grown cultivars in many durum producing areas worldwide. A highly virulent P. triticina race on durum wheat was recently collected in Kansas....

  2. Molecular mapping of R11, a novel rust resistance gene in sunflower (Helianthus annuus L.)

    Science.gov (United States)

    Sunflower production in North America has recently been threatened by the evolution of new virulent pathotypes of sunflower rust caused by the fungus Puccinia helianthi Schwein. Rf ANN-1742, an ‘HA 89’ backcross restorer line derived from wild annual sunflower (Helianthus annuus L), was identified a...

  3. First report of soybean rust (Phakopsora pachyrhizi) on Florida beggarweed (Desmodium tortuosum) in Alabama

    Science.gov (United States)

    Soybean rust, caused by the fungus Phakopsora pachyrhizi, was detected on Florida Beggarweed (Desmodium tortuosum) for the first time in Alabama in November, 2009. The pathogen was observed on plants collected from a field at the Wiregrass Research and Extension Center in Headland, Alabama located i...

  4. Label-Free Detection of Soybean Rust Spores using Photonic Crystal Biosensors

    Science.gov (United States)

    Soybean rust, caused by the fungus Phakopsora pachyrhizi, is one of the most devastating foliar diseases affecting soybeans grown worldwide. The disease was reported for the first time in the United States in 2004. Early spore detection, prior to the appearance of visible symptoms, is critical to ef...

  5. Pairing theory of striped superconductivity

    International Nuclear Information System (INIS)

    Striped high-Tc superconductors such as La7/8Ba1/8CuO4 show a fascinating competition between spin and charge order on the one hand and superconductivity on the other. A theory for these systems therefore has to capture both the spin correlations in an antiferromagnet and the pair-correlation of a superconductor. For this purpose we have developed an effective Hartree-Fock theory by merging electron pairing with finite center-of-mass momentum and antiferromagnetism. We show that this theory reproduces the key experimental features such as the formation of the antiferromagnetic stripe patterns at 7/8 band filling or the quasi one-dimensional electronic structure observed by photoemission spectroscopy.

  6. Orange rust: A new surgarcane disease in Florida

    Science.gov (United States)

    Orange rust of sugarcane was observed approximately 5 miles east of Belle Glade, Florida on CP 80-1743 (a complex hybrid of Sacharum L. species) during the lsat week of June 2007. Orange rust pustules are cinnamon-orange in color, oval and smaller than the darker brown elongate rust pustules of the ...

  7. Striped ratio grids for scatter estimation

    Science.gov (United States)

    Hsieh, Scott S.; Wang, Adam S.; Star-Lack, Josh

    2016-03-01

    Striped ratio grids are a new concept for scatter management in cone-beam CT. These grids are a modification of conventional anti-scatter grids and consist of stripes which alternate between high grid ratio and low grid ratio. Such a grid is related to existing hardware concepts for scatter estimation such as blocker-based methods or primary modulation, but rather than modulating the primary, the striped ratio grid modulates the scatter. The transitions between adjacent stripes can be used to estimate and subtract the remaining scatter. However, these transitions could be contaminated by variation in the primary radiation. We describe a simple nonlinear image processing algorithm to estimate scatter, and proceed to validate the striped ratio grid on experimental data of a pelvic phantom. The striped ratio grid is emulated by combining data from two scans with different grids. Preliminary results are encouraging and show a significant reduction of scatter artifact.

  8. Guidelines for the production, evaluation, and use of induced resistance to stripe rust in wheat

    International Nuclear Information System (INIS)

    A disease resistance mutation breeding programme should include: Planning; treatment and culture of the M1; isolation of probable genetic variants; selection and evaluation of potentially useful mutants; and use of the selected mutants. Considerations made and actions taken during each step may influence the chances for success. Mutation breeding for plant improvement may require a long-term programme. As in any conventional breeding approach, mutation breeding should complement rather than substitute for other approaches. Guidelines for the induction and selection of non-specific or general types of disease resistance, which is more difficult to identify and possibly more durable, are emphasized. (author)

  9. Molecular mapping of stripe rust resistance gene Yr51 in chromosome 4AL of wheat

    Czech Academy of Sciences Publication Activity Database

    Randhawa, M.; Bansal, U.; Valárik, Miroslav; Klocová, Barbora; Doležel, Jaroslav; Bariana, H.

    2014-01-01

    Roč. 127, č. 2 (2014), s. 317-324. ISSN 0040-5752 R&D Projects: GA ČR GAP501/10/1740; GA MŠk(CZ) LO1204 Institutional support: RVO:61389030 Keywords : TRITICUM - AESTIVUM L. * DIVERSITY ARRAYS * MAP Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 3.790, year: 2014

  10. The barley stem rust-resistance gene Rpg1 is a novel disease-resistance gene with homology to receptor kinases

    OpenAIRE

    Brueggeman, R.; Rostoks, N.; Kudrna, D.; Kilian, A.; Han, F.; Chen, J; Druka, A.; Steffenson, B.; Kleinhofs, A

    2002-01-01

    Stem rust caused by Puccinia graminis f. sp. tritici was among the most devastating diseases of barley in the northern Great Plains of the U.S. and Canada before the deployment of the stem rust-resistance gene Rpg1 in 1942. Since then, Rpg1 has provided durable protection against stem rust losses in widely grown barley cultivars (cvs.). Extensive efforts to clone Rpg1 by synteny with rice provided excellent flanking markers but failed to yield the gene because it does ...

  11. Finite Element Analysis Of Thermal Transients In Multi-Stripe Laser Diode Arrays

    Science.gov (United States)

    Lippincott, Wendy L.; Clement, Anne E.

    1989-05-01

    The NASTRAN finite element code was used to simulate the temperature transients in the active area of laser diode arrays caused by driving the array with a pulsed waveform. A ten-stripe multi-quantum-well (MQW) structure was used. The thermal impedance of the array was also determined and compared to experimental values obtained by monitoring the threshold dependance of the device during pulsed and cw operation. The single-stripe diode was also modeled for comparison purposes.

  12. [Comparative Research on Estimating the Severity of Yellow Rust in Winter Wheat].

    Science.gov (United States)

    Wang, Jing; Jing, Yuan-shu; Huang, Wen-jiang; Zhang, Jing-cheng; Zhao, Juan; Zhang, Qing; Wang, Li

    2015-06-01

    In order to improve the accuracy of wheat yellow rust disease severity using remote sensing and to find the optimum inversion model of wheat diseases, the canopy reflectance and disease index (DI) of winter wheat under different severity stripe rust were acquired. The three models of PLS (Partial Least Square), BP neural network using seven hyperspectral vegetation indices which have significant relationship with the occurrence of disease and vegetation index (PRI) were adopted to build a feasible regression model for detecting the disease severity. The results showed that PLS performed much better. The inversion accuracy of PLS method is best than of the VI (PRI, Photochemical Reflectance Index) and BP neural network models. The coefficients of determination (R2) of three methods to estimate disease severity between predicted and measured values are 0.936, 0.918 and 0.767 respectively. Evaluation was made between the estimated DI and the measured DI, indicating that the model based on PLS is suitable for monitoring wheat disease. In addition, to explore the different contributions of diverse types of vegetation index to the models, the paper attempts to use NDVI, GNDVI and MSR which on behalf of vegetation greenness and NDWI and MSI that represents the moisture content to be input variables of PLS model. The results showed that, for the wheat yellow rust disease, changes in chlorophyll content is more sensitive to the disease severity than the changes in water content of the canopy. However, the accuracy of the two models are both lower than predicted when participating in all seven vegetation indices, namely using several species of vegetation indices tends to be more accurate than that using single category. It indicated that it has great potential for evaluating wheat disease severity by using hyper-spectral remote sensing. PMID:26601384

  13. Gene discovery in EST sequences from the wheat leaf rust fungus Puccinia triticina sexual spores, asexual spores and haustoria, compared to other rust and corn smut fungi

    OpenAIRE

    Wynhoven Brian; Mayo Michael; Munro Sarah; Banks Travis; Anikster Yehoshua; Eilam Tamar; Donaldson Michael E; Joly David L; Antonov Ivan; Zhu Wenhan; Dickinson Matthew; Fellers John; Linning Rob; Xu Junhuan; Ali Johar

    2011-01-01

    Abstract Background Rust fungi are biotrophic basidiomycete plant pathogens that cause major diseases on plants and trees world-wide, affecting agriculture and forestry. Their biotrophic nature precludes many established molecular genetic manipulations and lines of research. The generation of genomic resources for these microbes is leading to novel insights into biology such as interactions with the hosts and guiding directions for breakthrough research in plant pathology. Results To support ...

  14. Genetic Analysis and Molecular Tagging a Novel Yellow Rust Resistance Gene Derived from Synthetic Hexaploid Wheat Germplasm M08

    Institute of Scientific and Technical Information of China (English)

    CHEN Guo-yue; LI Li-hui

    2008-01-01

    Yellow rust of wheat(caused by Puccinia striiformis Westend.f sp.tritici Eriks.)has been periodically epidemic and severely damaged wheat production in China.The development of resistant cultivars could be an effective way to reduce yield losses of wheat caused by yellow rust.Rust reaction tests and genetic analysis indicated that M08,the synthetic hexaploid wheat derived from hybridization between Triticum durum(2n=6X=28;genome AABB)and Aegilops tauschii (2n=2X=14;genome DD),showed resistance to current prevailing yellow rust races at seedling stage,which was controlled by a single dominant gene,designated as YrAm.Bulked segregant analysis was used to identify microsatellite markers linked to gene YrAm in an F2 population derived from cross M08(resistant)×Jinan 17(susceptible).Three microsatellite marker loci Xgwm77,Xgwm285,and Xgwm131 located on chromosome 3B were mapped to the YrAm locus. Xgwm131 was the closest marker locus and showed a linkage distance of 7.8 cM to the resistance locus.Thus,it is assumed that YrAm for resistance to yellow rust may be derived from Triticum durum and is located on the long arm of chromosome 3B.

  15. Susceptibility to Rust (Puccinia Sp. in Cultivars of Italian and Perennial Ryegrass Grown in Two Locations of Italy

    Directory of Open Access Journals (Sweden)

    Luciano Pecetti

    2011-02-01

    Full Text Available A large set of foreign varieties of Italian ryegrass (Lolium multiflorum and perennial ryegrass (L. perenne were evaluated for their response to natural rust infection in two Italian locations (Lodi in the north; Perugia in the centre of the country at three-year intervals in 2001, 2004 and 2007, to acquire information on novel germplasm for Italy and verify any spatial and temporal variation in the varietal response to the disease. Crown rust (caused by Puccinia coronata on Italian ryegrass and stem rust (caused by P. graminis on perennial rygrass were consistently recorded in appreciable amount (average susceptibility score > 2.0 on a 1-9 scale. Vice-versa, crown rust on perennial and stem rust on Italian ryegrass seldom affected appreciably the crop. Strong interactions of variety response (to the prevailing pathogen with locations and years of evaluation were observed in both ryegrasses. Subsequently, the repeatability of results between locations, or between years within locations, as measured by rank correlations of variety scores, was sometimes only moderate or low. However, despite such interactions, a few promising varieties were identified in each species with consistently low susceptibility across evaluation environments, which deserve further investigation for a possible direct utilisation, or as donors of useful genes for breeding purposes.

  16. Cytological and molecular analysis of nonhost resistance in rice to wheat powdery mildew and leaf rust pathogens.

    Science.gov (United States)

    Cheng, Yulin; Yao, Juanni; Zhang, Hongchang; Huang, Lili; Kang, Zhensheng

    2015-07-01

    Cereal powdery mildews caused by Blumeria graminis and cereal rusts caused by Puccinia spp. are constant disease threats that limit the production of almost all important cereal crops. Rice is an intensively grown agricultural cereal that is atypical because of its immunity to all powdery mildew and rust fungi. We analyzed the nonhost interactions between rice and the wheat powdery mildew fungus B. graminis f. sp. tritici (Bgt) and the wheat leaf rust fungus Puccinia triticina (Ptr) to identify the basis of nonhost resistance (NHR) in rice against cereal powdery mildew and rust fungi at cytological and molecular levels. No visible symptoms were observed on rice leaves inoculated with Bgt or Ptr. Microscopic observations showed that both pathogens exhibited aberrant differentiation and significantly reduced penetration frequencies on rice compared to wheat. The development of Bgt and Ptr was also completely arrested at early infection stages in cases of successful penetration into rice leaves. Attempted infection of rice by Bgt and Ptr induced similar defense responses, including callose deposition, accumulation of reactive oxygen species, and hypersensitive response in rice epidermal and mesophyll cells, respectively. Furthermore, a set of defense-related genes were upregulated in rice against Bgt and Ptr infection. Rice is an excellent monocot model for genetic and molecular studies. Therefore, our results demonstrate that rice is a useful model to study the mechanisms of NHR to cereal powdery mildew and rust fungi, which provides useful information for the development of novel and durable strategies to control these important pathogens. PMID:25547964

  17. Susceptibility to Rust (Puccinia Sp. in Cultivars of Italian and Perennial Ryegrass Grown in Two Locations of Italy

    Directory of Open Access Journals (Sweden)

    Luigi Russi

    2009-03-01

    Full Text Available A large set of foreign varieties of Italian ryegrass (Lolium multiflorum and perennial ryegrass (L. perenne were evaluated for their response to natural rust infection in two Italian locations (Lodi in the north; Perugia in the centre of the country at three-year intervals in 2001, 2004 and 2007, to acquire information on novel germplasm for Italy and verify any spatial and temporal variation in the varietal response to the disease. Crown rust (caused by Puccinia coronata on Italian ryegrass and stem rust (caused by P. graminis on perennial rygrass were consistently recorded in appreciable amount (average susceptibility score > 2.0 on a 1-9 scale. Vice-versa, crown rust on perennial and stem rust on Italian ryegrass seldom affected appreciably the crop. Strong interactions of variety response (to the prevailing pathogen with locations and years of evaluation were observed in both ryegrasses. Subsequently, the repeatability of results between locations, or between years within locations, as measured by rank correlations of variety scores, was sometimes only moderate or low. However, despite such interactions, a few promising varieties were identified in each species with consistently low susceptibility across evaluation environments, which deserve further investigation for a possible direct utilisation, or as donors of useful genes for breeding purposes.

  18. Modification of tolerance of oats to crown rust induced by chemical mutagens

    International Nuclear Information System (INIS)

    Seeds of crown rust (Puccinia coronata) susceptible cultivated oats (Avena sativa) were treated with the mutagenic chemical ethyl methanesulphonate (EMS), and pure lines derived from these treated seeds were tested in later generations for the relative amount of reduction in yield and seed weight caused by crown rust infection. In the absence of crown rust, the yield of most of the treated lines was greatly reduced. The overall means of the treated lines for both yield and seed weight response to infection were significantly lower than the control, but 10 lines significantly exceeded the control for yield response and 15 exceeded it for seed weight response. Recurrent EMS treatment of once-treated lines rated as tolerant resulted in groups of lines that were more tolerant, on the average, than groups of lines from recurrently treated lines rated as susceptible. A few of the recurrently treated individual lines derived from tolerant parents had a higher degree of tolerance than their parental lines. EMS treatment of diploid (A. strigosa) and tetraploid (A. abyssinica) oats resulted in groups of lines showing significant genetic variance for response to crown rust, indicating that treatment had induced real genetic change. A few diploid lines were a little more tolerant than their control, but none of the tetraploid lines showed any consistent improvement. (author)

  19. Possibility of cereals protection against rusts by resistant breeding method

    Directory of Open Access Journals (Sweden)

    Czesław Zamorski

    2013-12-01

    Full Text Available In the years 1999-2001 field trials were run on susceptibility of wheat and triticale genotypes to infection by three rust fungi (Puccinia recondita, Puccinia graminis, Puccinia striiformis. The results of the observation of the infection level in following years have been similar. Among genotypes of winter wheat, breeding lines susceptible to Puccinia striiformis infection were rare, but among spring wheat 50% of genotypes were susceptible to yellow rust infection. A much higher level of sensitivity than in the case of winter wheat has been found in winter triticale genotypes. Wheat genotypes were distinguished by the high sensitivity to Puccinia graminis infection, only a few breeding lines were resistant to stem rust. The susceptibility of wheat to brown rust (Puccinia recondita was a common feature. Triticale genotypes compared to wheat were affected significantly less and majority of them exhibited high level of resistant to brown rust. The use of the breeding method has justification in control yellow rust of winter wheat. Recommended cultivars are almost all fully resistant to Puccinia striiformis infection. The application of this method in selection of spring wheat and triticale is in large past limited. Some of the registered cultivars of spring wheat and triticale are very susceptible to yellow rust. Using the breeding method to protect wheat from stem rust and brown rust is of little practical benefit in our county at this moment. But it can be effecive to control stem and brown rusts of triticale.

  20. Major Gene for Field Stem Rust Resistance Co-Locates with Resistance Gene Sr12 in ‘Thatcher’ Wheat

    Science.gov (United States)

    Hiebert, Colin W.; Kolmer, James A.; McCartney, Curt A.; Briggs, Jordan; Fetch, Tom; Bariana, Harbans; Choulet, Frederic; Rouse, Matthew N.; Spielmeyer, Wolfgang

    2016-01-01

    Stem rust, caused by Puccinia graminis (Pgt), is a damaging disease of wheat that can be controlled by utilizing effective stem rust resistance genes. ‘Thatcher’ wheat carries complex resistance to stem rust that is enhanced in the presence of the resistance gene Lr34. The purpose of this study was to examine APR in ‘Thatcher’ and look for genetic interactions with Lr34. A RIL population was tested for stem rust resistance in field nurseries in Canada, USA, and Kenya. BSA was used to find SNP markers associated with reduced stem rust severity. A major QTL was identified on chromosome 3BL near the centromere in all environments. Seedling testing showed that Sr12 mapped to the same region as the QTL for APR. The SNP markers were physically mapped and the region carrying the resistance was searched for sequences with homology to members of the NB-LRR resistance gene family. SNP marker from one NB-LRR-like sequence, NB-LRR3 co-segregated with Sr12. Two additional populations, including one that lacked Lr34, were tested in field nurseries. NB-LRR3 mapped near the maximum LOD for reduction in stem rust severity in both populations. Lines from a population that segregated for Sr12 and Lr34 were tested for seedling Pgt biomass and infection type, as well as APR to field stem rust which showed an interaction between the genes. We concluded that Sr12, or a gene closely linked to Sr12, was responsible for ‘Thatcher’-derived APR in several environments and this resistance was enhanced in the presence of Lr34. PMID:27309724

  1. Major Gene for Field Stem Rust Resistance Co-Locates with Resistance Gene Sr12 in 'Thatcher' Wheat.

    Science.gov (United States)

    Hiebert, Colin W; Kolmer, James A; McCartney, Curt A; Briggs, Jordan; Fetch, Tom; Bariana, Harbans; Choulet, Frederic; Rouse, Matthew N; Spielmeyer, Wolfgang

    2016-01-01

    Stem rust, caused by Puccinia graminis (Pgt), is a damaging disease of wheat that can be controlled by utilizing effective stem rust resistance genes. 'Thatcher' wheat carries complex resistance to stem rust that is enhanced in the presence of the resistance gene Lr34. The purpose of this study was to examine APR in 'Thatcher' and look for genetic interactions with Lr34. A RIL population was tested for stem rust resistance in field nurseries in Canada, USA, and Kenya. BSA was used to find SNP markers associated with reduced stem rust severity. A major QTL was identified on chromosome 3BL near the centromere in all environments. Seedling testing showed that Sr12 mapped to the same region as the QTL for APR. The SNP markers were physically mapped and the region carrying the resistance was searched for sequences with homology to members of the NB-LRR resistance gene family. SNP marker from one NB-LRR-like sequence, NB-LRR3 co-segregated with Sr12. Two additional populations, including one that lacked Lr34, were tested in field nurseries. NB-LRR3 mapped near the maximum LOD for reduction in stem rust severity in both populations. Lines from a population that segregated for Sr12 and Lr34 were tested for seedling Pgt biomass and infection type, as well as APR to field stem rust which showed an interaction between the genes. We concluded that Sr12, or a gene closely linked to Sr12, was responsible for 'Thatcher'-derived APR in several environments and this resistance was enhanced in the presence of Lr34. PMID:27309724

  2. Bulk temperature measurement in thermally striped pipe flows

    International Nuclear Information System (INIS)

    The hot leg flows in some Pressurized Water Reactor (PWR) designs have a temperature distribution across the pipe cross-section. This condition is often referred to as a thermally striped flow. Here, the bulk temperature measurement of pipe flows with thermal striping is explored. An experiment is conducted to examine the feasibility of using temperature measurements on the external surface of the pipe to estimate the bulk temperature of the flow. Simple mixing models are used to characterize the development of the temperature profile in the flow. Simple averaging techniques and Backward Propagating Neural Net are used to predict bulk temperature from the external temperature measurements. Accurate bulk temperatures can be predicted. However, some temperature distributions in the flow effectively mask the bulk temperature from the wall and cause significant error in the bulk temperature predicted using this technique

  3. Are stripes beneficial? Dazzle camouflage influences perceived speed and hit rates.

    Directory of Open Access Journals (Sweden)

    Bettina von Helversen

    Full Text Available In the animal kingdom, camouflage refers to patterns that help potential prey avoid detection. Mostly camouflage is thought of as helping prey blend in with their background. In contrast, disruptive or dazzle patterns protect moving targets and have been suggested as an evolutionary force in shaping the dorsal patterns of animals. Dazzle patterns, such as stripes and zigzags, are thought to reduce the probability with which moving prey will be captured by impairing predators' perception of speed. We investigated how different patterns of stripes (longitudinal-i.e., parallel to movement direction-and vertical-i.e., perpendicular to movement direction affect the probability with which humans can hit moving objects and if differences in hitting probability are caused by a misperception of speed. A first experiment showed that longitudinally striped objects were hit more often than unicolored objects. However, vertically striped objects did not differ from unicolored objects. A second study examining the link between perceived speed and hitting probability showed that longitudinally and vertically striped objects were both perceived as moving faster and were hit more often than unicolored objects. In sum, our results provide evidence that striped patterns disrupt the perception of speed, which in turn influences how often objects are hit. However, the magnitude and the direction of the effects depend on additional factors such as speed and the task setup.

  4. Fine Mapping of RppP25, a Southern Rust Resistance Gene in Maize

    Institute of Scientific and Technical Information of China (English)

    Panfeng Zhao; Guobin Zhang; Xiaojun Wu; Na Li; Dianyi Shi; Dengfeng Zhang; Chunfang Ji

    2013-01-01

    Southern rust (Puccinia polysora Underw.) is a major disease that can cause severe yield losses in maize (Zea mays L.).In our previous study,a major gene RppP25 that confers resistance to southern rust was identified in inbred line P25.Here,we report the fine mapping and candidate gene analysis of RppP25from the near-isogenic line F939,which harbors RppP25 in the genetic background of the susceptible inbred line F349.The inheritance of resistance to southern rust was investigated in the BC1F1 and BC3F1 populations,which were derived from a cross between F939 and F349 (as the recurrent parent).The 1:1 segregation ratio of resistance to susceptible plants in these two populations indicated that the resistance is controlled by a single dominant gene.Ten markers,including three simple sequence repeat (SSR) markers and seven insertion/deletion (InDel) markers,were developed in the RppP25 region.RppP25 was delimited to an interval between P091 and M271,with an estimated length of 40 kb based on the physical map of B73.In this region,a candidate gene was identified that was predicted to encode a putative nucleotide-binding site leucine-rich repeat (NBS-LRR) protein.Two co-segregated markers will aid in pyramiding diverse southern rust resistance alleles into elite materials,and thereby improve southern rust resistance worldwide.

  5. Genome size estimates for six rust (Pucciniales) species

    OpenAIRE

    Talhinhas, Pedro; Ramos, Ana Paula; Tavares, Daniela; Tavares, Sílvia; Loureiro, João

    2015-01-01

    Rust fungi (Basidiomycota, Pucciniales), one of the largest groups of phytopathogenic organisms, are characterised by host specialisation, biotrophy, complex life cycles and enlarged genomes. In this work we have used flow cytometry to determine the genome size of six rust species, Melampsora pulcherrima, Puccinia behenis, P. cichorii, P. pimpinellae, P. vincae and Uromyces dianthi, the causal agents of rust on Mercurialis annua, Silene latifolia, Cichorium intybus, Pimpinella villos...

  6. Identification of markers linked to the race Ug99 effective stem rust resistance gene Sr28 in wheat (Triticum aestivum L.).

    Science.gov (United States)

    Rouse, Matthew N; Nava, Itamar C; Chao, Shiaoman; Anderson, James A; Jin, Yue

    2012-09-01

    Wheat stem rust caused by Puccinia graminis f. sp. tritici can cause devastating yield losses in wheat. Over the past several decades, stem rust has been controlled worldwide through the use of genetic resistance. Stem rust race TTKSK (Ug99), first detected in Uganda in 1998, threatens global wheat production because of its unique virulence combination. As the majority of the currently grown cultivars and advanced breeding lines are susceptible to race TTKSK, sources of resistance need to be identified and characterized to facilitate their use in agriculture. South Dakota breeding line SD 1691 displayed resistance to race TTKSK in the international wheat stem rust nursery in Njoro, Kenya. Seedling screening of progeny derived from SD 1691 crossed to susceptible LMPG-6 indicated that a single resistance gene was present. Allelism and race-specificity tests indicated the stem rust resistance gene in SD 1691 was Sr28. The chromosome arm location of Sr28 was previously demonstrated to be 2BL. We identified molecular markers linked to Sr28 and validated this linkage in two additional populations. Common spring wheat cultivars in the central United States displayed allelic diversity for markers flanking Sr28. These markers could be used to select for Sr28 in breeding populations and for combining Sr28 with other stem rust resistance genes. PMID:22584633

  7. Theoretical studies on the mechanisms of laser rust removal

    Science.gov (United States)

    Wang, Yupei; Zhang, Zunyue; Liu, Guigeng; Song, Feng

    2016-05-01

    Our studies introduce the three-layer model of laser rust removal by rotational mirror scanner and develop dry laser cleaning model Firstly, theoretically simulate the temperature field of the rotational mirror scanner. Use the superposition model of the instantaneous thermal source point from a point to a line, from a line to an area, to simulate the temperature field distribution of rust and iron with thermal source on its surface and how it varies with time. And then take the temperature field distribution of rotational mirror scanner as the thermal load and use ANSYS to solve the thermal conductivity equations with complicated boundary conditions, and calculate the temperature field distribution it can be found that the temperature of the rust surface reaches the melting even the boiling point of the rust, so the rust can be removed by the ablation effect. From the thermal stress distribution of rust and iron in the depth orientation, the thermal stress existed in the rust and iron is large enough to remove the last rust layer in one time. So ablation layer, thermal stress removal layer and substrate consist of the three-layer model of laser rust removal by rotational mirror scanner.

  8. EFFECT OF STEM RUST INFECTION ON GRAIN YIELD AND YIELD COMPONENTS OF SOME WHEAT CULTIVARS IN EGYPT

    OpenAIRE

    Mamdouh A. Asmmawy; Walid M. El-Orabey; Mohamed Nazim; Atef A. Shahin

    2013-01-01

    Stem rust, caused by Puccinia graminis f. sp. tritici is an important disease of wheat worldwide. To estimate grain yield losses due to stem rust, replicated experiments including twelve wheat cultivars i.e.  Gemmeiza 7, Gemmeiza 9, Gemmeiza 10, Gemmeiza 11, Sakha 61, Sakha 93, Sakha 94, Sids 12, Sids 13, Giza 168, Misr 1 and Misr 2 were evaluated for adult plant resistance at Sakha Research Station, Kafr El-Sheikh, Egypt during 2011/12 and 2012/13 growing seasons. The field experiment was su...

  9. Ultrafast charge localization in a stripe-phase nickelate

    Energy Technology Data Exchange (ETDEWEB)

    Coslovich, Giacomo; Huber, Bernhard; Lee, Wei-Sheng; Sasagawa, Takao; Hussain, Zahid; Bechtel, Hans A.; Martin, Michael C.; Shen, Zhi-Xun; W. Schoenlein, Robert; A. Kaindl, Robert

    2013-08-30

    Self-organized electronically-ordered phases are a recurring feature in correlated materials, resulting in e.g. fluctuating charge stripes whose role in high-Tc superconductivity is under debate. However, the relevant cause-effect relations between real-space charge correlations and low-energy excitations remain hidden in time-averaged studies. Here, we reveal ultrafast charge localization and lattice vibrational coupling as dynamical precursors of stripe formation in the model compound La1.75Sr0.25NiO4, using ultrafast and equilibrium mid-infrared spectroscopy. The opening of a pseudogap at a crossover temperature T* far above long-range stripe formation establishes the onset of electronic localization which is accompanied by an enhanced Fano asymmetry of Ni-O stretch vibrations. Ultrafast excitation triggers a sub-picosecond dynamics exposing the synchronous modulation of electron-phonon coupling and charge localization. These results illuminate the role of localization in forming the pseudogap in nickelates, opening a path to understanding this mysterious phase in a broad class of complex oxides.

  10. STRIPES AND SUPERCONDUCTIVITY IN CUPRATE SUPERCONDUCTORS

    Energy Technology Data Exchange (ETDEWEB)

    TRANQUADA, J.M.

    2005-08-22

    One type of order that has been observed to compete with superconductivity in cuprates involves alternating charge and antiferromagnetic stripes. Recent neutron scattering studies indicate that the magnetic excitation spectrum of a stripe-ordered sample is very similar to that observed in superconducting samples. In fact, it now appears that there may be a universal magnetic spectrum for the cuprates. One likely implication of this universal spectrum is that stripes of a dynamic form are present in the superconducting samples. On cooling through the superconducting transition temperature, a gap opens in the magnetic spectrum, and the weight lost at low energy piles up above the gap; the transition temperature is correlated with the size of the spin gap. Depending on the magnitude of the spin gap with respect to the magnetic spectrum, the enhanced magnetic scattering at low temperature can be either commensurate or incommensurate. Connections between stripe correlations and superconductivity are discussed.

  11. Identification of wheat gene Sr35 that confers resistance to Ug99 stem rust race group.

    Science.gov (United States)

    Saintenac, Cyrille; Zhang, Wenjun; Salcedo, Andres; Rouse, Matthew N; Trick, Harold N; Akhunov, Eduard; Dubcovsky, Jorge

    2013-08-16

    Wheat stem rust, caused by Puccinia graminis f. sp. tritici (Pgt), is a devastating disease that can cause severe yield losses. A previously uncharacterized Pgt race, designated Ug99, has overcome most of the widely used resistance genes and is threatening major wheat production areas. Here, we demonstrate that the Sr35 gene from Triticum monococcum is a coiled-coil, nucleotide-binding, leucine-rich repeat gene that confers near immunity to Ug99 and related races. This gene is absent in the A-genome diploid donor and in polyploid wheat but is effective when transferred from T. monococcum to polyploid wheat. The cloning of Sr35 opens the door to the use of biotechnological approaches to control this devastating disease and to analyses of the molecular interactions that define the wheat-rust pathosystem. PMID:23811222

  12. Leaf stripe resistance of spring barley cultivars

    OpenAIRE

    Pinnschmidt, Hans O; Nielsen, Bent J.

    2006-01-01

    Results of six years of screening trials clearly indicate that effective resistance against barley leaf stripe is available, also in modern cultivars. Among the spring barley cultivars that are currently most widely grown in Denmark, Cabaret, Troon, Sebastian, Justina and Brazil appear most resistant, but only Brazil combines a favourable resistance performance (= low mean and standard deviation of environment-adjusted leaf stripe incidence) with a high number of observations (= years of test...

  13. Assessing the Effects of Suomi NPP VIIRS M15/M16 Detector Radiometric Stability and Relative Spectral Response Variation on Striping

    Directory of Open Access Journals (Sweden)

    Zhuo Wang

    2016-02-01

    Full Text Available Modern satellite radiometers have many detectors with different relative spectral response (RSR. Effect of RSR differences on striping and the root cause of striping in sensor data record (SDR radiance and brightness temperature products have not been well studied. A previous study used MODTRAN radiative transfer model (RTM to analyze striping. In this study, we make efforts to find the possible root causes of striping. Line-by-Line RTM (LBLRTM is used to evaluate the effect of RSR difference on striping and the atmospheric dependency for VIIRS bands M15 and M16. The results show that previous study using MODTRAN is repeatable: the striping is related to the difference between band-averaged and detector-level RSR, and the BT difference has some atmospheric dependency. We also analyzed VIIRS earth view (EV data with several striping index methods. Since the EV data is complex, we further analyze the onboard calibration data. Analysis of Variance (ANOVA test shows that the noise along track direction is the major reason for striping. We also found evidence of correlation between solar diffuser (SD and blackbody (BB for detector 1 in M15. Digital Count Restoration (DCR and detector instability are possibly related to the striping in SD and EV data, but further analysis is needed. These findings can potentially lead to further SDR processing improvements.

  14. Stock characteristics of Hudson River striped bass

    International Nuclear Information System (INIS)

    Striped bass, because of their tremendous popularity both commercially and recreationally, were a principal focus of the Hudson River power plant case. Between 1976 and 1979, over 23,000 age-II and older striped bass were studied as one facet of an extensive research program on the spring population in the Hudson River. Samples were collected from the overwintering as well as the spawning portion of the striped bass population, and included immature as well as mature fish. At least 12 age-groups contributed to spawning each year. Of these 12, age-groups III, IV, and V usually were most abundant, but the percentage of the population represented by any single age-group varied as the result of fluctuations in year-class strength. Males first became sexually mature at age II and females at age IV. Fast-growing individuals within a year class tended to mature earlier. Fecundity increased with the size of fish, reaching an observed maximum of about 3 million eggs per female. Although significant annual variations in maturity and growth were detected for Hudson River striped bass, there was no evidence of a consistent change in either variable that might be associated with increasing power plant operations and a reduction in striped bass abundance. Age at maturity and age structure are the two life history components that differ the most between the Hudson River population and other striped bass populations. 36 refs., 7 tabs

  15. Waste management regroups units into Rust International

    International Nuclear Information System (INIS)

    Three Waste Management (Oak Brook, IL) subsidiaries have proposed merging units from Chemical Waste Management (CWM) and Wheelabrator Technologies with the Brand Companies (Park Ridge, IL). Waste Management says the new company, to be called Rust International, will become one of the US's largest environmental consulting and infrastructure organizations and will include design and construction services. Waste Management expects the merged company's 1993 revenues to reach $1.8 billion. It will be based in Birmingham, AL and have 12,000 employees

  16. Modeling Blister Rust Incidence in Whitebark Pine at Northern Rocky Mountain Alpine Treelines: A Geospatial Approach

    OpenAIRE

    Smith, Emily Katherine

    2009-01-01

    The status of whitebark pine (Pinus albicaulis), a foundation and keystone species and a pioneer establisher at alpine treeline, is threatened by the invasive and exotic fungal pathogen (Cronartium ribicola) that causes white pine blister rust in five-needled pines. Originally thought to be limited to moderate environments, the disease is now found extensively throughout colder and dryer regions east of the Continental Divide, including alpine treeline. My research objective was to determine ...

  17. Structural studies on the development of soybean rust (Phakopsora pachyrhizi Syd.) in susceptible soybean leaves

    International Nuclear Information System (INIS)

    Where soybeans are cultivated in the tropics, soybean rust may cause heavy crop losses. Resistance found so far was only of local and temporary value. More substantial breeding efforts are needed, but these may require a better understanding of the pathogen's biology and evolutionary capacity, the infection process and the host-pathogen relationships. The report deals with the infection process and the development of the fungus in a susceptible host variety. (author)

  18. Control of Wheat Rust by Leaves Extract of Poisonous Phanergamic Plants

    OpenAIRE

    Muhammad Ayoub; Aman Ullah Niazi

    2001-01-01

    Wheat rust caused by Puccinia recondita was controlled by leaf extract of poisonous phanerogamic plants. Leave extract of 4 poisonous phanerogamic plants, Narium odorum, Calotropis gigantea, Azadirachta indica and Datura strimonium have 40. 60, 45. 45, 56.96 and 81.81% decrease of disease over control respectively. Whereas fungicide Baytan decrease the disease 84.84% which is at par with Datura strimonium.

  19. Sugarcane brown rust – determining genetic variation in the pathogen and identifying potential novel sources of resistance

    Science.gov (United States)

    A major reason for the withdrawal of sugarcane cultivars from production in is the breakdown of resistance to brown rust caused by Puccinia melanaocephala. Genetic characterization of diversity among races of P. melanocephala would help in breeding for resistance to the pathogen. Breeding for durabl...

  20. Molecular Mapping of Adult-Plant Race-Specific Leaf Rust Resistance Gene Lr12 in Bread Wheat

    Science.gov (United States)

    Wheat (Triticum aestivum) gene Lr12 provides adult-plant race-specific resistance to leaf rust caused by Puccinia triticina. It is completely linked or identical to Lr31, which confers seedling resistance only when the complementary gene Lr27 is also present. F2 and F2-derived F3 families were devel...

  1. Registration of a male fertility restorer oilseed sunflower germplasm HA-R9 resistant to sunflower rust

    Science.gov (United States)

    The sunflower (Helianthus annuus L.) germplasm HA-R9 (Reg. No.xxx, PI 667595) was developed by the USDA-ARS, Sunflower and Plant Biology Research Unit in collaboration with the Agricultural Experiment Station of North Dakota State University and released in January, 2013. Sunflower rust (caused by P...

  2. Lr68: a new gene conferring slow rusting resistance to leaf rust in wheat.

    Science.gov (United States)

    Herrera-Foessel, Sybil A; Singh, Ravi P; Huerta-Espino, Julio; Rosewarne, Garry M; Periyannan, Sambasivam K; Viccars, Libby; Calvo-Salazar, Violeta; Lan, Caixia; Lagudah, Evans S

    2012-05-01

    The common wheat cultivar Parula possesses a high level of slow rusting, adult plant resistance (APR) to all three rust diseases of wheat. Previous mapping studies using an Avocet-YrA/Parula recombinant inbred line (RIL) population showed that APR to leaf rust (Puccinia triticina) in Parula is governed by at least three independent slow rusting resistance genes: Lr34 on 7DS, Lr46 on 1BL, and a previously unknown gene on 7BL. The use of field rust reaction and flanking markers identified two F(6) RILs, Arula1 and Arula2, from the above population that lacked Lr34 and Lr46 but carried the leaf rust resistance gene in 7BL, hereby designated Lr68. Arula1 and Arula2 were crossed with Apav, a highly susceptible line from the cross Avocet-YrA/Pavon 76, and 396 F(4)-derived F(5) RILs were developed for mapping Lr68. The RILs were phenotyped for leaf rust resistance for over 2 years in Ciudad Obregon, Mexico, with a mixture of P. triticina races MBJ/SP and MCJ/SP. Close genetic linkages with several DNA markers on 7BL were established using 367 RILs; Psy1-1 and gwm146 flanked Lr68 and were estimated at 0.5 and 0.6 cM, respectively. The relationship between Lr68 and the race-specific seedling resistance gene Lr14b, located in the same region and present in Parula, Arula1 and Arula2, was investigated by evaluating the RILs with Lr14b-avirulent P. triticina race TCT/QB in the greenhouse. Although Lr14b and Lr68 homozygous recombinants in repulsion were not identified in RILs, γ-irradiation-induced deletion stocks that lacked Lr68 but possessed Lr14b showed that Lr68 and Lr14b are different loci. Flanking DNA markers that are tightly linked to Lr68 in a wide array of genotypes can be utilized for selection of APR to leaf rust. PMID:22297565

  3. Stem rust spores elicit rapid RPG1 phosphorylation

    Science.gov (United States)

    Stem rust threatens cereal production worldwide. Understanding the mechanism by which durable resistance genes, such as Rpg1, function is critical. We show that the RPG1 protein is phosphorylated within 5 min by exposure to spores from avirulent but not virulent races of stem rust. Transgenic mutant...

  4. Green rusts in electrochemical and microbially influenced corrosion of steel

    Science.gov (United States)

    Refait, Philippe; Abdelmoula, Mustapha; Génin, Jean-Marie R.; Sabot, René

    2006-06-01

    Green rusts have been identified as corrosion products of steel in neutral or slightly alkaline aqueous media. They were mainly observed in carbonated media, where the carbonated green rust is obtained, and in seawater, where the sulphated variety is obtained. In the first case, the formation of the carbonated green rust competes with that of siderite FeCO 3. It is favoured when the dissolution of iron is accompanied by the reduction of dissolved oxygen and the formation of OH - ions. In the second case, the formation of the sulphated variety competes with that of the chlorinated variety. The sulphated green rust is obtained since the layered structure of green rusts is characterised by a strong affinity for divalent anions. Finally, the oxidation of green rusts leads to the various constituents of 'common' rust. The conditions favouring the formation of a ferric compound keeping the crystal structure of green rusts is discussed. To cite this article: P. Refait et al., C. R. Geoscience 338 (2006).

  5. 75 FR 54461 - Black Stem Rust; Additions of Rust-Resistant Varieties

    Science.gov (United States)

    2010-09-08

    ... subject is placed under a screen with a control plant--a known rust-susceptible species of Berberis... / Wednesday, September 8, 2010 / Rules and Regulations#0;#0; ] DEPARTMENT OF AGRICULTURE Animal and Plant...: Animal and Plant Health Inspection Service, USDA. ACTION: Direct final rule. SUMMARY: We are amending...

  6. Investigation on subcellular localization of Rice stripe virus in its vector small brown planthopper by electron microscopy

    OpenAIRE

    Deng, Jinhua; Li, Shuo; Hong, Jian; Ji, Yinghua; Zhou, Yijun

    2013-01-01

    Background Rice stripe virus (RSV), which is transmitted by small brown planthopper (Laodelphax striatellus Fallén, SBPH), has been reported to be epidemic and cause severe rice stripe disease in rice fields in many East Asian countries, including China. Investigation on viral localization in the vector is very important for elucidating transmission mechanisms of RSV by SBPH. In this study, transmission electron microscopy and immuno-gold labeling technique were used to investigate the subcel...

  7. Néel coupling in Co/Cu/Co stripes with unidirectional interface roughness

    International Nuclear Information System (INIS)

    We investigate the influence of interlayer Néel coupling on the magnetization reversal processes in epitaxial Co(5 nm)/Cu(5 nm)/Co(5 nm) stripes by experimental methods and computer modeling. The stripes with a width of 900 and 1800 nm were formed on a step-bunched Si(111) substrate by molecular beam epitaxy and focused ion beam etching. Uniaxial magnetic anisotropy with the easy axis of the magnetization along the steps is induced in the stripes by the steps of the Si(111) substrate. The stepped structure of the layers in the multilayered stripes reproduces the morphology of the Si(111) substrate. Néel coupling between the Co layers is realized due to the unidirectional roughness at the Co/Cu interfaces caused by the steps of the substrate. Interlayer Néel coupling at the interfaces overcomes antiparallel magnetostatic interaction realized through the sides of the Co layers in the trilayered stripes. We used a modified Néel model in the simulation of the magnetization reversal in the multilayered system with unidirectional interface roughness. The surface energy of Néel coupling was spatially varied against the direction of the magnetization relative to the step edge. The results of micromagnetic simulations of the Co/Cu/Co stripes with spatially non-uniform and averaged surface energies of interlayer Néel coupling are compared and discussed. - Highlights: • We investigated Co/Cu/Co stripes with unidirectional roughness at the interfaces. • Results obtained by MOKE and MFM are compared to micromagnetic simulations. • A modified Néel model was used in the micromagnetic simulation of the Co/Cu/Co system. • The surface energy of Néel coupling depends on the direction of the magnetization

  8. Evaporation of elongated droplets on chemically stripe-patterned surfaces

    NARCIS (Netherlands)

    Jansen, H.P.; Zandvliet, H.J.W.; Kooij, E.S.

    2015-01-01

    We investigate the evaporation of elongated droplets on chemically striped patterned surfaces. Variation of elongation is achieved by depositing droplets on surfaces with varying ratios of hydrophobic and hydrophilic stripe widths. Elongated droplets evaporate faster than more spherical droplets. Bo

  9. Accuracy improvement in laser stripe extraction for large-scale triangulation scanning measurement system

    Science.gov (United States)

    Zhang, Yang; Liu, Wei; Li, Xiaodong; Yang, Fan; Gao, Peng; Jia, Zhenyuan

    2015-10-01

    Large-scale triangulation scanning measurement systems are widely used to measure the three-dimensional profile of large-scale components and parts. The accuracy and speed of the laser stripe center extraction are essential for guaranteeing the accuracy and efficiency of the measuring system. However, in the process of large-scale measurement, multiple factors can cause deviation of the laser stripe center, including the spatial light intensity distribution, material reflectivity characteristics, and spatial transmission characteristics. A center extraction method is proposed for improving the accuracy of the laser stripe center extraction based on image evaluation of Gaussian fitting structural similarity and analysis of the multiple source factors. First, according to the features of the gray distribution of the laser stripe, evaluation of the Gaussian fitting structural similarity is estimated to provide a threshold value for center compensation. Then using the relationships between the gray distribution of the laser stripe and the multiple source factors, a compensation method of center extraction is presented. Finally, measurement experiments for a large-scale aviation composite component are carried out. The experimental results for this specific implementation verify the feasibility of the proposed center extraction method and the improved accuracy for large-scale triangulation scanning measurements.

  10. Rust of Garlic, Leek and Onion

    OpenAIRE

    Karov, Ilija; Mitrev, Sasa; Spasov, Dusan; Spasova, Dragica; Georgievski, Milan

    2002-01-01

    The research was conducted in the second half of 2001, in 2002, and in the first quarter of 2003. A large number of binocular and microscopic examinations were conducted on the gathered contaminated plant material, from which was concluded thе Puccinia porri (Sow.) Winter most often appears on leek and garlic, and that Puccinia allii, (D.C.) Rudolph can be seen on onion, leek and garlic. In the Republic of Macedonia, the rust most often appears on leek and garlic, and not too often on oni...

  11. Benzocaine as an anesthetic for striped bass

    Science.gov (United States)

    Gilderhus, Philip A.; Lemm, Carol A.; Woods, L. Curry, III

    1991-01-01

    Benzocaine was tested as an anesthetic on juvenile and mature adult striped bass (Morone saxatilis ). Concentrations of 55 mg/L at 22 degree C to 80 mg/L at 11 degree C effectively anesthetized fish in about 3 min. Recovery was more rapid as temperature increased. Fish survived concentrations of twice the effective concentration and exposure times up to 60 min at the effective concentration. Striped bass required higher concentrations for anesthetization than had been previously demonstrated for salmonid fishes, but safety margins for both concentration and exposure time were wider than for the salmonids.

  12. Host jumps shaped the diversity of extant rust fungi (Pucciniales).

    Science.gov (United States)

    McTaggart, Alistair R; Shivas, Roger G; van der Nest, Magriet A; Roux, Jolanda; Wingfield, Brenda D; Wingfield, Michael J

    2016-02-01

    The aim of this study was to determine the evolutionary time line for rust fungi and date key speciation events using a molecular clock. Evidence is provided that supports a contemporary view for a recent origin of rust fungi, with a common ancestor on a flowering plant. Divergence times for > 20 genera of rust fungi were studied with Bayesian evolutionary analyses. A relaxed molecular clock was applied to ribosomal and mitochondrial genes, calibrated against estimated divergence times for the hosts of rust fungi, such as Acacia (Fabaceae), angiosperms and the cupressophytes. Results showed that rust fungi shared a most recent common ancestor with a mean age between 113 and 115 million yr. This dates rust fungi to the Cretaceous period, which is much younger than previous estimations. Host jumps, whether taxonomically large or between host genera in the same family, most probably shaped the diversity of rust genera. Likewise, species diversified by host shifts (through coevolution) or via subsequent host jumps. This is in contrast to strict coevolution with their hosts. Puccinia psidii was recovered in Sphaerophragmiaceae, a family distinct from Raveneliaceae, which were regarded as confamilial in previous studies. PMID:26459939

  13. Genetic analysis of leaf rust resistance in six durum wheat genotypes.

    Science.gov (United States)

    Loladze, Alexander; Kthiri, Dhouha; Pozniak, Curtis; Ammar, Karim

    2014-12-01

    Leaf rust, caused by Puccinia triticina, is one of the main fungal diseases limiting durum wheat production. This study aimed to characterize previously undescribed genes for leaf rust resistance in durum wheat. Six different resistant durum genotypes were crossed to two susceptible International Maize and Wheat Improvement Center (CIMMYT) lines and the resulting F1, F2, and F3 progenies were evaluated for leaf rust reactions in the field and under greenhouse conditions. In addition, allelism tests were conducted. The results of the study indicated that most genotypes carried single effective dominant or recessive seedling resistance genes; the only exception to this was genotype Gaza, which carried one adult plant and one seedling resistance gene. In addition, it was concluded that the resistance genes identified in the current study were neither allelic to LrCamayo or Lr61, nor were they related to Lr3 or Lr14a, the genes that already are either ineffective or are considered to be vulnerable for breeding purposes. A complicated allelic or linkage relationship between the identified genes is discussed. The results of the study will be useful for breeding for durable resistance by creating polygenic complexes. PMID:24906010

  14. A simulation model for epidemics of stem rust in ryegrass seed crops.

    Science.gov (United States)

    Pfender, W F; Upper, D

    2015-01-01

    A simulation model (STEMRUST_G, named for stem rust of grasses) was created for stem rust (caused by Puccinia graminis subsp. graminicola) in perennial ryegrass grown to maturity as a seed crop. The model has a daily time step and is driven by weather data and an initial input of disease severity from field observation. Key aspects of plant growth are modeled. Disease severity is modeled as rust population growth, where individuals are pathogen colonies (pustules) grouped in cohorts defined by date of initiation and plant part infected. Infections due to either aerial spread or within-plant contact spread are modeled. Pathogen cohorts progress through life stages that are modeled as disease cycle components (colony establishment, latent period, infectious period, and sporulation) affected by daily weather variables, plant growth, and fungicide application. Fungicide effects on disease cycle components are modeled for two commonly used active ingredients, applied preinfection or postinfection. Previously validated submodels for certain disease cycle components formed the framework for integrating additional processes, and the complete model was calibrated with field data from 10 stem rust epidemics. Discrepancies between modeled outcomes and the calibration data (log10[modeled]-log10[observed]) had a mean near zero but considerable variance, with 1 standard deviation=0.5 log10 units (3.2-fold). It appears that a large proportion of the modeling error variance may be due to variability in field observations of disease severity. An action threshold for fungicide application was derived empirically, using a constructed weather input file favorable for disease development. The action threshold is a negative threshold, representing a level of disease (latent plus visible) below which damaging levels of disease are unable to develop before the yield-critical crop stage. The model is in the public domain and available on the Internet. PMID:25098493

  15. Current status, likely migration and strategies to mitigate the threat to wheat production from race UG99 (TTKS) of stem rust pathogen

    Science.gov (United States)

    Stem or black rust, caused by Puccinia graminis tritici, has historically caused severe losses to wheat (Triticum aestivum) production worldwide. Successful control of the disease for over three decades through the use of genetic resistance has resulted in a sharp decline in research activity in rec...

  16. Creation of variation in Basella for rust resistance through mutagenesis

    International Nuclear Information System (INIS)

    African spinach, basella is grown as a leafy vegetable in Central Africa. Basella cultivars belong to the species Basella alba and B. rubra which are seed propagated and are likely Asiatic in origin. Basella alba seeds were irradiated with doses of 50, 100, 200, 300 and 500 Gy to create variation for rust resistance which is caused by the fungus, Uromyces basellae Sidow. The effects of irradiation were investigated on seed germination, plant mortality and height. Seed germination varied from 97% for those irradiated with 50 Gy to 39% with 500 Gy, and LD50 for seed germination was between 300 to 400 Gy. Doses between 50 and 150 Gy did not cause any mortality of plants obtained from irradiated seeds; however, doses between 200 to 500 Gy caused high mortality among such plants. Irradiation with 150 Gy inhibited plant growth by 48% in relation to the growth of control plants. Based on the results, radiation doses above 150 and up to 400 Gy were used for the production of desired variation. (author). 11 refs, 9 figs

  17. Genome-wide association study for crown rust (Puccinia coronata f. sp. avenae) and powdery mildew (Blumeria graminis f. sp. avenae) resistance in an oat (Avena sativa) collection of commercial varieties and landraces

    OpenAIRE

    Montilla-Bascón, Gracia; Rispail, Nicolas; Sánchez-Martín, Javier; Rubiales, Diego; Mur, Luis A. J.; Langdon, Tim; Howarth, Catherine J.; Prats, Elena

    2015-01-01

    Diseases caused by crown rust (Puccinia coronata f. sp. avenae) and powdery mildew (Blumeria graminis f. sp. avenae) are among the most important constraints for the oat crop. Breeding for resistance is one of the most effective, economical, and environmentally friendly means to control these diseases. The purpose of this work was to identify elite alleles for rust and powdery mildew resistance in oat by association mapping to aid selection of resistant plants. To this aim, 177 oat accessions...

  18. Incorporation of Monovalent Cations in Sulfate Green Rust

    DEFF Research Database (Denmark)

    Christiansen, B. C.; Dideriksen, K.; Katz, A.;

    2014-01-01

    Green rust is a naturally occurring layered mixed-valent ferrous-ferric hydroxide, which can react with a range of redox-active compounds. Sulfate-bearing green rust is generally thought to have interlayers composed of sulfate and water. Here, we provide evidence that the interlayers also contain...... water showed that Na+ and K+ were structurally fixed in the interlayer, whereas Rb+ and Cs+ could be removed, resulting in a decrease in the basal layer spacing. The incorporation of cations in the interlayer opens up new possibilities for the use of sulfate green rust for exchange reactions with both...

  19. Genetic mapping of stem rust resistance gene Sr13 in tetraploid wheat (Triticum turgidum ssp. durum L.)

    OpenAIRE

    Simons, K; Abate, Z.; Chao, S; Zhang, W.; Rouse, M; Jin, Y.; Elias, E; Dubcovsky, J

    2011-01-01

    Wheat stem rust caused by Puccinia graminis f. sp. tritici, can cause significant yield losses. To combat the disease, breeders have deployed resistance genes both individually and in combinations to increase resistance durability. A new race, TTKSK (Ug99), identified in Uganda in 1999 is virulent on most of the resistance genes currently deployed, and is rapidly spreading to other regions of the world. It is therefore important to identify, map, and deploy resistance genes that are still eff...

  20. Slow rusting response of different wheat genotypes against the leaf rust in relation to epidemiological factors in Faisalabad

    International Nuclear Information System (INIS)

    Wheat genotypes were screened against leaf rust to evaluate slow rusting response. Among one hundred and sixty varieties/lines, 86 showed response to leaf rust while all other remained immune or showed no response. The slow rusting, wheat varieties/ lines displayed 20-40% severity level and these were Maxi-Pak65, Blue silver, Pothohar, Punjab81, Faisalabd-83, Shalimar-88, Kohnoor-83, Pasban-90, Inqilab-91, Uqab-99-94105, Punjab-76, Parwaz-94, HD2169, HD2179, HD2204, HD2285, Lr27+31, LrB, LR17, Lr14A, Lr15 and Yr1-E-1 while the fast rusting varieties/lines that showed severity level up to 90% were WL-711, Morocco, PAK-1, Punjab-85 and Chakwal-86 SA42, SA75, Lr1, Lr2A, Lr2B. Lr23, Lr3KA, Lr3g, Lr10, Lr18, Lr21, Lr24, Yr2-E35 and 95153 respectively. Slow rusting genotypes exhibited low AUDPC (200-400) values while fast rusters displayed high AUDPC (400-1500) values. Leaf rust severity displayed significant correlation with maximum and minimum temperatures, rainfall and sunshine radiation. It was observed that with an increase of these environmental conditions a significant increase in disease severity was recorded

  1. Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factors

    Directory of Open Access Journals (Sweden)

    Antoine ePersoons

    2014-09-01

    Full Text Available Melampsora larici-populina is a fungal pathogen responsible for foliar rust disease on poplar trees, which causes damage to forest plantations worldwide, particularly in Northern Europe. The reference genome of the isolate 98AG31 was previously sequenced using a whole genome shotgun strategy, revealing a large genome of 101 megabases containing 16,399 predicted genes, which included secreted protein genes representing poplar rust candidate effectors. In the present study, the genomes of 15 isolates collected over the past 20 years throughout the French territory, representing distinct virulence profiles, were characterized by massively parallel sequencing to assess genetic variation in the poplar rust fungus. Comparison to the reference genome revealed striking structural variations. Analysis of coverage and sequencing depth identified large missing regions between isolates related to the mating type loci. More than 611,824 single-nucleotide polymorphism (SNP positions were uncovered overall, indicating a remarkable level of polymorphism. Based on the accumulation of non-synonymous substitutions in coding sequences and the relative frequencies of synonymous and non-synonymous polymorphisms (i.e. PN/PS, we identify candidate genes that may be involved in fungal pathogenesis. Correlation between non-synonymous SNPs in genes encoding secreted proteins and pathotypes of the studied isolates revealed candidate genes potentially related to virulences 1, 6 and 8 of the poplar rust fungus.

  2. Comparative Ecology of Juvenile Striped Bass and Juvenile Hybrid Striped Bass in Claytor Lake, Virginia

    OpenAIRE

    Rash, Jacob Michael

    2003-01-01

    Since the introduction of hybrid striped bass M. chrysops x M. saxatilis to Claytor Lake, Virginia in 1993, relative abundance of striped bass Morone saxatilis has dropped disproportionately to stocking density. Potentially deleterious interactions between the two fishes that may limit recruitment to age 1 were considered in terms of trophic relationships, physiological indices of health, overwinter survival, and post-stocking predation. Both fishes preferred habitat types characterized ...

  3. Audiogram of a striped dolphin (Stenella coeruleoalba)

    NARCIS (Netherlands)

    Kastelein, R.A.; Hagedoorn, M.; Au, W.W.L.; Haan, de D.

    2003-01-01

    The underwater hearing sensitivity of a striped dolphin was measured in a pool using standard psycho-acoustic techniques. The go/no-go response paradigm and up¿down staircase psychometric method were used. Auditory sensitivity was measured by using 12 narrow-band frequency-modulated signals having c

  4. Identification of Wheat Gene Sr35 that Confers Resistance to Ug99 Stem Rust Race Group

    OpenAIRE

    Saintenac, Cyrille; Zhang, Wenjun; Salcedo, Andres; Rouse, Matthew N.; Trick, Harold N.; Akhunov, Eduard; Dubcovsky, Jorge

    2013-01-01

    Wheat stem rust, caused by Puccinia graminis f. sp. tritici (Pgt), is a devastating disease that can cause severe yield losses. A new Pgt race designated Ug99 has overcome most of the widely used resistance genes and is threatening major wheat production areas. Here we demonstrate that the Sr35 gene from Triticum monococcum is a coiled coil-nucleotide binding-leucine rich repeat gene that confers near-immunity to Ug99 and related races. This gene is absent in the A-genome diploid donor and in...

  5. Identification of wheat gene Sr35 that confers resistance to Ug99 stem rust race group

    OpenAIRE

    Saintenac, C; Zhang, W.; Salcedo, A.; Rouse, MN; Trick, HN; Akhunov, E.; Dubcovsky, J

    2013-01-01

    Wheat stem rust, caused by Puccinia graminis f. sp. tritici (Pgt), is a devastating disease that can cause severe yield losses. A previously uncharacterized Pgt race, designated Ug99, has overcome most of the widely used resistance genes and is threatening major wheat production areas. Here, we demonstrate that the Sr35 gene from Triticum monococcum is a coiled-coil, nucleotide-binding, leucine-rich repeat gene that confers near immunity to Ug99 and related races. This gene is absent in the A...

  6. The fundamental thermal niche of adult landlocked striped bass

    Science.gov (United States)

    Bettoli, P.W.

    2005-01-01

    Researchers have described the temperatures selected by landlocked striped bass Morone saxatilis in different locales throughout the USA. However, seasonally low concentrations of dissolved oxygen (DO) in many systems prevented striped bass from using the cool waters (niche of adult landlocked striped bass may be lower than literature estimates. These results also represent the first unbiased field estimates of the influence of season on the thermal ecology of adult striped bass. The thermal characteristics of habitats considered optimal in habitat suitability index models for adult landlocked striped bass (i.e., 18-24??C) should be revised to include cooler waters. ?? Copyright by the American Fisheries Society 2005.

  7. Possibility of cereals protection against rusts by resistant breeding method

    OpenAIRE

    Czesław Zamorski; Bogdan Nowicki; Małgorzata Schollenberger; Wojciech Wakulski

    2013-01-01

    In the years 1999-2001 field trials were run on susceptibility of wheat and triticale genotypes to infection by three rust fungi (Puccinia recondita, Puccinia graminis, Puccinia striiformis). The results of the observation of the infection level in following years have been similar. Among genotypes of winter wheat, breeding lines susceptible to Puccinia striiformis infection were rare, but among spring wheat 50% of genotypes were susceptible to yellow rust infection. A much higher level of se...

  8. Rust disease continues to threaten California garlic crop

    OpenAIRE

    Koike, Steven T.; Smith, Richard; Davis, R. Michael; Nunez, J. Joe; Voss, Ron E.

    2001-01-01

    In 1998, following the very wet EI Niño weather event, a devastating outbreak of rust disease severely damaged the garlic crop in California. The disease also occurred in 1999 and 2000, indicating that rust may have developed into an annual problem. We identified the pathogen as Puccinia allii. In our study, it infected allium crops such as garlic, onion and chives, but not leek, elephant garlic or shallot. Currently registered materials did not control the disease, but tebuconazole (Folicur)...

  9. Concerted action of two avirulent spore effectors activates Reaction to Puccinia graminis 1 (Rpg1)-mediated cereal stem rust resistance.

    Science.gov (United States)

    Nirmala, Jayaveeramuthu; Drader, Tom; Lawrence, Paulraj K; Yin, Chuntao; Hulbert, Scot; Steber, Camille M; Steffenson, Brian J; Szabo, Les J; von Wettstein, Diter; Kleinhofs, Andris

    2011-08-30

    The barley stem rust resistance gene Reaction to Puccinia graminis 1 (Rpg1), encoding a receptor-like kinase, confers durable resistance to the stem rust pathogen Puccinia graminis f. sp. tritici. The fungal urediniospores form adhesion structures with the leaf epidermal cells within 1 h of inoculation, followed by hyphae and haustorium formation. The RPG1 protein is constitutively expressed and not phosphorylated. On inoculation with avirulent urediniospores, it is phosphorylated in vivo within 5 min and subsequently degraded. Application of arginine-glycine-aspartic acid peptide loops prevented the formation of adhesion structures for spore attachment, the phosphorylation of RPG1, and germination of the viable spores. Arginine-glycine-aspartic acid affinity chromatography of proteins from the ungerminated avirulent rust spores led to the purification and identification of a protein with fibronectin type III and breast cancer type 1 susceptibility protein domains and a vacuolar protein sorting-associated protein 9 with a coupling of ubiquitin to endoplasmic reticulum degradation domain. Both proteins are required to induce in vivo phosphorylation and degradation of RPG1. Combined application of both proteins caused hypersensitive reaction on the stem rust-resistant cultivar Morex but not on the susceptible cultivar Steptoe. Expression studies indicated that mRNA of both genes are present in ungerminated urediniospores and are constitutively transcribed in sporelings, infected leaves, and haustoria in the investigated avirulent races. Evidence is presented that RPG1, in yeast, interacts with the two protein effectors from the urediniospores that activate cooperatively the stem rust resistance protein RPG1 long before haustoria formation. PMID:21873196

  10. Geysers from the Tiger Stripes of Enceladus

    Science.gov (United States)

    Kohler, Susanna

    2015-10-01

    Enceladus, the sixth-largest moon of Saturn, is a cold, icy world but its also remarkably active. Recent studies have charted over a hundred geysers venting gas and dust into space from Enceladus south polar region. New research addresses the question of how the moons extreme surface terrain influences the locations and behavior of these geysers.Active PlumesEnceladus orbiting within Saturns E ring. Enceladus plumes probably created this ring. [NASA/JPL/Space Science Institute]A decade ago, scientists discovered that Enceladus south polar region is home to a prominent set of four fractures known as the tiger stripes. This region was found to contain roughly 100 geyser jets, which form plumes of gas and dust venting into space at a combined rate of ~200 kilograms per second! These plumes are probably the source of the material in Saturns E ring, in which Enceladus orbits.Recently, Carolyn Porco (UC Berkeley and CICLOPS Space Science Institute) led a study that analyzed 6.5 years of Cassini data, surveying the locations and orientations of 101 geysers. The outcome was peculiar: the geysers are distributed along the tiger stripes, but their directions are not all pointing vertically from the surface (see the video below!).Now, Paul Helfenstein (Cornell University) has teamed up with Porco to examine whether the surface terrain surrounding the geysers affects where the jets erupt, what direction they point, and even when theyre active.Surface InfluenceHelfenstein and Porco demonstrate that the locations and behavior of the geysers are very likely influenced by Enceladus surface features in this region. In particular, they find:The spacing of the geyser jets on Enceladus is not random.The jets are roughly uniformly distributed along the three most active tiger stripes, spaced about 5 kilometers apart. This fixed spacing might be due to shear fractures produced by fault motion along the tiger stripes cutting across the stripes at regular intervals and providing

  11. Relation Between Open Circuit Potential and Polarization Resistance with Rust and Corrosion Monitoring of Mild Steel

    Science.gov (United States)

    Choudhary, S.; Garg, A.; Mondal, K.

    2016-07-01

    The present work discusses continuous corrosion assessment from a unique correlation of open circuit potential (OCP) and linear polarization resistance with rust formation on mild steel after prolong exposure in 3.5% NaCl salt fog environment. The OCP measurement and linear polarization tests were carried out of the rusted samples only without the removal of rust. It also discusses the strong influence of the composition, fraction, and morphology of the rust layers with OCP and linear polarization resistance. The rust characterization was done after the measurement of OCP and linear polarization resistance of the rusted steel samples. Therefore, monitoring of both the OCP and linear polarization resistance of the rusted mild steels coupled with rust characterization could be used for easy and dynamic assessment of the nature of corrosion.

  12. Dislocation dynamics in an anisotropic stripe pattern.

    Science.gov (United States)

    Kamaga, Carina; Ibrahim, Fatima; Dennin, Michael

    2004-06-01

    The dynamics of dislocations confined to grain boundaries in a striped system are studied using electroconvection in the nematic liquid crystal N4. In electroconvection, a striped pattern of convection rolls forms for sufficiently high driving voltages. We consider the case of a rapid change in the voltage that takes the system from a uniform state to a state consisting of striped domains with two different wave vectors. The domains are separated by domain walls along one axis and a grain boundary of dislocations in the perpendicular direction. The pattern evolves through dislocation motion parallel to the domain walls. We report on features of the dislocation dynamics. The kinetics of the domain motion is quantified using three measures: dislocation density, average domain wall length, and total domain wall length per area. All three quantities exhibit behavior consistent with power-law evolution in time, with the defect density decaying as t(-1/3), the average domain wall length growing as t(1/3), and the total domain wall length decaying as t(-1/5). The two different exponents are indicative of the anisotropic growth of domains in the system. PMID:15244714

  13. TRIPATH: A Biological Genetic and Genomic Database of Three Economically Important Fungal Pathogen of Wheat – Rust: Smut: Bunt

    OpenAIRE

    Garg, Swati; Pandey, Dinesh; Taj, Gohar; Goel, Anshita; Kumar, Anil

    2014-01-01

    Wheat, the major source of vegetable protein in human diet, provides staple food globally for a large proportion of the human population. With higher protein content than other major cereals, wheat has great socio- economic importance. Nonetheless for wheat, three important fungal pathogens i.e. rust, smut and bunt are major cause of significant yield losses throughout the world. Researchers are putting up a strong fight against devastating wheat pathogens, and have made progress in tracking ...

  14. Urediospores of Puccinia spp. and other rusts are warm-temperature ice nucleators and harbor ice nucleation active bacteria

    OpenAIRE

    A. R. Moukahel; Gonçalves, F.L.T.; Asaad, S.; Samsatly, J.; Glaux, C.; Sands, D C; C. E. Morris; Bigg, E. K.

    2012-01-01

    In light of various features of the biology of the rust fungi and of the epidemiology of the plant diseases they cause that illustrate the important role of rainfall in their life history, we have characterized the ice nucleation activity (INA) of the aerially disseminated spores (urediospores) of this group of fungi. Urediospores of this obligate plant parasite were collected from natural infections from 7 species of weeds in France, from coffee in Brazil and from field and greenhouse...

  15. Urediospores of rust fungi are ice nucleation active at > −10 °C and harbor ice nucleation active bacteria

    OpenAIRE

    C. E. Morris; Sands, D C; Glaux, C.; Samsatly, J.; Asaad, S.; A. R. Moukahel; Gonçalves, F.L.T.; Bigg, E. K.

    2013-01-01

    Various features of the biology of the rust fungi and of the epidemiology of the plant diseases they cause illustrate the important role of rainfall in their life history. Based on this insight we have characterized the ice nucleation activity (INA) of the aerially disseminated spores (urediospores) of this group of fungi. Urediospores of this obligate plant parasite were collected from natural infections of 7 species of weeds in France, from coffee in Brazil and from field and greenhouse-gro...

  16. Determining the order of genes for resistance against Stagonospora nodorum blotch, Fusarium head blight and stem rust on wheat chromosome 3BS

    Science.gov (United States)

    Fungal diseases of wheat occur every year in the U.S., leading to significant grain yield losses. Stagonospora nodorum blotch (SNB), Fusarium head blight (FHB) and stem rust (SR) are caused by the fungi Stagonospora nodorum, Fusarium graminearum and Puccinia graminis, respectively. These leaf and he...

  17. Capillary flow driven gradient generation in fluid stripes for biomaterial and biomedical applications

    Science.gov (United States)

    Hancock, Matthew; He, Jiankang; Piraino, Francesco; Camci-Unal, Gulden; Khademhosseini, Ali

    2011-11-01

    A simple and inexpensive bench-top method is presented employing passive mechanisms to generate centimeters-long gradients of molecules and particles in under a second with only a coated glass slide and a micropipette. By patterning hydrophilic regions on a substrate, a stripe of prepolymer solution is held in place on a glass slide by a hydrophobic boundary. Adding a droplet to one end of this ``pre-wet'' stripe causes a rapid capillary flow that spreads the droplet along the stripe to generate a gradient in the relative concentrations of the droplet and pre-wet solutions. Experiments and theoretical models characterize the flows and gradient profiles and their dependence on the fluid volumes, properties, and stripe geometry. A bench-top rapid prototyping method allows the user to design and fabricate the coated slides using only tape and hydrophobic spray. Gradient biomaterials are produced by crosslinking gradients of prepolymer solutions. Applications include producing a soluble drug gradient over cells in shear-protected microwells, generating a concentration gradient of cells encapsulated in three dimensions within a homogeneous biopolymer, and synthesizing a biomaterial with encapsulated cells exhibiting a gradient in cell spreading.

  18. 3D Measurement Technology by Structured Light Using Stripe-Edge-Based Gray Code

    International Nuclear Information System (INIS)

    The key problem of 3D vision measurement using triangle method based on structured light is to acquiring projecting angle of projecting light accurately. In order to acquire projecting angle thereby determine the corresponding relationship between sampling point and image point, method for encoding and decoding structured light based on stripe edge of Gray code is presented. The method encoded with Gray code stripe and decoded with stripe edge acquired by sub-pixel technology instead of pixel centre, so latter one-bit decoding error was removed. Accuracy of image sampling point location and correspondence between image sampling point and object sampling point achieved sub-pixel degree. In addition, measurement error caused by dividing projecting angle irregularly by even-width encoding stripe was analysed and corrected. Encoding and decoding principle and decoding equations were described. Finally, 3dsmax and Matlab software were used to simulate measurement system and reconstruct measured surface. Indicated by experimental results, measurement error is about 0.05%

  19. Effects of different heat treatments on lipid quality of striped catfish (Pangasius hypophthalmus

    Directory of Open Access Journals (Sweden)

    Zdzisław Domiszewski

    2011-09-01

    Full Text Available   Background. As a result of consumer acceptance and low price production, sales of striped catfish fillets continue to grow. Striped catfish fillets, due to their white meat and lack of fish scent, can be an alternative to fish such as cod or hake. The paper analysed the influence of four different kinds of heat treatment: boiling with and without the addition of salt, frying, microwave cooking, microwave cooking without water on the composition of fatty acids and the lipid oxidation and hydrolysis level of striped catfish fillets. Material and methods. Assays were performed on striped catfish fillets (Pangasius hypophthalmus, Sauvage 1878, which were bought from local supermarket. Fillets one year before expiration date were assayed. Quality of fish lipids was determined by an analysis of the following factors: peroxide value (PV, anisidine value (AsV, TOTOX value, conjugated dienes (CD, acid value (AV, along with an analysis of the composition of fatty acid (FA via gas chromatography. Results. It was shown that conventional cooking and microwave cooking of striped catfish fillets results in an approximately 10% change in the amount of PUFA, including EPA and DHA, whereas the percentages of SFA and MUFA remain unchanged. The amount of the sum of EPA and DHA in 100 g of raw fillet was 16.5 mg, whereas after conventional cooking, microwave cooking and frying the sum of EPA and DHA was respectively: 12, 22 and 23 mg. It was observed that conventional cooking causes an average 10% loss of fat, a change not observed in case of microwave cooking. In spite of a substantial influence of heat treatment on the amount of both primary and secondary oxidation products, striped catfish lipids maintained good quality after the treatment – PV of every sample was below 3 meq O2/kg lipids, and AsV below 1.5. The addition of salt during boiling caused a 16-fold increase in the amount of peroxides and a fourfold increase in the amount of secondary oxidation

  20. Quantum magnetism in the stripe phase: bond- versus site order

    OpenAIRE

    Tworzydlo, J.; Osman, O.Y.; van Duin, C. N. A.; Zaanen, J.

    1998-01-01

    It is argued that the spin dynamics in the charge-ordered stripe phase might be revealing with regards to the nature of the anomalous spin dynamics in cuprate superconductors. Specifically, if the stripes are bond ordered much of the spin fluctuation will originate in the spin sector itself, while site ordered stripes require the charge sector as the driving force for the strong quantum spin fluctuations.

  1. Wheat Rust Information Resources - Integrated tools and data for improved decision making

    DEFF Research Database (Denmark)

    Hodson, David; Hansen, Jens Grønbech; Lassen, Poul;

    . Integration of the CIMMYT Wheat Atlas and the Genetic Resources Information System (GRIS) databases provides a rich resource on wheat cultivars and their resistance to important rust races. Data access is facilitated via dedicated web portals such as Rust Tracker (www.rusttracker.org) and the Global Rust...

  2. Coherent quantum cascade laser micro-stripe arrays

    Directory of Open Access Journals (Sweden)

    G. M. de Naurois

    2011-09-01

    Full Text Available We have fabricated InP-based coherent quantum cascade laser micro-stripe arrays. Phase-locking is provided by evanescent coupling between adjacent stripes. Stripes are buried into semi-insulating iron doped InP. Lasing at room temperature is obtained at 8.4μm for stripe arrays comprising up to 16 emitters. Pure supermode emission is demonstrated via farfield measurements and simulations. The farfield pattern shows a dual-lobe emission, corroborating the predicted phase-locked antisymmetric supermode emission.

  3. Coherent quantum cascade laser micro-stripe arrays

    OpenAIRE

    G. M. de Naurois; Carras, M.; B. Simozrag; O. Patard; Alexandre, F.; X. Marcadet

    2011-01-01

    We have fabricated InP-based coherent quantum cascade laser micro-stripe arrays. Phase-locking is provided by evanescent coupling between adjacent stripes. Stripes are buried into semi-insulating iron doped InP. Lasing at room temperature is obtained at 8.4μm for stripe arrays comprising up to 16 emitters. Pure supermode emission is demonstrated via farfield measurements and simulations. The farfield pattern shows a dual-lobe emission, corroborating the predicted phase-locked antisymmetric su...

  4. Painting rusted steel: The role of aluminum phosphosilicate

    International Nuclear Information System (INIS)

    Highlights: •Aluminum phosphosilicate is an acid pigment which could act as mild phosphating agent. •Aluminum phosphosilicate can phosphatize iron oxides on rusted surfaces. •Aluminum phosphosilicate is compatible with acid binders. •Aluminum phosphosilicate could replace chromate in complete painting schemes. •Aluminum phosphosilicate primers improve paints adhesion on rusted surfaces. -- Abstract: Surface preparation is a key factor for the adequate performance of a paint system. The aim of this investigation is to employ a wash-primer to accomplish the chemical conversion of rusted surface when current cleaning operations are difficult to carry out. The active component of the wash-primer was aluminum phosphosilicate whose electrochemical behavior and the composition of the generated protective layer, both, were studied by electrochemical techniques and scanning electron microscopy (SEM), respectively. Primed rusted steel panels were coated with an alkyd system to perform accelerated tests in the salt spray chamber and electrochemical impedance measurements (EIS). These tests were conducted in parallel with a chromate wash primer and the same alkyd system. Results showed that the wash-primer containing aluminum phosphosilicate could be used satisfactorily to paint rusted steel exhibiting a similar performance to the chromate primer

  5. Identification of New Resistance Loci to African Stem Rust Race TTKSK in Tetraploid Wheats Based on Linkage and Genome-Wide Association Mapping.

    Science.gov (United States)

    Laidò, Giovanni; Panio, Giosuè; Marone, Daniela; Russo, Maria A; Ficco, Donatella B M; Giovanniello, Valentina; Cattivelli, Luigi; Steffenson, Brian; de Vita, Pasquale; Mastrangelo, Anna M

    2015-01-01

    Stem rust, caused by Puccinia graminis Pers. f. sp. tritici Eriks. and E. Henn. (Pgt), is one of the most destructive diseases of wheat. Races of the pathogen in the "Ug99 lineage" are of international concern due to their virulence for widely used stem rust resistance genes and their spread throughout Africa. Disease resistant cultivars provide one of the best means for controlling stem rust. To identify quantitative trait loci (QTL) conferring resistance to African stem rust race TTKSK at the seedling stage, we evaluated an association mapping (AM) panel consisting of 230 tetraploid wheat accessions under greenhouse conditions. A high level of phenotypic variation was observed in response to race TTKSK in the AM panel, allowing for genome-wide association mapping of resistance QTL in wild, landrace, and cultivated tetraploid wheats. Thirty-five resistance QTL were identified on all chromosomes, and seventeen are of particular interest as identified by multiple associations. Many of the identified resistance loci were coincident with previously identified rust resistance genes; however, nine on chromosomes 1AL, 2AL, 4AL, 5BL, and 7BS may be novel. To validate AM results, a biparental population of 146 recombinant inbred lines was also considered, which derived from a cross between the resistant cultivar "Cirillo" and susceptible "Neodur." The stem rust resistance of Cirillo was conferred by a single gene on the distal region of chromosome arm 6AL in an interval map coincident with the resistance gene Sr13, and confirmed one of the resistance loci identified by AM. A search for candidate resistance genes was carried out in the regions where QTL were identified, and many of them corresponded to NBS-LRR genes and protein kinases with LRR domains. The results obtained in the present study are of great interest as a high level of genetic variability for resistance to race TTKSK was described in a germplasm panel comprising most of the tetraploid wheat sub-species. PMID

  6. Molecular cloning and characterization of two hypersensitive induced reaction genes from wheat infected by stripe rust pathogen

    Science.gov (United States)

    A novel gene induced during hypersensitive reaction (HIR) in wheat was identified using in silico cloning and designated as TaHIR2. The TaHIR2 gene was deduced to encode a 284-amino acid protein, whose molecular mass and isoelectric point (pI) were 31.05 kD and 5.18, respectively. Amino acid sequenc...

  7. The gene Sr33, an ortholog of barley Mla genes, encodes resistance to wheat stem rust race Ug99.

    Science.gov (United States)

    Periyannan, Sambasivam; Moore, John; Ayliffe, Michael; Bansal, Urmil; Wang, Xiaojing; Huang, Li; Deal, Karin; Luo, Mingcheng; Kong, Xiuying; Bariana, Harbans; Mago, Rohit; McIntosh, Robert; Dodds, Peter; Dvorak, Jan; Lagudah, Evans

    2013-08-16

    Wheat stem rust, caused by the fungus Puccinia graminis f. sp. tritici, afflicts bread wheat (Triticum aestivum). New virulent races collectively referred to as "Ug99" have emerged, which threaten global wheat production. The wheat gene Sr33, introgressed from the wild relative Aegilops tauschii into bread wheat, confers resistance to diverse stem rust races, including the Ug99 race group. We cloned Sr33, which encodes a coiled-coil, nucleotide-binding, leucine-rich repeat protein. Sr33 is orthologous to the barley (Hordeum vulgare) Mla mildew resistance genes that confer resistance to Blumeria graminis f. sp. hordei. The wheat Sr33 gene functions independently of RAR1, SGT1, and HSP90 chaperones. Haplotype analysis from diverse collections of Ae. tauschii placed the origin of Sr33 resistance near the southern coast of the Caspian Sea. PMID:23811228

  8. Studies on stem and leaf rust resistance in wheat

    International Nuclear Information System (INIS)

    Stem and leaf rust resistance was successfully transferred from Agropyron to wheat by radiation-induced translocations. Mutation induction subsequently proved to be useful in separating an undesired gene for yellow pigment from the resistance. The homoeologous pairing mutant obtained by Sears was also used successfully in obtaining transfers through crossing-over between wheat and Agropyron chromosomes. Another experimental series succeeded in accumulating minor genes for rust resistance, after eliminating major genes for specific resistance. The resistance is polygenic and widely effective although not general. It is recessively inherited, and hoped to be more durable than major gene resistance used so far in the Canadian prairies. An attempt to induce mutations for leaf rust resistance in a small-scale experiment with leading Canadian wheat varieties Manitou and Neepawa using gamma rays and EMS has not been successful. (author)

  9. Anisotropic flow in striped superhydrophobic channels

    CERN Document Server

    Zhou, Jiajia; Schmid, Friederike; Vinogradova, Olga I

    2012-01-01

    We report results of dissipative particle dynamics simulations and develop a semi-analytical theory and of an anisotropic flow in a parallel-plate channel with two superhydrophobic striped walls. Our approach is valid for any local slip at the gas sectors and an arbitrary distance between the plates, ranging from a thick to a thin channel. It allows us to optimize area fractions, slip lengths, channel thickness and texture orientation to maximize a transverse flow. Our results may be useful for extracting effective slip tensors from global measurements, such as the permeability of a channel, in experiments or simulations, and may also find applications in passive microfluidic mixing.

  10. Control Of Rust Disease In Irradiated Vicia Faba By Using Safe Alternative Methods

    International Nuclear Information System (INIS)

    Infection of Vicia faba with Uromyces viciae-fabae causes significant decrease in growth and total nitrogen content and increase in the phenolic compounds. The study was carried out to investigate the effects of chemicals used as drench application in soil (e.g. saccharin), biotic agents (e.g. Bacillus subtilis) and artificial essential oils (e.g. rosemary) in irradiated (0, 5, 10, 15 Gy) broad bean Vicia faba on the rust fungus Uromyces viciae-fabae. Bacillus subtilis was inoculated to beans at the third leaf then saccharin (5 mM/l) was used as drench application in the soil and the essential oil was used for foliar application at concentrations 0, 500, 1000 and 1500 ppm. All treatments gave positive results to control the disease but differ in the mechanism of action. The control of the disease with saccharin application may be due to the formation of antimicrobial components (wyrone acid) by plant tissues and increase with increasing the concentration of saccharin. In case of using the essential oil, the affect on the microbe was directly observed within 28 h because the oil affect the permeability of cell membrane of the pathogen but in case of Bacillus, it acts as biological control agent induced resistance of plant by affecting the activity of antioxidant enzymes; peroxidase and chitinase. Saccharin and spore suspension induce systemic protection to rust infection after 72 and 96 hours. The disease index and the phenolic compounds were determined because they play important role in the systemic protection of rust disease 96 h after application. The results showed that the phytoalexin wyerone acid was formed in case of biotic agent (Bacillus subtilis) and the chemical (saccharin) but did not form in case of essential oil (rosemary)

  11. [Specific molecular markers of the rust resistance gene M4 in flax].

    Science.gov (United States)

    Bo, Tian-Yue; Ye, Hua-Zhi; Wang, Shi-Quan; Yang, Jian-Chun; Li, Xiao-Bing; Zhai, Wen-Xue

    2002-10-01

    Flax (Linum usitatissimum L.) is an important fiber and oil-producing crop. Flax rust, caused by Melampsora lini Ehrenb. Lev., occurs worldwide and can cause severe losses in seed yield and fiber quality. In order to identify molecular markers linked to the flax rust resistant gene M4, RAPD analysis of NM4, a near-isogenic line containing the M4 gene, and the recurrent parent Bison was carried out with 540 decamer primers. The primer OPA18 could stably amplify a specific fragment, OPA18(432), in the NM4 line. The OPA18(432) marker was testified to be closely linked to the M4 gene with a genetic distance of 2.1 cM through the analysis of the F2 mapping population derived from a cross of Bison x NM4. Based on the sequence of OPA18(432), the specific PCR primers were designed, and a SCAR marker for the M4 gene was produced. Amplification of different resistant materials proved that the maker is specific for the M4 gene. This marker has been used successfully in marker-assisted selection in the flax breeding program. PMID:12561479

  12. Induced mutations for rust resistance in bread wheat

    International Nuclear Information System (INIS)

    Full text: Seeds of variety ''Lalbahadur'' were treated with 0.04% NMH. M2 plants were inoculated with a mixture of pathotypes of each of the 3 Puccinia species (P. graminis, P. recondita, P. striiformis). Plants with simultaneous resistance to all 3 rusts were selected. Repeated testing in subsequent generations confirmed the resistance. The mutant lines are morphologically similar to the parent cultivar and therefore could be used as components of a multiline variety. Comparison of variety pattern against the Indian pathotypes of rusts suggests that the mutant genes are different from the ones known already in bread wheat. (author)

  13. Critical assessment of the evidence for striped nanoparticles

    CERN Document Server

    Stirling, Julian; Sweetman, Adam; Djuranovic, Predrag; Guo, Quanmin; Granwehr, Josef; Lévy, Raphaël; Moriarty, Philip

    2013-01-01

    There is now a significant body of literature in which it is claimed that stripes form in the ligand shell of suitably functionalised Au nanoparticles. This stripe morphology has been proposed to strongly affect the physicochemical and biochemical properties of the particles. We critique the published evidence for striped nanoparticles in detail, with a particular focus on the interpretation of scanning tunnelling microscopy (STM) data (as this is the only technique which ostensibly provides direct evidence for the presence of stripes). Through a combination of an exhaustive re-analysis of the original data with new experimental measurements of a simple control sample comprising entirely unfunctionalised particles, we conclusively show that all of the STM evidence for striped nanoparticles published to date can instead be explained by a combination of well-known instrumental artefacts, strong observer bias, and/or improper data acquisition/analysis protocols. We also critically re-examine the evidence for the...

  14. Seeing Stripes: Competition and Complexity in High-Temperature Superconductors

    International Nuclear Information System (INIS)

    Superconductivity in layered copper-oxide compounds is remarkable not only because it survives to relatively high temperatures, but especially because it appears when mobile charge carriers are doped into a parent antiferromagnetic insulator. The tendency of the carriers to reduce their kinetic energy by delocalizing competes with the magnetic superexchange between spins on copper ions. One possible consequence of this competition is the segregation of carriers into charge stripes that separate antiferromagnetic domains. An ordered stripe phase has been observed by diffraction experiments in a few special cuprate compounds, and stripe order is found to compete with superconductivity. It has been proposed that quantum-disordered stripes might underlie the superconducting phase. Such a concept clashes with the conventional picture of electronic structure in solids. Some of the challenges of experimentally 'seeing' both static and fluctuating stripes will be discussed.

  15. Pulling polymers adsorbed on a striped surface

    International Nuclear Information System (INIS)

    We consider the adsorption of a linear homopolymer on a striped surface where the monomers have different energies of interaction with each of the two kinds of stripe. In addition, the polymer is subject to a force that tends to desorb the polymer, and the force can be applied at different angles. We consider both a partially directed walk model and a self-avoiding walk model. We solve the problem for the partially directed walk problem essentially completely and give phase diagrams (in the force-temperature plane) for various values of the direction in which the force is applied. The phase diagrams show re-entrance phenomena and, for some force directions, degenerate ground states. We also present a low temperature treatment that helps to interpret the results from the combinatorial solution. For the self-avoiding walk model we present Monte Carlo results and show that the phase diagrams for the partially directed walk and self-avoiding walk are qualitatively similar and, at low temperatures, are in quantitative agreement. (paper)

  16. Deletion mutation as a means of isolating avirulence genes in flax rust.

    Science.gov (United States)

    Timmis, J N; Whisson, D L; Binns, A M; Mayo, M J; Mayo, G M

    1990-05-01

    The interaction between flax rust,Melampsora lini, and its host, flax,Linum usitatissimum, has been extensively studied, and certain genetic features make the system an appropriate choice to utilize in isolating genes conferring avirulence in rust. A mutant that was selected for virulence on Lx plants was isolated, after treatment with gamma rays, from a strain that is genotypicallyA-L5,A-L6,A-L7,A-Lx/A-L5,A-L6,a-L7,a-Lx. These four specificities are tightly linked. Breeding tests showed that this mutant was genotypicallyA-L5,A-L6,a-L7,a-Lx/a-L5,a-L6,a-L7,a-Lx and, when made homozygous for the mutant chromosome, was virulent onL5,L6,L7, andLx. This result excludes somatic recombination as a source of the mutation and indicates deletion as a likely cause. A 250 bp genomic sequence from a strain of rust homozygous for these four linked avirulence genes (A-L5,A-L6,A-L7,A-Lx) was isolated, using a method that allows the differential cloning of the specific DNA sequences located within a deletion in the mutant genome. This clone hybridized to two EcoRI bands in genomic DNA from the strain homozygous for the four linked avirulence genes and from the strain homozygousA-L5 andA-L6 and heterozygousA-L7 andA-Lx, but showed no homology to DNA from the strain carrying the putative chromosomal deletion. The correlation between the genetically characterized deletion mutation and the isolation of a sequence from within a region of chromosome missing from this strain of rust suggests that this 250 bp tract may be part of, or closely linked to, the defined set of avirulence genes. PMID:24226362

  17. EFFECT OF STEM RUST INFECTION ON GRAIN YIELD AND YIELD COMPONENTS OF SOME WHEAT CULTIVARS IN EGYPT

    Directory of Open Access Journals (Sweden)

    Mamdouh A. Asmmawy

    2013-11-01

    Full Text Available Stem rust, caused by Puccinia graminis f. sp. tritici is an important disease of wheat worldwide. To estimate grain yield losses due to stem rust, replicated experiments including twelve wheat cultivars i.e.  Gemmeiza 7, Gemmeiza 9, Gemmeiza 10, Gemmeiza 11, Sakha 61, Sakha 93, Sakha 94, Sids 12, Sids 13, Giza 168, Misr 1 and Misr 2 were evaluated for adult plant resistance at Sakha Research Station, Kafr El-Sheikh, Egypt during 2011/12 and 2012/13 growing seasons. The field experiment was surrounded by spreader area of highly susceptible varieties i.e. Morroco and Max inoculated with a mixture of stem rust races as a source of inoculum. Disease severity was recorded each 10 days and area under disease progress curve (AUDPC was estimated and ranged from 100 to 475 in 2011/12 and 100 to 750 in 2012/13. It was found that, yield losses ranged between 2.47 % in the wheat cultivar Misr 2 to 6.29 % in the wheat cultivar Sids 12 during 2011/12, while during 2012/13 ranged from 1.96 % in the wheat cultivar Gemmeiza 7 to      8.21 % in the wheat cultivar Misr 1. High correlation was found between yield losses with disease severity and AUDPC.

  18. Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne.

    Science.gov (United States)

    Pfender, W F; Saha, M C; Johnson, E A; Slabaugh, M B

    2011-05-01

    A mapping population was created to detect quantitative trait loci (QTL) for resistance to stem rust caused by Puccinia graminis subsp. graminicola in Lolium perenne. A susceptible and a resistant plant were crossed to produce a pseudo-testcross population of 193 F(1) individuals. Markers were produced by the restriction-site associated DNA (RAD) process, which uses massively parallel and multiplexed sequencing of reduced-representation libraries. Additional simple sequence repeat (SSR) and sequence-tagged site (STS) markers were combined with the RAD markers to produce maps for the female (738 cM) and male (721 cM) parents. Stem rust phenotypes (number of pustules per plant) were determined in replicated greenhouse trials by inoculation with a field-collected, genetically heterogeneous population of urediniospores. The F(1) progeny displayed continuous distribution of phenotypes and transgressive segregation. We detected three resistance QTL. The most prominent QTL (qLpPg1) is located near 41 cM on linkage group (LG) 7 with a 2-LOD interval of 8 cM, and accounts for 30-38% of the stem rust phenotypic variance. QTL were detected also on LG1 (qLpPg2) and LG6 (qLpPg3), each accounting for approximately 10% of phenotypic variance. Alleles of loci closely linked to these QTL originated from the resistant parent for qLpPg1 and from both parents for qLpPg2 and qLpPg3. Observed quantitative nature of the resistance may be due to partial-resistance effects against all pathogen genotypes, or qualitative effects completely preventing infection by only some genotypes in the genetically mixed inoculum. RAD markers facilitated rapid construction of new genetic maps in this outcrossing species and will enable development of sequence-based markers linked to stem rust resistance in L. perenne. PMID:21344184

  19. Inheritance of resistance to Ug99 stem rust in wheat cultivar Norin 40 and genetic mapping of Sr42.

    Science.gov (United States)

    Ghazvini, Habibollah; Hiebert, Colin W; Zegeye, Taye; Liu, Sixin; Dilawari, Mridull; Tsilo, Toi; Anderson, James A; Rouse, Matthew N; Jin, Yue; Fetch, Tom

    2012-08-01

    Stem rust, caused by Puccinia graminis f. sp. tritici, is a devastating disease of wheat. The emergence of race TTKSK (Ug99) and new variants in Africa threatens wheat production worldwide. The best method of controlling stem rust is to deploy effective resistance genes in wheat cultivars. Few stem rust resistance (Sr) genes derived from the primary gene pool of wheat confer resistance to TTKSK. Norin 40, which carries Sr42, is resistant to TTKSK and variants TTKST and TTTSK. The goal of this study was to elucidate the inheritance of resistance to Ug99 in Norin 40 and map the Sr gene(s). A doubled haploid (DH) population of LMPG-6/Norin 40 was evaluated for resistance to the race TTKST. Segregation of 248 DH lines fitted a 1:1 ratio (χ (2) 1:1= 0.58, p = 0.45), indicating a single gene in Norin 40 conditioned resistance to Ug99. This was confirmed by an independent F(2:3) population also derived from the cross LMPG-6/Norin 40 where a 1:2:1 ratio (χ (2)1:2:1 = 0.69, p = 0.71) was observed following the inoculation with race TTKSK. Mapping with DNA markers located this gene to chromosome 6DS, the known location of Sr42. PCR marker FSD_RSA co-segregated with Sr42, and simple sequence repeat (SSR) marker BARC183 was closely linked (0.5 cM) to Sr42. A previous study found close linkage between FSD_RSA and SrCad, a temporarily designated gene that also confers resistance to Ug99, thus Sr42 may be the same gene or allelic. Marker FSD_RSA is suitable for marker-assisted selection (MAS) in wheat breeding programs to improve stem rust resistance, including Ug99. PMID:22580967

  20. Reductive and sorptive properties of sulfate green rust (GRSO4)

    DEFF Research Database (Denmark)

    Nedel, Sorin

    The Fe(II), Fe(III) hydroxide containing sulfate in its structure, called sulfate green rust (GRSO4), can effectively reduce and convert contaminants to less mobile and less toxic forms. However, the ability of GRSO4 to remove positively charged species from solution, via sorption, is very limited...

  1. Crossing borders -- the global dimension of rust monitoring

    Science.gov (United States)

    Rust pathogens are highly mobile trans-boundary organisms capable of rapid, long distance movements, either by wind-assisted or accidental human-mediated transmission. Emergence of new virulent races in one country can very rapidly have implications for other countries or regions. Detection of stem ...

  2. Stripes and electronic quasiparticles in the pseudogap state of cuprate superconductors

    International Nuclear Information System (INIS)

    This article is devoted to a discussion of stripe and electron-nematic order and their connection to electronic properties in the pseudogap regime of copper-oxide superconductors. We review basic properties of these symmetry-breaking ordering phenomena as well as proposals which connect them to quantum-oscillation measurements. Experimental data indicate that these orders are unlikely to be the cause of the pseudogap phenomenon, implying that they occur on top of the pseudogap state which itself is of different origin. Specifically, we discuss the idea that the non-superconducting pseudogap ground state hosts electron-like quasiparticles which coexist with a spin liquid, realizing a variant of a fractionalized Fermi liquid. We speculate on how stripe order in such a pseudogap state might offer a consistent description of ARPES, NMR, quantum-oscillation, and transport data.

  3. Stripes and electronic quasiparticles in the pseudogap state of cuprate superconductors

    Energy Technology Data Exchange (ETDEWEB)

    Vojta, Matthias, E-mail: matthias.vojta@tu-dresden.de [Institut fuer Theoretische Physik, Technische Universitaet Dresden, 01062 Dresden (Germany)

    2012-11-01

    This article is devoted to a discussion of stripe and electron-nematic order and their connection to electronic properties in the pseudogap regime of copper-oxide superconductors. We review basic properties of these symmetry-breaking ordering phenomena as well as proposals which connect them to quantum-oscillation measurements. Experimental data indicate that these orders are unlikely to be the cause of the pseudogap phenomenon, implying that they occur on top of the pseudogap state which itself is of different origin. Specifically, we discuss the idea that the non-superconducting pseudogap ground state hosts electron-like quasiparticles which coexist with a spin liquid, realizing a variant of a fractionalized Fermi liquid. We speculate on how stripe order in such a pseudogap state might offer a consistent description of ARPES, NMR, quantum-oscillation, and transport data.

  4. Temporal progress of southern rust in maize under different environmental conditions

    Directory of Open Access Journals (Sweden)

    Godoy Cláudia V.

    2003-01-01

    Full Text Available The progress of the severity of southern rust in maize (Zea mays caused by Puccinia polysora was quantified in staggered plantings in different geographical areas in Brazil, from October to May, over two years (1995-1996 and 1996-1997. The logistic model, fitted to the data, better described the disease progress curves than the Gompertz model. Four components of the disease progress curves (maximum disease severity; area under the disease progress curve, AUDPC; area under the disease progress curve around the inflection point, AUDPCi; and epidemic rate were used to compare the epidemics in different areas and at different times of planting. The AUDPC, AUDPCi, and the epidemic rate were analyzed in relation to the weather (temperature, relative humidity, hours of relative humidity >90%, and rainfall and recorded during the trials. Disease severity reached levels greater than 30% in Piracicaba and Guaíra in the plantings between December and January. Lower values of AUDPC occurred in later plantings at both locations. The epidemic rate was positively correlated (P 90%. The AUDPC was not correlated with any weather variable. The AUDPCi was negatively related to both variables connected to humidity, but not to rain. Long periods (mostly >13 h day-1 of relative humidity >90% (that corresponded to leaf wetness occurred in Castro. Severity of southern rust in maize has always been low in Castro, thus the negative correlations between disease and the two humidity variables.

  5. Critical assessment of the evidence for striped nanoparticles.

    Directory of Open Access Journals (Sweden)

    Julian Stirling

    Full Text Available There is now a significant body of literature which reports that stripes form in the ligand shell of suitably functionalised Au nanoparticles. This stripe morphology has been proposed to strongly affect the physicochemical and biochemical properties of the particles. We critique the published evidence for striped nanoparticles in detail, with a particular focus on the interpretation of scanning tunnelling microscopy (STM data (as this is the only technique which ostensibly provides direct evidence for the presence of stripes. Through a combination of an exhaustive re-analysis of the original data, in addition to new experimental measurements of a simple control sample comprising entirely unfunctionalised particles, we show that all of the STM evidence for striped nanoparticles published to date can instead be explained by a combination of well-known instrumental artefacts, or by issues with data acquisition/analysis protocols. We also critically re-examine the evidence for the presence of ligand stripes which has been claimed to have been found from transmission electron microscopy, nuclear magnetic resonance spectroscopy, small angle neutron scattering experiments, and computer simulations. Although these data can indeed be interpreted in terms of stripe formation, we show that the reported results can alternatively be explained as arising from a combination of instrumental artefacts and inadequate data analysis techniques.

  6. Critical assessment of the evidence for striped nanoparticles.

    Science.gov (United States)

    Stirling, Julian; Lekkas, Ioannis; Sweetman, Adam; Djuranovic, Predrag; Guo, Quanmin; Pauw, Brian; Granwehr, Josef; Lévy, Raphaël; Moriarty, Philip

    2014-01-01

    There is now a significant body of literature which reports that stripes form in the ligand shell of suitably functionalised Au nanoparticles. This stripe morphology has been proposed to strongly affect the physicochemical and biochemical properties of the particles. We critique the published evidence for striped nanoparticles in detail, with a particular focus on the interpretation of scanning tunnelling microscopy (STM) data (as this is the only technique which ostensibly provides direct evidence for the presence of stripes). Through a combination of an exhaustive re-analysis of the original data, in addition to new experimental measurements of a simple control sample comprising entirely unfunctionalised particles, we show that all of the STM evidence for striped nanoparticles published to date can instead be explained by a combination of well-known instrumental artefacts, or by issues with data acquisition/analysis protocols. We also critically re-examine the evidence for the presence of ligand stripes which has been claimed to have been found from transmission electron microscopy, nuclear magnetic resonance spectroscopy, small angle neutron scattering experiments, and computer simulations. Although these data can indeed be interpreted in terms of stripe formation, we show that the reported results can alternatively be explained as arising from a combination of instrumental artefacts and inadequate data analysis techniques. PMID:25402426

  7. Structure and Charge Hopping Dynamics in Green Rust

    International Nuclear Information System (INIS)

    Green rust is a family of mixed-valent iron phases formed by a number of abiotic and biotic processes under alkaline suboxic conditions. Due to its high Fe2+ content, green rust is a potentially important phase for pollution remediation by serving as a powerful electron donor for reductive transformation. However, mechanisms of oxidation of this material are poorly understood. An essential component of the green rust structure is a mixed-valent brucite-like Fe(OH)2 sheet comprised of a two dimensional network of edge-sharing iron octahedra. Room temperature Mossbauer spectra show a characteristic signature for intermediate valence on the iron atoms in this sheet, indicative of a Fe2+-Fe3+ valence interchange reaction faster than approximately 107s-1. Using Fe(OH)2 as structural analogue for reduced green rust, we performed Hartree-Fock calculations on periodic slab models and cluster representations to determine the structure and hopping mobility of Fe3+ hole polarons in this material, providing a first principles assessment of the Fe2+-Fe3+ valence interchange reaction rate. The calculations show that among three possible symmetry unique iron-to-iron hops within a sheet, a hop to next-nearest neighbors at an intermediate distance of 5.6Angstroms is the fastest. The predicted rate is on the order of 1012 s-1 consistent the Mossbauer-based constraint. All other possibilities, including hopping across interlayer spaces, are predicted to be slower than 107s-1. Collectively, the findings suggest the possibility of hole self-diffusion along sheets as a mechanism for regeneration of lattice Fe2+ sites, consistent with previous experimental observations of edge-inward progressive oxidation of green rust.

  8. Rotational Electrophoresis of Striped Metallic Microrods

    Energy Technology Data Exchange (ETDEWEB)

    Rose, K A; Meier, J A; Dougherty, G M; Santiago, J G

    2005-11-28

    Analytical models are developed for the translation and rotation of metallic rods in a uniform electric field. The limits of thin and thick electric double layers are considered. These models include the effect of stripes of different metals along the length of the particle. Modeling results are compared to experimental measurements for metallic rods. Experiments demonstrate the increased alignment of particles with increasing field strength and the increase in degree of alignment of thin versus thick electric double layers. The metal rods polarize in the applied field and align parallel to its direction due to torques on the polarized charge. The torque due to polarization has a second order dependence on the electric field strength. The particles are also shown to have an additional alignment torque component due to non-uniform densities along their length. The orientation distributions of dilute suspensions of particles are also shown to agree well with results predicted by a rotational convective-diffusion equation.

  9. Comparison of barley stripe mosaic virus strains.

    Science.gov (United States)

    Hafez, Elsayed E; Abdel Aleem, Engy E; Fattouh, Faiza A

    2008-01-01

    BSMV (barley stripe mosaic virus) particles were obtained in a pure state from infected host plant tissues of Hordeum vulgare. The three genomic parities (alpha, beta and gamma) were amplified by PCR using specific primers for each particle; each was cloned. Partial sequence of the alpha, beta and gamma segments was determined for the Egyptian isolate of barley stripe mosaic virus (BSMV AE1). Alignment of nucleotide sequences with that of other known strains of the virus, BSMV type strains (CV17, ND18 and China), and the generation of phylogenetic trees was performed. A low level of homology was detected comparing 467 bp of the a and 643 bp of the segments to that of the other strains, and thus BSMV alpha and beta segments were in separate clusters. However, 1154 bp of the gamma segments of BSMV AE1 showed a high level of homology especially to strain BSMV ND18, as they both formed a distinct cluster. Northern blotting of pure BSMV AE1 virus and H. vulgare-infected tissue were compared using an alpha ND18 specific probe. Western blotting using antibodies specific for the coat protein (CP) and the triple gene block 1 (TGB1) protein, which are both encoded by the beta ND18 segment, still indicated a high level of similarity between proteins produced by BSMV ND18 and AE1. We suggest that the BSMV AE1 isolate is a distinct strain of BSMV which reflects the genetic evolutionary divergence among BSMV strains and members of the Hordeivirus group. PMID:18533473

  10. GENETICS OF STEM RUST RESISTANCE IN THE SPRING WHEAT CULTIVAR THATCHER AND THE ENHANCEMENT OF STEM RUST RESISTANCE BY LR34

    Science.gov (United States)

    Three recombinant inbred line populations from the crosses RL6071/Thatcher, RL6071/RL6058 (Thatcher Lr34), and Thatcher/RL6058, were used to study the genetics of stem rust resistance in Thatcher. Segregation of stem rust resistance in each population was used to determine the number of genes confer...

  11. Assessment of potential impact of the Clinch River Breeder Reactor Plant thermal effluent on the Watts Bar Reservoir striped bass population

    International Nuclear Information System (INIS)

    This report is an assessment of potential adverse impact to striped bass (Morone saxatilis) in Watts Bar Reservoir caused by thermal effluent from operation of the Clinch River Breeder Reactor Plant (CRBRP). The Clinch River arm of Watts Bar Reservoir is occupied by adult striped bass during the warmest months of the year. Concern was raised that operation of the CRBRP, specifically thermal discharges, could conflict with management of striped bass. In all cases examined the thermal plume becomes nearly imperceptible within a short distance from the discharge pipe (about 30 ft [10 m]) compared to river width (about 630 ft [190 m]). Under worst case conditions any presence of the plume in the main channel (opposite side of the river from the discharge) will be confined to the surface layer of the water. An ample portion of river cross sections containing ambient temperature water for passage or residence of adult striped bass will always be available in the vicinity of this thermal effluent. Although a small portion of river cross section would exceed the thermal tolerance of striped bass, the fish would naturally avoid this area and seek out adjacent cooler water. Therefore, it is concluded the CRBRP thermal effluent will not significantly affect the integrity of the striped bass thermal refuge in the Clinch River arm of Watts Bar Reservoir. At this time there is no need to consider alternative diffuser designs and thermal modeling. 8 references, 3 figures, 2 tables

  12. Kinetics of structural rust transformation in environments containing chloride and SO2

    International Nuclear Information System (INIS)

    The behaviour of the rusts produced on low carbon steel exposed in industrial atmospheres, at different distances from the sea, was studied by simulating the wetting-drying cycle in a CEBELCOR type apparatus. Coupons electrode potential was monitored and rust layer was analyzed by gravimetric techniques, optical microscopy and Moessbauer spectroscopy. A particular chloride/sulfur ratio in the atmosphere was found, for which there is a particular behaviour in rust formation. For this ratio, corrosion rates were much less than expected. it is postulated a kinetic mechanism for rust layer formation as the origin of this special behavior. An electrode potential similar to that in a weathering steel was observed, this is reflected in the low corrosion rate obtained. The proposed kinetic mechanism for rust formation under these exposure conditions enables new research lines on layer formation and the development of protective rust for industrial marine atmospheres. (Author) 8 refs

  13. Thermal striping in nuclear reactors: POD analysis of LES simulations and experiment

    Science.gov (United States)

    Merzari, Elia; Alvarez, Andres; Marin, Oana; Obabko, Aleksandr; Lomperski, Steve; Aithal, Shashi

    2015-11-01

    Thermal fatigue caused due to thermal striping impacts design and analyses of a wide-range of industrial apparatus. This phenomena is of particular significance in nuclear reactor applications, primarily in sodium cooled fast reactors. In order to conduct systematic analyses of the thermal striping phenomena a simplified experimental set-up was designed and built at Argonne National Laboratory. In this set-up two turbulent jets with a temperature difference of about 20K were mixed in a rectangular tank. The jets entered the tank via 2 hexagonal inlets. Two different inlet geometries were studied, both experimentally and via high-fidelity LES simulations. Proper Orthogonal Decomposition (POD) was performed on the turbulent velocity field in the tank to identify the most dominant energetic modes. The POD analyses of the experimental data in both inlet geometrical configurations were compared with LES simulations. Detailed POD analyses are presented to highlight the impact of geometry on the velocity and thermal fields. These can be correlated with experimental and numerical data to assess the impact of thermal striping on the design of the upper plenum of sodium-cooled nuclear reactors. ALCF.

  14. Post-deposition control of ferroelastic stripe domains and internal electric field by thermal treatment

    Energy Technology Data Exchange (ETDEWEB)

    Feigl, L.; Iwanowska, M.; Sandu, C. S.; Setter, N. [Ceramics Laboratory, EPFL-Swiss Federal Institute of Technology, Lausanne, CH-1015 Switzerland (Switzerland); Janolin, P.-E. [Laboratoire Structures, Propriétés et Modélisation des Solides, UMR CNRS-École Centrale Paris, Grande Voie des Vignes, 92295 Châtenay-Malabry Cedex (France); Yamada, T. [Department of Materials, Physics and Energy Engineering, Nagoya University, Nagoya 464-8603 (Japan); PRESTO, Japan Science and Technology Agency, 4-1-8 Honcho, Kawaguchi, Saitama 332-0012 (Japan)

    2015-01-19

    The dependence of the formation of ferroelastic stripe domain patterns on the thermal history is investigated by detailed piezoresponse force microscopy and X-ray diffraction experiments after and during annealing of tensile strained tetragonal Pb(Ti,Zr)O{sub 3} epitaxial thin films on DyScO{sub 3} substrates. In particular, the ferroelastic pattern is reversibly interchanged between a cross-hatched and a stripe domain pattern if the films are cooled at different rates after annealing above the formation temperature of a-domains. Different types of 180° and non-180° patterns can be created, depending on the thermal treatment. The changes in the 180° domain structure and lattice parameters are attributed to a change of oxygen vacancy concentration, which results in a modification of the internal electric field and unit cell size, causing also a shift of T{sub C}. Thermal treatment is done on rhombohedral La:BiFeO{sub 3} thin films as well. It is observed that also in these films, appropriate heat treatment modifies the domain pattern and films with a stripe domain pattern can be created, confirming the general validity of the developed model.

  15. Reduction of Uncorrelated Striping Noise—Applications for Hyperspectral Pushbroom Acquisitions

    Directory of Open Access Journals (Sweden)

    Christian Rogass

    2014-11-01

    Full Text Available Hyperspectral images are of increasing importance in remote sensing applications. Imaging spectrometers provide semi-continuous spectra that can be used for physics based surface cover material identification and quantification. Preceding radiometric calibrations serve as a basis for the transformation of measured signals into physics based units such as radiance. Pushbroom sensors collect incident radiation by at least one detector array utilizing the photoelectric effect. Temporal variations of the detector characteristics that differ with foregoing radiometric calibration cause visually perceptible along-track stripes in the at-sensor radiance data that aggravate succeeding image-based analyses. Especially, variations of the thermally induced dark current dominate and have to be reduced. In this work, a new approach is presented that efficiently reduces dark current related stripe noise. It integrates an across-effect gradient minimization principle. The performance has been evaluated using artificially degraded whiskbroom (reference and real pushbroom acquisitions from EO-1 Hyperion and AISA DUAL that are significantly covered by stripe noise. A set of quality indicators has been used for the accuracy assessment. They clearly show that the new approach outperforms a limited set of tested state-of-the-art approaches and achieves a very high accuracy related to ground-truth for selected tests. It may substitute recent algorithms in the Reduction of Miscalibration Effects (ROME framework that is broadly used to reduce radiometric miscalibrations of pushbroom data takes.

  16. Periodic Modulation of the Doping Level in Striped MoS2 Superstructures.

    Science.gov (United States)

    Zhou, Xiebo; Shi, Jianping; Qi, Yue; Liu, Mengxi; Ma, Donglin; Zhang, Yu; Ji, Qingqing; Zhang, Zhepeng; Li, Cong; Liu, Zhongfan; Zhang, Yanfeng

    2016-03-22

    Although the recently discovered monolayer transition metal dichalcogenides exhibit novel electronic and optical properties, fundamental physical issues such as the quasiparticle bandgap tunability and the substrate effects remain undefined. Herein, we present the report of a quasi-one-dimensional periodically striped superstructure for monolayer MoS2 on Au(100). The formation of the unique striped superstructure is found to be mainly modulated by the symmetry difference between MoS2 and Au(100) and their lattice mismatch. More intriguingly, we find that the monolayer MoS2 is heavily n-doped on the Au(100) facet with a bandgap of 1.3 eV, and the Fermi level is upshifted by ∼0.10 eV on the ridge (∼0.2 eV below the conduction band) in contrast to the valley regions (∼0.3 eV below the conduction band) of the striped patterns after high-temperature sample annealing process. This tunable doping effect is considered to be caused by the different defect densities over the ridge/valley regions of the superstructure. Additionally, an obvious bandgap reduction is observed in the vicinity of the domain boundary for monolayer MoS2 on Au(100). This work should therefore inspire intensive explorations of adlayer-substrate interactions, the defects, and their effects on band-structure engineering of monolayer MoS2. PMID:26913990

  17. Online identification guides for Australian smut fungi (Ustilaginomycotina) and rust fungi (Pucciniales)

    OpenAIRE

    Shivas, Roger G.; Beasley, Dean R.; McTaggart, Alistair R.

    2014-01-01

    Interactive identification keys for Australian smut fungi (Ustilaginomycotina and Pucciniomycotina, Microbotryales) and rust fungi (Pucciniomycotina, Pucciniales) are available online at http://collections.daff.qld.gov.au. The keys were built using Lucid software, and facilitate the identification of all known Australian smut fungi (317 species in 37 genera) and 100 rust fungi (from approximately 360 species in 37 genera). The smut and rust keys are illustrated with over 1,600 and 570 images ...

  18. Laboratory studies using naturally occurring "green rust" to aid metal mine water remediation

    OpenAIRE

    Bearcock, Jenny M.; Perkins, William T.; Pearce, Nicholas J.G.

    2011-01-01

    Green rust, an Fe (II) and (III) oxyhydroxy salt, can alter the aqueous oxidation state, mobility and toxicity, of inorganic contaminants and thus could have applications in water treatment. This paper discusses a series of stirred, open batch experiments designed to evaluate green rust, and its oxidised equivalent in this context comparing it to a ferrihydrite/goethite ‘ochre’. Natural green rust was added to different mine waters as either a wet, reduced material or a dry, partially oxidise...

  19. Barley stripe mosaic virus: Structure and relationship to the tobamoviruses

    International Nuclear Information System (INIS)

    Barley stripe mosaic virus (BSMV) is the type member of the genus Hordeivirus, rigid, rod-shaped viruses in the family Virgaviridae. We have used fiber diffraction and cryo-electron microscopy to determine the helical symmetry of BSMV to be 23.2 subunits per turn of the viral helix, and to obtain a low-resolution model of the virus by helical reconstruction methods. Features in the model support a structural relationship between the coat proteins of the hordeiviruses and the tobamoviruses. - Highlights: • We report a low-resolution structure of barley stripe mosaic virus. • Barley stripe mosaic virus has 23.2 subunits per turn of the viral helix. • We compare barley stripe mosaic virus with tobacco mosaic virus

  20. Curcurbita pepo subspecies delineates striped cucumber beetle (Acalymma vittatum) preference

    Science.gov (United States)

    Brzozowski, L; Leckie, B M; Gardner, J; Hoffmann, M P; Mazourek, M

    2016-01-01

    The striped cucumber beetle (Acalymma vittatum (F.)) is a destructive pest of cucurbit crops, and management could be improved by host plant resistance, especially in organic farming systems. However, despite the variation in striped cucumber beetle preference observed within the economically important species, Cucurbita pepo L., plant breeders and entomologists lacked a simple framework to classify and exploit these differences. This study used recent phylogenetic evidence and bioassays to organize striped cucumber beetle preference within C. pepo. Our results indicate preference contrasts between the two agriculturally relevant subspecies: C. pepo subsp. texana and C. pepo subsp. pepo. Plants of C. pepo subsp. pepo were more strongly preferred than C. pepo subsp. texana plants. This structure of beetle preference in C. pepo will allow plant breeders and entomologists to better focus research efforts on host plant non-preference to control striped cucumber beetles. PMID:27347423

  1. Changing the Game: Using Integrative Genomics to Probe Virulence Mechanisms of the Stem Rust Pathogen Puccinia graminis f. sp. tritici.

    Science.gov (United States)

    Figueroa, Melania; Upadhyaya, Narayana M; Sperschneider, Jana; Park, Robert F; Szabo, Les J; Steffenson, Brian; Ellis, Jeff G; Dodds, Peter N

    2016-01-01

    The recent resurgence of wheat stem rust caused by new virulent races of Puccinia graminis f. sp. tritici (Pgt) poses a threat to food security. These concerns have catalyzed an extensive global effort toward controlling this disease. Substantial research and breeding programs target the identification and introduction of new stem rust resistance (Sr) genes in cultivars for genetic protection against the disease. Such resistance genes typically encode immune receptor proteins that recognize specific components of the pathogen, known as avirulence (Avr) proteins. A significant drawback to deploying cultivars with single Sr genes is that they are often overcome by evolution of the pathogen to escape recognition through alterations in Avr genes. Thus, a key element in achieving durable rust control is the deployment of multiple effective Sr genes in combination, either through conventional breeding or transgenic approaches, to minimize the risk of resistance breakdown. In this situation, evolution of pathogen virulence would require changes in multiple Avr genes in order to bypass recognition. However, choosing the optimal Sr gene combinations to deploy is a challenge that requires detailed knowledge of the pathogen Avr genes with which they interact and the virulence phenotypes of Pgt existing in nature. Identifying specific Avr genes from Pgt will provide screening tools to enhance pathogen virulence monitoring, assess heterozygosity and propensity for mutation in pathogen populations, and confirm individual Sr gene functions in crop varieties carrying multiple effective resistance genes. Toward this goal, much progress has been made in assembling a high quality reference genome sequence for Pgt, as well as a Pan-genome encompassing variation between multiple field isolates with diverse virulence spectra. In turn this has allowed prediction of Pgt effector gene candidates based on known features of Avr genes in other plant pathogens, including the related flax rust

  2. Changing the game: using integrative genomics to probe virulence mechanisms of the stem rust pathogen Puccinia graminis f. sp. tritici

    Directory of Open Access Journals (Sweden)

    Melania eFigueroa

    2016-02-01

    Full Text Available The recent resurgence of wheat stem rust caused by new virulent races of Puccinia graminis f. sp. tritici (Pgt poses a threat to food security. These concerns have catalyzed an extensive global effort towards controlling this disease. Substantial research and breeding programs target the identification and introduction of new stem rust resistance (Sr genes in cultivars for genetic protection against the disease. Such resistance genes typically encode immune receptor proteins that recognize specific components of the pathogen, known as avirulence (Avr proteins. A significant drawback to deploying cultivars with single Sr genes is that they are often overcome by evolution of the pathogen to escape recognition through alterations in Avr genes. Thus, a key element in achieving durable rust control is the deployment of multiple effective Sr genes in combination, either through conventional breeding or transgenic approaches, to minimize the risk of resistance breakdown. In this situation, evolution of pathogen virulence would require simultaneous changes in multiple Avr genes in order to bypass recognition. However, choosing the optimal Sr gene combinations to deploy is a challenge that requires detailed knowledge of the pathogen Avr genes with which they interact and the virulence phenotypes of Pgt existing in nature. Identifying specific Avr genes from Pgt will provide screening tools to enhance pathogen virulence monitoring, assess heterozygosity and propensity for mutation in pathogen populations, and confirm individual Sr gene functions in crop varieties carrying multiple effective resistance genes. Towards this goal, much progress has been made in assembling a high quality reference genome sequence for Pgt, as well as a Pan-genome encompassing variation between multiple field isolates with diverse virulence spectra. In turn this has allowed prediction of Pgt effector gene candidates based on known features of Avr genes in other plant pathogens

  3. Sustained eruptions on Enceladus explained by turbulent dissipation in tiger stripes

    Science.gov (United States)

    Kite, Edwin S.; Rubin, Allan M.

    2016-04-01

    Spacecraft observations suggest that the plumes of Saturn’s moon Enceladus draw water from a subsurface ocean, but the sustainability of conduits linking ocean and surface is not understood. Observations show eruptions from “tiger stripe” fissures that are sustained (although tidally modulated) throughout each orbit, and since the 2005 discovery of the plumes. Peak plume flux lags peak tidal extension by ˜1 rad, suggestive of resonance. Here, we show that a model of the tiger stripes as tidally flexed slots that puncture the ice shell can simultaneously explain the persistence of the eruptions through the tidal cycle, the phase lag, and the total power output of the tiger stripe terrain, while suggesting that eruptions are maintained over geological timescales. The delay associated with flushing and refilling of O(1)-m-wide slots with ocean water causes erupted flux to lag tidal forcing and helps to buttress slots against closure, while tidally pumped in-slot flow leads to heating and mechanical disruption that staves off slot freezeout. Much narrower and much wider slots cannot be sustained. In the presence of long-lived slots, the 106-y average power output of the tiger stripes is buffered by a feedback between ice melt-back and subsidence to O(1010) W, which is similar to observed power output, suggesting long-term stability. Turbulent dissipation makes testable predictions for the final flybys of Enceladus by Cassini. Our model shows how open connections to an ocean can be reconciled with, and sustain, long-lived eruptions. Turbulent dissipation in long-lived slots helps maintain the ocean against freezing, maintains access by future Enceladus missions to ocean materials, and is plausibly the major energy source for tiger stripe activity.

  4. SFIO a striped file I/O library for MPI

    OpenAIRE

    Gabrielyan, Emin; Hersch, R. D.

    2001-01-01

    This paper presents the design and evaluation of a Striped File I/O (SFIO) library for parallel I/O within an MPI environment. We present techniques for optimizing communications and disk accesses for small striping factors. Using MPI derived datatype capabilities, we transmit fragmented data over the network by single MPI transfers. We present the I/O performance of the SFIO library on DEC Alpha clusters, both for the Fast Ethernet and for the TNET communication networks.

  5. Effect of Stem Rust on the Quality of Selected Barley Genotypes

    OpenAIRE

    Njau, P. N.; O. D. Otaye; Tabu, I. M.; Mwando, K. E.

    2012-01-01

    Stem rust, (Puccinia graminis f.sp. tritici) is a catastrophic disease of barley. Previously stem-rust-tolerant genes were incorporated in genotypes of wheat grown in Kenya, but in 1999, a new race Ug99 that is virulent to the genes was detected in Uganda. The new race spread rapidly and, in 2001, stem rust Ug99 isolates were detected in Kenya. Although barley is an important crop affected by stem rust, limited work has been done to it. In this study 20 barley cultivars from Kenya and from In...

  6. Inhibitive Performance of a Rust Converter on Corrosion of Mild Steel

    Science.gov (United States)

    Zhao, X. D.; Cheng, Y. F.; Fan, W.; Vladimir, C.; Volha, V.; Alla, T.

    2014-11-01

    In this work, a rust converter consisting of two steps of processing solutions was prepared to convert iron rust of the steel surface into a protective conversion film. The performance of the converter was evaluated in both neutral and acidic solutions by various electrochemical measurements, including potentiodynamic polarization curves and electrochemical impedance spectroscopy, and surface characterization. The effect of temperature was investigated. It was found that the rust converter is able to effectively convert the iron rust into a conversion film, serving as a barrier layer to block corrosive species from reaching the steel surface.

  7. Taxonomy of mayapple rust: the genus Allodus resurrected.

    Science.gov (United States)

    Minnis, Andrew M; McTaggart, Alistair R; Rossman, Amy Y; Aime, M Catherine

    2012-01-01

    Mayapple rust is a common, disfiguring disease that is widespread in temperate eastern North America wherever the host, Podophyllum peltatum, occurs. Puccinia podophylli, the etiological agent of this rust, has been shown to be distantly related to both Puccinia and Uromyces as exemplified by their types. A systematic study was made to determine the generic classification of P. podophylli. Phylogenetic analyses of two rDNA loci from multiple specimens support the recognition of this taxon as a separate genus of Pucciniaceae. Based on historical literature and type material, P. podophylli was found to represent the type of the forgotten genus Allodus and it is correctly named Allodus podophylli. A neotype is designated for Puccinia podophylli Schwein. (≡ Allodus podophylli) and a lectotype is designated for Aecidium podophylli. PMID:22495446

  8. Studies on general resistance to stem rust in wheat

    International Nuclear Information System (INIS)

    Eight cultivars that were thought to have field resistance to stem rust were selected and crossed to produce four four-cultivar hybrids. From those crosses lines were produced that lacked seedling resistance to race 15B-1 of stem rust but had good field resistance to it. They also proved to have field resistance to many other races and it is hoped that the resistance is general. Genetic studies indicated that there is some variation in the lines, but resistance is generally inherited as a quantitative character with several largely recessive genes having small additive effects. This suggests that in an induced mutation programme, no one plant is likely to accumulate sufficient mutant genes that it will appear resistant. (author)

  9. Resistance of European winter wheat germplasm to leaf rust

    OpenAIRE

    Winzeler, Michael; Mesterházy, Ákos; Park, Robert

    2000-01-01

    International audience Seventy two wheat cultivars and breeding lines were tested for at least two years in up to ten European countries for resistance against leaf rust under field conditions. In addition, seedling resistance was determined with local races and with defined isolates to postulate resistance genes. Nine entries (Batis, Capo, RE9001, RE9801, Terza, Toronit, Titlis, Barra, Beaufort) were highly resistant at all locations, and were regarded as excellent sources of resistance f...

  10. Bioprospecting endophytic bacteria for biological control of coffee leaf rust

    OpenAIRE

    Shiomi Humberto Franco; Silva Harllen Sandro Alves; Melo Itamar Soares de; Nunes Flávia Vieira; Bettiol Wagner

    2006-01-01

    Suppression of plant diseases due to the action of endophytic microorganisms has been demonstrated in several pathosystems. Experiments under controlled conditions involving endophytic bacteria isolated from leaves and branches of Coffea arabica L and Coffea robusta L were conducted with the objective of evaluating the inhibition of germination of Hemileia vastatrix Berk. & Br., race II, urediniospores and the control of coffee leaf rust development in tests with leaf discs, detached leaves, ...

  11. Landscape pattern and blister rust infection in whitebark pine (Pinus albicaulis) at alpine treeline, Northern Rocky Mountains, U.S.A.

    OpenAIRE

    Franklin, Lauren Nicole

    2011-01-01

    Whitebark pine (Pinus albicaulis) is a foundation and keystone species at alpine treelines of the northern Rocky Mountains and is threatened by the fungus white pine blister rust (Cronartium ribicola). This disease affects all five-needled white pines, but has caused particularly widespread mortality in whitebark pine. Objectives of this research were: 1) to characterize the landscape structure of the treeline study sites at Divide Mountain in Glacier National Park and at Wyoming Creek in th...

  12. Determining the order of resistance genes against Stagonospora nodorum blotch, Fusarium head blight and stem rust on wheat chromosome arm 3BS

    OpenAIRE

    Thapa, Rima; Brown-Guedira, Gina; Ohm, Herbert W.; Mateos-Hernandez, Maria; Wise, Kiersten A.; Goodwin, Stephen B

    2016-01-01

    Background Stagonospora nodorum blotch (SNB), Fusarium head blight (FHB) and stem rust (SR), caused by the fungi Parastagonospora (synonym Stagonospora) nodorum, Fusarium graminearum and Puccinia graminis, respectively, significantly reduce yield and quality of wheat. Three resistance factors, QSng.sfr-3BS, Fhb1 and Sr2, conferring resistance, respectively, to SNB, FHB and SR, each from a unique donor line, were mapped previously to the short arm of wheat chromosome 3B. Based on published rep...

  13. 金属零部件防锈包装技术介绍%Metal Parts Rust-proof Packaging Technology Introd-u ction

    Institute of Scientific and Technical Information of China (English)

    张晓刚

    2014-01-01

    This article describes the great loss in equipment manufacturing industry caused by corrosion and elaborates three rust-proof technologies .%本文介绍了因锈蚀问题给装备制造各行业带来了巨大的损失,了解防锈技术就变得重要起来,针对三种防锈技术进行了阐述。

  14. A perspective of leaf rust race fhprn and its impact on leaf rust resistance in pakistani wheat varieties

    International Nuclear Information System (INIS)

    Leaf rust infected leaves of a widely growing variety Seher-06 were collected in wheat season of 2011-12. The leaf rust isolates were assessed on Thatcher derived Lr isogenic lines and a race FHPRN was identified. Seventy six wheat varieties/lines besides Lr isogenic lines were screened against this race for seedling in glass house and for adult plant resistance at Bahawalpur and Faisalabad during 2012-13. Lr1, Lr2a, Lr9, Lr19, Lr24, Lr10+27+31 (Gatcher) and Lr28 were found completely resistant at both stages against FHPRN. Molecular screening of the wheat varieties/lines indicated the presence of leaf rust resistance genes Lr9 (0%), Lr13 (43%), Lr19 (1%), Lr20 (0%), Lr24 (4%), Lr26 (23%), Lr28 (0%), Lr34 (38%), Lr37 (1%) and Lr47 (1%) in them. Field data suggested that As-02 (Lr10+26+34), Bhakar-02 (Lr13) and Shafaq-06 (Lr10+13+27) were resistant; Pasban-90 (Lr10+13+26+27), Chenab-2000 (Lr10+13+26+27+31+34), Fbd-08 (Lr10), Millat-11 (unknown) and Punjab-11 (unknown) were found moderately resistant; Blue silver (Lr13+14a), Pak-81 (Lr10+23+26+31), Bahawalpur-97 (Lr13+26) and Lasani-08 (Lr13+27+31) were susceptible while Sh-88 (unknown), Auqab-2000 (Lr10+23+26+27+31), Iqbal-2000 (Lr3+10+13+26+27+31), Bahawalpur-2000 (Lr34) and Seher-06 (Lr10+27+31) were found highly susceptible against FHPRN. Present and previous studies revealed the presence of Lr3, 10, 13, 14a, 23, 26, 27, 31 and 34 in the Pakistani wheat varieties yet lacking Lr9, 19, 24 and 28. Therefore, the latter genes and their effective combinations should be incorporated in Pakistani varieties to combat leaf rust effectively. (author)

  15. Evaluation of fatigue damage induced by thermal striping in a T junction using the three dimensional coupling method and frequency response method

    International Nuclear Information System (INIS)

    Thermal fatigue cracking induced by thermal stratification, cycling and striping have been observed in several PWR plants. Especially, thermal striping, the highly fluctuating thermal layer, became one of the significant problems, since it can cause un predicted high cycle thermal fatigue (HCTF) at piping systems. This problem are usually found in T junctions of energy cooling systems, where cold and hot flows with high level of turbulence mix together. Thermal striping can cause the networks of fatigue crack at the vicinity of weld parts and these cracks can propagate to significant depth in a relatively short time. Therefore, thermal striping and fatigue crack initiations should be predicted in advance to prevent the severe failure of piping systems. The final goal of this research is to develop a rational thermal and mechanical model considering thermohydraulic characteristics of thermal striping and an evaluation procedure to predict the initiation of thermal fatigue crack. As a first step, we evaluated the fatigue damage in a T junction using two widely used methods. Then, we analyzed the results of each method and conducted comparisons and verifications

  16. Gene expression patterns of wheat rust resistance gene Lr34/Yr18 indicate novel mode of action

    Science.gov (United States)

    The Lr34/Yr18 resistance gene provides durable, adult-plant, slow-rusting resistance to leaf rust and yellow rust of wheat. Patterns of gene expression were examined by microarray analysis in inoculated and mock-inoculated flag leaves of two pairs of near isogenic lines for Lr34/Yr18 (Thatcher/Thatc...

  17. Postulation of seedling leaf rust resistance genes in 84 Chinese winter wheat cultivars

    Institute of Scientific and Technical Information of China (English)

    REN Xiao-li; LIU Tai-guo; LIU Bo; GAO Li; CHEN Wan-quan

    2015-01-01

    Wheat leaf rust (caused byPuccinia triticina) is one of the most important fungal diseases in China. There are tens of winter wheat cultivars which are approved to be released by the government at a national level and more than 100 wheat cultivars at the provincial level. But there is no information about leaf rust (Lr) genes in these cultivars, which makes it dififcult for farmers and breeders to select which cultivars they should plant in their ifelds and use in their breeding programs. The objec-tive of this paper was to identify the leaf rust resistant genes at seedling stage present in the 84 commercial wheat cultivars from China that have been released in the past few years. A set of 20 near isogenic lines with Thatcher background and 6 lines with knownLr genes were used to test the virulence of 12 races ofP. triticina (Pt). By comparing the infection types (ITs) produced on the 84 cultivars by the 12Pt races with the ITs on the differential sets, theLrgenes were postulated. In addition, 8 molecular markers ofLr genes such asLr9,Lr10,Lr19,Lr20,Lr21,Lr24,Lr26 andLr29, which are closely linked to or co-segregated with theLr gene, were used for further validation of the genes in the 84 Chinese winter wheat cultivars. TwelveLr genes, includingLr1, Lr3,(Lr3bg), (Lr3ka), Lr11, Lr13, Lr14a, Lr16, Lr26, Lr27, Lr30 andLr31 were postulated to be present either singly or in combinations in these Chinese wheat cultivars.Lr3 andLr26 were detected most often in the tested cultivars, with frequencies of 51.2 and 38.1%, respectively. No wheatLr genes were detected in 16 cultivars, and 4 cultivars may carry unknownLr genes other than those used in this study.Lr9,Lr20,Lr21,Lr24,Lr25andLr29 were not present in any of the 84 tested accessions.

  18. Chromosome location, DNA markers and rust resistance of the sunflower gene R5

    Science.gov (United States)

    Sunflower rust, incited by the fungus Puccinia helianthi Schwein., has not been a serious problem for many decades because of successful deployment of effective genes in commercial sunflower hybrids in North America. In the 1980s and early 1990s, however, a shift in virulence of the rust race popula...

  19. MICROCOSM STUDY OF DEGRADATION OF CHLORINATED SOLVENTS ON SYNTHETIC GREEN RUST MINERALS

    Science.gov (United States)

    Green rust minerals contain ferrous ion in their structure that can potentially serve as a chemical reductant for degradation of chlorinated solvents. Green rusts are found in zerovalent iron based permeable reactive barriers and in certain soil and sediments. Some previous labor...

  20. Rusting Evolution of MnCuP Weathering Steel Submitted to Simulated Industrial Atmospheric Corrosion

    Science.gov (United States)

    Hao, Long; Zhang, Sixun; Dong, Junhua; Ke, Wei

    2012-05-01

    The rusting evolution of MnCuP weathering steel in a simulated industrial atmosphere as a function of corrosion duration was investigated by corrosion weight gain, scanning electron microscopy, X-ray diffraction, and electrochemical methods. The results indicate that the corrosion kinetics is related closely to the rust composition and electrochemical properties. The corrosion rate is higher during the first corrosion stage, and it is lower during the second corrosion stage. During the first corrosion stage, the rust layer is in low density, discontinuous, and loose, with a lower relative abundance of α-FeOOH. During the second corrosion stage, a compact and protective inner rust layer forms with a higher relative abundance of α-FeOOH, contributing to enhanced rust layer resistance. The rust initially enhances and then stabilizes the cathodic process, but the anodic process tends to be inhibited by the protective rust layer. Electrochemical impedance spectroscopy tests indicate that it is more scientific to evaluate the rust layer protective ability by charge transfer resistance.

  1. Genome-wide search of stem rust resistance loci at the seedling stage in durum wheat

    Science.gov (United States)

    Puccinia graminis f. sp. tritici, the causative agent of stem rust in wheat, is known to rapidly evolve new virulence to resistance genes. While more than 50 stem rust resistance (Sr) loci have been identified in wheat, only a few remain effective, particularly against the highly virulent race Ug99 ...

  2. Composition and structure of an iron-bearing, layered double hydroxide (LDH) - Green rust sodium sulphate

    DEFF Research Database (Denmark)

    Christiansen, B. C.; Balic-Zunic, T.; Petit, P. O.;

    2009-01-01

    Mixed-valent Fe(II),Fe(III)-layered hydroxide, known as green rust, was synthesized from slightly basic, sodium sulphate solutions in an oxygen-free glove box. Solution conditions were monitored with pH and Eh electrodes and optimized to ensure a pure sulphate green-rust phase. The solid was char...

  3. An accurate DNA marker assay for stem rust resistance gene Sr2 in wheat

    Science.gov (United States)

    The stem rust resistance gene Sr2 has provided broad-spectrum protection against stem rust (Puccinia graminis) since its wide spread deployment in wheat from the 1940s. Because Sr2 confers partial resistance which is difficult to select under field conditions, a DNA marker is desirable that accurate...

  4. Molecular tagging of a novel rust resistance gene R12 in sunflower (Helianthus annuus L.)

    Science.gov (United States)

    Sunflower production in North America has recently suffered economic losses in yield and seed quality from sunflower rust (Puccinia helianthi Schwein.) because of the increasing incidence and lack of resistance to new rust races. RHA 464, a newly released sunflower male fertility restorer line, is r...

  5. Resistance to Ug99 stem rust in six bread wheat cultivars maps to chromosome 6DS

    Science.gov (United States)

    Over 80% of wheat area worldwide is currently grown to varieties that are susceptible to the Ug99 race group of the stem rust fungus. Wheat lines Niini, Tinkio, Coni, Pfunye, Blouk and Ripper were resistant to Ug99 at the seedling and adult plant stages. We mapped stem rust resistance in populations...

  6. The Performance of Multileaf Collimators Evaluated by the Stripe Test

    International Nuclear Information System (INIS)

    The performance of 3 multileaf collimator (MLC) systems (Varian Medical Systems, Elekta, and Siemens Medical Solutions) mounted on 7 different radiotherapy linear accelerators was investigated by a stripe test. The stripe test consisted of 8 adjacent multileaf segments of 2.5 x 40 cm2, enclosed by all leaf pairs. With 6-MV photons, the segments were used to irradiate Agfa CR films. The optical density profile of the irradiated film in the travel direction of the MLC was used to estimate the short- and long-term leaf positioning reproducibility. The short-term reproducibility was found by analyzing 6 consecutive stripe tests. The long-term reproducibility was obtained by performing 3 to 5 stripe tests over 2 months. The short-term reproducibility was mainly within 0.3 mm for all systems. For the long-term reproducibility, the Varian and Elekta MLCs were within 0.4 to 0.5 mm, while the Siemens MLC showed a wider distribution, with values up to 1 mm for some leaf pairs. The inferior long-term reproducibility of the Siemens MLCs was mainly due to a decrease of the segment size with time. In conclusion, the stripe test is a useful method for evaluating MLC performance. Furthermore, the long-term reproducibility varied among the MLC systems investigated.

  7. The performance of multileaf collimators evaluated by the stripe test.

    Science.gov (United States)

    Sastre-Padro, Maria; Lervåg, Christoffer; Eilertsen, Karsten; Malinen, Eirik

    2009-01-01

    The performance of 3 multileaf collimator (MLC) systems (Varian Medical Systems, Elekta, and Siemens Medical Solutions) mounted on 7 different radiotherapy linear accelerators was investigated by a stripe test. The stripe test consisted of 8 adjacent multileaf segments of 2.5 x 40 cm(2), enclosed by all leaf pairs. With 6-MV photons, the segments were used to irradiate Agfa CR films. The optical density profile of the irradiated film in the travel direction of the MLC was used to estimate the short- and long-term leaf positioning reproducibility. The short-term reproducibility was found by analyzing 6 consecutive stripe tests. The long-term reproducibility was obtained by performing 3 to 5 stripe tests over 2 months. The short-term reproducibility was mainly within 0.3 mm for all systems. For the long-term reproducibility, the Varian and Elekta MLCs were within 0.4 to 0.5 mm, while the Siemens MLC showed a wider distribution, with values up to 1 mm for some leaf pairs. The inferior long-term reproducibility of the Siemens MLCs was mainly due to a decrease of the segment size with time. In conclusion, the stripe test is a useful method for evaluating MLC performance. Furthermore, the long-term reproducibility varied among the MLC systems investigated. PMID:19647629

  8. Cell orientation on a stripe-micropatterned surface

    Institute of Scientific and Technical Information of China (English)

    SUN JianGuo; TANG Jian; DING JianDong

    2009-01-01

    Stripe-micropatterned surfaces have recently been a unique tool to study cell orientation. In this paper,we prepared,by the photolithography transfer technique,stable gold (Au) micropatterns on PEG hydrogel surfaces with defined cell-resistant (PEG hydrogel) and cell-adhesive (gold microstripes) proparties. 3T3 fibroblasts were cultured on Au-microstripe surfaces to observe cell adhesion and orientation. Five statistical parameters were defined and used to describe cell orientation on micropatterns.With the increase of inter-stripe distance,the orientational order parameter,the ratio of long and short axes of a cell,and the occupation fraction of cells on stripes increased gradually,whereas the spreading area of a single cell decreased. The abrupt changes of these four parameters did not happen at the same inter-distance. The adhesion ratio of a cell on Au stripes over cell spreading area did not change monotonically as a function of inter-stripe distance. The combination of the 5 statistical parameters represented well the cell orientation behaviors semi-quantitatively.

  9. Characterization of Rust Layer Formed on Low Alloy Steel Exposed in Marine Atmosphere

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    The iron rust phases formed on Iow alloy steels containing different quantities of Cr element have been characterizedusing EPMA, Raman spectroscopy, TEM, optical microscopy etc. The ion selective properties of synthesized rust filmswith the same phase constituent as the atmospheric corrosion products were investigated using self-made apparatus.The results showed that corrosion loss of steels exposed in marine atmosphere decreased rapidly as the Cr contentof the steel was increased. Cr-containing steels were covered by a uniform compacted rust layer composed of fineparticles with an average diameter of several nanometers. Inner rust layer of Cr-containing steel (2 mass fraction)was composed of α-CrxFel-xOOH, with Cr content of about 5 mass fraction. Such rust layer showed cation selectiveproperty, and could depress the penetration of Cl- to contact substrate steel directly.

  10. Characterization of the rust formed on weathering steel exposed to Qinghai salt lake atmosphere

    International Nuclear Information System (INIS)

    The product formed on weathering steel exposed to salt lake atmosphere for 12 months was investigated by X-ray diffraction (XRD), infrared transmission spectroscopy (IRS), scanning electron microscopy (SEM), electron probe micro analyzer (EPMA) and electrochemical techniques. The rust was mainly composed of β-FeOOH, Fe8(O,OH)16Cl1.3 and a little γ-FeOOH. Amorphous δ-FeOOH was only on skyward surface. The rust layer suppressed anodic reaction and facilitated the cathodic reaction. The very small value of rust resistance Rr in this work indicated that the rust had poor protective ability. Cl element was rich in the whole rust layer and played an important role in accelerating the corrosion of weathering steel in salt lake atmosphere

  11. Barberry rust survey – developing tools for diagnosis, analysis and data management

    DEFF Research Database (Denmark)

    Justesen, Annemarie Fejer; Hansen, Jens Grønbech; Hovmøller, Mogens Støvring;

    a rust survey was initiated. The aim was to 1) develop a surveillance protocol 2) develop molecular diagnostic tools for identifying Puccinia spp. from aecial samples, and 3) develop a data management and display system of results as part of the Wheat Rust ToolBox (http....... Due to variable quality of aecial samples DNA extraction was not successful for 40% of the samples. Sequences of EF1α, β-tubulin or ITS were analysed and compared to reference sequences of rust fungi infecting cereals and grasses. The analysis supported the presence of P. graminis s.l., P....... arrhenatheri and P. striiformoides on barberry species. Survey and DNA sample maps with species designation were displayed in the Wheat Rust ToolBox. The future aim is to integrate barberry rust survey data based on molecular diagnostics and infection assays from research groups world-wide in order to gain...

  12. Severe White Pine Blister Rust Infection in Whitebark Pine Alters Mountain Pine Beetle (Coleoptera: Curculionidae) Attack Density, Emergence Rate, and Body Size.

    Science.gov (United States)

    Dooley, Edith M; Six, Diana L

    2015-10-01

    Exotic tree pathogens can cause devastating ecological effects on forests that can be exacerbated when infections increase the likelihood of attack by insects. Current high rates of mortality of whitebark pine (Pinus albicaulis Engelm.) are due to white pine blister rust caused by the exotic fungus, Cronartium ribicola J.C. Fisch, and the native mountain pine beetle (Dendroctonus ponderosae Hopkins). These two mortality agents interact in whitebark pine; mountain pine beetle preferentially selects white pine blister rust-infected whitebark pine over healthy trees, and likelihood of attack has been observed to increase with infection severity. We examined attack and emergence rates, and size and sex ratio of mountain pine beetle in whitebark pines exhibiting varying white pine blister rust infection severities. Mountain pine beetle attack density was lowest on the most severely infected trees, but emergence rates and size of beetles from these trees were greater than those from uninfected and less severely infected trees. Low attack rates on severely infected whitebark pine may indicate these trees have lower defenses and that fewer beetle attacks are needed to kill them. Higher beetle emergence rates from severely infected trees may be due to low intraspecific competition resulting from low attack rates or differences in nutrient quality. PMID:26314009

  13. Development of thermohydraulics computer programs for thermal striping phenomena

    International Nuclear Information System (INIS)

    Two thermohydraulics computer programs AQUA and DINUS-3, which are represented by both time- and volume-averaged transport analysis and direct numerical simulation of turbulence, respectively. were developed and validated for the evaluation of thermal striping phenomena. These codes were incorporated with higher-order difference schemes to approximate the convection terms in conservation equations and adaptive time step size control systems based on the Fuzzy theory to eliminate numerical instabilities. From validation analyses with fundamental experiments in water and sodium, it was concluded that (1) thermal striping conditions such as spatial distributions of the intensity and the frequency of the fluid temperature fluctuations can be estimated efficiently by a combined approach incorporating the AQUA code and the DINUS-3 code, and (2) the thermal striping phenomena for the in-vessel components of actual liquid metal-cooled fast reactors can be evaluated by the numerical method without conventional approaches such as large scale model experiments using sodium. (author)

  14. Effects of water velocity on activity of juvenile striped bass

    Energy Technology Data Exchange (ETDEWEB)

    Bowles, R.R.; Griffith, J.S.; Coutant, C.C.

    1976-07-01

    The swimming activity of juvenile striped bass (Morone saxatilis Walbaum) 8 to 80 mm long was investigated in a test chamber simulating, on a small scale, a fixed-screen cooling water intake structure. As water velocity increased from 0 to 30 cm/sec area and distance traveled by juvenile bass 10 to 80 mm long decreased. However, as water velocity increased from 0 to 3 cm/sec the area and distance covered by larval bass increased. The presence of food increased the activity of larval bass, but decreased the activity of juveniles. Area ranged by striped bass at test velocities ranging from 0 to 30 cm/sec increased in proportion to body length. Juvenile striped bass tested at acclimation temperatures between 20 and 5/sup 0/C experienced a 30% reduction of activity. Activity was also reduced as temperature increased from 20 to 30/sup 0/C.

  15. Color-Stripe Structured Light Robust to Surface Color and Discontinuity

    CERN Document Server

    Lee, Kwang Hee; Lee, Sang Wook

    2015-01-01

    Multiple color stripes have been employed for structured light-based rapid range imaging to increase the number of uniquely identifiable stripes. The use of multiple color stripes poses two problems: (1) object surface color may disturb the stripe color and (2) the number of adjacent stripes required for identifying a stripe may not be maintained near surface discontinuities such as occluding boundaries. In this paper, we present methods to alleviate those problems. Log-gradient filters are employed to reduce the influence of object colors, and color stripes in two and three directions are used to increase the chance of identifying correct stripes near surface discontinuities. Experimental results demonstrate the effectiveness of our methods.

  16. Use of stable carbon and nitrogen isotopes to trace the larval striped bass food chain in the Sacramento-San Joaquin Estuary, California, April to September 1985

    Science.gov (United States)

    Rast, Walter; Sutton, J.E.

    1989-01-01

    To assess one potential cause for the decline of the striped bass fishery in the Sacramento-San Joaquin Estuary, stable carbon and nitrogen isotope ratios were used to examine the trophic structures of the larval striped bass food chain, and to trace the flux of these elements through the food chain components. Study results generally confirm a food chain consisting of the elements, phytoplankton/detritus-->zooplankton/Neomysis shrimp-->larval striped bass. The stable isotope ratios generally become more positive as one progresses from the lower to the higher trophic level food chain components, and no unusual trophic structure was found in the food chain. However, the data indicate an unidentified consumer organism occupying an intermediate position between the lower and higher trophic levels of the larval striped bass food chain. Based on expected trophic interactions, this unidentified consumer would have a stable carbon isotope ratio of about 28/mil and a stable nitrogen isotope ratio of about 8/mi. Three possible feeding stages for larval striped bass also were identified, based on their lengths. The smallest length fish seem to subsist on their yolk sac remnants, and the largest length fish subsist on Neomysis shrimp and zooplankton. The intermediate-length fish represent a transition stage between primary food sources and/or use of a mixture of food sources. (USGS)

  17. Is the rust belt's revival real?

    OpenAIRE

    Gerald H. Anderson

    1992-01-01

    An exploration of the causes of the improved performance of the Great Lakes region in the 1990-91 recession relative to past economic downturns, and a prediction that the mild levels and duration of employment loss posted here during the past two years cannot be assured to continue in the next recession.

  18. Laser light stripe measurements assure correct piston assembly

    Science.gov (United States)

    Stein, Norbert; Frohn, Heiko

    1993-12-01

    Two VIKON-3D optical inspection systems assure the correct assembly of piston rings and guard rings in a new Volkswagen piston/rod assembly line. Both systems use laser light stripe measurements to locate and identify the relevant parts with high accuracy. The piston ring assembly is checked dynamically in video real time using laser light stripe and parallel projection techniques. In addition structured light is used to verify the correct piston/rod assembly. Both inspection systems are fully integrated into the manufacturing line. All types of pistons assembled can be checked without any mechanical changes to the measurement setup.

  19. Bond-centered, bond-ordered stripes in doped antiferromagnets

    OpenAIRE

    Wrobel, P.; Maciag, A; Eder, R.

    2004-01-01

    Motivated by recent inelastic neutron scattering experiments on cuprates, we discuss the formation of bond order in the stripe phase. We suggest that the spin Peierls order emerges in hole-rich domain walls (DWs) formed between hole-poor regions in which long-range antiferromagnetic (AF) correlations exist. On the example of a single stripe we analyze the stability of such structures. The motion of a hole inside the DW which takes the form of a bond ordered ladder is in principle unrestricted...

  20. Distinguishing Patterns of Charge Order: Stripes or Checkerboards

    Energy Technology Data Exchange (ETDEWEB)

    Robertson, J.A.

    2010-04-06

    In two dimensions, quenched disorder always rounds transitions involving the breaking of spatial symmetries so, in practice, it can often be difficult to infer what form the symmetry breaking would take in the 'ideal,' zero disorder limit. We discuss methods of data analysis which can be useful for making such inferences, and apply them to the problem of determining whether the preferred order in the cuprates is 'stripes' or 'checkerboards.' In many cases we show that the experiments clearly indicate stripe order, while in others (where the observed correlation length is short), the answer is presently uncertain.

  1. Allele characterization of genes required for rpg4-mediated wheat stem rust resistance identifies Rpg5 as the R gene.

    Science.gov (United States)

    Arora, D; Gross, T; Brueggeman, R

    2013-11-01

    stop codon at amino acid 161, a single cytosine indel causing a frame shift, and a stop codon at amino acid 217, or an indel that deleted the entire STPK domain. The three P. graminis f. sp. tritici race QCCJ-susceptible lines (Swiss landraces Hv489, Hv492, and Hv611) and the wild barley accession WBDC160 contain rpg5 alleles predicted to encode full-length proteins containing a nonsynonomous nucleotide substitution that results in the amino acid substitution E1287A. This amino acid substitution present in the uncharacterized C-terminal domain is not found in any resistant line and may be important to elicit the resistance reaction. These data suggest that rpg4-mediated resistance against many wheat stem rust pathogen races, including P. graminis f. sp. tritici race TTKSK, rely on the Rpg5 R gene; thus, rpg4- and Rpg5-mediated resistance rely on a common R gene and should not be considered completely distinct. The data also determined that Rpg5 gene-specific molecular markers could be used to detect rpg4-mediated wheat stem rust resistance for marker-assisted selection. PMID:23841622

  2. Effect of Phosphate on the Oxidation of Hydroxysulfate Green Rust

    Science.gov (United States)

    Benali, Omar; Abdelmoula, Mustapha; Génin, Jean.-Marie R.

    2005-04-01

    During Hydroxysulfate green rust GR(SO42) oxidation, lepidocrocite and goethite were formed. The oxidation of GR(SO42-) in the presence of phosphate ions, also involved the formation of poorly crystallized lepidocrocite but not that of goethite. The dissolution of lepidocrocite is inhibited by adsorption of phosphate ions as confirmed by X-ray photoelectron spectroscopy. The formation of the poorly crystallized protective layer against corrosion is effectively due to the phosphate ions which adsorb on the surface of lepidocrocite, and prevents it to turn into a well crystallized oxide.

  3. Registration of ‘Puma’ soft white winter wheat

    Science.gov (United States)

    Resistance to strawbreaker foot rot (caused by Oculimacula yallundae Crous & W. Gams and O. acuformis Crous & W. Gams), stripe rust (caused by Puccinia striiformis Westend. f. sp. tritici Eriks.), and Cephalosporium stripe (caused by Cephalosporium gramineum Nisikado and Ikata) are important traits ...

  4. Inhibitory Effect of Camptothecin against Rice Bacterial Brown Stripe Pathogen Acidovorax avenae subsp. avenae RS-2.

    Science.gov (United States)

    Dong, Qiaolin; Luo, Ju; Qiu, Wen; Cai, Li; Anjum, Syed Ishtiaq; Li, Bin; Hou, Mingsheng; Xie, Guanlin; Sun, Guochang

    2016-01-01

    Camptothecin (CPT) has anticancer, antiviral, and antifungal properties. However, there is a dearth of information about antibacterial activity of CPT. Therefore, in this study, we investigated the inhibitory effect of CPT on Acidovorax avenae subsp. avenae strain RS-2, the pathogen of rice bacterial brown stripe, by measuring cell growth, DNA damage, cell membrane integrity, the expression of secretion systems, and topoisomerase-related genes, as well as the secretion of effector protein Hcp. Results indicated that CPT solutions at 0.05, 0.25, and 0.50 mg/mL inhibited the growth of strain RS-2 in vitro, while the inhibitory efficiency increased with an increase in CPT concentration, pH, and incubation time. Furthermore, CPT treatment affected bacterial growth and replication by causing membrane damage, which was evidenced by transmission electron microscopic observation and live/dead cell staining. In addition, quantitative real-time PCR analysis indicated that CPT treatment caused differential expression of eight secretion system-related genes and one topoisomerase-related gene, while the up-regulated expression of hcp could be justified by the increased secretion of Hcp based on the ELISA test. Overall, this study indicated that CPT has the potential to control the bacterial brown stripe pathogen of rice. PMID:27472315

  5. A reassessment of the risk of rust fungi developing resistance to fungicides.

    Science.gov (United States)

    Oliver, Richard P

    2014-11-01

    Rust fungi are major pathogens of many annual and perennial crops. Crop protection is largely based on genetic and chemical control. Fungicide resistance is a significant issue that has affected many crop pathogens. Some pathogens have rapidly developed resistance and hence are regarded as high-risk species. Rust fungi have been classified as being low risk, in spite of sharing many relevant features with high-risk pathogens. An examination of the evidence suggests that rust fungi may be wrongly classified as low risk. Of the nine classes of fungicide to which resistance has developed, six are inactive against rusts. The three remaining classes are quinone outside inhibitors (QoIs), demethylation inhibitors (DMIs) and succinate dehydrogenase inhibitors (SDHIs). QoIs have been protected by a recently discovered intron that renders resistant mutants unviable. Low levels of resistance have developed to DMIs, but with limited field significance. Older SDHI fungicides were inactive against rusts. Some of the SDHIs introduced since 2003 are active against rusts, so it may be that insufficient time has elapsed for resistance to develop, especially as SDHIs are generally sold in mixtures with other actives. It would therefore seem prudent to increase the level of vigilance for possible cases of resistance to established and new fungicides in rusts. PMID:24616024

  6. Introgression of a leaf rust resistance gene from Aegilops caudata to bread wheat

    Indian Academy of Sciences (India)

    Amandeep Kaur Riar; Satinder Kaur; H. S. Dhaliwal; Kuldeep Singh; Parveen Chhuneja

    2012-08-01

    Rusts are the most important biotic constraints limiting wheat productivity worldwide. Deployment of cultivars with broad spectrum rust resistance is the only environmentally viable option to combat these diseases. Identification and introgression of novel sources of resistance is a continuous process to combat the ever evolving pathogens. The germplasm of nonprogenitor Aegilops species with substantial amount of variability has been exploited to a limited extent. In the present investigation introgression, inheritance and molecular mapping of a leaf rust resistance gene of Ae. caudata (CC) acc. pau3556 in cultivated wheat were undertaken. An F2 population derived from the cross of Triticum aestivum cv.WL711 – Ae. caudata introgression line T291-2 with wheat cultivar PBW343 segregated for a single dominant leaf rust resistance gene at the seedling and adult plant stages. Progeny testing in F3 confirmed the introgression of a single gene for leaf rust resistance. Bulked segregant analysis using polymorphic D-genome-specific SSR markers and the cosegregation of the 5DS anchored markers (Xcfd18, Xcfd78, Xfd81 and Xcfd189) with the rust resistance in the F2 population mapped the leaf rust resistance gene (LrAC) on the short arm of wheat chromosome 5D. Genetic complementation and the linked molecular markers revealed that LrAC is a novel homoeoallele of an orthologue Lr57 already introgressed from the 5M chromosome of Ae. geniculata on 5DS of wheat.

  7. The role of green rust in the environment: a review O papel do green rust no ambiente

    Directory of Open Access Journals (Sweden)

    Lucia H. G. Chaves

    2005-06-01

    Full Text Available Iron(II-iron(III hydroxy-salts known as green rusts (GRs initially were identified and studied as corrosion products of steel and iron. Recently they were discovered as minerals present in hydromorphic soils and sediments. Different studies have suggested that GRs, due to their high reactivity, play an important role in the fate and transport of many contaminants in suboxic soils, sediments and aquifers where microbial reduction rates are limited by low carbon content. Also, GRs have considerable potential for applications such as water-purification processes and gas adsorbents. However, as GRs are only a transient state during the reduction of ferric iron and are converted to more stable forms, it is still necessary to continue studies about their behavior.Hidróxidos de ferro (II-ferro(III conhecidos como "green rust" (GR, inicialmente foram identificados e estudados como sendo os produtos provenientes da corrosão do aço e do ferro. Recentemente esses hidróxidos foram encontrados na forma mineral em solos hidromórficos e em sedimentos. Devido a sua alta reatividade, muitos trabalhos têm mostrado que esses hidróxidos desempenham um importante papel no destino e transporte de muitos contaminantes em solos subóxicos, sedimentos e aqüíferos, onde a taxa de redução microbiana é limitada pelo baixo conteúdo de carbono. Os "green rusts" também podem ser utilizados nos processos de purificação de águas e como adsorventes de gases. Entretanto, como GR são considerados uma fase transitória durante a redução do íon férrico e são, rapidamente, convertidos para formas mais estáveis, é necessário que os estudos sobre seu comportamento continuem.

  8. Endogenous silencing of Puccinia triticina pathogenicity genes through in planta-expressed sequences leads to the suppression of rust diseases on wheat.

    Science.gov (United States)

    Panwar, Vinay; McCallum, Brent; Bakkeren, Guus

    2013-02-01

    Rust fungi are destructive plant pathogens. The draft genomes of several wheat-infecting species have been released and potential pathogenicity genes identified through comparative analyses to fungal pathogens that are amenable to genetic manipulation. Functional gene analysis tools are needed to understand the infection process of these obligate parasites and to confirm whether predicted pathogenicity genes could become targets for disease control. We have modified an Agrobacterium tumefaciens-mediated in planta-induced transient gene silencing (PITGS) assay for use in Triticum spp. (wheat), and used this assay to target predicted wheat leaf rust fungus, Puccinia triticina (Pt) pathogenicity genes, a MAP kinase (PtMAPK1), a cyclophilin (PtCYC1) and calcineurin B (PtCNB), to analyze their roles in disease. Agroinfiltration effectively delivered hairpin silencing constructs in wheat, leading to the generation of fungal gene-specific siRNA molecules in infiltrated leaves, and resulting in up to 70% reduction in transcription of the endogenous target genes in superinfected Pt. In vivo silencing caused severe disease suppression, compromising fungal growth and sporulation, as viewed by confocal microscopy and measured by reductions in fungal biomass and emergence of uredinia. Interestingly, using the same gene constructs, suppression of infection by Puccinia graminis and Puccinia striiformis was also achieved. Our results show that A. tumefaciens-mediated PITGS can be used as a reverse-genetics tool to discover gene function in rust fungi. This proof-of-concept study indicates that the targeted fungal transcripts might be important in pathogenesis, and could potentially be used as promising targets for developing RNA interference-based resistance against rust fungi. PMID:23110316

  9. Soliton stripes in two-dimensional nonlinear photonic lattices

    OpenAIRE

    Neshev, Dragomir; Kivshar, Yuri S.; Martin, Hector; Chen, Zhigang

    2003-01-01

    We study experimentally the interaction of a soliton with a nonlinear lattice. We observe the formation of a novel type of composite soliton created by strong coupling of mutually incoherent periodic and localized beam components. By imposing an initial transverse momentum on the soliton stripe, we observe the effect of lattice compression and deformation.

  10. Siim Nestor soovitab : Supreme 7aastane. White Stripes / Siim Nestor

    Index Scriptorium Estoniae

    Nestor, Siim, 1974-

    2005-01-01

    Kolmik Supreme tähistab oma 7. tegutsemisaastat 24. juunil Von Krahlis, kus toimub ka Krecki debüütalbumi "If You Live" (väljaandjaks ettevõte Umblu) esitlus. Detroidi blues-rock duo White Stripes esitleb oma uut albumit "Get Behind Me Satan" 29. juunil Tallinnas klubis Hollywood

  11. Dissolved oxygen concentration affects hybrid striped bass growth

    Science.gov (United States)

    Management of dissolved oxygen (DO) concentration in ponds at night during the growing season is important because fish growth and yield are greater in ponds with higher nightly DO concentrations. Three studies were conducted to quantify performance traits and metabolic responses of hybrid striped b...

  12. QTL analysis of crown rust resistance in perennial ryegrass under conditions of natural and artificial infection

    DEFF Research Database (Denmark)

    Schejbel, Britt; Jensen, Louise Friis Bach; Xing, Yongzhong; Lübberstedt, Thomas

    2007-01-01

    Crown rust is an economically devastating disease of perennial ryegrass. Both artificial crown rust inoculations, with the possibility of several selection cycles in one year, as well as marker-assisted selection can be used for more efficient breeding of new resistant cultivars. The objective of...... years as well as by artificial pathogen inoculations using a detached leaf assessment. The broad sense heritability values for the field, detached leaf and combined assays were 0.42, 0.56, and 0.64, respectively, indicating a good potential for selection for crown rust resistance. A total of six QTLs...

  13. Green rust formation controls nutrient availability in a ferruginous water column

    DEFF Research Database (Denmark)

    Zegeye, Asfaw; Bonneville, Steeve; Benning, Liane G.;

    2013-01-01

    mechanism for reconstructing ancient ocean chemistry. Such reconstructions depend, however, on precise knowledge of the iron minerals formed in the water column. Here, we combine mineralogical and geochemical analyses to demonstrate formation of the mixed-valence iron mineral, green rust, in ferruginous...... Lake Matano, Indonesia. Carbonated green rust (GR1), along with significant amounts of magnetite, forms below the chemocline via the reduction of ferrihydrite. Further, we show that uptake of dissolved nickel, a key micronutrient required for methanogenesis, is significantly enhanced during green rust...

  14. Corrosion-Resistant Amorphous Alloy Ribbons for Electromagnetic Filtration of Iron Rusts from Water

    OpenAIRE

    Kawashima, Asahi; Asami, Katsuhiko; Sato, Takeaki; Hashimoto, Koji

    1985-01-01

    An attempt was made to use corrosion-resistant amorphous Fe-9Cr-13P-7C alloy ribbons as an electromagnetic filter material for trapping various iron rusts suspended in water at 40℃. The ferrimagnetic Fe_3O_4 rust was trapped with the 100% efficiency and paramagnetic rusts such as α-Fe_2O_3, α-FeOOH and amorphous ferric oxyhydroxide were trapped with certain efficiencies at the magnetic field strength of 0.5-10 kOe. The regeneration of the filter by back-washing was easy. The trapping capacity...

  15. Magnetic coupling and exchange stiffness in striped MnAs films

    Science.gov (United States)

    Tolinski, T.; Lindner, J.; Lenz, K.; Baberschke, K.; Ney, A.; Hesjedal, T.; Pampuch, C.; Däweritz, L.; Koch, R.; Ploog, K. H.

    2004-12-01

    We provide the first direct evidence of interactions in a self-organized pattern of coexisting ferromagnetic and paramagnetic MnAs stripe domains as a function of the coupling strength between the stripes (inter) and within one stripe (intra). The value of the intra exchange constant A = 17.7 × 10-10 erg/cm is determined unambiguously from spin wave resonance. Additionally, in-plane ferromagnetic resonance measurements reveal the presence of a strong coupling between the neighboring stripes, which can dominate the weak intra-stripe interaction.

  16. Stripe order in highly doped La2-xSrxNiO4

    International Nuclear Information System (INIS)

    Stripe order in La2-xSrxNiO4 with 0.289h up to x=1/2. We found that the stripe is most stable at nh=1/3 with ε=1/3 from the analyses of the onset temperatures of the charge and spin orderings and the nh dependence of the correlation length of the stripe order. The stability of an ε=1/3 stripe induces a systematic deviation of ε from the ε=nh law for samples with nh≠=1/3. This deviation affects the stripe order on both sides of the hole concentration with nhh>1/3. (orig.)

  17. Leaf rust (Puccinia triticina) resistance in wheat (Triticum aestivum) cultivars grown in Northern Europe 1992-2002.

    Science.gov (United States)

    Hysing, Shu-Chin; Singh, Ravi P; Huerta-Espino, Julio; Merker, Arnulf; Liljeroth, Erland; Diaz, Oscar

    2006-12-01

    Diversity of resistance to leaf rust caused by Puccinia triticina can be enhanced in wheat (Triticum aestivum) cultivars through a better knowledge of resistance genes that are present in important cultivars and germplasm. Multi-pathotype tests on 84 wheat cultivars grown in Denmark, Finland, Norway and Sweden during 1992-2002 and 39 differential testers enabled the postulation of nine known genes for seedling resistance to leaf rust. Genes Lr1, Lr2a, Lr3, Lr10, Lr13, Lr14a, Lr17, Lr23 and Lr26 were found singly or in combination in 47 of the cultivars (55.9%). The most frequently occurring genes in cultivars grown in Sweden were Lr13 (20.4%), Lr14a (14.8%) and Lr26 (14.8%). Lr14a was the most common gene in cultivars grown in Norway (18.7%), Lr13 in Denmark (35.5%) and Lr10 in Finland (20.0%). Although 28 cultivars (33.3%) exhibited a response pattern that could not be assigned to resistance genes or combinations present in the tester lines, several pathotypes carried virulence and hence these genes or combinations are of limited use. Nine cultivars (10.7%) lacked detectable seedling resistance. One cultivar was resistant to all pathotypes used in the study. PMID:17362328

  18. White pine blister rust resistance in North American, Asian and european species - results from artificial inoculartion trials in Oregon

    Directory of Open Access Journals (Sweden)

    R.A. Sniezko

    2013-12-01

    Full Text Available Dorena Genetic Resource Center (DGRC has used artificial inoculation trials to evaluate progenies of thousands of Pinus monticola and P. lambertiana selections from Oregon and Washington for resistance to white pine blister rust caused by Cronartium ribicola. In addition, early results are now available for P. albicaulis and P. strobiformis. DGRC has also recently evaluated seed orchard progenies of P. strobus, as well as bulked seedlots from P. armandii and P. peuce. The majority of P. monticola, P. lambertiana, P. albicaulis, and P. strobus progenies are very susceptible to blister rust. However, resistance exists in all these species. P. strobiformis showed relatively high levels of resistance for the eight progenies tested. Resistance in P. armandii was mainly reflected in the very low percentage of cankered seedlings; for P. peuce, the high percentage of cankered seedlings alive three years after inoculation was notable. R-genes are present in some of the North American five-needle pine species, but partial resistance traits (e.g. bark reaction will play a major role in breeding activities for P. monticola and P. lambertiana and will likely be the key to developing durable resistance.

  19. Impact of ectomycorrhizal colonization and rust infection on the secondary metabolism of poplar (Populus trichocarpa x deltoides).

    Science.gov (United States)

    Pfabel, Cornelia; Eckhardt, Kai-Uwe; Baum, Christel; Struck, Christine; Frey, Pascal; Weih, Martin

    2012-11-01

    Fungal colonization can significantly affect the secondary metabolism of the host plants. We tested the impact of a common below-ground symbiosis, i.e., ectomycorrhiza formation, on poplar leaf chemical components that are involved in the defence against a common disease, i.e., rust fungi, in N-deficient soil. A rust-susceptible poplar clone (Populus trichocarpa × deltoides 'Beaupré') was (a) non-associated with ectomycorrhizal fungus (EM) Hebeloma mesophaeum (Pers.) Quélet MÜN and non-infected with rust fungus Melampsora larici-populina Kleb. (isolate 98AG31), (b) associated with EM, (c) inoculated with rust fungus and (d) associated with EM and inoculated with rust fungus. Poplar leaves were analysed by photometric and mass spectrometric techniques (liquid chromatography-tandem mass spectrometry (LC-MS/MS), pyrolysis-field ionization mass spectrometry (Py-FIMS)). Both rust infection and mycorrhiza formation led to increased proportions of condensed tannins in relation to total phenolics (13% in the control, 18-19% in the fungal treatments). In contrast, salicylic acid concentration (6.8 µg g(-1) in the control) was higher only in the rust treatments (17.9 and 25.4 µg g(-1) with rust infection). The Py-FIMS analysis revealed that the rust-infected treatments were significantly separated from the non-rust-infected treatments on the basis of six flavonoids and one lipid. The relative abundance of these components, which have known functions in plant defence, was decreased after rust infection of non-mycorrhizal plants, but not in mycorrhizal plants. The results indicate that the ectomycorrhizal formation compensated the rust infection by a decrease in the flavonoid syntheses. The study provides new evidence for an interactive response of mycorrhizal colonization and infection with rust fungi in the metabolism of poplar. PMID:23065191

  20. Neutron scattering studies on stripe phases in non-cuprate materials

    Science.gov (United States)

    Ulbrich, Holger; Braden, Markus

    2012-11-01

    Several non-cuprates layered transition-metal oxides exhibit clear evidence for stripe ordering of charges and magnetic moments. Therefore, stripe order should be considered as the typical consequence of doping a layered Mott insulator, but only in cuprates stripe order or fluctuating stripes coexist with metallic properties. A linear relationship between the charge concentration and the incommensurate structural and magnetic modulations can be considered as the finger print of stripe ordering with localized degrees of freedom. In nickelates and in cobaltates with K2NiF4 structure, doping suppresses the nearest-neighbor antiferromagnetism and induces stripe order. The higher amount of doping needed to induce stripe phases in these non-cuprates series can be attributed to reduced charge mobility. Also manganites exhibit clear evidence for stripe phases with further enhanced complexity, because orbital degrees of freedom are involved. Orbital ordering is the key element of stripe order in manganites since it is associated with the strongest structural distortion and with the perfectly fulfilled relation between doping and incommensurability. Magnetic excitations in insulating stripe phases exhibit strong similarity with those in the cuprates, but only for sufficiently short magnetic correlation lengths reflecting well-defined magnetic stripes that are only loosely coupled.

  1. The Representation of Orientation in Macaque V2: Four Stripes Not Three.

    Science.gov (United States)

    Felleman, Daniel J; Lim, Heejin; Xiao, Youping; Wang, Yi; Eriksson, Anastasia; Parajuli, Arun

    2015-09-01

    Area V2 of macaque monkeys is traditionally thought to consist of 3 distinct functional compartments with characteristic cortical connections and functional properties. Orientation selectivity is one property that has frequently been used to distinguish V2 stripes, however, this receptive field property has been found in a high percentage of neurons across V2 compartments. Using quantitative intrinsic cortical imaging, we derived maps of preferred orientation, orientation selectivity, and orientation gradient in thin stripes, thick stripes, and interstripes in area V2. Orientation-selective responses were found in each V2 stripe, but the magnitude and organization of orientation selectivity differed significantly from stripe to stripe. Remarkably, the 2 pale stripes flanking each cytochrome oxidase dense stripe differed significantly in their representation of orientation resulting in their distinction as type-I and type-II interstripes. V2 orientation maps are characterized by clockwise and anticlockwise "orientation pinwheels", but unlike V1, they are not homogeneously distributed across V2. Furthermore, V2 stripes contain large-scale sequences of preferred orientation. These analyses demonstrate that V2 consists of 4 distinct functional compartments; thick stripes and type-II interstripes, which are strongly orientation selective and thin stripes and type-I interstripes, which are significantly less selective for orientation and exhibit larger orientation gradient magnitudes. PMID:24614951

  2. Pyramiding the disease resistant genes to southern rust and stalk rot in maize(Zea mays L.) with marker-assisted selection

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Southern corn rust(SCR) caused by Puccinia polysora Underw and maize stalk rot caused by Pythium inflatum Matthews(MSR-2) are two destructive diseases of maize(Zea mays L.) in China.Our previous studies indicated that maize inbred line Qi319 is highly resistant to SCR but susceptible to MSR-2,while inbred line 1145 is highly resistant to MSR-2 but susceptible to SCR.The SCR resistant gene(RppQ) in Qi319 and MSR-2 resistant gene(Rpi1) in 1145 have been mapped on chromosome 10 and 4 respectively.In this resea...

  3. Recent invasion of world-wide wheat growing areas by two aggressive strains of Puccinia striiformis

    DEFF Research Database (Denmark)

    Walter, Stephanie; Ali, Sajid; Justesen, Annemarie Fejer;

    2012-01-01

    The ever more frequent and severe large-scale epidemics of wheat yellow/stripe rust disease (caused by Puccinia striiformis) pose a severe threat to the world’s wheat production (Hovmøller et al. 2010). The onset of a new series of world-wide wheat yellow rust epidemics in 2000 has been linked to...

  4. De-Striping for Tdiccd Remote Sensing Image Based on Statistical Features of Histogram

    Science.gov (United States)

    Gao, Hui-ting; Liu, Wei; He, Hong-yan; Zhang, Bing-xian; Jiang, Cheng

    2016-06-01

    Aim to striping noise brought by non-uniform response of remote sensing TDI CCD, a novel de-striping method based on statistical features of image histogram is put forward. By analysing the distribution of histograms,the centroid of histogram is selected to be an eigenvalue representing uniformity of ground objects,histogrammic centroid of whole image and each pixels are calculated first,the differences between them are regard as rough correction coefficients, then in order to avoid the sensitivity caused by single parameter and considering the strong continuity and pertinence of ground objects between two adjacent pixels,correlation coefficient of the histograms is introduces to reflect the similarities between them,fine correction coefficient is obtained by searching around the rough correction coefficient,additionally,in view of the influence of bright cloud on histogram,an automatic cloud detection based on multi-feature including grey level,texture,fractal dimension and edge is used to pre-process image.Two 0-level panchromatic images of SJ-9A satellite with obvious strip noise are processed by proposed method to evaluate the performance, results show that the visual quality of images are improved because the strip noise is entirely removed,we quantitatively analyse the result by calculating the non-uniformity ,which has reached about 1% and is better than histogram matching method.

  5. Visualization analysis of tiger-striped flow mark generation phenomena in injection molding

    Science.gov (United States)

    Owada, Shigeru; Yokoi, Hidetoshi

    2016-03-01

    The generation mechanism of tiger-striped flow marks of polypropylene (PP)/rubber/talc blends in injection molding was investigated by dynamic visualization analysis in a glass-inserted mold. The analysis revealed that the behavior of the melt flow front correlates with the flow mark generation. The cloudy part in the tiger-striped flow marks corresponded to the low transcription rate area of the melt diverging near the cavity wall, while the glossy part corresponded to the high transcription rate area of the melt converging toward the cavity wall side. The melt temperature at the high transcription rate area was slightly lower than that at the low transcription rate area. These phenomena resulted due to the difference in the temperature of the melt front that was caused by the asymmetric fountain flow. These results suggest the followings; At the moment when the melt is broken near the one side of cavity wall due to piling the extensional strains up to a certain level, the melt spurts out near the broken side. It results in generating asymmetric fountain flow temporarily to relax the extensional front surface, which moves toward the opposite side to form the high transcription area.

  6. Sustained eruptions on Enceladus explained by turbulent dissipation in tiger stripes

    CERN Document Server

    Kite, Edwin S

    2016-01-01

    Spacecraft observations suggest that the plumes of Saturn's moon Enceladus draw water from a subsurface ocean, but the sustainability of conduits linking ocean and surface is not understood. Observations show sustained (though tidally modulated) fissure eruptions throughout each orbit, and since the 2005 discovery of the plumes. Peak plume flux lags peak tidal extension by $\\sim$1 radian, suggestive of resonance. Here we show that a model of the tiger stripes as tidally-flexed slots that puncture the ice shell can simultaneously explain the persistence of the eruptions through the tidal cycle, the phase lag, and the total power output of the tiger stripe terrain, while suggesting that the eruptions are maintained over geological timescales. The delay associated with flushing and refilling of \\emph{O}(1) m-wide slots with ocean water causes erupted flux to lag tidal forcing and helps to buttress slots against closure, while tidally pumped in-slot flow leads to heating and mechanical disruption that staves off ...

  7. Rust characterisation of ancient iron artefacts exposed to indoor atmospheric corrosion

    International Nuclear Information System (INIS)

    A corpus of eleven iron artefacts exposed several centuries to indoor atmospheric corrosion has been collected. The general morphology of the rust layers has been studied as well as the iron substrate. Second phase particles (slag inclusions) and minor elements (carbon, phosphorus) were detected. The compositions of the rust layers have been analysed by EPMA on cross sections. The distribution of endogenous and exogenous elements has been studied. An original analytical method (micro XRD under synchrotron radiation) was used to study the structure distribution on thin film transverse sections. Using this technique, the different constitutive crystallized phases in the rust layer have been localised. Goethite has been detected preferentially in inner layers, lepidocrocite in outer layers. The goethite to lepidocrocite content ratio in the rust layers, the so-called protective ability index α/γ has been calculated and compared to values found in literature. (authors)

  8. Online identification guides for Australian smut fungi (Ustilaginomycotina) and rust fungi (Pucciniales).

    Science.gov (United States)

    Shivas, Roger G; Beasley, Dean R; McTaggart, Alistair R

    2014-12-01

    Interactive identification keys for Australian smut fungi (Ustilaginomycotina and Pucciniomycotina, Microbotryales) and rust fungi (Pucciniomycotina, Pucciniales) are available online at http://collections.daff.qld.gov.au. The keys were built using Lucid software, and facilitate the identification of all known Australian smut fungi (317 species in 37 genera) and 100 rust fungi (from approximately 360 species in 37 genera). The smut and rust keys are illustrated with over 1,600 and 570 images respectively. The keys are designed to assist a wide range of end-users including mycologists, plant health diagnosticians, biosecurity scientists, plant pathologists, and university students. The keys are dynamic and will be regularly updated to include taxonomic changes and incorporate new detections, taxa, distributions and images. Researchers working with Australian smut and rust fungi are encouraged to participate in the on-going development and improvement of these keys. PMID:25734028

  9. 16 CFR 23.10 - Misuse of “corrosion proof,” “noncorrosive,” “corrosion resistant,” “rust proof,” “rust resistant...

    Science.gov (United States)

    2010-01-01

    ... INDUSTRIES § 23.10 Misuse of “corrosion proof,” “noncorrosive,” “corrosion resistant,” “rust proof,” “rust resistant,” etc. (a) It is unfair or deceptive to: (1) Use the terms “corrosion proof,” “noncorrosive... the product will be immune from rust and other forms of corrosion during the life expectancy of...

  10. Genetically engineered stem rust resistance in barley using the Rpg1 gene

    OpenAIRE

    Horvath, Henriette; Rostoks, Nils; Brueggeman, Robert; Steffenson, Brian; von Wettstein, Diter; Kleinhofs, Andris

    2002-01-01

    The stem-rust-susceptible barley cv. Golden Promise was transformed by Agrobacterium-mediated transformation of immature zygotic embryos with the Rpg1 genomic clone of cv. Morex containing a 520-bp 5′ promoter region, 4,919-bp gene region, and 547-bp 3′ nontranscribed sequence. Representatives of 42 transgenic barley lines obtained were characterized for their seedling infection response to pathotype Pgt-MCC of the stem rust fungus Puccinia graminis f. sp. tritici. Golden Promise was converte...

  11. Comparison of various stress responses in oat in compatible and nonhost resistant interactions with rust fungi

    OpenAIRE

    Fink, Werner; Liefland, Mathias; Mendgen, Kurt

    1990-01-01

    The role of extracellular beta-1,3-glucanases and chitinases was investigated in oat leaves after infection with different rust fungi. The oat leaves (Avena sativa L .) were inoculated with the compatible rust Puccinia coronata f. sp . avenae and the two nonpathogens Puccinia recondita f. sp. tritici and Puccinia graminis f. sp. tritici. No alterations in enzyme activities were found in the compatible interaction . In the nonhost interaction with P. recondita ff sp. tritici beta-1,3-glucanase...

  12. Mining and survey of simple sequence repeats in wheat rust Puccinia sp

    OpenAIRE

    Singh, Rajender; Pandey, Bharati; Danishuddin, Mohd; Sheoran, Sonia; Sharma, Pradeep; Chatrath, Ravish

    2011-01-01

    The abundance and inherent potential for extensive allelic variations in simple sequence repeats (SSRs) or microsatellites resulted in valuable source for genetic markers in eukaryotes. In this study, we analyzed and compared the abundance and organisation of SSR in the genome of two important fungal pathogens of wheat, brown or leaf rust (Puccinia triticina) and black or stem rust (Puccinia graminis f. sp. tritici). P. triticina genome with two fold genome size as compared to P. graminis tri...

  13. Obligate biotrophy features unraveled by the genomic analysis of rust fungi

    OpenAIRE

    Lin, Yao-Cheng; Aerts, Andrea; Tisserant, Emilie; Veneault-Fourrey, Claire; Joly, Davis L.; Hacquard, Stéphane; Amselem, Joelle; Cantarel, Brandi; Chin, Readman; Coutinho, Pedro M; Feau, Nicolas; Field, Matthew; Frey, Pascal; Gelhaye, Éric; Goldberg, Jonathan

    2011-01-01

    Rust fungi are some of the most devastating pathogens of crop plants. They are obligate biotrophs, which extract nutrients only from living plant tissues and cannot grow apart from their hosts. Their lifestyle has slowed the dissection of molecular mechanisms underlying host invasion and avoidance or suppression of plant innate immunity. We sequenced the 101-Mb genome of Melampsora larici-populina, the causal agent of poplar leaf rust, and the 89-Mb genome of Puccinia graminis f. sp. tritici,...

  14. Evaluation of wheat (Triticum aestivum) stem rust (Puccinia graminis tritici) resistant mutants obtained by gamma radiation

    International Nuclear Information System (INIS)

    Work was initiated in 1974 with the objective of attempting selection of mutant lines resistant to stem rust (Puccinia graminis tritici) from wheat variety BH-1146. Seeds were irradiated with 60Co using the CENA source and selection was made from M2 progenies. The selected plants showed a low level of symptons of rust infection. After further inoculation and selection, eight lines were considered mutants and named TICENA. Studies of the productivity of the mutants were initiated under different conditions of cultivation in Brazil. The productivity and reaction to stem rust and leaf rust (Puccinia recondita) of the mutants were compared with the performance of the original variety. One of the mutant lines (TICENA-4) showed resistance to stem rust as well as low incidence of symptons of stem rust at all sites, whereas other lines showed varying degrees of resistance according to the site of cultivation. Three lines showed a tendency toward higher productivity than the original cultivar, whereas the productivity of others was lower than or equal to that of the original cultivar. (Author)

  15. Rust resistance evaluation of advanced wheat (triticum aestivum l.) genotypes using pcr-based dna markers

    International Nuclear Information System (INIS)

    The most effective and environmental friendly approach for the control of wheat rust disease is the use of resistant genotypes. The present study was conducted to explore rust resistance potential of 85 elite wheat genotypes (36 varieties and 49 advanced lines) using various types of DNA markers like STS, SCAR and SSR. DNA markers linked with different genes conferring resistance to rusts (Leaf rust=Lr, Yellow rust=Yr and Stem rust=Sr) were employed in this study. A total of 18 genes, consisting of eleven Lr (lr1, lr10, lr19, lr21, lr28, lr34, lr39, lr46, lr47, lr51 and lr52), four Yr (yr5, yr18, yr26 and yr29) and three Sr genes (sr2, sr29, and sr36) were studied through linked DNA markers. Maximum number of Lr genes was found in 17 advanced lines and 9 varieties, Yr genes in 26 advanced lines and 20 wheat varieties, and Sr genes in 43 advanced lines and 27 varieties. Minimum number of Lr genes was found in advanced line D-97 and variety Kohinoor-83, Yr genes in wheat variety Bwp-97 and Sr genes in 6 advanced lines and 8 varieties. Molecular data revealed that genotypes having same origin, from a specified area showed resistance for similar type of genes. In this study, an average similarity of 84% was recorded among wheat genotypes. Out of 18 loci, 15 were found to be polymorphic. (author)

  16. Evaluation of wheat (Triticum aestivum) stem rust (Puccinia graminis tritici) resistant mutants obtained by gamma radiation

    Energy Technology Data Exchange (ETDEWEB)

    Veiga, A.A.; Felicio, J.C.; Camargo, C.E. (Instituto Agronomico de Campinas (Brazil)); Barros, B.C.; Tulmann Neto, A.; Menten, J.O.M.; Ando, A. (Centro de Energia Nuclear na Agricultura, Piracicaba (Brazil))

    Work was initiated in 1974 with the objective of attempting selection of mutant lines resistant to stem rust (Puccinia graminis tritici) from wheat variety BH-1146. Seeds were irradiated with /sup 60/Co using the CENA source and selection was made from M/sub 2/ progenies. The selected plants showed a low level of symptons of rust infection. After further inoculation and selection, eight lines were considered mutants and named TICENA. Studies of the productivity of the mutants were initiated under different conditions of cultivation in Brazil. The productivity and reaction to stem rust and leaf rust (Puccinia recondita) of the mutants were compared with the performance of the original variety. One of the mutant lines (TICENA-4) showed resistance to stem rust as well as low incidence of symptons of stem rust at all sites, whereas other lines showed varying degrees of resistance according to the site of cultivation. Three lines showed a tendency toward higher productivity than the original cultivar, whereas the productivity of others was lower than or equal to that of the original cultivar.

  17. Management of Brown Leaf Rust, Puccinia recondita of Wheat Using Natural Products and Biocontrol Agents

    Directory of Open Access Journals (Sweden)

    Hamdy A. Eldoksch

    2001-01-01

    Full Text Available The effect of biocontrol agents and natural products on brown leaf rust, Puccinia recondita f.sp. tritici, of wheat were studied under greenhouse and field conditions in 1998/99 and 1999/2000 seasons. Under greenhouse conditions, application of Plant guard (Trichoderma harizianum, Rhizo-N (Bacillus subtilis and the yeast (Saccharomyces cerevisiae gave reasonable control of leaf rust severity with disease reduction percentages of 64.29, 57.14 and 19.14%, respectively. Field application of formulated natural products during two successive seasons gave effective control of brown rust disease. Natural oil, peppermint oil, jojoba oil, eucalyptus oil and chenopodium oil were the most effective treatments in reducing leaf rust severity and also in improving grain yield. All natural products significantly reduced the rust disease incidence in wheat by 55.5-98.2% and subsequently led to an increase in the grain yield that ranged from 8.5-51.8%. Of the biocontrol agents applied in the field, Plant guard was the most effective treatment followed by yeast and then Rhizo-N. These bioagents significantly improved grain yield and increased 100 kernel weight relative to the untreated control. Sumi-8 fungicide (diniconazole showed complete protection against rust disease incidence in both greenhouse and field trials.

  18. A mutagenesis-derived broad-spectrum disease resistance locus in wheat

    OpenAIRE

    Campbell, Jackie; Zhang, Hongtao; Giroux, Michael J.; Feiz, Leila; Jin, Yue; Wang, Meinan; Chen, Xianming; Huang, Li

    2012-01-01

    Wheat leaf rust, stem rust, stripe rust, and powdery mildew caused by the fungal pathogens Puccinia triticina, P. graminis f. sp. tritici, P. striiformis f. sp. tritici, and Blumeria graminis f. sp. tritici, respectively, are destructive diseases of wheat worldwide. Breeding durable disease resistance cultivars rely largely on continually introgressing new resistance genes, especially the genes with different defense mechanisms, into adapted varieties. Here, we describe a new resistance gene ...

  19. Puccinia chunjii, a close relative of the cereal stem rusts revealed by molecular phylogeny and morphological study.

    Science.gov (United States)

    Liu, Miao; Hambleton, Sarah

    2012-01-01

    A rust specimen with macroscopic similarities to the cereal stem rusts was collected on Elymus sp. from Gansu province, China. Phylogenetic analyses of ITS and COI DNA sequences indicated the fungus was closely related but distinct as a strongly supported sister taxon to the Puccinia graminis species complex. Microscopic examination revealed diagnostic teliospore characteristics, differentiating it from P. graminis and other morphologically similar rusts. Herein, we designate a name for this new lineage, Puccinia chunjii sp. nov. PMID:22492408

  20. Striping noise mitigation in ATMS brightness temperatures and its impact on cloud LWP retrievals

    Science.gov (United States)

    Ma, Yuan; Zou, Xiaolei

    2015-07-01

    Advanced Technology Microwave Sounder (ATMS) on board Suomi National Polar-orbiting Partnership (NPP) satellite provides global distributions of microwave brightness temperature measurements at 22 temperature and humidity sounding channels twice daily. However, the differences between observations and brightness temperature simulations exhibit a systematic along-track striping noise for all channels. In this study, a set of 22 "optimal" filters is designed to remove the striping noise in different channels. It is shown that the original method for ATMS striping noise mitigation developed by Qin et al. can be simplified and made suitable for use in an operational context. Impacts of striping noise mitigation on small-scale weather features are investigated by comparing ATMS cloud liquid water path (LWP) retrieved before and after striping noise mitigation. It is shown that the optimal filters do not affect small-scale cloud features while smoothing out striping noise in brightness temperatures. It is also shown that the striping noise is present in the LWP retrievals if the striping noise in brightness temperatures of ATMS channels 1 and 2 is not removed. The amplitude of the striping noise in LWP is linearly related to the magnitude of striping noise in ATMS brightness temperature observations.

  1. Induced mutants in beans and peas resistant to rust

    International Nuclear Information System (INIS)

    Beans (Phaseolus vulgaris) and peas (Pisum sativum) are important leguminous vegetable crops in Egypt. The area planted with beans is about 40,000 acres and peas 22,000 acres. These crops suffer from several diseases, particularly rusts, (Uromyces phaseoli/Uromyces pisi), which are mainly spread in northern Egypt. In our mutation induction programme we used 60 Co gamma rays and ethyl methane sulphonate (EMS). Bean and pea seeds were soaked in water for two hours before exposure to 8, 10 and 12 krad. For chemical treatments, bean and pea seeds were soaked in water for eight hours and then treated with 0.5 and 1.5% EMS for four hours. The M1 was cultivated in 1978

  2. Adult neurogenesis in the four-striped mice (Rhabdomys pumilio)

    Institute of Scientific and Technical Information of China (English)

    Olatunbosun O Olaleye; Amadi O Ihunwo

    2014-01-01

    In this study, we investigated non-captive four-striped mice (Rhabdomys pumilio) for evidence that adult neurogenesis occurs in the adult brain of animal models in natural environment. Ki-67 (a marker for cell proliferation) and doublecortin (a marker for immature neurons) immunos-taining conifrmed that adult neurogenesis occurs in the active sites of subventricular zone of the lateral ventricle with the migratory stream to the olfactory bulb, and the subgranular zone of the dentate gyrus of the hippocampus. No Ki-67 proliferating cells were observed in the striatum substantia nigra, amygdala, cerebral cortex or dorsal vagal complex. Doublecortin-immunore-active cells were observed in the striatum, third ventricle, cerebral cortex, amygdala, olfactory bulb and along the rostral migratory stream but absent in the substantia nigra and dorsal vagal complex. The potential neurogenic sites in the four-striped mouse species could invariably lead to increased neural plasticity.

  3. Transport signatures of electronic-nematic stripe phases.

    Science.gov (United States)

    Kee, Hae-Young; Puetter, Christoph M; Stroud, David

    2013-05-22

    Electronic-nematic phases are broadly characterized by spontaneously broken rotational symmetry. Although they have been widely recognized in the context of high temperature cuprates, bilayer ruthenates, and iron-based superconductors, the focus so far has been exclusively on the uniform nematic phase. Recently, however, it was proposed that on a square lattice a nematic instability in the d-wave charge channel could lead to a spatially modulated nematic state, where the modulation vector q is determined by the relative location of the Fermi level to the van Hove singularity. Interestingly, this finite-q nematic (nematic stripe) phase has also been identified as an additional leading instability that is as strong as the superconducting instability near the onset of spin density wave order. Here, we study the electrical conductivity tensor in the modulated nematic phase for a general modulation vector. Our results can be used to identify nematic stripe phases in correlated materials. PMID:23603455

  4. Adult neurogenesis in the four-striped mice (Rhabdomys pumilio).

    Science.gov (United States)

    Olaleye, Olatunbosun O; Ihunwo, Amadi O

    2014-11-01

    In this study, we investigated non-captive four-striped mice (Rhabdomys pumilio) for evidence that adult neurogenesis occurs in the adult brain of animal models in natural environment. Ki-67 (a marker for cell proliferation) and doublecortin (a marker for immature neurons) immunostaining confirmed that adult neurogenesis occurs in the active sites of subventricular zone of the lateral ventricle with the migratory stream to the olfactory bulb, and the subgranular zone of the dentate gyrus of the hippocampus. No Ki-67 proliferating cells were observed in the striatum substantia nigra, amygdala, cerebral cortex or dorsal vagal complex. Doublecortin-immunoreactive cells were observed in the striatum, third ventricle, cerebral cortex, amygdala, olfactory bulb and along the rostral migratory stream but absent in the substantia nigra and dorsal vagal complex. The potential neurogenic sites in the four-striped mouse species could invariably lead to increased neural plasticity. PMID:25558241

  5. Stripe order and quasiparticle Nernst effect in cuprate superconductors

    International Nuclear Information System (INIS)

    After a brief review of current ideas on stripe order in cuprate high-temperature superconductors, we discuss the quasiparticle Nernst effect in cuprates, with focus on its evolution in non-superconducting stripe and related nematic states. In general, we find the Nernst signal to be strongly enhanced by nearby van-Hove singularities and Lifshitz transitions in the band structure, implying that phases with translation symmetry breaking often lead to a large quasiparticle Nernst effect due to the presence of multiple small Fermi pockets. Open orbits may contribute to the Nernst signal as well, but in a strongly anisotropic fashion. We discuss our results in the light of recent proposals for a specific Lifshitz transition in underdoped YBa2Cu3Oy and make predictions for the doping dependence of the Nernst signal.

  6. Stripe order and quasiparticle Nernst effect in cuprate superconductors

    Energy Technology Data Exchange (ETDEWEB)

    Hackl, Andreas [Department of Physics, California Institute of Technology, Pasadena, CA 91125 (United States); Vojta, Matthias, E-mail: ahackl@caltech.ed [Institut fuer Theoretische Physik, Technische Universitaet Dresden, 01062 Dresden (Germany)

    2010-10-15

    After a brief review of current ideas on stripe order in cuprate high-temperature superconductors, we discuss the quasiparticle Nernst effect in cuprates, with focus on its evolution in non-superconducting stripe and related nematic states. In general, we find the Nernst signal to be strongly enhanced by nearby van-Hove singularities and Lifshitz transitions in the band structure, implying that phases with translation symmetry breaking often lead to a large quasiparticle Nernst effect due to the presence of multiple small Fermi pockets. Open orbits may contribute to the Nernst signal as well, but in a strongly anisotropic fashion. We discuss our results in the light of recent proposals for a specific Lifshitz transition in underdoped YBa{sub 2}Cu{sub 3}O{sub y} and make predictions for the doping dependence of the Nernst signal.

  7. Comparison of web frameworks Spring MVC, Stripes and Apache Tapestry

    OpenAIRE

    Sakelšak, Dejan

    2014-01-01

    The thesis compares three web application development frameworks for the Java platform: Spring MVC, Stripes and Apache Tapestry. The comparison was based on the implementation of the same application with each of the frameworks, and used graphs of measurements, network traffic images and property tables for the analysis. As part of the thesis, detailed descriptions of the frameworks were reviewed, their features and performances were compared as well as their qualities and deficiencies were h...

  8. Adult neurogenesis in the four-striped mice (Rhabdomys pumilio)

    OpenAIRE

    Olaleye, Olatunbosun O.; Ihunwo, Amadi O.

    2014-01-01

    In this study, we investigated non-captive four-striped mice (Rhabdomys pumilio) for evidence that adult neurogenesis occurs in the adult brain of animal models in natural environment. Ki-67 (a marker for cell proliferation) and doublecortin (a marker for immature neurons) immunostaining confirmed that adult neurogenesis occurs in the active sites of subventricular zone of the lateral ventricle with the migratory stream to the olfactory bulb, and the subgranular zone of the dentate gyrus of t...

  9. Wavy stripes and squares in zero P number convection

    OpenAIRE

    Pal, Pinaki; Kumar, Krishna

    2001-01-01

    A simple model to explain numerically observed behaviour of chaotically varying stripes and square patterns in zero Prandtl number convection in Boussinesq fluid is presented. The nonlinear interaction of mutually perpendicular sets of wavy rolls, via higher mode, may lead to a competition between the two sets of wavy rolls. The appearance of square patterns is due to the secondary forward Hopf bifurcation of a set of wavy rolls.

  10. Gall production on hawthorns caused by Gymnosporangium spp.in Hatay province, Turkey

    Science.gov (United States)

    Three hawthorn and related rust diseases caused by Gymnosporangium confusum on Crataegus monogyna, G. clavariiforme on C. orientalis, and G. sabinae on Pyrus communis were detected in Hatay province, Turkey. Gymnosporangium confusum was also found causing telial galls on Juniperus communis. Gymnospo...

  11. NATURAL TRANSVERSE VIBRATIONS OF A PRESTRESSED ORTHOTROPIC PLATE-STRIPE

    Directory of Open Access Journals (Sweden)

    Egorychev Oleg Aleksandrovich

    2012-10-01

    Full Text Available The article represents a new outlook at the boundary-value problem of natural vibrations of a homogeneous pre-stressed orthotropic plate-stripe. In the paper, the motion equation represents a new approximate hyperbolic equation (rather than a parabolic equation used in the majority of papers covering the same problem describing the vibration of a homogeneous orthotropic plate-stripe. The proposed research is based on newly derived boundary conditions describing the pin-edge, rigid, and elastic (vertical types of fixing, as well as the boundary conditions applicable to the unfixed edge of the plate. The paper contemplates the application of the Laplace transformation and a non-standard representation of a homogeneous differential equation with fixed factors. The article proposes a detailed representation of the problem of natural vibrations of a homogeneous orthotropic plate-stripe if rigidly fixed at opposite sides; besides, the article also provides frequency equations (no conclusions describing the plate characterized by the following boundary conditions: rigid fixing at one side and pin-edge fixing at the opposite side; pin-edge fixing at one side and free (unfixed other side; rigid fixing at one side and elastic fixing at the other side. The results described in the article may be helpful if applied in the construction sector whenever flat structural elements are considered. Moreover, specialists in solid mechanics and theory of elasticity may benefit from the ideas proposed in the article.

  12. Characterization of Five Novel Mitoviruses in the White Pine Blister Rust Fungus Cronartium ribicola

    Science.gov (United States)

    Liu, Jun-Jun; Chan, Danelle; Xiang, Yu; Williams, Holly; Li, Xiao-Rui; Sniezko, Richard A.; Sturrock, Rona N.

    2016-01-01

    The white pine blister rust (WPBR) fungus Cronartium ribicola (J.C. Fisch.) is an exotic invasive forest pathogen causing severe stem canker disease of native white pine trees (subgenus Strobus) in North America. The present study reports discovery of five novel mitoviruses in C. ribicola by deep RNA sequencing. The complete genome of each mitovirus was determined by rapid amplification of cDNA ends (RACE) and reverse transcriptase-polymerase chain reaction (RT-PCR). A single open reading frame (ORF) encoding a putative RNA-dependent RNA polymerase (RdRp) was detected in each of the viral genomes using mitochondrial genetic codes. Phylogenetic analysis indicated that the C. ribicola mitoviruses (CrMV1 to CrMV5) are new putative species of the genus Mitovirus. qRT-PCR and RNA-Seq analyses revealed that viral RNAs were significantly increased in fungal mycelia in cankered pine stems compared to expression during two different stages of spore development, suggesting that viral genome replication and transcription benefit from active growth of the host fungus. CrMVs were widespread with relatively high levels of minor allele frequency (MAF) in western North America. As the first report of mitoviruses in the Class Pucciniomycetes, this work allows further investigation of the dynamics of a viral community in the WPBR pathosystem, including potential impacts that may affect pathogenicity and virulence of the host fungus. PMID:27196406

  13. Evaluation of Local Wheat Cultivars Susceptibility to infection with Black Stem Rust

    International Nuclear Information System (INIS)

    The present study was conducted to assess the susceptibility of seven local wheat cultivars from Palestine to infection with black stem rust caused by Puccinia graminis f. sp. tritici. Two techniques of disease inoculation were applied during bioassays: global inoculation of entire wheat plants with urediospores and localized inoculation with urediospores and localized inoculation with urediospores on wheat leaf-pieces incubated under humid conditions. Susceptibility of tested cultivars was evaluated according to disease scale based on number and size of typical unredial pustules that appeared after inoculation on entire plants or leaf pieces. Results obtained on bioassay of susceptibility and disease rating on entire plants indicated that Anbar, Kamata and Hetiya safra cultivars were the least susceptible to P. g. tritici infection, whereas Debiya beda cultivar was the most susceptible. The other tested cultivars such as Nab-El-Jama, sawda and Senf 870 were moderately susceptible. On leaf-pieces, Anbar and Kamatat were the least susceptible cultivars, whereas Debiya beda and Nab-El-Jamal were the most susceptible cultivars. The other tested cultivars such as Debiya swada, Senf 870 and Hetiya safra were moderately susceptible. Significant reductions were obtained for the size of unredial postules formed on leaf-pieces when inoculated in an unwounded state compared to the wounded indicating the importance of wounds during inoculation. The global results indicated the possibility of using above method of disease inoculating, scaling and rating for evaluation of wheat cultivars susceptibility for the eventual use in breeding program for resistant varieties in Palestine. (author)

  14. Characterization of Five Novel Mitoviruses in the White Pine Blister Rust Fungus Cronartium ribicola.

    Science.gov (United States)

    Liu, Jun-Jun; Chan, Danelle; Xiang, Yu; Williams, Holly; Li, Xiao-Rui; Sniezko, Richard A; Sturrock, Rona N

    2016-01-01

    The white pine blister rust (WPBR) fungus Cronartium ribicola (J.C. Fisch.) is an exotic invasive forest pathogen causing severe stem canker disease of native white pine trees (subgenus Strobus) in North America. The present study reports discovery of five novel mitoviruses in C. ribicola by deep RNA sequencing. The complete genome of each mitovirus was determined by rapid amplification of cDNA ends (RACE) and reverse transcriptase-polymerase chain reaction (RT-PCR). A single open reading frame (ORF) encoding a putative RNA-dependent RNA polymerase (RdRp) was detected in each of the viral genomes using mitochondrial genetic codes. Phylogenetic analysis indicated that the C. ribicola mitoviruses (CrMV1 to CrMV5) are new putative species of the genus Mitovirus. qRT-PCR and RNA-Seq analyses revealed that viral RNAs were significantly increased in fungal mycelia in cankered pine stems compared to expression during two different stages of spore development, suggesting that viral genome replication and transcription benefit from active growth of the host fungus. CrMVs were widespread with relatively high levels of minor allele frequency (MAF) in western North America. As the first report of mitoviruses in the Class Pucciniomycetes, this work allows further investigation of the dynamics of a viral community in the WPBR pathosystem, including potential impacts that may affect pathogenicity and virulence of the host fungus. PMID:27196406

  15. Characterization of a tryptophan 2-monooxygenase gene from Puccinia graminis f. sp. tritici involved in auxin biosynthesis and rust pathogenicity.

    Science.gov (United States)

    Yin, Chuntao; Park, Jeong-Jin; Gang, David R; Hulbert, Scot H

    2014-03-01

    The plant hormone indole-3-acetic acid (IAA) is best known as a regulator of plant growth and development but its production can also affect plant-microbe interactions. Microorganisms, including numerous plant-associated bacteria and several fungi, are also capable of producing IAA. The stem rust fungus Puccinia graminis f. sp. tritici induced wheat plants to accumulate auxin in infected leaf tissue. A gene (Pgt-IaaM) encoding a putative tryptophan 2-monooxygenase, which makes the auxin precursor indole-3-acetamide (IAM), was identified in the P. graminis f. sp. tritici genome and found to be expressed in haustoria cells in infected plant tissue. Transient silencing of the gene in infected wheat plants indicated that it was required for full pathogenicity. Expression of Pgt-IaaM in Arabidopsis caused a typical auxin expression phenotype and promoted susceptibility to the bacterial pathogen Pseudomonas syringae pv. tomato DC3000. PMID:24350783

  16. High-Contrast Color-Stripe Pattern for Rapid Structured-Light Range Imaging

    OpenAIRE

    Je, Changsoo; Lee, Sang Wook; Park, Rae-Hong

    2015-01-01

    For structured-light range imaging, color stripes can be used for increasing the number of distinguishable light patterns compared to binary BW stripes. Therefore, an appropriate use of color patterns can reduce the number of light projections and range imaging is achievable in single video frame or in "one shot". On the other hand, the reliability and range resolution attainable from color stripes is generally lower than those from multiply projected binary BW patterns since color contrast i...

  17. Heat to Electricity Conversion by a Graphene Stripe with Heavy Chiral Fermions

    OpenAIRE

    Shafranjuk, S. E.

    2012-01-01

    A conversion of thermal energy into electricity is considered in the electrically polarized graphene stripes with zigzag edges where the heavy chiral fermion (HCF) states are formed. The stripes are characterized by a high electric conductance Ge and by a significant Seebeck coefficient S. The electric current in the stripes is induced due to a non-equilibrium thermal injection of "hot" electrons. This thermoelectric generation process might be utilized for building of thermoelectric generato...

  18. Evaluation of locally available feed resources for striped catfish (Pangasianodon hypophthalmus)

    OpenAIRE

    Da, Chau Thi

    2012-01-01

    This thesis investigated and compared inputs and outputs, economic factors and current feed use in small-scale farming systems producing striped catfish (Pangasianodon hypophthalmus) in the Mekong Delta. The nutrient content of locally available natural feed resources for striped catfish was determined and growth performance, feed utilisation and body indices were analysed in pond-cultured striped catfish fed diets where fish meal protein was replaced with protein from local feed resources. ...

  19. Disorder, cluster spin glass, and hourglass spectra in striped magnetic insulators.

    Science.gov (United States)

    Andrade, Eric C; Vojta, Matthias

    2012-10-01

    Hourglass-shaped magnetic excitation spectra have been detected in a variety of doped transition-metal oxides with stripelike charge order. Compared to the predictions of spin-wave theory for perfect stripes, these spectra display a different intensity distribution and anomalous broadening. Here we show, based on a comprehensive modeling for La5/3Sr1/3CoO4, how quenched disorder in the charge sector causes frustration, and consequently cluster-glass behavior at low temperatures, in the spin sector. This spin-glass physics, which is insensitive to the detailed nature of the charge disorder, but sensitive to the relative strength of the magnetic interstripe coupling, ultimately determines the distribution of magnetic spectral weight: The excitation spectrum, calculated using spin waves in finite disordered systems, is found to match in detail the observed hour-glass spectrum. PMID:23083273

  20. The effect of environmental hypercapnia and size on nitrite toxicity in the striped catfish (Pangasianodon hypophthalmus)

    DEFF Research Database (Denmark)

    Hvas, Malthe; Damsgaard, Christian; Gam, Le Thi Hong;

    2016-01-01

    Striped catfish (Pangasianodon hypophthalmus) are farmed intensively at high stocking densities in Vietnam where they are likely to encounter environmental hypercapnia as well as occasional high levels of aquatic nitrite. Nitrite competes with Cl- for uptake at the branchial HCO3-/Cl- exchanger...... to a reduced nitrite uptake. To assess the effect of hypercapnia on nitrite uptake, fish were cannulated in the dorsal aorta, allowing repeated blood sampling for measurements of haemoglobin derivatives, plasma ions and acid-base status during exposure to 0.9 mM nitrite alone and in combination with...... acute and 48 h acclimated hypercapnia over a period of 72 h. Nitrite uptake was initially reduced during the hypercapnia-induced acidosis, but after pH recovery the situation was reversed, resulting in higher plasma nitrite concentrations and lower functional haemoglobin levels that eventually caused...

  1. PCR markers for Triticum speltoides leaf rust resistance gene Lr51 and their use to develop isogenic hard red spring wheat lines

    OpenAIRE

    Helguera, M; Vanzetti, L.; Soria, M; Khan, I A; Kolmer, J.; Dubcovsky, Jorge

    2005-01-01

    New leaf rust resistance genes are needed in wheat (Triticum aestivum L.) to provide additional sources of resistance to the highly variable and dynamic leaf rust pathogen Puccinia triticina Eriks. Leaf rust resistance gene Lr51, located within a segment of Triticum speltoides Taush chromosome IS translocated to the long arm of chromosome 1B of bread wheat, is resistant to the current predominant races of leaf rust in the USA. The objectives of this study were to determine the genetic length ...

  2. Zebra Stripes through the Eyes of Their Predators, Zebras, and Humans.

    Directory of Open Access Journals (Sweden)

    Amanda D Melin

    Full Text Available The century-old idea that stripes make zebras cryptic to large carnivores has never been examined systematically. We evaluated this hypothesis by passing digital images of zebras through species-specific spatial and colour filters to simulate their appearance for the visual systems of zebras' primary predators and zebras themselves. We also measured stripe widths and luminance contrast to estimate the maximum distances from which lions, spotted hyaenas, and zebras can resolve stripes. We found that beyond ca. 50 m (daylight and 30 m (twilight zebra stripes are difficult for the estimated visual systems of large carnivores to resolve, but not humans. On moonless nights, stripes are difficult for all species to resolve beyond ca. 9 m. In open treeless habitats where zebras spend most time, zebras are as clearly identified by the lion visual system as are similar-sized ungulates, suggesting that stripes cannot confer crypsis by disrupting the zebra's outline. Stripes confer a minor advantage over solid pelage in masking body shape in woodlands, but the effect is stronger for humans than for predators. Zebras appear to be less able than humans to resolve stripes although they are better than their chief predators. In conclusion, compared to the uniform pelage of other sympatric herbivores it appears highly unlikely that stripes are a form of anti-predator camouflage.

  3. Reorientation of quantum Hall stripes within a partially filled Landau level

    Science.gov (United States)

    Shi, Q.; Zudov, M. A.; Watson, J. D.; Gardner, G. C.; Manfra, M. J.

    2016-03-01

    We investigate the effect of the filling factor on transport anisotropies, known as stripes, in high Landau levels of a two-dimensional electron gas. We find that at certain in-plane magnetic fields, the stripes orientation is sensitive to the filling factor within a given Landau level. This sensitivity gives rise to the emergence of stripes away from half-filling while orthogonally oriented, native stripes reside at half-filling. This switching of the anisotropy axes within a single Landau level can be attributed to a strong dependence of the native symmetry-breaking potential on the filling factor.

  4. Molecular mapping of the rust resistance gene R4 to a large NBS-LRR cluster on linkage group 13 of sunflower

    Science.gov (United States)

    Rust is a serious fungal disease in the sunflower growing areas worldwide with increasing importance in North America in recent years. Several genes conferring resistance to rust have been identified in sunflower, but few of them were genetically mapped. The rust resistance gene R4 in the germplasm ...

  5. Expression of a Thatcher wheat adult plant stem rust resistance QTL on chromosome arm 2BL is enhanced by Lr34

    Science.gov (United States)

    An F6 recombinant inbred line (RIL) spring wheat population derived from RL6071, a stem rust susceptible line and RL6058, a backcross line of Thatcher wheat with Lr34 that is highly resistant to stem rust, was evaluated for adult plant stem rust resistance in North Dakota in 1999, and in Kenya in 20...

  6. Development of a Set of Stem Rust Susceptible D-Genome Disomic Substitutions Based on Rusty durum

    Science.gov (United States)

    Stem rust (Puccinia graminis Pers.:Pers. f.sp. tritici Eriks. and Henn.) is one of the most devastating diseases of wheat (Triticum aestivum L.) and durum (T. turgidum L. ssp. durum). Prior to the development of molecular techniques, studies of genes for stem rust resistance genes in wheat were com...

  7. Concerted action of two avirulent spore effectors activates Reaction to Puccinia graminis 1 (Rpg1)-mediated cereal stem rust resistance

    Science.gov (United States)

    The barley stem rust resistance gene Reaction to Puccinia graminis 1 (Rpg1), encoding a receptor-like kinase, confers durable resistance to the stem rust pathogen Puccinia graminis f. sp. tritici. The fungal urediniospores form adhesion structures with the leaf epidermal cells within 1 h of inocula...

  8. Molecular marker-assisted alien gene introgression of Sr39 for wheat stem rust resistance derived from Aegilops speltoides

    Science.gov (United States)

    In wheat (Triticum aestivum L.), stem rust resistance gene Sr39, derived from Aegilops speltoides, is highly effective against multiple stem rust races including Ug99. However, the gene has not been used in wheat breeding because it is located on a large 2S chromosomal segment in the current transl...

  9. TaMDAR6 acts as a negative regulator of plant cell death and participates indirectly in stomatal regulation during the wheat stripe rust-fungus interaction.

    Science.gov (United States)

    Abou-Attia, Mohamed Awaad; Wang, Xiaojie; Nashaat Al-Attala, Mohamed; Xu, Qiang; Zhan, Gangming; Kang, Zhensheng

    2016-03-01

    We identified a new monodehydroascorbate reductase (MDAR) gene from wheat, designated TaMDAR6, which is differentially affected by wheat-Puccinia striiformis f. sp. tritici (Pst) interactions. TaMDAR6 is a negative regulator of plant cell death (PCD) triggered by the Bax gene and Pst. Transcript levels of TaMDAR6 are significantly upregulated during a compatible wheat-Pst interaction, indicating that TaMDAR6 may contribute to plant susceptibility. In addition, H2 O2 production and PCD are significantly induced and initial pathogen development is significantly reduced in the TaMDAR6 knocked-down plants upon Pst infection. Thus, the suppression of TaMDAR6 enhances wheat resistance to Pst. Besides, the suppression of TaMDAR6 during an incompatible interaction induces a change in the morphology of stomata, which leads to poor stoma recognition and as a consequence to reduced infection efficiency. The percentage of infection sites that develop substomatal vesicles decreases in the TaMDAR6 knocked-down plants during the incompatible interaction presumably due to the increase in ROS accumulation, which is likely to activate other resistance mechanisms that have a negative effect on substomatal vesicle formation. TaMDAR6 can therefore be considered a negative regulator of PCD and of wheat defense to Pst. PMID:26074061

  10. Genetic Analysis of Major and Minor Gene(s) Resistant to Stripe Rust in Important Resource Wheat Line Jinghe891-1

    Institute of Scientific and Technical Information of China (English)

    XU Shi-chang; ZHANG Jing-yuan; ZHAO Wen-sheng; WU Li-ren; ZHANG Ji-xin; YUAN Zhen-dong

    2002-01-01

    Inheritance of line Jinghe891-1 resistant to pathotype of Puccinia striiformis in two patterns of temperature (Normal: day 18℃/night 10℃, High: day 24℃/night 15℃ )was studied in this paper. The results showed that there were at least two pairs of dominant major genes and one pair of recessive minor genes in Jinghe 891-1. The two pairs of major genes that conferred resistance to CY31 were allelic or linked closely with resistance gene in Jubilejna Ⅱ , Kangyin655 and T. spelta Album. They were novel resistance genes and were inherited in a repeated or independent mode. The minor genes, which could modify the major genes,were sensitive to temperature and conferred resistance to all pathotypes of Puccinia striiformis in China. It is recommended that this line can be used as an important resource stock.

  11. Screening of New Resistance Sources of Wheat Leaf Rust%小麦叶锈病新抗源筛选

    Institute of Scientific and Technical Information of China (English)

    刘成; 闫红飞; 宫文萍; 李光蓉; 刘大群; 杨足君

    2013-01-01

    小麦叶锈病是小麦生产的主要病害之一,发病严重时往往导致大幅度减产.叶锈菌生理小种的变异易导致抗病基因抗性的丧失,因此不断获得新抗源对小麦抗病育种至关重要.小麦近缘植物中含有丰富的小麦育种所需的抗病基因.本研究从小麦-近缘植物双二倍体、附加系、代换系或易位系等创新种质中筛选出小麦叶锈病新抗源,为利用这些新抗源打下基础.苗期对116份供试材料人工接种美国堪萨斯州流行的小麦叶锈菌混合生理小种(Lrcomp),其中部分材料人工接种09-9-1441-1等5个中国当前流行的叶锈菌生理小种进行抗性鉴定,筛选获得新抗源.116份种质中,31份免疫、近免疫或高抗Lrcomp.含有希尔斯山羊草、尾状山羊草、拟斯卑尔脱山羊草、两芒山羊草、卵穗山羊草、沙融山羊草、柱穗山羊草、顶芒山羊草、小伞山羊草、偏凸山羊草、中间偃麦草、茸毛偃麦草、长穗偃麦草、粗穗披碱草、栽培黑麦、非洲黑麦、提莫菲维小麦染色质的部分种质免疫或高抗Lrcomp,而含二角山羊草、无芒山羊草、沙生冰草、多年生簇毛麦和1年生簇毛麦染色质的种质表现中感至高感Lrcomp.希尔斯山羊草4S染色体、尾状山羊草C#1和D#1染色体和两芒山羊草、顶芒山羊草中可能含有未被报道的抗Lr-comp的新基因,值得进一步向小麦转育.小麦-粗穗披碱草1HtS.1BL罗伯逊易位系对Lrcomp及09-9-1441-1和09-9-1426-1等5个中国当前流行叶锈菌生理小种近免疫,值得利用染色体工程等方法获得小片段抗病易位系应用于我国小麦抗叶锈育种.%Wheat leaf rust,one of the most major diseases of wheat,greatly reduce wheat yield when wheat cultivars are infected.It is important to continuously screen and obtain new resistance sources for wheat breeding due to the resistance losses caused by mutant of leaf rust races.Wheat-relatives harbor resistance

  12. Primerjava spletnih ogrodij Spring MVC, Stripes in Apache Tapestry

    OpenAIRE

    Sakelšak, Dejan

    2015-01-01

    Diplomsko delo primerja tri ogrodja za razvoj spletnih aplikacij na platformi Java: Spring MVC, Stripes in Apache Tapestry. Primerjava je bila narejena na podlagi izvedbe enake aplikacije z vsakim od ogrodij, in sicer s pomočjo grafov meritev, slik prometa in tabel lastnosti. V okviru analize so bili pregledani podrobnejši opisi posameznih ogrodij, primerjalo se je njihove funkcionalnosti in zmogljivost, ter opozorilo na njihove dobre in slabe lastnosti. Upoštevalo se je tudi težavnost razvoj...

  13. Sagittarius stream 3-d kinematics from SDSS Stripe 82

    OpenAIRE

    Koposov, Sergey E.; Belokurov, Vasily; Evans, N. Wyn

    2013-01-01

    Using multi-epoch observations of the Stripe 82 region done by Sloan Digital Sky Survey, we measure precise statistical proper motions of the stars in the Sagittarius stellar stream. The multi-band photometry and SDSS radial velocities allow us to efficiently select Sgr members and thus enhance the proper motion precision to ~0.1 mas/yr. We measure separately the proper motion of a photometrically selected sample of the main sequence turn-off stars, as well as of a spectroscopically selected ...

  14. Behavior and Body Patterns of the Larger Pacific Striped Octopus.

    Directory of Open Access Journals (Sweden)

    Roy L Caldwell

    Full Text Available Over thirty years ago anecdotal accounts of the undescribed Larger Pacific Striped Octopus suggested behaviors previously unknown for octopuses. Beak-to-beak mating, dens shared by mating pairs, inking during mating and extended spawning were mentioned in publications, and enticed generations of cephalopod biologists. In 2012-2014 we were able to obtain several live specimens of this species, which remains without a formal description. All of the unique behaviors listed above were observed for animals in aquaria and are discussed here. We describe the behavior, body color patterns, and postures of 24 adults maintained in captivity. Chromatophore patterns of hatchlings are also shown.

  15. Change in Occurrence of Rice stripe virus Disease

    OpenAIRE

    Bong Choon Lee; Sang-Yun Cho; Young-Nam Yoon; In Jeong Kang; Jong Hee Lee; Do Yeon Kwak; Dong Bum Shin; Hang-Won Kang

    2012-01-01

    We surveyed the occurrence of Rice stripe virus (RSV) disease in 672 fields from 29 rice representative area inJuly 2012 as nationwide survey for RSV occurrence since 2008. We confirmed occurrence of virus disease in18 areas, in west coast region including Secheon, Taean, Buwan and Cheorwon. RSV incidence rates of plantin Sacheon and Buan were less than 0.01% and 0.15%, respectively, showing similar rate with the nationwidesurvey carried out in 2008, whereas incidence rate of field declined f...

  16. X-ray microbeam bystander studies between stripes of dose

    International Nuclear Information System (INIS)

    Evidence is emerging that radiation exposure can change communication between cells of the same type, as well as between cells of different cell compartments within tissues. We are using a novel X-ray Microprobe Beamline at the Advanced Light Source (ALS) at LBNL to investigate bystander effects of low doses in well-characterized human mammary epithelial cells (HMEC) and human skin fibroblasts (HSF). The ALS facility is capable of producing a beam of 12.5 keV X-rays with a focussed spot size of 2 square micron and a wide range of doses and dose-rates. Unlike normal X-ray sources, this beam has a very small background of either low- or high-energy X-rays. In initial studies, cultures grown in microwell slide chambers have been irradiated with precise stripes of dose up to 100 micron wide. We are using fluorescence microscopy on a high-precision-controlled microscope stage to evaluate several classes of radiation-induced soluble signals, how these signals are communicated across cell compartments, and how radiation changes cell signaling both acutely and chronically. To evaluate the spatial dependence of intercellular communications, we varied the distance between dose stripes from 0-900 micrometers. We are investigating the radiation induction of p21Cip1 (CDKN1a), and phosphorylation of H2AX and p53 serine-15 as endpoints. Our preliminary results indicate that there is a dose- and cell-type-dependent expression of p53 serine-15P within 10 minutes after exposure to a 100 micron wide stripe of dose. Immunohistochemistry of p53-serine-15P-positive cells traversed by the beam illuminates the path of the X-ray microbeam, with epithelial cells responding more rapidly and with greater intensity than fibroblasts. The intensity of the immunofluorescence scales with the dose. The number of p53-serine-15P-positive cells in the unirradiated cell populations between the stripes has been counted as a measure of the bystander effect, and compared to appropriate controls. We will

  17. Response to "Critical Assessment of the Evidence for Striped Nanoparticles".

    Directory of Open Access Journals (Sweden)

    Quy Khac Ong

    Full Text Available Stirling et al., (10.1371/journal.pone.0108482 presented an analysis on some of our publications on the formation of stripe-like domains on mixed-ligand coated gold nanoparticles. The authors shed doubts on some of our results however no valid argument is provided against what we have shown since our first publication: scanning tunneling microscopy (STM images of striped nanoparticles show stripe-like domains that are independent of imaging parameters and in particular of imaging speed. We have consistently ruled out the presence of artifacts by comparing sets of images acquired at different tip speeds, finding invariance of the stipe-like domains. Stirling and co-workers incorrectly analyzed this key control, using a different microscope and imaging conditions that do not compare to ours. We show here data proving that our approach is rigorous. Furthermore, we never solely relied on image analysis to draw our conclusions; we have always used the chemical nature of the particles to assess the veracity of our images. Stirling et al. do not provide any justification for the spacing of the features that we find on nanoparticles: ~1 nm for mixed ligand particles and ~ 0.5 nm for homoligand particles. Hence our two central arguments remain unmodified: independence from imaging parameters and dependence on ligand shell chemical composition. The paper report observations on our STM images; none is a sufficient condition to prove that our images are artifacts. We thoroughly addressed issues related to STM artifacts throughout our microscopy work. Stirling et al. provide guidelines for what they consider good STM images of nanoparticles, such images are indeed present in our literature. They conclude that the evidences we provided to date are insufficient, this is a departure from one of the authors' previous article which concluded that our images were composed of artifacts. Given that four independent laboratories have reproduced our measurements and

  18. Photoemission signatures of valence-bond stripes in cuprates: Long-range vs. short-range order

    International Nuclear Information System (INIS)

    Recent experiments indicate that the tendency toward the formation of unidirectional charge density waves ('stripes') is common to various underdoped cuprates. We discuss momentum-resolved spectral properties of valence-bond stripes, comparing the situations of ideal and short-range stripe order, the latter being relevant for weak and/or disorder-pinned stripes. We find clear signatures of ordered stripes, although matrix element effects suppress most shadow band features. With decreasing stripe correlation length, stripe signatures are quickly washed out, the only remaining effect being a broadening of antinodal quasiparticles. This insensitivity of photoemission to short-range stripe order may be employed to distinguish it from nematic order, e.g. in underdoped YBa2Cu3O6+δ.

  19. Photoemission signatures of valence-bond stripes in cuprates: Long-range vs. short-range order

    Energy Technology Data Exchange (ETDEWEB)

    Wollny, Alexander [Institut fuer Theoretische Physik, Universitaet zu Koeln, Zuelpicher Strasse 77, 50937 Koeln (Germany); Vojta, Matthias, E-mail: vojta@thp.uni-koeln.d [Institut fuer Theoretische Physik, Universitaet zu Koeln, Zuelpicher Strasse 77, 50937 Koeln (Germany)

    2009-10-15

    Recent experiments indicate that the tendency toward the formation of unidirectional charge density waves ('stripes') is common to various underdoped cuprates. We discuss momentum-resolved spectral properties of valence-bond stripes, comparing the situations of ideal and short-range stripe order, the latter being relevant for weak and/or disorder-pinned stripes. We find clear signatures of ordered stripes, although matrix element effects suppress most shadow band features. With decreasing stripe correlation length, stripe signatures are quickly washed out, the only remaining effect being a broadening of antinodal quasiparticles. This insensitivity of photoemission to short-range stripe order may be employed to distinguish it from nematic order, e.g. in underdoped YBa{sub 2}Cu{sub 3}O{sub 6+d}elta.

  20. Reflexion M\\"ossbauer analysis of the in situ oxidation products hydroxycarbonate green rust

    CERN Document Server

    Naille, Sebastien; Louber, Didier; Jean, Paul Moulin; Ruby, Christian; 10.1088/1742-6596/217/1/012084

    2010-01-01

    The purpose of this study is to determine the nature of the oxidation products of FeII-III hydroxycarbonate FeII4FeIII2(OH)12CO3~3H2O (green rust GR(CO32-)) by using the miniaturised M\\"ossbauer spectrometer MIMOS II. Two M\\"ossbauer measurements methods are used: method (i) with green rust pastes coated with glycerol and spread into Plexiglas sample holders, and method (ii) with green rust pastes in the same sample holders but introduced into a gas-tight cell with a beryllium window under a continuous nitrogen flow. Method (ii) allows us to follow the continuous deprotonation of GR(CO32-) into the fully ferric deprotonated form FeIII6O4(OH)8CO3~3H2O by adding the correct amount of H2O2, without any further oxidation or degradation of the samples.

  1. Is the striped mealybug, Ferrisia virgata, a vector of huanglongbing bacterium ‘Candidatus Liberibacter asiaticus’

    Science.gov (United States)

    This is the first report of ‘Ca. L. asiaticus’ (Las) present in striped mealybugs feeding on Las-infected periwinkle plants. In November 2010, specimens of a common greenhouse pest, the striped mealybug Ferrisia virgata (Cockerell) (Pseudococcidae; Hemiptera), were collected from Las-infected periw...

  2. Osmoregulatory effects of hypophysectomy and homologous prolactin replacement in hybrid striped bass

    DEFF Research Database (Denmark)

    Jackson, Leslie F; McCormick, Stephen D; Madsen, Steffen S;

    2005-01-01

    The effects of ovine prolactin (oPRL) and striped bass prolactin (sbPRL; Morone saxatilis) on plasma osmolality, electrolyte balance, and gill Na+,K+-ATPase activity were investigated in hypophysectomized (Hx), freshwater (FW)-acclimated, hybrid striped bass (M. saxatilis x Morone chrysops). They...

  3. Checkerboard local density of states in striped domains pinned by vortices

    DEFF Research Database (Denmark)

    Andersen, B.M.; Hedegård, P.; Bruus, Henrik

    2003-01-01

    We discuss recent elastic neutron scattering and scanning tunneling experiments on high-T-c cuprates exposed to an applied magnetic field. Antiferromagnetic vortex cores operating as pinning centers for surrounding stripes is qualitatively consistent with the neutron data provided the stripes have...

  4. Pressure-induced phase transition to a novel spin state in striped nickelates

    OpenAIRE

    Kaneshita, E.; Bishop, A. R.

    2008-01-01

    We analyze pressure effects on stripe states within a selfconsistent Hartree-Fock calculation for a model of a striped nickelates. The results show a transition induced by high pressure and predict possible new spin states. We describe characteristics in the phonon excitations at the predicted transition, based on a real-space random phase approximation.

  5. First report of rust caused by Puccinia carduorum on Italian thistle in Tunisia

    Science.gov (United States)

    Italian thistle (Carduus pycnocephalus L.), family Asteraceae, is a common weed in rangelands, pasturelands, and cereal crops in Tunisia where it is rapidly spreading and becoming agriculturally important due to its competitive ability. It is also a problematic invasive weed in the western United S...

  6. Periodically striped films produced from super-aligned carbon nanotube arrays

    International Nuclear Information System (INIS)

    We report a novel way to draw films from super-aligned carbon nanotube arrays at large drawing angles. The obtained super-aligned carbon nanotube films have a periodically striped configuration with alternating thinner and thicker film sections, and the width of the stripes is equal to the height of the original arrays. Compared with ordinary uniform films, the striped films provide a better platform for understanding the mechanism of spinning films from arrays because carbon nanotube junctions are easily observed and identified at the boundary of the stripes. Further studies show that the carbon nanotube junctions are bottleneck positions for thermal conduction and mechanical strength of the film, but do not limit its electrical conduction. These films can be utilized as striped and high-degree polarized light emission sources. Our results will be valuable for new applications and future large-scale production of tunable super-aligned carbon nanotube films.

  7. In-plane rotation of magnetic stripe domains in Fe1 -xGax thin films

    Science.gov (United States)

    Fin, S.; Tomasello, R.; Bisero, D.; Marangolo, M.; Sacchi, M.; Popescu, H.; Eddrief, M.; Hepburn, C.; Finocchio, G.; Carpentieri, M.; Rettori, A.; Pini, M. G.; Tacchi, S.

    2015-12-01

    The in-plane rotation of magnetic stripe domains in a 65-nm magnetostrictive Fe0.8Ga0.2 epitaxial film was investigated combining magnetic force microscopy, vibration sample magnetometry, and x-ray resonant magnetic scattering measurements. We analyzed the behavior of the stripe pattern under the application of a bias magnetic field along the in-plane direction perpendicular to the stripe axis, and made a comparison with the analogous behavior at remanence. The experimental results have been explained by means of micromagnetic simulations, supported by energy balance considerations. Fields smaller than ˜400 Oe do not induce any stripe rotation; rather, a deformation of the closure domains pattern was evidenced. Larger fields produce a sudden rotation of the stripe structure.

  8. Rotationally driven 'zebra stripes' in Earth's inner radiation belt.

    Science.gov (United States)

    Ukhorskiy, A Y; Sitnov, M I; Mitchell, D G; Takahashi, K; Lanzerotti, L J; Mauk, B H

    2014-03-20

    Structured features on top of nominally smooth distributions of radiation-belt particles at Earth have been previously associated with particle acceleration and transport mechanisms powered exclusively by enhanced solar-wind activity. Although planetary rotation is considered to be important for particle acceleration at Jupiter and Saturn, the electric field produced in the inner magnetosphere by Earth's rotation can change the velocity of trapped particles by only about 1-2 kilometres per second, so rotation has been thought inconsequential for radiation-belt electrons with velocities of about 100,000 kilometres per second. Here we report that the distributions of energetic electrons across the entire spatial extent of Earth's inner radiation belt are organized in regular, highly structured and unexpected 'zebra stripes', even when the solar-wind activity is low. Modelling reveals that the patterns are produced by Earth's rotation. Radiation-belt electrons are trapped in Earth's dipole-like magnetic field, where they undergo slow longitudinal drift motion around the planet because of the gradient and curvature of the magnetic field. Earth's rotation induces global diurnal variations of magnetic and electric fields that resonantly interact with electrons whose drift period is close to 24 hours, modifying electron fluxes over a broad energy range into regular patterns composed of multiple stripes extending over the entire span of the inner radiation belt. PMID:24646996

  9. Highly resolved intravital striped-illumination microscopy of germinal centers.

    Science.gov (United States)

    Cseresnyes, Zoltan; Oehme, Laura; Andresen, Volker; Sporbert, Anje; Hauser, Anja E; Niesner, Raluca

    2014-01-01

    Monitoring cellular communication by intravital deep-tissue multi-photon microscopy is the key for understanding the fate of immune cells within thick tissue samples and organs in health and disease. By controlling the scanning pattern in multi-photon microscopy and applying appropriate numerical algorithms, we developed a striped-illumination approach, which enabled us to achieve 3-fold better axial resolution and improved signal-to-noise ratio, i.e. contrast, in more than 100 µm tissue depth within highly scattering tissue of lymphoid organs as compared to standard multi-photon microscopy. The acquisition speed as well as photobleaching and photodamage effects were similar to standard photo-multiplier-based technique, whereas the imaging depth was slightly lower due to the use of field detectors. By using the striped-illumination approach, we are able to observe the dynamics of immune complex deposits on secondary follicular dendritic cells - on the level of a few protein molecules in germinal centers. PMID:24748007

  10. Systemic sarcocystosis in a striped skunk (Mephitis mephitis).

    Science.gov (United States)

    Burcham, G N; Ramos-Vara, J A; Vemulapalli, R

    2010-05-01

    A striped skunk with neurological signs was euthanized and examined via necropsy. Histologically, protozoa were found in multiple tissues. Protozoal schizonts measured 15 to 25 mum in diameter and contained 4 to 6 mum crescent-shaped merozoites. Protozoa were associated with necrosis and inflammation in the lung, brain, liver, and nasal epithelium. Immunohistochemistry labeled protozoa strongly positive for Sarcocystis neurona. Polymerase chain reaction-amplified products from the protozoan were 99.6% identical to the corresponding portion of the nuclear small subunit ribosomal RNA gene of S neurona. S neurona origin was further confirmed by amplifying a 451-base pair DNA fragment from the skunk lung, which differed by just 2 or 3 base pairs from the small subunit ribosomal RNA gene of S neurona. Striped skunks act as intermediate and aberrant hosts for S neurona; however, S neurona has rarely been found in extraneural tissues in any species, and systemic sarcocystosis has not been reported in skunks. Additionally, canine distemper virus infection was confirmed with histopathology and immunohistochemistry. Concurrent canine distemper suggests that immunosuppression may have played a role in S neurona infection in this skunk. PMID:20375428

  11. LONGITUDINALLY STRIPED FABRIC DESIGN WITH A MODIFIED WEIGHT

    Directory of Open Access Journals (Sweden)

    OANA Dorina

    2014-05-01

    Full Text Available There are cases when the mass of woven fabrics requiring amendment intervening in the internal structure of the fabric, the reason most often for economic reasons, but also for the diversification by look. The internal structure of striped fabric obtained by combining groups wire ties, densities and / or different fineness creates a specific case on change of fabric weight. Each stripe is a woven fabric whose features differ, in some cases significantly to the bars side by side. This is the reason why the change of mass of such a woven fabrics, it is not so simple as in the case of fabric with a uniform structure. Changing the whole of the fabric weight can be done by changing the mass of each partial woven fabrics.The proposed method for mass modification consists in identifying and determining the partial structural fabric components and their mass change. To change the mass densities chosen method which involves designing a woven fabrics with weft yarn density, so the fabric assembly reference model resulted in a new woven fabric with a mass change After studying the structural features of these fabrics, and methods used to design woven fabrics with weight change , it has been found that there are other ways to solve this problem they known by has can achieve the same results but the simplest way.

  12. Effect of salinity on expression of branchial ion transporters in striped bass (Morone saxatilis)

    DEFF Research Database (Denmark)

    Tipsmark, Christian Kølbaek; Madsen, Steffen Søndergaard; Borski, Russell John

    2004-01-01

    proteins in striped bass when compared with the less euryhaline brown trout. In both FW and SW, NEM-sensitive gill H+-ATPase activity was negligible in striped bass and approximately 10-fold higher in brown trout. This suggests that in striped bass Na+-uptake in FW may rely more on a relatively high...

  13. Control of Fe(O,OH)6 nano-network structures of rust for high atmospheric-corrosion resistance

    International Nuclear Information System (INIS)

    A new-type of weathering steel containing 3.0 mass% Ni and 0.4 mass% Cu ('advanced weathering steel') exhibits good atmospheric-corrosion resistance in an atmosphere containing relatively high air-born salinity. Here, we show that the high performance was successfully achieved by controlling Fe(O,OH)6 nano-network structures of rust formed on their surfaces. A novel technique using synchrotron radiation has been developed for the in situ observation of rust-formation during wet-dry cycles. It has been revealed that the evolution of Fe(O,OH)6 nano-network structures of rust formed on the advanced weathering steel was more unique than those of conventional weathering steel and mild steel. At an early stage of reaction, Fe2NiO4 and CuO phases precipitate, which provide sites for the nucleation of the Fe(O,OH)6 nano-network resulting in the formation of rust composed of fine and dense-packed grains. The existence of Fe2NiO4 in the nano-network changes the ion-exchanging properties of rust from anion to cation selective. Then, the rust on the advanced weathering steel 'breathes out' chloride ions from the rust/steel interface, and protects steel for more than a century by reducing the life cycle maintenance cost in an environment-friendly manner

  14. Genome-wide association study for crown rust (Puccinia coronata f. sp. avenae) and powdery mildew (Blumeria graminis f. sp. avenae) resistance in an oat (Avena sativa) collection of commercial varieties and landraces.

    Science.gov (United States)

    Montilla-Bascón, Gracia; Rispail, Nicolas; Sánchez-Martín, Javier; Rubiales, Diego; Mur, Luis A J; Langdon, Tim; Howarth, Catherine J; Prats, Elena

    2015-01-01

    Diseases caused by crown rust (Puccinia coronata f. sp. avenae) and powdery mildew (Blumeria graminis f. sp. avenae) are among the most important constraints for the oat crop. Breeding for resistance is one of the most effective, economical, and environmentally friendly means to control these diseases. The purpose of this work was to identify elite alleles for rust and powdery mildew resistance in oat by association mapping to aid selection of resistant plants. To this aim, 177 oat accessions including white and red oat cultivars and landraces were evaluated for disease resistance and further genotyped with 31 simple sequence repeat and 15,000 Diversity Arrays Technology (DArT) markers to reveal association with disease resistance traits. After data curation, 1712 polymorphic markers were considered for association analysis. Principal component analysis and a Bayesian clustering approach were applied to infer population structure. Five different general and mixed linear models accounting for population structure and/or kinship corrections and two different statistical tests were carried out to reduce false positive. Five markers, two of them highly significant in all models tested were associated with rust resistance. No strong association between any marker and powdery mildew resistance at the seedling stage was identified. However, one DArT sequence, oPt-5014, was strongly associated with powdery mildew resistance in adult plants. Overall, the markers showing the strongest association in this study provide ideal candidates for further studies and future inclusion in strategies of marker-assisted selection. PMID:25798140

  15. Testing the thermal-niche oxygen-squeeze hypothesis for estuarine striped bass

    Science.gov (United States)

    Kraus, Richard T.; Secor, D.H.; Wingate, Rebecca L.

    2015-01-01

    In many stratified coastal ecosystems, conceptual and bioenergetics models predict seasonal reduction in quality and quantity of fish habitat due to high temperatures and hypoxia. We tested these predictions using acoustic telemetry of 2 to 4 kg striped bass (Morone saxatilis Walbaum) and high-resolution spatial water quality sampling in the Patuxent River, a sub-estuary of the Chesapeake Bay, during 2008 and 2009. Striped bass avoided hypoxic (dissolved oxygen ≤2 mg·l−1) subpycnocline waters, but frequently occupied habitats with high temperatures (>25 °C) in the summer months, as cooler habitats were typically not available. Using traditional concepts of the seasonal thermal-niche oxygen-squeeze, most of the Patuxent estuary would beconsidered unsuitable habitat for adult striped bass during summer. Application of a bioenergetics model revealed that habitats selected by striped bass during summer would support positive growth rates assuming fish could feed at one-half ofmaximum consumption. Occupancy of the estuary during summer by striped bass in this study was likely facilitated by sufficient prey and innate tolerance of high temperatures by sub-adult fish of the size range that we tagged. Our results help extend the thermalniche oxygen-squeeze hypothesis to native populations of striped bass in semi-enclosed coastal systems. Tolerance of for supraoptimal temperatures in our study supports recent suggestions by others that the thermal-niche concept for striped bass should be revised to include warmer temperatures.

  16. Direct proof of static charge stripe correlations in La2-xBaxCuO4

    Science.gov (United States)

    Chen, X. M.; Thampy, V.; Mazzoli, C.; Barbour, A.; Gu, G.; Hill, J. P.; Tranquada, J. M.; Dean, M. P. M.; Wilkins, S. B.

    The nature of charge stripe order in the cuprates, and in particular whether the stripes are static or dynamic, is a key issue in understanding the relationship between stripes and superconductivity. In La2-xBaxCuO4 (LBCO) a low temperature structural distortion is widely believed to pin stripes into fixed, static domains, but such an assertion has never been directly verified. We performed resonant soft x-ray photon correlation spectroscopy (XPCS) to probe the charge order Bragg peak of 1/8 doped LBCO. At low temperatures, we observe time-independent x-ray speckle patterns persisting for more than three hours, proving the static nature of the stripes and we go on to discuss how stripe order melts with increasing temperature. Our results demonstrate that the combination of XPCS with diffraction limited light sources such as the National Synchrotron Light Source II can probe the dynamics of even subtle order parameters such as stripes in the cuprates. Work performed at Brookhaven National Laboratory was supported by the US Department of Energy, Division of Materials Science, under Contract No. DE-AC02-98CH10886. Use of the National Synchrotron Light Source II was supported under Contract No. DE-SC0012704.

  17. Quantitative Trait Loci for Resistance to Stripe Disease in Rice (Oryza sativa)

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    In order to map the quantitative trait loci for rice stripe resistance, a molecular linkage map was constructed based on the lines to rice stripe were investigated by both artificial inoculation at laboratory and natural infection in the field, and the ratios of ranged from 0 to 134.08 and from 6.25 to 133.6 under artificial inoculation at laboratory and natural infection in the field, respectively,and showed a marked bias towards resistant parent (Zhaiyeqing 8), indicating that the resistance to rice stripe was controlled by quantitative trait loci (QTL). QTL analysis showed that the QTLs detected by the two inoculation methods were completely different.Only one QTL, qSTV7, was detected under artificial inoculation, at which the Zhaiyeqing 8 allele increased the resistance to rice stripe, while two QTLs, qSTV5 and qSTV1, were detected under natural infection, in which resistant alleles came from Zhaiyeqing 8and Wuyujing 3, respectively. These results showed that resistant parent Zhaiyeqing 8 carried the alleles associated with the resistance to rice stripe virus and the small brown planthopper, and susceptible parent Wuyujing 3 also carried the resistant allele to rice stripe virus. In comparison with the results previously reported, QTLs detected in the study were new resistant genes to rice stripe disease. This will provide a new resistant resource for avoiding genetic vulnerability for single utilization of the resistant gene Stvb-i.

  18. Analysis of the Lr34/Yr18 rust resistance region in wheat germplasm

    Science.gov (United States)

    An insertion/deletion size variant located at the csLV34 locus on chromosome 7D within an intron sequence of a sulphate transporter-like gene tightly linked to the Lr34/Yr18 dual rust resistance was used to examine a global collection of wheat cultivars, landraces and D genome containing diploid and...

  19. Changes in the population structure of stem rust agent (PUCCINIA GRAMINIS) under low dose chronic radiation

    International Nuclear Information System (INIS)

    The data concerning the changes in population structure of Puccinia graminis, a causal agent of stem rust under low dose chronic radiation are present. The structure has been changed in 10-km ChNPP zone by appearance of a new population with high frequency of more virulent clones as compared to other regions of Ukraine

  20. Sequencing Ug99 and Other Stem Rust Races: Progress and Results

    Science.gov (United States)

    Over the last decade a number of different molecular methods have been used to characterize genetic diversity in Puccinia graminis. Multilocus DNA fingerprinting methods (AFLPs, RAPDs, SAMs and S-SAPs) have proven to be useful, but limited to phenotypic analysis due to the dikaryotic nature of rust ...

  1. Association analysis identifies Melampsora ×columbiana poplar leaf rust resistance SNPs.

    Directory of Open Access Journals (Sweden)

    Jonathan La Mantia

    Full Text Available Populus species are currently being domesticated through intensive time- and resource-dependent programs for utilization in phytoremediation, wood and paper products, and conversion to biofuels. Poplar leaf rust disease can greatly reduce wood volume. Genetic resistance is effective in reducing economic losses but major resistance loci have been race-specific and can be readily defeated by the pathogen. Developing durable disease resistance requires the identification of non-race-specific loci. In the presented study, area under the disease progress curve was calculated from natural infection of Melampsora ×columbiana in three consecutive years. Association analysis was performed using 412 P. trichocarpa clones genotyped with 29,355 SNPs covering 3,543 genes. We found 40 SNPs within 26 unique genes significantly associated (permutated P<0.05 with poplar rust severity. Moreover, two SNPs were repeated in all three years suggesting non-race-specificity and three additional SNPs were differentially expressed in other poplar rust interactions. These five SNPs were found in genes that have orthologs in Arabidopsis with functionality in pathogen induced transcriptome reprogramming, Ca²⁺/calmodulin and salicylic acid signaling, and tolerance to reactive oxygen species. The additive effect of non-R gene functional variants may constitute high levels of durable poplar leaf rust resistance. Therefore, these findings are of significance for speeding the genetic improvement of this long-lived, economically important organism.

  2. Chromosome engineering to enhance utility of alien-derived stem rust resistance

    Science.gov (United States)

    In the past 50 years, a number of stem rust (Sr) resistance genes identified from wild relatives of wheat have been incorporated into wheat genomes through chromosome engineering. Some of these genes, including Sr25, Sr26, Sr32, Sr37, Sr39, Sr40, Sr43, Sr44, SrR, and three unnamed novel Sr genes fr...

  3. Phylogeny and taxonomy of grass rusts with aecia on Ranunculus and Ficaria

    Czech Academy of Sciences Publication Activity Database

    Hrabětová, M.; Kolařík, Miroslav; Marková, J.

    2015-01-01

    Roč. 14, č. 3 (2015). ISSN 1617-416X R&D Projects: GA MŠk(CZ) ED1.1.00/02.0109 Institutional support: RVO:61388971 Keywords : Rust fungi * Pucciniales * Puccinia Subject RIV: EE - Microbiology, Virology Impact factor: 1.913, year: 2014

  4. Confocal microscopy of Spitzenkörper dynamics during growth and differentiation of rust fungi

    NARCIS (Netherlands)

    Dijksterhuis, J

    2003-01-01

    The membrane-selective fluorescent dye FM4-64, N-(3-triethylammoniumpropyl)-4-(6-(4-(diethylamino)phenyl)hexatrienyl)py ridium dibromide, was used to stain the apical vesicle cluster within the specialized Spitzenkorper of the germ tube of the rust fungi Uromyces vignae and Puccinia graminis f. sp.

  5. Confocal microscopy of Spitzenkorper dynamics during growth and differentiation of rust fungi

    NARCIS (Netherlands)

    Dijksterhuis, J

    2003-01-01

    The membrane-selective fluorescent dye FM4-64, N-(3-triethylammoniumpropyl)-4-(6-(4-(diethylamino)phenyl)hexatrienyl)py ridium dibromide, was used to stain the apical vesicle cluster within the specialized Spitzenkorper of the germ tube of the rust fungi Uromyces vignae and Puccinia graminis f. sp.

  6. Reaction to rust by a subset of sorghum accessions from Zimbabwe

    Science.gov (United States)

    Sorghum rust (Puccinia purpurea) is a foliar disease that affects sorghum productivity worldwide. The use of resistant sources is the most effective and stable way to control the disease. In this study, 68 sorghum accessions from the Zimbabwe collection maintained by the USDA-ARS, Plant Genetic Re...

  7. Virulence of wheat yellow rust races and resistance genes of wheat cultivars in Ecuador

    NARCIS (Netherlands)

    Ochoa, J.B.; Danial, D.L.; Paucar, B.

    2007-01-01

    Virulence factors of the yellow rust, Puccinia striiformis, populations in bread wheat were studied in Ecuador between 1973 and 2004. The number of virulence factors has increased markedly from very few in the early seventies to 16 at the end of the 90s. Isolates belonging to race 0E0 seem to be the

  8. The formation of green rust induced by tropical river biofilm components

    International Nuclear Information System (INIS)

    In the Sinnamary Estuary (French Guiana), a dense red biofilm grows on flooded surfaces. In order to characterize the iron oxides in this biofilm and to establish the nature of secondary minerals formed after anaerobic incubation, we conducted solid analysis and performed batch incubations. Elemental analysis indicated a major amount of iron as inorganic compartment along with organic matter. Solid analysis showed the presence of two ferric oxides ferrihydrite and lepidocrocite. Bacteria were abundant and represented more than 1011 cells g-1 of dry weight among which iron reducers were revealed. Optical and electronic microscopy analysis revealed than the bacteria were in close vicinity of the iron oxides. After anaerobic incubations with exogenous electron donors, the biofilm's ferric material was reduced into green rust, a FeII-FeIII layered double hydroxide. This green rust remained stable for several years. From this study and previous reports, we suggest that ferruginous biofilms should be considered as a favorable location for GR biomineralization when redox conditions and electron donors availability are gathered. - Research highlights: → Characterization of ferruginous biofilm components by solid analysis methods. → Lepidocrocite and ferrihydrite were the main iron oxides. → Anaerobic incubation of biofilm with electron donors produced green rust. → Biofilm components promote the formation of the green rust. → Ferruginous biofilm could contribute to the natural mercury attenuation.

  9. Economic analysis of the proposed rule to prevent arrival of new genetic strains of the rust fungus Puccinia psidii in Hawai?i.

    Science.gov (United States)

    Burnett, Kimberly; D'Evelyn, Sean; Loope, Lloyd; Wada, Christopher A.

    2012-01-01

    Since its first documented introduction to Hawai‘i in 2005, the rust fungus P. psidii has already severely damaged Syzygium jambos (Indian rose apple) trees and the federally endangered Eugenia koolauensis (nioi). Fortunately, the particular strain has yet to cause serious damage to ‘ōhi‘a, which comprises roughly 80% of the state’s native forests and covers 400,000 ha. Although the rust has affected less than 5% of Hawaii’s ‘ōhi‘a trees thus far, the introduction of more virulent strains and the genetic evolution of the current strain are still possible. Since the primary pathway of introduction is Myrtaceae plant material imported from outside the state, potential damage to ‘ohi‘a can be minimized by regulating those high-risk imports. We discuss the economic impact on the state’s florist, nursery, landscaping, and forest plantation industries of a proposed rule that would ban the import of non-seed Myrtaceae plant material and require a one-year quarantine of seeds. Our analysis suggests that the benefits to the forest plantation industry of a complete ban on non-seed material would likely outweigh the costs to other affected sectors, even without considering the reduction in risk to ‘ōhi‘a. Incorporating the value of ‘ōhi‘a protection would further increase the benefit-cost ratio in favor of an import ban.

  10. Bipartite Ramsey numbers involving stars, stripes and trees

    Directory of Open Access Journals (Sweden)

    Michalis Christou

    2013-11-01

    Full Text Available The Ramsey number R(m, n is the smallest integer p such that any blue-red colouring of the edges of the complete graph Kp forces the appearance of a blue Km or a red Kn. Bipartite Ramsey problems deal with the same questions but the graph explored is the complete bipartite graph instead of the complete graph. We consider special cases of the bipartite Ramsey problem. More specifically we investigate the appearance of simpler monochromatic graphs such as stripes, stars and trees under a 2-colouring of the edges of a bipartite graph. We give the Ramsey numbers Rb(mP2, nP2, Rb(Tm, Tn, Rb(Sm, nP2, Rb(Tm, nP2 and Rb(Sm, Tn.

  11. The Stripe 82 Massive Galaxy Project I: Catalog Construction

    CERN Document Server

    Bundy, Kevin; Saito, Shun; Bolton, Adam; Lin, Yen-Ting; Marason, Claudia; Nichol, Robert C; Schneider, Donald P; Thomas, Daniel; Wake, David A

    2015-01-01

    The Stripe 82 Massive Galaxy Catalog (S82-MGC) is the largest-volume stellar mass-limited sample of galaxies beyond z~1 constructed to date. Spanning 139.4 deg2, the S82-MGC includes a mass-limited sample of 41,770 galaxies with log Mstar > 11.2 to z~0.7, sampling a volume of 0.3 Gpc3, roughly equivalent to the volume of the Sloan Digital Sky Survey-I/II (SDSS-I/II) z 11.2 sample, and geometric masking. We provide near-IR based stellar mass estimates and compare these to previous estimates. All catalog products are made publicly available. The S82-MGC not only addresses previous statistical limitations in high-mass galaxy evolution studies but begins tackling inherent data challenges in the coming era of wide-field imaging surveys.

  12. Structure-guided unidirectional variation de-striping in the infrared bands of MODIS and hyperspectral images

    Science.gov (United States)

    Zhang, Yaozong; Zhang, Tianxu

    2016-07-01

    Images taken using moderate resolution imaging spectroradiometer (MODIS) and hyperspectral imaging systems, especially in their infrared bands, usually lead to undesired stripe noises, which seriously affect the image quality. A variational de-striping model has been proven to have good performance, but knowing how to detect stripes effectively, especially to distinguish them from edges/textures, is still challenging. In this paper, a structure-guided unidirectional variational (SGUV) model that considers the structure of stripes is proposed. Because of the use of structure information, which textures and edges do not have, the proposed algorithm can effectively distinguish stripes from image textures and almost does not blur details while removing stripes. Comparative experiments based on real stripe images demonstrated that the proposed method provides optimal qualitative and quantitative results.

  13. a Novel Removal Method for Dense Stripes in Remote Sensing Images

    Science.gov (United States)

    Liu, Xinxin; Shen, Huanfeng; Yuan, Qiangqiang; Zhang, Liangpei; Cheng, Qing

    2016-06-01

    In remote sensing images, the common existing stripe noise always severely affects the imaging quality and limits the related subsequent application, especially when it is with high density. To well process the dense striped data and ensure a reliable solution, we construct a statistical property based constraint in our proposed model and use it to control the whole destriping process. The alternating direction method of multipliers (ADMM) is applied in this work to solve and accelerate the model optimization. Experimental results on real data with different kinds of dense stripe noise demonstrate the effectiveness of the proposed method in terms of both qualitative and quantitative perspectives.

  14. Photovoltaic effect of light carrying orbital angular momentum on a semiconducting stripe

    CERN Document Server

    Waetzel, J; Berakdar, J

    2013-01-01

    We investigate the influence of a light beam carrying an orbital angular momentum on the current density of an electron wave packet in a semiconductor stripe. It is shown that due to the photo-induced torque the electron density can be deflected to one of the stripe sides. The direction of the deflection is controlled by the direction of the light orbital momentum. In addition the net current density can be enhanced. This is a photovoltaic effect that can be registered by measuring the generated voltage drop across the stripe and/or the current increase.

  15. Striped Bass Spawning in Non-Estuarine Portions of the Savannah River

    International Nuclear Information System (INIS)

    Historically, the estuarine portions of the Savannah River have been considered to be the only portion of the river in which significant amounts of striped bass (Morone saxatilis) spawning normally occur. A reexamination of data from 1983 through 1985 shows a region between River Kilometers 144 and 253 where significant numbers of striped bass eggs and larvae occur with estimated total egg production near that currently produced in the estuarine reaches. It appears possible that there are two separate spawning populations of striped bass in the Savannah River.

  16. Striped Bass Spawning in Non-Estuarine Portions of the Savannah River

    Energy Technology Data Exchange (ETDEWEB)

    Martin, D.; Paller, M.

    2007-04-17

    Historically, the estuarine portions of the Savannah River have been considered to be the only portion of the river in which significant amounts of striped bass (Morone saxatilis) spawning normally occur. A reexamination of data from 1983 through 1985 shows a region between River Kilometers 144 and 253 where significant numbers of striped bass eggs and larvae occur with estimated total egg production near that currently produced in the estuarine reaches. It appears possible that there are two separate spawning populations of striped bass in the Savannah River.

  17. Pushing the boundaries of resistance: insights from Brachypodium-rust interactions

    Directory of Open Access Journals (Sweden)

    Melania eFigueroa

    2015-07-01

    Full Text Available The implications of global population growth urge transformation of current food and bioenergy production systems to sustainability. Members of the family Poaceae are of particular importance both in food security and for their applications as biofuel substrates. For centuries, rust fungi have threatened the production of valuable crops such as wheat, barley, oat and other small grains; similarly, biofuel crops can also be susceptible to these pathogens. Emerging rust pathogenic races with increased virulence and recurrent rust epidemics around the world point out the vulnerability of monocultures. Basic research in plant immunity, especially in model plants, can make contributions to understanding plant resistance mechanisms and improve disease management strategies. The development of the grass Brachypodium distachyon as a genetically tractable model for monocots, especially temperate cereals and grasses, offers the possibility to overcome the experimental challenges presented by the genetic and genomic complexities of economically valuable crop plants. The numerous resources and tools available in Brachypodium have opened new doors to investigate the underlying molecular and genetic bases of plant-microbe interactions in grasses and evidence demonstrating the applicability and advantages of working with B. distachyon is increasing. Importantly, several interactions between B. distachyon and devastating plant pathogens, such rust fungi, have been examined in the context of non-host resistance. Here, we discuss the use of B. distachyon in these various pathosystems. Exploiting B. distachyon to understand the mechanisms underpinning disease resistance to non-adapted rust fungi may provide effective and durable approaches to fend off these pathogens. The close phylogenetic relationship among Brachypodium spp. and grasses with industrial and agronomic value support harnessing this model plant to improve cropping systems and encourage its use in

  18. Resistance to recombinant stem rust race TPPKC in hard red spring wheat.

    Science.gov (United States)

    Klindworth, D L; Miller, J D; Williams, N D; Xu, S S

    2011-08-01

    The wheat (Triticum aestivum L.) stem rust (Puccinia graminis Pers.:Pers. f.sp. tritici Eriks. and Henn.) resistance gene SrWld1 conditions resistance to all North American stem rust races and is an important gene in hard red spring (HRS) wheat cultivars. A sexually recombined race having virulence to SrWld1 was isolated in the 1980s. Our objective was to determine the genetics of resistance to the race. The recombinant race was tested with the set of stem rust differentials and with a set of 36 HRS and 6 durum cultivars. Chromosomal location studies in cultivars Len, Coteau, and Stoa were completed using aneuploid analysis, molecular markers, and allelism tests. Stem rust differential tests coded the race as TPPKC, indicating it differed from TPMKC by having added virulence on Sr30 as well as SrWld1. Genes effective against TPPKC were Sr6, Sr9a, Sr9b, Sr13, Sr24, Sr31, and Sr38. Genetic studies of resistance to TPPKC indicated that Len, Coteau, and Stoa likely carried Sr9b, that Coteau and Stoa carried Sr6, and Stoa carried Sr24. Tests of HRS and durum cultivars indicated that five HRS and one durum cultivar were susceptible to TPPKC. Susceptible HRS cultivars were postulated to have SrWld1 as their major stem rust resistance gene. Divide, the susceptible durum cultivar, was postulated to lack Sr13. We concluded that although TPPKC does not constitute a threat similar to TTKSK and its variants, some cultivars would be lost from production if TPPKC became established in the field. PMID:21573955

  19. Stem rust (Puccinia graminis ssp. graminicola Urban its hosts and harmfulness in grasses grown for seed

    Directory of Open Access Journals (Sweden)

    Maria Prończuk

    2013-12-01

    Full Text Available Stem rust development on four species of grasses was studied in field experiments conducted at Radzików in 1997-2001. Population of Puccinia graminis ssp. graminicola from different hosts was characterised and their harmfulness for grass grown for seed was estimated. The materials for study were ecotypes and strains of Lolium perenne, Festuca rubra, Poa pratensis and Deschampsia caespitosa collected in breeding nursery and cultivars and strains of L.perenne, F.rubra, P.pratensis cultivated for seed. It was found that the changes in environmental conditions during last years influenced earlier occurrence of stem rust on grasses in Poland. All examined species were the host of P.graminis ssp. graminicola, however the period of infection of particular hosts were different. L.perenne and D.caespitosa were infected in early summer but F.rubra and P.pratensis in late summer or in the autumn. Morphological analysis of spores of P.graminis ssp. graminicola have shoved significant differences between populations obtained from L.perenne and D.caespitosa. Some differences were found between populations from F.rubra and P.pratensis also, but they need more study. Every year occurrence of stem rust on L.perenne and D.caespitosa and its relation with spring temperature in Radzików indicated that populations of patogen could overwinter in local turf. Incidental appearance of stem rust on F.rubra and P.pratensis in centre of Poland allowed to suppose that spores of these forms might be transfer by wind from other regions. The investigation revealed that stem rust can be dangerous for L.perenne grown for seed when infection occurs at flowering time. It has been established that infection of F.rubra and P.pratensis in autumn should not be disregarded. Damages of leaves by P.graminis ssp. graminicola substantially limited plant heading in the next year.

  20. Pathotype-specific QTL for stem rust resistance in Lolium perenne.

    Science.gov (United States)

    Pfender, W F; Slabaugh, M E

    2013-05-01

    A genetic map populated with RAD and SSR markers was created from F1 progeny of a stem rust-susceptible and stem rust-resistant parent of perennial ryegrass (Lolium perenne). The map supplements a previous map of this population by having markers in common with several other Lolium spp. maps including EST-SSR anchor markers from a consensus map published by other researchers. A QTL analysis was conducted with disease severity and infection type data obtained by controlled inoculation of the population with each of two previously characterized pathotypes of Puccinia graminis subsp. graminicola that differ in virulence to different host plant genotypes in the F1 population. Each pathotype activated a specific QTL on one linkage group (LG): qLpPg1 on LG7 for pathotype 101, or qLpPg2 on LG1 for pathotype 106. Both pathotypes also activated a third QTL in common, qLpPg3 on LG6. Anchor markers, present on a consensus map, were located in proximity to each of the three QTL. These QTL had been detected also in previous experiments in which a genetically heterogeneous inoculum of the stem rust pathogen activated all three QTL together. The results of this and a previous study are consistent with the involvement of the pathotype-specific QTL in pathogen recognition and the pathotype-nonspecific QTL in a generalized resistance response. By aligning the markers common to other published reports, it appears that two and possibly all three of the stem rust QTL reported here are in the same general genomic regions containing some of the L. perenne QTL reported to be activated in response to the crown rust pathogen (P. coronata). PMID:23361523