WorldWideScience

Sample records for causing stripe rust

  1. Evidence for Increased Aggressiveness in a Recent Widespread Strain of Puccinia striiformis f. sp. tritici Causing Stripe Rust of Wheat

    DEFF Research Database (Denmark)

    Milus, Eugene A; Kristensen, Kristian; Hovmøller, Mogens S

    2009-01-01

    Stripe rust (yellow rust) of wheat, caused by Puccinia striiformis f. sp. tritici, has become more severe in eastern United States, Australia, and elsewhere since 2000. Recent research has shown that this coincided with a global spread of two closely related strains that were similar based on vir...... that wheat rust fungi can adapt to warmer temperatures and cause severe disease in previously unfavorable environments......Stripe rust (yellow rust) of wheat, caused by Puccinia striiformis f. sp. tritici, has become more severe in eastern United States, Australia, and elsewhere since 2000. Recent research has shown that this coincided with a global spread of two closely related strains that were similar based...

  2. Models for predicting potential yield loss of wheat caused by stripe rust in the U.S. Pacific Northwest.

    Science.gov (United States)

    Sharma-Poudyal, D; Chen, X M

    2011-05-01

    Climatic variation in the U.S. Pacific Northwest (PNW) affects epidemics of wheat stripe rust caused by Puccinia striiformis f. sp. tritici. Previous models only estimated disease severity at the flowering stage, which may not predict the actual yield loss. To identify weather factors correlated to stripe rust epidemics and develop models for predicting potential yield loss, correlation and regression analyses were conducted using weather parameters and historical yield loss data from 1993 to 2007 for winter wheat and 1995 to 2007 for spring wheat. Among 1,376 weather variables, 54 were correlated to yield loss of winter wheat and 18 to yield loss of spring wheat. Among the seasons, winter temperature variables were more highly correlated to wheat yield loss than the other seasons. The sum of daily temperatures and accumulated negative degree days of February were more highly correlated to winter wheat yield loss than the other monthly winter variables. In addition, the number of winter rainfall days was found correlated with yield loss. Six yield loss models were selected for each of winter and spring wheats based on their better correlation coefficients, time of weather data availability during the crop season, and better performance in validation tests. Compared with previous models, the new system of using a series of the selected models has advantages that should make it more suitable for forecasting and managing stripe rust in the major wheat growing areas in the U.S. PNW, where the weather conditions have become more favorable to stripe rust.

  3. Effect of stripe rust on the yield response of wheat to nitrogen

    Institute of Scientific and Technical Information of China (English)

    Rakhesh; Devadas; Steven; Simpfendorfer; David; Backhouse; David; W.Lamb

    2014-01-01

    Nitrogen(N) is the most important fertiliser element determining the productivity of wheat.N nutrition is known to affect the level of stripe rust infection, with higher N associated with increased disease severity. Stripe rust, caused by Puccinia striiformis f. sp. tritici, is a major yield-limiting disease of wheat in Australia. This paper describes experiments designed to investigate the agronomic response to the interaction of various levels of N application and stripe rust severity in wheat varieties differing in response. Experimental plots were established in crop seasons 2006 and 2007 on the Liverpool Plains of northern NSW, Australia.Yield, biomass, grain protein content(GPC) and harvest index(HI) data were recorded.Increased rates of N increased the severity of stripe rust during grain filling. N application also increased yield and GPC in all varieties in both years. Stripe rust reduced the yield of the rust-susceptible wheat varieties, and GPC and proportion of added N recovered in the grain were also reduced in one year but not the other. It was evident from our experiment that stripe rust caused yield loss accompanied by either no change or reduction in GPC, indicating that the total amount of N entering the grain was reduced by stripe rust. The effects of stripe rust on N yield are most likely associated with reduced uptake of N during grain filling.

  4. Introgression of leaf rust and stripe rust resistance from Sharon goatgrass (Aegilops sharonensis Eig) into bread wheat (Triticum aestivum L.)

    Science.gov (United States)

    Leaf rust and stripe rust are devastating wheat diseases, causing significant yield losses in many regions of the world. The use of resistant varieties is the most efficient way to protect wheat crops from these diseases. Sharon goatgrass (Aegilops sharonensis or AES), which is a diploid wild relati...

  5. Identification and mapping of leaf, stem and stripe rust resistance quantitative trait loci and their interactions in durum wheat.

    Science.gov (United States)

    Singh, A; Pandey, M P; Singh, A K; Knox, R E; Ammar, K; Clarke, J M; Clarke, F R; Singh, R P; Pozniak, C J; Depauw, R M; McCallum, B D; Cuthbert, R D; Randhawa, H S; Fetch, T G

    2013-02-01

    Leaf rust (Puccinia triticina Eriks.), stripe rust (Puccinia striiformis f. tritici Eriks.) and stem rust (Puccinia graminis f. sp. tritici) cause major production losses in durum wheat (Triticum turgidum L. var. durum). The objective of this research was to identify and map leaf, stripe and stem rust resistance loci from the French cultivar Sachem and Canadian cultivar Strongfield. A doubled haploid population from Sachem/Strongfield and parents were phenotyped for seedling reaction to leaf rust races BBG/BN and BBG/BP and adult plant response was determined in three field rust nurseries near El Batan, Obregon and Toluca, Mexico. Stripe rust response was recorded in 2009 and 2011 nurseries near Toluca and near Njoro, Kenya in 2010. Response to stem rust was recorded in field nurseries near Njoro, Kenya, in 2010 and 2011. Sachem was resistant to leaf, stripe and stem rust. A major leaf rust quantitative trait locus (QTL) was identified on chromosome 7B at Xgwm146 in Sachem. In the same region on 7B, a stripe rust QTL was identified in Strongfield. Leaf and stripe rust QTL around DArT marker wPt3451 were identified on chromosome 1B. On chromosome 2B, a significant leaf rust QTL was detected conferred by Strongfield, and at the same QTL, a Yr gene derived from Sachem conferred resistance. Significant stem rust resistance QTL were detected on chromosome 4B. Consistent interactions among loci for resistance to each rust type across nurseries were detected, especially for leaf rust QTL on 7B. Sachem and Strongfield offer useful sources of rust resistance genes for durum rust breeding.

  6. Analysis on the New Features of Wheat Stripe Rust and Its Causes in Xiangyan Wheat Area%襄阳麦区小麦条锈病流行的新特点及影响因子分析

    Institute of Scientific and Technical Information of China (English)

    黄朝炎; 杨立军; 张君; 余旗红; 陈富华

    2011-01-01

    襄阳麦区是我国小麦条锈病菌最重要的冬繁区之一,也是我国小麦条锈病由川甘陕向冀鲁豫麦区传播的咽喉和桥梁地带,打好寰阳麦区阻击战对于全国小麦条锈病防控具有重要意义.总结了襄阳麦区近年来小麦条锈病出现的一些新特点,即发生频率明显加快、为害高峰期提前、传播途径出现新变化、暴发性更强;从品种抗性、菌源基数以及气候条件等方面对其成因进行了分析.%Xiangyang is not only one of the major winter reproduction areas of wheat stripe rust, but also the channel and bridge area for wheat stripe rust difusing from Sichuan, Gansu and Shaanxi to Hebei, Shandong and Henan. Blocking wheat stripe rust in Xiangyang area has great significance for preventing and controlling this disease in China. The emergence of some new features and the causes of wheat stripe rust in Xiangyang wheat area in recent years were analyzed. It was appeared that some new features of this disease had been shown, including the speeding up of outbreak frequency, advancement of peak damage period, new variety of the prevalence pathway, and stronger fulminating. The causes were analyzed through the aspects of varieties resistance, pathogens and climatic factors.

  7. Genome-wide association mapping for resistance to leaf and stripe rust in winter-habit hexaploid wheat landraces

    Science.gov (United States)

    Leaf rust, caused by Puccinia triticina (Pt), and stripe rust, caused by P. striiformis f. sp. tritici (Pst), are destructive foliar diseases of wheat worldwide. Breeding for disease resistance is the preferred strategy of managing both diseases. The continued emergence of new races of Pt and Pst re...

  8. Genes for resistance to stripe rust on chromosome 2B and their application in wheat breeding

    Institute of Scientific and Technical Information of China (English)

    Peigao Luo; Xueyun Hu; Huaiyu Zhang; Zhenglong Ren

    2009-01-01

    Stripe rust,caused by Puccinia striiformis f.sp.tritici,is one of the most damaging diseases of wheat worldwide.Growing resistant cultivars is the most economic and environmental friendly way to control the disease.There are many resistance genes to stripe rust located on wheat chromosome 2B.Here,we propose a strategy to construct the recombinant wheat chromosome 2B with multiple resistances to stripe rust by making crosses between wheat lines or cultivars carrying Yr genes and using marker-assisted selection,based on the reported information about resistance spectrum,chromosomal location,and linked markers of the genes.Pyramiding the resistance genes on 2B would afford a valuable strategy to control the disease by cultivating varieties with durable resistance.The possibility,efficiency,and prospect of the suggested strategy are reviewed in the paper.

  9. Ultrastructure of Slow-Rusting Expression of Wheat to Stripe Rust

    Institute of Scientific and Technical Information of China (English)

    MA Qing; SHANG Hong-sheng; QIANG Lei; XIE Fang-qin; SUN Hui

    2005-01-01

    The ultrastructure of wheat cultivars with slow-rusting resistance expression to the stripe rust, Puccinia striiformis, was studied through TEM. The results show that slow-rusting has the same hypersensitive response characters with the low infection type resistance, but the mesophyll cell necrotized less in number, thereby only partially inhibiting the extension of rust fungus, and the fungus being inhibited and necrosed slighter in degree. Apart from the occurrence of hypersensitiveness, the response of the host cells in slow-rusting wheat cultivars to the infection of fungus also produces structural materials associated with defense reaction, but distinctly less than that in resistant cultivar. Thus, it is suggested that the slow-rusting resistance might have a similar mechanism with the low infection type resistance of race specificity,but with lower intensity.

  10. Introgression of leaf rust and stripe rust resistance from Sharon goatgrass (Aegilops sharonensis Eig) into bread wheat (Triticum aestivum L.).

    Science.gov (United States)

    Millet, E; Manisterski, J; Ben-Yehuda, P; Distelfeld, A; Deek, J; Wan, A; Chen, X; Steffenson, B J

    2014-06-01

    Leaf rust and stripe rust are devastating wheat diseases, causing significant yield losses in many regions of the world. The use of resistant varieties is the most efficient way to protect wheat crops from these diseases. Sharon goatgrass (Aegilops sharonensis or AES), which is a diploid wild relative of wheat, exhibits a high frequency of leaf and stripe rust resistance. We used the resistant AES accession TH548 and induced homoeologous recombination by the ph1b allele to obtain resistant wheat recombinant lines carrying AES chromosome segments in the genetic background of the spring wheat cultivar Galil. The gametocidal effect from AES was overcome by using an "anti-gametocidal" wheat mutant. These recombinant lines were found resistant to highly virulent races of the leaf and stripe rust pathogens in Israel and the United States. Molecular DArT analysis of the different recombinant lines revealed different lengths of AES segments on wheat chromosome 6B, which indicates the location of both resistance genes.

  11. Identification of QTL for adult plant resistance to stripe rust in Chinese wheat landrace Caoxuan 5

    Science.gov (United States)

    Yellow (or stripe) rust, caused by Puccinia striiformis f. sp. tritici (Pst), is an important wheat disease worldwide. The development of wheat cultivars with adult plant resistance (APR) has been given increasing emphasis in recent years because of the reputed durability of APR compared to all-stag...

  12. Characterization of two adult-plant stripe rust resistance genes on chromosomes 3BS and 4BL in soft red winter wheat

    Science.gov (United States)

    Stripe rust, caused by Puccinia striiformis f. sp. tritici, is an important foliar disease of soft red winter wheat (SRWW) in the eastern U.S. However, very few resistance genes have been characterized in the SRWW germplasm pool. The SRWW line VA96W-270 is known to be resistant to stripe rust race P...

  13. New slow-rusting leaf rust and stripe rust resistance genes Lr67 and Yr46 in wheat are pleiotropic or closely linked.

    Science.gov (United States)

    Herrera-Foessel, Sybil A; Lagudah, Evans S; Huerta-Espino, Julio; Hayden, Matthew J; Bariana, Harbans S; Singh, Davinder; Singh, Ravi P

    2011-01-01

    The common wheat genotype 'RL6077' was believed to carry the gene Lr34/Yr18 that confers slow-rusting adult plant resistance (APR) to leaf rust and stripe rust but located to a different chromosome through inter-chromosomal reciprocal translocation. However, haplotyping using the cloned Lr34/Yr18 diagnostic marker and the complete sequencing of the gene indicated Lr34/Yr18 is absent in RL6077. We crossed RL6077 with the susceptible parent 'Avocet' and developed F(3), F(4) and F(6) populations from photoperiod-insensitive F(3) lines that were segregating for resistance to leaf rust and stripe rust. The populations were characterized for leaf rust resistance at two Mexican sites, Cd. Obregon during the 2008-2009 and 2009-2010 crop seasons, and El Batan during 2009, and for stripe rust resistance at Toluca, a third Mexican site, during 2009. The F(3) population was also evaluated for stripe rust resistance at Cobbitty, Australia, during 2009. Most lines had correlated responses to leaf rust and stripe rust, indicating that either the same gene, or closely linked genes, confers resistance to both diseases. Molecular mapping using microsatellites led to the identification of five markers (Xgwm165, Xgwm192, Xcfd71, Xbarc98 and Xcfd23) on chromosome 4DL that are associated with this gene(s), with the closest markers being located at 0.4 cM. In a parallel study in Canada using a Thatcher × RL6077 F(3) population, the same leaf rust resistance gene was designated as Lr67 and mapped to the same chromosomal region. The pleiotropic, or closely linked, gene derived from RL6077 that conferred stripe rust resistance in this study was designated as Yr46. The slow-rusting gene(s) Lr67/Yr46 can be utilized in combination with other slow-rusting genes to develop high levels of durable APR to leaf rust and stripe rust in wheat.

  14. Identification and Validation of a Major Quantitative Trait Locus for Slow-rusting Resistance to Stripe Rust in Wheat

    Institute of Scientific and Technical Information of China (English)

    Xiaohua Cao; Jianghong Zhou; Xiaoping Gong; Guangyao Zhao; Jizeng Jia; Xiaoquan Qi

    2012-01-01

    Stripe (yellow) rust,caused by Puccinia striiformis Westend.f.sp.tritici Eriks (Pst),is one of the most important wheat (Triticum aestivum L.) diseases and causes significant yield losses.A recombinant inbred (RI) population derived from a cross between Yanzhan 1 and Xichang 76-9 cultivars was evaluated for resistance to wheat stripe rust strain CYR32 at both the seedling and adult plant stages.Four resistance quantitative trait loci (QTLs) were detected in this population,in which the major one,designated as Yrq1,was mapped on chromosome 2DS.The strategy of using the Brachypodium distachyon genome,wheat expressed sequence tags and a draft DNA sequences (scaffolds) of the D-genome (Aegilops tauschii Coss.) for the development of simple sequence repeat (SSR) markers was successfully used to identify 147 SSRs in hexaploid wheat.Of the 19 polymorphic SSRs in the RI population,17 SSRs were mapped in the homeologous group 2 chromosomes near Yrq1 region and eight SSRs were genetically mapped in the 2.7 cM region of Yrq1,providing abundant DNA markers for fine-mapping of Yrq1 and marker-assisted selection in wheat breeding program.The effectiveness of Yrq1 was validated in an independent population,indicating that this resistance QTL can be successfully transferred into a susceptible cultivar for improvement of stripe rust resistance.

  15. Molecular Screening and Resistance Evaluation of American Wheat Cultivars to Chinese Stripe Rust Races

    Institute of Scientific and Technical Information of China (English)

    BAI Yu-lu; ZHANG Chun-yu; SUN Quan; LIN Feng; CUI Na; XU Shi-chang; GAO Yang; XU Xiao-dan

    2010-01-01

    Stripe rust,caused by Puccinia striiformis f.sp.tritici,is one of the major diseases of wheat in China.In order to asses the resistance levels and existing Yr genes among 59 wheat cultivars (lines) from the Pacific Northwest (PNW) of the United States,to provide resistance resources for genetic improvement of wheat stripe rust resistance in China,59 wheat cultivars (lines) from PNW of the United States were infected by 3 mixed races of predominant Chinese stripe rust races CRY31,CRY32,and CRY33 to evaluate their resistance at seedling and adult plant stages,and screened with molecular markers tightly linked to currently effective all-stage resistance genes Yr10,Yr15 and adult plant resistance genes Yr18,Yr39.Of 59 American cultivars (lines),five cultivars (lines),Expresso,02W50076,ACS52610,WA008012,and WA00801833,had all-stage resistance,showing resistance to mixed races of CRY31,CRY32,and CRY33 at both seedling and adult plant stages.33 cultivars (lines) had adult plant resistance,only showing resistance to stripe rust at adult stage.Based on the molecular screening,none of the 59 PNW cultivars (lines) had the polymorphic bands of linked markers to Yr10.There were 12,33 and 29 cultivars (lines) which had polymorphic bands of linked markers to Yr15,Yr18 and Yr39,accounting for 20,55 and 49% of the 59 PNW cultivars (lines),respectively.All these results suggested that Yr15,Yr18 and Yr39 were widespread among PNW cultivars (cultivars) and could be utilized in Chinese wheat stripe rust resistance breeding.

  16. Integrated Management of Wheat Stripe Rust Caused by Puccinia striiformis f. sp. tritici in China%中国小麦条锈病综合治理理论与实践

    Institute of Scientific and Technical Information of China (English)

    陈万权; 康振生; 马占鸿; 徐世昌; 金社林; 姜玉英

    2013-01-01

    小麦条锈病是影响小麦安全生产的重要生物灾害。文中介绍了全国小麦锈病工作者通过60多年通力协作,对小麦条锈病综合治理理论和技术研究取得的显著成绩,系统揭示了中国小麦条锈病的越冬、越夏规律、菌源传播规律、病菌致病性变异途径以及品种抗病性“丧失”的规律与原因,发现中国小麦条锈病存在秋季菌源和春季菌源2大菌源基地。提出了“综合治理越夏异变区、持续控制冬季繁殖区和全面预防春季流行区”的病害源头治理策略,研发出小麦条锈病分子诊断、异地测报以及抗锈良种、药剂拌种、退麦改种、适期晚种和带药侦查、打点保面等一系列病害监测预警和关键防治技术,构建了以生物多样性利用为核心的中国小麦条锈病菌源基地综合治理技术体系,在生产上大规模推广应用,防病保产效果极其显著。文中并对病菌致病性变异机制、早期预警和越夏易变区生态治理等问题进行了讨论。%Wheat stripe (yellow) rust caused by Puccinia striiformis f. sp. tritici (Pst) is an important disaster in wheat production. A great deal of effort has been spent on the strategies and techniques of integrated management of wheat stripe rust for over six decades by a teamwork nationwide in China. It has been fully revealed that the over-summering and over-wintering areas of Pst inter-regional dispersal of inoculum, the way of virulence variation, and breakdown causation of wheat cultivar resistance. Based on the geographical conditions, wheat growth, occurrence and dispersal of disease etc, wheat stripe rust in China can be divided into three major zones, namely the autumn sources of inocula, the spring sources of inocula, and spring epidemic areas. A major strategy of headstream management has been put forward, i.e.‘integrated management of wheat stripe rust in the sources of inocula to protect wheat safe

  17. Characterization of the Wheat Stripe Rust (Puccinia striiformis f. sp. tritici) Fungal Effector Candidate PEC6 and Its Corresponding Host Targets

    DEFF Research Database (Denmark)

    Liu, Changhai

    and understanding their mechanisms of action is fundamentally important to guide future fights against the stripe rust disease. In this PhD project, I studied the potential function of six stripe rust fungal effector candidates which are highly expressed in haustoria, by employing the Pseudomonas fluorescens Et......Stripe rust caused by Puccinia striiformis f. sp. tritici (Pst), is one of the most important fungal diseases on wheat worldwide and a serious threat to wheat production. Understanding the plant-microbe interaction mechanism is the basic step to assist future plant breeding aiming at increasing...... disease resistance. Based on the sequenced stripe rust fungus genome, several hundreds of small, secreted candidates for effector proteins are predicted. Effectors are believed to be pivotal for fungal pathogenicity with key roles in suppressing host defense. Thus, identifying key effectors...

  18. Novel QTL for stripe rust resistance on chromosomes 4A and 6B in soft white winter wheat cultivars

    Science.gov (United States)

    Stripe rust (caused by Puccinia striiformis f. sp. tritici) of wheat (Triticum aestivum) is a devastating disease in temperate regions when susceptible varieties are grown and environmental conditions sustain high disease pressures. With frequent and severe outbreaks, disease resistance is a key too...

  19. Association analysis of SP-SNPs and Avr genes in Puccinia striiformis f. sp. tritici, the wheat stripe rust pathogen

    Science.gov (United States)

    Puccinia striiformis f. sp. tritici (Pst) is one of the pathogenic fungi on wheat, caused stripe rust disease which is a great threat for wheat production all over the world. Intensive efforts have been made to study genetics of wheat resistance to this disease, but few on avirulence of the pathogen...

  20. Characterization of resistance to stripe rust in contemporary cultivars and lines of winter wheat from the eastern United States

    Science.gov (United States)

    Stripe rust, caused by Puccinia striiformis f. sp. tritici, has been an important disease of winter wheat (Triticum aestivum) in the eastern United States since 2000, when a new strain of the pathogen emerged. The new strain overcame the widely used resistance gene, Yr9, and was more aggressive and...

  1. Genetics of adult plant stripe rust resistance in CSP44, a selection from Australian wheat

    Indian Academy of Sciences (India)

    Renu Khanna; U. K. Bansal; R. G. Saini

    2005-12-01

    Wheat line CSP44, a selection from an Australian bread wheat cultivar Condor, has shown resistance to stripe rust in India since the last twenty years. Seedlings and adult plants of CSP44 showed susceptible infection types against stripe rust race 46S119 but displayed average terminal disease severity of 2.67 on adult plants against this race as compared to 70.33 of susceptible Indian cultivar, WL711. This suggests the presence of nonhypersensitive adult plant stripe rust resistance in the line CSP44. The evaluation of F1, F2 and F3 generations and F6 SSD families from the cross of CSP44 with susceptible wheat cultivar WL711 for stripe rust severity indicated that the resistance in CSP44 is based on two genes showing additive effect. One of these two genes is Yr18 and the second gene is not yet described.

  2. Molecular Mapping of a Gene for Resistance to Stripe Rust in Wheat Variety PIW138

    Institute of Scientific and Technical Information of China (English)

    YUE Yan-li; YAO Zhan-jun; REN Xin-xin; WANG Li

    2010-01-01

    Stripe rust,caused by Puccinia striiformis f.sp.tritici(Pst),is one of the most damaging diseases of common wheat(Triticum aestivum L.).Wheat variety PIW138 introduced from Pakistan is resistant to the currently prevailing Pst race CYR32 in China.In this study,the bulked segregant analysis(BSA)method and simple sequence repeat(SSR)markers were used to map the stripe rust resistance gene in PIW138.The resistant and susceptible DNA bulks were prepared from the segregating F2 population of the cross between Thatcher,a susceptible variety as the female parent,and PIW138 as the male parent.The segregation of resistant and susceptible F2 plants inoculated with CYR32 indicated that single dominant gene determined the reactions of PIW138 line and temporarily designated as YrP138.Total 200 SSR primers were screened,and 4 SSR markers,Xwmc52,Xbarc61,Xgwm268,and Xgwm153,on chromosome 1B were found to be polymorphic between the resistant and the susceptible DNA bulks as well as their parents.Genetic linkage was tested on the segregating F2 population with 259 plants,including 196 resistant and 63 susceptible plants.All 4 SSR markers were linked to the stripe rust resistance gene in PIW138.The genetic distances of Xwmc52,Xbarc61,Xgwm268,and Xgwm153to the resistance gene were 29.8,6.2,6.8,and 8.2 cM,respectively.

  3. Genome-Wide Association Mapping for Resistance to Leaf and Stripe Rust in Winter-Habit Hexaploid Wheat Landraces.

    Directory of Open Access Journals (Sweden)

    Albert Kertho

    Full Text Available Leaf rust, caused by Puccinia triticina (Pt, and stripe rust, caused by P. striiformis f. sp. tritici (Pst, are destructive foliar diseases of wheat worldwide. Breeding for disease resistance is the preferred strategy of managing both diseases. The continued emergence of new races of Pt and Pst requires a constant search for new sources of resistance. Here we report a genome-wide association analysis of 567 winter wheat (Triticum aestivum landrace accessions using the Infinium iSelect 9K wheat SNP array to identify loci associated with seedling resistance to five races of Pt (MDCL, MFPS, THBL, TDBG, and TBDJ and one race of Pst (PSTv-37 frequently found in the Northern Great Plains of the United States. Mixed linear models identified 65 and eight significant markers associated with leaf rust and stripe rust, respectively. Further, we identified 31 and three QTL associated with resistance to Pt and Pst, respectively. Eleven QTL, identified on chromosomes 3A, 4A, 5A, and 6D, are previously unknown for leaf rust resistance in T. aestivum.

  4. Mapping of stripe rust resistance gene in an Aegilops caudata introgression line in wheat and its genetic association with leaf rust resistance

    Indian Academy of Sciences (India)

    PUNEET INDER TOOR; SATINDER KAUR; MITALY BANSAL; BHARAT YADAV; PARVEEN CHHUNEJA

    2016-12-01

    A pair of stripe rust and leaf rust resistance genes was introgressed from Aegilops caudata, a nonprogenitor diploid species with the CC genome, to cultivated wheat. Inheritance and genetic mapping of stripe rust resistance gene in backcrossrecombinant inbred line (BC-RIL) population derived from the cross of a wheat–Ae. caudata introgression line (IL) T291-2(pau16060) with wheat cv. PBW343 is reported here. Segregation of BC-RILs for stripe rust resistance depicted a single major gene conditioning adult plant resistance (APR) with stripe rust reaction varying from TR-20MS in resistant RILs signifying the presence of some minor genes as well. Genetic association with leaf rust resistance revealed that two genes are located at a recombination distance of 13%. IL T291-2 had earlier been reported to carry introgressions on wheat chromosomes 2D, 3D, 4D, 5D, 6D and 7D. Genetic mapping indicated the introgression of stripe rust resistance gene on wheat chromosome 5DS in the region carrying leaf rust resistance gene LrAc, but as an independent introgression. Simple sequence repeat (SSR) and sequence-tagged site (STS) markers designed from the survey sequence data of 5DS enriched the target region harbouring stripe and leaf rust resistance genes. Stripe rust resistance locus, temporarily designated as YrAc, mapped at the distal most end of 5DS linked with a group of four colocated SSRs and two resistance gene analogue (RGA)-STS markers at a distanceof 5.3 cM. LrAc mapped at a distance of 9.0 cM from the YrAc and at 2.8 cM from RGA-STS marker Ta5DS_2737450, YrAc and LrAc appear to be the candidate genes for marker-assisted enrichment of the wheat gene pool for rust resistance.

  5. Characterization of non-host resistance in broad bean to the wheat stripe rust pathogen

    Directory of Open Access Journals (Sweden)

    Cheng Yulin

    2012-06-01

    Full Text Available Abstract Background Non-host resistance (NHR confers plant species immunity against the majority of microbial pathogens and represents the most robust and durable form of plant resistance in nature. As one of the main genera of rust fungi with economic and biological importance, Puccinia infects almost all cereals but is unable to cause diseases on legumes. Little is known about the mechanism of this kind of effective defense in legumes to these non-host pathogens. Results In this study, the basis of NHR in broad bean (Vicia faba L. against the wheat stripe rust pathogen, Puccinia striiformis f. sp. tritici (Pst, was characterized. No visible symptoms were observed on broad bean leaves inoculated with Pst. Microscopic observations showed that successful location of stomata and haustoria formation were significantly reduced in Pst infection of broad bean. Attempted infection induced the formation of papillae, cell wall thickening, production of reactive oxygen species, callose deposition and accumulation of phenolic compounds in plant cell walls. The few Pst haustoria that did form in broad bean cells were encased in reactive oxygen and callose materials and those cells elicited cell death. Furthermore, a total of seven defense-related genes were identified and found to be up-regulated during the Pst infection. Conclusions The results indicate that NHR in broad bean against Pst results from a continuum of layered defenses, including basic incompatibility, structural and chemical strengthening of cell wall, posthaustorial hypersensitive response and induction of several defense-related genes, demonstrating the multi-layered feature of NHR. This work also provides useful information for further determination of resistance mechanisms in broad bean to rust fungi, especially the adapted important broad bean rust pathogen, Uromyces viciae-fabae, because of strong similarity and association between NHR of plants to unadapted pathogens and basal

  6. Wheat stripe rust resistance protein WKS1 reduces the ability of the thylakoid-associated ascorbate peroxidase to detoxify reactive oxygen species

    Science.gov (United States)

    Stripe rust is a devastating fungal disease of wheat caused by Puccinia striiformis f. sp. tritici(Pst). The WKS1 resistance gene has an unusual combination of serine/threonine kinase and START lipid-binding domains and confers partial resistance to Pst. Here we show that wheat plants transformed w...

  7. Multivariate analysis of stripe rust assessment and reactions of barley in multi-location nurseries

    Science.gov (United States)

    A total of 1357 entries, mainly consisting of hulled two-row, hulled six-row and hulless barley, were evaluated in stripe rust nurseries at Toluca, Mexico during 2007, Quito, Ecuador during 2007 and 2008, and Pullman and Mt. Vernon, USA [Pacific Northwest (PNW)] during 2007_2009. Disease screening d...

  8. Genetic architecture of resistance to stripe rust in a global winter wheat germplasm collection

    Science.gov (United States)

    Virulence shifts in populations of Puccinia striiformis f. sp. tritici (Pst), the causal pathogen of wheat stripe rust, are a major challenge to resistance breeding. The majority of known resistance genes are already ineffective against current races of Pst, necessitating the identification and intr...

  9. Genetic Architecture of Resistance to Stripe Rust in a Global Winter Wheat Germplasm Collection

    Directory of Open Access Journals (Sweden)

    Peter Bulli

    2016-08-01

    Full Text Available Virulence shifts in populations of Puccinia striiformis f. sp. tritici (Pst, the causal pathogen of wheat stripe rust, are a major challenge to resistance breeding. The majority of known resistance genes are already ineffective against current races of Pst, necessitating the identification and introgression of new sources of resistance. Germplasm core collections that reflect the range of genetic and phenotypic diversity of crop species are ideal platforms for examining the genetic architecture of complex traits such as resistance to stripe rust. We report the results of genetic characterization and genome-wide association analysis (GWAS for resistance to stripe rust in a core subset of 1175 accessions in the National Small Grains Collection (NSGC winter wheat germplasm collection, based on genotyping with the wheat 9K single nucleotide polymorphism (SNP iSelect assay and phenotyping of seedling and adult plants under natural disease epidemics in four environments. High correlations among the field data translated into high heritability values within and across locations. Population structure was evident when accessions were grouped by stripe rust reaction. GWAS identified 127 resistance loci that were effective across at least two environments, including 20 with significant genome-wide adjusted P-values. Based on relative map positions of previously reported genes and QTL, five of the QTL with significant genome-wide adjusted P-values in this study represent potentially new loci. This study provides an overview of the diversity of Pst resistance in the NSGC winter wheat germplasm core collection, which can be exploited for diversification of stripe rust resistance in breeding programs.

  10. Molecular Mapping of Two Novel Stripe Rust Resistant Genes YrTp1 and YrTp2 in A-3 Derived from Triticum aestivum × Thinopyrum ponticum

    Institute of Scientific and Technical Information of China (English)

    YIN Xue-gui; SHANG Xun-wu; PANG Bin-shuang; SONG Jian-rong; CAO Shi-qin; LI Jin-chang; ZHANG Xue-yong

    2006-01-01

    Loss of variety resistance to stripe rust (Puccinia striiformis Westend f. sp. tritici) is an important factor causing massive periodical epidemic of rust in wheat production. Creation and development of new races of rust pathogen have led to serious crisis of resistance loss in widely planted varieties. This has quickened the search for new resistance resources.Molecular marker could facilitate the identification of the location of novel genes. A line A-3 with high resistance(immune) to currently epidemic yellow rust races (CY29, 31, 32) was screened out in offspring of Triticum aestivum ×Thinopyrum ponticum. Segregation in F2 and BC1 populations indicated that the resistance was controlled by two independent genes: one dominant and one recessive. SSR markers were employed to map the two resistant genes in the F2 and BC1 populations. A marker WMC477-167bp located on 2BS was linked to the dominant gene with genetic distance of 0.4 cM. Another marker WMC364-208bp located on 7BS was linked to the recessive-resistant gene with genetic distance of 5.8 cM. The two genes identified in this paper might be two novel stripe rust resistant genes, which were temporarily designated as YrTpl and YrTp2, respectively. The tightly linking markers facilitate transfer of the two resistant genes into the new varieties to control epidemic of yellow rust.

  11. Genetic Analysis and Molecular Mapping of a Stripe Rust Resistance Gene YrH9014 in Wheat Line H9014-14-4-6-1

    Institute of Scientific and Technical Information of China (English)

    MA Dong-fang; HOU Lu; TANG Ming-shuang; WANG Hai-ge; LI Qiang; JING Jin-xue

    2013-01-01

    Stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is one of the most widespread and destructive wheat diseases in many wheat-growing regions of the world. The winter wheat translocation line H9014-14-4-6-1 has all stage resistance. To identify stripe rust resistance genes, the segregating populations were developed from the cross between H9014-14-4-6-1 and Mingxian 169 (a wheat cultivar susceptible to all Pst races identified in China). The seedlings of the parents and F1 plants, F2, F3 and BC1 generations were tested with Pst races under controlled greenhouse conditions. Two genes for resistance to stripe rust were identified, one dominant gene conferred resistance to SUN11-4, temporarily designated YrH9014 and the other recessive gene conferred resistance to CYR33. The bulked segregant analysis and simple sequence repeat (SSR) markers were used to identify polymorphic markers associated with YrH9014. Seven polymorphic SSR markers were used to genotype the F2 population inoculated with SUN11-4. A linkage map was constructed according to the genotypes of seven SSR markers and resistance gene. The molecular map spanned 24.3 cM, and the genetic distance of the two closest markers Xbarc13 and Xbarc55 to gene locus was 1.4 and 3.6 cM, respectively. Based on the position of SSR marker, the resistance gene YrH9014 was located on chromosome arm 2BS. Amplification of a set of nulli-tetrasomic Chinese Spring lines with SSR marker Xbarc13 indicated that YrH9014 was located on chromosome 2B. Based on chromosomal location, the reaction patterns and pedigree analysis, YrH9014 should be a novel resistance gene to stripe rust. This new gene and flanking markers got from this study should be useful for marker-assisted selection (MAS) in breeding programs for stripe rust.

  12. Appraisal of wheat germplasm for adult plant resistance against stripe rust

    Directory of Open Access Journals (Sweden)

    Saleem Kamran

    2015-12-01

    Full Text Available The resurgence of wheat stripe rust is of great concern for world food security. Owing to resistance breakdown and the appearance of new virulent high-temperature adapted races of Puccinia striiformis f. sp. tritici (Pst, many high yielding commercial varieties in the country lost their yield potential. Searching for new sources of resistance is the best approach to mitigate the problem. Quantitative resistance (partial or adult plant or durable resistance is reported to be more stable than race specific resistance. In the current perusal, a repertoire of 57 promising wheat lines along with the KLcheck line Morocco, developed through hybridisation and selection of local and international lines with International Maize and Wheat Improvement Center (CIMMYT origin, were evaluated under natural field conditions at Nuclear Institute for Agriculture and Biology (NIAB during the 2012−2013 and 2013−2014 time periods. Final rust severity (FRS, the area under the rust progress curve (AURPC, the relative area under the rust progress curve (rAURPC, and the coefficient of infection (CI were unraveled to infer the level of quantitative resistance. Final rust severity was recorded when the susceptible check exhibited 100% severity. There were 21 lines which were immune (no disease, 16 which were resistant, five moderately resistant, two resistant-to-moderately resistant, one moderately resistant-to-moderately susceptible, 5 moderately susceptible-to-susceptible, one moderately susceptible, and six exhibited a susceptible response. Nevertheless, 51 lines exhibited a high level of partial resistance while the three lines, NW-5-1212-1, NW-7-30-1, and NW-7-5 all showed a moderate level of partial resistance based on FRS, while 54 lines, on the basis of AURPC and rAURPC, were identified as conferring a high level of partial resistance. Moreover, adult plant resistance was conferred by 47 wheat lines, based on CI value. It was striking that, 13 immune lines

  13. Yr32 for resistance to stripe (yellow) rust present in the wheat cultivar Carstens V

    DEFF Research Database (Denmark)

    Eriksen, L.; Afshari, F.; Christiansen, M.J.;

    2004-01-01

    in Carstens V. For this latter purpose, stripe rust response data from both seedling and field tests on a doubled haploid population consisting of 77 lines were compared to an available molecular map for the same lines using a non-parametric quantitative trait loci (QTL) analysis. Results obtained in Denmark...... in this chromosome arm, it was designated Yr32. Further QTLs originating from Senat were located in chromosomes 1BL, 4D, and 7DS and from Savannah on 5B, but it was not possible to characterize them as unique resistance genes in any definitive way. Yr32 was detected in several wheats, including the North American...

  14. A novel fungal hyperparasite of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust.

    Directory of Open Access Journals (Sweden)

    Gangming Zhan

    Full Text Available Puccinia striiformis f. sp. tritici (Pst, the causal fungus of wheat stripe rust, was previously reported to be infected by Lecanicillium lecanii, Microdochium nivale and Typhula idahoensis. Here, we report a novel hyperparasite on Pst. This hyperparasitic fungus was identified as Cladosporium cladosporioides (Fresen. GA de Vries based on morphological characteristics observed by light and scanning electron microscopy together with molecular data. The hyperparasite reduced the production and viability of urediniospores and, therefore, could potentially be used for biological control of wheat stripe rust.

  15. Genetics and Molecular Mapping of a High-Temperature Resistance Gene to Stripe Rust in Seeding-Stage in Winter Wheat Cultivar Lantian 1

    Institute of Scientific and Technical Information of China (English)

    MA Dong-fang; JING Jin-xue; HOU Dong-yuan; LI Qiang; ZHOU Xin-li; DU Jiu-yuan; and LU Qing-lin

    2013-01-01

    Stripe rust, caused by Puccinia striiformis Westend. f. sp. tritici (Pst), is a severe foliar disease of common wheat (Triticum aestivum L.) in the world. Resistance is the best approach to control the disease. The winter wheat cultivar Lantian 1 has high-temperature resistance to stripe rust. To determing the gene(s) for the stripe rust resistance, Lantian 1 was crossed with Mingxian 169 (M169). Seedlings of the parents, and F1, F2 and F2-3 progenies were tested with races CYR32 of Pst under controlled greenhouse conditions. Lantian 1 has a single partially dominant gene conferred resistance to race CYR32, designated as YrLT1. Simple sequence repeat (SSR) techniques were used to identify molecular markers linked to YrLT1. A linkage group of five SSR markers was constructed for YrLT1 using 166 F2 plants. Based on the SSR marker consensus map and the position on wheat chromosome, the resistance gene was assigned on chromosome 2DL. Amplification of a set of nulli-tetrasomic Chinese Spring lines with SSR marker Xwmc797 confirmed that the resistance gene was located on the long arm of chromosome 2D. Because of its chromosomal location and the high-temperature resistance, this gene is different from previously described genes. The molecular map spanned 29.9 cM, and the genetic distance of two close markers Xbarc228 and Xcfd16 to resistance gene locus was 4.0 and 5.7 cM, respectively. The polymorphism rates of the flanking markers in 46 wheat lines were 2.1 and 2.1%, respectively;and the two markers in combination could distinguish the alleles at the resistance locus in 97.9%of tested genotypes. This new gene and flanking markers should be useful in developing wheat cultivars with high level and possible durable resistance to stripe rust.

  16. Inheritance and Molecular Mapping of an All-Stage Stripe Rust Resistance Gene Derived from the Chinese Common Wheat Landrace "Yilongtuomai".

    Science.gov (United States)

    Wu, Xue-Lian; Wang, Jian-Wei; Cheng, Yu-Kun; Ye, Xue-Ling; Li, Wei; Pu, Zhi-En; Jiang, Qian-Tao; Wei, Yu-Ming; Deng, Mei; Zheng, You-Liang; Chen, Guo-Yue

    2016-09-01

    Yellow or stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is a devastating foliar disease that affects common wheat (Triticum aestivum L.) around the world. In China, common wheat landraces are potential sources of disease and abiotic stress resistance genes for wheat improvement. Yilongtuomai (YL), a wheat landrace from Yilong County, Sichuan Province, shows high levels of resistance against most Chinese Pst races. In this study, the resistance of YL to stripe rust disease was examined in detail. Parent strains, YL and Taichung 29, a variety susceptible to Pst race CYR32, and their F1, F2, and F2:3 offspring, were inoculated with CYR32 during the seedling stage in the field or adult-plant stage in the greenhouse. Results indicated that resistance to CYR32 in YL is conferred by a single dominant gene, designated YrYL The segregating F2 population (352 plants), was analyzed in terms of its resistance locus using simple sequence repeats (SSRs), resistance gene analog polymorphisms (RGAPs), and sequence-related amplified polymorphism (SRAP). A linkage group of 6 SSRs, 2 RGAPs, and 1 SRAP was constructed for the YrYL gene. Using the identified SSRs associated with physical mapping of RGAP using Chinese Spring nullisomic-tetrasomic stocks, the YrYL gene was localized to the short arm of chromosome 7D. The gene was flanked by 1 SSR marker, Xbarc92, and 1 RGAP marker, CLRRfor/Ptokin4, at genetic distances of 5.35 and 9.86 cM, respectively. The YrYL gene was compared to other stripe rust resistance genes reported on chromosome 7D by evaluating its reaction patterns to CYR32 and its pedigree relationship. Our results suggest that the YrYL gene is a new stripe rust resistance gene.

  17. 无人机遥感监测小麦条锈病初探%Preliminary study on monitoring wheat stripe rust with using UAV

    Institute of Scientific and Technical Information of China (English)

    冷伟锋; 王海光; 胥岩; 马占鸿

    2012-01-01

    To explore the potential application of unmanned aerial vehicle (UAV) on monitoring wheat stripe rust caused by Puccinia striiformis f. sp. tritici, the image of wheat plots was obtained at the UVA platform. Correlation analyses between disease indexes of stripe rust and four kinds of the reflectance, i. e. the canopy reflectance and the reflectances in red, green and blue band extracted from the image, were conducted. The estimation models between disease indexes and each kind of the reflectance were built using linear regression method. The results showed that there was an extremely significant difference between the reflectances of diseased wheat plots and healthy plots. Disease indexes had positive correlation with the four kinds of the reflectances. Disease index was best fitted by the model with the reflectance in red band as independent variable. The diseased and the healthy areas in the UAV image were distinguished by using ISODATA method. The results indicated that UVA-based monitoring of wheat stripe rust was feasible and image analysis technologies could play a potential role in the monitoring process.

  18. Molecular mapping of a stripe rust resistance gene in wheat line C51

    Indian Academy of Sciences (India)

    Jianmin Zheng; Zehong Yan; Li Zhao; Shizhao Li; Zengyan Zhang; Resewarne Garry; Wuyun Yang; Zongjun Pu

    2014-08-01

    Stripe rust, a major disease in areas where cool temperatures prevail, can strongly influence grain yield. To control this disease, breeders have incorporated seedling resistance genes from a variety of sources outside the primary wheat gene pool. The wheat line C51, introduced from the International Center for Agricultural Research in the Dry Areas (ICARDA), Syria, confers resistance to all races of Puccinia striiformis f. sp. tritici (PST) in China. To map the resistant gene(s) against stripe rust in wheat line C51, 212 F8 recombinant inbred lines (RILs) derived from the cross X440 × C51 were inoculated with Chinese PST race CYR33 (Chinese yellow rust, CYR) in the greenhouse. The result showed that C51 carried a single dominant gene for resistance (designated YrC51) to CYR33. Simple sequence repeat (SSR) and resistance gene-analogue polymorphism (RGAP) markers that were polymorphic between the parents were used for genotyping the 212 F8 RILs. YrC51 was closely linked to two SSR loci on chromosome 2BS with genetic distances of 5.1 cM (Xgwm429) and 7.2 cM (Xwmc770), and to three RGAP markers C51R1 (XLRR For / NLRR For), C51R2 (CLRR Rev / Cre3LR-F) and C51R3 (Pto kin4/ NLRRINV2) with genetic distances of 5.6, 1.6 and 9.2 cM, respectively. These RGAP-linked markers were then converted into STS markers.Among them, one STS marker, C51STS-4, was located at a genetic distance of 1.4 cM to YrC51 and was closely associated with resistance when validated in several populations derived from crosses between C51 and Sichuan cultivars. The results indicated that C51STS-4 can be used for marker assisted selection (MAS) and would facilitate the pyramiding of YrC51 with other genes for stripe rust resistance.

  19. Molecular cytogenetic characterization of a new wheat Secale africanum 2Ra(2D) substitution line for resistance to stripe rust

    Indian Academy of Sciences (India)

    Mengping Lei; Guangrong Li; Sufen Zhang; Cheng Liu; Zujun Yang

    2011-08-01

    A stable, highly fertile wheat Secale africanum substitution line LF24, derived from the F7 generation of a cross between Mianyang11 (MY11) and Triticum durum, S. africanum amphiploid (YF) was identified through molecular cytogenetic analysis. Application of C-banding, in situ hybridization and molecular markers analysis showed that LF24 was a wheat S. africanum 2Ra(2D) substitution line. When inoculated with stripe rust isolates, T. durum and MY11 were highly susceptible, while S. africanum, YF and LF24 were immune. It is confirmed through molecular cytogenetic analysis that the stripe rust resistance of LF24 was derived from S. africanum chromosome 2Ra. We compared the banding patterns and disease resistance of reported chromosomes 2R from different S. cereale introduced into wheat background, and found that there was new stripe rust resistance gene(s) on S. africanum 2Ra. LF24 is a new substitution line which can be used as stripe rust resistant source in wheat improvement.

  20. TaRar1 Is Involved in Wheat Defense against Stripe Rust Pathogen Mediated by YrSu

    Science.gov (United States)

    Wang, Xiaojing; Wang, Yaru; Liu, Peng; Ding, Yan; Mu, Xiaoqian; Liu, Xiping; Wang, Xiaojie; Zhao, Mengxin; Huai, Baoyu; Huang, Li; Kang, Zhensheng

    2017-01-01

    RAR1 is a eukaryotic zinc-binding protein first identified as required for race-specific resistance to powdery mildew in barley. To study the function of TaRAR1 involvement in wheat (Triticum aestivum L.) defense against the infection of stripe rust pathogen Puccinia striiformis f. sp. tritici (Pst), we identified and cloned three wheat homeologous genes highly similar to the barley HvRar1, designated as TaRar1-2A, TaRar1-2B, and TaRar1-2D. The three TaRAR1 proteins all contain two conserved cysteine-and histidine-rich domains (CHORD-I and -II) shared by known RAR1-like proteins. Characterization of TaRar1 expression revealed that the expression was tissue-specific and up-regulated in wheat during stripe rust infection. Moreover, the transcription of TaRar1 was induced by methyl jasmonate, ethylene, and abscisic acid hormones. The same results were observed with drought and wound treatments. After TaRar1 was silenced in wheat cultivar Suwon11 containing the stripe rust resistance gene YrSu, the endogenous salicylic acid (SA) level, the hydrogen peroxide (H2O2) accumulation and the degree of hypersensitive response (HR) were significantly decreased, and the resistance to the avirulent pathotype of stripe rust was compromised. Meanwhile, the expression of catalase, an enzyme required for H2O2-scavenging, was up-regulated. Taken together, we concluded that TaRar1 is involved in wheat defense against stripe rust mediated by YrSu, and the defense was through SA to influence reactive oxygen species accumulation and HR.

  1. Study of the Adult-Plant Resistance at Different Growth Stages to Stripe Rust in Wheat

    Institute of Scientific and Technical Information of China (English)

    ZHAO Huan-huan; R P Singh; J Huerta-Espino; YANG Zuo-min; SUN Qi-xin

    2005-01-01

    Components of resistance were investigated for five adult-plant resistant (APR) wheat (Triticum aestivum) cultivars at six growth stages and two temperatures in the greenhouse, and disease progress in a field trial. Chinese cultivar Chuanyu 12displayed high to intermediate infection type (IT) in the greenhouse but was highly resistant in the field. Weebill showed an intermediate IT in the greenhouse and also in the field. Chpaio, Tukuru and Saar, known to carry combinations of Yr18and 2-3 additional minor genes, were highly resistant in both experiments. Greenhouse experiments indicated that the lower IT of APR cultivars initiated at tillering stage. Latent periods (LP) for APR cultivars were generally longer as the growth stage progressed. We conclude that APR to stripe rust can be best characterized in field trials although significant correlations are seen between field severity and IT and LP measured in the greenhouse.

  2. Genetic analysis and location of gene for resistance to stripe rust in wheat international differential host Strubes Dickkopf

    Indian Academy of Sciences (India)

    Feng Jing; Xu Jiao-Jiao; Lin Rin-Ming; He Yue-Qiu; Xu Shi-Chang

    2013-08-01

    Strubes Dickkopf is the sixth differential in the world set for wheat stripe (yellow) rust. It is very important to clarify its genetic character of resistance to stripe rust and to develop the molecular markers linked to resistance genes. The NIL Taichung 29*6/Strubes Dickkopf, which was obtained by Strubes Dickkopf as the gene donor and Taichung 29 as the genetic background through backcross breeding, was crossed with the recurrent parent Taichung 29, inbred, and backcrossed to obtain the F1, F2 and BC1 population. The genetic analysis of the cross Taichung 29/(Taichung 29*6/Strubes Dickkopf) was assessed by inoculating the rust race CYR26 at seedling stage. Bulked segregant analysis (BSA) and F2 segregation analysis were used for detecting polymorphic primers to locate the gene. The resistance of the NIL Taichung 29*6/Strubes Dickkopf to CYR26 was controlled by a single dominant gene, named YrSD. The primer pair Xbarc59 on 5B was linked to YrSD and the genetic distance between Xbarc59 and YrSD was 2.4 cM. The molecular marker Xbarc59 closely linked to the gene YrSD could be used in marker-assisted selection for resistance to stripe rust in wheat breeding programmes.

  3. First Report of Orange Rust of Sugarcane Caused by Puccinia kuehnii in Ivory Coast and Cameroon

    Science.gov (United States)

    Orange rust of sugarcane caused by Puccinia kuehnii was detected in Florida in 2007. It was hypothesized that the pathogen originated from Africa because brown rust of sugarcane (syn. common rust) was introduced to the Western Hemisphere from Africa. Requests for rust infected sugarcane samples were...

  4. Molecular Mapping of a Stripe Rust Resistance Gene YrH9020a Transferred from Psathyrostachys huashanica Keng on Wheat Chromosome 6D

    Institute of Scientific and Technical Information of China (English)

    LIU Ze-guang; YAO Wei-yuan; SHEN Xue-xue; CHAO Kai-xiang; FAN Yu; LI Min-zhou; WANG Bao-tong; LI Qiang; JING Jin-xue

    2014-01-01

    Stripe rust (yellow rust), caused by Puccinia striiformis f. sp. tritici (Pst), is one of the most devastating diseases of wheat throughout the world. H9020-1-6-8-3 is a translocation line originally developed from interspeciifc hybridization between wheat line 7182 and Psathyrostachys huashanica Keng and is resistant to most Pst races in China. To identify the resistance gene(s) in the translocation line, H9020-1-6-8-3 was crossed with susceptible cultivar Mingxian 169, and seedlings of the parents, F1, F2, F3, and BC1 generations were tested with prevalent Chinese Pst race CYR32 under controlled greenhouse conditions. The results indicated that there is a single dominant gene, temporarily designated as YrH9020a, conferring resistance to CYR32. The resistance gene was mapped by the F2 population from Mingxian 169/H9020-1-6-8-3. It was linked to six microsatellite markers, including Xbarc196, Xbarc202, Xbarc96, Xgpw4372, Xbarc21, and Xgdm141, lfanked by Xbarc96 and Xbarc202 with at 4.5 and 8.3 cM, respectively. Based on the chromosomal locations of these markers and the test of Chinese Spring (CS) nullitetrasomic and ditelosomic lines, the gene was assigned to chromosome 6D. According to the origin and the chromosomal location, YrH9020a might be a new resistance gene to stripe rust. The lfanking markers linked to YrH9020a could be useful for marker-assisted selection in breeding programs.

  5. Identification and Molecular Mapping of a Stripe Rust Resistance Gene from a Common Wheat Line Qzl80

    Institute of Scientific and Technical Information of China (English)

    DENGZhi-Yong; ZHANGXiang-Qi; WANGXian-Ping; JINGJian-Kang; WANGDao-Wen

    2004-01-01

    YrQz, a stripe rust disease resistance gene was identified in a common wheat (Triticumaestivum L.) line Qz180. This resistance was controlled by a single dominant gene, which was confirmed bygenetic analysis of two 1:2 populations derived from the crosses using Qz180 and two susceptible parents(Mingxian 169 and WL1). Bulked segregant analysis using simple sequence repeat (SSR) and amplifiedfragment length polymorphism (AFLP) markers was conducted in order to map the chromosomal locationof YrQz. The results indicated that YrQzwas located on the long arm of wheat chromosome 2B and residedin a re,on flanked by two SSR loci Xgwm388and Xgwm526. Two AFLP markers P35M48(452) and P36M61(163) were closely linked to KrQz with the genetic distance of 3.4 cM and 4.1 cM, respectively. To ourknowledge, this is the first molecularly mapped stripe rust resistance gene on wheat chromosome 2B.

  6. QTL analysis of the spring wheat "Chapio" identifies stable stripe rust resistance despite inter-continental genotype × environment interactions.

    Science.gov (United States)

    Yang, E-N; Rosewarne, G M; Herrera-Foessel, S A; Huerta-Espino, J; Tang, Z-X; Sun, C-F; Ren, Z-L; Singh, R P

    2013-07-01

    Chapio is a spring wheat developed by CIMMYT in Mexico by a breeding program that focused on multigenic resistances to leaf rust and stripe rust. A population consisting of 277 recombinant inbred lines (RILs) was developed by crossing Chapio with Avocet. The RILs were genotyped with DArT markers (137 randomly selected RILs) and bulked segregant analysis conducted to supplement the map with informative SSR markers. The final map consisted of 264 markers. Phenotyping against stripe rust was conducted for three seasons in Toluca, Mexico and at three sites over two seasons (total of four environments) in Sichuan Province, China. Significant loci across the two inter-continental regions included Lr34/Yr18 on 7DS, Sr2/Yr30 on 3BS, and a QTL on 3D. There were significant genotype × environment interactions with resistance gene Yr31 on 2BS being effective in most of the Toluca environments; however, a late incursion of a virulent pathotype in 2009 rendered this gene ineffective. This locus also had no effect in China. Conversely, a 5BL locus was only effective in the Chinese environments. There were also complex additive interactions. In the Mexican environments, Yr31 suppressed the additive effect of Yr30 and the 3D locus, but not of Lr34/Yr18, while in China, the 3D and 5BL loci were generally not additive with each other, but were additive when combined with other loci. These results indicate the importance of maintaining diverse, multi-genic resistances as Chapio had stable inter-continental resistance despite the fact that there were QTLs that were not effective in either one or the other region.

  7. Monodehydroascorbate reductase gene, regulated by the wheat PN-2013 miRNA, contributes to adult wheat plant resistance to stripe rust through ROS metabolism.

    Science.gov (United States)

    Feng, Hao; Wang, Xiaojie; Zhang, Qiong; Fu, Yanping; Feng, Chuanxin; Wang, Bing; Huang, Lili; Kang, Zhensheng

    2014-01-01

    Wheat stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is one of the most destructive wheat diseases worldwide. Varieties with adult plant resistance (APR) maintain effective and durable disease resistance. APR to stripe rust in wheat cultivar XZ9104 (XZ) is associated with extensive hypersensitive cell death and production of reactive oxygen species in the host. MDHAR is an important gene in the AsA-GSH cycle, and it plays an important role in maintaining the reduced pool of AsA scavenging hydrogen peroxide. microRNAs (miRNAs) were shown to engage in post-transcriptional regulation by degrading target mRNAs or repressing gene translation in plants responding to abiotic/biotic stresses. Previously, two novel miRNAs (1136-P3 and PN-2013) were isolated in wheat and the target gene of them was determined using degradome sequencing technology. In this study, the target gene was isolated and characterized as TaMDHAR, a monodehydroascorbate reductase gene. We first demonstrated that the target gene could be cleaved by these two miRNAs in tobacco leaves experimentally. However, TaMDHAR was regulated by PN-2013, not 1136-P3, in wheat-Pst adult incompatible interaction according to the expression patterns. The TaMDHAR knockdown resulted in improved wheat resistance to Pst at the seedling stage, with no influence on 1136-P3 and PN-2013 expression. The TaMDHAR knockdown resulted in a much greater H2O2 accumulation and lower APX and CAT activities together with higher expression in several PR genes. We deduced that TaMDHAR could contribute to the APR of XZ through ROS metabolism as regulated by the AsA-GSH cycle.

  8. Genome-Wide Linkage Mapping of QTL for Adult-Plant Resistance to Stripe Rust in a Chinese Wheat Population Linmai 2 × Zhong 892.

    Science.gov (United States)

    Liu, Jindong; He, Zhonghu; Wu, Ling; Bai, Bin; Wen, Weie; Xie, Chaojie; Xia, Xianchun

    2015-01-01

    Stripe rust is one of the most devastating diseases of wheat (Triticum aestivum) worldwide. Adult-plant resistance (APR) is an efficient approach to provide long-term protection of wheat from the disease. The Chinese winter wheat cultivar Zhong 892 has a moderate level of APR to stripe rust in the field. To determine the inheritance of the APR resistance in this cultivar, 273 F6 recombinant inbred lines (RILs) were developed from a cross between Linmai 2 and Zhong 892. The RILs were evaluated for maximum disease severity (MDS) in two sites during the 2011-2012, 2012-2013 and 2013-2014 cropping seasons, providing data for five environments. Illumina 90k SNP (single nucleotide polymorphism) chips were used to genotype the RILs and their parents. Composite interval mapping (CIM) detected eight QTL, namely QYr.caas-2AL, QYr.caas-2BL.3, QYr.caas-3AS, QYr.caas-3BS, QYr.caas-5DL, QYr.caas-6AL, QYr.caas-7AL and QYr.caas-7DS.1, respectively. All except QYr.caas-2BL.3 resistance alleles were contributed by Zhong 892. QYr.caas-3AS and QYr.caas-3BS conferred stable resistance to stripe rust in all environments, explaining 6.2-17.4% and 5.0-11.5% of the phenotypic variances, respectively. The genome scan of SNP sequences tightly linked to QTL for APR against annotated proteins in wheat and related cereals genomes identified two candidate genes (autophagy-related gene and disease resistance gene RGA1), significantly associated with stripe rust resistance. These QTL and their closely linked SNP markers, in combination with kompetitive allele specific PCR (KASP) technology, are potentially useful for improving stripe rust resistances in wheat breeding.

  9. TaLHY, a 1R-MYB Transcription Factor, Plays an Important Role in Disease Resistance against Stripe Rust Fungus and Ear Heading in Wheat.

    Directory of Open Access Journals (Sweden)

    Zijin Zhang

    Full Text Available LHY (late elongated hypocotyl is an important gene that regulates and controls biological rhythms in plants. Additionally, LHY is highly expressed in the SSH (suppression subtractive hybridization cDNA library-induced stripe rust pathogen (CYR32 in our previous research. To identify the function of the LHY gene in disease resistance against stripe rust, we used RACE-PCR technology to clone TaLHY in the wheat variety Chuannong19. The cDNA of TaLHY is 3085 bp long with an open reading frame of 1947 bp. TaLHY is speculated to encode a 70.3 kDa protein of 648 amino acids , which has one typical plant MYB-DNA binding domain; additionally, phylogenetic tree shows that TaLHY has the highest homology with LHY of Brachypodium distachyon(BdLHY-like. Quantitative fluorescence PCR indicates that TaLHY has higher expression in the leaf, ear and stem of wheat but lower expression in the root. Infestation of CYR32 can result in up-regulated expression of TaLHY, peaking at 72 h. Using VIGS (virus-induced gene silencing technology to disease-resistant wheat in the fourth leaf stage, plants with silenced TaLHY cannot complete their heading stage. Through the compatible interaction with the stripe rust physiological race CYR32, Chuannong 19 loses its immune capability toward the stripe rust pathogen, indicating that TaLHY may regulate and participate in the heading of wheat, as well as the defense responses against stripe rust infection.

  10. Extraction method of large genomic DNA for wheat stripe rust%小麦条锈菌大片段基因组DNA的提取方法研究

    Institute of Scientific and Technical Information of China (English)

    庄华; 岳海梅; 郑文明; 王晓杰; 康振生

    2011-01-01

    由条锈菌Puccinia striiformis引致的小麦条锈病是小麦最重要的病害之一.由于其活体寄生的特点,对小麦条锈菌的遗传学和分子生物学研究十分有限,大片段核DNA的提取研究还未见报道.高分子量基因组DNA是开展大片段基因组文库构建、基因组分析以及基因组重建的重要基础,通过系统建立和优化小麦条锈菌大片段基因组DNA的分离方法,成功获得分子量大于1Mb高质量的病菌基因组DNA.%The stripe rust caused by Puccinia striiformis is one of the most important diseases of wheat. Because of its parasitic living characteristics, studies on genetics and molecular biology of the rust is largely limited. Extraction of large fragments of nuclear DNA from P. Striiformis has not been reported, but high molecular weight genomic DNA is very important to construct a large fragment genomic library, and perform sequencing and analysis of genome. In this study, we systematically established and optimized a method of separating large genomic DNA of wheat stripe rust, and over 1Mb of genomic DNA in molecular weight was observed by pulse electrophoresis, indicating that high quality of the genomic DNA was obtained successfully, and could be used for constructing large fragment genomic library and further genomic sequencing of wheat stripe rust.

  11. The development of quick, robust, quantitative phenotypic assays for describing the host-nonhost landscape to stripe rust

    Directory of Open Access Journals (Sweden)

    Andrew Marc Dawson

    2015-10-01

    Full Text Available Nonhost resistance is often conceptualized as a qualitative separation from host resistance. Classification into these two states is generally facile, as they fail to fully describe the range of states that exist in the transition from host to nonhost. This poses a problem when studying pathosystems that cannot be classified as either host or nonhost due to their intermediate status relative to these two extremes. In this study, we investigate the efficacy of the Poaceae-stripe rust (Puccinia striiformis Westend. interaction for describing the host-nonhost landscape. First, using barley (Hordeum vulgare L. and Brachypodium distachyon (L. P. Beauv. we observed that macroscopic symptoms of chlorosis and leaf browning were associated with hyphal colonization by P. striiformis f. sp. tritici, respectively. This prompted us to adapt a protocol for visualizing fungal structures into a phenotypic assay that estimates the percent of leaf colonized. Use of this assay in intermediate host and intermediate nonhost systems found the frequency of infection decreases with evolutionary divergence from the host species. Similarly, we observed that the pathogen’s ability to complete its life cycle decreased faster than its ability to colonize leaf tissue, with no incidence of pustules observed in the intermediate nonhost system and significantly reduced pustule formation in the intermediate host system as compared to the host system, barley-P. striiformis f. sp. hordei. By leveraging the stripe rust pathosystem in conjunction with macroscopic and microscopic phenotypic assays, we now hope to dissect the genetic architecture of intermediate host and intermediate nonhost resistance using structured populations in barley and B. distachyon.

  12. Identification of expressed genes during compatible interaction between stripe rust (Puccinia striiformis and wheat using a cDNA library

    Directory of Open Access Journals (Sweden)

    Huang Lili

    2009-12-01

    Full Text Available Abstract Background Wheat stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst, is one of the most destructive diseases of wheat worldwide. To establish compatibility with the host, Pst forms special infection structures to invade the plant with minimal damage to host cells. Although compatible interaction between wheat and Pst has been studied using various approaches, research on molecular mechanisms of the interaction is limited. The aim of this study was to develop an EST database of wheat infected by Pst in order to determine transcription profiles of genes involved in compatible wheat-Pst interaction. Results Total RNA, extracted from susceptible infected wheat leaves harvested at 3, 5 and 8 days post inoculation (dpi, was used to create a cDNA library, from which 5,793 ESTs with high quality were obtained and clustered into 583 contigs and 2,160 singletons to give a set of 2,743 unisequences (GenBank accessions: GR302385 to GR305127. The BLASTx program was used to search for homologous genes of the unisequences in the GenBank non-redundant protein database. Of the 2,743 unisequences, 52.8% (the largest category were highly homologous to plant genes; 16.3% to fungal genes and 30% of no-hit. The functional classification of all ESTs was established based on the database entry giving the best E-value using the Bevan's classification categories. About 50% of the ESTs were significantly homologous to genes encoding proteins with known functions; 20% were similar to genes encoding proteins with unknown functions and 30% did not have significant homology to any sequence in the database. The quantitative real-time PCR (qRT-PCR analysis determined the transcription profiles and their involvement in the wheat-Pst interaction for seven of the gene. Conclusion The cDNA library is useful for identifying the functional genes involved in the wheat-Pst compatible interaction, and established a new database for studying Pst pathogenesis genes

  13. New Rust Disease of Korean Willow (Salix koreensis) Caused by Melampsora yezoensis, Unrecorded Pathogen in Korea.

    Science.gov (United States)

    Yun, Yeo Hong; Ahn, Geum Ran; Yoon, Seong Kwon; Kim, Hoo Hyun; Son, Seung Yeol; Kim, Seong Hwan

    2016-12-01

    During the growing season of 2015, leaf specimens with yellow rust spots were collected from Salix koreensis Andersson, known as Korean willow, in riverine areas in Cheonan, Korea. The fungus on S. koreensis was identified as the rust species, Melampsora yezoensis, based on the morphology of urediniospores observed by light and scanning electron microscopy, and the molecular properties of the internal transcribed spacer rDNA region. Pathogenicity tests confirmed that the urediniospores are the causal agent of the rust symptoms on the leaves and young stems of S. koreensis. Here, we report a new rust disease of S. koreensis caused by the rust fungus, M. yezoensis, a previously unrecorded rust pathogen in Korea.

  14. A genome-wide association study of resistance to stripe rust (Puccinia striiformis f. sp. tritici) in a worldwide collection of hexaploid spring wheat (Triticum aestivum L.).

    Science.gov (United States)

    Maccaferri, Marco; Zhang, Junli; Bulli, Peter; Abate, Zewdie; Chao, Shiaoman; Cantu, Dario; Bossolini, Eligio; Chen, Xianming; Pumphrey, Michael; Dubcovsky, Jorge

    2015-01-20

    New races of Puccinia striiformis f. sp. tritici (Pst), the causal pathogen of wheat stripe rust, show high virulence to previously deployed resistance genes and are responsible for large yield losses worldwide. To identify new sources of resistance we performed a genome-wide association study (GWAS) using a worldwide collection of 1000 spring wheat accessions. Adult plants were evaluated under field conditions in six environments in the western United States, and seedlings were tested with four Pst races. A single-nucleotide polymorphism (SNP) Infinium 9K-assay provided 4585 SNPs suitable for GWAS. High correlations among environments and high heritabilities were observed for stripe rust infection type and severity. Greater levels of Pst resistance were observed in a subpopulation from Southern Asia than in other groups. GWAS identified 97 loci that were significant for at least three environments, including 10 with an experiment-wise adjusted Bonferroni probability resistance genes and QTL, and likely represent new resistance loci. The other seven QTL mapped close to known resistance genes and allelism tests will be required to test their relationships. In summary, this study provides an integrated view of stripe rust resistance resources in spring wheat and identifies new resistance loci that will be useful to diversify the current set of resistance genes deployed to control this devastating disease.

  15. First Report of Soybean Rust Caused by Phakopsora pachyrhizi in Ghana

    Science.gov (United States)

    Nigeria is the only country in West Africa where soybean rust, caused by Phakopsora pachyrhizi has been officially reported (1). During a disease survey in Ghana in October 2006, soybean (Glycine max) leaves with rust symptoms (tan, angular lesions with erumpent sori exuding urediniospores) were ob...

  16. Construction and characterization of a full-length cDNA library for the wheat stripe rust pathogen (Puccinia striiformis f. sp. tritici

    Directory of Open Access Journals (Sweden)

    Chen Xianming

    2007-06-01

    Full Text Available Abstract Background Puccinia striiformis is a plant pathogenic fungus causing stripe rust, one of the most important diseases on cereal crops and grasses worldwide. However, little is know about its genome and genes involved in the biology and pathogenicity of the pathogen. We initiated the functional genomic research of the fungus by constructing a full-length cDNA and determined functions of the first group of genes by sequence comparison of cDNA clones to genes reported in other fungi. Results A full-length cDNA library, consisting of 42,240 clones with an average cDNA insert of 1.9 kb, was constructed using urediniospores of race PST-78 of P. striiformis f. sp. tritici. From 196 sequenced cDNA clones, we determined functions of 73 clones (37.2%. In addition, 36 clones (18.4% had significant homology to hypothetical proteins, 37 clones (18.9% had some homology to genes in other fungi, and the remaining 50 clones (25.5% did not produce any hits. From the 73 clones with functions, we identified 51 different genes encoding protein products that are involved in amino acid metabolism, cell defense, cell cycle, cell signaling, cell structure and growth, energy cycle, lipid and nucleotide metabolism, protein modification, ribosomal protein complex, sugar metabolism, transcription factor, transport metabolism, and virulence/infection. Conclusion The full-length cDNA library is useful in identifying functional genes of P. striiformis.

  17. Identification of an AFLP marker linked to the stripe rust resistance gene Yr1O in wheat

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    AFLP analysis of near-isogenic lines of the stripe rust resistance gene Yr10 was carried out with 6 Pst Ⅰprimers and 10 Taq Ⅰ -primers with the donor parent of Yr10 gene as the check. A total of about 4200 distinguishable bands were amplified, of which 5 were stable. The genetic linkage of the 5 polymorphic DNA fragments with the target gene were tested preliminarily on a segregating F2 population derived from a cross between the gene donor parent "Moro" and susceptible cultivar "Mingxian 169". The DNA fragment PT0502 was found closely linked to the Yr10 gene and cloned and sequenced. Based on the sequence specific primers for PCR were designed and synthesized. Genetic linkage analysis with 195 segregating F2 plants indicated that the genetic distance was 05 cM between the main product SC200 fragment produced by PCR with the primers and the Yr10 gene. The primers can be used to detect the Yr10 gene quickly, effectively and exactly.``

  18. Identification and mapping stripe rust resistance gene YrLM168a using extreme individuals and recessive phenotype class in a complicate genetic background.

    Science.gov (United States)

    Feng, Junyan; Chen, Guoyue; Wei, Yuming; Liu, Yaxi; Jiang, Qiantao; Li, Wei; Pu, Zhien; Lan, Xiujin; Dai, Shoufen; Zhang, Min; Zheng, Youliang

    2015-12-01

    The identification and characterization of resistance genes effective against stripe rust of wheat is beneficial for modern wheat breeding programs. Molecular markers to such genes facilitate their deployment. The variety Milan has resistance that is effective against the predominant stripe rust races in the Sichuan region. Two resistant and two susceptible F8 lines from a cross between Milan and the susceptible variety Chuannong 16 were used to investigate inheritance of the Milan resistance. Three F2 populations were developed from crosses between the resistant lines and their susceptible sibling lines (LM168a × LM168c, LM168c × LM168a, LM168b × LM168d) and used for genetic analysis and molecular mapping of the genes for resistance. The stripe rust resistance in LM168a and LM168b was conferred by a single dominant gene, temporarily designated as YrLM168a. Forty-five extreme susceptible plants from the F2 families of LM168d × LM168b were genotyped with 836 simple sequence repeat (SSR) markers to map YrLM168a. YrLM168a was mapped in chromosome 6BL. The nearest flanking markers Xwmc756 and Xbarc146 were 4.6 and 4.6 cM away from the gene at both sides, respectively. The amplification results of twenty extreme resistant (IT 0) and susceptible (IT 4) F2 plants of LM168c × LM168a and LM168a × LM168c with marker Xwmc756 further validated the mapping results. The study suggested that extreme individuals and recessive phenotype class can be successfully used for mapping genes, which should be efficient and reliable. In addition, the flanking markers near YrLM168a should be helpful in marker-assisted breeding.

  19. Characterization of wheat - Psathyrostachys huashanica small segment translocation line with enhanced kernels per spike and stripe rust resistance.

    Science.gov (United States)

    Kang, Hou-Yang; Zhang, Zhi-Juan; Xu, Li-Li; Qi, Wei-Liang; Tang, Yao; Wang, Hao; Zhu, Wei; Li, Dai-Yan; Zeng, Jian; Wang, Yi; Fan, Xing; Sha, Li-Na; Zhang, Hai-Qin; Zhou, Yong-Hong

    2016-04-01

    Psathyrostachys huashanica Keng (2n = 2x = 14, NsNs), a distant wild relative of common wheat, possesses rich potentially valuable traits, such as disease resistance and more spikelets and kernels per spike, that could be useful for wheat genetic improvement. Development of wheat - P. huashanica translocation lines will facilitate its practical utilization in wheat breeding. In the present study, a wheat - P. huashanica small segmental translocation line, K-13-835-3, was isolated and characterized from the BC1F5 population of a cross between wheat - P. huashanica amphiploid PHW-SA and wheat cultivar CN16. Cytological studies showed that the mean chromosome configuration of K-13-835-3 at meiosis was 2n = 42 = 0.10 I + 19.43 II (ring) + 1.52 II (rod). GISH analyses indicated that chromosome composition of K-13-835-3 included 40 wheat chromosomes and a pair of wheat - P. huashanica translocation chromosomes. FISH results demonstrated that the small segment from an unidentified P. huashanica chromosome was translocated into wheat chromosome arm 5DS, proximal to the centromere region of 5DS. Compared with the cultivar wheat parent CN16, K-13-835-3 was highly resistant to stripe rust pathogens prevalent in China. Furthermore, spikelets and kernels per spike in K-13-835-3 were significantly higher than those of CN16 in two growing seasons. These results suggest that the desirable genes from P. huashanica were successfully transferred into CN16 background. This translocation line could be used as novel germplasm for high-yield and, eventually, resistant cultivar breeding.

  20. Characterization of Stripe Rust Resistance Genes in the Wheat Cultivar Chuanmai45

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    Ennian Yang

    2016-04-01

    Full Text Available The objective of this research was to characterize the high level of resistance to stripe that has been observed in the released wheat cultivar, Chuanmai45. A combination of classic genetic analysis, molecular and cytogenetic methods were used to characterize resistance in an F2 population derived from Chuanmai45 and the susceptible Chuanmai42. Inheritance of resistance was shown to be conferred by two genes in Chuanmai45. Fluorescence in situ hybridization (FISH was used along with segregation studies to show that one gene was located on a 1RS.1BL translocation. Molecular markers were employed to show that the other locus was located on chromosome 4B. The defeated gene, Yr24/26, on chromosome 1BL was present in the susceptible parent and lines that recombined this gene with the 1RS.1BL translocation were identified. The germplasm, loci, and associated markers identified in this study will be useful for application in breeding programs utilizing marker-assisted selection.

  1. First report of Phakopsora pachyrhizi causing rust on soybean in Ethiopia

    Science.gov (United States)

    Soybean rust, caused by the fungal pathogen P. pachyrhizi, has been reported in 10 African countries since the first report in Uganda in 1996. In 2016, a severe epidemic caused “clouds” of urediniospores to be observed when walking through fields in mid-October 2016 in Jimma Ethiopia. In the first ...

  2. Genome-Wide Analysis of Simple Sequence Repeats and Efficient Development of Polymorphic SSR Markers Based on Whole Genome Re-Sequencing of Multiple Isolates of the Wheat Stripe Rust Fungus.

    Directory of Open Access Journals (Sweden)

    Huaiyong Luo

    Full Text Available The biotrophic parasitic fungus Puccinia striiformis f. sp. tritici (Pst causes stripe rust, a devastating disease of wheat, endangering global food security. Because the Pst population is highly dynamic, it is difficult to develop wheat cultivars with durable and highly effective resistance. Simple sequence repeats (SSRs are widely used as molecular markers in genetic studies to determine population structure in many organisms. However, only a small number of SSR markers have been developed for Pst. In this study, a total of 4,792 SSR loci were identified using the whole genome sequences of six isolates from different regions of the world, with a marker density of one SSR per 22.95 kb. The majority of the SSRs were di- and tri-nucleotide repeats. A database containing 1,113 SSR markers were established. Through in silico comparison, the previously reported SSR markers were found mainly in exons, whereas the SSR markers in the database were mostly in intergenic regions. Furthermore, 105 polymorphic SSR markers were confirmed in silico by their identical positions and nucleotide variations with INDELs identified among the six isolates. When 104 in silico polymorphic SSR markers were used to genotype 21 Pst isolates, 84 produced the target bands, and 82 of them were polymorphic and revealed the genetic relationships among the isolates. The results show that whole genome re-sequencing of multiple isolates provides an ideal resource for developing SSR markers, and the newly developed SSR markers are useful for genetic and population studies of the wheat stripe rust fungus.

  3. Detection of Puccinia kuehnii causing sugarcane orange rust with a loop-mediated isothermal amplification-based assay

    Science.gov (United States)

    Puccinia kuehnii is a fungal pathogen that causes orange rust in sugarcane, which is now prevalent in many countries including Florida and Louisiana in the U.S. At the early stage of the disease, it is almost indistinguishable from brown rust, which is caused by another species of Puccinia, viz., P...

  4. First report of Phakopsora pachyrhizi causing rust on soybean in Malawi

    Science.gov (United States)

    Soybean rust (SBR), caused by Phakopsora pachyrhizi, has rapidly become established in Africa since the first report in Uganda in 1996. The urediniospores, as windborne propagules, have infested new regions of Africa, initiating SBR in many countries, including Ghana and Democratic Republic of the C...

  5. First Report of Orange Rust of Sugarcane caused by Puccinia kuehnii in Ecuador

    Science.gov (United States)

    Orange rust, Puccinia kuehnii (W. Krüger) E.J. Butler, is an important disease of sugarcane (complex hybrid of Saccharum L. species) that causes yield losses, and impacts breeding programs. Initially confined to the Asia-Oceania region (5), P. kuehnii was reported in Florida in June 2007 (2) and lat...

  6. A new early-warning system for stripe rust affecting wheat and triticale: Host-pathogen interactions under different environmental conditions

    DEFF Research Database (Denmark)

    Rodriguez Algaba, Julian; Justesen, Annemarie Fejer; Hovmøller, Mogens Støvring

    Stripe (yellow) rust has been the most damaging disease in Danish organic wheat and triticale production since 2009. There were estimated losses of approximately 50 million DKK (9 million USD) in 2009. Until that time, triticale was considered the most robust cereal crop for organic farming....... The sudden change was explained by the appearance of an exotic and aggressive Pst race that attacked most of the triticale varieties grown at that time, resulting in yield losses of 50-100% for organic farmers. At present, Tulus is the most widely grown triticale variety in Denmark. Although originally....... In order to investigate this sudden ‘susceptibility’ of wheat/triticale two main tasks will be carried out to: 1) study the influence of environmental factors on changes in response of wheat and triticale varieties, and 2) investigate the influence of pathogen genetic background on changes in virulence...

  7. Stripe rust resistance and dough quality of new wheat - Dasypyrum villosum translocation lines T1DL•1V#3S and T1DS•1V#3L and the location of HMW-GS genes.

    Science.gov (United States)

    Zhao, W C; Gao, X; Dong, J; Zhao, Z J; Chen, Q G; Chen, L G; Shi, Y G; Li, X Y

    2015-07-17

    The transfer of agronomically useful genes from wild wheat species into cultivated wheat is one of the most effective approaches to improvement of wheat varieties. To evaluate the transfer of genes from Dasypyrum villosum into Triticum aestivum, wheat quality and disease resistance was evaluated in two new translocation lines, T1DL•1V#3S and T1DS•1V#3L. We examined the levels of stripe rust resistance and dough quality in the two lines, and identified and located the stripe rust resistant genes and high molecular weight glutenin subunit (HMW-GS) genes Glu-V1 of D. villosum. Compared to the Chinese Spring (CS) variety, T1DL•1V#3S plants showed moderate resistance to moderate susceptibility to the stripe rust races CYR33 and Su11-4. However, T1DS•1V#3L plants showed high resistance or immunity to these stripe rusts. The genes for resistance to stripe rust were located on 1VL of D. villosum. In comparison to CS, the dough from T1DS•1V#3L had a significantly shorter developing time (1.45 min) and stable time (1.0 min), a higher weakness in gluten strength (208.5 FU), and a lower farinograph quality index (18). T1DL•1V#3S had a significantly longer developing time (4.2 min) and stable time (5.25 min), a lower weakness in gluten strength (53 FU) and a higher farinograph quality index (78.5). We also found that T1DS•1V#3L had reduced gluten strength and dough quality compared to CS, but T1DL•1V#3S had increased gluten strength and dough quality. The results of SDS-PAGE analysis indicated that Glu-V1 of D. villosum was located on short arm 1VS and long arm 1VL. These results prove that the new translocation lines, T1DS•1V#3L and T1DS•1V#3L, have valuable stripe rust resistance and dough quality traits that will be important for improving wheat quality and resistance in future wheat breeding programs.

  8. Wheat Production and Wheat Rust Management in Canada

    Institute of Scientific and Technical Information of China (English)

    Xue Allen G; Chi Dawn T; Zhang Shu-zhen; Li Zuo-fu

    2012-01-01

    Wheat is Canada's the largest crop with most of the production in the western Canadian Prairie Provinces of Manitoba, Saskatchewan and Alberta. There were approximately 10 million (M) hectares (hm2) seeded to wheat in Canada, including 7 M hm2 of hexaploid spring wheat (Triticum aestivum L.), 2 M hm2 of durum wheat (T. turgidum L. ssp. durum (Desf.) Husn.), and 1 M hm2 of winter wheat (T. aestivum). Within hexaploid wheat there has been diversification into a number of market classes based on different end-use quality criteria. The predominant spring bread wheat class has been the Canada Western Red Spring (CWRS) class. Historically, the disease of major concern in wheat was stem rust, caused by Puccinia graminis f. sp. tritici. The first significant stem rust resistant cultivar in Canada was Thatcher, grown extensively from 1939 until the early 1970s. Thatcher, however, was very susceptible to leaf rust, caused by Puccinia triticina. Over years, improved resistance to both stem and leaf rust was achieved with the release of cultivars with additional genes for resistance, primarily Sr2, Sr6, Sr7a, Sr9b, Lr13, Lr14a, Lr16, and Lr34. The genetic resistance has adequately controlled stem rust but leaf rust continues to cause significant loss, partially due to changes in the P. triticina population which reduced the effectiveness of resistance genes such as Lr13 and Lr16. Stripe rust on wheat, caused by Puccinia striiformis f. sp. tritici, was historically a problem under irrigation in southern Alberta, but since 2000, it has been found annually in the central Canadian prairies and southern Ontario. The genetic basis of resistance to stripe rust in most Canadian wheat cultivars has not been determined, although Yr18 provides partial resistance in many cultivars. In the future, other rust diseases, such as wheat stripe rust, or highly virulent new pathotypes of current rust pathogens, such as P. graminis f. sp. tritici race Ug-99, may pose

  9. Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust.

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    Dario Cantu

    Full Text Available BACKGROUND: The wheat stripe rust fungus (Puccinia striiformis f. sp. tritici, PST is responsible for significant yield losses in wheat production worldwide. In spite of its economic importance, the PST genomic sequence is not currently available. Fortunately Next Generation Sequencing (NGS has radically improved sequencing speed and efficiency with a great reduction in costs compared to traditional sequencing technologies. We used Illumina sequencing to rapidly access the genomic sequence of the highly virulent PST race 130 (PST-130. METHODOLOGY/PRINCIPAL FINDINGS: We obtained nearly 80 million high quality paired-end reads (>50x coverage that were assembled into 29,178 contigs (64.8 Mb, which provide an estimated coverage of at least 88% of the PST genes and are available through GenBank. Extensive micro-synteny with the Puccinia graminis f. sp. tritici (PGTG genome and high sequence similarity with annotated PGTG genes support the quality of the PST-130 contigs. We characterized the transposable elements present in the PST-130 contigs and using an ab initio gene prediction program we identified and tentatively annotated 22,815 putative coding sequences. We provide examples on the use of comparative approaches to improve gene annotation for both PST and PGTG and to identify candidate effectors. Finally, the assembled contigs provided an inventory of PST repetitive elements, which were annotated and deposited in Repbase. CONCLUSIONS/SIGNIFICANCE: The assembly of the PST-130 genome and the predicted proteins provide useful resources to rapidly identify and clone PST genes and their regulatory regions. Although the automatic gene prediction has limitations, we show that a comparative genomics approach using multiple rust species can greatly improve the quality of gene annotation in these species. The PST-130 sequence will also be useful for comparative studies within PST as more races are sequenced. This study illustrates the power of NGS for

  10. Aster albescens Rust Caused by Aecidium asterum and Its Hyperparasitic Fungus Tuberculina persicina

    Institute of Scientific and Technical Information of China (English)

    HUANG Yun; YE Hua-zhi; CHEN Guang-yan; LIU Zi-ying; DONG Bao-chen

    2005-01-01

    Aster albescens is a medicinal plant. The rust caused by Aecidium asterum is a new record in China and an important disease of A. albescens in Feng Tong-zhai national reservation area. The percentages of diseased plant and the diseased leaf reach 100 and 28% respectively when the disease is serious. The disease results in leaf spot and leaf cast. Tuberculina persicina is a natural hyperparasite of A. asterum and is firstly reported in the world. The hyperparasite attacks aecium of A. asterum and hinderes the release of aeciospores. The symptom of the rust and the morphological characteristics of A.asterum is reported. The hyperparasitism of A. asterum and the morphological characteristics of the Tuberculina persicina are also reported.

  11. Genetic Analysis and Molecular Mapping of an All-Stage Stripe Rust Resistance Gene inTriticum aestivum-Haynaldia villosa Translocation Line V3

    Institute of Scientific and Technical Information of China (English)

    HOU Lu; MA Dong-fang; HU Mao-lin; HE Miao-miao; LU Yan; JING Jin-xue

    2013-01-01

    chromosomal location, the reaction patterns and pedigree analysis,YrV3should be a novel gene for resistance to stripe rust in wheat. These closely linked markers should be useful in stacking genes from different sources for wheat breeding and diversiifcation of resistance genes against stripe rust.

  12. 云南咖啡抗锈品种抗锈性丧失原因及防治对策%Cause and Preventive Countermeasures for Breakdown of Resistance to Rust in Rust Resistance Coffee Cultivars in Yunnan

    Institute of Scientific and Technical Information of China (English)

    张洪波; 白学慧; 李锦红; 李文伟; 周华; 胡永亮

    2011-01-01

    According to the occurrence of rust disease in rust resistance coffee cultivars in different growing areas in Yunnan and combined with distribution of races of rust disease in China, investigations and studies on cause for breakdown of resistance to rust in fields are carried out. Results show that interactions between host, pathogen and environment make physiological races of rust resistance coffee cultivars mutation constantly and disability. Study on persistent selection of rust resistance coffee cultivars as well as the importance of rational allocation on persistent of rust resistance of coffee cultivars are described. Measurements to control rust disease are put forward.%针对云南咖啡抗锈品种不同植区出现锈病,结合国内锈病小种分布情况,开展了咖啡大田抗锈性丧失原因的调查研究,结果表明:寄主一病原菌一环境的相互作用,使咖啡锈病生理小种不断变异,导致抗锈性丧失,阐述了持久抗锈品种选育研究和合理配置对咖啡品种抗锈持久的重要性,提出了防治锈病的措施。

  13. First Report of Leaf Rust Caused by Puccinia caricis in Farfugium japonicum in Korea.

    Science.gov (United States)

    Yun, Yeo Hong; Kwon, Hyuk Woo; Ahn, Hong Seok; Kim, Seong Hwan

    2015-09-01

    Farfugium japonicum is used in traditional medicine and as an edible herb in China and Korea. In July 2013, leaf spots were observed in F. japonicum seedlings at Ulleung Island, Gyeongsangbuk Province, Korea. Early symptoms on the leaf adaxial surface included roughly circular yellow spots that later developed brown, necrotic centers. The aecia were hypophyllous, cupulate, yellowish, 180~430 µm in diameter, clustered, and erumpent with a peridium with a recurved margin. The aeciospores were globoid, 14~17 × 13~16 µm, light yellow or colorless, and densely verrucose. The 28S rDNA sequence of the isolate was identical to each other and shared 99% identity with Puccinia caricis. This is the first report of rust caused by P. caricis in F. japonicum in Korea or elsewhere in the world.

  14. Agro-climatic Risk Zoning of Wheat Stripe Rust in Spring of Sichuan Province%四川省小麦条锈病春季流行的农业气候风险区划

    Institute of Scientific and Technical Information of China (English)

    游超; 肖天贵; 李金建; 张菡

    2012-01-01

    From the perspective of risk zoning, there was little research on the relationship between wheat stripe rust and meteorological condition method during the past years. Based on the theory of agrometeorological disaster risk, this paper developed the agricultural climate risk model to study wheat stripe rust of Sichuan Province in spring with the help of correlation analysis, AHP and range normalization methods. Coinstantaneously, the model included two environmental factors such as climate condition and the number of host plants. Then the risk index was divided into high, medium and low-grades clearly by using the model. After all, with GIS technology, the spring risk zoning of wheat stripe rust in Sichuan Province was carried out. Finally, t he result showed that, the western Sichuan Plateau, as well as the mountainous area of southwest Sichuan and the southwest basin region belonged to the low risk area. Meanwhile, the high and medium area included the the most of Sichuan basin where the wheat stripe rust happened frequently in spring. This paper supplied theoretical basis for the forecast in subarea and integrated control of wheat stripe rust in Sichuan Province. Based on the conclusion which showed that the risk assessment coincided with the actual situation generally, better services for decision-making to disease pests prevention and reduction could be provided.%针对当前从气象风险角度开展小麦条锈病与气象关系研究甚少的状况,从农业气象灾害风险分析理论出发,采用相关分析、层次分析和极差正规化等方法,建立了包含气候条件和寄主存在数量两个环境因子的四川省小麦条锈病春季流行农业气候风险模型,并划分了高、中、低风险等级的指标.在此基础上,利用GIS技术对四川省小麦条锈病春季流行的农业气候风险进行了区划.结果表明,四川省的川西高原地区、川西南山地和盆地西南部是小麦条锈病春季流行低风险区,

  15. Real-time PCR detection of Puccinia chrysanthemi causing brown rust of chrysanthemum

    Science.gov (United States)

    Fungi responsible for rust diseases are among the most challenging organisms to identify, as many identification keys are based on host identity. In the U.S., numerous rust fungi are quarantine-significant plant pathogens. As such, accurate identification is crucial to prevent the inadvertent introd...

  16. A new rust disease on wild coffee (Psychotria nervosa) caused by Puccinia mysuruensis sp. nov

    Science.gov (United States)

    Psychotria nervosa, commonly called wild coffee (Rubiaceae) is an important ethno-medicinal plant in India. In 2010 a new rust disease of P. nervosa was observed in three regions of Mysore District, Karnataka (India) with disease incidence ranging from 58% to 63%. Typical symptoms of rust disease we...

  17. Development and Molecular Cytogenetic Identification of a Novel Wheat-Leymus mollis Lm#7Ns (7D Disomic Substitution Line with Stripe Rust Resistance.

    Directory of Open Access Journals (Sweden)

    Xiaofei Yang

    Full Text Available Leymus mollis (2n = 4x = 28, NsNsXmXm possesses novel and important genes for resistance against multi-fungal diseases. The development of new wheat-L. mollis introgression lines is of great significance for wheat disease resistance breeding. M11003-3-1-15-8, a novel disomic substitution line of common wheat cv. 7182 -L. mollis, developed and selected from the BC1F5 progeny between wheat cv. 7182 and octoploid Tritileymus M47 (2n = 8x = 56, AABBDDNsNs, was characterized by morphological and cytogenetic identification, analysis of functional molecular markers, genomic in situ hybridization (GISH, sequential fluorescence in situ hybridization (FISH-genomic in situ hybridization (GISH and disease resistance evaluation. Cytological observations suggested that M11003-3-1-15-8 contained 42 chromosomes and formed 21 bivalents at meiotic metaphase I. The GISH investigations showed that line contained 40 wheat chromosomes and a pair of L. mollis chromosomes. EST-STS multiple loci markers and PLUG (PCR-based Landmark Unique Gene markers confirmed that the introduced L. mollis chromosomes belonged to homoeologous group 7, it was designated as Lm#7Ns. While nulli-tetrasomic and sequential FISH-GISH analysis using the oligonucleotide Oligo-pSc119.2 and Oligo-pTa535 as probes revealed that the wheat 7D chromosomes were absent in M11003-3-1-15-8. Therefore, it was deduced that M11003-3-1-15-8 was a wheat-L. mollis Lm#7Ns (7D disomic substitution line. Field disease resistance demonstrated that the introduced L. mollis chromosomes Lm#7Ns were responsible for the stripe rust resistance at the adult stage. Moreover, M11003-3-1-15-8 had a superior numbers of florets. The novel disomic substitution line M11003-3-1-15-8, could be exploited as an important genetic material in wheat resistance breeding programs and genetic resources.

  18. The genome sequence and effector complement of the flax rust pathogen Melampsora lini

    Science.gov (United States)

    Nemri, Adnane; Saunders, Diane G. O.; Anderson, Claire; Upadhyaya, Narayana M.; Win, Joe; Lawrence, Gregory J.; Jones, David A.; Kamoun, Sophien; Ellis, Jeffrey G.; Dodds, Peter N.

    2014-01-01

    Rust fungi cause serious yield reductions on crops, including wheat, barley, soybean, coffee, and represent real threats to global food security. Of these fungi, the flax rust pathogen Melampsora lini has been developed most extensively over the past 80 years as a model to understand the molecular mechanisms that underpin pathogenesis. During infection, M. lini secretes virulence effectors to promote disease. The number of these effectors, their function and their degree of conservation across rust fungal species is unknown. To assess this, we sequenced and assembled de novo the genome of M. lini isolate CH5 into 21,130 scaffolds spanning 189 Mbp (scaffold N50 of 31 kbp). Global analysis of the DNA sequence revealed that repetitive elements, primarily retrotransposons, make up at least 45% of the genome. Using ab initio predictions, transcriptome data and homology searches, we identified 16,271 putative protein-coding genes. An analysis pipeline was then implemented to predict the effector complement of M. lini and compare it to that of the poplar rust, wheat stem rust and wheat stripe rust pathogens to identify conserved and species-specific effector candidates. Previous knowledge of four cloned M. lini avirulence effector proteins and two basidiomycete effectors was used to optimize parameters of the effector prediction pipeline. Markov clustering based on sequence similarity was performed to group effector candidates from all four rust pathogens. Clusters containing at least one member from M. lini were further analyzed and prioritized based on features including expression in isolated haustoria and infected leaf tissue and conservation across rust species. Herein, we describe 200 of 940 clusters that ranked highest on our priority list, representing 725 flax rust candidate effectors. Our findings on this important model rust species provide insight into how effectors of rust fungi are conserved across species and how they may act to promote infection on their

  19. The genome sequence and effector complement of the flax rust pathogen Melampsora lini

    Directory of Open Access Journals (Sweden)

    Adnane eNemri

    2014-03-01

    Full Text Available Rust fungi cause serious yield reductions on crops, including wheat, barley, soybean, coffee, and represent real threats to global food security. Of these fungi, the flax rust pathogen Melampsora lini has been developed extensively over the past 80 years as a model to understand the molecular mechanisms that underpin pathogenesis. During infection, M. lini secretes virulence effectors to promote disease. The number of these effectors, their function and their degree of conservation across rust fungal species is unknown. To assess this, we sequenced and assembled de novo the genome of M. lini isolate CH5 into 21,130 scaffolds spanning 189 Mbp (scaffold N50 of 31 kbp. Global analysis of the DNA sequence revealed that repetitive elements, primarily retrotransposons, make up at least 45% of the genome. Using ab initio predictions, transcriptome data and homology searches, we identified 16,271 putative protein-coding genes. An analysis pipeline was then implemented to predict the effector complement of M. lini and compare it to that of the poplar rust, wheat stem rust and wheat stripe rust pathogens to identify conserved and species-specific effector candidates. Previous knowledge of four cloned M. lini avirulence effector proteins and two basidiomycete effectors was used to optimise parameters of the effector prediction pipeline. Markov clustering based on sequence similarity was performed to group effector candidates from all four rust pathogens. Clusters containing at least one member from M. lini were further analysed and prioritized based on features including expression in isolated haustoria and infected leaf tissue and conservation across rust species. Herein, we describe 200 of 940 clusters that ranked highest on our priority list, representing 725 flax rust candidate effectors. Our findings on this important model rust species provide insight into how effectors of rust fungi are conserved across species and how they may act to promote

  20. Inheritances of Resistance to Powdery Mildew and Stripe Rust in Cryptic Alien Introgression from Thinopyrum intermedium%小偃麦渐渗系对白粉病和条锈病抗性的遗传分析

    Institute of Scientific and Technical Information of China (English)

    詹海仙; 李光蓉; 张晓军; 李欣; 畅志坚

    2012-01-01

    CH5382 is a stable cryptic alien introgression carrying resistance genes of Thinopyrum intermedium. It was highly resistant to both powdery mildew and stripe rust disease. To determine the resistance inheritances in it, CH5382 was crossed with three susceptible cultivars (line ). The adult tests of F1 , F2 and F3 progenies from these crosses and their parents were inoculated with Egt isolate E09 in Taiyuan greenhouse and with mixed Pst isolates including CYR32 at Sichuan disease nursery Respectively. It was consistent to both powdery mildew (IT0) and stripe rust (IT 0; ) for F, plants and their resistant parent CH5382 indicating complete dominance of the two resistances in these crosses. Powdery mildew resistant and susceptible segregation ratios satisfactorily fit 3R: 1S in the F2 populations and segregation ratios for stripe rust reaction of F2 progenies from these crosses suit 3R: 1S. The F2.3 lines displayed a segregation ratio of 1 (all R): 2 segregating: 1 (all S) ,demonstrating that the powdery mildew resistance and stripe rust resistance in CH5382 were conferred by a single dominant gene separately.%CH5382是一个携带中间偃麦草抗性基因的隐形异源渐渗系,它兼抗白粉病和条锈病.为明确其抗性的遗传规律,用高感品种绵阳11、台长29和SY95-71杂交,将其F1、F2、F3家系及其亲本分别在太原温室(用白粉病E09菌系接种)和四川成都电子科技大学农场(用条锈病菌CYR32接种)进行了抗性基因的遗传分析.结果表明,F1对2种病害的抗性分别为免疫(0级),近免疫(0;级);F2分离群体中,白粉病抗感分离比例符合3R:1S;条锈病的抗感分离比例也符合3R:1S;F3家系的抗感分离比例均符合1R:2Seg:1S的理论比例.说明小偃麦渐渗系CH5382对白粉病和条锈病的抗性均受1对显性基因控制.

  1. Efficacy of plant extracts in controlling wheat leaf rust disease caused by Puccinia triticina

    Directory of Open Access Journals (Sweden)

    Yasser M. Shabana

    2017-03-01

    Full Text Available The efficacy of eight plant extracts (garlic, clove, garden quinine, Brazilian pepper, anthi mandhaari, black cumin, white cedar and neem in controlling leaf rust disease of wheat was investigated in vitro and in vivo. In vitro, all treatments inhibited spore germination by more than 93%. Neem extract recorded 98.99% inhibition of spore germination with no significant difference from the fungicide Sumi-8 (100%. Under greenhouse conditions, seed soaking application in neem extract (at concentration of 2 ml/L resulted in 36.82% reduction in the number of pustules/leaf compared with the untreated control. Foliar spraying of plant extracts on wheat seedlings decreased the number of pustules/leaf. Foliar spraying of plant extracts four days after inoculation led to the highest resistance response of wheat plants against leaf rust pathogen. Spray application of wheat seedlings with neem, clove and garden quinine extracts, four days after inoculation with leaf rust pathogen completely prevented rust development (100% disease control and was comparable with the fungicide Sumi-8. Foliar spray application of wheat plants at mature stage with all plant extracts has significantly reduced the leaf rust infection (average coefficient of infection, ACI compared with the untreated control and neem was the most effective treatment. This was reflected on grain yield components, whereas the 1000-kernel weight and the test weight were improved whether under one- or two-spray applications, with two-spray application being more effective in this regard. Thus, it could be concluded that plant extracts may be useful to control leaf rust disease in Egypt as a safe alternative option to chemical fungicides.

  2. First Report of Garlic Rust Caused by Puccinia allii on Allium sativum in Minnesota

    Science.gov (United States)

    In July 2010, Allium sativum, cultivar German Extra Hardy Porcelain plants showing foliar symptoms typical of rust infection were brought to the Plant Disease Clinic at the University of Minnesota by a commercial grower from Fillmore county Minnesota. Infected leaves showed circular to oblong lesio...

  3. A preliminary survey of over-summering stripe rust and the resistant variety of wheat cultivars in middle Gansu%甘肃中部麦区小麦条锈病菌越夏调查及品种抗性变异监测结果初报

    Institute of Scientific and Technical Information of China (English)

    曹世勤; 金明安; 张勃; 黄瑾; 金社林; 段霞瑜; 骆惠生; 刘太国; 陈万权; 李辉; 蒲崇建; 贾秋珍

    2011-01-01

    The over-summering of wheat stripe rust caused by Puccinia striiformis f.sp.tritici in the middle region of Gansu Province was surveyed during 2007-2009.The results showed that the pathogen could over-summer on the volunteer seedlings at the altitude of 1 718-2 350 m in the middle region of Gansu, especially Dingxi and Linxia.The percentage of the diseased field and diseased leaves were 63.0% - 80.0% and 1.05% - 5.80%,respectively, more than that in South of Gansu.Over-summering urediniospores of P.striiformis f.sp.tritici on the volunteer seedlings could spread in the autumn-sown wheat in the local areas, and were the most important primary infection sources.The stripe rust severity on autumn-sown seedlings in the middle regions was greater than that in southern Gansu, which was consistent with the results of over-summering surveys.Thirty-four wheat cultivars or lines displayed similar resistance to stripe rust in both of the above-mentioned regions in 2008 and 2009.It suggested that the middle regions of Gansu have become parts of the major over-summer areas.The probable impacts of over-summering pathogens in the wide winter wheat areas were discussed.%2007-2009年,对甘肃省中部麦区小麦条锈病越夏情况进行调查,结果发现:条锈病菌在定西、临夏等中部麦区海拔1718~2350m地带自生麦苗上可顺利越夏,病田率和病叶率分别为63.0%~80.0%和1.05%~5.80%,其越夏菌源量比陇南更大,是当地秋苗发病的初侵染源;秋苗病情调查结果表明,中部麦区秋苗病田率和病叶率均高于同期陇南麦区;品种抗性监测结果发现,34个供试品种(系)在中部麦区和陇南麦区的抗条锈性表现基本一致,部分品种发病程度重于陇南麦区.表明甘肃省定西、临夏等中部麦区已成为陇南小麦条锈病越夏区的重要组成部分.文中还对中部麦区越夏菌源的影响、作用及品种抗性变异因素等进行了讨论.

  4. TaNAC1 acts as a negative regulator of stripe rust resistance in wheat, enhances susceptibility to Pseudomonas syringae, and promotes lateral root development in transgenic Arabidopsis thaliana.

    Science.gov (United States)

    Wang, Fengtao; Lin, Ruiming; Feng, Jing; Chen, Wanquan; Qiu, Dewen; Xu, Shichang

    2015-01-01

    Plant-specific NAC transcription factors (TFs) constitute a large family and play important roles in regulating plant developmental processes and responses to environmental stresses, but only some of them have been investigated for effects on disease reaction in cereal crops. Virus-induced gene silencing (VIGS) is an effective strategy for rapid functional analysis of genes in plant tissues. In this study, TaNAC1, encoding a new member of the NAC1 subgroup, was cloned from bread wheat and characterized. It is a TF localized in the cell nucleus, and contains an activation domain in its C-terminal. TaNAC1 was strongly expressed in wheat roots and was involved in responses to infection by the obligate pathogen Puccinia striiformis f. sp. tritici and defense-related hormone treatments such as salicylic acid (SA), methyl jasmonate, and ethylene. Knockdown of TaNAC1 with barley stripe mosaic virus-induced gene silencing (BSMV-VIGS) enhanced stripe rust resistance. TaNAC1-overexpression in Arabidopsis thaliana plants gave enhanced susceptibility, attenuated systemic-acquired resistance to Pseudomonas syringae DC3000, and promoted lateral root development. Jasmonic acid-signaling pathway genes PDF1.2 and ORA59 were constitutively expressed in transgenic plants. TaNAC1 overexpression suppressed the expression levels of resistance-related genes PR1 and PR2 involved in SA signaling and AtWRKY70, which functions as a connection node between the JA- and SA-signaling pathways. Collectively, TaNAC1 is a novel NAC member of the NAC1 subgroup, negatively regulates plant disease resistance, and may modulate plant JA- and SA-signaling defense cascades.

  5. TaNAC1 acts as a negative regulator of stripe rust resistance in wheat, enhances susceptibility to Pseudomonas syringae, and promotes lateral root development in transgenic Arabidopsis thaliana

    Directory of Open Access Journals (Sweden)

    Fengtao eWang

    2015-02-01

    Full Text Available Plant-specific NAC transcription factors constitute a large family and play important roles in regulating plant developmental processes and responses to environmental stresses, but only some of them have been investigated for effects on disease reaction in cereal crops. Virus-induced gene silencing (VIGS is an effective strategy for rapid functional analysis of genes in plant tissues. In this study, TaNAC1, encoding a new member of the NAC1 subgroup, was cloned from bread wheat and characterized. It is a transcription factor localized in the cell nucleus, and contains an activation domain in its C-terminal. TaNAC1 was strongly expressed in wheat roots and was involved in responses to infection by the obligate pathogen Puccinia striiformis f. sp. tritici and defense-related hormone treatments such as salicylic acid, methyl jasmonate and ethylene. Knockdown of TaNAC1 with barley stripe mosaic virus-induced gene silencing (BSMV-VIGS enhanced stripe rust resistance. TaNAC1-overexpression in Arabidopsis plants gave enhanced susceptibility, attenuated systemic-acquired resistance to Pseudomonas syringae DC3000, and promoted lateral root development. Jasmonic acid-signaling pathway genes PDF1.2 and ORA59 were constitutively expressed in transgenic plants. TaNAC1 overexpression suppressed the expression levels of resistance-related genes PR1 and PR2 involved in SA signaling and AtWRKY70, which functions as a connection node between the JA- and SA-signaling pathways. Collectively, TaNAC1 is a novel NAC member of the NAC1 subgroup, negatively regulates plant disease resistance, and may modulate plant JA- and SA-signaling defense cascades.

  6. Glyphosate inhibits rust diseases in glyphosate-resistant wheat and soybean

    OpenAIRE

    Feng, Paul C. C.; Baley, G. James; Clinton, William P.; Bunkers, Greg J.; Alibhai, Murtaza F.; Paulitz, Timothy C.; Kidwell, Kimberlee K.

    2005-01-01

    Glyphosate is a broad-spectrum herbicide used for the control of weeds in glyphosate-resistant crops. Glyphosate inhibits 5-enolpyruvyl shikimate 3-phosphate synthase, a key enzyme in the synthesis of aromatic amino acids in plants, fungi, and bacteria. Studies with glyphosate-resistant wheat have shown that glyphosate provided both preventive and curative activities against Puccinia striiformis f. sp. tritici and Puccinia triticina, which cause stripe and leaf rusts, respectively, in wheat. ...

  7. 小偃麦新种质CH7102抗条锈病特性的遗传分析%Inheritance of Stripe Rust Resistance in Thinopyrum ponticum-derived Wheat Introgression Line CH7102

    Institute of Scientific and Technical Information of China (English)

    刘洁; 畅志坚; 李欣; 张晓军; 詹海仙; 郭慧娟

    2013-01-01

    This study aimed at determining the response to Chinese stripe rust races, the origin and inheritance mode of resistance gene in a new Thinopyrum ponticum-derived wheat introgression line CH7102. Seedlings of Th. ponticum (accession R431), CH7102 and its resistant parent partial amphiploid 'Xiaoyan 7430' as well as all wheat parents were evaluated in the greenhouse using CYR31 and CYR32, the most widely virulent and predominant pathotypes in China. CH7102 was crossed respectively to susceptible cultivars 'Taichung 29' and ' Mianyang 11' and the lines containing known resistance genes, and the resulting segregating populations F2, F3 and BCi were used for genetic analysis of stripe rust response and allelism tests of resistance gene in CH7102. When inoculated with race CYR32 at the adult plant stage, F, plants from both crosses showed infection types (IT) similar to the resistant parent, indicating that resistance was dominant. The segregation ratios in the F2 and BCi populations and F3 lines were consistent with those expected for segregation at a single locus. When tested with the same race at the seedling stage, the segregation for resistant and susceptible showed a good fit with a 15:1 ratio in all F2 populations from crossing CH7102 with five lines containing known resistance genes. The stripe rust resistance in wheat-alien introgression line CH7102 was controlled by a single dominant gene, presumably having been transferred from T. ponticum. Based on the result from allelism tests, the resistance gene in CH7102 was different from the known effective resistance genes Yr5, YrlO, Yrl5 Yr24l Yr26 and Yr41, and is possibly a new gene for resistance to stripe rust.%对衍生于普通小麦与八倍体小偃麦‘小偃7430’杂种后代的抗条锈病新种质CH7102进行抗性鉴定和遗传分析,明确其抗性来源及其遗传方式.采用条锈菌流行小种CYR31、CYR32对CH7102及其亲本进行苗期抗性评价;对CH7102分别与感病品种和已知

  8. Rust essentials

    CERN Document Server

    Balbaert, Ivo

    2015-01-01

    This book is intended for software developers interested in systems level and application programming, and are looking for a quick entry into using Rust and understanding the core features of the framework. It is assumed that you have a basic understanding of Java, C#, Ruby, Python or JavaScript.

  9. First report of Puccinia psidii caused rust-disease epiphytotic on the invasive shrub Rhodomyrtus tomentosa in Florida

    Science.gov (United States)

    Rhodomyrtus tomentosa (Aiton) Hassk. (downy-rose myrtle, Family: Myrtaceae) of south Asian origin is an invasive shrub that has formed monotypic stands in Florida. During the winter and spring of 2010-2012, a rust disease of epiphytotic proportion was observed on young foliage, stem terminals and i...

  10. Primeira ocorrência de ferrugem em capim-limão causada por Puccinia cymbopogonis no Brasil First report of the lemongrass rust fungi caused by Puccinia cymbopogonis in Brazil

    Directory of Open Access Journals (Sweden)

    João Batista Vida

    2006-03-01

    Full Text Available È registrada a primeira ocorrência de ferrugem em capim-limão (Cymbopogon citratus (DC. Stapf, causada por Puccinia cymbopogonis Mass., no Brasil, Estado do Paraná.It is reported the first occurrence of the lemongrass (Cymbopogon citratus (DC. Stapf rust fungi caused by Puccinia cymbopogonis Mass. in Brazil, State of Paraná.

  11. 受条锈菌诱导的小麦丝氨酸苏氨酸激酶基因 TaS/TK的克隆与表达%Cloning and expression analysis of a Serine/Threonine protein kinase gene TaS/TK in wheat in response to stripe rust fungal infection

    Institute of Scientific and Technical Information of China (English)

    蒋正宁; 别同德; 赵仁惠; 高德荣; 吴旭江; 张伯桥

    2016-01-01

    以小麦基因芯片数据获得的1个受条锈病菌诱导上调表达的EST序列为探针,从小麦中克隆抗条锈病相关基因TaS/TK,并对其序列特征、进化关系和表达特征进行分析。结果表明:TaS/TK 基因 cDNA 全长为1582 bp,包含1239 bp的ORF、139 bp的5′UTR以及240 bp的3′UTR,编码412个氨基酸,分子量47120,等电点为5�84,并将其定位于小麦5B染色体;SMART软件分析结果表明TaS/TK仅存在1个典型的丝氨酸/苏氨酸蛋白激酶结构域;经激酶区Blastp比对分析,TaS/TK与其他植物同源性较低,与同源性最高的短柄草仅为59%;qRT⁃PCR检测结果显示,TaS/TK在小麦茎、叶中均有表达,但在根中低水平表达;TaS/TK在抗病小麦、感病小麦中均受条锈菌诱导表达,但在抗病材料中表达水平明显高于感病材料;同时,TaS/TK受水杨酸诱导上调表达。以上结果表明TaS/TK可能参与小麦SA信号通路中对条锈病菌的抗性反应。%In this study, using an up⁃regulated EST screened by gene chip as probe, a stripe rust resistance⁃related gene TaS/TK was cloned from wheat,and the gene sequence features, evolutionary relationships and expression characteris⁃tics were analyzed. The full⁃length cDNA sequence of TaS/TK is 1 582 bp in length, containing a 1 239⁃bp open reading frame( ORF) , a 139⁃bp 5′UTR and a 240⁃bp 3′UTR. TaS/TK was predicted to encode a protein of 412 amino acids with a molecular mass of 47 120 and an isoeletric point ( pI) of 5�84, and was located on chromosome 5B. SMART analysis re⁃vealed this putative protein ( TaS/TK) only possessed the activities of the serine/threonine kinase. Phylogenetic analysis showed that TaS/TK was lowly homologous to the orthologous genes from rice, maize and barley, and the highest similarity ( 59%) was to that from Brachypodium distachyon. Real time quantitative PCR exhibited low expression of TaS/TK in roots

  12. 平凉市小麦条锈病越冬菌源分布区域勘定及主要影响因子研究%Distribution area of overwintering pathogen source of wheat stripe rust and its main affecting factors in Pingliang

    Institute of Scientific and Technical Information of China (English)

    王新俊

    2014-01-01

    Through years of investigation,we confirmed that overwintering area of wheat stripe rust in Pingliang City was located in the wheat planting regions under altitude of 1 980 m and its main overwintering area distributed at altitude below 1 750 m.Based on comprehensive analysis of historical data for wheat stripe rust during 27 years,the main factors affecting the amount of overwintering pathogen were selected,including the occurrence degree on autumn seedlings of the year,total precipitation from November to February in winter,average temperature in January next year and days of snow covering before January 31 next year.Using multiple stepwise regression method,a prediction model for the local overwintering pathogens were set up,with back measurement accuracy of 72%.%通过多年调查研究,明确了甘肃省平凉市小麦条锈病菌越冬区域为海拔1980 m 以下的小麦种植区,主要越冬区域在海拔1750 m 以下;在对该市27年小麦条锈病历史资料系统分析的基础上,研究筛选出了当年秋苗发病程度、冬季11月-翌年2月降水总量、翌年1月份平均气温、翌年1月31日前积雪日数等小麦条锈病越冬菌量的主要影响因子,采用多元逐步回归方法组建了当地小麦条锈病越冬菌量预测模型,回测准确率为72%,对开展其综合治理有积极的指导作用。

  13. Leaf Rust of Wheat: Pathogen Biology, Variation and Host Resistance

    Directory of Open Access Journals (Sweden)

    James Kolmer

    2013-01-01

    Full Text Available Rusts are important pathogens of angiosperms and gymnosperms including cereal crops and forest trees. With respect to cereals, rust fungi are among the most important pathogens. Cereal rusts are heteroecious and macrocyclic requiring two taxonomically unrelated hosts to complete a five spore stage life cycle. Cereal rust fungi are highly variable for virulence and molecular polymorphism. Leaf rust, caused by Puccinia triticina is the most common rust of wheat on a worldwide basis. Many different races of P. triticina that vary for virulence to leaf rust resistance genes in wheat differential lines are found annually in the US. Molecular markers have been used to characterize rust populations in the US and worldwide. Highly virulent races of P. triticina are selected by leaf rust resistance genes in the soft red winter wheat, hard red winter wheat and hard red spring wheat cultivars that are grown in different regions of the US. Cultivars that only have race-specific leaf rust resistance genes that are effective in seedling plants lose their effective resistance and become susceptible within a few years of release. Cultivars with combinations of race non-specific resistance genes have remained resistant over a period of years even though races of the leaf rust population have changed constantly.

  14. Establishment and application of duplex real-time PCR quantitative determination method on latent infection of wheat stripe rust%双重real-time PCR定量测定小麦条锈菌潜伏侵染方法的建立与应用

    Institute of Scientific and Technical Information of China (English)

    潘阳; 谷医林; 骆勇; 马占鸿

    2016-01-01

    小麦条锈病是我国小麦生产上的重要病害之一.为高效准确地定量检测处于潜伏侵染阶段的小麦条锈菌,本研究根据已发表的小麦条锈菌和寄主小麦的引物,设计了各自的探针,建立了双重real-time PCR检测方法.为排除多个引物互作造成的干扰,对小麦条锈菌引物探针体系、小麦体系以及二者的双重real-time PCR体系进行了比较.CT值相关线性回归分析证明,引物之间互作很小,对定量检测无影响.已知浓度样品经梯度稀释,进行灵敏度检测,确定了双重real-time PCR对小麦条锈菌DNA和小麦DNA准确定量测定的最小检测限为0.4 pg和0.5 ng.同时建立了小麦条锈菌和小麦各自的标准曲线.用此方法检测来自两个不同地区的田间样本,得到的分子病情指数(MDI)与随后的发病趋势一致.本研究建立的双重real-time PCR分析方法可靠、高效、低误差,是对本实验室已有小麦条锈菌潜伏期分子检测方法的进一步优化.%Wheat stripe rust,caused by Puccinia striiformis f.sp.tritici (PST),is one of the most important wheat diseases in China.Based on two pairs of published primers (from PST and wheat respectively),we designed specific probes respectively and developed a duplex real-time PCR approach for the quantification of PST in latent period.In order to determine if the primers would interact in the duplex PCR system,and affect the system subsequently,we designed two real-time PCR reaction systems with a single pair of the primers and one probe from PST and wheat respectively for comparison.The linear regression analysis of CT values showed that duplex real-time PCR was hardly affected by the interaction of the primers.Serial ten-fold dilutions of samples to the determined concentration were performed for sensitivity test;the minimum genomic DNA concentrations of PST and wheat that could be accurately quantified were 0.4 pg and 0.5 ng respectively.In the mean time,two standard

  15. Did transmission of Helicobacter pylori from humans cause a disease outbreak in a colony of Stripe-faced Dunnarts (Sminthopsis macroura?

    Directory of Open Access Journals (Sweden)

    Every Alison L

    2011-02-01

    Full Text Available Abstract Since the discovery that Helicobacter pylori causes a range of pathologies in the stomachs of infected humans, it has become apparent that Helicobacters are found in a diverse range of animal species where they are frequently associated with disease. In 2003 and 2004, there were two outbreaks of increased mortality associated with gastric bleeding and weight-loss in a captive colony of the Australian marsupial, the Stripe-faced Dunnart (Sminthopsis macroura. The presence of gastric pathology led to an investigation of potential Helicobacter pathogenesis in these animals. Histological examination revealed the presence of gastritis, and PCR analysis confirmed the presence of Helicobacter infection in the stomachs of these marsupials. Surprisingly, sequencing of 16S rRNA from these bacteria identified the species as H. pylori and PCR confirmed the strain to be positive for the important pathogenesis factor, cagA. We therefore describe, for the first time, an apparent reverse zoonotic infection of Stripe-faced Dunnarts with H. pylori. Already prone to pathological effects of stress (as experienced during breeding season, concomitant H. pylori infection appears to be a possible essential but not sufficient co-factor in prototypic gastric bleeding and weight loss in these marsupials. The Stripe-faced Dunnart could represent a new model for investigating Helicobacter-driven gastric pathology. Infections from their human handlers, specifically of H. pylori, may be a potential risk to captive colonies of marsupials.

  16. The Big Rust and the Red Queen: Long-Term Perspectives on Coffee Rust Research.

    Science.gov (United States)

    McCook, Stuart; Vandermeer, John

    2015-09-01

    Since 2008, there has been a cluster of outbreaks of the coffee rust (Hemileia vastatrix) across the coffee-growing regions of the Americas, which have been collectively described as the Big Rust. These outbreaks have caused significant hardship to coffee producers and laborers. This essay situates the Big Rust in a broader historical context. Over the past two centuries, coffee farmers have had to deal with the "curse of the Red Queen"-the need to constantly innovate in the face of an increasing range of threats, which includes the rust. Over the 20th century, particularly after World War II, national governments and international organizations developed a network of national, regional, and international coffee research institutions. These public institutions played a vital role in helping coffee farmers manage the rust. Coffee farmers have pursued four major strategies for managing the rust: bioprospecting for resistant coffee plants, breeding resistant coffee plants, chemical control, and agroecological control. Currently, the main challenge for researchers is to develop rust control strategies that are both ecologically and economically viable for coffee farmers, in the context of a volatile, deregulated coffee industry and the emergent challenges of climate change.

  17. Gene discovery in EST sequences from the wheat leaf rust fungus Puccinia triticina sexual spores, asexual spores and haustoria, compared to other rust and corn smut fungi

    Directory of Open Access Journals (Sweden)

    Wynhoven Brian

    2011-03-01

    Full Text Available Abstract Background Rust fungi are biotrophic basidiomycete plant pathogens that cause major diseases on plants and trees world-wide, affecting agriculture and forestry. Their biotrophic nature precludes many established molecular genetic manipulations and lines of research. The generation of genomic resources for these microbes is leading to novel insights into biology such as interactions with the hosts and guiding directions for breakthrough research in plant pathology. Results To support gene discovery and gene model verification in the genome of the wheat leaf rust fungus, Puccinia triticina (Pt, we have generated Expressed Sequence Tags (ESTs by sampling several life cycle stages. We focused on several spore stages and isolated haustorial structures from infected wheat, generating 17,684 ESTs. We produced sequences from both the sexual (pycniospores, aeciospores and teliospores and asexual (germinated urediniospores stages of the life cycle. From pycniospores and aeciospores, produced by infecting the alternate host, meadow rue (Thalictrum speciosissimum, 4,869 and 1,292 reads were generated, respectively. We generated 3,703 ESTs from teliospores produced on the senescent primary wheat host. Finally, we generated 6,817 reads from haustoria isolated from infected wheat as well as 1,003 sequences from germinated urediniospores. Along with 25,558 previously generated ESTs, we compiled a database of 13,328 non-redundant sequences (4,506 singlets and 8,822 contigs. Fungal genes were predicted using the EST version of the self-training GeneMarkS algorithm. To refine the EST database, we compared EST sequences by BLASTN to a set of 454 pyrosequencing-generated contigs and Sanger BAC-end sequences derived both from the Pt genome, and to ESTs and genome reads from wheat. A collection of 6,308 fungal genes was identified and compared to sequences of the cereal rusts, Puccinia graminis f. sp. tritici (Pgt and stripe rust, P. striiformis f. sp

  18. Prospects for advancing defense to cereal rusts through genetical genomics.

    Science.gov (United States)

    Ballini, Elsa; Lauter, Nick; Wise, Roger

    2013-01-01

    Rusts are one of the most severe threats to cereal crops because new pathogen races emerge regularly, resulting in infestations that lead to large yield losses. In 1999, a new race of stem rust, Puccinia graminis f. sp. tritici (Pgt TTKSK or Ug99), was discovered in Uganda. Most of the wheat and barley cultivars grown currently worldwide are susceptible to this new race. Pgt TTKSK has already spread northward into Iran and will likely spread eastward throughout the Indian subcontinent in the near future. This scenario is not unique to stem rust; new races of leaf rust (Puccinia triticina) and stripe rust (Puccinia striiformis) have also emerged recently. One strategy for countering the persistent adaptability of these pathogens is to stack complete- and partial-resistance genes, which requires significant breeding efforts in order to reduce deleterious effects of linkage drag. These varied resistance combinations are typically more difficult for the pathogen to defeat, since they would be predicted to apply lower selection pressure. Genetical genomics or expression Quantitative Trait Locus (eQTL) analysis enables the identification of regulatory loci that control the expression of many to hundreds of genes. Integrated deployment of these technologies coupled with efficient phenotyping offers significant potential to elucidate the regulatory nodes in genetic networks that orchestrate host defense responses. The focus of this review will be to present advances in genetical genomic experimental designs and analysis, particularly as they apply to the prospects for discovering partial disease resistance alleles in cereals.

  19. Holographic Stripes

    CERN Document Server

    Rozali, Moshe; Sorkin, Evgeny; Stang, Jared B

    2012-01-01

    We construct inhomogeneous asymptotically AdS black hole solutions corresponding to the spontaneous breaking of translational invariance and the formation of striped order in the boundary field theory. We find that the system undergoes a weak first order phase transition in both the fixed density and fixed chemical potential ensembles. The bulk solutions have striking geometrical features related to a magnetoelectric effect associated with the existence of a near horizon topological insulator. At low temperatures the horizon becomes highly inhomogeneous and tends to pinch off. Entropically and energetically, these solutions cannot serve as the end-state of the dynamical instability, which strongly suggests that a transition to a solution localized in the transverse direction is taking place, in a process that potentially violates the cosmic censorship conjecture.

  20. Limited divergence among populations of rice striped stem borer in southeast China caused by gene flow: Implications for resistance management

    Institute of Scientific and Technical Information of China (English)

    Chao YANG; Xiao YANG; Qiang FU; Kai XU; Bao-Rong LU

    2012-01-01

    Rice striped stem borer (RSSB,Chilo suppressalis) is a serious lepidopteron pest occurring in rice ecosystems of Asia and Europe.Genetically modified (GM) insect-resistant Bt rice has been developed to deter lepidopteron pests including RSSB.The concern of resistance evolution to the Bt toxin by the pests under commercial cultivation of GM Bt rice and the need of effective management of the resistance encourage the studies of genetic variation and divergence,as well as gene flow of RSSB populations.We analyzed 13 RSSB populations fed on water-oats or rice plants,respectively,from southeast China applying the fluorescent amplified fragment length polymorphism fingerprints.A generally moderate level of genetic variation was detected in the populations,as estimated by Nei's genetic diversity (0.27) and Shannon's index (0.42).The FsT- and AMOVA values indicated a low level (~ 12%) of genetic divergence among the RSSB populations.A relatively frequent gene flow (an average Nm =2.62) was detected among the 12 RSSB populations,which may explain the limited genetic divergence among the rice-feeding populations.This explanation gains support by the assignment test of the corresponding populations,suggesting that a considerable proportion of individuals was contributed from non-native populations.Our results revealed that the moderate level of genetic diversity combined with relatively frequent gene flow among RSSB populations across a large geographical range may slow down the resistance evolution of the RSSB populations,given that a proper measure of resistance management is taken.

  1. Wheat Rust Toolbox Related to New Initiatives on Yellow Rust

    DEFF Research Database (Denmark)

    Hansen, Jens Grønbech; Lassen, Poul

    A wheat rust toolbox was developed in the frame of the Borlaug Global Rust Initiative (BGRI) to support the early warning and monitoring of stem rust on a global scale. The toolbox consists of a number of databases and web applications for data management, quality control, dissemination and display...... of interactive maps; including information on surveillance (disease data over years and across countries for all three rusts) and graphs and maps indicating the distribution of UG99 and related pathotypes. Graphs and maps are integrated with, and disseminated, via the Rust SPORE web portal at FAO (http...

  2. Major gene for field stem rust resistance co-locates with resistance gene Sr12 in "Thatcher" wheat

    Science.gov (United States)

    Stem rust, caused by Puccinia graminis (Pgt), is a damaging disease of wheat that can be controlled by utilizing effecting stem rust resistance genes. "Thatcher" wheat carries complex resistance to stem rust that is enhanced in the presence of the resistance gene Lr34. The purpose of this study was ...

  3. Wheat production and wheat rust management in Canada%加拿大小麦生产和锈病防治

    Institute of Scientific and Technical Information of China (English)

    Allen G. Xue; Dawn T. Chi; 张淑珍; 李卓夫; 徐鹏飞; 姜良宇; 范素杰; 王欣

    2012-01-01

    Wheat is Canada's largest crop with most of the production in the western Canadian Prairie Provinces of Manitoba, Saskatchewan and Alberta. There were approximately ten million hm2 seeded to wheat in Canada, including seven million hm2 of hexaploid spring wheat (Triticum aestivum L), two million hm2 of durum wheat (T. Turgkjum L ssp. Durum (Desf.) Husn.), and one million hm2 of winter wheat (T. Aestivum). Within hexaploid wheat there has been diversification into a number of market classes based on differentend-use quality criteria. The predominant spring bread wheat class has been the Canada Western Red Spring (CWRS) class. Historically, the disease of major concern in wheat was stem rust, caused by Pucdnia graminis f. Sp. Tritid. The first significant stem rust resistant cuttivar in Canada was Thatcher, grown extensively from 1939 until the early 1970s. Thatcher, however, was very susceptible to leaf rust, caused by Pucdnia triticina. Over the years, improved resistance to both stem and leaf rust was achieved with the release of cultivars with additional genes for resistance, primarily Sr2, Sr6, Sr7a, Sr9b, Lr13, Lr14a, Lr16, and Lr34. The genetic resistance has adequately controlled stem rust but leaf rust continues to cause significant losses, partially due to changes in the P. Triticina population which reduced the effectiveness of resistance genes such as Lr13 and Lr16. Stripe rust on wheat, caused by Pucdnia striiformis f. Sp. Tritid, was historically a problem under irrigation in southern Alberta, but since 2000 it has been found annually in the central Canadian prairies and southern Ontario. The genetic basis of resistance to stripe rust in most Canadian wheat cultivars has not been determined, although VTI8 provides partial resistance in many cultivars. In the future, other rust diseases such as wheat stripe rust, or highly virulent new pathotypes of current rust pathogens, such as P. Graminis f. Sp. Tritid race Ug-99, may pose new threats to cereal

  4. Nonhost resistance to rust pathogens – a continuation of continua

    Directory of Open Access Journals (Sweden)

    Jan eBettgenhaeuser

    2014-12-01

    Full Text Available The rust fungi (order: Pucciniales are a group of widely distributed fungal plant pathogens, which can infect representatives of all vascular plant groups. Rust diseases significantly impact several crop species and considerable research focuses on understanding the basis of host specificity and nonhost resistance. Like many pathogens, rust fungi vary considerably in the number of hosts they can infect, such as wheat leaf rust (Puccinia triticina, which can only infect species in the genera Triticum and Aegilops, whereas Asian soybean rust (Phakopsora pachyrhizi is known to infect over 95 species from over 42 genera. A greater understanding of the genetic basis determining host range has the potential to identify sources of durable resistance for agronomically important crops. Delimiting the boundary between host and nonhost has been complicated by the quantitative nature of phenotypes in the transition between these two states. Plant-pathogen interactions in this intermediate state are characterized either by (1 the majority of accessions of a species being resistant to the rust or (2 the rust only being able to partially complete key components of its life cycle. This leads to a continuum of disease phenotypes in the interaction with different plant species, observed as a range from compatibility (host to complete immunity within a species (nonhost. In this review we will highlight how the quantitative nature of disease resistance in these intermediate interactions is caused by a continuum of defense barriers, which a pathogen needs to overcome for successfully establishing itself in the host. To illustrate continua as this underlying principle, we will discuss the advances that have been made in studying nonhost resistance towards rust pathogens, particularly cereal rust pathogens.

  5. Advances in Localization and Molecular Markers of Wheat Leaf Rust Resistance Genes

    Institute of Scientific and Technical Information of China (English)

    YANG Wen-xiang; LIU Da-qun

    2004-01-01

    Genetic resistance is the most economical method of reducing yield losses caused by wheat leaf rust. To identify the leaf rust resistance genes in commonly used parental germplasm and released cultivars become very important for utilizing the genetic resistance tc wheat leaf rust fully. Up to date, about 90 leaf rust resistance genes have been found,of which 51 genes have been located and mapped to special chromosomes, and 56 genes have been designated officially according to the standards set forth in the Catalogue of Gene Symbols for wheat. Twenty-four wheat leaf rust resistance genes have been developed for their molecular markers. It is very important to isolate, characterize, and map leaf rust resistance genes due to the resistance losses of the genes caused by the pathogen continuously.

  6. First report of Pantoea ananatis (Syn. Erwinia uredovora) being associated with peanut rust in Georgia

    Science.gov (United States)

    Peanut rust is caused by the fungus Puccinia arachidis. This disease, if not treated can cause severe damage and defoliation. While sequencing DNA of urediniospores of the rust fungus, BLAST analysis detected many sequences corresponding to the bacterial species Pantoea ananatis. This bacterium, ...

  7. Reaction of peanut cultivars to late leafspot and rust

    Directory of Open Access Journals (Sweden)

    Nimitr Vorasoot

    2003-05-01

    Full Text Available Late leafspot caused by Phaeoisariopsis personata (Berk. & M.A. Curtis van Arx and rust caused by Puccinia arachidis Speg. are among the most serious diseases of peanut. Although fungicide application is effective in controlling the diseases, its high cost is considered uneconomical in many developing countries. In this situation, the use of resistant cultivars offers a better alternative. The objective of this study was to evaluate seven peanut cultivars for their resistances to late leafspot and rust. Peanut cultivars were planted in a randomized complete block design (RCBD with 4 replications at Khon Kaen University Experimental Farm. Natural infection of late leafspot and rust were allowed. Disease score, sporulation index and lesion number per 100 cm2 of leaf area were recorded as the resistance parameters of both diseases. Pod yield, seed yield, shelling percentage, pod number per plant and pod length were also measured. NC 17135 was the most resistant to late leafspot and moderately resistant to rust. NC 17090 was the most resistant to rust but susceptible to late leafspot. NC 17135 and NC 17090 should be recommended as sources of late leafspot and rust resistance, respectively. The two Thai released cultivars, Tainan 9 and Lampang were highly susceptible to both diseases.

  8. Superconductor stripes move on

    Energy Technology Data Exchange (ETDEWEB)

    Tranquada, J. [Physics Department, Brookhaven National Laboratory, Upton, NY (United States)

    1999-11-01

    Differences in fundamental assumptions are behind much of the controversy among theorists over the cause of high-temperature superconductivity the absence of resistance to electrical current at temperatures as high as 130 K in layered copper-oxide compounds. One common assumption is that the charge carriers are distributed uniformly throughout the all-important CuO{sub 2} layers. However, there is growing experimental evidence that this is not the case and that 'stripes' of charge form in these puzzling materials. Now a significant step forward in the struggle to understand the behaviour of charge carriers in high-temperature superconductors has been made at the Oak Ridge National Laboratory in the US. (UK)

  9. Optimal alarm system applied in coffee rust

    Directory of Open Access Journals (Sweden)

    Luciene Resende Gonçalves

    2014-02-01

    Full Text Available Alarm systems have very great utility in detecting and warning of catastrophes. This methodology was applied via TARSO model with Bayesian estimation, serving as a forecasting mechanism for coffee rust disease. The coffee culture is very susceptible to this disease causing several records of incidence in most cultivated crops. Researches involving this limiting factor for production are intense and frequent, indicating environmental factors as responsible for the epidemics spread, which does not occur if these factors are not favorable. The fitting type used by the a posteriori probability, allows the system to be updated each time point. The methodology was applied to the rust index series in the presence of the average temperature series. Thus, it is possible to verify the alarm resulted or in a high catastrophe detection in points at which the catastrophe has not occurred, or in the low detections if the point was already in the catastrophe state.

  10. Evaluation of Soybean Germplasm for Resistance to Soybean Rust in Vietnam

    Science.gov (United States)

    Soybean rust, caused by Phakopsora pachyrhizi Sydow, is a severe foliar disease of soybean [Glycine max (L.) Merr.] that occurs throughout most soybean producing regions of the world. Soybean rust may be managed with fungicides, but the utilization of soybean cultivars that are resistant to the path...

  11. La Roya naranja de la caña de azúcar, una enfermedad emergente: su impacto y comparación con la roya marrón English Translation: Orange rust of sugarcane, an emerging disease: its impact and comparison to brown rust.

    Science.gov (United States)

    Sugarcane orange rust, caused by Puccinia kuehnii, was first detected in Florida in 2007, the first for Western Hemisphere. Subsequently, it has spread to the majority of sugarcane producing countries in the hemisphere. Orange rust is distinguished from brown rust its pustule size which is slightl...

  12. Porous Alumina Films with Width-Controllable Alumina Stripes

    Directory of Open Access Journals (Sweden)

    Huang Shi-Ming

    2010-01-01

    Full Text Available Abstract Porous alumina films had been fabricated by anodizing from aluminum films after an electropolishing procedure. Alumina stripes without pores can be distinguished on the surface of the porous alumina films. The width of the alumina stripes increases proportionally with the anodizing voltage. And the pores tend to be initiated close to the alumina stripes. These phenomena can be ascribed to the electric field distribution in the alumina barrier layer caused by the geometric structure of the aluminum surface.

  13. Porous Alumina Films with Width-Controllable Alumina Stripes.

    Science.gov (United States)

    Huang, Kai; Huang, Shi-Ming; Pu, Lin; Shi, Yi; Wu, Zhi-Ming; Ji, Li; Kang, Jun-Yong

    2010-08-21

    Porous alumina films had been fabricated by anodizing from aluminum films after an electropolishing procedure. Alumina stripes without pores can be distinguished on the surface of the porous alumina films. The width of the alumina stripes increases proportionally with the anodizing voltage. And the pores tend to be initiated close to the alumina stripes. These phenomena can be ascribed to the electric field distribution in the alumina barrier layer caused by the geometric structure of the aluminum surface.

  14. Molecular Characterization of wheat stem rust races in Kenya

    Science.gov (United States)

    Stem or black rust caused by Puccinia graminis f. sp. tritici (Pgt) Erikss. & Henning causes severe losses to wheat (Triticum aestivum L.), historically threatening global wheat production. Characterizing prevalent isolates of Pgt would enhance the knowledge of population dynamics and evolution of t...

  15. Metallic charge stripes in cuprates

    OpenAIRE

    Tranquada, J. M.

    2003-01-01

    Some recent evidence for the existence of dynamic, metallic stripes in the 214-family of cuprates is reviewed. The mechanism of stripe pinning is considered, and changes in the charge density within stripes between the pinned and dynamic phases is discussed. From a purely experimental perspective, dynamic charge stripes are fully compatible with nodal ``quasiparticles'' and other electronic properties common to all superconducting cuprates.

  16. Fighting Asian soybean rust

    Directory of Open Access Journals (Sweden)

    Caspar eLangenbach

    2016-06-01

    Full Text Available Phakopsora pachyrhizi is a biotrophic fungus provoking Asian soybean rust (SBR disease. SBR poses a major threat to global soybean production. Though several resistance genes provided soybean immunity to certain P. pachyrhizi races, the pathogen swiftly overcame this resistance. Therefore, fungicides are the only current means to control SBR. However, insensitivity to fungicides is soaring in P. pachyrhizi and, therefore, alternative measures are needed for SBR control. In this article, we discuss the different approaches for fighting SBR and their potential, disadvantages, and advantages over other measures. These encompass conventional breeding for SBR resistance, transgenic approaches, exploitation of transcription factors, secondary metabolites, and antimicrobial peptides, RNAi/HIGS, and biocontrol strategies. It seems that an integrating approach exploiting different measures is likely to provide the best possible means for the effective control of SBR.

  17. Stripes and Superconductivity in Cuprates

    OpenAIRE

    Tranquada, John M.

    2011-01-01

    Holes doped into the CuO2 planes of cuprate parent compounds frustrate the antiferromagnetic order. The development of spin and charge stripes provides a compromise between the competing magnetic and kinetic energies. Static stripe order has been observed only in certain particular compounds, but there are signatures which suggest that dynamic stripe correlations are common in the cuprates. Though stripe order is bad for superconducting phase coherence, stripes are compatible with strong pair...

  18. Barberry rust survey – developing tools for diagnosis, analysis and data management

    DEFF Research Database (Denmark)

    Justesen, Annemarie Fejer; Hansen, Jens Grønbech; Hovmøller, Mogens Støvring

    . arrhenatheri and P. striiformoides on barberry species. Survey and DNA sample maps with species designation were displayed in the Wheat Rust ToolBox. The future aim is to integrate barberry rust survey data based on molecular diagnostics and infection assays from research groups world-wide in order to gain......Barberry (Berberis spp.) may serve as alternate host of several Puccinia species including Puccinia graminis and P. striiformis causing stem and yellow rust on cereals and grasses, respectively. In order to study the importance of barberry in the epidemiology of Puccinia species in the CWANA region...... a rust survey was initiated. The aim was to 1) develop a surveillance protocol 2) develop molecular diagnostic tools for identifying Puccinia spp. from aecial samples, and 3) develop a data management and display system of results as part of the Wheat Rust ToolBox (http...

  19. A small cysteine-rich protein from the Asian soybean rust fungus, Phakopsora pachyrhizi, suppresses plant immunity

    Science.gov (United States)

    The Asian soybean rust fungus, Phakopsora pachyrhizi, is an obligate pathogen capable of causing explosive disease epidemics that drastically reduce the yield of soybean (Glycine max). Currently, the molecular mechanisms by which P. pachyrhizi and other rust fungi cause disease are poorly understood...

  20. Unveiling common responses of Medicago truncatula to appropriate and inappropriate rust species

    Directory of Open Access Journals (Sweden)

    Maria Carlota eVaz Patto

    2014-11-01

    Full Text Available Little is known about the nature of effective defense mechanisms in legumes to pathogens of remotely related plant species. Some rust species are among pathogens with broad host range causing dramatic losses in various crop plants. To understand and compare the different host and nonhost resistance responses of legume species against rusts, we characterized the reaction of the model legume Medicago truncatula to one appropriate (Uromyces striatus and two inappropriate (U. viciae-fabae and U. lupinicolus rusts. We found that similar pre and post-haustorial mechanisms of resistance appear to be operative in M. truncatula against appropriate and inappropriate rust fungus. The appropriate U. striatus germinated better on M. truncatula accessions then the inappropriate U. viciae-fabae and U. lupinicolus, but once germinated, germ tubes of the three rusts had a similar level of success in finding stomata and forming an appressoria over a stoma. However responses to different inappropriate rust species also showed some specificity, suggesting a combination of non specific and specific responses underlying this legume nonhost resistance to rust fungi. Further genetic and expression analysis studies will contribute to the development of the necessary molecular tools to use the present information on host and nonhost resistance mechanisms to breed for broad-spectrum resistance to rust in legume species.

  1. An analysis of the risk of introduction of additional strains of the rust puccinia psidii Winter ('Ohi'a Rust) to Hawai'i

    Science.gov (United States)

    Loope, Lloyd; La Rosa, Anne Marie

    2010-01-01

    In April 2005, the rust fungus Puccinia psidii (most widely known as guava rust or eucalyptus rust) was found in Hawai'i. This was the first time this rust had been found outside the Neotropics (broadly-defined, including subtropical Florida, where the rust first established in the 1970s). First detected on a nursery-grown 'ohi'a plant, it became known as ''ohi'a rust'in Hawai'i. The rust spread rapidly and by August 2005 had been found throughout the main Hawaiian Islands. The rust probably reached Hawai'i via the live plant trade or via the foliage trade. In Hawai'i, the rust has infected three native plant species and at least eight non-native species. Effects have been substantial on the endangered endemic plant Eugenia koolauensis and the introduced rose apple, Syzygium jambos. Billions of yellow, asexual urediniospores are produced on rose apple, but a complete life cycle (involving sexual reproduction) has not yet been observed. The rust is autoecious (no alternate host known) on Myrtaceae. The strain introduced into Hawai'i is found sparingly on 'ohi'a (Metrosideros polymorpha), the dominant tree of Hawai'i's forests, with sporadic damage detected to date. The introduction of a rust strain that causes widespread damage to 'ohi'a would be catastrophic for Hawai'i's native biodiversity. Most imports of material potentially contaminated with rust are shipped to Hawai'i from Florida and California (from which P. psidii was reported in late 2005 by Mellano, 2006). Florida is known to have multiple strains. The identity of the strain or strains in California is unclear, but one of them is known to infect myrtle, Myrtus communis, a species commonly imported into Hawai'i. It is important to ecosystem conservation and commercial forestry that additional rust strains or genotypes be prevented from establishing in Hawai'i. The purpose of this analysis of risk is to evaluate the need for an interim rule by the Hawai'i Department of Agriculture to regulate plant

  2. Mapping Wheat Stem Rust Resistance Genes in 'Kingbird'

    Science.gov (United States)

    Stem rust caused by the fungus Puccinia graminis f. sp. tritici has historically been one of the most important diseases of wheat. Although losses have been much reduced in the last fifty years, new highly virulent races of the pathogen have recently emerged in East Africa. These new races are virul...

  3. Stripes and superconductivity in cuprates

    Science.gov (United States)

    Tranquada, John M.

    2012-06-01

    Holes doped into the CuO2 planes of cuprate parent compounds frustrate the antiferromagnetic order. The development of spin and charge stripes provides a compromise between the competing magnetic and kinetic energies. Static stripe order has been observed only in certain particular compounds, but there are signatures which suggest that dynamic stripe correlations are common in the cuprates. Though stripe order is bad for superconducting phase coherence, stripes are compatible with strong pairing. Ironically, magnetic-field-induced stripe order appears to enhance the stability of superconducting order within the planes.

  4. Stripes and superconductivity in cuprates

    Energy Technology Data Exchange (ETDEWEB)

    Tranquada, John M., E-mail: jtran@bnl.gov [Condensed Matter Physics and Materials Science Dept., Brookhaven National Laboratory, Upton, NY 11973-5000 (United States)

    2012-06-01

    Holes doped into the CuO{sub 2} planes of cuprate parent compounds frustrate the antiferromagnetic order. The development of spin and charge stripes provides a compromise between the competing magnetic and kinetic energies. Static stripe order has been observed only in certain particular compounds, but there are signatures which suggest that dynamic stripe correlations are common in the cuprates. Though stripe order is bad for superconducting phase coherence, stripes are compatible with strong pairing. Ironically, magnetic-field-induced stripe order appears to enhance the stability of superconducting order within the planes.

  5. Metallic charge stripes in cuprates

    Energy Technology Data Exchange (ETDEWEB)

    Tranquada, J.M

    2004-08-01

    Some recent evidence for the existence of dynamic, metallic stripes in the 214 family of cuprates is reviewed. The mechanism of stripe pinning is considered, and changes in the charge density within stripes between the pinned and dynamic phases is discussed. From a purely experimental perspective, dynamic charge stripes are fully compatible with nodal 'quasiparticles' and other electronic properties common to all superconducting cuprates.

  6. Metallic charge stripes in cuprates

    Science.gov (United States)

    Tranquada, J. M.

    2004-08-01

    Some recent evidence for the existence of dynamic, metallic stripes in the 214 family of cuprates is reviewed. The mechanism of stripe pinning is considered, and changes in the charge density within stripes between the pinned and dynamic phases is discussed. From a purely experimental perspective, dynamic charge stripes are fully compatible with nodal “quasiparticles” and other electronic properties common to all superconducting cuprates.

  7. Tamper resistant magnetic stripes

    Science.gov (United States)

    Naylor, Richard Brian; Sharp, Donald J.

    1999-01-01

    This invention relates to a magnetic stripe comprising a medium in which magnetized particles are suspended and in which the encoded information is recorded by actual physical rotation or alignment of the previously magnetized particles within the flux reversals of the stripe which are 180.degree. opposed in their magnetic polarity. The magnetized particles are suspended in a medium which is solid, or physically rigid, at ambient temperatures but which at moderately elevated temperatures, such as 40.degree. C., is thinable to a viscosity permissive of rotation of the particles therein under applications of moderate external magnetic field strengths within acceptable time limits.

  8. Archaeophytopathology of Global Soybean Rust

    Science.gov (United States)

    Phakopsora pachyrhizi and P. meibomiae are two rust species that infect soybean (Glycine max). A number of other hosts support the uredinial growth of these Phakopsora, including Pachyrhizus erosus, Pueraria lobata, and Vigna unguiculata, but no aecial host is known. Traditionally, these two species...

  9. Genetic mapping of race-specific stem rust resistance in the synthetic hexaploid W7984 x Opata M85 mapping population

    Science.gov (United States)

    Stem rust (caused by Puccinia graminis f. sp. tritici) has historically caused severe yield losses of wheat (Triticum aestivum) worldwide and has been one of the most feared diseases of wheat and barley (Hordeum vulgare). Stem rust has been controlled successfully through the use of resistant varie...

  10. Progress Towards Genetics and Breeding for Minor Genes Based Resistance to Ug99 and Other Rusts in CIMMYT High-Yielding Spring Wheat

    Institute of Scientific and Technical Information of China (English)

    Ravi Prakash Singh; Sybil Herrera-Foessel; Julio Huerta-Espino; Sukhwinder Singh; Sridhar Bhavani; Caixia Lan; and Bhoja Raj Basnet

    2014-01-01

    Wheat rusts continue to cause signiifcant losses worldwide despite major efforts given to their genetic control. This is due to frequent evolution and selection of virulence in pathogen overcoming the deployed race-speciifc resistance genes. Although the life of effective race-speciifc resistance genes can be prolonged by using gene combinations, an alternative approach being implemented at CIMMYT is to deploy varieties that posses adult plant resistance (APR) based on combinations of minor, slow rusting genes. When present alone, the APR genes do not confer adequate resistance especially under high disease pressure; however, combinations of 4 or 5 minor genes usually result in “near-immunity” or a high level of resistance. Although only a few APR genes are catalogued, various APR QTLs are now known and could lead to further characterization of additional genes. Four characterized genes have pleiotropic effects in conferring partial APR to all 3 rusts and powdery mildew, thus simplifying the task of breeding wheat varieties that are resistant to multiple diseases. Signiifcant progress was made recently in developing high-yielding wheat germplasm that possesses high levels of APR to all three rusts by implementing a Mexico-Kenya shuttle breeding scheme. Parents with APR to Ug99 were hybridized with high-yielding parents that had adequate to high levels of APR to leaf rust and yellow rust. Segregating populations and advanced lines from these crosses were selected under high rust pressures in Mexico (leaf rust and yellow rust) and Kenya (Ug99 stem rust and yellow rust) to identify high-yielding progenies that possess high to adequate APR to all three rusts. International distribution of these high-yielding wheats is underway through CIMMYT international yield trials and screening nurseries. It is expected that several wheat varieties with APR to three rusts will be released and grown in various countries in the near-future that will allow determining the

  11. Using hierarchical clustering of secreted protein families to classify and rank candidate effectors of rust fungi.

    Directory of Open Access Journals (Sweden)

    Diane G O Saunders

    Full Text Available Rust fungi are obligate biotrophic pathogens that cause considerable damage on crop plants. Puccinia graminis f. sp. tritici, the causal agent of wheat stem rust, and Melampsora larici-populina, the poplar leaf rust pathogen, have strong deleterious impacts on wheat and poplar wood production, respectively. Filamentous pathogens such as rust fungi secrete molecules called disease effectors that act as modulators of host cell physiology and can suppress or trigger host immunity. Current knowledge on effectors from other filamentous plant pathogens can be exploited for the characterisation of effectors in the genome of recently sequenced rust fungi. We designed a comprehensive in silico analysis pipeline to identify the putative effector repertoire from the genome of two plant pathogenic rust fungi. The pipeline is based on the observation that known effector proteins from filamentous pathogens have at least one of the following properties: (i contain a secretion signal, (ii are encoded by in planta induced genes, (iii have similarity to haustorial proteins, (iv are small and cysteine rich, (v contain a known effector motif or a nuclear localization signal, (vi are encoded by genes with long intergenic regions, (vii contain internal repeats, and (viii do not contain PFAM domains, except those associated with pathogenicity. We used Markov clustering and hierarchical clustering to classify protein families of rust pathogens and rank them according to their likelihood of being effectors. Using this approach, we identified eight families of candidate effectors that we consider of high value for functional characterization. This study revealed a diverse set of candidate effectors, including families of haustorial expressed secreted proteins and small cysteine-rich proteins. This comprehensive classification of candidate effectors from these devastating rust pathogens is an initial step towards probing plant germplasm for novel resistance components.

  12. Using Hierarchical Clustering of Secreted Protein Families to Classify and Rank Candidate Effectors of Rust Fungi

    Science.gov (United States)

    Saunders, Diane G. O.; Win, Joe; Cano, Liliana M.; Szabo, Les J.; Kamoun, Sophien; Raffaele, Sylvain

    2012-01-01

    Rust fungi are obligate biotrophic pathogens that cause considerable damage on crop plants. Puccinia graminis f. sp. tritici, the causal agent of wheat stem rust, and Melampsora larici-populina, the poplar leaf rust pathogen, have strong deleterious impacts on wheat and poplar wood production, respectively. Filamentous pathogens such as rust fungi secrete molecules called disease effectors that act as modulators of host cell physiology and can suppress or trigger host immunity. Current knowledge on effectors from other filamentous plant pathogens can be exploited for the characterisation of effectors in the genome of recently sequenced rust fungi. We designed a comprehensive in silico analysis pipeline to identify the putative effector repertoire from the genome of two plant pathogenic rust fungi. The pipeline is based on the observation that known effector proteins from filamentous pathogens have at least one of the following properties: (i) contain a secretion signal, (ii) are encoded by in planta induced genes, (iii) have similarity to haustorial proteins, (iv) are small and cysteine rich, (v) contain a known effector motif or a nuclear localization signal, (vi) are encoded by genes with long intergenic regions, (vii) contain internal repeats, and (viii) do not contain PFAM domains, except those associated with pathogenicity. We used Markov clustering and hierarchical clustering to classify protein families of rust pathogens and rank them according to their likelihood of being effectors. Using this approach, we identified eight families of candidate effectors that we consider of high value for functional characterization. This study revealed a diverse set of candidate effectors, including families of haustorial expressed secreted proteins and small cysteine-rich proteins. This comprehensive classification of candidate effectors from these devastating rust pathogens is an initial step towards probing plant germplasm for novel resistance components. PMID:22238666

  13. Disruption of Rpp1-mediated soybean rust immunity by virus-induced gene silencing.

    Science.gov (United States)

    Cooper, Bret; Campbell, Kimberly B; McMahon, Michael B; Luster, Douglas G

    2013-01-01

    Phakopsora pachyrhizi, a fungus that causes rust disease on soybean, has potential to impart significant yield loss and disrupt food security and animal feed production. Rpp1 is a soybean gene that confers immunity to soybean rust, and it is important to understand how it regulates the soybean defense system and to use this knowledge to protect commercial crops. It was previously discovered that some soybean proteins resembling transcription factors accumulate in the nucleus of Rpp1 soybeans. To determine if they contribute to immunity, Bean pod mottle virus was used to attenuate or silence the expression of their genes. Rpp1 plants subjected to virus-induced gene silencing exhibited reduced amounts of RNA for 5 of the tested genes, and the plants developed rust-like symptoms after subsequent inoculation with fungal spores. Symptoms were associated with the accumulation of rust fungal RNA and protein. Silenced plants also had reduced amounts of RNA for the soybean Myb84 transcription factor and soybean isoflavone O-methyltransferase, both of which are important to phenylpropanoid biosynthesis and lignin formation, crucial components of rust resistance. These results help resolve some of the genes that contribute to Rpp1-mediated immunity and improve upon the knowledge of the soybean defense system. It is possible that these genes could be manipulated to enhance rust resistance in otherwise susceptible soybean cultivars.

  14. Leaf rust of wheat: Pathogen biology, variation and host resistance

    Science.gov (United States)

    Rusts are important pathogens of angiosperms and gymnosperms. Rust fungi are among the most important pathogens of cereals. Cereal rusts are heteroecious and macrocyclic requiring two taxonomically unrelated hosts to complete a five spore stage life cycle. Cereal rust fungi are highly variable for v...

  15. Development of a diagnostic co-dominant marker for stem rust resistance gene Sr47 introgressed from Aegilops speltoides into durum wheat

    Science.gov (United States)

    Stem rust (caused by Puccinia graminis f. sp. tritici, abbreviated as Pgt) resistance gene Sr47, originally transferred from Aegilops speltoides to durum wheat (Triticum turgidum subsp. durum) line DAS15, confers a high level of resistance to Pgt race TTKSK (known as Ug99). Recently, the durum Rust...

  16. Assessing the variability of Red Stripe Disease in Louisiana sugarcane using precision agriculture methods

    Science.gov (United States)

    Symptoms of red stripe disease caused by Acidovorax avenae subsp. avenae in Louisiana between 1985 and 2010 were limited to the leaf stripe form which caused no apparent yield loss. During 2010, the more severe top rot form was observed, and a study was initiated to investigate the distribution of r...

  17. Relación entre Incidencia y Severidad de la Roya Asiática de la Soya Causada por Phakopsora pachyrhizi Sydow & Sydow Relationship Between Incidence and Severity of Asian Soybean Rust Caused by Phakopsora pachyrhizi Sydow & Sydow

    Directory of Open Access Journals (Sweden)

    Felipe Rafael Garcés Fiallos

    2011-12-01

    Full Text Available Se relaciona la incidencia con la severidad de la roya asiática de la soya, donde los valores generados por las ecuaciones pueden ser usados en cualquier estudio de este patosistema, proporcionando una herramienta para evaluar la incidencia como también la severidad. Se generaron gradientes de la enfermedad mediante el uso de fungicidas y momentos de aplicación, de manera preventiva y curativa. El experimento de campo con el cultivar Nidera 5909 RG, fue distribuido en bloques completos al azar. La intensidad de la roya asiática fue medida en los estratos inferior, medio y superior de la planta, a través de diferentes conteos de incidencia (porcentaje y severidad (lesiones cm-2, urédias cm-2 y porcentaje en folíolos. Las regresiones realizadas, presentaron una correlación significativa entre incidencia y severidad a 1% de probabilidad. Con los datos obtenidos, el evaluador puede escoger el método de cuantificación mas razonable o confiable a su criterio para otros trabajos de investigación o aplicar un determinado control de la enfermedad, utilizando las ecuaciones lineales generadas, facilitando el trabajo de cuantificar la roya asiática, bien se busque medir la incidencia (% o el número de lesiones cm-2, urédias cm-2 o severidad (%.Incidence is related to severity of the Asian soybean rust, where values generated by the equations can be used in any study of this pathosystem, providing a tool to evaluate incidence as well severity. Gradients of the disease were generated by means of the use of fungicides and moments of application, in a preventive and curative way. The field experiment with the cultivar Nidera RG 5909, was distributed in a randomized complete block. The intensity of Asian rust layers was measured in the lower, middle and top of the plant, through various counts of incidence (percentage and severity (lesions cm-2, uredinia cm-2 and percentage in leaflets. The regressions showed a significant correlation between

  18. Molecular mapping of stem rust resistance loci effective against the Ug99 race group of the stem rust pathogen and identification of SNP marker linked to stem rust resistance gene Sr28

    Science.gov (United States)

    Wheat landrace PI 177906 has field resistance to the Ug99 race group and seedling resistance to stem rust caused by Puccinia graminis f. sp. tritici (Pgt) races TTKSK, TTKST, and BCCBC. Two populations were developed from a cross between PI 177906 and LMPG-6, 138 double haploid (DH) lines and 140 re...

  19. Exploding Stars and Stripes

    Science.gov (United States)

    2011-03-01

    The discovery of a pattern of X-ray "stripes" in the remains of an exploded star may provide the first direct evidence that a cosmic event can accelerate particles to energies a hundred times higher than achieved by the most powerful particle accelerator on Earth. This result comes from a very long observation of the Tycho supernova remnant with NASA's Chandra X-ray Observatory. It could explain how some of the extremely energetic particles bombarding the Earth, called cosmic rays, are produced. "We've seen lots of intriguing structures in supernova remnants, but we've never seen stripes before," said Kristoffer Eriksen, a postdoctoral researcher at Rutgers University who led the study. "This made us think very hard about what's happening in the blast wave of this powerful explosion." This latest study from Chandra provides support for a theory about how magnetic fields can be dramatically amplified in such blast waves. In this theory, the magnetic fields become highly tangled and the motions of the particles very turbulent near the expanding supernova shock wave at the front edge of the supernova remnant. High-energy charged particles can bounce back and forth across the shock wave repeatedly, gaining energy with each crossing. Theoretical models of the motion of the most energetic particles -- which are mostly protons -- are predicted to leave a messy network of holes and dense walls corresponding to weak and strong regions of magnetic fields, respectively. The X-ray stripes discovered by the Chandra researchers are thought to be regions where the turbulence is greater and the magnetic fields more tangled than surrounding areas, and may be the walls predicted by the theory. Electrons become trapped in these regions and emit X-rays as they spiral around the magnetic field lines. However, the regular and almost periodic pattern of the X-ray stripes was not predicted by the theory. "It was a big surprise to find such a neatly arranged set of stripes," said co

  20. STRIPE: Remote Driving Using Limited Image Data

    Science.gov (United States)

    Kay, Jennifer S.

    1997-01-01

    Driving a vehicle, either directly or remotely, is an inherently visual task. When heavy fog limits visibility, we reduce our car's speed to a slow crawl, even along very familiar roads. In teleoperation systems, an operator's view is limited to images provided by one or more cameras mounted on the remote vehicle. Traditional methods of vehicle teleoperation require that a real time stream of images is transmitted from the vehicle camera to the operator control station, and the operator steers the vehicle accordingly. For this type of teleoperation, the transmission link between the vehicle and operator workstation must be very high bandwidth (because of the high volume of images required) and very low latency (because delayed images can cause operators to steer incorrectly). In many situations, such a high-bandwidth, low-latency communication link is unavailable or even technically impossible to provide. Supervised TeleRobotics using Incremental Polyhedral Earth geometry, or STRIPE, is a teleoperation system for a robot vehicle that allows a human operator to accurately control the remote vehicle across very low bandwidth communication links, and communication links with large delays. In STRIPE, a single image from a camera mounted on the vehicle is transmitted to the operator workstation. The operator uses a mouse to pick a series of 'waypoints' in the image that define a path that the vehicle should follow. These 2D waypoints are then transmitted back to the vehicle, where they are used to compute the appropriate steering commands while the next image is being transmitted. STRIPE requires no advance knowledge of the terrain to be traversed, and can be used by novice operators with only minimal training. STRIPE is a unique combination of computer and human control. The computer must determine the 3D world path designated by the 2D waypoints and then accurately control the vehicle over rugged terrain. The human issues involve accurate path selection, and the

  1. Variation in chromosome constitution of the Xiaoyan series partial amphiploids and its relations to stripe rust and stem rust resistance

    Science.gov (United States)

    In the tertiary gene pool of wheat, tall wheatgrass Thinopyrum ponticum (2n = 10x = 70) is an excellent source of resistance genes against numerous wheat diseases. The creation of wheat-Th. ponticum partial amphiploids is an intermediate step for transferring the useful genes from Th. ponticum to w...

  2. Image processing methods for quantitatively detecting soybean rust from multispectral images

    Science.gov (United States)

    Soybean rust, caused by Phakopsora pachyrhizi, is one of the most destructive diseases for soybean production. It often causes significant yield loss and may rapidly spread from field to field through airborne urediniospores. In order to implement timely fungicide treatments for the most effective c...

  3. The influence of canopy density on willow leaf rust (Melampsora epitea) severity in willow short rotation coppice

    Energy Technology Data Exchange (ETDEWEB)

    Toome, M.; Heinsoo, K.; Holm, B.; Luik, A. [Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 1A, Tartu 51014 (Estonia)

    2010-08-15

    Willow short rotation coppice is used as a renewable energy source and also as a vegetation filter for purifying wastewater. Wastewater irrigation might change microclimatic conditions and increase the canopy density in plantations, which might decrease production due to leaf rust (Melampsora epitea). The aim of this study was to estimate the impact of the canopy density on rust abundance on willows. For that, we counted rust pustules on leaves of five different willow clones from dense and sparse areas in both the wastewater irrigated and control part of the plantation. The results demonstrated clear differences between clones; clone '81090' was very susceptible, '78183' susceptible, '78021' fairly tolerant and 'Tora' rust resistant. Clone 'Gudrun', which was previously reported resistant, had severe rust damages in Estonia. In the case of clones '78183' and '78021' there were significantly more rust pustules per leaf unit area at areas with denser canopy, which confirmed that higher plant density could result in biomass losses caused by leaf rust. No differences, however, were detected between dense and sparse areas of hybrid clone 'Gudrun', most probably because in this particular case leaves from upper canopy layer were used. There was a tendency detected that clones with a higher number of shoots per plant had more rust damages on their leaves, however, the correlation was not statistically confirmed. In conclusion, the impact of canopy density on rust abundance is clone-specific and significant in the case of clones on which infection starts from the lower part of the canopy. (author)

  4. Genetic analysis of seedling resistance to crown rust in five diploid oat (Avena strigosa) accessions.

    Science.gov (United States)

    Cabral, A L; Park, R F

    2016-02-01

    Crown rust, caused by Puccinia coronata Corda f. sp. avenae Eriks., is a serious menace in oats, for which resistance is an effective means of control. Wild diploid oat accessions are a source of novel resistances that first need to be characterised prior to introgression into locally adapted oat cultivars. A genetic analysis of resistance to crown rust was carried out in three diverse diploid oat accessions (CIav6956, CIav9020, PI292226) and two cultivars (Saia and Glabrota) of A. strigosa. A single major gene conditioning resistance to Australian crown rust pathotype (Pt) 0000-2 was identified in each of the three accessions. Allelism tests suggested that these genes are either the same, allelic, or tightly linked with less than 1 % recombination. Similarly, a single gene was identified in Glabrota, and possibly two genes in Saia; both cultivars previously reported to carry two and three crown rust resistance genes, respectively. The identified seedling resistance genes could be deployed in combination with other resistance gene(s) to enhance durability of resistance to crown rust in hexaploid oat. Current diploid and hexaploid linkage maps and molecular anchor markers (simple sequence repeat [SSR] and diversity array technology [DArT] markers) should facilitate their mapping and introgression into hexaploid oat.

  5. Sealing and anti-corrosive action of tannin rust converters

    Energy Technology Data Exchange (ETDEWEB)

    Gust, J.; Bobrowicz, J. (Building Research Inst., Warsaw (Poland))

    1993-01-01

    A possibility of the application of mercury porosimetry in the investigation on porosity in corrosion products of the carbon steel along with the degree of sealing by the use of tannin rust converters is presented. The effect of the atmospheric humidity on the rust conversion including the time of that conversion on the degree of rust sealing is discussed. The results of the corrosion investigation of carbon steel covered with a layer of the rust converted with tannin-containing agents are presented.

  6. Label-Free Detection of Soybean Rust Spores using Photonic Crystal Biosensors

    Science.gov (United States)

    Soybean rust, caused by the fungus Phakopsora pachyrhizi, is one of the most devastating foliar diseases affecting soybeans grown worldwide. The disease was reported for the first time in the United States in 2004. Early spore detection, prior to the appearance of visible symptoms, is critical to ef...

  7. URS Brava – a new oat cultivar with partial resistance to crown rust

    Directory of Open Access Journals (Sweden)

    Luiz Carlos Federizzi

    2015-08-01

    Full Text Available The cultivar URS Brava, obtained from a simple cross between the line ‘UFRGS 995078-2’ and the cultivar ‘URS 21’, shows high grain yield and stability, high grain quality, desirable agronomical traits and partial resistance to crown rust, caused by the fungus Puccinia coronata f. sp. avenae.

  8. Resistance to the soybean rust pathogen (Phakopsora Pachyrhizi) in common bean cultivar CNC

    Science.gov (United States)

    Soybean rust (SBR), caused by Phakopsora pachyrhizi, is a new disease in the Americas that has moved swiftly from one country to another. P. pachyrhizi was first reported on soybeans in Paraguay (2001) and soon after in Brazil and Argentina (2002), Bolivia (2003), Uruguay and the USA, (2004), and M...

  9. A new soybean rust resistance allele from PI 423972 at the Rpp4 locus

    Science.gov (United States)

    Phakopsora pachyrhizi is a fungal pathogen and the cause of Asian soybean rust (SBR). P. pachyrhizi invaded the continental United States in 2004 and has since been a threat to the soybean industry. There are six described loci that harbor resistance to P. pachyrhizi (Rpp) genes. The resistance of P...

  10. Sources of stem rust resistance in wheat-alien introgression lines

    Science.gov (United States)

    Stem rust, caused by Puccinia graminis f. sp. tritici, is one of the most devastating diseases of wheat and the novel highly virulent race of TTKSK and its lineage are threatening wheat production worldwide. The objective of the study was to identify new sources of resistance in wheat-alien introgre...

  11. The rust genus Frommeëlla revisited: a later synonym of Phragmidium after all

    Science.gov (United States)

    Frommeëlla (Phragmidiaceae, Pucciniales, Basidiomycota) causes rust on members of tribe Potentilleae (Rosaceae). This genus currently includes two species and is typified by F. tormentillae. It has been distinguished from Phragmidium on the basis of having only one germ pore per cell of the teliospo...

  12. Molecular mapping of R11, a novel rust resistance gene in sunflower (Helianthus annuus L.)

    Science.gov (United States)

    Sunflower production in North America has recently been threatened by the evolution of new virulent pathotypes of sunflower rust caused by the fungus Puccinia helianthi Schwein. Rf ANN-1742, an ‘HA 89’ backcross restorer line derived from wild annual sunflower (Helianthus annuus L), was identified a...

  13. Freezing of a stripe liquid.

    Science.gov (United States)

    Lee, S-H; Tranquada, J M; Yamada, K; Buttrey, D J; Li, Q; Cheong, S-W

    2002-03-25

    The existence of a stripe-liquid phase in a layered nickelate, La(1.725)Sr(0.275)NiO(4), is demonstrated through neutron scattering measurements. We show that incommensurate magnetic fluctuations evolve continuously through the charge-ordering temperature, although an abrupt decrease in the effective damping energy is observed on cooling through the transition. The energy and momentum dependence of the magnetic scattering are parametrized with a damped-harmonic-oscillator model describing overdamped spin waves in the antiferromagnetic domains defined instantaneously by charge stripes.

  14. Freezing of a Stripe Liquid

    Science.gov (United States)

    Lee, S.-H.; Tranquada, J. M.; Yamada, K.; Buttrey, D. J.; Li, Q.; Cheong, S.-W.

    2002-03-01

    The existence of a stripe-liquid phase in a layered nickelate, La1.725Sr0.275NiO4, is demonstrated through neutron scattering measurements. We show that incommensurate magnetic fluctuations evolve continuously through the charge-ordering temperature, although an abrupt decrease in the effective damping energy is observed on cooling through the transition. The energy and momentum dependence of the magnetic scattering are parametrized with a damped-harmonic-oscillator model describing overdamped spin waves in the antiferromagnetic domains defined instantaneously by charge stripes.

  15. Variability In Sloan's Equatorial Stripe

    Science.gov (United States)

    Rashkov, Valery; Spergel, D.; Strauss, M.; Ivezic, Z.; Sesar, B.

    2007-12-01

    The Sloan Digital Sky Survey (SDSS) equatorial Stripe 82 is located between 22h 24min Branimir Sesar (Sesar et al., 2007) have put together a list of 13051 variable sources, each of which was observed an average of 20 times. I have calculated fits for two variability parameters (amplitude and characteristic timescale) for these objects using maximum likelihood statistics. The list is being probed for violent variability, as from BL Lac Objects and OVVs. Knowledge of these objects' parameters will help separate their contribution in the microwave from that of the CMB when the equatorial Stripe 82 is eventually observed with the Atacama Cosmology Telescope.

  16. Identification of Green Rust in Groundwater

    DEFF Research Database (Denmark)

    Christiansen, Bo C.; Balic Zunic, Tonci; Dideriksen, Knud

    2009-01-01

    Green rust, a family of Fe(II),Fe(III) layered double hydroxides, is believed to be present in environments close to the Fe(II)/Fe(III) transition zone. Attempts to identify members of this family in nature have proven difficult because the material is oxidized after only a few minutes exposure...... of synthetic GRCO3, the green rust familymemberwherecarbonate and water occupy the interlayer between the iron-hydroxide layers. The method was then tested on samples taken from an artesian well and a deep underground experimental station, both within the Fe(II)/Fe(III) redox zone. In both cases, GRCO3 could...... be identified. Currently, transport models for predicting the behavior of contaminants in groundwater do not include parameters for green rust. This work demonstrates they should....

  17. Genetics and Mapping of Seedling Resistance to Ug99 Stem Rust in the Winter Wheat Cultivar Triumph 64 and Differentiation of SrTmp, SrCad, and Sr42

    Science.gov (United States)

    Stem rust, caused by the fungus Puccinia graminis f. sp. tritici Eriks. & E. Henn. (Pgt), is an important disease of wheat that can be controlled by deploying effective stem rust resistance (Sr) genes. The emergence of virulent Pgt races in Africa, namely Ug99 and its variants, has stimulated the se...

  18. Environmental quality for striped bass

    Energy Technology Data Exchange (ETDEWEB)

    Coutant, C. C.

    1980-01-01

    Effects of environmental changes on the quality of life for striped bass populations can be evaluated objectively with modern procedures of environmental risk analysis. Such analysis requires knowledge of the sources of risk in the context of environmental requirements of the species. A prime environmental requirement of striped bass appears to be a suitable thermal structure that accommodates the hereditary thermal niche, which changes with age. Strong thermal preferences had promoted striped bass survival in the pristine natural estuaries of eastern North America, but they may increase risks to the species in some new environments and in native ones that are altered by man. The magnitude and likelihood of risks for striped bass from many pollutants and physical changes (structures or water flow, for example) depend upon the fish's thermally controlled distribution. The importance of a species' thermal niche and of the thermal structure of aquatic environments for population success is only beginning to be recognized and included in risk assessments.

  19. Zoete rust : een muzikale soap-detective

    NARCIS (Netherlands)

    Maas, P.

    1989-01-01

    De komedie' Zoete Rust' werd geschreven in opdracht van Theater de Tobbe in Voorburg . Naast de circa 120 professionele voorstellingen die elk seizoen in dit theater plaats vinden, organiseert De Tobbe een maal per laar een eigen theaterproduktie, die wordt gespeeld door het Tobbe-toneel, een ad-hoc

  20. Genetic Analysis and Molecular Tagging a Novel Yellow Rust Resistance Gene Derived from Synthetic Hexaploid Wheat Germplasm M08

    Institute of Scientific and Technical Information of China (English)

    CHEN Guo-yue; LI Li-hui

    2008-01-01

    Yellow rust of wheat(caused by Puccinia striiformis Westend.f sp.tritici Eriks.)has been periodically epidemic and severely damaged wheat production in China.The development of resistant cultivars could be an effective way to reduce yield losses of wheat caused by yellow rust.Rust reaction tests and genetic analysis indicated that M08,the synthetic hexaploid wheat derived from hybridization between Triticum durum(2n=6X=28;genome AABB)and Aegilops tauschii (2n=2X=14;genome DD),showed resistance to current prevailing yellow rust races at seedling stage,which was controlled by a single dominant gene,designated as YrAm.Bulked segregant analysis was used to identify microsatellite markers linked to gene YrAm in an F2 population derived from cross M08(resistant)×Jinan 17(susceptible).Three microsatellite marker loci Xgwm77,Xgwm285,and Xgwm131 located on chromosome 3B were mapped to the YrAm locus. Xgwm131 was the closest marker locus and showed a linkage distance of 7.8 cM to the resistance locus.Thus,it is assumed that YrAm for resistance to yellow rust may be derived from Triticum durum and is located on the long arm of chromosome 3B.

  1. Cytological and molecular analysis of nonhost resistance in rice to wheat powdery mildew and leaf rust pathogens.

    Science.gov (United States)

    Cheng, Yulin; Yao, Juanni; Zhang, Hongchang; Huang, Lili; Kang, Zhensheng

    2015-07-01

    Cereal powdery mildews caused by Blumeria graminis and cereal rusts caused by Puccinia spp. are constant disease threats that limit the production of almost all important cereal crops. Rice is an intensively grown agricultural cereal that is atypical because of its immunity to all powdery mildew and rust fungi. We analyzed the nonhost interactions between rice and the wheat powdery mildew fungus B. graminis f. sp. tritici (Bgt) and the wheat leaf rust fungus Puccinia triticina (Ptr) to identify the basis of nonhost resistance (NHR) in rice against cereal powdery mildew and rust fungi at cytological and molecular levels. No visible symptoms were observed on rice leaves inoculated with Bgt or Ptr. Microscopic observations showed that both pathogens exhibited aberrant differentiation and significantly reduced penetration frequencies on rice compared to wheat. The development of Bgt and Ptr was also completely arrested at early infection stages in cases of successful penetration into rice leaves. Attempted infection of rice by Bgt and Ptr induced similar defense responses, including callose deposition, accumulation of reactive oxygen species, and hypersensitive response in rice epidermal and mesophyll cells, respectively. Furthermore, a set of defense-related genes were upregulated in rice against Bgt and Ptr infection. Rice is an excellent monocot model for genetic and molecular studies. Therefore, our results demonstrate that rice is a useful model to study the mechanisms of NHR to cereal powdery mildew and rust fungi, which provides useful information for the development of novel and durable strategies to control these important pathogens.

  2. Control of Asian soybean rust with mancozeb, a multi-site fungicide

    Directory of Open Access Journals (Sweden)

    Luís Henrique Carregal Pereira da Silva

    2015-03-01

    Full Text Available An experiment conducted in the field the action of mancozeb, a fungicide of multi-site action was tested, to control soybean rust caused by Phakopsora pachyrhizi. Its performance was compared to that of the mixture cyproconazole (DMI + azoxystrobin (QoI. The soybean cultivar NA 7337 RR was used with a population of 400,000 plants/ha cultivated in 20m2 plots. Treatments consisted of mancozeb levels (1.5 and 2.0 kg/ha applied four, six and eight times. The DMI + QoI mixture was applied three times at 0.3 L/ha + Nimbus. Rust severity was assessed six times in the plots and data were integrated as the area under the disease progress curve (AUDPC. The plots were harvested and grain yield was expressed as kg/ha. Data on AUDPC and yield were subjected to analysis of variance and means compared according to Turkey's test (p = 0.005. Treatments with mancozeb were superior to DMI + QoI mixture both for rust control and grain yield. Four applications of 2.0 k/ha mancozeb were more efficient than three applications of the mixture used as standard. Mancozeb has the potential to be added to fungicide mixtures in the establishment of soybean rust anti-resistance strategy.

  3. Major Gene for Field Stem Rust Resistance Co-Locates with Resistance Gene Sr12 in 'Thatcher' Wheat.

    Science.gov (United States)

    Hiebert, Colin W; Kolmer, James A; McCartney, Curt A; Briggs, Jordan; Fetch, Tom; Bariana, Harbans; Choulet, Frederic; Rouse, Matthew N; Spielmeyer, Wolfgang

    2016-01-01

    Stem rust, caused by Puccinia graminis (Pgt), is a damaging disease of wheat that can be controlled by utilizing effective stem rust resistance genes. 'Thatcher' wheat carries complex resistance to stem rust that is enhanced in the presence of the resistance gene Lr34. The purpose of this study was to examine APR in 'Thatcher' and look for genetic interactions with Lr34. A RIL population was tested for stem rust resistance in field nurseries in Canada, USA, and Kenya. BSA was used to find SNP markers associated with reduced stem rust severity. A major QTL was identified on chromosome 3BL near the centromere in all environments. Seedling testing showed that Sr12 mapped to the same region as the QTL for APR. The SNP markers were physically mapped and the region carrying the resistance was searched for sequences with homology to members of the NB-LRR resistance gene family. SNP marker from one NB-LRR-like sequence, NB-LRR3 co-segregated with Sr12. Two additional populations, including one that lacked Lr34, were tested in field nurseries. NB-LRR3 mapped near the maximum LOD for reduction in stem rust severity in both populations. Lines from a population that segregated for Sr12 and Lr34 were tested for seedling Pgt biomass and infection type, as well as APR to field stem rust which showed an interaction between the genes. We concluded that Sr12, or a gene closely linked to Sr12, was responsible for 'Thatcher'-derived APR in several environments and this resistance was enhanced in the presence of Lr34.

  4. Major Gene for Field Stem Rust Resistance Co-Locates with Resistance Gene Sr12 in 'Thatcher' Wheat.

    Directory of Open Access Journals (Sweden)

    Colin W Hiebert

    Full Text Available Stem rust, caused by Puccinia graminis (Pgt, is a damaging disease of wheat that can be controlled by utilizing effective stem rust resistance genes. 'Thatcher' wheat carries complex resistance to stem rust that is enhanced in the presence of the resistance gene Lr34. The purpose of this study was to examine APR in 'Thatcher' and look for genetic interactions with Lr34. A RIL population was tested for stem rust resistance in field nurseries in Canada, USA, and Kenya. BSA was used to find SNP markers associated with reduced stem rust severity. A major QTL was identified on chromosome 3BL near the centromere in all environments. Seedling testing showed that Sr12 mapped to the same region as the QTL for APR. The SNP markers were physically mapped and the region carrying the resistance was searched for sequences with homology to members of the NB-LRR resistance gene family. SNP marker from one NB-LRR-like sequence, NB-LRR3 co-segregated with Sr12. Two additional populations, including one that lacked Lr34, were tested in field nurseries. NB-LRR3 mapped near the maximum LOD for reduction in stem rust severity in both populations. Lines from a population that segregated for Sr12 and Lr34 were tested for seedling Pgt biomass and infection type, as well as APR to field stem rust which showed an interaction between the genes. We concluded that Sr12, or a gene closely linked to Sr12, was responsible for 'Thatcher'-derived APR in several environments and this resistance was enhanced in the presence of Lr34.

  5. Major Gene for Field Stem Rust Resistance Co-Locates with Resistance Gene Sr12 in ‘Thatcher’ Wheat

    Science.gov (United States)

    Hiebert, Colin W.; Kolmer, James A.; McCartney, Curt A.; Briggs, Jordan; Fetch, Tom; Bariana, Harbans; Choulet, Frederic; Rouse, Matthew N.; Spielmeyer, Wolfgang

    2016-01-01

    Stem rust, caused by Puccinia graminis (Pgt), is a damaging disease of wheat that can be controlled by utilizing effective stem rust resistance genes. ‘Thatcher’ wheat carries complex resistance to stem rust that is enhanced in the presence of the resistance gene Lr34. The purpose of this study was to examine APR in ‘Thatcher’ and look for genetic interactions with Lr34. A RIL population was tested for stem rust resistance in field nurseries in Canada, USA, and Kenya. BSA was used to find SNP markers associated with reduced stem rust severity. A major QTL was identified on chromosome 3BL near the centromere in all environments. Seedling testing showed that Sr12 mapped to the same region as the QTL for APR. The SNP markers were physically mapped and the region carrying the resistance was searched for sequences with homology to members of the NB-LRR resistance gene family. SNP marker from one NB-LRR-like sequence, NB-LRR3 co-segregated with Sr12. Two additional populations, including one that lacked Lr34, were tested in field nurseries. NB-LRR3 mapped near the maximum LOD for reduction in stem rust severity in both populations. Lines from a population that segregated for Sr12 and Lr34 were tested for seedling Pgt biomass and infection type, as well as APR to field stem rust which showed an interaction between the genes. We concluded that Sr12, or a gene closely linked to Sr12, was responsible for ‘Thatcher’-derived APR in several environments and this resistance was enhanced in the presence of Lr34. PMID:27309724

  6. Stripes and superconductivity in cuprate superconductors

    OpenAIRE

    Tranquada, J. M.

    2005-01-01

    One type of order that has been observed to compete with superconductivity in cuprates involves alternating charge and antiferromagnetic stripes. Recent neutron scattering studies indicate that the magnetic excitation spectrum of a stripe-ordered sample is very similar to that observed in superconducting samples. In fact, it now appears that there may be a universal magnetic spectrum for the cuprates. One likely implication of this universal spectrum is that stripes of a dynamic form are pres...

  7. Current distributions in stripe Majorana junctions

    Science.gov (United States)

    Osca, Javier; Llorenç, Serra

    2017-02-01

    We calculate current and density distributions in stripe (2D planar) junctions between normal and Majorana nanowires having a finite ( y) transverse length. In presence of a magnetic field with vertical and in-plane components, the y-symmetry of the charge current distribution in the normal lead changes strongly across the Majorana phase transition: from center-symmetric if a Majorana mode is present to laterally-shifted (as expected by the Hall effect) if the field is tilted such as to destroy the Majorana mode due to the projection rule. We compare quasi-particle and charge distributions of current and density, as well as spin magnetizations. The Majorana mode causes opposite spin accumulations on the transverse sides of the junction and the emergence of a spin current.

  8. Fine Mapping of RppP25, a Southern Rust Resistance Gene in Maize

    Institute of Scientific and Technical Information of China (English)

    Panfeng Zhao; Guobin Zhang; Xiaojun Wu; Na Li; Dianyi Shi; Dengfeng Zhang; Chunfang Ji

    2013-01-01

    Southern rust (Puccinia polysora Underw.) is a major disease that can cause severe yield losses in maize (Zea mays L.).In our previous study,a major gene RppP25 that confers resistance to southern rust was identified in inbred line P25.Here,we report the fine mapping and candidate gene analysis of RppP25from the near-isogenic line F939,which harbors RppP25 in the genetic background of the susceptible inbred line F349.The inheritance of resistance to southern rust was investigated in the BC1F1 and BC3F1 populations,which were derived from a cross between F939 and F349 (as the recurrent parent).The 1:1 segregation ratio of resistance to susceptible plants in these two populations indicated that the resistance is controlled by a single dominant gene.Ten markers,including three simple sequence repeat (SSR) markers and seven insertion/deletion (InDel) markers,were developed in the RppP25 region.RppP25 was delimited to an interval between P091 and M271,with an estimated length of 40 kb based on the physical map of B73.In this region,a candidate gene was identified that was predicted to encode a putative nucleotide-binding site leucine-rich repeat (NBS-LRR) protein.Two co-segregated markers will aid in pyramiding diverse southern rust resistance alleles into elite materials,and thereby improve southern rust resistance worldwide.

  9. If I Rest,I Rust

    Institute of Scientific and Technical Information of China (English)

    Orison; Swett; Marden; 陆小丫

    2003-01-01

    选注者言:流水不腐,户枢不蠹。人的才干又何尝不是如此?If I Rest,I Rust 的标题就让我们玩味再三!思之再三,权译:吾“休”则“锈”。宝剑锋从磨砺出, 梅花香自苦寒来。此言非虚!

  10. Efeito de fungicidas cúpricos, aplicados isoladamente ou em combinação com mancozeb, na expressão de sintomas de fitotoxicidade e controle da ferrugem causada por Puccinia psidii em goiabeira Effect of copper fungicides, sprayed alone or in combination with mancozeb, in expression of phytotoxicity symptoms and rust control caused by Puccinia psidii in guava

    Directory of Open Access Journals (Sweden)

    Antonio de Goes

    2004-08-01

    used in Experiment 1, plus a treatment with tebucunazole in order to evaluate the rust control. In Experiment 1 none of the fungicides tested caused phytotoxicity symptoms and abortion of fruits less than 15 mm in diameter. The fungicides caused higher phytotoxicity in fruits between 25 and 35 mm but not in fruits larger than 40 mm diameter. Copper fungicides combined with mancozeb lead to a slight toxicity, but when applied the mancozeb alone did not lead to phytotoxicity sympton. In The Experiment 2, it was observed that copper fungicides applied alone were efficient to control rust as well as the combination of mancozeb and cuprous oxide or hydroxide and the fungicide tebuconazole.

  11. Stripe Phases in High-Temperature Superconductors

    Science.gov (United States)

    Emery, V. J.; Kivelson, S. A.; Tranquada, J. M.

    1999-08-01

    Stripe phases are predicted and observed to occur in a class of strongly correlated materials describable as doped antiferromagnets, of which the copper-oxide superconductors are the most prominent representatives. The existence of stripe correlations necessitates the development of new principles for describing charge transport and especially superconductivity in these materials.

  12. Stripe phases in high-temperature superconductors.

    Science.gov (United States)

    Emery, V J; Kivelson, S A; Tranquada, J M

    1999-08-03

    Stripe phases are predicted and observed to occur in a class of strongly correlated materials describable as doped antiferromagnets, of which the copper-oxide superconductors are the most prominent representatives. The existence of stripe correlations necessitates the development of new principles for describing charge transport and especially superconductivity in these materials.

  13. Changing the game: using integrative genomics to probe virulence mechanisms of the stem rust pathogen Puccinia graminis f. sp. tritici

    Science.gov (United States)

    The recent resurgence of wheat stem rust caused by new virulent races of Puccinia graminis f. sp. tritici (Pgt) poses a threat to food security. These concerns have catalyzed an extensive global effort towards controlling this disease. Substantial research and breeding programs target the identifica...

  14. Registration of a male fertility restorer oilseed sunflower germplasm HA-R9 resistant to sunflower rust

    Science.gov (United States)

    The sunflower (Helianthus annuus L.) germplasm HA-R9 (Reg. No.xxx, PI 667595) was developed by the USDA-ARS, Sunflower and Plant Biology Research Unit in collaboration with the Agricultural Experiment Station of North Dakota State University and released in January, 2013. Sunflower rust (caused by P...

  15. An automatic de-striping algorithm for Ocean Colour Monitor Imagery

    Science.gov (United States)

    Tripathi, Santosh

    2012-07-01

    OCM-2 Mission is envisaged as the continuity service provider to Oceansat-1 (IRS-P4) with enhanced application potential. Oceansat-2 carries three payloads and Ocean Colour Monitor (OCM-2), is one of them. OCM-2 is a push broom sensor designed with 3730 active detectors. Along track striping caused by poorly characterized detector to detector calibration results in derived ocean colour products that are less useful. OCM-2 has eight bands, in which first two bands intermittently show vertical striping in the radiometrically corrected data. An algorithm based on sequential scale factor estimation is proposed to remove the vertical striping with minimum change (+/- 2 percent) in radiance. This paper outlines an automatic de-striping algorithm (ADM), discusses the improvement, quantifies the percentage change and describes the limitations of the method.

  16. Incomplete resistance to coffee leaf rust (Hemileia vastatrix)

    NARCIS (Netherlands)

    Eskes, T.K.A.B.

    1983-01-01

    Incomplete resistance to coffee leaf rust ( Hemileia vastatrix ) may be of value in obtaining durable resistance, which is of great importance for the perennial coffee crop. Methods were developed to assess incomplete resistance to coffee leaf rust by using illustrated scales ranging from 0 t

  17. Detection, Occurrence, and Survey of Rice Stripe and Black-Streaked Dwarf Diseases in Zhejiang Province, China

    Institute of Scientific and Technical Information of China (English)

    ZHANG Heng-mu; WANG Hua-di; YANG Jian; Michael J. ADAMS; CHEN Jian-ping

    2013-01-01

    The major viral diseases that occur on rice plants in Zhejiang Province, eastern China, are stripe and rice black-streaked dwarf diseases. Rice stripe disease is only caused by rice stripe tenuivirus (RSV), while rice black-streaked dwarf disease can be caused by rice black-streaked dwarf fijivirus (RBSDV) and/or southern rice black-streaked dwarf fijivirus (SRBSDV). Here we review the characterization of these viruses, methods for their detection, and extensive surveys showing their occurrence and spread in the province.

  18. Ricoseius loxocheles, a phytoseiid mite that feeds on coffee leaf rust.

    Science.gov (United States)

    Oliveira, Cleber M; Ferreira, João A M; Oliveira, Rafael M; Santos, Francisco O; Pallini, Angelo

    2014-10-01

    One of the most important diseases of coffee plants is the coffee leaf rust fungus Hemileia vastatrix Berkeley and Broome (Uredinales). It can cause 30 % yield loss in some varieties of Coffea arabica (L.). Besides fungus, the coffee plants are attacked by phytophagous mites. The most common species is the coffee red mite, Oligonychus ilicis McGregor (Acari: Tetranychidae). Predatory mites of the Phytoseiidae family are well-known for their potential to control herbivorous mites and insects, but they can also develop and reproduce on various other food sources, such as plant pathogenic fungi. In a field survey, we found Ricoseius loxocheles (De Leon) (Acari: Phytoseiidae) on the necrotic areas caused by the coffee leaf rust fungus during the reproductive phase of the pathogen. We therefore assessed the development, survivorship and reproduction of R. loxocheles feeding on coffee leaf rust fungus and measured predation and oviposition of this phytoseiid having coffee red mite as prey under laboratory conditions. The mite fed, survived, developed and reproduced successfully on this pathogen but it was not able to prey on O. ilicis. Survival and oviposition with only prey were the same as without food. This phytoseiid mite does not really use O. ilicis as food. It is suggested that R. loxocheles is one phytoseiid that uses fungi as a main food source.

  19. Rust fungi on Annonaceae: the genus Sphaerophragmium.

    Science.gov (United States)

    Beenken, Ludwig; Berndt, Reinhard

    2010-01-01

    Seven species of the rust genus Sphaerophragmium occur on members of the tropical plant family Annonaceae. Uropyxis gerstneri is recombined to S. gerstneri. A new species, S. xylopiae, is described from Xylopia acutiflora. The host plant of S. boanense is identified as Mitrella sp. Sphaerophragmium pulchrum is transferred to Dicheirinia. The anatomy of telia with teliospores and parasitizing mycelium is described and illustrated in detail. A new type of M-haustorium, which emanates laterally from intracellular hypha, is detected in S. monodorae. An identification key is given.

  20. Are stripes beneficial? Dazzle camouflage influences perceived speed and hit rates.

    Directory of Open Access Journals (Sweden)

    Bettina von Helversen

    Full Text Available In the animal kingdom, camouflage refers to patterns that help potential prey avoid detection. Mostly camouflage is thought of as helping prey blend in with their background. In contrast, disruptive or dazzle patterns protect moving targets and have been suggested as an evolutionary force in shaping the dorsal patterns of animals. Dazzle patterns, such as stripes and zigzags, are thought to reduce the probability with which moving prey will be captured by impairing predators' perception of speed. We investigated how different patterns of stripes (longitudinal-i.e., parallel to movement direction-and vertical-i.e., perpendicular to movement direction affect the probability with which humans can hit moving objects and if differences in hitting probability are caused by a misperception of speed. A first experiment showed that longitudinally striped objects were hit more often than unicolored objects. However, vertically striped objects did not differ from unicolored objects. A second study examining the link between perceived speed and hitting probability showed that longitudinally and vertically striped objects were both perceived as moving faster and were hit more often than unicolored objects. In sum, our results provide evidence that striped patterns disrupt the perception of speed, which in turn influences how often objects are hit. However, the magnitude and the direction of the effects depend on additional factors such as speed and the task setup.

  1. Ultrafast charge localization in a stripe-phase nickelate

    Energy Technology Data Exchange (ETDEWEB)

    Coslovich, Giacomo; Huber, Bernhard; Lee, Wei-Sheng; Sasagawa, Takao; Hussain, Zahid; Bechtel, Hans A.; Martin, Michael C.; Shen, Zhi-Xun; W. Schoenlein, Robert; A. Kaindl, Robert

    2013-08-30

    Self-organized electronically-ordered phases are a recurring feature in correlated materials, resulting in e.g. fluctuating charge stripes whose role in high-Tc superconductivity is under debate. However, the relevant cause-effect relations between real-space charge correlations and low-energy excitations remain hidden in time-averaged studies. Here, we reveal ultrafast charge localization and lattice vibrational coupling as dynamical precursors of stripe formation in the model compound La1.75Sr0.25NiO4, using ultrafast and equilibrium mid-infrared spectroscopy. The opening of a pseudogap at a crossover temperature T* far above long-range stripe formation establishes the onset of electronic localization which is accompanied by an enhanced Fano asymmetry of Ni-O stretch vibrations. Ultrafast excitation triggers a sub-picosecond dynamics exposing the synchronous modulation of electron-phonon coupling and charge localization. These results illuminate the role of localization in forming the pseudogap in nickelates, opening a path to understanding this mysterious phase in a broad class of complex oxides.

  2. Assessing the Effects of Suomi NPP VIIRS M15/M16 Detector Radiometric Stability and Relative Spectral Response Variation on Striping

    Directory of Open Access Journals (Sweden)

    Zhuo Wang

    2016-02-01

    Full Text Available Modern satellite radiometers have many detectors with different relative spectral response (RSR. Effect of RSR differences on striping and the root cause of striping in sensor data record (SDR radiance and brightness temperature products have not been well studied. A previous study used MODTRAN radiative transfer model (RTM to analyze striping. In this study, we make efforts to find the possible root causes of striping. Line-by-Line RTM (LBLRTM is used to evaluate the effect of RSR difference on striping and the atmospheric dependency for VIIRS bands M15 and M16. The results show that previous study using MODTRAN is repeatable: the striping is related to the difference between band-averaged and detector-level RSR, and the BT difference has some atmospheric dependency. We also analyzed VIIRS earth view (EV data with several striping index methods. Since the EV data is complex, we further analyze the onboard calibration data. Analysis of Variance (ANOVA test shows that the noise along track direction is the major reason for striping. We also found evidence of correlation between solar diffuser (SD and blackbody (BB for detector 1 in M15. Digital Count Restoration (DCR and detector instability are possibly related to the striping in SD and EV data, but further analysis is needed. These findings can potentially lead to further SDR processing improvements.

  3. Incorporation of Monovalent Cations in Sulfate Green Rust

    DEFF Research Database (Denmark)

    Christiansen, B. C.; Dideriksen, K.; Katz, A.;

    2014-01-01

    Green rust is a naturally occurring layered mixed-valent ferrous-ferric hydroxide, which can react with a range of redox-active compounds. Sulfate-bearing green rust is generally thought to have interlayers composed of sulfate and water. Here, we provide evidence that the interlayers also contain...... with water showed that Na+ and K+ were structurally fixed in the interlayer, whereas Rb+ and Cs+ could be removed, resulting in a decrease in the basal layer spacing. The incorporation of cations in the interlayer opens up new possibilities for the use of sulfate green rust for exchange reactions with both...

  4. STRIPES AND SUPERCONDUCTIVITY IN CUPRATE SUPERCONDUCTORS

    Energy Technology Data Exchange (ETDEWEB)

    TRANQUADA, J.M.

    2005-08-22

    One type of order that has been observed to compete with superconductivity in cuprates involves alternating charge and antiferromagnetic stripes. Recent neutron scattering studies indicate that the magnetic excitation spectrum of a stripe-ordered sample is very similar to that observed in superconducting samples. In fact, it now appears that there may be a universal magnetic spectrum for the cuprates. One likely implication of this universal spectrum is that stripes of a dynamic form are present in the superconducting samples. On cooling through the superconducting transition temperature, a gap opens in the magnetic spectrum, and the weight lost at low energy piles up above the gap; the transition temperature is correlated with the size of the spin gap. Depending on the magnitude of the spin gap with respect to the magnetic spectrum, the enhanced magnetic scattering at low temperature can be either commensurate or incommensurate. Connections between stripe correlations and superconductivity are discussed.

  5. Stripes and superconductivity in cuprate superconductors

    Science.gov (United States)

    Tranquada, J. M.

    2005-08-01

    One type of order that has been observed to compete with superconductivity in cuprates involves alternating charge and antiferromagnetic stripes. Recent neutron scattering studies indicate that the magnetic excitation spectrum of a stripe-ordered sample is very similar to that observed in superconducting samples. In fact, it now appears that there may be a universal magnetic spectrum for the cuprates. One likely implication of this universal spectrum is that stripes of a dynamic form are present in the superconducting samples. On cooling through the superconducting transition temperature, a gap opens in the magnetic spectrum, and the weight lost at low energy piles up above the gap; the transition temperature is correlated with the size of the spin gap. Depending on the magnitude of the spin gap with respect to the magnetic spectrum, the enhanced magnetic scattering at low temperature can be either commensurate or incommensurate. Connections between stripe correlations and superconductivity are discussed.

  6. White pine blister rust resistance in limber pine: evidence for a major gene.

    Science.gov (United States)

    Schoettle, A W; Sniezko, R A; Kegley, A; Burns, K S

    2014-02-01

    Limber pine (Pinus flexilis) is being threatened by the lethal disease white pine blister rust caused by the non-native pathogen Cronartium ribicola. The types and frequencies of genetic resistance to the rust will likely determine the potential success of restoration or proactive measures. These first extensive inoculation trials using individual tree seed collections from >100 limber pine trees confirm that genetic segregation of a stem symptom-free trait to blister rust is consistent with inheritance by a single dominant resistance (R) gene, and the resistance allele appears to be distinct from the R allele in western white pine. Following previous conventions, we are naming the R gene for limber pine "Cr4." The frequency of the Cr4 allele across healthy and recently invaded populations in the Southern Rocky Mountains was unexpectedly high (5.0%, ranging from 0 to 13.9%). Cr4 is in equilibrium, suggesting that it is not a product of a recent mutation and may have other adaptive significance within the species, possibly related to other abiotic or biotic stress factors. The identification of Cr4 in native populations of limber pine early in the invasion progress in this region provides useful information for predicting near-term impacts and structuring long-term management strategies.

  7. Wheat Rust Information Resources - Integrated tools and data for improved decision making

    DEFF Research Database (Denmark)

    Hodson, David; Hansen, Jens Grønbech; Lassen, Poul

    . Integration of the CIMMYT Wheat Atlas and the Genetic Resources Information System (GRIS) databases provides a rich resource on wheat cultivars and their resistance to important rust races. Data access is facilitated via dedicated web portals such as Rust Tracker (www.rusttracker.org) and the Global Rust...... an integrated set of datasets on both pathogen and host at the global scale. The Global Cereal Rust Monitoring System (GCRMS), created under the Durable Rust resistance in Wheat (DRRW) project, represents a unique and increasingly comprehensive resource of rust information. A suite of tools are now available...... giving access to an unprecedented set of data for rust surveys, alternate hosts (barberry), rust pathotypes, trap nurseries and resistant cultivars. Standardized protocols for data collection have permitted the development of a comprehensive data management system, named the Wheat Rust Toolbox...

  8. Zn-Doping Dependence of Stripe Order in La1.905Ba0.095CuO4

    Energy Technology Data Exchange (ETDEWEB)

    Hucker, M.; Zimmermann, M.v.; Xu, Z.J.; Wen, J.S.; Gu, G.D.; Tian, W.; Zarestky, J.; Tranquada, J.M.

    2011-04-01

    The effect of Zn-doping on the stripe order in La{sub 1.905}Ba{sub 0.095}CuO{sub 4} has been studied by means of x-ray and neutron diffraction as well as magnetization measurements. While 1% Zn leads to an increase of the spin stripe order, it unexpectedly causes a wipe out of the visibility of the charge stripe order. A magnetic field of 10 Tesla applied along the c-axis has no reversing effect on the charge order. We compare this observation with the Zn-doping dependence of the crystal structure, superconductivity, and normal state magnetism.

  9. Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factors

    Directory of Open Access Journals (Sweden)

    Antoine ePersoons

    2014-09-01

    Full Text Available Melampsora larici-populina is a fungal pathogen responsible for foliar rust disease on poplar trees, which causes damage to forest plantations worldwide, particularly in Northern Europe. The reference genome of the isolate 98AG31 was previously sequenced using a whole genome shotgun strategy, revealing a large genome of 101 megabases containing 16,399 predicted genes, which included secreted protein genes representing poplar rust candidate effectors. In the present study, the genomes of 15 isolates collected over the past 20 years throughout the French territory, representing distinct virulence profiles, were characterized by massively parallel sequencing to assess genetic variation in the poplar rust fungus. Comparison to the reference genome revealed striking structural variations. Analysis of coverage and sequencing depth identified large missing regions between isolates related to the mating type loci. More than 611,824 single-nucleotide polymorphism (SNP positions were uncovered overall, indicating a remarkable level of polymorphism. Based on the accumulation of non-synonymous substitutions in coding sequences and the relative frequencies of synonymous and non-synonymous polymorphisms (i.e. PN/PS, we identify candidate genes that may be involved in fungal pathogenesis. Correlation between non-synonymous SNPs in genes encoding secreted proteins and pathotypes of the studied isolates revealed candidate genes potentially related to virulences 1, 6 and 8 of the poplar rust fungus.

  10. Genes for "Reverse" fruit striping in squash (Cucurbita pepo).

    Science.gov (United States)

    Paris, Harry S

    2009-01-01

    Longitudinal striping is a common fruit color pattern in Cucurbita pepo and is conferred by any of several alleles at the light coloration-1 locus. Normally, dark stripes appear over the fruit surface areas between the 10 main subepidermal vein tracts with the lighter background color over and adjacent to these vein tracts. Less commonly, the striping is "reversed," that is, lighter than the background color. The present work was conducted to elucidate the mode of inheritance of reverse striping. The results indicated that reverse striping is conferred by the complementary interaction of an allele for striping with a heretofore unidentified allele at the light coloration-2 locus which is hereby designated l-2(R). Fruits of plants carrying an allele for striping and that are homozygous for l-2(R) have completely reversed striping, whereas those heterozygous for l-2(R) have striping that is completely normal or that is partially normal and partially reversed.

  11. Corrosion in drinking water pipes: the importance of green rusts.

    Science.gov (United States)

    Swietlik, Joanna; Raczyk-Stanisławiak, Urszula; Piszora, Paweł; Nawrocki, Jacek

    2012-01-01

    Complex crystallographic composition of the corrosion products is studied by diffraction methods and results obtained after different pre-treatment of samples are compared. The green rusts are found to be much more abundant in corrosion scales than it has been assumed so far. The characteristic and crystallographic composition of corrosion scales and deposits suspended in steady waters were analyzed by X-ray diffraction (XRD). The necessity of the examination of corrosion products in the wet conditions is indicated. The drying of the samples before analysis is shown to substantially change the crystallographic phases originally present in corrosion products. On sample drying the unstable green rusts is converted into more stable phases such as goethite and lepidocrocite, while the content of magnetite and siderite decreases. Three types of green rusts in wet materials sampled from tubercles are identified. Unexpectedly, in almost all corrosion scale samples significant amounts of the least stable green rust in chloride form was detected. Analysis of corrosion products suspended in steady water, which remained between tubercles and possibly in their interiors, revealed complex crystallographic composition of the sampled material. Goethite, lepidocrocite and magnetite as well as low amounts of siderite and quartz were present in all samples. Six different forms of green rusts were identified in the deposits separated from steady waters and the most abundant was carbonate green rust GR(CO(3)(2-))(I).

  12. Relationship between the specific surface area of rust and the electrochemical behavior of rusted steel in a wet-dry acid corrosion environment

    Science.gov (United States)

    Liu, Wei; Zhao, Qing-he; Li, Shuan-zhu

    2017-01-01

    The relationship between the specific surface area (SSA) of rust and the electrochemical behavior of rusted steel under wet-dry acid corrosion conditions was investigated. The results showed that the corrosion current density first increased and then decreased with increasing SSA of the rust during the corrosion process. The structure of the rust changed from single-layer to double-layer, and the γ-FeOOH content decreased in the inner layer of the rust with increasing corrosion time; by contrast, the γ-FeOOH content in the outer layer was constant. When the SSA of the rust was lower than the critical SSA corresponding to the relative humidity during the drying period, condensed water in the micropores of the rust could evaporate, which prompted the diffusion of O2 into the rust and the following formation process of γ-FeOOH, leading to an increase of corrosion current density with increasing corrosion time. However, when the SSA of the rust reached or exceeded the critical SSA, condensate water in the micro-pores of the inner layer of the rust could not evaporate which inhibited the diffusion of O2 and decreased the γ-FeOOH content in the inner rust, leading to a decrease of corrosion current density with increasing corrosion time.

  13. METHODS OF OBTAINING LONGITUDINAL STRIPES LAYOUTS

    Directory of Open Access Journals (Sweden)

    OANA Dorina

    2014-05-01

    Full Text Available From the technological point of view it is necessary that the phase of warping to be done two or three multiple warp, which results in two or three rolls of the warp final will meet only the warping. To achieve longitudinal striped fabric spinning machines is necessary to have all tensioning mechanism dispensing rolls which requires their special construction. The homogeneity of the fabric from the point of view of the warp yarns tension must be ensured by synchronizing operation of the tensioning two cutting mechanisms of the two reels on which the wires are wound with a degree of waving and thus the fuel consumption at the different weaving. It is recommended that the design be adopted average float bonds, such that the wires can be wrapped around more than two final reels. In terms of manufacturing technology with longitudinal stripes fabrics have a more complicated and expensive technology to cross-striped fabrics for the manufacture of which technology is simplified. Cross-striped fabrics containing groups of warp threads those linked to floating average is materially different. Due to this degree of crimping of wires in the stripes with different bonds makes their contract to be different, having a direct influence on the wires consumption. The different contraction of wire weaving makes warp yarn length, contained in a linked reports are so different that it requires winding wires with different bonds also differing on the final rolls.

  14. Evaporation of elongated droplets on chemically stripe-patterned surfaces

    NARCIS (Netherlands)

    Jansen, H.P.; Zandvliet, H.J.W.; Kooij, E.S.

    2015-01-01

    We investigate the evaporation of elongated droplets on chemically striped patterned surfaces. Variation of elongation is achieved by depositing droplets on surfaces with varying ratios of hydrophobic and hydrophilic stripe widths. Elongated droplets evaporate faster than more spherical droplets. Bo

  15. Stripe artifact elimination based on nonsubsampled contourlet transform for light sheet fluorescence microscopy

    Science.gov (United States)

    Liang, Xiao; Zang, Yali; Dong, Di; Zhang, Liwen; Fang, Mengjie; Yang, Xin; Arranz, Alicia; Ripoll, Jorge; Hui, Hui; Tian, Jie

    2016-10-01

    Stripe artifacts, caused by high-absorption or high-scattering structures in the illumination light path, are a common drawback in both unidirectional and multidirectional light sheet fluorescence microscopy (LSFM), significantly deteriorating image quality. To circumvent this problem, we present an effective multidirectional stripe remover (MDSR) method based on nonsubsampled contourlet transform (NSCT), which can be used for both unidirectional and multidirectional LSFM. In MDSR, a fast Fourier transform (FFT) filter is designed in the NSCT domain to shrink the stripe components and eliminate the noise. Benefiting from the properties of being multiscale and multidirectional, MDSR succeeds in eliminating stripe artifacts in both unidirectional and multidirectional LSFM. To validate the method, MDSR has been tested on images from a custom-made unidirectional LSFM system and a commercial multidirectional LSFM system, clearly demonstrating that MDSR effectively removes most of the stripe artifacts. Moreover, we performed a comparative experiment with the variational stationary noise remover and the wavelet-FFT methods and quantitatively analyzed the results with a peak signal-to-noise ratio, showing an improved noise removal when using the MDSR method.

  16. The IAC stripe82 legacy project

    Science.gov (United States)

    Román, Javier; Fliri, Juergen; Trujillo, Ignacio

    2017-03-01

    We present new deep co-adds of data taken within Stripe 82 of the Sloan Digital Sky Survey (SDSS), especially stacked to reach the faintest surface brightness limits of this data set. Our reduction puts special emphasis on preserving the characteristics of the background (sky + diffuse light) in the input images using a non-aggressive sky subtraction strategy, resulting in an exquisite quality on extremely faint structures. The IAC Stripe 82 co-adds offer a rather unique possibility to study the low surface brightness Universe like stellar haloes and disc truncations, low surface brightness, tidal galactic interactions, extremely faint dwarf galaxies, intra-cluster light or diffuse light from galactic dust. The imaging data is publicly available at http://www.iac.es/proyecto/stripe82/.

  17. Spin Dynamics in an Ordered Stripe Phase

    Science.gov (United States)

    Tranquada, J. M.; Wochner, P.; Buttrey, D. J.

    1997-09-01

    Inelastic neutron scattering has been used to measure the low-energy spin excitations in the ordered charge-stripe phase of La2NiO4+δ with δ = 0.133. Spin-wave-like excitations disperse away from the incommensurate magnetic superlattice points with a velocity ~60% of that in the δ = 0 compound. Incommensurate inelastic peaks remain well resolved up to at least twice the magnetic ordering temperature. Paramagnetic scattering from a δ = 0.105 sample, which has a Néel-ordered ground state, shows anomalies suggestive of incipient stripe correlations. Similarities between these results and measurements on superconducting cuprates are discussed.

  18. Contact angle hysteresis on superhydrophobic stripes.

    Science.gov (United States)

    Dubov, Alexander L; Mourran, Ahmed; Möller, Martin; Vinogradova, Olga I

    2014-08-21

    We study experimentally and discuss quantitatively the contact angle hysteresis on striped superhydrophobic surfaces as a function of a solid fraction, ϕS. It is shown that the receding regime is determined by a longitudinal sliding motion of the deformed contact line. Despite an anisotropy of the texture the receding contact angle remains isotropic, i.e., is practically the same in the longitudinal and transverse directions. The cosine of the receding angle grows nonlinearly with ϕS. To interpret this we develop a theoretical model, which shows that the value of the receding angle depends both on weak defects at smooth solid areas and on the strong defects due to the elastic energy of the deformed contact line, which scales as ϕS(2)lnϕS. The advancing contact angle was found to be anisotropic, except in a dilute regime, and its value is shown to be determined by the rolling motion of the drop. The cosine of the longitudinal advancing angle depends linearly on ϕS, but a satisfactory fit to the data can only be provided if we generalize the Cassie equation to account for weak defects. The cosine of the transverse advancing angle is much smaller and is maximized at ϕS ≃ 0.5. An explanation of its value can be obtained if we invoke an additional energy due to strong defects in this direction, which is shown to be caused by the adhesion of the drop on solid sectors and is proportional to ϕS(2). Finally, the contact angle hysteresis is found to be quite large and generally anisotropic, but it becomes isotropic when ϕS ≤ 0.2.

  19. Potential impacts of ambient ozone on wheat rust diseases and the role of plant ozone sensitivity

    Science.gov (United States)

    The resurgence of rust diseases and the continued rise in tropospheric ozone (O3) levels have the potential to limit global wheat production. We conducted a series of experiments to understand the potential interactions between these two stress factors. Both stem rust and leaf rust were increased o...

  20. Determining the order of resistance genes against Stagonospora nodorum blotch, Fusarium head blight and stem rust on wheat chromosome 3BS

    Science.gov (United States)

    Fungal diseases of wheat occur every year in the U.S., leading to significant grain yield losses. Stagonospora nodorum blotch (SNB), Fusarium head blight (FHB) and stem rust (SR) are caused by the fungi Stagonospora nodorum, Fusarium graminearum and Puccinia graminis, respectively. These leaf and he...

  1. Rph22: mapping of a novel leaf rust resistance gene introgressed from the non-host Hordeum bulbosum L. into cultivated barley (Hordeum vulgare L.)

    NARCIS (Netherlands)

    Johnston, P.A.; Niks, R.E.; Meiyalaghan, V.; Blanchet, E.; Pickering, R.

    2013-01-01

    A resistance gene (Rph22) to barley leaf rust caused by Puccinia hordei was introgressed from the non-host species Hordeum bulbosum into cultivated barley. The H. bulbosum introgression in line ‘182Q20’ was located to chromosome 2HL using genomic in situ hybridisation (GISH). Using molecular markers

  2. Stripe glasses in ferromagnetic thin films

    Science.gov (United States)

    Principi, Alessandro; Katsnelson, Mikhail I.

    2016-02-01

    Domain walls in magnetic multilayered systems can exhibit a very complex and fascinating behavior. For example, the magnetization of thin films of hard magnetic materials is in general perpendicular to the thin-film plane, thanks to the strong out-of-plane anisotropy, but its direction changes periodically, forming an alternating spin-up and spin-down stripe pattern. The latter is stabilized by the competition between the ferromagnetic coupling and dipole-dipole interactions, and disappears when a moderate in-plane magnetic field is applied. It has been suggested that such a behavior may be understood in terms of a self-induced stripe glassiness. In this paper we show that such a scenario is compatible with the experimental findings. The strong out-of-plane magnetic anisotropy of the film is found to be beneficial for the formation of both stripe-ordered and glassy phases. At zero magnetic field the system can form a glass only in a narrow interval of fairly large temperatures. An in-plane magnetic field, however, shifts the glass transition towards lower temperatures, therefore enabling it at or below room temperature. In good qualitative agreement with the experimental findings, we show that a moderate in-plane magnetic field of the order of 50 mT can lead to the formation of defects in the stripe pattern, which sets the onset of the glass transition.

  3. Post-epizootic chronic dolphin morbillivirus infection in Mediterranean striped dolphins Stenella coeruleoalba.

    Science.gov (United States)

    Soto, Sara; Alba, Ana; Ganges, Llilianne; Vidal, Enric; Raga, Juan Antonio; Alegre, Ferrán; González, Beatriz; Medina, Pascual; Zorrilla, Irene; Martínez, Jorge; Marco, Alberto; Pérez, Mónica; Pérez, Blanca; Pérez de Vargas Mesas, Ana; Martínez Valverde, Rosa; Domingo, Mariano

    2011-10-06

    Dolphin morbillivirus (DMV) has caused 2 epizootics with high mortality rates on the Spanish Mediterranean coast, in 1990 and 2006-07, mainly affecting striped dolphins Stenella coeruleoalba. Following the first epizootic unusual DMV infections affecting only the central nervous system of striped dolphins were found, with histological features similar to subacute sclerosing panencephalitis and old dog encephalitis, the chronic latent localised infections caused by defective forms of measles virus and canine distemper virus, respectively. Between 2008 and 2010, monitoring by microscopic and immunohistochemical (IHC) studies of 118 striped dolphins stranded along Catalonia, the Valencia Region and Andalusia showed similar localised DMV nervous system infections in 25.0, 28.6 and 27.4% of cases, respectively, with no significant differences among regions or sex. The body length of DMV-infected dolphins was statistically greater than that of non-infected dolphins (196.5 vs. 160.5 cm; p dolphins with positive IHC-DMV had positive PCR results. All 6 cases were positive with the 78 bp RT-PCR. These findings contraindicate the use of the 429 bp RT-PCR protocol based on the P gene to detect this specific form of DMV. DMV localised nervous infection constitutes the most relevant single cause of stranding and death in Mediterranean striped dolphins in the years following a DMV epizootic, and it might even overwhelm the effects of the epizootic itself, at least in 2007.

  4. Diagonal stripes in the spin glass phase of cuprates

    Energy Technology Data Exchange (ETDEWEB)

    Seibold, G., E-mail: goetz@physik.tu-cottbus.d [Institut fuer Physik, BTU Cottbus, Post Box 101344, 03013 Cottbus (Germany); Lorenzana, J. [SMC-INFM-CNR and Dipartimento di Fisica, Universita di Roma ' La Sapienza' , P.le Aldo Moro 5, I-00185 Roma (Italy)

    2010-12-15

    Based on the unrestricted Gutzwiller approximation we study the possibility that the diagonal incommensurate spin scattering in the spin glass phase of lanthanum cuprates originates from stripe formation. Similar to the metallic phase two types of diagonal stripe structures appear to be stable: (a) site-centered textures which have one hole per site along the stripe and (b) ferromagnetic stair-case structures which are the diagonal equivalent to bond-centered stripes in the metallic phase and which on average have a filling of 3/4 holes per stripe site. We give a detailed analysis of the stability of both diagonal textures with regard to the vertical ones.

  5. Noise-induced striped trajectories of Rossler systems

    Institute of Scientific and Technical Information of China (English)

    Huang Zhi-hua; Dong Ya-Li

    2007-01-01

    In the paper,the generation of striped trajectories in phase space by noise-injection is considered. With suitable amplitudes of noise,the steady-state system orbits appear in rectangular striped shape.The relationship between the shape(including the range and the number of stripes)and some parameters is discussed.The result shows that noise can also generate the striped shape effectively and simply,which is similar to the newly-discovered striped pattern generated by controlled Rossler systems.

  6. Selection of Arabic coffee progenies with rust resistance

    Directory of Open Access Journals (Sweden)

    Gustavo Hiroshi Sera

    2014-07-01

    Full Text Available The aim of this study was to select high-yielding coffee progenies with resistance to coffee leaf rust for the State of Paraná (Brazil. Field experiments in a randomized block design were carried out in Itaguajé and Congonhinhas. Yield, vegetative vigor and rust resistance of nine progenies of Arabic coffee and three check cultivars were evaluated. Many genotypes derived from “Sarchimor” and “Catucaí” were susceptible. Three coffee genotypes of Sarchimor germplasm and the F6 generation of genotype “Catuaí x (Catuaí x BA-10 coffee” were selected to advance generations and are promising to become new cultivars for being higher-yielding than ‘IAPAR 59’ and ‘Tupi IAC 1669-33’ and having a large number of plants with complete rust resistance.

  7. Introgression molecular analysis of a leaf rust resistance gene from Coffea liberica into C. arabica L.

    Science.gov (United States)

    Prakash, N S; Marques, D V; Varzea, V M P; Silva, M C; Combes, M C; Lashermes, P

    2004-10-01

    Leaf rust caused by the fungus Hemileia vastatrix is the most devastating disease of arabica coffee ( Coffea arabica). Therefore, developing leaf rust-resistant varieties has been a breeding objective of the highest priority in many countries. The purpose of the present work was to gain insight into the mechanism of introgression into C. arabica of a leaf rust resistance gene from C. liberica (i.e. S(H)3 resistance factor) and to identify associated molecular markers. An F(2) progeny (i.e. 101 individuals) derived from a cross between Matari, an arabica accession and liberica-introgressed line S.288, was evaluated for resistance against three different races of H. vastatrix. The progeny segregated for the S(H)3 gene in a 3:1 ratio, as expected for a single dominant gene. Amplified fragment length polymorphism analysis of a population subset using 80 different primer combinations revealed that at least half of the total polymorphism observed in the population is associated with introgression of C. liberica chromosome fragments. Furthermore, 15 primer combinations generating candidate marker bands associated with the S(H)3 resistance gene were used to analyse the whole F(2) population. A total of 34 marker bands originating from S.288 and attributable to introgression were scored. None exhibited segregation distortion. Linkage analysis revealed only three distinct introgressed fragments corresponding to a total length of 52.8 cM. Twenty-one markers were strongly associated (LOD score >14) with the S(H)3 gene and were grouped together in a single linkage group of 6.3 cM. The results are discussed in relation to the efficient use of genetic resources in arabica breeding.

  8. Before the Tiger Stripes: A History of Fracturing in the South Polar Terrain of Enceladus

    Science.gov (United States)

    Patthoff, D. A.; Kattenhorn, S. A.

    2009-12-01

    intersect older and well-defined fractures. The intersections also appear to correlate with the plume source locations, which may represent focused, higher-flow regions even if the whole tiger stripe length is generally eruptive. The systematic nature of the fracture sets, combined with the temporal change in orientations, requires whole-scale reorientation of the SPT relative to the extant stress field. Given the large amount of rotation, it is unlikely that the SPT rotated independently of the rest of the ice shell. We suggest that nonsynchronous rotation (NSR) may be the primary cause of fracturing in the SPT. NSR has been proposed to explain curvilinear fractures on other icy moons, such as Europa. If this is the case for Enceladus, it may hint at the presence of a global liquid ocean beneath the surface that decouples slowly rotating ice shell from the silicate interior. If the shell slowly rotated eastward, distinct fracture sets may have formed at different points in time in the SPT, superimposed on the relatively older, rotated sets. Although NSR may account for a temporal rotation of the stress field, some other process presumably is responsible for the localization of geologic activity in the SPT, such as a thermal plume in the ice beneath the south pole.

  9. Genetic analysis and SSR mapping of stem rust resistance gene from wheat mutant D51

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Wheat (Triticum aestivum L.) stem rust caused by Puccinia graminis f.sp.tritici is one of the main diseases of wheat worldwide.Wheat mutant line D51,which forms a highly susceptive cultivar 'L6239' to the three races notated and cultured with immature embryos,shows resistance to prevailing races 21C3CPH,21C3CKH,and 21C3CTR of P.graminis f.sp.tritici in China.In this study,the number and the expression stages of the resistance genes in mutant D51 were studied using inoculation identification and microsatellite (SSR) marker analysis.Two F1 populations from the crosses of D51×L6239 (60 individuals) and D51 × Chinese Spring (60 individuals),their F2 populations (185 and 175 individuals respectively) at the seedling stage,and one F2 population derived from the cross of D51×L6239 (194 individuals) at the adult stage were inoculated with pathogen race 21C3CPH to test for resistance.All F1 individuals of the two crosses were immune to stem rust at both seedling and adult stages.The response pattern of the three F2 populations showed that the R:S segregation ratio was 3:1,suggesting that the stem rust resistance of D51 is controlled by a single dominant gene,and is expressed during the entire growth period.The identification of the stem rust resistance by the F3 progeny test confirmed the credibility of the F2 population test.Segregating populations and small population analyses were used to identify chromosomal regions and molecular markers linked to the gene by the SSR marker method.A total of 675 SSR markers and 185 individuals of the D51 x L6239 F2 population were used to search genetically linked markers to the target gene.Using Mapmaker 3.0 and Map-draw with Kosambi's function and other options set at default values,molecular mapping revealed that the gene was located on chromosome 5DS,linked with and flanked by two SSR markers,Xgwml90 and Xwmc150,at 18.58 and 21.33 cM,respectively.It has been reported that only one stem rust resistant gene,Sr30,is located on the

  10. Population genetic structure of Melampsora larici-epitea, a willow leaf rust fungus

    Energy Technology Data Exchange (ETDEWEB)

    Samils, B. [Swedish Univ. of Agricultural Sciences, Uppsala (Sweden). Dept. of Plant Biology

    2001-07-01

    The genetic structure of a pathogen population reflects the pathogen's evolutionary history and its potential to evolve. Such information can contribute both to resistance breeding efforts and to development of disease-control strategies. In this thesis, the population-genetic structure of one of the most damaging parasites for short-rotation coppice willow (Salix spp.), the leaf rust fungus Melampsora larici-epitea, was analysed using AFLP markers. Analysis of molecular variance (AMOVA) and F-statistics indicated large amounts of genetic variation within Swedish M. larici-epitea populations, and little geographic differentiation, probably reflecting frequent sexual reproduction (recombination) and substantial spore migration. The proximity of European larch (Larix), which is the alternate host and the place for sexual reproduction of M. larici-epitea, had no apparent effect on the genetic structure of Swedish populations in that genotypic diversity was high both with and without adjacent larches. However, disease epidemics might start earlier where larch and willow grow in proximity. A leaf rust fungus with markedly different AFLP fingerprints was found on S. viminalis in southern Sweden. Although morphologically similar, this rust was genetically distant from M. larici-epitea, as well as from the stem-infecting form of Melampsora on willow, based on this study. Analysing also the genetic composition of M. larici-epitea populations in a host-mixture trial in Northern Ireland, the high clonality of these populations, and loci in nonrandom association, as is typical for populations with predominant asexual reproduction, was in contrast with Swedish populations. Possible causes include seasonal population bottlenecks (connected with the sexual phase on larch) and the persistence of clonal lineages across years. Differences in genetic composition between M. larici-epitea populations on two S. viminalis clones were detected in monoculture and in mixed stands. A

  11. Molecular cloning and characterization of two hypersensitive induced reaction genes from wheat infected by stripe rust pathogen

    Science.gov (United States)

    A novel gene induced during hypersensitive reaction (HIR) in wheat was identified using in silico cloning and designated as TaHIR2. The TaHIR2 gene was deduced to encode a 284-amino acid protein, whose molecular mass and isoelectric point (pI) were 31.05 kD and 5.18, respectively. Amino acid sequenc...

  12. Characterization of a wheat HSP70 gene and its expression in response to stripe rust infection and abiotic stresses

    NARCIS (Netherlands)

    Duan, Y.H.; Guo, J.; Ding, K.; Wang, S.J.; Zhang, H.; Dai, X.W.; Chen, Y.Y.; Govers, F.; Huang, L.L.; Kang, Z.S.

    2011-01-01

    Members of the family of 70-kD heat shock proteins (HSP70 s) play various stress-protective roles in plants. In this study, a wheat HSP70 gene was isolated from a suppression subtractive hybridization (SSH) cDNA library of wheat leaves infected by Puccinia striiformis f. sp. tritici. The gene, that

  13. Geysers from the Tiger Stripes of Enceladus

    Science.gov (United States)

    Kohler, Susanna

    2015-10-01

    Enceladus, the sixth-largest moon of Saturn, is a cold, icy world but its also remarkably active. Recent studies have charted over a hundred geysers venting gas and dust into space from Enceladus south polar region. New research addresses the question of how the moons extreme surface terrain influences the locations and behavior of these geysers.Active PlumesEnceladus orbiting within Saturns E ring. Enceladus plumes probably created this ring. [NASA/JPL/Space Science Institute]A decade ago, scientists discovered that Enceladus south polar region is home to a prominent set of four fractures known as the tiger stripes. This region was found to contain roughly 100 geyser jets, which form plumes of gas and dust venting into space at a combined rate of ~200 kilograms per second! These plumes are probably the source of the material in Saturns E ring, in which Enceladus orbits.Recently, Carolyn Porco (UC Berkeley and CICLOPS Space Science Institute) led a study that analyzed 6.5 years of Cassini data, surveying the locations and orientations of 101 geysers. The outcome was peculiar: the geysers are distributed along the tiger stripes, but their directions are not all pointing vertically from the surface (see the video below!).Now, Paul Helfenstein (Cornell University) has teamed up with Porco to examine whether the surface terrain surrounding the geysers affects where the jets erupt, what direction they point, and even when theyre active.Surface InfluenceHelfenstein and Porco demonstrate that the locations and behavior of the geysers are very likely influenced by Enceladus surface features in this region. In particular, they find:The spacing of the geyser jets on Enceladus is not random.The jets are roughly uniformly distributed along the three most active tiger stripes, spaced about 5 kilometers apart. This fixed spacing might be due to shear fractures produced by fault motion along the tiger stripes cutting across the stripes at regular intervals and providing

  14. Transformation of Chlorinated Hydrocarbons on Synthetic Green Rusts

    Science.gov (United States)

    Green rusts (GRs) are layered double hydroxides that contain both ferrous and ferric ions in their structure. GRs can potentially serve as a chemical reductant for degradation of chlorinated hydrocarbons. GRs are found in zerovalent iron based permeable reactive barriers and in c...

  15. Reductive and sorptive properties of sulfate green rust (GRSO4)

    DEFF Research Database (Denmark)

    Nedel, Sorin

    The Fe(II), Fe(III) hydroxide containing sulfate in its structure, called sulfate green rust (GRSO4), can effectively reduce and convert contaminants to less mobile and less toxic forms. However, the ability of GRSO4 to remove positively charged species from solution, via sorption, is very limited...

  16. Stripe Ansatzs from Exactly Solved Models

    OpenAIRE

    2001-01-01

    Using the Boltzmann weights of classical Statistical Mechanics vertex models we define a new class of Tensor Product Ansatzs for 2D quantum lattice systems, characterized by a strong anisotropy, which gives rise to stripe like structures. In the case of the six vertex model we compute exactly, in the thermodynamic limit, the norm of the ansatz and other observables. Employing this ansatz we study the phase diagram of a Hamiltonian given by the sum of XXZ Hamiltonians along the legs coupled by...

  17. Characterization and selection of location for resistance to sugarcane brown rust disease under cuban conditions

    Directory of Open Access Journals (Sweden)

    Joaquín Montalván Delgado

    2016-01-01

    Full Text Available The sugarcane brown rust disease is caused by fungus Puccinia melanocephala Sydow & P. Sydow and it is one of the more importance diseases. The environment where the sugarcane is cultivated is constituted by numerous factors and its combination contributes to the formation of different development and production conditions, what influences in the varietal disease resistance. With the objective of to characterize and to define the resistance tests location to the brown rust disease were carried out experiments in 6 location of the country. Eleven varieties and six patterns were studied. The climatic variables were analyzed during the period in each location and they were carried out evaluations in different ages of the plant and number of the leaves. The quantity of pustules, long of the most frequent pustules, size of the biggest pustules and area per - centage occupied by pustules were evaluated. The data were analyzed statistically. Differential behavior of the locations and the importance of the relative humidity and the temperatures in the manifestation of the disease symptoms were proven. All the locations were important although similarity exists between Matanzas and Villa Clara and between Camagüey and Holguín. Mayabeque and Santiago de Cuba didn’t present similarity with any other one. These 6 locations can be used for the resistance tests and to define the progenitors’ Santiago de Cuba, Holguín, Villa Clara and Mayabeque

  18. 3D Measurement Technology by Structured Light Using Stripe-Edge-Based Gray Code

    Science.gov (United States)

    Wu, H. B.; Chen, Y.; Wu, M. Y.; Guan, C. R.; Yu, X. Y.

    2006-10-01

    The key problem of 3D vision measurement using triangle method based on structured light is to acquiring projecting angle of projecting light accurately. In order to acquire projecting angle thereby determine the corresponding relationship between sampling point and image point, method for encoding and decoding structured light based on stripe edge of Gray code is presented. The method encoded with Gray code stripe and decoded with stripe edge acquired by sub-pixel technology instead of pixel centre, so latter one-bit decoding error was removed. Accuracy of image sampling point location and correspondence between image sampling point and object sampling point achieved sub-pixel degree. In addition, measurement error caused by dividing projecting angle irregularly by even-width encoding stripe was analysed and corrected. Encoding and decoding principle and decoding equations were described. Finally, 3dsmax and Matlab software were used to simulate measurement system and reconstruct measured surface. Indicated by experimental results, measurement error is about 0.05%.

  19. Effects of different heat treatments on lipid quality of striped catfish (Pangasius hypophthalmus

    Directory of Open Access Journals (Sweden)

    Zdzisław Domiszewski

    2011-09-01

    Full Text Available   Background. As a result of consumer acceptance and low price production, sales of striped catfish fillets continue to grow. Striped catfish fillets, due to their white meat and lack of fish scent, can be an alternative to fish such as cod or hake. The paper analysed the influence of four different kinds of heat treatment: boiling with and without the addition of salt, frying, microwave cooking, microwave cooking without water on the composition of fatty acids and the lipid oxidation and hydrolysis level of striped catfish fillets. Material and methods. Assays were performed on striped catfish fillets (Pangasius hypophthalmus, Sauvage 1878, which were bought from local supermarket. Fillets one year before expiration date were assayed. Quality of fish lipids was determined by an analysis of the following factors: peroxide value (PV, anisidine value (AsV, TOTOX value, conjugated dienes (CD, acid value (AV, along with an analysis of the composition of fatty acid (FA via gas chromatography. Results. It was shown that conventional cooking and microwave cooking of striped catfish fillets results in an approximately 10% change in the amount of PUFA, including EPA and DHA, whereas the percentages of SFA and MUFA remain unchanged. The amount of the sum of EPA and DHA in 100 g of raw fillet was 16.5 mg, whereas after conventional cooking, microwave cooking and frying the sum of EPA and DHA was respectively: 12, 22 and 23 mg. It was observed that conventional cooking causes an average 10% loss of fat, a change not observed in case of microwave cooking. In spite of a substantial influence of heat treatment on the amount of both primary and secondary oxidation products, striped catfish lipids maintained good quality after the treatment – PV of every sample was below 3 meq O2/kg lipids, and AsV below 1.5. The addition of salt during boiling caused a 16-fold increase in the amount of peroxides and a fourfold increase in the amount of secondary oxidation

  20. Charge stripes in cuprate superconductors: The middle way

    OpenAIRE

    Tranquada, J. M.

    2005-01-01

    Charge and spin stripe order is a type of electronic crystal observed in certain layered cuprates associated with high-temperature superconductivity. Quantum-disordered stripes could be relevant for understanding the superconductivity. Here I discuss recent experimental characterizations of the stripe-ordered state in La(1.875)Ba(0.125)CuO(4), and compare them with properties of superconducting compositions.

  1. Charge stripes in cuprate superconductors: The middle way

    Science.gov (United States)

    Tranquada, J. M.

    2005-12-01

    Charge and spin stripe order is a type of electronic crystal observed in certain layered cuprates associated with high-temperature superconductivity. Quantum-disordered stripes could be relevant for understanding the superconductivity. Here I discuss recent experimental characterizations of the stripe-ordered state in La{1.875}Ba{0.125}CuO4, and compare them with properties of superconducting compositions.

  2. Insights into Tan Spot and Stem Rust Resistance and Susceptibility by Studying the Pre-Green Revolution Global Collection of Wheat

    Science.gov (United States)

    Abdullah, Sidrat; Sehgal, Sunish Kumar; Jin, Yue; Turnipseed, Brent; Ali, Shaukat

    2017-01-01

    Tan spot (TS), caused by the fungus Pyrenophora tritici-repentis (Died) Drechs, is an important foliar disease of wheat and has become a threat to world wheat production since the 1970s. In this study a globally diverse pre-1940s collection of 247 wheat genotypes was evaluated against Ptr ToxA, P. tritici-repentis race 1, and stem rust to determine if; (i) acquisition of Ptr ToxA by the P. tritici-repentis from Stagonospora nodorum led to increased pathogen virulence or (ii) incorporation of TS susceptibility during development stem rust resistant cultivars led to an increase in TS epidemics globally. Most genotypes were susceptible to stem rust; however, a range of reactions to TS and Ptr ToxA were observed. Four combinations of disease-toxin reactions were observed among the genotypes; TS susceptible-Ptr ToxA sensitive, TS susceptible-Ptr ToxA insensitive, TS resistant-Ptr ToxA insensitive, and TS resistant-Ptr ToxA toxin sensitive. A weak correlation (r = 0.14 for bread wheat and −0.082 for durum) was observed between stem rust susceptibility and TS resistance. Even though there were no reported epidemics in the pre-1940s, TS sensitive genotypes were widely grown in that period, suggesting that Ptr ToxA may not be an important factor responsible for enhanced prevalence of TS.

  3. 金属防锈剂的防锈性能及试验验证%Anti-Rust Properties and Test Validation of Metal Anti-Rust Agents

    Institute of Scientific and Technical Information of China (English)

    侯万果; 王子君; 田前进

    2014-01-01

    The effects of types of anti-rust agents,surfactants,water quality and pH on anti-rust properties of metal anti-rust agents are discussed through analyzing anti-rust mechanism for metal anti-rust agents,and the test verifi-cation is conducted.The results show that in a certain range,the anti-rust properties of metal anti-rust agents with the same or similar molecular structure are improved with the growth of carbon chain.When the molecular structure contains a hydrophobic hydrocarbon group of appropriate length,the anti -rust properties are improved with the in-crease of polar group.The certain surfactants will reduce the anti-rust properties of anti-rust agents.With respect to the distilled water,the tap water reduces the anti-rust properties of metal anti-rust agents.The metal anti-rust a-gents have good anti-rust effect on the 10#steel,brass and aluminum LY12 as pH is 8~8.5.%通过分析金属防锈剂的防锈机理,探讨了防锈剂种类、表面活性剂、水质和 pH值对金属防锈剂防锈性能的影响,并进行了试验验证。结果表明,在一定范围内相同或相似分子结构金属防锈剂的防锈性能随碳链的增长而不断提高;当分子结构中含有适当长度疏水性烃基时,其防锈性能随极性基团的增加而有所提高;某些表面活性剂会降低防锈剂的防锈性能;相对于蒸馏水,自来水则会削弱金属防锈剂的防锈性能;pH值为8~8.5时金属防锈剂对10#钢、黄铜和LY12铝均有较好的防锈效果。

  4. Measurement error affects risk estimates for recruitment to the Hudson River stock of striped bass.

    Science.gov (United States)

    Dunning, Dennis J; Ross, Quentin E; Munch, Stephan B; Ginzburg, Lev R

    2002-06-07

    We examined the consequences of ignoring the distinction between measurement error and natural variability in an assessment of risk to the Hudson River stock of striped bass posed by entrainment at the Bowline Point, Indian Point, and Roseton power plants. Risk was defined as the probability that recruitment of age-1+ striped bass would decline by 80% or more, relative to the equilibrium value, at least once during the time periods examined (1, 5, 10, and 15 years). Measurement error, estimated using two abundance indices from independent beach seine surveys conducted on the Hudson River, accounted for 50% of the variability in one index and 56% of the variability in the other. If a measurement error of 50% was ignored and all of the variability in abundance was attributed to natural causes, the risk that recruitment of age-1+ striped bass would decline by 80% or more after 15 years was 0.308 at the current level of entrainment mortality (11%). However, the risk decreased almost tenfold (0.032) if a measurement error of 50% was considered. The change in risk attributable to decreasing the entrainment mortality rate from 11 to 0% was very small (0.009) and similar in magnitude to the change in risk associated with an action proposed in Amendment #5 to the Interstate Fishery Management Plan for Atlantic striped bass (0.006)--an increase in the instantaneous fishing mortality rate from 0.33 to 0.4. The proposed increase in fishing mortality was not considered an adverse environmental impact, which suggests that potentially costly efforts to reduce entrainment mortality on the Hudson River stock of striped bass are not warranted.

  5. Measurement Error Affects Risk Estimates for Recruitment to the Hudson River Stock of Striped Bass

    Directory of Open Access Journals (Sweden)

    Dennis J. Dunning

    2002-01-01

    Full Text Available We examined the consequences of ignoring the distinction between measurement error and natural variability in an assessment of risk to the Hudson River stock of striped bass posed by entrainment at the Bowline Point, Indian Point, and Roseton power plants. Risk was defined as the probability that recruitment of age-1+ striped bass would decline by 80% or more, relative to the equilibrium value, at least once during the time periods examined (1, 5, 10, and 15 years. Measurement error, estimated using two abundance indices from independent beach seine surveys conducted on the Hudson River, accounted for 50% of the variability in one index and 56% of the variability in the other. If a measurement error of 50% was ignored and all of the variability in abundance was attributed to natural causes, the risk that recruitment of age-1+ striped bass would decline by 80% or more after 15 years was 0.308 at the current level of entrainment mortality (11%. However, the risk decreased almost tenfold (0.032 if a measurement error of 50% was considered. The change in risk attributable to decreasing the entrainment mortality rate from 11 to 0% was very small (0.009 and similar in magnitude to the change in risk associated with an action proposed in Amendment #5 to the Interstate Fishery Management Plan for Atlantic striped bass (0.006— an increase in the instantaneous fishing mortality rate from 0.33 to 0.4. The proposed increase in fishing mortality was not considered an adverse environmental impact, which suggests that potentially costly efforts to reduce entrainment mortality on the Hudson River stock of striped bass are not warranted.

  6. Changing the game: using integrative genomics to probe virulence mechanisms of the stem rust pathogen Puccinia graminis f. sp. tritici

    Directory of Open Access Journals (Sweden)

    Melania eFigueroa

    2016-02-01

    Full Text Available The recent resurgence of wheat stem rust caused by new virulent races of Puccinia graminis f. sp. tritici (Pgt poses a threat to food security. These concerns have catalyzed an extensive global effort towards controlling this disease. Substantial research and breeding programs target the identification and introduction of new stem rust resistance (Sr genes in cultivars for genetic protection against the disease. Such resistance genes typically encode immune receptor proteins that recognize specific components of the pathogen, known as avirulence (Avr proteins. A significant drawback to deploying cultivars with single Sr genes is that they are often overcome by evolution of the pathogen to escape recognition through alterations in Avr genes. Thus, a key element in achieving durable rust control is the deployment of multiple effective Sr genes in combination, either through conventional breeding or transgenic approaches, to minimize the risk of resistance breakdown. In this situation, evolution of pathogen virulence would require simultaneous changes in multiple Avr genes in order to bypass recognition. However, choosing the optimal Sr gene combinations to deploy is a challenge that requires detailed knowledge of the pathogen Avr genes with which they interact and the virulence phenotypes of Pgt existing in nature. Identifying specific Avr genes from Pgt will provide screening tools to enhance pathogen virulence monitoring, assess heterozygosity and propensity for mutation in pathogen populations, and confirm individual Sr gene functions in crop varieties carrying multiple effective resistance genes. Towards this goal, much progress has been made in assembling a high quality reference genome sequence for Pgt, as well as a Pan-genome encompassing variation between multiple field isolates with diverse virulence spectra. In turn this has allowed prediction of Pgt effector gene candidates based on known features of Avr genes in other plant pathogens

  7. WRR4, a broad-spectrum TIR-NB-LRR gene from Arabidopsis thaliana that confers white rust resistance in transgenic oilseed Brassica crops.

    Science.gov (United States)

    Borhan, Mohammad Hossein; Holub, Eric B; Kindrachuk, Colin; Omidi, Mansour; Bozorgmanesh-Frad, Ghazaleh; Rimmer, S Roger

    2010-03-01

    White blister rust caused by Albugo candida (Pers.) Kuntze is a common and often devastating disease of oilseed and vegetable brassica crops worldwide. Physiological races of the parasite have been described, including races 2, 7 and 9 from Brassica juncea, B. rapa and B. oleracea, respectively, and race 4 from Capsella bursa-pastoris (the type host). A gene named WRR4 has been characterized recently from polygenic resistance in the wild brassica relative Arabidopsis thaliana (accession Columbia) that confers broad-spectrum white rust resistance (WRR) to all four of the above Al. candida races. This gene encodes a TIR-NB-LRR (Toll-like/interleukin-1 receptor-nucleotide binding-leucine-rich repeat) protein which, as with other known functional members in this subclass of intracellular receptor-like proteins, requires the expression of the lipase-like defence regulator, enhanced disease susceptibility 1 (EDS1). Thus, we used RNA interference-mediated suppression of EDS1 in a white rust-resistant breeding line of B. napus (transformed with a construct designed from the A. thaliana EDS1 gene) to determine whether defence signalling via EDS1 is functionally intact in this oilseed brassica. The eds1-suppressed lines were fully susceptible following inoculation with either race 2 or 7 isolates of Al. candida. We then transformed white rust-susceptible cultivars of B. juncea (susceptible to race 2) and B. napus (susceptible to race 7) with the WRR4 gene from A. thaliana. The WRR4-transformed lines were resistant to the corresponding Al. candida race for each host species. The combined data indicate that WRR4 could potentially provide a novel source of white rust resistance in oilseed and vegetable brassica crops.

  8. Simulating anisotropic droplet shapes on chemically striped patterned surfaces

    NARCIS (Netherlands)

    Jansen, H.P.; Bliznyuk, O.; Kooij, E.S.; Poelsema, B.; Zandvliet, H.J.W.

    2012-01-01

    The equilibrium shape of droplets on surfaces, functionalized with stripes of alternating wettability, have been investigated using simulations employing a finite element method. Experiments show that a droplet deposited on a surface with relatively narrow hydrophobic stripes compared to the hydroph

  9. Effect of solar radiation on severity of soybean rust.

    Science.gov (United States)

    Young, Heather M; George, Sheeja; Narváez, Dario F; Srivastava, Pratibha; Schuerger, Andrew C; Wright, David L; Marois, James J

    2012-08-01

    Soybean rust (SBR), caused by Phakopsora pachyrhizi, is a damaging fungal disease of soybean (Glycine max). Although solar radiation can reduce SBR urediniospore survival, limited information is available on how solar radiation affects SBR progress within soybean canopies. Such information can aid in developing accurate SBR prediction models. To manipulate light penetration into soybean canopies, structures of shade cloth attenuating 30, 40, and 60% sunlight were constructed over soybean plots. In each plot, weekly evaluations of severity in lower, middle, and upper canopies, and daily temperature and relative humidity were recorded. Final plant height and leaf area index were also recorded for each plot. The correlation between amount of epicuticular wax and susceptibility of leaves in the lower, middle, and upper canopies was assessed with a detached leaf assay. Final disease severity was 46 to 150% greater in the lower canopy of all plots and in the middle canopy of 40 and 60% shaded plots. While daytime temperature within the canopy of nonshaded soybean was greater than shaded soybean by 2 to 3°C, temperatures recorded throughout typical evenings and mornings of the growing season in all treatments were within the range (10 to 28.5°C) for SBR development as was relative humidity. This indicates temperature and relative humidity were not limiting factors in this experiment. Epicuticular wax and disease severity in detached leaf assays from the upper canopy had significant negative correlation (P = 0.009, R = -0.84) regardless of shade treatment. In laboratory experiments, increasing simulated total solar radiation (UVA, UVB, and PAR) from 0.15 to 11.66 MJ m(-2) increased mortality of urediniospores from 2 to 91%. Variability in disease development across canopy heights in early planted soybean may be attributed to the effects of solar radiation not only on urediniospore viability, but also on plant height, leaf area index, and epicuticular wax, which influence

  10. The past, present and future of breeding rust resistant wheat

    Directory of Open Access Journals (Sweden)

    Jeffrey G Ellis

    2014-11-01

    Full Text Available Two classes of genes are used for breeding rust resistant wheat. The first class, called R (for resistance genes, are pathogen race-specific in their action, effective at all plant growth stages and probably mostly encode immune receptors of the nucleotide binding leucine rich repeat (NB-LRR class. The second class called Adult Plant Resistance genes (APR because resistance is usually functional only in adult plants, and, in contrast to most R genes, the levels of resistance conferred by single APR genes are only partial and allow considerable disease development. Some but not all APR genes provide resistance to all isolates of a rust pathogen species and a subclass of these provides resistance to several fungal pathogen species. Initial indications are that APR genes encode a more heterogeneous range of proteins than R proteins. Two APR genes, Lr34 and Yr36, have been cloned from wheat and their products are an ABC transporter and a protein kinase, respectively. Lr34 and Sr2 have provided long lasting and widely used (durable partial resistance and are mainly used in conjunction with other R and APR genes to obtain adequate rust resistance. We caution that some APR genes indeed include race-specific, weak R genes which may be of the NB-LRR class. A research priority to better inform rust resistance breeding is to characterize further APR genes in wheat and to understand how they function and how they interact when multiple APR and R genes are stacked in a single genotype by conventional and GM breeding. An important message is do not be complacent about the general durability of all APR genes.

  11. Resistance of alloplasmic wheats to brown leaf rust

    Directory of Open Access Journals (Sweden)

    Alexander Lvovivh SECHNYAK

    2010-11-01

    Full Text Available The reaction of alloplasmic and euplasmic lines of wheat on brown leaf rust was studied in the condition of field infectious nursery in 2002, 2004, 2006 and 2007. The influence of cytoplasmic genome on resistance of the investigated lines varied for years and probably was mainly specific to race. However the positive effect of alloplasm from Aegilops squarrosa var. typica on resistance to pathogene was stable and universal.

  12. Seeing Stripes: Competition and Complexity in High-Temperature Superconductors

    Energy Technology Data Exchange (ETDEWEB)

    Tranquada, John [BNL

    2004-12-01

    Superconductivity in layered copper-oxide compounds is remarkable not only because it survives to relatively high temperatures, but especially because it appears when mobile charge carriers are doped into a parent antiferromagnetic insulator. The tendency of the carriers to reduce their kinetic energy by delocalizing competes with the magnetic superexchange between spins on copper ions. One possible consequence of this competition is the segregation of carriers into charge stripes that separate antiferromagnetic domains. An ordered stripe phase has been observed by diffraction experiments in a few special cuprate compounds, and stripe order is found to compete with superconductivity. It has been proposed that quantum-disordered stripes might underlie the superconducting phase. Such a concept clashes with the conventional picture of electronic structure in solids. Some of the challenges of experimentally 'seeing' both static and fluctuating stripes will be discussed.

  13. Critical assessment of the evidence for striped nanoparticles

    CERN Document Server

    Stirling, Julian; Sweetman, Adam; Djuranovic, Predrag; Guo, Quanmin; Granwehr, Josef; Lévy, Raphaël; Moriarty, Philip

    2013-01-01

    There is now a significant body of literature in which it is claimed that stripes form in the ligand shell of suitably functionalised Au nanoparticles. This stripe morphology has been proposed to strongly affect the physicochemical and biochemical properties of the particles. We critique the published evidence for striped nanoparticles in detail, with a particular focus on the interpretation of scanning tunnelling microscopy (STM) data (as this is the only technique which ostensibly provides direct evidence for the presence of stripes). Through a combination of an exhaustive re-analysis of the original data with new experimental measurements of a simple control sample comprising entirely unfunctionalised particles, we conclusively show that all of the STM evidence for striped nanoparticles published to date can instead be explained by a combination of well-known instrumental artefacts, strong observer bias, and/or improper data acquisition/analysis protocols. We also critically re-examine the evidence for the...

  14. A quantitative striping removal algorithm for HY- 1 CCD data

    Institute of Scientific and Technical Information of China (English)

    孙凌; 唐军武; 张杰

    2002-01-01

    -- Striping is a common phenomenon in remote sensing imagery acquired by most spaceborne and airborne multispectral sensors. In contrast to the destriping of the images of optoelectronic mechanical scanners, fewer work has been done for push-broom CCD images. Based on the characteristics of HY-1 push-broom multispectral CCD camera and its prelaunch radiometric calibration results, the striping features are analyzed and a quantitative striping removal algorithm is proposed. The algorithm is to obtain the inter-detector equalization curves to reflect the differences between detectors by statistic analysis of the satellite imagery data set, and image stripes arising from the nonuniformity of the detectors of the CCD array can be removed using the estimated equalization curves. The preliminary results show that this method can effectively remove the stripes and preserve the radiometric accuracy of the raw data at the same time.

  15. Magnetic Excitations from Stripes in Cuprate Superconductors

    Science.gov (United States)

    Tranquada, J. M.; Woo, H.; Perring, T. G.; Goka, H.; Gu, G. D.; Xu, G.; Fujita, M.; Yamada, K.

    2004-03-01

    While it is generally believed that antiferromagnetic spin excitations play a significant role in the pairing mechanism of copper-oxide superconductors [1], the nature of the magnetic excitations themselves remains a matter of controversy. Recent measurements of the dispersion of spin excitations in superconducting YBa_2Cu_3O_6+x (YBCO) have attracted much attention. Here we present the results of comprehensive inelastic neutron scattering measurements of the momentum- and energy-dependent spectra of the magnetic fluctuations in La_0.875Ba_0.125CuO_4, which exhibits inhomogeneous, charge-stripe order. We will also point out universalities and differences in the magnetic excitation spectra compared to related charge-stripe ordered compounds and high-temperature superconductors, including La_2-xSr_xNiO4 and YBCO. JMT, HW, GDG and GX are supported by U.S. Department of Energy contract # DE-AC02-98CH1088 [1] J. Orenstein and A. J. Millis, Science 288, 468 (2000).

  16. Rust in the Apollo 16 rocks. [hydration and oxidation processes in lunar environment

    Science.gov (United States)

    Taylor, L. A.; Mao, H. K.; Bell, P. M.

    1973-01-01

    Apollo 16 samples of all four rock types and from all stations contain evidence for hydration and oxidation - i.e., the presence of hydrated iron oxide, probably goethite. Rock 66095 contains native FeNi grains with a characteristic intergrowth of schreibersite and, to lesser extents, of cohenite. Troilite also contains sphalerite. The goethite contains 1.5-4.6 wt.% chlorine and occurs mainly on the edges of FeNi metal, causing a rust color in the cracks and space around the native metal grains, which also contain abundant chlorine. This observation suggests the presence of lawrencite (FeCl2), a phase that deliquesces and oxidizes very rapidly upon exposure to water or to a moist atmosphere.

  17. 金属零部件防锈包装技术介绍%Metal Parts Rust-proof Packaging Technology Introd-u ction

    Institute of Scientific and Technical Information of China (English)

    张晓刚

    2014-01-01

    This article describes the great loss in equipment manufacturing industry caused by corrosion and elaborates three rust-proof technologies .%本文介绍了因锈蚀问题给装备制造各行业带来了巨大的损失,了解防锈技术就变得重要起来,针对三种防锈技术进行了阐述。

  18. A new source of resistance against coffee leaf rust from New-Caledonian natural interspecific hybrids between Coffea arabica and Coffea canephora

    OpenAIRE

    Mahé, Laetitia; Varzea, V. M. P.; Le Pierrès, Daniel; Combes, Marie-Christine; Lashermes, Philippe

    2007-01-01

    The development of cultivars resistant to coffee leaf rust caused by the fungal pathogen Hemileia vastatrix is a priority in coffee breeding. However, only very few descendants of interspecific hybrids between Coffea arabica and diploid relative species have been used as resistance source. Identification of new sources of resistance appeared therefore particularly worthwhile. Hybrid plants derived from interspecific hybridization between C. arabica and Coffea canephora and found in neo-natura...

  19. Facilitation of Rice Stripe Virus Accumulation in the Insect Vector by Himetobi P Virus VP1

    Directory of Open Access Journals (Sweden)

    Shuo Li

    2015-03-01

    Full Text Available The small brown planthopper (SBPH is the main vector for rice stripe virus (RSV, which causes serious rice stripe disease in East Asia. To characterize the virus-vector interactions, the SBPH cDNA library was screened with RSV ribonucleoprotein (RNP as bait using a GAL4-based yeast two-hybrid system. The interaction between RSV-RNP and the Himetobi P virus (HiPV, an insect picorna-like virus VP1 protein was identified. The relationships between HiPV and RSV in SBPH were further investigated, and the results showed that the titer of RSV was commonly higher in single insect that exhibited more VP1 expression. After the VP1 gene was repressed by RNA silencing, the accumulation of RSV decreased significantly in the insect, whereas the virus acquisition ability of SBPH was unaffected, which suggests that HiPV VP1 potentially facilitates the accumulation of RSV in SBPH.

  20. Systemic herpesvirus and morbillivirus co-infection in a striped dolphin (Stenella coeruleoalba).

    Science.gov (United States)

    Soto, S; González, B; Willoughby, K; Maley, M; Olvera, A; Kennedy, S; Marco, A; Domingo, M

    2012-01-01

    During 2007 a dolphin morbillivirus epizootic affected the western Mediterranean and several striped dolphins (Stenella coeruleoalba) stranded on the Catalonian coasts. One of those animals had severe lymphoid depletion, necrosis and syncytial formation in lymph nodes and spleen, with large basophilic nuclear inclusions compatible with herpesvirus detected by immunohistochemical and ultrastructural examination. Non-suppurative encephalitis with associated morbillivirus antigen and morbillivirus antigen within alveolar macrophages were also observed. A pan-herpesvirus nested polymerase chain reaction amplified a sequence virtually identical to two cetacean herpesvirus sequences previously identified in systemic infections in an Atlantic Cuvier's beaked whale (Ziphius cavirostris) and in a Mediterranean striped dolphin. The herpesviral infection was probably secondary to the immunosuppression caused by the morbillivirus. To our knowledge, this is the first report of a cetacean co-infected by dolphin morbillivirus and herpesvirus with evidence of lesions attributable to both viruses.

  1. Postulation of seedling leaf rust resistance genes in 84 Chinese winter wheat cultivars

    Institute of Scientific and Technical Information of China (English)

    REN Xiao-li; LIU Tai-guo; LIU Bo; GAO Li; CHEN Wan-quan

    2015-01-01

    Wheat leaf rust (caused byPuccinia triticina) is one of the most important fungal diseases in China. There are tens of winter wheat cultivars which are approved to be released by the government at a national level and more than 100 wheat cultivars at the provincial level. But there is no information about leaf rust (Lr) genes in these cultivars, which makes it dififcult for farmers and breeders to select which cultivars they should plant in their ifelds and use in their breeding programs. The objec-tive of this paper was to identify the leaf rust resistant genes at seedling stage present in the 84 commercial wheat cultivars from China that have been released in the past few years. A set of 20 near isogenic lines with Thatcher background and 6 lines with knownLr genes were used to test the virulence of 12 races ofP. triticina (Pt). By comparing the infection types (ITs) produced on the 84 cultivars by the 12Pt races with the ITs on the differential sets, theLrgenes were postulated. In addition, 8 molecular markers ofLr genes such asLr9,Lr10,Lr19,Lr20,Lr21,Lr24,Lr26 andLr29, which are closely linked to or co-segregated with theLr gene, were used for further validation of the genes in the 84 Chinese winter wheat cultivars. TwelveLr genes, includingLr1, Lr3,(Lr3bg), (Lr3ka), Lr11, Lr13, Lr14a, Lr16, Lr26, Lr27, Lr30 andLr31 were postulated to be present either singly or in combinations in these Chinese wheat cultivars.Lr3 andLr26 were detected most often in the tested cultivars, with frequencies of 51.2 and 38.1%, respectively. No wheatLr genes were detected in 16 cultivars, and 4 cultivars may carry unknownLr genes other than those used in this study.Lr9,Lr20,Lr21,Lr24,Lr25andLr29 were not present in any of the 84 tested accessions.

  2. Differential response by Melaleuca quinquenervia trees to attack by the rust fungus Puccinia psidii in Florida

    Science.gov (United States)

    Melaleuca quinquenervia (melaleuca, paperbark tree) is an exotic invasive tree in Florida, Hawaii, and some Caribbean islands. Puccinia psidii (guava rust-fungus) is a Neotropical rust fungus, reported to attack many species in the Myrtaceae and one genus in the Heteropyxidaceae, both members of the...

  3. Epistatic adult plant resistance in wheat to stem rust cosegregates with Sr12 seedling resistance

    Science.gov (United States)

    Wheat adult plant resistance (APR) to stem rust is desirable. Researchers have characterized the inheritance of APR in cultivar Thatcher as complex. In order to identify the loci providing APR in Thatcher, we evaluated 160 RILs derived from Thatcher/McNeal for stem rust reaction in the field in Keny...

  4. Morphology and AFLP markers suggest three Hordeum chilense ecotypes that differ in avoidance to rust fungi

    NARCIS (Netherlands)

    Vaz Patto, M.C.; Aardse, A.; Buntjer, J.; Rubiales, D.; Martin, A.; Niks, R.E.

    2001-01-01

    In Hordeum chilense Roem. & Schult., a high variation in the level of avoidance to infection of barley leaf rust (Puccinia hordei Otth) occurs. Probably resulting from the properties of the stomata, the rust germ tube overgrows stomata, and the infection process fails in an early stage. In the prese

  5. Composition and structure of an iron-bearing, layered double hydroxide (LDH) - Green rust sodium sulphate

    DEFF Research Database (Denmark)

    Christiansen, B. C.; Balic-Zunic, T.; Petit, P. O.;

    2009-01-01

    was characterised using Mossbauer spectroscopy, X-ray diffraction, scanning electron microscopy and atomic force microscopy. The composition of the solution from which the green rust precipitated was established by mass and absorption spectroscopy. The sulphate form of green rust is composed of brucite-like layers...

  6. Identification of Putative Coffee Rust Mycoparasites via Single-Molecule DNA Sequencing of Infected Pustules.

    Science.gov (United States)

    James, Timothy Y; Marino, John A; Perfecto, Ivette; Vandermeer, John

    2015-11-13

    The interaction of crop pests with their natural enemies is a fundament to their control. Natural enemies of fungal pathogens of crops are poorly known relative to those of insect pests, despite the diversity of fungal pathogens and their economic importance. Currently, many regions across Latin America are experiencing unprecedented epidemics of coffee rust (Hemileia vastatrix). Identification of natural enemies of coffee rust could aid in developing management strategies or in pinpointing species that could be used for biocontrol. In the present study, we characterized fungal communities associated with coffee rust lesions by single-molecule DNA sequencing of fungal rRNA gene bar codes from leaf discs (≈28 mm(2)) containing rust lesions and control discs with no rust lesions. The leaf disc communities were hyperdiverse in terms of fungi, with up to 69 operational taxonomic units (putative species) per control disc, and the diversity was only slightly reduced in rust-infected discs, with up to 63 putative species. However, geography had a greater influence on the fungal community than whether the disc was infected by coffee rust. Through comparisons between control and rust-infected leaf discs, as well as taxonomic criteria, we identified 15 putative mycoparasitic fungi. These fungi are concentrated in the fungal family Cordycipitaceae and the order Tremellales. These data emphasize the complexity of diverse fungi of unknown ecological function within a leaf that might influence plant disease epidemics or lead to the development of species for biocontrol of fungal disease.

  7. Molecular tagging of a novel rust resistance gene R12 in sunflower (Helianthus annuus L.)

    Science.gov (United States)

    Sunflower production in North America has recently suffered economic losses in yield and seed quality from sunflower rust (Puccinia helianthi Schwein.) because of the increasing incidence and lack of resistance to new rust races. RHA 464, a newly released sunflower male fertility restorer line, is r...

  8. Critical assessment of the evidence for striped nanoparticles.

    Directory of Open Access Journals (Sweden)

    Julian Stirling

    Full Text Available There is now a significant body of literature which reports that stripes form in the ligand shell of suitably functionalised Au nanoparticles. This stripe morphology has been proposed to strongly affect the physicochemical and biochemical properties of the particles. We critique the published evidence for striped nanoparticles in detail, with a particular focus on the interpretation of scanning tunnelling microscopy (STM data (as this is the only technique which ostensibly provides direct evidence for the presence of stripes. Through a combination of an exhaustive re-analysis of the original data, in addition to new experimental measurements of a simple control sample comprising entirely unfunctionalised particles, we show that all of the STM evidence for striped nanoparticles published to date can instead be explained by a combination of well-known instrumental artefacts, or by issues with data acquisition/analysis protocols. We also critically re-examine the evidence for the presence of ligand stripes which has been claimed to have been found from transmission electron microscopy, nuclear magnetic resonance spectroscopy, small angle neutron scattering experiments, and computer simulations. Although these data can indeed be interpreted in terms of stripe formation, we show that the reported results can alternatively be explained as arising from a combination of instrumental artefacts and inadequate data analysis techniques.

  9. QTL analysis of crown rust resistance in perennial ryegrass under conditions of natural and artificial infection

    DEFF Research Database (Denmark)

    Schejbel, Britt; Jensen, Louise Friis Bach; Xing, Yongzhong;

    2007-01-01

    as well as by artificial pathogen inoculations using a detached leaf assessment. The broad sense heritability values for the field, detached leaf and combined assays were 0.42, 0.56, and 0.64, respectively, indicating a good potential for selection for crown rust resistance. A total of six QTLs were......Crown rust is an economically devastating disease of perennial ryegrass. Both artificial crown rust inoculations, with the possibility of several selection cycles in one year, as well as marker-assisted selection can be used for more efficient breeding of new resistant cultivars. The objective...... of this study was to map quantitative trait loci (QTL) for response to crown rust infection in perennial ryegrass. In order to identify relevant markers for response to crown rust infection, QTL mapping was performed on a ryegrass mapping population which was evaluated for resistance in the field for two years...

  10. Thermal striping in triple jet flow

    Energy Technology Data Exchange (ETDEWEB)

    Durve, A. [Department Of Chemical Engineering, Institute of Chemical Technology, Matunga, Mumbai 400019 (India); Patwardhan, A.W., E-mail: aw.patwardhan@ictmumbai.edu.i [Department Of Chemical Engineering, Institute of Chemical Technology, Matunga, Mumbai 400019 (India); Banarjee, I.; Padmakumar, G.; Vaidyanathan, G. [Experimental Thermal Hydraulics Section, Separation Technology and Hydraulics Division, Fast Reactor Technology Group, Indira Gandhi Centre for Atomic Research, Kalpakkam 603102 (India)

    2010-10-15

    A quantitative analysis of temperature fluctuations is necessary for understanding the implications of thermal striping phenomenon occurring in the core outlet region of the fast breeder reactor (FBR). In the present study, the applicability of the temperature variance model and associated modeling for the triple jet flow has been evaluated. A system of three non-isothermal parallel jets, experimented by and has been used to simulate the flow occurring at the core outlet region of the FBR. The velocity fields of the flow have been predicted using the Reynolds stress model. The performance of the temperature variance model was tested using different turbulent Prandtl numbers and different algebraic models for scalar dissipation rate. The predictions were validated with the experimental results of the respective authors. The predicted values of mean temperature were found to be sensitive to turbulent Prandtl number. In this study turbulent Prandtl number was found to vary along the flow field as a function of turbulent Reynolds number.

  11. Assessing Wheat Yellow Rust Disease through Hyperspectral Remote Sensing

    Science.gov (United States)

    Krishna, G.; Sahoo, R. N.; Pargal, S.; Gupta, V. K.; Sinha, P.; Bhagat, S.; Saharan, M. S.; Singh, R.; Chattopadhyay, C.

    2014-12-01

    The potential of hyperspectral reflectance data was explored to assess severity of yellow rust disease (Biotroph Pucciniastriiformis) of winter wheat in the present study. The hyperspectral remote sensing data was collected for winter wheat (Triticum aestivum L.) cropat different levels of disease infestation using field spectroradiometer over the spectral range of 350 to 2500 nm. The partial least squares (PLS) and multiple linear (MLR) regression techniques were used to identify suitable bands and develop spectral models for assessing severity of yellow rust disease in winter wheat crop. The PLS model based on the full spectral range and n = 36, yielded a coefficient of determination (R2) of 0.96, a standard error of cross validation (SECV) of 12.74 and a root mean square error of cross validation (RMSECV) of 12.41. The validation analysis of this PLS model yielded r2 as 0.93 with a SEP (Standard Error of Prediction) of 7.80 and a RMSEP (Root Mean Square Error of prediction) of 7.46. The loading weights of latent variables from PLS model were used to identify sensitive wavelengths. To assess their suitability multiple linear regression (MLR) model was applied on these wavelengths which resulted in a MLR model with three identified wavelength bands (428 nm, 672 nm and 1399 nm). MLR model yielded acceptable results in the form of r2 as 0.89 for calibration and 0.90 for validation with SEP of 3.90 and RMSEP of 3.70. The result showed that the developed model had a great potential for precise delineation and detection of yellow rust disease in winter wheat crop.

  12. Identification and validation of single nucleotide polymorphic markers linked to Ug99 stem rust resistance in spring wheat

    Science.gov (United States)

    Chao, Shiaoman; Singh, Ravi P.; Sorrells, Mark E.

    2017-01-01

    Wheat stem rust (Puccinia graminis f. sp. tritici Eriks. and E. Henn.) is one of the most destructive diseases world-wide. Races belonging to Ug99 (or TTKSK) continue to cause crop losses in East Africa and threaten global wheat production. Developing and deploying wheat varieties with multiple race-specific genes or complex adult plant resistance is necessary to achieve durability. In the present study, we applied genome-wide association studies (GWAS) for identifying loci associated with the Ug99 stem rust resistance (SR) in a panel of wheat lines developed at the International Maize and Wheat Improvement Center (CIMMYT). Genotyping was carried out using the wheat 9K iSelect single nucleotide polymorphism (SNP) chip. Phenotyping was done in the field in Kenya by infection of Puccinia graminis f. sp. tritici race TTKST, the Sr24-virulent variant of Ug99. Marker-trait association identified 12 SNP markers significantly associated with resistance. Among them, 7 were mapped on five chromosomes. Markers located on chromosomes 4A and 4B overlapped with the location of the Ug99 resistance genes SrND643 and Sr37, respectively. Markers identified on 7DL were collocated with Sr25. Additional significant markers were located in the regions where no Sr gene has been reported. The chromosome location for five of the SNP markers was unknown. A BLASTN search of the NCBI database using the flanking sequences of the SNPs associated with Ug99 resistance revealed that several markers were linked to plant disease resistance analogues, while others were linked to regulatory factors or metabolic enzymes. A KASP (Kompetitive Allele Specific PCR) assay was used for validating six marker loci linked to genes with resistance to Ug99. Of those, four co-segregated with the Sr25-pathotypes while the rest identified unknown resistance genes. With further investigation, these markers can be used for marker-assisted selection in breeding for Ug99 stem rust resistance in wheat. PMID:28241006

  13. Thermal striping in nuclear reactors: POD analysis of LES simulations and experiment

    Science.gov (United States)

    Merzari, Elia; Alvarez, Andres; Marin, Oana; Obabko, Aleksandr; Lomperski, Steve; Aithal, Shashi

    2015-11-01

    Thermal fatigue caused due to thermal striping impacts design and analyses of a wide-range of industrial apparatus. This phenomena is of particular significance in nuclear reactor applications, primarily in sodium cooled fast reactors. In order to conduct systematic analyses of the thermal striping phenomena a simplified experimental set-up was designed and built at Argonne National Laboratory. In this set-up two turbulent jets with a temperature difference of about 20K were mixed in a rectangular tank. The jets entered the tank via 2 hexagonal inlets. Two different inlet geometries were studied, both experimentally and via high-fidelity LES simulations. Proper Orthogonal Decomposition (POD) was performed on the turbulent velocity field in the tank to identify the most dominant energetic modes. The POD analyses of the experimental data in both inlet geometrical configurations were compared with LES simulations. Detailed POD analyses are presented to highlight the impact of geometry on the velocity and thermal fields. These can be correlated with experimental and numerical data to assess the impact of thermal striping on the design of the upper plenum of sodium-cooled nuclear reactors. ALCF.

  14. Reduction of Uncorrelated Striping Noise—Applications for Hyperspectral Pushbroom Acquisitions

    Directory of Open Access Journals (Sweden)

    Christian Rogass

    2014-11-01

    Full Text Available Hyperspectral images are of increasing importance in remote sensing applications. Imaging spectrometers provide semi-continuous spectra that can be used for physics based surface cover material identification and quantification. Preceding radiometric calibrations serve as a basis for the transformation of measured signals into physics based units such as radiance. Pushbroom sensors collect incident radiation by at least one detector array utilizing the photoelectric effect. Temporal variations of the detector characteristics that differ with foregoing radiometric calibration cause visually perceptible along-track stripes in the at-sensor radiance data that aggravate succeeding image-based analyses. Especially, variations of the thermally induced dark current dominate and have to be reduced. In this work, a new approach is presented that efficiently reduces dark current related stripe noise. It integrates an across-effect gradient minimization principle. The performance has been evaluated using artificially degraded whiskbroom (reference and real pushbroom acquisitions from EO-1 Hyperion and AISA DUAL that are significantly covered by stripe noise. A set of quality indicators has been used for the accuracy assessment. They clearly show that the new approach outperforms a limited set of tested state-of-the-art approaches and achieves a very high accuracy related to ground-truth for selected tests. It may substitute recent algorithms in the Reduction of Miscalibration Effects (ROME framework that is broadly used to reduce radiometric miscalibrations of pushbroom data takes.

  15. Characterization of cysteine protease-like genes in the striped rice stem borer, Chilo suppressalis.

    Science.gov (United States)

    Ge, Zhao-Yu; Wan, Pin-Jun; Li, Guo-Qing; Xia, Yong-Gui; Han, Zhao-Jun

    2014-02-01

    The striped rice stem borer, Chilo suppressalis (Walker), is a major pest for rice production in China and the rest of Southeast Asia. Chemical control is the main means to alleviate losses due to this pest, which causes serious environmental pollution. An effective and environmentally friendly approach is needed for the management of the striped rice stem borer. Cysteine proteases in insects could be useful targets for pest management either through engineering plant protease inhibitors, targeting insect digestive cysteine proteases, or through RNA interference-based silencing of cysteine proteases, disrupting developmental regulation of insects. In this study, eight cysteine protease-like genes were identified and partially characterized. The genes CCO2 and CCL4 were exclusively expressed in the larval gut, and their expression was affected by the state of nutrition in the insect. The expression of CCL2, CCL3, and CCO1 was significantly affected by the type of host plant, suggesting a role in host plant - insect interactions. Our initial characterization of the striped rice stem borer cysteine protease-like genes provides a foundation for further research on this important group of genes in this major insect pest of rice.

  16. Sustained eruptions on Enceladus explained by turbulent dissipation in tiger stripes

    Science.gov (United States)

    Kite, Edwin S.; Rubin, Allan M.

    2016-04-01

    Spacecraft observations suggest that the plumes of Saturn’s moon Enceladus draw water from a subsurface ocean, but the sustainability of conduits linking ocean and surface is not understood. Observations show eruptions from “tiger stripe” fissures that are sustained (although tidally modulated) throughout each orbit, and since the 2005 discovery of the plumes. Peak plume flux lags peak tidal extension by ˜1 rad, suggestive of resonance. Here, we show that a model of the tiger stripes as tidally flexed slots that puncture the ice shell can simultaneously explain the persistence of the eruptions through the tidal cycle, the phase lag, and the total power output of the tiger stripe terrain, while suggesting that eruptions are maintained over geological timescales. The delay associated with flushing and refilling of O(1)-m-wide slots with ocean water causes erupted flux to lag tidal forcing and helps to buttress slots against closure, while tidally pumped in-slot flow leads to heating and mechanical disruption that staves off slot freezeout. Much narrower and much wider slots cannot be sustained. In the presence of long-lived slots, the 106-y average power output of the tiger stripes is buffered by a feedback between ice melt-back and subsidence to O(1010) W, which is similar to observed power output, suggesting long-term stability. Turbulent dissipation makes testable predictions for the final flybys of Enceladus by Cassini. Our model shows how open connections to an ocean can be reconciled with, and sustain, long-lived eruptions. Turbulent dissipation in long-lived slots helps maintain the ocean against freezing, maintains access by future Enceladus missions to ocean materials, and is plausibly the major energy source for tiger stripe activity.

  17. Screening and incorporation of rust resistance from Allium cepa into bunching onion (Allium fistulosum) via alien chromosome addition.

    Science.gov (United States)

    Wako, Tadayuki; Yamashita, Ken-ichiro; Tsukazaki, Hikaru; Ohara, Takayoshi; Kojima, Akio; Yaguchi, Shigenori; Shimazaki, Satoshi; Midorikawa, Naoko; Sakai, Takako; Yamauchi, Naoki; Shigyo, Masayoshi

    2015-04-01

    Bunching onion (Allium fistulosum L.; 2n = 16), bulb onion (Allium cepa L. Common onion group), and shallot (Allium cepa L. Aggregatum group) cultivars were inoculated with rust fungus, Puccinia allii, isolated from bunching onion. Bulb onions and shallots are highly resistant to rust, suggesting they would serve as useful resources for breeding rust resistant bunching onions. To identify the A. cepa chromosome(s) related to rust resistance, a complete set of eight A. fistulosum - shallot monosomic alien addition lines (MAALs) were inoculated with P. allii. At the seedling stage, FF+1A showed a high level of resistance in controlled-environment experiments, suggesting that the genes related to rust resistance could be located on shallot chromosome 1A. While MAAL, multi-chromosome addition line, and hypoallotriploid adult plants did not exhibit strong resistance to rust. In contrast to the high resistance of shallot, the addition line FF+1A+5A showed reproducibly high levels of rust resistance.

  18. Minimum mean square error method for stripe nonuniformity correction

    Institute of Scientific and Technical Information of China (English)

    Weixian Qian; Qian Chen; Guohua Gu

    2011-01-01

    @@ Stripe nonuniformity is very typical in line infrared focal plane (IRFPA) and uncooled starring IRFPA.We develop the minimum mean square error (MMSE) method for stripe nonuniformity correction (NUC).The goal of the MMSE method is to determine the optimal NUC parameters for making the corrected image the closest to the ideal image.%Stripe nonuniformity is very typical in line infrared focal plane (IRFPA) and uncooled starring IRFPA.We develop the minimum mean square error (MMSE) method for stripe nonuniformity correction (NUC).The goal of the MMSE method is to determine the optimal NUC parameters for making the corrected image the closest to the ideal image. Moreover, this method can be achieved in one frame, making it more competitive than other scene-based NUC algorithms. We also demonstrate the calibration results of our algorithm using real and virtual infrared image sequences. The experiments verify the positive effect of our algorithm.

  19. From Select Agent to an Established Pathogen: The Response to Phakopsora pachyrhizi (Soybean Rust) in North America.

    Science.gov (United States)

    Kelly, Heather Y; Dufault, Nicholas S; Walker, David R; Isard, Scott A; Schneider, Raymond W; Giesler, Loren J; Wright, David L; Marois, James J; Hartman, Glen L

    2015-07-01

    The pathogen causing soybean rust, Phakopsora pachyrhizi, was first described in Japan in 1902. The disease was important in the Eastern Hemisphere for many decades before the fungus was reported in Hawaii in 1994, which was followed by reports from countries in Africa and South America. In 2004, P. pachyrhizi was confirmed in Louisiana, making it the first report in the continental United States. Based on yield losses from countries in Asia, Africa, and South America, it was clear that this pathogen could have a major economic impact on the yield of 30 million ha of soybean in the United States. The response by agencies within the United States Department of Agriculture, industry, soybean check-off boards, and universities was immediate and complex. The impacts of some of these activities are detailed in this review. The net result has been that the once dreaded disease, which caused substantial losses in other parts of the world, is now better understood and effectively managed in the United States. The disease continues to be monitored yearly for changes in spatial and temporal distribution so that soybean growers can continue to benefit by knowing where soybean rust is occurring during the growing season.

  20. The role of green rust in the environment: a review O papel do green rust no ambiente

    Directory of Open Access Journals (Sweden)

    Lucia H. G. Chaves

    2005-06-01

    Full Text Available Iron(II-iron(III hydroxy-salts known as green rusts (GRs initially were identified and studied as corrosion products of steel and iron. Recently they were discovered as minerals present in hydromorphic soils and sediments. Different studies have suggested that GRs, due to their high reactivity, play an important role in the fate and transport of many contaminants in suboxic soils, sediments and aquifers where microbial reduction rates are limited by low carbon content. Also, GRs have considerable potential for applications such as water-purification processes and gas adsorbents. However, as GRs are only a transient state during the reduction of ferric iron and are converted to more stable forms, it is still necessary to continue studies about their behavior.Hidróxidos de ferro (II-ferro(III conhecidos como "green rust" (GR, inicialmente foram identificados e estudados como sendo os produtos provenientes da corrosão do aço e do ferro. Recentemente esses hidróxidos foram encontrados na forma mineral em solos hidromórficos e em sedimentos. Devido a sua alta reatividade, muitos trabalhos têm mostrado que esses hidróxidos desempenham um importante papel no destino e transporte de muitos contaminantes em solos subóxicos, sedimentos e aqüíferos, onde a taxa de redução microbiana é limitada pelo baixo conteúdo de carbono. Os "green rusts" também podem ser utilizados nos processos de purificação de águas e como adsorventes de gases. Entretanto, como GR são considerados uma fase transitória durante a redução do íon férrico e são, rapidamente, convertidos para formas mais estáveis, é necessário que os estudos sobre seu comportamento continuem.

  1. Thallium-rich rust scales in drinkable water distribution systems: A case study from northern Tuscany, Italy.

    Science.gov (United States)

    Biagioni, Cristian; D'Orazio, Massimo; Lepore, Giovanni O; d'Acapito, Francesco; Vezzoni, Simone

    2017-06-01

    Following the detection of a severe thallium contamination of the drinkable water from the public distribution system of Valdicastello Carducci-Pietrasanta (northern Tuscany, Italy), and the identification of the source of contamination in the Molini di Sant'Anna spring (average Tl content≈15μgL(-1)), the replacement of the contaminated water with a virtually Tl-free one (Tl<0.10μgL(-1)) caused an increase in Tl concentration in the drinkable water. This suggested that the pipeline interior had become a secondary source of Tl contamination, promoting its mineralogical and geochemical study. Rust scales samples taken from several pipeline segments, as well as leaching products obtained from these samples, were investigated through scanning electron microscopy, X-ray fluorescence chemical analyses, inductively coupled plasma - mass spectrometry, X-ray diffraction, and X-ray absorption spectroscopy. Thallium-rich rust scales (up to 5.3wt% Tl) have been found only in pipeline samples taken downstream the water treatment plant, whereas the sample taken upstream contains much less Tl (~90μgg(-1)). The Tl-rich nature of such scales is related to the occurrence of nano- and micro-spherules of Tl2O3 and less abundant nanocrystalline μm-sized encrustations of TlCl. Leaching experiments on Tl-rich rust scales indicate that a fraction of the available Tl is easily dissolved in tap water; X-ray absorption spectroscopy suggests that monovalent thallium occurs in water equilibrated with the rust scales, probably related to the dissolution of TlCl encrustations. Therefore, Tl dissolved as Tl(+) only in the water from the Molini di Sant'Anna spring was partially removed through oxidative precipitation of Tl2O3 and precipitation of TlCl. This highlights the critical role played by the addition of chlorine-based oxidants in water treatment plants that could favour the deposition of Tl-rich coatings within the pipelines, giving rise to unexpected secondary sources of

  2. A reassessment of the risk of rust fungi developing resistance to fungicides.

    Science.gov (United States)

    Oliver, Richard P

    2014-11-01

    Rust fungi are major pathogens of many annual and perennial crops. Crop protection is largely based on genetic and chemical control. Fungicide resistance is a significant issue that has affected many crop pathogens. Some pathogens have rapidly developed resistance and hence are regarded as high-risk species. Rust fungi have been classified as being low risk, in spite of sharing many relevant features with high-risk pathogens. An examination of the evidence suggests that rust fungi may be wrongly classified as low risk. Of the nine classes of fungicide to which resistance has developed, six are inactive against rusts. The three remaining classes are quinone outside inhibitors (QoIs), demethylation inhibitors (DMIs) and succinate dehydrogenase inhibitors (SDHIs). QoIs have been protected by a recently discovered intron that renders resistant mutants unviable. Low levels of resistance have developed to DMIs, but with limited field significance. Older SDHI fungicides were inactive against rusts. Some of the SDHIs introduced since 2003 are active against rusts, so it may be that insufficient time has elapsed for resistance to develop, especially as SDHIs are generally sold in mixtures with other actives. It would therefore seem prudent to increase the level of vigilance for possible cases of resistance to established and new fungicides in rusts.

  3. Introgression of a leaf rust resistance gene from Aegilops caudata to bread wheat

    Indian Academy of Sciences (India)

    Amandeep Kaur Riar; Satinder Kaur; H. S. Dhaliwal; Kuldeep Singh; Parveen Chhuneja

    2012-08-01

    Rusts are the most important biotic constraints limiting wheat productivity worldwide. Deployment of cultivars with broad spectrum rust resistance is the only environmentally viable option to combat these diseases. Identification and introgression of novel sources of resistance is a continuous process to combat the ever evolving pathogens. The germplasm of nonprogenitor Aegilops species with substantial amount of variability has been exploited to a limited extent. In the present investigation introgression, inheritance and molecular mapping of a leaf rust resistance gene of Ae. caudata (CC) acc. pau3556 in cultivated wheat were undertaken. An F2 population derived from the cross of Triticum aestivum cv.WL711 – Ae. caudata introgression line T291-2 with wheat cultivar PBW343 segregated for a single dominant leaf rust resistance gene at the seedling and adult plant stages. Progeny testing in F3 confirmed the introgression of a single gene for leaf rust resistance. Bulked segregant analysis using polymorphic D-genome-specific SSR markers and the cosegregation of the 5DS anchored markers (Xcfd18, Xcfd78, Xfd81 and Xcfd189) with the rust resistance in the F2 population mapped the leaf rust resistance gene (LrAC) on the short arm of wheat chromosome 5D. Genetic complementation and the linked molecular markers revealed that LrAC is a novel homoeoallele of an orthologue Lr57 already introgressed from the 5M chromosome of Ae. geniculata on 5DS of wheat.

  4. US Atlantic coast striped bass: Issues with a recovered population

    Science.gov (United States)

    Hartman, K.J.; Margraf, F.J.

    2003-01-01

    Striped bass, Morone saxatilis (Walbaum), is an anadromous species naturally occurring along the US Atlantic coast, which historically supported valuable commercial and recreational fisheries. In response to a near order-of-magnitude decline in landings, the Atlantic States Marine Fisheries Commission enacted a management plan in 1981 protecting fish until they could spawn at least once. By 1989, recruitment increased in natal rivers and regulations were relaxed, permitting limited fisheries by 1990. By 1995, the stock was declared fully recovered. Since the recovery, concern has increased over the health of the stocks. In the 1990s, fish in poor physical condition with dermal lesions became common in Chesapeake Bay. Pathogens of most concern in cultures from fish include the genus Mycobacterium. Coincident with declines in fish health were changes in diets, declines of preferred prey, and reduced growth and condition. Theories were suggested linking declines in condition to reductions in forage base or pathogens. Diets have changed since the 1950s and while many Chesapeake fish are infected with mycobacteria, it is still not known how or if these factors are linked. The highest priorities for research were considered to be: linking numerous local and regional studies to provide a coast-wide perspective; continuation of investigations linking population health to the prey-base; determination of the cause-effect of mycobacteria infections; and formulation of management options.

  5. Individual-based model of young-of-the-year striped bass population dynamics. II. Factors affecting recruitment in the Potomac River, Maryland

    Energy Technology Data Exchange (ETDEWEB)

    Cowan, J.H. (Univ. of South Alabama, Mobile, AL (United States)); Rose, K.A. (Oak Ridge National Lab., TN (United States)); Rutherford, E.S.; Houde, E.D. (Univ. of Maryland System, Solomons, MD (United States))

    1993-05-01

    An individual-based model of the population dynamics of young-of-the-year striped bass Morone saxatilis in the Potomac River, Maryland, was used to test the hypothesis that historically high recruitment variability can be explained by changes in environmental and biological factors that result in relatively small changes in growth and mortality rates of striped bass larvae. The four factors examined were (1) size distribution of female parents, (2) zooplankton prey density during the development of striped bass larvae, (3) density of completing larval white perch M. americana, and (4) temperature during larval development. Simulation results suggest that variations in female size and in prey for larvae alone could cause 10-fold variability in recruitment. But no single factor alone caused changes in vital rates of age-0 fish that could account for the 145-fold variability in the Potomac River index of juvenile recruitment. However, combined positive or negative effects of two or more factors resulted in more than a 150-fold simulated recruitment variability, suggesting that combinations of factors can account for the high observed annual variability in striped bass recruitment success. Higher cumulative mortality of feeding larvae and younger life stages than of juveniles was common to all simulations. supporting the contention that striped bass year-class strength is determined prior to metamorphosis. 76 refs., 7 figs., 4 tabs.

  6. White pine blister rust resistance in North American, Asian and european species - results from artificial inoculartion trials in Oregon

    Directory of Open Access Journals (Sweden)

    R.A. Sniezko

    2013-12-01

    Full Text Available Dorena Genetic Resource Center (DGRC has used artificial inoculation trials to evaluate progenies of thousands of Pinus monticola and P. lambertiana selections from Oregon and Washington for resistance to white pine blister rust caused by Cronartium ribicola. In addition, early results are now available for P. albicaulis and P. strobiformis. DGRC has also recently evaluated seed orchard progenies of P. strobus, as well as bulked seedlots from P. armandii and P. peuce. The majority of P. monticola, P. lambertiana, P. albicaulis, and P. strobus progenies are very susceptible to blister rust. However, resistance exists in all these species. P. strobiformis showed relatively high levels of resistance for the eight progenies tested. Resistance in P. armandii was mainly reflected in the very low percentage of cankered seedlings; for P. peuce, the high percentage of cankered seedlings alive three years after inoculation was notable. R-genes are present in some of the North American five-needle pine species, but partial resistance traits (e.g. bark reaction will play a major role in breeding activities for P. monticola and P. lambertiana and will likely be the key to developing durable resistance.

  7. White pine blister rust resistance in North American, Asian and European species - results from artificial inoculation trials in Oregon

    Directory of Open Access Journals (Sweden)

    R.A. Sniezko

    2008-09-01

    Full Text Available Dorena Genetic Resource Center (DGRC has used artificial inoculationtrials to evaluate progenies of thousands of Pinus monticola and P. lambertiana selections from Oregon and Washington for resistance to white pine blister rust caused by Cronartium ribicola. In addition, early results are now available for P.albicaulis and P. strobiformis. DGRC has also recently evaluated seed orchard progenies of P.strobus, as well as bulked seedlots from P. armandii and P. peuce.The majority of P. monticola, P. lambertiana, P. albicaulis, and P. strobus progenies are very susceptible to blister rust. However, resistance exists in all these species. P.strobiformis showed relatively high levels of resistance for the eight progenies tested.Resistance in P. armandii was mainly reflected in the very low percentage of cankered seedlings; for P. peuce, the high percentage of cankered seedlings alive three years after inoculation was notable. R-genes are present in some of the North American five-needle pine species, but partial resistance traits (e.g. bark reactionwill play a major role in breeding activities for P. monticola and P. lambertiana and will likely be the key to developing durable resistance.

  8. Polyphenoloxidase activity in coffee leaves and its role in resistance against the coffee leaf miner and coffee leaf rust.

    Science.gov (United States)

    Melo, Geraldo Aclécio; Shimizu, Milton Massao; Mazzafera, Paulo

    2006-02-01

    In plants, PPO has been related to defense mechanism against pathogens and insects and this role was investigated in coffee trees regarding resistance against a leaf miner and coffee leaf rust disease. PPO activity was evaluated in different genotypes and in relation to methyl-jasmonate (Meja) treatment and mechanical damage. Evaluations were also performed using compatible and incompatible interactions of coffee with the fungus Hemileia vastatrix (causal agent of the leaf orange rust disease) and the insect Leucoptera coffeella (coffee leaf miner). The constitutive level of PPO activity observed for the 15 genotypes ranged from 3.8 to 88 units of activity/mg protein. However, no direct relationship was found with resistance of coffee to the fungus or insect. Chlorogenic acid (5-caffeoylquinic acid), the best substrate for coffee leaf PPO, was not related to resistance, suggesting that oxidation of other phenolics by PPO might play a role, as indicated by HPLC profiles. Mechanical damage, Meja treatment, H. vastatrix fungus inoculation and L. coffeella infestation caused different responses in PPO activity. These results suggest that coffee resistance may be related to the oxidative potential of the tissue regarding the phenolic composition rather than simply to a higher PPO activity.

  9. Genetics and mapping of the R₁₁ gene conferring resistance to recently emerged rust races, tightly linked to male fertility restoration, in sunflower (Helianthus annuus L.).

    Science.gov (United States)

    Qi, L L; Seiler, G J; Vick, B A; Gulya, T J

    2012-09-01

    Sunflower oil is one of the major sources of edible oil. As the second largest hybrid crop in the world, hybrid sunflowers are developed by using the PET1 cytoplasmic male sterility system that contributes to a 20 % yield advantage over the open-pollinated varieties. However, sunflower production in North America has recently been threatened by the evolution of new virulent pathotypes of sunflower rust caused by the fungus Puccinia helianthi Schwein. Rf ANN-1742, an 'HA 89' backcross restorer line derived from wild annual sunflower (Helianthus annuus L.), was identified as resistant to the newly emerged rust races. The aim of this study was to elucidate the inheritance of rust resistance and male fertility restoration and identify the chromosome location of the underlying genes in Rf ANN-1742. Chi-squared analysis of the segregation of rust response and male fertility in F(2) and F(3) populations revealed that both traits are controlled by single dominant genes, and that the rust resistance gene is closely linked to the restorer gene in the coupling phase. The two genes were designated as R ( 11 ) and Rf5, respectively. A set of 723 mapped SSR markers of sunflower was used to screen the polymorphism between HA 89 and the resistant plant. Bulked segregant analysis subsequently located R ( 11 ) on linkage group (LG) 13 of sunflower. Based on the SSR analyses of 192 F(2) individuals, R ( 11 ) and Rf5 both mapped to the lower end of LG13 at a genetic distance of 1.6 cM, and shared a common marker, ORS728, which was mapped 1.3 cM proximal to Rf5 and 0.3 cM distal to R ( 11 ) (Rf5/ORS728/R ( 11 )). Two additional SSRs were linked to Rf5 and R ( 11 ): ORS995 was 4.5 cM distal to Rf5 and ORS45 was 1.0 cM proximal to R ( 11 ). The advantage of such an introduced alien segment harboring two genes is its large phenotypic effect and simple inheritance, thereby facilitating their rapid deployment in sunflower breeding programs. Suppressed recombination was observed in LGs 2, 9

  10. Dynamical layer decoupling in a stripe-ordered high-T(c) superconductor.

    Science.gov (United States)

    Berg, E; Fradkin, E; Kim, E-A; Kivelson, S A; Oganesyan, V; Tranquada, J M; Zhang, S C

    2007-09-21

    In the stripe-ordered state of a strongly correlated two-dimensional electronic system, under a set of special circumstances, the superconducting condensate, like the magnetic order, can occur at a nonzero wave vector corresponding to a spatial period double that of the charge order. In this case, the Josephson coupling between near neighbor planes, especially in a crystal with the special structure of La(2-x)Ba(x)CuO(4), vanishes identically. We propose that this is the underlying cause of the dynamical decoupling of the layers recently observed in transport measurements at x = 1/8.

  11. Dynamical Layer Decoupling in a Stripe-Ordered High-Tc Superconductor

    Science.gov (United States)

    Fradkin, Eduardo; Berg, Erez; Kim, Eun-Ah; Kivelson, Steve; Oganesyan, Vadim; Tranquada, John; Zhang, Shoucheng

    2008-03-01

    In the stripe-ordered state of a strongly correlated two-dimensional electronic system, under a set of special circumstances, the superconducting condensate, like the magnetic order, can occur at a nonzero wave vector corresponding to a spatial period double that of the charge order. In this case, the Josephson coupling between near neighbor planes, especially in a crystal with the special structure of La2-xBaxCuO4, vanishes identically. We propose that this is the underlying cause of the dynamical decoupling of the layers recently observed in transport measurements at x =1/8. [1] E. Berg et al, PRL 99, 127003 (2007)

  12. Dynamical Layer Decoupling in a Stripe-ordered, High T_c Superconductor

    Energy Technology Data Exchange (ETDEWEB)

    Berg, E.

    2010-04-06

    In the stripe-ordered state of a strongly-correlated two-dimensional electronic system, under a set of special circumstances, the superconducting condensate, like the magnetic order, can occur at a non-zero wave-vector corresponding to a spatial period double that of the charge order. In this case, the Josephson coupling between near neighbor planes, especially in a crystal with the special structure of La{sub 2-x}Ba{sub x}CuO{sub 4}, vanishes identically. We propose that this is the underlying cause of the dynamical decoupling of the layers recently observed in transport measurements at x = 1/8.

  13. Pyramiding the disease resistant genes to southern rust and stalk rot in maize(Zea mays L.) with marker-assisted selection

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Southern corn rust(SCR) caused by Puccinia polysora Underw and maize stalk rot caused by Pythium inflatum Matthews(MSR-2) are two destructive diseases of maize(Zea mays L.) in China.Our previous studies indicated that maize inbred line Qi319 is highly resistant to SCR but susceptible to MSR-2,while inbred line 1145 is highly resistant to MSR-2 but susceptible to SCR.The SCR resistant gene(RppQ) in Qi319 and MSR-2 resistant gene(Rpi1) in 1145 have been mapped on chromosome 10 and 4 respectively.In this resea...

  14. REVIEW - Advances on molecular studies of the interaction soybean - Asian rust

    Directory of Open Access Journals (Sweden)

    Aguida Maria Alves Pereira Morales

    2012-01-01

    Full Text Available Effective management practices are essential for controlling rust outbreaks. The main control methodused is the application of fungicides, which increases substantially the cost of production and is harmful to theenvironment. Prevention is still the best way to avoid more significant losses in soybean yields. Alternatives,such as planting resistant varieties to the fungus, are also important. The use of resistant or tolerant varietiesis the most promising method for controlling Asian soybean rust. Recently, five dominant genes resistant to soybean rust were described: Rpp1, Rpp2, Rpp3, Rpp4 and Rpp5. However, little is known about the molecular interaction among soybean plant and soybean rust and on the molecular pathway triggered by pathogen recognition. Understanding the molecular mechanisms involved in defense responses is of primary importance for planning strategies to control stress and, consequently, to increase plant adaptation to limiting conditions

  15. Stripe Order in Superconducting La2−xBaxCuO4 (0.095 x 0.155)

    Energy Technology Data Exchange (ETDEWEB)

    Hucker, M.; Zimmermann, M.v.; Gu, G.D.; Xu, Z.J.; Wen, J.S.; Xu, G.; Kang, H.J.; Zheludev, A.; Tranquada, J.M.

    2011-03-01

    The correlations between stripe order, superconductivity, and crystal structure in La{sub 2-x}Ba{sub x}CuO{sub 4} single crystals have been studied by means of x-ray and neutron diffraction as well as static magnetization measurements. The derived phase diagram shows that charge stripe order (CO) coexists with bulk superconductivity in a broad range of doping around x=1/8, although the CO order parameter and correlation length fall off quickly for x {ne} 1/8. Except for x=0.155, the onset of CO always coincides with the transition between the orthorhombic and the tetragonal or less orthorhombic low-temperature structures. The CO transition evolves from a sharp drop at low x to a more gradual transition at higher x, eventually falling below the structural phase boundary for optimum doping. With respect to the interlayer CO correlations, we find no qualitative change of the stripe stacking order as a function of doping, and in-plane and out-of-plane correlations disappear simultaneously at the transition. Similarly to the CO, the spin stripe order (SO) is also most pronounced at x=1/8. Truly static SO sets in below the CO and coincides with the first appearance of in-plane superconducting correlations at temperatures significantly above the bulk transition to superconductivity (SC). Indications that bulk SC causes a reduction of the spin or charge stripe order could not be identified. We argue that CO is the dominant order that is compatible with SC pairing but competes with SC phase coherence. Comparing our results with data from the literature, we find good agreement if all results are plotted as a function of x' instead of the nominal x, where x' represents an estimate of the actual Ba content, extracted from the doping dependence of the structural transition between the orthorhombic phase and the tetragonal high-temperature phase.

  16. Molecular tagging of a novel rust resistance gene R(12) in sunflower (Helianthus annuus L.).

    Science.gov (United States)

    Gong, L; Hulke, B S; Gulya, T J; Markell, S G; Qi, L L

    2013-01-01

    Sunflower production in North America has recently suffered economic losses in yield and seed quality from sunflower rust (Puccinia helianthi Schwein.) because of the increasing incidence and lack of resistance to new rust races. RHA 464, a newly released sunflower male fertility restorer line, is resistant to both of the most predominant and most virulent rust races identified in the Northern Great Plains of the USA. The gene conditioning rust resistance in RHA 464 originated from wild Helianthus annuus L., but has not been molecularly marked or determined to be independent from other rust loci. The objectives of this study are to identify molecular markers linked to the rust resistance gene and to investigate the allelism of this gene with the unmapped rust resistance genes present in HA-R6, HA-R8 and RHA 397. Virulence phenotypes of seedlings for the F(2) population and F(2:3) families suggested that a single dominant gene confers rust resistance in RHA 464, and this gene was designated as R(12). Bulked segregant analysis identified ten markers polymorphic between resistant and susceptible bulks. In subsequent genetic mapping, the ten markers covered 33.4 cM of genetic distance on linkage group 11 of sunflower. A co-dominant marker CRT275-11 is the closest marker distal to R(12) with a genetic distance of 1.0 cM, while ZVG53, a dominant marker linked in the repulsion phase, is proximal to R(12) with a genetic distance of 9.6 cM. The allelism test demonstrated that R(12) is not allelic to the rust resistance genes in HA-R6, HA-R8 and RHA 397, and it is also not linked to any previously mapped rust resistance genes. Discovery of the R(12) novel rust resistance locus in sunflower and associated markers will potentially support the molecular marker-assisted introgression and pyramiding of R(12) into sunflower breeding lines.

  17. Quantum magnetic excitations from stripes in copper oxide superconductors.

    Science.gov (United States)

    Tranquada, J M; Woo, H; Perring, T G; Goka, H; Gu, G D; Xu, G; Fujita, M; Yamada, K

    2004-06-03

    In the copper oxide parent compounds of the high-transition-temperature superconductors the valence electrons are localized--one per copper site--by strong intra-atomic Coulomb repulsion. A symptom of this localization is antiferromagnetism, where the spins of localized electrons alternate between up and down. Superconductivity appears when mobile 'holes' are doped into this insulating state, and it coexists with antiferromagnetic fluctuations. In one approach to describing the coexistence, the holes are believed to self-organize into 'stripes' that alternate with antiferromagnetic (insulating) regions within copper oxide planes, which would necessitate an unconventional mechanism of superconductivity. There is an apparent problem with this picture, however: measurements of magnetic excitations in superconducting YBa2Cu3O6+x near optimum doping are incompatible with the naive expectations for a material with stripes. Here we report neutron scattering measurements on stripe-ordered La1.875Ba0.125CuO4. We show that the measured excitations are, surprisingly, quite similar to those in YBa2Cu3O6+x (refs 9, 10) (that is, the predicted spectrum of magnetic excitations is wrong). We find instead that the observed spectrum can be understood within a stripe model by taking account of quantum excitations. Our results support the concept that stripe correlations are essential to high-transition-temperature superconductivity.

  18. Transport properties of stripe-ordered high Tc cuprates

    Science.gov (United States)

    Jie, Qing; Han, Su Jung; Dimitrov, Ivo; Tranquada, J. M.; Li, Qiang

    2012-11-01

    Transport measurements provide important characterizations of the nature of stripe order in the cuprates. Initial studies of systems such as La1.6-xNd0.4SrxCuO4 demonstrated the strong anisotropy between in-plane and c-axis resistivities, but also suggested that stripe order results in a tendency towards insulating behavior within the planes at low temperature. More recent work on La2-xBaxCuO4 with x = 1/8 has revealed the occurrence of quasi-two-dimensional superconductivity that onsets with spin-stripe order. The suppression of three-dimensional superconductivity indicates a frustration of the interlayer Josephson coupling, motivating a proposal that superconductivity and stripe order are intertwined in a pair-density-wave state. Complementary characterizations of the low-energy states near the Fermi level are provided by measurements of the Hall and Nernst effects, each revealing intriguing signatures of stripe correlations and ordering. We review and discuss this work.

  19. Coupling of stripes to lattice distortions in cuprates and nickelates

    Energy Technology Data Exchange (ETDEWEB)

    Huecker, M. [Condensed Matter Physics and Materials Science Department, Brookhaven National Laboratory, Upton, NY 11973 (United States)], E-mail: huecker@bnl.gov; Gu, G.D.; Tranquada, J.M. [Condensed Matter Physics and Materials Science Department, Brookhaven National Laboratory, Upton, NY 11973 (United States); Zimmermann, M. von [Hamburger Synchrotronstrahlungslabor HASYLAB at Deutsches Elektronen-Synchrotron, 22603 Hamburg (Germany); Klauss, H.-H. [Institut fuer Physik der Kondensierten Materie, TU Braunschweig, 38106 Braunschweig (Germany); Curro, N.J. [Condensed Matter and Thermal Physics, Los Alamos National Laboratory, Los Alamos, NM 87545 (United States); Braden, M. [II. Physikalisches Institut, Universitaet zu Koeln, 50937 Cologne (Germany); Buechner, B. [Leibniz-Institute for Solid State and Materials Research, IFW Dresden, 01171 Dresden (Germany)

    2007-09-01

    In recent X-ray diffraction experiments on orthorhombic nickelates, we have observed a significant coupling between the stripe correlations and the lattice distortion. In particular, the diagonal charge stripes of this insulating material exhibit a preferred orientation parallel to the orthorhombic a-axis, similar to the diagonal spin stripes in La{sub 2-x}Sr{sub x}CuO{sub 4} below the metal-insulator transition. In the light of this finding, we draw a comparison between the lightly doped parts of the phase diagrams of La{sub 2-x}Sr{sub x}CuO{sub 4} with low-temperature orthorhombic (LTO) structure, and La{sub 1.8-x}Eu{sub 0.2}Sr{sub x}CuO{sub 4} with low-temperature tetragonal (LTT) structure. In La{sub 1.8-x}Eu{sub 0.2}Sr{sub x}CuO{sub 4}, a local minimum in the Sr dependence of the LTO/LTT transition temperature, as well as reduced spin-glass transition temperatures, may be indicators for the presence of diagonal charge correlations. Above the metal-insulator transition the LTT phase is suited to pin parallel stripes, while below that transition the LTT phase seems instead to compete with the formation of diagonal stripes.

  20. Quantum magnetic excitations from stripes in copper oxide superconductors

    Science.gov (United States)

    Tranquada, J. M.; Woo, H.; Perring, T. G.; Goka, H.; Gu, G. D.; Xu, G.; Fujita, M.; Yamada, K.

    2004-06-01

    In the copper oxide parent compounds of the high-transition-temperature superconductors the valence electrons are localized-one per copper site-by strong intra-atomic Coulomb repulsion. A symptom of this localization is antiferromagnetism, where the spins of localized electrons alternate between up and down. Superconductivity appears when mobile `holes' are doped into this insulating state, and it coexists with antiferromagnetic fluctuations. In one approach to describing the coexistence, the holes are believed to self-organize into `stripes' that alternate with antiferromagnetic (insulating) regions within copper oxide planes, which would necessitate an unconventional mechanism of superconductivity. There is an apparent problem with this picture, however: measurements of magnetic excitations in superconducting YBa2Cu3O6+x near optimum doping are incompatible with the naive expectations for a material with stripes. Here we report neutron scattering measurements on stripe-ordered La1.875Ba0.125CuO4. We show that the measured excitations are, surprisingly, quite similar to those in YBa2Cu3O6+x (refs 9, 10) (that is, the predicted spectrum of magnetic excitations is wrong). We find instead that the observed spectrum can be understood within a stripe model by taking account of quantum excitations. Our results support the concept that stripe correlations are essential to high-transition-temperature superconductivity.

  1. Coupling of stripes to lattice distortions in cuprates and nickelates

    Science.gov (United States)

    Hücker, M.; Gu, G. D.; Tranquada, J. M.; Zimmermann, M. v.; Klauss, H.-H.; Curro, N. J.; Braden, M.; Büchner, B.

    2007-09-01

    In recent X-ray diffraction experiments on orthorhombic nickelates, we have observed a significant coupling between the stripe correlations and the lattice distortion. In particular, the diagonal charge stripes of this insulating material exhibit a preferred orientation parallel to the orthorhombic a-axis, similar to the diagonal spin stripes in La2-xSrxCuO4 below the metal-insulator transition. In the light of this finding, we draw a comparison between the lightly doped parts of the phase diagrams of La2-xSrxCuO4 with low-temperature orthorhombic (LTO) structure, and La1.8-xEu0.2SrxCuO4 with low-temperature tetragonal (LTT) structure. In La1.8-xEu0.2SrxCuO4, a local minimum in the Sr dependence of the LTO/LTT transition temperature, as well as reduced spin-glass transition temperatures, may be indicators for the presence of diagonal charge correlations. Above the metal-insulator transition the LTT phase is suited to pin parallel stripes, while below that transition the LTT phase seems instead to compete with the formation of diagonal stripes.

  2. Cell orientation on a stripe-micropatterned surface

    Institute of Scientific and Technical Information of China (English)

    SUN JianGuo; TANG Jian; DING JianDong

    2009-01-01

    Stripe-micropatterned surfaces have recently been a unique tool to study cell orientation. In this paper,we prepared,by the photolithography transfer technique,stable gold (Au) micropatterns on PEG hydrogel surfaces with defined cell-resistant (PEG hydrogel) and cell-adhesive (gold microstripes) proparties. 3T3 fibroblasts were cultured on Au-microstripe surfaces to observe cell adhesion and orientation. Five statistical parameters were defined and used to describe cell orientation on micropatterns.With the increase of inter-stripe distance,the orientational order parameter,the ratio of long and short axes of a cell,and the occupation fraction of cells on stripes increased gradually,whereas the spreading area of a single cell decreased. The abrupt changes of these four parameters did not happen at the same inter-distance. The adhesion ratio of a cell on Au stripes over cell spreading area did not change monotonically as a function of inter-stripe distance. The combination of the 5 statistical parameters represented well the cell orientation behaviors semi-quantitatively.

  3. 16 CFR 23.10 - Misuse of “corrosion proof,” “noncorrosive,” “corrosion resistant,” “rust proof,” “rust resistant...

    Science.gov (United States)

    2010-01-01

    ... INDUSTRIES § 23.10 Misuse of “corrosion proof,” “noncorrosive,” “corrosion resistant,” “rust proof,” “rust resistant,” etc. (a) It is unfair or deceptive to: (1) Use the terms “corrosion proof,” “noncorrosive... the product will be immune from rust and other forms of corrosion during the life expectancy of...

  4. 454-pyrosequencing of Coffea arabica leaves infected by the rust fungus Hemileia vastatrix reveals in planta-expressed pathogen-secreted proteins and plant functions in a late compatible plant-rust interaction

    OpenAIRE

    Fernandez, Diana; Tisserant, E.; Talhinhas, P.; Azinheira, H; Vieira, A.; Petitot, Anne-Sophie; Loureiro, A.; Poulain, J.; Da Silva, C; Silva, M. D. C.; Duplessis, S.

    2012-01-01

    Coffee (Coffea arabica L.), one of the key export and cash crops in tropical and subtropical countries, suffers severe losses from the rust fungus Hemileia vastatrix. The transcriptome of H. vastatrix was analysed during a compatible interaction with coffee to obtain an exhaustive repertoire of the genes expressed during infection and to identify potential effector genes. Large-scale sequencing (454-GS-FLEX Titanium) of mixed coffee and rust cDNAs obtained from 21-day rust-infected leaves gen...

  5. A key role for green rust in the Precambrian oceans and the genesis of iron formations

    Science.gov (United States)

    Halevy, I.; Alesker, M.; Schuster, E. M.; Popovitz-Biro, R.; Feldman, Y.

    2017-01-01

    Iron formations deposited in marine settings during the Precambrian represent large sinks of iron and silica, and have been used to reconstruct environmental conditions at the time of their formation. However, the observed mineralogy in iron formations, which consists of iron oxides, silicates, carbonates and sulfides, is generally thought to have arisen from diagenesis of one or more mineral precursors. Ferric iron hydroxides and ferrous carbonates and silicates have been identified as prime candidates. Here we investigate the potential role of green rust, a ferrous-ferric hydroxy salt, in the genesis of iron formations. Our laboratory experiments show that green rust readily forms in early seawater-analogue solutions, as predicted by thermodynamic calculations, and that it ages into minerals observed in iron formations. Dynamic models of the iron cycle further indicate that green rust would have precipitated near the iron redoxcline, and it is expected that when the green rust sank it transformed into stable phases within the water column and sediments. We suggest, therefore, that the precipitation and transformation of green rust was a key process in the iron cycle, and that the interaction of green rust with various elements should be included in any consideration of Precambrian biogeochemical cycles.

  6. Color-Stripe Structured Light Robust to Surface Color and Discontinuity

    CERN Document Server

    Lee, Kwang Hee; Lee, Sang Wook

    2015-01-01

    Multiple color stripes have been employed for structured light-based rapid range imaging to increase the number of uniquely identifiable stripes. The use of multiple color stripes poses two problems: (1) object surface color may disturb the stripe color and (2) the number of adjacent stripes required for identifying a stripe may not be maintained near surface discontinuities such as occluding boundaries. In this paper, we present methods to alleviate those problems. Log-gradient filters are employed to reduce the influence of object colors, and color stripes in two and three directions are used to increase the chance of identifying correct stripes near surface discontinuities. Experimental results demonstrate the effectiveness of our methods.

  7. Stable multidimensional soliton stripes in two-component Bose-Einstein condensates

    Energy Technology Data Exchange (ETDEWEB)

    Brazhnyi, Valeriy A. [Centro de Fisica do Porto, Faculdade de Ciencias, Universidade do Porto, R. Campo Alegre 687, Porto 4169-007 (Portugal); Perez-Garcia, Victor M., E-mail: victor.perezgarcia@uclm.es [Departamento de Matematicas, E. T. S. de Ingenieros Industriales, and Instituto de Matematica Aplicada a la Ciencia y la Ingenieria, Universidad de Castilla-La Mancha, 13071 Ciudad Real (Spain)

    2011-06-15

    Highlights: > Soliton-stripes (multidimensional extensions of dark solitons) are constructed in multicomponent BECs. > A second component filling the core of the stripe leads to reduced instabilities while propagating in homogeneous media. > In the presence of a trap arbitrarily long-lived stripes can be constructed by increasing the core filling. - Abstract: We discuss how to construct stable multidimensional extensions of one-dimensional dark solitons, the so-called soliton stripes, in two-species Bose-Einstein condensates in the immiscible regime. We show how using a second component to fill the core of a dark soliton stripe leads to reduced instabilities while propagating in homogeneous media. We also discuss how in the presence of a trap arbitrarily long-lived dark soliton stripes can be constructed by increasing the filling of the dark stripe core. Numerical evidences of the robustness of the dark soliton stripes in collision scenarios are also provided.

  8. A summary of information on the rust Puccinia psidii Winter (guava rust) with emphasis on means to prevent introduction of additional strains to Hawaii

    Science.gov (United States)

    Loope, Lloyd

    2010-01-01

    The neotropical rust fungus Puccinia psidii(P. psidii) was originally described from the host common guava in its native Brazil but has been found since on hosts throughout the myrtle family (Myrtaceae), including a dramatic host jump to nonnative Eucalyptus plantations. Most rust fungi are able to live only on a very narrow range of host species. P. psidii is unusual both for having a broad host range and for the intensity of its damage to susceptible young growth. This rust first got a foothold in the United States in Florida more than three decades ago. The U.S. Department of Agriculture (USDA) has since considered it a nonactionable, nonreportable pest. Hawaii and Florida are the only two states with native species in the myrtle family. Over a period of 30 years, this rust has done little damage to any of the scattered native Myrtaceae in Florida, although the host range of the rust has gradually grown to about 30 mostly nonnative species in the family, apparently because of increasing genetic variety of the rust by repeated introductions. However, Florida’s native Myrtaceae are among the roughly 1,100 neotropical species that are largely resistant to P. psidii. The 3,000 species of non-neotropical Myrtaceae of the Pacific, Australia, Asia, and Africa are expected to prove much more vulnerable to P. psidii. Little is known about the genetics or genetic strains of P. psidii, although existing literature shows that there are numerous strains that have differential ability to infect suites of host plants.

  9. Strong-Coupling and the Stripe Phase of ^3He

    Science.gov (United States)

    Wiman, Joshua J.; Sauls, J. A.

    2016-09-01

    Thin films of superfluid 3He were predicted, based on weak-coupling BCS theory, to have a stable phase which spontaneously breaks translational symmetry in the plane of the film. This crystalline superfluid, or "stripe" phase, develops as a one-dimensional periodic array of domain walls separating degenerate B phase domains. We report calculations of the phases and phase diagram for superfluid 3He in thin films using a strong-coupling Ginzburg-Landau theory that accurately reproduces the bulk 3He superfluid phase diagram. We find that the stability of the Stripe phase is diminished relative to the A phase, but the Stripe phase is stable in a large range of temperatures, pressures, confinement, and surface conditions.

  10. Charge stripes seen with X-rays in

    Science.gov (United States)

    Niemöller, T.; Ichikawa, N.; Frello, T.; Hünnefeld, H.; Andersen, N. H.; Uchida, S.; Schneider, J. R.; Tranquada, J. M.

    1999-12-01

    Superstructure reflections due to the ordering of holes into stripes in La_(1.45)Nd_(0.4)Sr_(0.15)CuO_4 have been studied with high energy x-ray diffraction. These reflections have been observed clearly for the first time in a sample which is superconducting at low temperatures (T_c = 10 K). The stripe peaks vanish above 62(5) K whereas the magnetic signal of the stripe ordering which has been seen with neutrons before is already suppressed at 45 K. Our results confirm that the ordering of spins and holes is driven by the charges as it is found in the case of La_(1.6-x)Nd_(0.4)Sr_(x)CuO_(4) at the doping level of x = 0.12.

  11. Effects of water velocity on activity of juvenile striped bass

    Energy Technology Data Exchange (ETDEWEB)

    Bowles, R.R.; Griffith, J.S.; Coutant, C.C.

    1976-07-01

    The swimming activity of juvenile striped bass (Morone saxatilis Walbaum) 8 to 80 mm long was investigated in a test chamber simulating, on a small scale, a fixed-screen cooling water intake structure. As water velocity increased from 0 to 30 cm/sec area and distance traveled by juvenile bass 10 to 80 mm long decreased. However, as water velocity increased from 0 to 3 cm/sec the area and distance covered by larval bass increased. The presence of food increased the activity of larval bass, but decreased the activity of juveniles. Area ranged by striped bass at test velocities ranging from 0 to 30 cm/sec increased in proportion to body length. Juvenile striped bass tested at acclimation temperatures between 20 and 5/sup 0/C experienced a 30% reduction of activity. Activity was also reduced as temperature increased from 20 to 30/sup 0/C.

  12. Chaotic and Arnold stripes in weakly chaotic Hamiltonian systems.

    Science.gov (United States)

    Custódio, M S; Manchein, C; Beims, M W

    2012-06-01

    The dynamics in weakly chaotic Hamiltonian systems strongly depends on initial conditions (ICs) and little can be affirmed about generic behaviors. Using two distinct Hamiltonian systems, namely one particle in an open rectangular billiard and four particles globally coupled on a discrete lattice, we show that in these models, the transition from integrable motion to weak chaos emerges via chaotic stripes as the nonlinear parameter is increased. The stripes represent intervals of initial conditions which generate chaotic trajectories and increase with the nonlinear parameter of the system. In the billiard case, the initial conditions are the injection angles. For higher-dimensional systems and small nonlinearities, the chaotic stripes are the initial condition inside which Arnold diffusion occurs.

  13. Striped phases in the holographic insulator/superconductor transition

    CERN Document Server

    Erdmenger, Johanna; Pang, Da-Wei

    2013-01-01

    We study striped phases in holographic insulator/superconductor transition by considering a spatially modulated chemical potential in AdS soliton background. Generally striped phases can develop above a critical chemical potential. When the constant leading term in the chemical potential is set to zero, a discontinuity in the plot of charge density versus chemical potential is observed in the limit of large wave vector. We explain this discontinuity using an analytical approach. When the constant leading term in the chemical potential is present, the critical chemical potential is larger than in the case of a homogeneous chemical potential, which indicates that the spatially modulated chemical potential disfavors the phase transition. This behavior is also confirmed qualitatively by analytical calculations. We also calculate the grand canonical potential and find that the striped phase is favored.

  14. Stripes in cuprate superconductors: Excitations and dynamic dichotomy

    Energy Technology Data Exchange (ETDEWEB)

    Seibold, G., E-mail: goetz@physik.tu-cottbus.de [Institut fuer Physik, BTU Cottbus, P.O. Box 101344, 03013 Cottbus (Germany); Grilli, M.; Lorenzana, J. [SMC-INFM-CNR, Dipartimento di Fisica, Universita di Roma ' La Sapienza' , P.le Aldo Moro 5, I-00185 Roma (Italy)

    2012-11-01

    We present a short account of the present experimental situation of stripes in cuprates followed by a review of our present understanding of their ground state and excited state properties. Collective modes, the dynamical structure factor, and the optical conductivity of stripes are computed using the time-dependent Gutzwiller approximation applied to realistic one band and three band Hubbard models, and are found to be in excellent agreement with experiment. On the other hand, experiments like angle-resolved photoemission and scanning tunneling microscopy show the coexistence of stripes at high energies with Fermi liquid quasiparticles at low energies. We show that a phenomenological model going beyond mean-field can reconcile this dynamic dichotomy.

  15. Distinguishing Patterns of Charge Order: Stripes or Checkerboards

    Energy Technology Data Exchange (ETDEWEB)

    Robertson, J.A.

    2010-04-06

    In two dimensions, quenched disorder always rounds transitions involving the breaking of spatial symmetries so, in practice, it can often be difficult to infer what form the symmetry breaking would take in the 'ideal,' zero disorder limit. We discuss methods of data analysis which can be useful for making such inferences, and apply them to the problem of determining whether the preferred order in the cuprates is 'stripes' or 'checkerboards.' In many cases we show that the experiments clearly indicate stripe order, while in others (where the observed correlation length is short), the answer is presently uncertain.

  16. Glyphosate sobre a resistência à ferrugem (Puccinia psidii do eucalipto Glyphosate on eucalyptus resistance to rust (Puccinia psidii

    Directory of Open Access Journals (Sweden)

    L.D. Tuffi Santos

    2007-03-01

    ça. Conclui-se que o glyphosate não afetou a resistência do eucalipto a Puccinia psidii, ocorrendo diminuição da severidade da doença em plantas expostas ao glyphosate via deriva, e que existe tolerância diferencial entre os clones ao herbicida.Glyphosate is the herbicide most applied on eucalyptus plantations for weed control, acting directly on the shikimic acid pathway, the main via for the formation of compounds connected with the natural defenses of the plant, such as lignin, salicytic acid and phytoalexins. Thus, glyphosate contact with the leaves of the plant through drift may have important consequences for disease resistance. The aim of our research was to evaluate glyphosate drift involvement with severity of rust caused by Puccinia psidii in genotypes with different levels of resistance to the pathogen, after inoculation in a controlled environment. Seedlings of four clones, two heterozygote clones resistant to rust (UFV01 and UFV02 and two homozygote clones susceptible to rust (UFV03 and UFV04 were submitted to sub-doses of 0 (control; 28.8, 57.6, 86.4 and 115.2 g ha-1 of glyphosate simulating drift. Three days after glyphosate application, the plants were inoculated with UFV01 isolated from P. psidii obtained from Eucalyptus grandis in the Itapetininga region. On day 21 after inoculation, the following parameters were evaluated: rust intensity, by means of a diagrammatic scale with four classes of severity (SO and S2 resistant to rust and S2 and S3 susceptible to rust, number of pustules per leaf area, area affected by rust, average number of urediniospores cm-2, glyphosate percentage intoxication, and average number of urediniospores/pustule. Clone UFV04 was found to be the most susceptible while UFV01 was the most tolerant to the herbicide. Drift did not change the level of resistance to rust with respect to the resistant genotypes (UFV01 and UFV02 which presented no pustule both in plants exposed to drift and control plants. Susceptibility was maintained

  17. Recent invasion of world-wide wheat growing areas by two aggressive strains of Puccinia striiformis

    DEFF Research Database (Denmark)

    Walter, Stephanie; Ali, Sajid; Justesen, Annemarie Fejer

    2012-01-01

    The ever more frequent and severe large-scale epidemics of wheat yellow/stripe rust disease (caused by Puccinia striiformis) pose a severe threat to the world’s wheat production (Hovmøller et al. 2010). The onset of a new series of world-wide wheat yellow rust epidemics in 2000 has been linked...

  18. Inhibitory Effect of Camptothecin against Rice Bacterial Brown Stripe Pathogen Acidovorax avenae subsp. avenae RS-2

    Directory of Open Access Journals (Sweden)

    Qiaolin Dong

    2016-07-01

    Full Text Available Camptothecin (CPT has anticancer, antiviral, and antifungal properties. However, there is a dearth of information about antibacterial activity of CPT. Therefore, in this study, we investigated the inhibitory effect of CPT on Acidovorax avenae subsp. avenae strain RS-2, the pathogen of rice bacterial brown stripe, by measuring cell growth, DNA damage, cell membrane integrity, the expression of secretion systems, and topoisomerase-related genes, as well as the secretion of effector protein Hcp. Results indicated that CPT solutions at 0.05, 0.25, and 0.50 mg/mL inhibited the growth of strain RS-2 in vitro, while the inhibitory efficiency increased with an increase in CPT concentration, pH, and incubation time. Furthermore, CPT treatment affected bacterial growth and replication by causing membrane damage, which was evidenced by transmission electron microscopic observation and live/dead cell staining. In addition, quantitative real-time PCR analysis indicated that CPT treatment caused differential expression of eight secretion system-related genes and one topoisomerase-related gene, while the up-regulated expression of hcp could be justified by the increased secretion of Hcp based on the ELISA test. Overall, this study indicated that CPT has the potential to control the bacterial brown stripe pathogen of rice.

  19. Research on Poplar Leaf Rust%杨树叶锈病研究

    Institute of Scientific and Technical Information of China (English)

    肖婷; 邝海菊; 何香; 兰晓君; 艾尔肯·热合曼; 古丽斯玛依·艾拜都拉

    2009-01-01

    Leaf rust caused by Melampsora larici-populina was the most widespread and serious disease of poplars,led to timber volume loss and wood quality reduction,and badly restricted the development of commodity and ecology forest.Researching on Melampsora larici-populina was introduced in this paper from aspects of distribution and host varieties of plant pathogenic fungi,physiological differentiation,host poplar resistance and molecular markers,control measures and so on.%松杨栅锈菌(Melampsora larici-populina)导致的杨树叶锈病是杨树病害中分布最广、危害最大的一种病害,它造成杨树林的材积损失和材质下降,严重制约着杨树商品林和生态林的发展.该文从病原菌的分布和寄主种类、病原菌生理分化、寄主抗锈性及分子标记、防治措施等几方面介绍了杨树叶锈病的研究.

  20. History, Epidemic Evolution, and Model Burn-In for a Network of Annual Invasion: Soybean Rust.

    Science.gov (United States)

    Sanatkar, M R; Scoglio, C; Natarajan, B; Isard, S A; Garrett, K A

    2015-07-01

    Ecological history may be an important driver of epidemics and disease emergence. We evaluated the role of history and two related concepts, the evolution of epidemics and the burn-in period required for fitting a model to epidemic observations, for the U.S. soybean rust epidemic (caused by Phakopsora pachyrhizi). This disease allows evaluation of replicate epidemics because the pathogen reinvades the United States each year. We used a new maximum likelihood estimation approach for fitting the network model based on observed U.S. epidemics. We evaluated the model burn-in period by comparing model fit based on each combination of other years of observation. When the miss error rates were weighted by 0.9 and false alarm error rates by 0.1, the mean error rate did decline, for most years, as more years were used to construct models. Models based on observations in years closer in time to the season being estimated gave lower miss error rates for later epidemic years. The weighted mean error rate was lower in backcasting than in forecasting, reflecting how the epidemic had evolved. Ongoing epidemic evolution, and potential model failure, can occur because of changes in climate, host resistance and spatial patterns, or pathogen evolution.

  1. Coffee (Coffea arabica L.) genes early expressed during infection by the rust fungus (Hemileia vastatrix).

    Science.gov (United States)

    Fernandez, Diana; Santos, Patricia; Agostini, Caroline; Bon, Marie-Claude; Petitot, Anne-Sophie; C Silva, Maria; Guerra-Guimarães, Leonor; Ribeiro, Ana; Argout, Xavier; Nicole, Michel

    2004-11-01

    SUMMARY The beverage cash crop coffee (Coffea arabica L.) is subject to severe losses caused by the rust fungus Hemileia vastatrix. In naturally resistant coffee plants, a specific hypersensitive reaction (HR) may be elicited early to stop fungal infection. To isolate host genes involved in HR, we undertook an expressed sequence tags (ESTs) analysis. Two cDNA libraries were constructed using suppression subtractive hybridization (SSH) and 527 non-redundant ESTs were generated from 784 randomly picked clones. Classification of the ESTs into several functional categories showed that more than one-quarter of the predicted proteins might encode disease resistance (R) proteins, stress- and defence-proteins, and components of signal transduction pathways. Twenty-eight differentially screened sequences (DSSs) were selected after differential hybridization of 1000 cDNA clones from each library. Investigation of the expression patterns of a subset of 13 DSSs showed higher levels of gene expression in inoculated plants compared with control plants. HR-up-regulation of transcript accumulation occurred for 9 out of the 13 genes 24 and 48 h after H. vastatrix challenge. Two genes encoded homologues of the Arabidopsis DND1 and NDR1 proteins, suggesting conservation of resistance signalling pathways in perennial plants. Other HR-regulated sequences matched receptor kinases, AP2 domain- and WRKY transcription factors, cytochromes P450, heat shock 70 proteins, glucosyltransferases and proteins of unknown function. The ESTs reported here provide a useful resource for studying coffee resistance responses and for improving C. arabica for durable disease resistance.

  2. Siim Nestor soovitab : Supreme 7aastane. White Stripes / Siim Nestor

    Index Scriptorium Estoniae

    Nestor, Siim, 1974-

    2005-01-01

    Kolmik Supreme tähistab oma 7. tegutsemisaastat 24. juunil Von Krahlis, kus toimub ka Krecki debüütalbumi "If You Live" (väljaandjaks ettevõte Umblu) esitlus. Detroidi blues-rock duo White Stripes esitleb oma uut albumit "Get Behind Me Satan" 29. juunil Tallinnas klubis Hollywood

  3. Spins, stripes, and superconductivity in hole-doped cuprates

    Science.gov (United States)

    Tranquada, John M.

    2013-08-01

    One of the major themes in correlated electron physics over the last quarter century has been the problem of high-temperature superconductivity in hole-doped copper-oxide compounds. Fundamental to this problem is the competition between antiferromagnetic spin correlations, a symptom of strong Coulomb interactions, and the kinetic energy of the doped carriers, which favors delocalization. After discussing some of the early challenges in the field, I describe the experimental picture provided by a variety of spectroscopic and transport techniques. Then I turn to the technique of neutron scattering, and discuss how it is used to determine spin correlations, especially in model systems of quantum magnetism. Neutron scattering and complementary techniques have determined the extent to which antiferromagnetic spin correlations survive in the cuprate superconductors. One experimental case involves the ordering of spin and charge stripes. I first consider related measurements on model compounds, such as La2-xSrxNiO4+δ, and then discuss the case of La2-xBaxCuO4. In the latter system, recent transport studies have demonstrated that quasi-two-dimensional superconductivity coexists with the stripe order, but with frustrated phase order between the layers. This has led to new concepts for the coexistence of spin order and superconductivity. While the relevance of stripe correlations to high-temperature superconductivity remains a subject of controversy, there is no question that stripes are an intriguing example of electron matter that results from strong correlations.

  4. Bond-Stretching Phonons in a Stripe-Ordered Nickelate

    Science.gov (United States)

    Tranquada, J. M.; Nakajima, K.; Braden, M.; Pintschovius, L.; Reichardt, W.; McQueeney, R.

    2001-03-01

    We have used neutron scattering at the Orphée Reactor, LLB, to study the bond-stretching optical phonons in a stripe-ordered single crystal of La_2-xSr_xNiO4 with x≈0.32. The stripes run along a [110] direction, at 45^circ to the Ni-O bond direction. We have measured the dispersion of the highest-energy Σ1 mode; because of twinning of the stripe domains in the tetragonal structure, we simultaneously sample phonons in directions parallel and perpendicular to the stripes. At zone center, a single strong peak appears at 21 THz (87 meV); however, on moving across the zone the mode appears to split, with half of the weight staying near 20 THz and the other half softening to ~17.5 THz at the zone boundary. The splitting is strong at the ordering wave vector, but changes little from there to the zone boundary. In the [100] direction, the Δ1 mode shows a similar softening but with no splitting. Comparisons with the cuprates will be discussed. This work supported by the U.S. DOE under Contract No. DE-AC02-98CH10886, and the U.S.-Japan Cooperative Research Program on Neutron Scattering.

  5. Charge stripes and spin correlations in copper-oxide superconductors

    Energy Technology Data Exchange (ETDEWEB)

    Tranquada, J.M.

    1997-05-01

    To obtain superconductivity in a layered copper-oxide compound, it is necessary to introduce charge carriers into the antiferromagnetic CuO{sub 2} planes. Recent neutron diffraction studies of the system La{sub 1.6-x}Nd{sub 0.4}Sr{sub x}CuO{sub 4} provide evidence that the dopant-induced holes choose to segregate into periodically-spaced stripes which separate antiferromagnetic domains, in a manner similar to that found in hole-doped La{sub 2}NiO{sub 4}. The charge and spin stripe modulations are identified by the appearance of scattering at incommensurate positions. In the Nd-doped system, elastic scattering is observed, corresponding to static stripes. In pure La{sub 2-x}Sr{sub x}CuO{sub 4}, the magnetic scattering that is observed is purely inelastic. Where samples with and without Nd, but with the same Sr concentration, have been measured, the incommensurate (IC) splittings of the magnetic signal are found to be essentially identical. It has been proposed that the spin correlations in the two systems are fundamentally the same, thus implying similar charge correlations. The static nature of the stripes in the Nd-doped system is attributed to pinning of the otherwise dynamic correlations by a special distortion of the lattice. That distortion is driven by purely ionic interactions and is stabilized by the smaller ionic radius of the substituted Nd.

  6. Charge Stripes and Antiferromagnetism in Copper-Oxide Superconductors

    Energy Technology Data Exchange (ETDEWEB)

    Tranquada, J.M.

    1997-12-31

    Superconducting cuprate compounds are obtained by doping holes into antiferromagnetic insulators. Neutron scattering studies have provided evidence that the doped holes tend to segregate into charge stripes, which act like domain walls between antiferromagnetic regions. The interaction between the spatially segregated holes and the magnetic domains may be responsible for the strong pairing interaction found in the cuprates.

  7. Design and construction of thermal striping test facility

    Energy Technology Data Exchange (ETDEWEB)

    Han, D. H.; Kim, J. M.; Nam, H. Y.; Choi, J. H.; Choi, B. H.; Jeong, J. Y.; Jeong, K. C.; Park, J. H.; Kim, T. J.; Kim, B. H

    2003-12-01

    Test facility was designed and constructed to generate of experimental data for the validation of turbulence model for analyzing thermal striping phenomena. Test facility consists mainly of test section, heat transfer system and control system. In this report design and construction process of test facility was described in detail.

  8. LEEM image phase contrast of MnAs stripes

    Energy Technology Data Exchange (ETDEWEB)

    Pang, A.B., E-mail: pangangbo@gmail.com [School of Physics and Electronic Information, Huaibei Normal University, Huaibei, Anhui, 235000 (China); Department of Physics, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong (China); Pavlovska, A. [Department of Physics, Arizona State University, Tempe, AZ 85287-1504 (United States); Däweritz, L. [Paul-Drude-Institut für Festkörperelektronik, Hausvogteiplatz 5-7, D-10117 Berlin (Germany); Locatelli, A. [Sincrotrone Trieste, S.C.p.a., Basovizza, Trieste 34012 (Italy); Bauer, E. [Department of Physics, Arizona State University, Tempe, AZ 85287-1504 (United States); Altman, M.S. [Department of Physics, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong (China)

    2013-07-15

    Low energy electron microscopy (LEEM) imaging of strained MnAs layers epitaxially grown on GaAs(001) reveals striped contrast features that become more pronounced and vary systematically in width with increasing defocus, but that are completely absent in focus. Weaker subsidiary fringe-like features are observed along the stripe lengths, while asymmetric contrast reversal occurs between under-focus and over-focus conditions. A Fourier optics calculation is performed that demonstrates that these unusual observations can be attributed to a phase contrast mechanism between the hexagonal α phase and orthorhombic β phase regions of the MnAs film, which self-organize into a periodic stripe array with ridge-groove morphology. The unequal widths of the α and β phase regions are determined accurately from the through focus series, while the height variation in this system can also be determined in principle from the energy dependence of contrast. - Highlights: • LEEM image of MnAs/GaAs(001) reveals striped contrast features varying with defocus. • Duplex contrast and asymmetric reversal between under- and over-focus are observed. • Fourier optics calculation attributes the contrast to a phase contrast mechanism. • Widths of the α and β phase regions are determined accurately. • Height variation in this system can also be determined in principle.

  9. Striped gold nanoparticles: New insights from molecular dynamics simulations

    Science.gov (United States)

    Velachi, Vasumathi; Bhandary, Debdip; Singh, Jayant K.; Cordeiro, M. Natália D. S.

    2016-06-01

    Recent simulations have improved our knowledge of the molecular-level structure and hydration properties of mixed self-assembled monolayers (SAMs) with equal and unequal alkyl thiols at three different arrangements, namely, random, patchy, and Janus. In our previous work [V. Vasumathi et al., J. Phys. Chem. C 119, 3199-3209 (2015)], we showed that the bending of longer thiols over shorter ones clearly depends on the thiols' arrangements and chemical nature of their terminal groups. In addition, such a thiol bending revealed to have a strong impact on the structural and hydration properties of SAMs coated on gold nanoparticles (AuNPs). In this paper, we extend our previous atomistic simulation study to investigate the bending of longer thiols by increasing the stripe thickness of mixed SAMs of equal and unequal lengths coated on AuNPs. We study also the effect of stripe thickness on the structural morphology and hydration of the coated SAMs. Our results show that the structural and hydration properties of SAMs are affected by the stripe thickness for mixtures of alkyl thiols with unequal chain length but not for equal length. Hence, the stability of the stripe configuration depends on the alkyl's chain length, the length difference between the thiol mixtures, and solvent properties.

  10. Nonreciprocal spin wave spectroscopy of thin Ni–Fe stripes

    NARCIS (Netherlands)

    Khalili Amiri, P.K.; Rejaei, B.; Vroubel, M.; Zhuang, Y.

    2007-01-01

    The authors report on the observation of nonreciprocal spin wave propagation in a thin ( ∼ 200 nm) patterned Ni–Fe stripe. The spin wave transmission spectrum is measured using a pair of microstrip lines as antennas. The nonreciprocity of surface wave dispersion brought about by an adjacent aluminum

  11. Development of a new anti-rust paint for rusted metal%新型带锈防锈漆的研制

    Institute of Scientific and Technical Information of China (English)

    应鹏展; 王雅晴

    2001-01-01

    A new anti-rust paint for rusted material was developed by addition of zinc phosphate, zinc oxide, aluminum tripolyphosphate, barium chromate and other auxiliaries, which result in phosphating, and chromating of rusted metal surface to obtain continuous, uniform and fine protective film. Addition of 0.05%~0.10% cobalt and manganese dryer can greatly improve drying rate of paint film. The anti-rust paint is stable in long-term storage and its parameters meet the requirement of national standard. Preparation of the title paint is simple and low cost.%研制了一种新型带锈防锈漆。通过加入磷酸锌、氧化锌、三聚磷酸铝、铬酸钡等助剂,使金属带锈表面锈层磷化、钝化,形成连续、均匀、致密的保护层。加入0.05%~0.10%的钴锰催干剂,显著提高了漆膜的干燥速度。该带锈防锈漆制备工艺简单、成本低、长期贮存性能稳定,各项指标均符合国家标准。

  12. The Lr46 gene conditions partial adult-plant resistance to yellow rust, stem rust, and powdery mildew in Thatcher wheat

    Science.gov (United States)

    Disease resistance is a critical goal for many wheat improvement programs. Wheat cultivars are often attacked by multiple diseases, including the rusts and powdery mildew. F6 recombinant inbred lines (RILs) derived from the cross of Thatcher*3/CI13227 that had been previously characterized as having...

  13. Expression of a Thatcher wheat adult plant stem rust resistance QTL on chromosome arm 2BL is enhanced by Lr34

    Science.gov (United States)

    An F6 recombinant inbred line (RIL) spring wheat population derived from RL6071, a stem rust susceptible line and RL6058, a backcross line of Thatcher wheat with Lr34 that is highly resistant to stem rust, was evaluated for adult plant stem rust resistance in North Dakota in 1999, and in Kenya in 20...

  14. A baseline analysis of the distribution, host-range, and severity of the rust Puccinia Psidii in the Hawaiian islands, 2005-2010

    Science.gov (United States)

    Anderson, Robert C.

    2012-01-01

    Puccinia psidii was first described by Winter (1884) on guava (Psidium guajava L.) in Brazil. The rust is still a major pest of native guava in Brazil and is often referred to as “guava rust” internationally. It is unusual among rust fungi because of its broad and ever-expanding host-range within the Myrtaceae plant family (Simpson et al. 2006). The pathogen is regarded as a major threat to Eucalyptus plantations and other Myrtaceae worldwide (Coutinho et al. 1998, Grgurinovic et al. 2006, Glen et al. 2007). Infections of leaves and meristems are particularly severe on susceptible seedlings, cuttings, young trees, and coppice, causing plants to be stunted and multi-branched, inhibiting normal growth and development, and sometimes causing death to young seedlings (Booth et al. 2000, Rayachhetry et al. 2001). The fungus has expanded its host-range in Brazil, affecting both native and introduced Myrtaceae (Coutinho et al. 1998). Since its discovery in 1884, P. psidii has continually been discovered to have an expanding host-range within the Myrtaceae, affecting hosts throughout much of South and Central America and the Caribbean. Spreading out originally from Brazil in 1884, the fungus has been reported on hosts in the following countries (first record in parentheses): Paraguay (1884), Uruguay (1889), Ecuador (1891), Colombia (1913), Puerto Rico (1913), Cuba (1926), Dominican Republic (1933), Venezuela (1934), Jamaica (1936), Argentina (1946), Dominica (1948), Trinidad and Tobago (1951), Guatemala (1968), United States (Florida; 1977), Mexico (1981), El Salvador (1987), and Costa Rica (1998) (Simpson et al. 2006). It is possible that P. psidii was present in El Salvador and Costa Rica prior to 1980, but was not reported until 1987 and 1998, respectively. Until recently, Puccinia psidii was restricted to the Neotropics, Mexico, and the state of Florida in the United States. While the rust has been present in Florida for over 30 years, only recently has it spread

  15. QTL mapping provides evidence for lack of association of the avoidance of leaf rust in Hordeum chilense with stomata density

    NARCIS (Netherlands)

    Vaz Patto, M.C.; Rubiales, D.; Martin, A.; Hernandez, P.; Lindhout, W.H.; Niks, R.E.; Stam, P.

    2003-01-01

    In cereals, rust fungi are among the most harmful pathogens. Breeders usually rely on short-lived hypersensitivity resistance. As an alternative, "avoidance" may be a more durable defence mechanism to protect plants to rust fungi. In Hordeum chilense avoidance is based on extensive wax covering of s

  16. Transformation of hydroxycarbonate green rust into crystalline iron (hydr)oxides: Influences of reaction conditions and underlying mechanisms

    NARCIS (Netherlands)

    Wang, Xiaoming; Liu, Fan; Tan, W.; Feng, Xionghan; Koopal, L.K.

    2013-01-01

    Green rusts (GRs) are found as intermediate products between FeII hydroxides and FeIII oxyhydroxides in various anoxic environments. The transformation of hydroxycarbonate green rust GR1(CO32-) by air oxidation at different conditions and the underlying mechanisms were investigated using X-ray diffr

  17. Genetic mapping of rust resistance genes in confection sunflower line HA-R6 and oilseed line RHA 397

    Science.gov (United States)

    Few widely effective resistance sources to sunflower rust, incited by Puccinia helianthi Schwein., have been identified in confection sunflower (Helianthus annuus L.). The USDA inbred line HA-R6 is one of the few confection sunflower lines resistant to rust. A previous allelism test indicated that r...

  18. Screening of New Resistance Sources of Wheat Leaf Rust%小麦叶锈病新抗源筛选

    Institute of Scientific and Technical Information of China (English)

    刘成; 闫红飞; 宫文萍; 李光蓉; 刘大群; 杨足君

    2013-01-01

    小麦叶锈病是小麦生产的主要病害之一,发病严重时往往导致大幅度减产.叶锈菌生理小种的变异易导致抗病基因抗性的丧失,因此不断获得新抗源对小麦抗病育种至关重要.小麦近缘植物中含有丰富的小麦育种所需的抗病基因.本研究从小麦-近缘植物双二倍体、附加系、代换系或易位系等创新种质中筛选出小麦叶锈病新抗源,为利用这些新抗源打下基础.苗期对116份供试材料人工接种美国堪萨斯州流行的小麦叶锈菌混合生理小种(Lrcomp),其中部分材料人工接种09-9-1441-1等5个中国当前流行的叶锈菌生理小种进行抗性鉴定,筛选获得新抗源.116份种质中,31份免疫、近免疫或高抗Lrcomp.含有希尔斯山羊草、尾状山羊草、拟斯卑尔脱山羊草、两芒山羊草、卵穗山羊草、沙融山羊草、柱穗山羊草、顶芒山羊草、小伞山羊草、偏凸山羊草、中间偃麦草、茸毛偃麦草、长穗偃麦草、粗穗披碱草、栽培黑麦、非洲黑麦、提莫菲维小麦染色质的部分种质免疫或高抗Lrcomp,而含二角山羊草、无芒山羊草、沙生冰草、多年生簇毛麦和1年生簇毛麦染色质的种质表现中感至高感Lrcomp.希尔斯山羊草4S染色体、尾状山羊草C#1和D#1染色体和两芒山羊草、顶芒山羊草中可能含有未被报道的抗Lr-comp的新基因,值得进一步向小麦转育.小麦-粗穗披碱草1HtS.1BL罗伯逊易位系对Lrcomp及09-9-1441-1和09-9-1426-1等5个中国当前流行叶锈菌生理小种近免疫,值得利用染色体工程等方法获得小片段抗病易位系应用于我国小麦抗叶锈育种.%Wheat leaf rust,one of the most major diseases of wheat,greatly reduce wheat yield when wheat cultivars are infected.It is important to continuously screen and obtain new resistance sources for wheat breeding due to the resistance losses caused by mutant of leaf rust races.Wheat-relatives harbor resistance

  19. DE-STRIPING FOR TDICCD REMOTE SENSING IMAGE BASED ON STATISTICAL FEATURES OF HISTOGRAM

    Directory of Open Access Journals (Sweden)

    H.-T. Gao

    2016-06-01

    Full Text Available Aim to striping noise brought by non-uniform response of remote sensing TDI CCD, a novel de-striping method based on statistical features of image histogram is put forward. By analysing the distribution of histograms,the centroid of histogram is selected to be an eigenvalue representing uniformity of ground objects,histogrammic centroid of whole image and each pixels are calculated first,the differences between them are regard as rough correction coefficients, then in order to avoid the sensitivity caused by single parameter and considering the strong continuity and pertinence of ground objects between two adjacent pixels,correlation coefficient of the histograms is introduces to reflect the similarities between them,fine correction coefficient is obtained by searching around the rough correction coefficient,additionally,in view of the influence of bright cloud on histogram,an automatic cloud detection based on multi-feature including grey level,texture,fractal dimension and edge is used to pre-process image.Two 0-level panchromatic images of SJ-9A satellite with obvious strip noise are processed by proposed method to evaluate the performance, results show that the visual quality of images are improved because the strip noise is entirely removed,we quantitatively analyse the result by calculating the non-uniformity ,which has reached about 1% and is better than histogram matching method.

  20. Striped-tailed Yellow-finch nesting success in abandoned mining pits from central Brazilian cerrado

    Directory of Open Access Journals (Sweden)

    DT. Gressler

    Full Text Available Suitability of degraded areas as breeding habitats can be tested through assessment of nest predation rates. In this study we estimated nest success in relation to several potential predictors of nest survival in the Stripe-tailed Yellow-finch (Sicalis citrina breeding in abandoned mining pits at Brasília National Park. We monitored 73 nests during the 2007-breeding season. Predation was the main cause of nest failure (n = 48, 66%; while six nests were abandoned (8% and 19 nests produced young (26%. Mayfield’s daily survival rates and nest success were 0.94 and 23%, respectively. Our results from nest survival models on program MARK indicated that daily survival rates increase linearly towards the end of the breeding season and decrease as nests aged. None of the nest individual covariates we tested - nest height, nest size, nest substrate, and edge effect - were important predictors of nest survival; however, nests placed on the most common plant tended to have higher survival probabilities. Also, there was no observer effect on daily survival rates. Our study suggests that abandoned mining pits may be suitable alternative breeding habitats for Striped-tailed Yellow-finches since nest survival rates were similar to other studies in the central cerrado region.

  1. De-Striping for Tdiccd Remote Sensing Image Based on Statistical Features of Histogram

    Science.gov (United States)

    Gao, Hui-ting; Liu, Wei; He, Hong-yan; Zhang, Bing-xian; Jiang, Cheng

    2016-06-01

    Aim to striping noise brought by non-uniform response of remote sensing TDI CCD, a novel de-striping method based on statistical features of image histogram is put forward. By analysing the distribution of histograms,the centroid of histogram is selected to be an eigenvalue representing uniformity of ground objects,histogrammic centroid of whole image and each pixels are calculated first,the differences between them are regard as rough correction coefficients, then in order to avoid the sensitivity caused by single parameter and considering the strong continuity and pertinence of ground objects between two adjacent pixels,correlation coefficient of the histograms is introduces to reflect the similarities between them,fine correction coefficient is obtained by searching around the rough correction coefficient,additionally,in view of the influence of bright cloud on histogram,an automatic cloud detection based on multi-feature including grey level,texture,fractal dimension and edge is used to pre-process image.Two 0-level panchromatic images of SJ-9A satellite with obvious strip noise are processed by proposed method to evaluate the performance, results show that the visual quality of images are improved because the strip noise is entirely removed,we quantitatively analyse the result by calculating the non-uniformity ,which has reached about 1% and is better than histogram matching method.

  2. Sustained eruptions on Enceladus explained by turbulent dissipation in tiger stripes

    CERN Document Server

    Kite, Edwin S

    2016-01-01

    Spacecraft observations suggest that the plumes of Saturn's moon Enceladus draw water from a subsurface ocean, but the sustainability of conduits linking ocean and surface is not understood. Observations show sustained (though tidally modulated) fissure eruptions throughout each orbit, and since the 2005 discovery of the plumes. Peak plume flux lags peak tidal extension by $\\sim$1 radian, suggestive of resonance. Here we show that a model of the tiger stripes as tidally-flexed slots that puncture the ice shell can simultaneously explain the persistence of the eruptions through the tidal cycle, the phase lag, and the total power output of the tiger stripe terrain, while suggesting that the eruptions are maintained over geological timescales. The delay associated with flushing and refilling of \\emph{O}(1) m-wide slots with ocean water causes erupted flux to lag tidal forcing and helps to buttress slots against closure, while tidally pumped in-slot flow leads to heating and mechanical disruption that staves off ...

  3. Visualization analysis of tiger-striped flow mark generation phenomena in injection molding

    Science.gov (United States)

    Owada, Shigeru; Yokoi, Hidetoshi

    2016-03-01

    The generation mechanism of tiger-striped flow marks of polypropylene (PP)/rubber/talc blends in injection molding was investigated by dynamic visualization analysis in a glass-inserted mold. The analysis revealed that the behavior of the melt flow front correlates with the flow mark generation. The cloudy part in the tiger-striped flow marks corresponded to the low transcription rate area of the melt diverging near the cavity wall, while the glossy part corresponded to the high transcription rate area of the melt converging toward the cavity wall side. The melt temperature at the high transcription rate area was slightly lower than that at the low transcription rate area. These phenomena resulted due to the difference in the temperature of the melt front that was caused by the asymmetric fountain flow. These results suggest the followings; At the moment when the melt is broken near the one side of cavity wall due to piling the extensional strains up to a certain level, the melt spurts out near the broken side. It results in generating asymmetric fountain flow temporarily to relax the extensional front surface, which moves toward the opposite side to form the high transcription area.

  4. Gall production on hawthorns caused by Gymnosporangium spp.in Hatay province, Turkey

    Science.gov (United States)

    Three hawthorn and related rust diseases caused by Gymnosporangium confusum on Crataegus monogyna, G. clavariiforme on C. orientalis, and G. sabinae on Pyrus communis were detected in Hatay province, Turkey. Gymnosporangium confusum was also found causing telial galls on Juniperus communis. Gymnospo...

  5. The occurrence of bleaching stripe disease in Gracilaria corticata and controlling of the disease using quorum quenching approach.

    Science.gov (United States)

    Tanwar, Nitu; Singh, Ravindra Pal; Das, Arun Kumar; Gadhvi, Indra Kumar

    2013-05-08

    In the present study, the Gram-negative bacteria Vibrio and Pseudoalteromonas species associated with Gracilaria corticata found to be opportunistic pathogens that caused bleaching stripe disease on its host. Consortium of these pathogens induced maximum disease symptoms with 27.3 mm long bleaching stripe. Presence of Gram-positive bacteria Bacillus reduced the disease appearances in the co-culture of Gram-negative bacteria. Each Gram-negative bacteria had capability to produce two different types of AHLs. For the first time found that in the addition of (Z-) - 4- Bromo- 5- (bromomethylene) - 2(5H)- furanone with co-culture of pathogenic bacteria and host fronds significantly minimized the bleaching stripe symptoms. Incubating of pathogenic bacteria with 8 and 10 μm ml(-1) of furanone did not able to induce disease symptoms. The present study will help to understand the chemical interaction between Gram- positive and negative bacteria in marine environment. This article is protected by copyright. All rights reserved.

  6. Stripe-PZT Sensor-Based Baseline-Free Crack Diagnosis in a Structure with a Welded Stiffener

    Directory of Open Access Journals (Sweden)

    Yun-Kyu An

    2016-09-01

    Full Text Available This paper proposes a stripe-PZT sensor-based baseline-free crack diagnosis technique in the heat affected zone (HAZ of a structure with a welded stiffener. The proposed technique enables one to identify and localize a crack in the HAZ using only current data measured using a stripe-PZT sensor. The use of the stripe-PZT sensor makes it possible to significantly improve the applicability to real structures and minimize man-made errors associated with the installation process by embedding multiple piezoelectric sensors onto a printed circuit board. Moreover, a new frequency-wavenumber analysis-based baseline-free crack diagnosis algorithm minimizes false alarms caused by environmental variations by avoiding simple comparison with the baseline data accumulated from the pristine condition of a target structure. The proposed technique is numerically as well as experimentally validated using a plate-like structure with a welded stiffener, reveling that it successfully identifies and localizes a crack in HAZ.

  7. Reflexion M\\"ossbauer analysis of the in situ oxidation products hydroxycarbonate green rust

    CERN Document Server

    Naille, Sebastien; Louber, Didier; Jean, Paul Moulin; Ruby, Christian; 10.1088/1742-6596/217/1/012084

    2010-01-01

    The purpose of this study is to determine the nature of the oxidation products of FeII-III hydroxycarbonate FeII4FeIII2(OH)12CO3~3H2O (green rust GR(CO32-)) by using the miniaturised M\\"ossbauer spectrometer MIMOS II. Two M\\"ossbauer measurements methods are used: method (i) with green rust pastes coated with glycerol and spread into Plexiglas sample holders, and method (ii) with green rust pastes in the same sample holders but introduced into a gas-tight cell with a beryllium window under a continuous nitrogen flow. Method (ii) allows us to follow the continuous deprotonation of GR(CO32-) into the fully ferric deprotonated form FeIII6O4(OH)8CO3~3H2O by adding the correct amount of H2O2, without any further oxidation or degradation of the samples.

  8. Sonora exploratory study for the detection of wheat-leaf rust

    Science.gov (United States)

    Payne, R. W. (Principal Investigator)

    1980-01-01

    The applicability of LANDSAT remote sensing technology to the detection of a wheat-leaf-rust epidemic in Sonora, Mexico, during 1977 was investigated. LANDSAT data acquired during crop years 1975-76 and 1976-77 were clustered, classified, and analyzed in order to detect agricultural changes. Analysis of 1977 data indicates a significant proportion of the identified wheat is stressed (potentially rust-infected). Additional analyses show a significant increase in fallowing during the year, as well as a substantial decrease in reservoir levels in the Sonora agricultural region. Ground observations are required to substantiate these analyses. The possibility exists that heat-rust is not LANDSAT detectable and that the clusters identified as containing stressed signatures represent different varieties of wheat or perhaps nonwheat crops.

  9. Symptoms of pests, rust and other disorders on leaves of willow fertilised with wastewater, urine or sewage sludge

    Energy Technology Data Exchange (ETDEWEB)

    Aahman, Inger [Faculty of Landscape Planning, Horticulture and Agricultural Science, Swedish University of Agricultural Sciences, P.O. Box 44, SE-23053 Alnarp (Sweden); Wilson, Fiona [DOE Environment and Heritage Service, Water Management Unit, Agricultural Regulations Team, 17 Antrim Road, Lisburn BT28 3AL (United Kingdom)

    2008-11-15

    Willow (Salix viminalis) irrigated with three different dosages of wastewater has been investigated for leaf damages in four plantations located in Sweden, Northern Ireland, France and Greece, during 3 consecutive years. Control treatments were clean water and/or no water. Additionally, the plantation in Sweden included a human urine/water mix treatment and the one in N. Ireland a sewage sludge treatment. Few effects of the treatments were found. In the Greek trial, all treatments were affected by abiotic stress causing leaf discolouration, necrosis and leaf curling, but the control treatment was least affected. Mite infestations were also less prevalent in the control plots there. In the French trial, control leaves were less galled by Dasineura marginemtorquens than leaves from the lowest dose of wastewater but not compared to the two higher doses of wastewater, during 1 of the 3 years. At the same site, but in another year, Melampsora rust infection was least developed at the highest dose of wastewater but only significantly so when compared to the intermediate dose of wastewater. Urine/water treatment resulted in more rust and leaf margin damages than the control treatments in 1 year. Also, leaf spotting by leafhoppers tended to be more prevalent on the urine treatment. However, since the urine fertilisation favours willow growth as well, a somewhat enhanced biotic damage to leaves is probably no reason for avoiding this application in full-scale plantations. Damage by chrysomelid beetles was very common in the French and the N. Irish plantations, but no significant differences between treatments were found. Neither were there any treatment effects on symptoms by aphids. (author)

  10. Rust resistance in Arabic Coffee cultivars in northern Paraná

    Directory of Open Access Journals (Sweden)

    Leandro Del Grossi

    2013-02-01

    Full Text Available The objective of the study was to evaluate the resistance to rust in coffee cultivars developed by research institutes of Brazil in Paraná state. Resistance to the local leaf rust races was assessed in high disease intensity field conditions at Londrina and Congonhinhas in 2009 and 2010.The cultivars were developed by the EPAMIG/UFV, IAPAR, IAC and MAPA/Procafé. The resistant standard 'IAPAR 59' and the susceptible standards Catuaí Vermelho IAC 144' and 'Bourbon Amarelo' were used. A randomized block design with three replications and plots with 10 plants was used. A scale from 1 to 5 based on the rust intensity was used to evaluate the resistance. The Catiguá MG 1, Catiguá MG 2, IAPAR 59, IPR 98, IPR 104, Palma II, Paraíso H-419-10-6-2-5-1, Paraíso H-419-10-6-2-10-1, Paraíso H-419-10-6-2-12-1, Pau Brasil MG 1 and Sacramento MG 1 cultivars presented complete resistance to rust at Londrina and Congonhinhas. The cultivars derived from the Catucaí germplasm were susceptible or showed different levels of partial resistance. Partial resistance to the rust was observed in several coffees derived from "Hibrido de Timor". 'Acauã' and 'Obatã IAC 1669-20' presented complete resistance at Londrina, but at Congonhinhas, they were partially resistant, indicating that different rust races have occurred at these two locations.

  11. Transferability of SSR markers from related Uredinales species to the coffee rust Hemileia vastatrix.

    Science.gov (United States)

    Cristancho, M; Escobar, C

    2008-10-28

    The aim of the present research was to test the transferability of simple sequence repeat (SSR) markers developed in two Uredinales species to Hemileia vastatrix, coffee rust. The development of efficient techniques for the identification of H. vastatrix isolates is imperative, given the continuous development of new races. The transferability of 25 SSR markers developed in the related Uredinales species Puccinia coronata f. sp lolli and Melampsora linii to H. vastatrix was tested. A low level of transferability of SSRs was detected, and only 4 potential markers that can be used to fingerprint the coffee rust races were identified.

  12. Annotation of a hybrid partial genome of the Coffee Rust (Hemileia vastatrix contributes to the gene repertoire catalogue of the Pucciniales

    Directory of Open Access Journals (Sweden)

    Marco Aurelio Cristancho

    2014-10-01

    Full Text Available Coffee leaf rust caused by the fungus Hemileia vastatrix is the most damaging disease to coffee worldwide. The pathogen has recently appeared in multiple outbreaks in coffee producing countries resulting in significant yield losses and increases in costs related to its control. New races/isolates are constantly emerging as evidenced by the presence of the fungus in plants that were previously resistant. Genomic studies are opening new avenues for the study of the evolution of pathogens, the detailed description of plant-pathogen interactions and the development of molecular techniques for the identification of individual isolates. For this purpose we sequenced 8 different H. vastatrix isolates using NGS technologies and gathered partial genome assemblies due to the large repetitive content in the coffee rust hybrid genome; 74.4% of the assembled contigs harbor repetitive sequences. A hybrid assembly of 333Mb was built based on the 8 isolates; this assembly was used for subsequent analyses.Analysis of the conserved gene space showed that the hybrid H. vastatrix genome, though highly fragmented, had a satisfactory level of completion with 91.94% of core protein-coding orthologous genes present. RNA-Seq from urediniospores was used to guide the de novo annotation of the H. vastatrix gene complement. In total, 14,445 genes organized in 3,921 families were uncovered; a considerable proportion of the predicted proteins (73.8% were homologous to other Pucciniales species genomes. Several gene families related to the fungal lifestyle were identified, particularly 483 predicted secreted proteins that represent candidate effector genes and will provide interesting hints to decipher virulence in the coffee rust fungus. The genome sequence of Hva will serve as a template to understand the molecular mechanisms used by this fungus to attack the coffee plant, to study the diversity of this species and for the development of molecular markers to distinguish

  13. Annotation of a hybrid partial genome of the coffee rust (Hemileia vastatrix) contributes to the gene repertoire catalog of the Pucciniales.

    Science.gov (United States)

    Cristancho, Marco A; Botero-Rozo, David Octavio; Giraldo, William; Tabima, Javier; Riaño-Pachón, Diego Mauricio; Escobar, Carolina; Rozo, Yomara; Rivera, Luis F; Durán, Andrés; Restrepo, Silvia; Eilam, Tamar; Anikster, Yehoshua; Gaitán, Alvaro L

    2014-01-01

    Coffee leaf rust caused by the fungus Hemileia vastatrix is the most damaging disease to coffee worldwide. The pathogen has recently appeared in multiple outbreaks in coffee producing countries resulting in significant yield losses and increases in costs related to its control. New races/isolates are constantly emerging as evidenced by the presence of the fungus in plants that were previously resistant. Genomic studies are opening new avenues for the study of the evolution of pathogens, the detailed description of plant-pathogen interactions and the development of molecular techniques for the identification of individual isolates. For this purpose we sequenced 8 different H. vastatrix isolates using NGS technologies and gathered partial genome assemblies due to the large repetitive content in the coffee rust hybrid genome; 74.4% of the assembled contigs harbor repetitive sequences. A hybrid assembly of 333 Mb was built based on the 8 isolates; this assembly was used for subsequent analyses. Analysis of the conserved gene space showed that the hybrid H. vastatrix genome, though highly fragmented, had a satisfactory level of completion with 91.94% of core protein-coding orthologous genes present. RNA-Seq from urediniospores was used to guide the de novo annotation of the H. vastatrix gene complement. In total, 14,445 genes organized in 3921 families were uncovered; a considerable proportion of the predicted proteins (73.8%) were homologous to other Pucciniales species genomes. Several gene families related to the fungal lifestyle were identified, particularly 483 predicted secreted proteins that represent candidate effector genes and will provide interesting hints to decipher virulence in the coffee rust fungus. The genome sequence of Hva will serve as a template to understand the molecular mechanisms used by this fungus to attack the coffee plant, to study the diversity of this species and for the development of molecular markers to distinguish races/isolates.

  14. Sensitivity of juvenile striped bass to chemicals used in aquaculture

    Energy Technology Data Exchange (ETDEWEB)

    Bills, T.D.; Marking, L.L.; Howe, G.E.

    1993-01-01

    Efforts to restore anadromous striped bass (Morone saxatilis) populations by the U.S. Fish and Wildlife Service and other agencies over the past 20 years have concentrated on hatchery culture to supplement dwindling natural reproduction. Adult fish captured for artificial spawning are stressed by handling and crowding in rearing ponds and are often exposed to therapeutants, anesthetics, disinfectants, and herbicides used in fish culture. The authors determined the toxicity of 17 fishery chemicals (chloramine-T, erythromycin, formalin, Hyamine 3500, Roccal, malachite green, sulfamerazine, benzocaine, etomidate, Finquel (MS-222), metomidate, quinaldine sulfate, chlorine, potassium permanganate, Aquazine, copper sulfate, and Rodeo) to striped bass fry (average weight = 1 g) in reconstituted water (total hardness 40 mg/L) at 12 degrees C. The 96-h LC50's (concentration calculated to produce 50% mortality in a population) ranged from 0.129 mg/L for malachite green to 340 mg/L for erythromycin.

  15. Adult neurogenesis in the four-striped mice (Rhabdomys pumilio)

    Institute of Scientific and Technical Information of China (English)

    Olatunbosun O Olaleye; Amadi O Ihunwo

    2014-01-01

    In this study, we investigated non-captive four-striped mice (Rhabdomys pumilio) for evidence that adult neurogenesis occurs in the adult brain of animal models in natural environment. Ki-67 (a marker for cell proliferation) and doublecortin (a marker for immature neurons) immunos-taining conifrmed that adult neurogenesis occurs in the active sites of subventricular zone of the lateral ventricle with the migratory stream to the olfactory bulb, and the subgranular zone of the dentate gyrus of the hippocampus. No Ki-67 proliferating cells were observed in the striatum substantia nigra, amygdala, cerebral cortex or dorsal vagal complex. Doublecortin-immunore-active cells were observed in the striatum, third ventricle, cerebral cortex, amygdala, olfactory bulb and along the rostral migratory stream but absent in the substantia nigra and dorsal vagal complex. The potential neurogenic sites in the four-striped mouse species could invariably lead to increased neural plasticity.

  16. Experimental demonstration of PT-symmetric stripe lasers

    CERN Document Server

    Gu, Zhiyuan; Lyu, Quan; Li, Meng; Xiao, Shumin; Song, Qinghai

    2015-01-01

    Recently, the coexistence of parity-time (PT) symmetric laser and absorber has gained tremendous research attention. While the PT symmetric absorber has been observed in microwave metamaterials, the experimental demonstration of PT symmetric laser is still absent. Here we experimentally study PT-symmetric laser absorber in stripe waveguide. Using the concept of PT symmetry to exploit the light amplification and absorption, PT-symmetric laser absorbers have been successfully obtained. Different from the single-mode PT symmetric lasers, the PT-symmetric stripe lasers have been experimentally confirmed by comparing the relative wavelength positions and mode spacing under different pumping conditions. When the waveguide is half pumped, the mode spacing is doubled and the lasing wavelengths shift to the center of every two initial lasing modes. All these observations are consistent with the theoretical predictions and confirm the PT-symmetry breaking well.

  17. Very high coercivity magnetic stripes produced by particle rotation

    Energy Technology Data Exchange (ETDEWEB)

    Naylor, R.B.

    1992-12-01

    This paper describes a current research program at Sandia National Laboratories whereby magnetic stripes are produced through the use of a new particle rotation technology. This new process allows the stripes to be produced in bulk and then held in a latent state so that they may be encoded at a later date. Since particle rotation is less dependent on the type of magnetic particle used, very high coercivity particles could provide a way to increase both magnetic tamper-resistance and accidental erasure protection. This research was initially funded by the Department of Energy, Office of Safeguard and Security as a portion of their Science and Technology Base Development, Advanced Security Concepts program. Current program funding is being provided by Sandia National Laboratories as part of their Laboratory Directed Research and Development program.

  18. Numerical study of domain coarsening in anisotropic stripe patterns.

    Science.gov (United States)

    Boyer, Denis

    2004-06-01

    We study the coarsening of two-dimensional smectic polycrystals characterized by grains of oblique stripes with only two possible orientations. For this purpose, an anisotropic Swift-Hohenberg equation is solved. For quenches close enough to the onset of stripe formation, the average domain size increases with time as t(1/2). Further from onset, anisotropic pinning forces similar to Peierls stresses in solid crystals slow down defects, and growth becomes anisotropic. In a wide range of quench depths, dislocation arrays remain mobile and dislocation density roughly decays as t(-1/3), while chevron boundaries are totally pinned. We discuss some agreements and disagreements found with recent experimental results on the coarsening of anisotropic electroconvection patterns.

  19. Striping and Scheduling for Large Scale Multimedia Servers

    Institute of Scientific and Technical Information of China (English)

    Kyung-Oh Lee; Jun-Ho Park; Yoon-Young Park

    2004-01-01

    When designing a multimedia server, several things must be decided: which scheduling scheme to adopt, how to allocate multimedia objects on storage devices, and the round length with which the streams will be serviced. Several problems in the designing of large-scale multimedia servers are addressed, with the following contributions: (1) a striping scheme is proposed that minimizes the number of seeks and hence maximizes the performance; (2) a simple and efficient mechanism is presented to find the optimal striping unit size as well as the optimal round length, which exploits both the characteristics of VBR streams and the situation of resources in the system; and (3) the characteristics and resource requirements of several scheduling schemes are investigated in order to obtain a clear indication as to which scheme shows the best performance in realtime multimedia servicing. Based on our analysis and experimental results, the CSCAN scheme outperforms the other schemes.

  20. Genetic Analysis of Major and Minor Gene(s) Resistant to Stripe Rust in Important Resource Wheat Line Jinghe891-1

    Institute of Scientific and Technical Information of China (English)

    XU Shi-chang; ZHANG Jing-yuan; ZHAO Wen-sheng; WU Li-ren; ZHANG Ji-xin; YUAN Zhen-dong

    2002-01-01

    Inheritance of line Jinghe891-1 resistant to pathotype of Puccinia striiformis in two patterns of temperature (Normal: day 18℃/night 10℃, High: day 24℃/night 15℃ )was studied in this paper. The results showed that there were at least two pairs of dominant major genes and one pair of recessive minor genes in Jinghe 891-1. The two pairs of major genes that conferred resistance to CY31 were allelic or linked closely with resistance gene in Jubilejna Ⅱ , Kangyin655 and T. spelta Album. They were novel resistance genes and were inherited in a repeated or independent mode. The minor genes, which could modify the major genes,were sensitive to temperature and conferred resistance to all pathotypes of Puccinia striiformis in China. It is recommended that this line can be used as an important resource stock.

  1. Charge stripes and spin correlations in copper-oxide superconductors

    Science.gov (United States)

    Tranquada, J. M.

    1997-08-01

    Recent neutron diffraction studies have yielded evidence that, in a particular cuprate family, holes doped into the CuO 2 planes segregate into stripes that separate antiferromagnetic domains. Here it is shown that such a picture provides a quantitatively consistent interpretation of the spin fluctuations measured by neutron diffraction in La 1.85Sr 0.15CuO 4 and YBa 2Cu 3O 6+ x.

  2. Charge stripes and spin correlations in copper-oxide superconductors

    OpenAIRE

    Tranquada, J. M.

    1997-01-01

    Recent neutron diffraction studies have yielded evidence that, in a particular cuprate family, holes doped into the CuO(2) planes segregate into stripes that separate antiferromagnetic domains. Here it is shown that such a picture provides a quantitatively consistent interpretation of the spin fluctuations measured by neutron scattering in La(1.85)Sr(0.15)CuO(4) and YBa(2)Cu(3)O(6+x).

  3. Strong-coupling and the Stripe phase of $^3$He

    OpenAIRE

    Wiman, Joshua J.; Sauls, J. A.

    2016-01-01

    Thin films of superfluid $^3$He were predicted, based on weak-coupling BCS theory, to have a stable phase which spontaneously breaks translational symmetry in the plane of the film. This crystalline superfluid, or "stripe" phase, develops as a one dimensional periodic array of domain walls separating degenerate B phase domains. We report calculations of the phases and phase diagram for superfluid $^3$He in thin films using a strong-coupling Ginzburg-Landau theory that accurately reproduces th...

  4. NATURAL TRANSVERSE VIBRATIONS OF A PRESTRESSED ORTHOTROPIC PLATE-STRIPE

    Directory of Open Access Journals (Sweden)

    Egorychev Oleg Aleksandrovich

    2012-10-01

    Full Text Available The article represents a new outlook at the boundary-value problem of natural vibrations of a homogeneous pre-stressed orthotropic plate-stripe. In the paper, the motion equation represents a new approximate hyperbolic equation (rather than a parabolic equation used in the majority of papers covering the same problem describing the vibration of a homogeneous orthotropic plate-stripe. The proposed research is based on newly derived boundary conditions describing the pin-edge, rigid, and elastic (vertical types of fixing, as well as the boundary conditions applicable to the unfixed edge of the plate. The paper contemplates the application of the Laplace transformation and a non-standard representation of a homogeneous differential equation with fixed factors. The article proposes a detailed representation of the problem of natural vibrations of a homogeneous orthotropic plate-stripe if rigidly fixed at opposite sides; besides, the article also provides frequency equations (no conclusions describing the plate characterized by the following boundary conditions: rigid fixing at one side and pin-edge fixing at the opposite side; pin-edge fixing at one side and free (unfixed other side; rigid fixing at one side and elastic fixing at the other side. The results described in the article may be helpful if applied in the construction sector whenever flat structural elements are considered. Moreover, specialists in solid mechanics and theory of elasticity may benefit from the ideas proposed in the article.

  5. Gaze Stripes: Image-Based Visualization of Eye Tracking Data.

    Science.gov (United States)

    Kurzhals, Kuno; Hlawatsch, Marcel; Heimerl, Florian; Burch, Michael; Ertl, Thomas; Weiskopf, Daniel

    2016-01-01

    We present a new visualization approach for displaying eye tracking data from multiple participants. We aim to show the spatio-temporal data of the gaze points in the context of the underlying image or video stimulus without occlusion. Our technique, denoted as gaze stripes, does not require the explicit definition of areas of interest but directly uses the image data around the gaze points, similar to thumbnails for images. A gaze stripe consists of a sequence of such gaze point images, oriented along a horizontal timeline. By displaying multiple aligned gaze stripes, it is possible to analyze and compare the viewing behavior of the participants over time. Since the analysis is carried out directly on the image data, expensive post-processing or manual annotation are not required. Therefore, not only patterns and outliers in the participants' scanpaths can be detected, but the context of the stimulus is available as well. Furthermore, our approach is especially well suited for dynamic stimuli due to the non-aggregated temporal mapping. Complementary views, i.e., markers, notes, screenshots, histograms, and results from automatic clustering, can be added to the visualization to display analysis results. We illustrate the usefulness of our technique on static and dynamic stimuli. Furthermore, we discuss the limitations and scalability of our approach in comparison to established visualization techniques.

  6. First report of Juneberry rust caused by Gymnosporangium nelsonii on Juneberry in Michigan

    Science.gov (United States)

    Amelanchier alnifolia, commonly known as juneberry or Saskatoon serviceberry, was historically a prairie fruit native to the Northern Great Plains, southern Yukon and Northwest Territories. While juneberry is an important fruit crop in the prairie provinces of Canada, small commercial plantings also...

  7. First report of rust caused by Puccinia carduorum on Italian thistle in Tunisia

    Science.gov (United States)

    Italian thistle (Carduus pycnocephalus L.), family Asteraceae, is a common weed in rangelands, pasturelands, and cereal crops in Tunisia where it is rapidly spreading and becoming agriculturally important due to its competitive ability. It is also a problematic invasive weed in the western United S...

  8. Using Landscape Genetics Simulations for Planting Blister Rust Resistant Whitebark Pine in the US Northern Rocky Mountains

    Science.gov (United States)

    Landguth, Erin L.; Holden, Zachary A.; Mahalovich, Mary F.; Cushman, Samuel A.

    2017-01-01

    Recent population declines to the high elevation western North America foundation species whitebark pine, have been driven by the synergistic effects of the invasive blister rust pathogen, mountain pine beetle (MPB), fire exclusion, and climate change. This has led to consideration for listing whitebark pine (WBP) as a threatened or endangered species under the Endangered Species Act, which has intensified interest in developing management strategies for maintaining and restoring the species. An important, but poorly studied, aspect of WBP restoration is the spatial variation in adaptive genetic variation and the potential of blister rust resistant strains to maintain viable populations in the future. Here, we present a simulation modeling framework to improve understanding of the long-term genetic consequences of the blister rust pathogen, the evolution of rust resistance, and scenarios of planting rust resistant genotypes of whitebark pine. We combine climate niche modeling and eco-evolutionary landscape genetics modeling to evaluate the effects of different scenarios of planting rust-resistant genotypes and impacts of wind field direction on patterns of gene flow. Planting scenarios showed different levels for local extirpation of WBP and increased population-wide blister rust resistance, suggesting that the spatial arrangement and choice of planting locations can greatly affect survival rates of whitebark pine. This study presents a preliminary, but potentially important, framework for facilitating the conservation of whitebark pine. PMID:28239390

  9. Using Landscape Genetics Simulations for Planting Blister Rust Resistant Whitebark Pine in the US Northern Rocky Mountains.

    Science.gov (United States)

    Landguth, Erin L; Holden, Zachary A; Mahalovich, Mary F; Cushman, Samuel A

    2017-01-01

    Recent population declines to the high elevation western North America foundation species whitebark pine, have been driven by the synergistic effects of the invasive blister rust pathogen, mountain pine beetle (MPB), fire exclusion, and climate change. This has led to consideration for listing whitebark pine (WBP) as a threatened or endangered species under the Endangered Species Act, which has intensified interest in developing management strategies for maintaining and restoring the species. An important, but poorly studied, aspect of WBP restoration is the spatial variation in adaptive genetic variation and the potential of blister rust resistant strains to maintain viable populations in the future. Here, we present a simulation modeling framework to improve understanding of the long-term genetic consequences of the blister rust pathogen, the evolution of rust resistance, and scenarios of planting rust resistant genotypes of whitebark pine. We combine climate niche modeling and eco-evolutionary landscape genetics modeling to evaluate the effects of different scenarios of planting rust-resistant genotypes and impacts of wind field direction on patterns of gene flow. Planting scenarios showed different levels for local extirpation of WBP and increased population-wide blister rust resistance, suggesting that the spatial arrangement and choice of planting locations can greatly affect survival rates of whitebark pine. This study presents a preliminary, but potentially important, framework for facilitating the conservation of whitebark pine.

  10. Clustering analysis of high-redshift Luminous Red Galaxies in Stripe 82

    CERN Document Server

    Nikoloudakis, Nikolaos; Sawangwit, Utane

    2012-01-01

    We present a clustering analysis of Luminous Red Galaxies (LRGs) in SDSS Stripe 82. We study the angular 2-point correlation function, w(theta), of 130,000 LRG candidates via colour-cut selections in izK with the K band coverage coming from UKIDSS LAS. We have used the cross-correlation technique of Newman (2008) to establish the LRG redshift distribution. Cross-correlating with SDSS QSOs, MegaZ-LRGs and DEEP2 galaxies implies an average LRG redshift of z~1 with space density, n_g~3.2x10^-4 h^3 Mpc^-3. For theta 50 h^-1 Mpc. If this result is not caused by systematics, then it may provide evidence for primordial non-Gaussianity in the matter distribution, with f^local_NL=90+/-30.

  11. First identification of Flavobacterium columnare infection in farmed freshwater striped catfish Pangasianodon hypophthalmus.

    Science.gov (United States)

    Tien, Nguyen Thi; Dung, Tu Thanh; Tuan, Nguyen Anh; Crumlish, Mags

    2012-08-13

    The bacterium Flavobacterium columnare was recovered and identified as the aetiological agent causing freshwater columnaris infection in farmed striped catfish Pangasianodon hypophthalmus (Sauvage) fingerlings that had suffered high mortality rates within commercial hatchery ponds in Vietnam. The gross clinical signs were typical of columnaris-infected fish. Histological examination found numerous Gram-negative, filamentous bacteria present on the skin, muscle and gill tissues of affected fish. The yellow-pigmented bacteria were isolated and identified as F. columnare using primary, biochemical and PCR methods. An experimental immersion-challenge study with 2 strains was also performed. It fulfilled Koch's postulates and showed a median lethal concentration (LC50) of 4.27 × 105 and 1.66 × 106 cfu ml-1 for the F. columnare strains FC-HN and FC-CT, respectively. To the best of our knowledge this is the first report of freshwater columnaris infection in P. hypophthalmus.

  12. Cu NQR study of the stripe phase local structure in the lanthanum cuprates

    Science.gov (United States)

    Teitel'baum; Buchner; de Gronckel H

    2000-03-27

    Using Cu nuclear quadrupole resonance (NQR) in Eu-doped La2-xSrxCuO4 we find the evidence of the pinned stripe phase at 1.3 K for 0. 08NQR line shape reveals three inequivalent Cu positions: (i) sites in the charged stripe, (ii) nonmagnetic sites outside the stripes, and (iii) sites with a magnetic moment of 0.29&mgr;(B) in the antiferromagnetically correlated regions. A dramatic change of the NQR signal for x>0.18 correlating with the onset of bulk superconductivity corresponds to the depinning of the stripe phase.

  13. Magnetotransport properties of Fe0.8Ga0.2 films with stripe domains

    Science.gov (United States)

    Granada, M.; Bustingorry, S.; Pontello, D. E.; Barturen, M.; Eddrief, M.; Marangolo, M.; Milano, J.

    2016-11-01

    Magnetotransport properties of Fe0.8Ga0.2 films with stripe domains are studied. The anisotropic magnetoresistance dominates the low field behavior, which is extremely dependent on the magnetic domains configuration. The magnetoresistance measured at different temperatures displays qualitatively different behaviors depending on the measurement configuration. When the stripes are oriented along the electric current, the low-field magnetoresistance changes sign with temperature, while when the stripes are perpendicular to the electric current the magnetoresistance curves are nearly temperature independent. A simple model considering parallel (series) conduction along (across) the stripes, plus the temperature dependence of anisotropic magnetoresistance and domains configuration, accounts for these experimental results.

  14. Microwave permeability of stripe patterned FeCoN thin film

    Science.gov (United States)

    Wu, Yuping; Yang, Yong; Ma, Fusheng; Zong, Baoyu; Yang, Zhihong; Ding, Jun

    2017-03-01

    Magnetic stripe patterns are of great importance for microwave applications owing to their highly tunable microwave permeability by adjusting the geometrical dimensions. In this work, stripe patterned FeCoN films with 160 nm thickness are fabricated by using standard UV photolithography. Their microwave permeability are investigated systematically via both experiment and micromagnetic simulation. The good agreement between experimental and simulation results suggests that stripe width is crucial for the microwave magnetic properties of the stripe pattern. It is demonstrated by simulation that with increasing stripe width from 1 to 80 μm the initial permeability shows a continuous growth from about 8-322, whiles the resonance frequency drops dramatically from 18.7 to 3.1 GHz at 4 μm gap size. Smaller gap size would result in slightly increased initial permeability due to larger magnetic volume ratio, accompanied by decreased resonance frequency because of stronger magnetostatic interaction. Moreover, the experimental investigation on stripe length effect indicates that the stripe length should be kept as long as possible to achieve uniform bulk resonance mode and high permeability value. Insufficient stripe length would result in low frequency edge mode and decayed bulk mode. This study could provide valuable guidelines on the selection of proper geometry dimensions of FeCoN stripe patterns for high frequency applications.

  15. Interrelations between citrus rust mite, Hirsutella thompsonii and greasy spot on citrus in Surinam

    NARCIS (Netherlands)

    Brussel, van E.W.

    1975-01-01

    Counts of citrus rust mite (Phyllocoptruta oleivora (Ashm.)) on leaves and fruit of citrus rose to a peak in the two dry seasons, the build up taking 4-5 weeks. It then decreased partly through infection by the entomogenous fungus Hirsutellathompsonii Fisher and partly through a decline in feed qual

  16. Molecular mapping of leaf rust resistance genes in the wheat line Yu 356-9

    Institute of Scientific and Technical Information of China (English)

    HAN Liu-sha; LI Zai-feng; WANG Jia-zhen; SHI Ling-zhi; ZHU Lin; LI Xing; LIU Da-qun; Syed J A Shah

    2015-01-01

    The Chinese wheat line Yu 356-9 exhibits a high level of resistance to leaf rust. In order to decipher the genetic base of resistance in Yu 356-9, gene postulation, inheritance analyses, and chromosome linkage mapping were carried out. Gene postulation completed using 15 leaf rust pathotypes and 36 isogenic lines indicated that Yu 356-9 was resistant to al pathotypes tested. F1 and F2 plants from the cross Yu 356-9 (resistant)/Zhengzhou 5389 (susceptible) were tested with leaf rust pathotype“FHNQ”in the greenhouse. Results indicated a 3:1 segregation ratio, indicative of the presence of a single dominant leaf rust resistance gene in Yu 356-9 which was temporarily designated as LrYu. Bulk segregant analysis and molecular marker assays were used to map LrYu. Five simple sequence repeat (SSR) markers on chromosome 2BS were found closely linked to LrYu. Among these markers, Xwmc770 is the most closely linked, with a genetic distance of 5.7 cM.

  17. The formation of green rust induced by tropical river biofilm components

    Energy Technology Data Exchange (ETDEWEB)

    Jorand, F., E-mail: jorand@pharma.uhp-nancy.fr [Laboratoire de Chimie Physique et Microbiologie pour l' Environnement (LCPME) UMR 7564, CNRS-Nancy-Universite, Institut Jean Barriol, 405 rue de Vandoeuvre, F-54600 Villers-les Nancy (France); Zegeye, A. [Laboratoire de Chimie Physique et Microbiologie pour l' Environnement (LCPME) UMR 7564, CNRS-Nancy-Universite, Institut Jean Barriol, 405 rue de Vandoeuvre, F-54600 Villers-les Nancy (France); Ghanbaja, J. [Service Commun de Microscopies Electroniques et Microanalyses X (SCMEM), Nancy-Universite, Bvd des Aiguillettes, BP 239, 54506, Vandoeuvre-les-Nancy (France); Abdelmoula, M. [Laboratoire de Chimie Physique et Microbiologie pour l' Environnement (LCPME) UMR 7564, CNRS-Nancy-Universite, Institut Jean Barriol, 405 rue de Vandoeuvre, F-54600 Villers-les Nancy (France)

    2011-06-01

    In the Sinnamary Estuary (French Guiana), a dense red biofilm grows on flooded surfaces. In order to characterize the iron oxides in this biofilm and to establish the nature of secondary minerals formed after anaerobic incubation, we conducted solid analysis and performed batch incubations. Elemental analysis indicated a major amount of iron as inorganic compartment along with organic matter. Solid analysis showed the presence of two ferric oxides ferrihydrite and lepidocrocite. Bacteria were abundant and represented more than 10{sup 11} cells g{sup -1} of dry weight among which iron reducers were revealed. Optical and electronic microscopy analysis revealed than the bacteria were in close vicinity of the iron oxides. After anaerobic incubations with exogenous electron donors, the biofilm's ferric material was reduced into green rust, a Fe{sup II}-Fe{sup III} layered double hydroxide. This green rust remained stable for several years. From this study and previous reports, we suggest that ferruginous biofilms should be considered as a favorable location for GR biomineralization when redox conditions and electron donors availability are gathered. - Research highlights: {yields} Characterization of ferruginous biofilm components by solid analysis methods. {yields} Lepidocrocite and ferrihydrite were the main iron oxides. {yields} Anaerobic incubation of biofilm with electron donors produced green rust. {yields} Biofilm components promote the formation of the green rust. {yields} Ferruginous biofilm could contribute to the natural mercury attenuation.

  18. Host range of Phakopsora pachyrhizi, the causal agent of soybean rust

    Science.gov (United States)

    Phakopsora pachyrhizi, the causal organism of soybean rust, was first described in 1903 from leaves of Glycine max subsp. soja, or wild soybean, in Japan. Since that time, there have been numerous reports of the pathogen on various leguminous species around the world, first in Asia, followed by Aust...

  19. Determination of Rate of Degradation of Iron Plates Due To Rust Using Image Processing -A Review

    Directory of Open Access Journals (Sweden)

    Priyanka Choudhary

    2014-03-01

    Full Text Available Abstract: most of industries and bridges around us make use of iron for manufacturing their products. On the other hand corrosion is a natural process that deteriorates the integrity of iron surface. Therefore, rusting of iron takes place. To avoid unwanted accidents in industries and bridges, it is necessary to detect rusting in earlier stage, so that it can be prevented. Digital image processing for the detection of the rusting provides fast, accurate and objectives results. In this research paper, we have done a systematic review of algorithms that help us to detect the rust area from a metal (iron.it has been found that most of researches are bring their images, processing series in usage for this purpose due to its simplicity in implementing and due to fact the images help capturing the visual inspection process easily and due to the ground teeth. The image processing techniques explored by other peoples based on in-depth analysis, we have also proposed a novel technique to overcome the limitation.

  20. Determination of Rate of Degradation of Iron Plates due to Rust using Image Processing

    Directory of Open Access Journals (Sweden)

    Priyanka Choudhary

    2015-02-01

    Full Text Available Most of industries and bridges around us make use of iron for manufacturing their products. On the other hand corrosion is a natural process that deteriorates the integrity of iron surface. Therefore, rusting of iron takes place. To avoid unwanted accidents in industries and bridges, it is necessary to detect rusting in earlier stage, so that it can be prevented. Digital image processing for the detection of the rusting provides fast, accurate and objectives results. In this research paper, we have done a systematic review of algorithms that help us to detect the rust area from a metal (iron.it has been found that most of researches are bring their images, processing series in usage for this purpose due to its simplicity in implementing and due to fact the images help capturing the visual inspection process easily and due to the ground teeth. The image processing techniques explored by other peoples based on in-depth analysis, we have also proposed a novel technique to overcome the limitation.

  1. High diversity of genes for nonhost resistance of barley to heterologous rust fungi

    NARCIS (Netherlands)

    Jafary, H.; Albertazzi, G.; Marcel, T.C.; Niks, R.E.

    2008-01-01

    Inheritance studies on the nonhost resistance of plants would normally require interspecific crosses that suffer from sterility and abnormal segregation. Therefore, we developed the barley¿Puccinia rust model system to study, using forward genetics, the specificity, number, and diversity of genes in

  2. Association analysis identifies Melampsora ×columbiana poplar leaf rust resistance SNPs.

    Directory of Open Access Journals (Sweden)

    Jonathan La Mantia

    Full Text Available Populus species are currently being domesticated through intensive time- and resource-dependent programs for utilization in phytoremediation, wood and paper products, and conversion to biofuels. Poplar leaf rust disease can greatly reduce wood volume. Genetic resistance is effective in reducing economic losses but major resistance loci have been race-specific and can be readily defeated by the pathogen. Developing durable disease resistance requires the identification of non-race-specific loci. In the presented study, area under the disease progress curve was calculated from natural infection of Melampsora ×columbiana in three consecutive years. Association analysis was performed using 412 P. trichocarpa clones genotyped with 29,355 SNPs covering 3,543 genes. We found 40 SNPs within 26 unique genes significantly associated (permutated P<0.05 with poplar rust severity. Moreover, two SNPs were repeated in all three years suggesting non-race-specificity and three additional SNPs were differentially expressed in other poplar rust interactions. These five SNPs were found in genes that have orthologs in Arabidopsis with functionality in pathogen induced transcriptome reprogramming, Ca²⁺/calmodulin and salicylic acid signaling, and tolerance to reactive oxygen species. The additive effect of non-R gene functional variants may constitute high levels of durable poplar leaf rust resistance. Therefore, these findings are of significance for speeding the genetic improvement of this long-lived, economically important organism.

  3. Introgression of a New Stem Rust Resistance Gene from Aegilops markgrafii into Wheat

    Science.gov (United States)

    In a prior study, we reported that an Alcedo/Aegilops markgrafii disomic addition line, AIII(D) (2n=44), was resistant to three races of the Ug99 lineage and five North American races of stem rust pathogen in wheat and the resistance originated from the alien chromosome. In this study, our objectiv...

  4. Glycine buffered synthesis of layered iron(II)-iron(III) hydroxides (green rusts)

    DEFF Research Database (Denmark)

    Yin, Weizhao; Huang, Lizhi; Pedersen, Emil Bjerglund;

    2016-01-01

    Layered Fe(II)-Fe(III) hydroxides (green rusts, GRs) are efficient reducing agents against oxidizing contaminants such as chromate, nitrate, selenite, and nitroaromatic compounds and chlorinated solvents. In this study, we adopted a buffered precipitation approach where glycine (GLY) was used in ...

  5. Genome-wide association study for crown rust (Puccinia coronata f. sp. avenae) and powdery mildew (Blumeria graminis f. sp. avenae) resistance in an oat (Avena sativa) collection of commercial varieties and landraces.

    Science.gov (United States)

    Montilla-Bascón, Gracia; Rispail, Nicolas; Sánchez-Martín, Javier; Rubiales, Diego; Mur, Luis A J; Langdon, Tim; Howarth, Catherine J; Prats, Elena

    2015-01-01

    Diseases caused by crown rust (Puccinia coronata f. sp. avenae) and powdery mildew (Blumeria graminis f. sp. avenae) are among the most important constraints for the oat crop. Breeding for resistance is one of the most effective, economical, and environmentally friendly means to control these diseases. The purpose of this work was to identify elite alleles for rust and powdery mildew resistance in oat by association mapping to aid selection of resistant plants. To this aim, 177 oat accessions including white and red oat cultivars and landraces were evaluated for disease resistance and further genotyped with 31 simple sequence repeat and 15,000 Diversity Arrays Technology (DArT) markers to reveal association with disease resistance traits. After data curation, 1712 polymorphic markers were considered for association analysis. Principal component analysis and a Bayesian clustering approach were applied to infer population structure. Five different general and mixed linear models accounting for population structure and/or kinship corrections and two different statistical tests were carried out to reduce false positive. Five markers, two of them highly significant in all models tested were associated with rust resistance. No strong association between any marker and powdery mildew resistance at the seedling stage was identified. However, one DArT sequence, oPt-5014, was strongly associated with powdery mildew resistance in adult plants. Overall, the markers showing the strongest association in this study provide ideal candidates for further studies and future inclusion in strategies of marker-assisted selection.

  6. Mapping-by-sequencing in complex polyploid genomes using genic sequence capture: a case study to map yellow rust resistance in hexaploid wheat.

    Science.gov (United States)

    Gardiner, Laura-Jayne; Bansept-Basler, Pauline; Olohan, Lisa; Joynson, Ryan; Brenchley, Rachel; Hall, Neil; O'Sullivan, Donal M; Hall, Anthony

    2016-08-01

    Previously we extended the utility of mapping-by-sequencing by combining it with sequence capture and mapping sequence data to pseudo-chromosomes that were organized using wheat-Brachypodium synteny. This, with a bespoke haplotyping algorithm, enabled us to map the flowering time locus in the diploid wheat Triticum monococcum L. identifying a set of deleted genes (Gardiner et al., 2014). Here, we develop this combination of gene enrichment and sliding window mapping-by-synteny analysis to map the Yr6 locus for yellow stripe rust resistance in hexaploid wheat. A 110 MB NimbleGen capture probe set was used to enrich and sequence a doubled haploid mapping population of hexaploid wheat derived from an Avalon and Cadenza cross. The Yr6 locus was identified by mapping to the POPSEQ chromosomal pseudomolecules using a bespoke pipeline and algorithm (Chapman et al., 2015). Furthermore the same locus was identified using newly developed pseudo-chromosome sequences as a mapping reference that are based on the genic sequence used for sequence enrichment. The pseudo-chromosomes allow us to demonstrate the application of mapping-by-sequencing to even poorly defined polyploidy genomes where chromosomes are incomplete and sub-genome assemblies are collapsed. This analysis uniquely enabled us to: compare wheat genome annotations; identify the Yr6 locus - defining a smaller genic region than was previously possible; associate the interval with one wheat sub-genome and increase the density of SNP markers associated. Finally, we built the pipeline in iPlant, making it a user-friendly community resource for phenotype mapping.

  7. Stem Rust Resistance in a Geographically Diverse Collection of Spring Wheat Lines Collected from Across Africa

    Science.gov (United States)

    Prins, Renée; Dreisigacker, Susanne; Pretorius, Zakkie; van Schalkwyk, Hester; Wessels, Elsabet; Smit, Corneli; Bender, Cornel; Singh, Davinder; Boyd, Lesley A.

    2016-01-01

    Following the emergence of the Ug99 lineage of Puccinia graminis f. sp. tritici (Pgt) a collective international effort has been undertaken to identify new sources of wheat stem rust resistance effective against these races. Analyses were undertaken in a collection of wheat genotypes gathered from across Africa to identify stem rust resistance effective against the Pgt races found in Eastern and Southern Africa. The African wheat collection consisted of historic genotypes collected in Kenya, South Africa, Ethiopia, Sudan, Zambia, Morocco, and Tunisia, and current South African breeding lines. Both Bayesian cluster and principal coordinate analyses placed the wheat lines from Sudan in a distinct group, but indicated a degree of genetic relatedness among the other wheat lines despite originating from countries across Africa. Seedling screens with Pgt race PTKST, pedigree information and marker haplotype analysis confirmed the presence of Sr2, Sr36, Sr24, Sr31, and Lr34/Yr18/Sr57 in a number of the lines. A genome-wide association study (GWAS) undertaken with Diversiry Arrays Technology (DArT) and stem rust (Sr) gene associated markers and Stem Area Infected (SAI) and Reaction Type (RT) field phenotypes, collected from trials carried out across two seasons in Kenya in 2009 and in South Africa in 2011, identified 29 marker-trait associations (MTA). Three MTA were in common between SAI and RT, with the biggest effect MTA being found on chromosome 6AS. Two wheat lines, W1406 and W6979 that exhibited high levels of adult plant stem rust resistance were selected to generate bi-parental mapping populations. Only the MTA on chromosomes 6AS and 3BS, and the locus Lr34/Yr18/Sr57 were confirmed following QTL mapping. Additional stem rust resistance QTL, not detected by the GWAS, were found on chromosomes 2BS, 2DL, 3DL, and 4D. PMID:27462322

  8. Stem rust (Puccinia graminis ssp. graminicola Urban its hosts and harmfulness in grasses grown for seed

    Directory of Open Access Journals (Sweden)

    Maria Prończuk

    2013-12-01

    Full Text Available Stem rust development on four species of grasses was studied in field experiments conducted at Radzików in 1997-2001. Population of Puccinia graminis ssp. graminicola from different hosts was characterised and their harmfulness for grass grown for seed was estimated. The materials for study were ecotypes and strains of Lolium perenne, Festuca rubra, Poa pratensis and Deschampsia caespitosa collected in breeding nursery and cultivars and strains of L.perenne, F.rubra, P.pratensis cultivated for seed. It was found that the changes in environmental conditions during last years influenced earlier occurrence of stem rust on grasses in Poland. All examined species were the host of P.graminis ssp. graminicola, however the period of infection of particular hosts were different. L.perenne and D.caespitosa were infected in early summer but F.rubra and P.pratensis in late summer or in the autumn. Morphological analysis of spores of P.graminis ssp. graminicola have shoved significant differences between populations obtained from L.perenne and D.caespitosa. Some differences were found between populations from F.rubra and P.pratensis also, but they need more study. Every year occurrence of stem rust on L.perenne and D.caespitosa and its relation with spring temperature in Radzików indicated that populations of patogen could overwinter in local turf. Incidental appearance of stem rust on F.rubra and P.pratensis in centre of Poland allowed to suppose that spores of these forms might be transfer by wind from other regions. The investigation revealed that stem rust can be dangerous for L.perenne grown for seed when infection occurs at flowering time. It has been established that infection of F.rubra and P.pratensis in autumn should not be disregarded. Damages of leaves by P.graminis ssp. graminicola substantially limited plant heading in the next year.

  9. Pushing the boundaries of resistance: insights from Brachypodium-rust interactions

    Directory of Open Access Journals (Sweden)

    Melania eFigueroa

    2015-07-01

    Full Text Available The implications of global population growth urge transformation of current food and bioenergy production systems to sustainability. Members of the family Poaceae are of particular importance both in food security and for their applications as biofuel substrates. For centuries, rust fungi have threatened the production of valuable crops such as wheat, barley, oat and other small grains; similarly, biofuel crops can also be susceptible to these pathogens. Emerging rust pathogenic races with increased virulence and recurrent rust epidemics around the world point out the vulnerability of monocultures. Basic research in plant immunity, especially in model plants, can make contributions to understanding plant resistance mechanisms and improve disease management strategies. The development of the grass Brachypodium distachyon as a genetically tractable model for monocots, especially temperate cereals and grasses, offers the possibility to overcome the experimental challenges presented by the genetic and genomic complexities of economically valuable crop plants. The numerous resources and tools available in Brachypodium have opened new doors to investigate the underlying molecular and genetic bases of plant-microbe interactions in grasses and evidence demonstrating the applicability and advantages of working with B. distachyon is increasing. Importantly, several interactions between B. distachyon and devastating plant pathogens, such rust fungi, have been examined in the context of non-host resistance. Here, we discuss the use of B. distachyon in these various pathosystems. Exploiting B. distachyon to understand the mechanisms underpinning disease resistance to non-adapted rust fungi may provide effective and durable approaches to fend off these pathogens. The close phylogenetic relationship among Brachypodium spp. and grasses with industrial and agronomic value support harnessing this model plant to improve cropping systems and encourage its use in

  10. Economic analysis of the proposed rule to prevent arrival of new genetic strains of the rust fungus Puccinia psidii in Hawai?i.

    Science.gov (United States)

    Burnett, Kimberly; D'Evelyn, Sean; Loope, Lloyd; Wada, Christopher A.

    2012-01-01

    Since its first documented introduction to Hawai‘i in 2005, the rust fungus P. psidii has already severely damaged Syzygium jambos (Indian rose apple) trees and the federally endangered Eugenia koolauensis (nioi). Fortunately, the particular strain has yet to cause serious damage to ‘ōhi‘a, which comprises roughly 80% of the state’s native forests and covers 400,000 ha. Although the rust has affected less than 5% of Hawaii’s ‘ōhi‘a trees thus far, the introduction of more virulent strains and the genetic evolution of the current strain are still possible. Since the primary pathway of introduction is Myrtaceae plant material imported from outside the state, potential damage to ‘ohi‘a can be minimized by regulating those high-risk imports. We discuss the economic impact on the state’s florist, nursery, landscaping, and forest plantation industries of a proposed rule that would ban the import of non-seed Myrtaceae plant material and require a one-year quarantine of seeds. Our analysis suggests that the benefits to the forest plantation industry of a complete ban on non-seed material would likely outweigh the costs to other affected sectors, even without considering the reduction in risk to ‘ōhi‘a. Incorporating the value of ‘ōhi‘a protection would further increase the benefit-cost ratio in favor of an import ban.

  11. Stripe order in superconducting La2-xBaxCuO4 (0.095 < x < 0.155)

    Energy Technology Data Exchange (ETDEWEB)

    Hucker, Markus [Brookhaven National Lab. (BNL), Upton, NY (United States); v. Zimmermann, Martin [Hamburger Synchrotronstrahlungslabor, Hamburg (Germany); Gu, Genda D. [Brookhaven National Lab. (BNL), Upton, NY (United States); Xu, Z. J. [Brookhaven National Lab. (BNL), Upton, NY (United States); Wen, J. S. [Brookhaven National Lab. (BNL), Upton, NY (United States); Xu, Guangyong [Brookhaven National Lab. (BNL), Upton, NY (United States); Kang, H. J. [National Inst. of Standards and Technology, Gaithersburg, MD (United States); Zheludev, A. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Tranquada, John M. [Brookhaven National Lab. (BNL), Upton, NY (United States)

    2011-03-17

    The correlations between stripe order, superconductivity, and crystal structure in La2-x Bax CuO4 single crystals have been studied by means of x-ray and neutron diffraction as well as static magnetization measurements. The derived phase diagram shows that charge stripe order (CO) coexists with bulk superconductivity in a broad range of doping around x=1/8 , although the CO order parameter and correlation length fall off quickly for x≠1/8 . Except for x=0.155 , the onset of CO always coincides with the transition between the orthorhombic and the tetragonal or less orthorhombic low-temperature structures. The CO transition evolves from a sharp drop at low x to a more gradual transition at higher x , eventually falling below the structural phase boundary for optimum doping. With respect to the interlayer CO correlations, we find no qualitative change of the stripe stacking order as a function of doping, and in-plane and out-of-plane correlations disappear simultaneously at the transition. Similarly to the CO, the spin stripe order (SO) is also most pronounced at x=1/8 . Truly static SO sets in below the CO and coincides with the first appearance of in-plane superconducting correlations at temperatures significantly above the bulk transition to superconductivity (SC). Indications that bulk SC causes a reduction of the spin or charge stripe order could not be identified. We argue that CO is the dominant order that is compatible with SC pairing but competes with SC phase coherence. Comparing our results with data from the literature, we find good agreement if all results are plotted as a function of x' instead of the nominal x , where x' represents an estimate of the actual Ba content, extracted from the doping dependence of the structural transition between the orthorhombic phase and the tetragonal high-temperature phase.

  12. Stripe order in superconducting La2-xBaxCuO4 (0.095⩽x⩽0.155)

    Science.gov (United States)

    Hücker, M.; v. Zimmermann, M.; Gu, G. D.; Xu, Z. J.; Wen, J. S.; Xu, Guangyong; Kang, H. J.; Zheludev, A.; Tranquada, J. M.

    2011-03-01

    The correlations between stripe order, superconductivity, and crystal structure in La2-xBaxCuO4 single crystals have been studied by means of x-ray and neutron diffraction as well as static magnetization measurements. The derived phase diagram shows that charge stripe order (CO) coexists with bulk superconductivity in a broad range of doping around x=1/8, although the CO order parameter and correlation length fall off quickly for x≠1/8. Except for x=0.155, the onset of CO always coincides with the transition between the orthorhombic and the tetragonal or less orthorhombic low-temperature structures. The CO transition evolves from a sharp drop at low x to a more gradual transition at higher x, eventually falling below the structural phase boundary for optimum doping. With respect to the interlayer CO correlations, we find no qualitative change of the stripe stacking order as a function of doping, and in-plane and out-of-plane correlations disappear simultaneously at the transition. Similarly to the CO, the spin stripe order (SO) is also most pronounced at x=1/8. Truly static SO sets in below the CO and coincides with the first appearance of in-plane superconducting correlations at temperatures significantly above the bulk transition to superconductivity (SC). Indications that bulk SC causes a reduction of the spin or charge stripe order could not be identified. We argue that CO is the dominant order that is compatible with SC pairing but competes with SC phase coherence. Comparing our results with data from the literature, we find good agreement if all results are plotted as a function of x' instead of the nominal x, where x' represents an estimate of the actual Ba content, extracted from the doping dependence of the structural transition between the orthorhombic phase and the tetragonal high-temperature phase.

  13. 454-pyrosequencing of Coffea arabica leaves infected by the rust fungus Hemileia vastatrix reveals in planta-expressed pathogen-secreted proteins and plant functions in a late compatible plant-rust interaction.

    Science.gov (United States)

    Fernandez, Diana; Tisserant, Emilie; Talhinhas, Pedro; Azinheira, Helena; Vieira, Ana; Petitot, Anne-Sophie; Loureiro, Andreia; Poulain, Julie; Da Silva, Corinne; Silva, Maria Do Céu; Duplessis, Sébastien

    2012-01-01

    Coffee (Coffea arabica L.), one of the key export and cash crops in tropical and subtropical countries, suffers severe losses from the rust fungus Hemileia vastatrix. The transcriptome of H. vastatrix was analysed during a compatible interaction with coffee to obtain an exhaustive repertoire of the genes expressed during infection and to identify potential effector genes. Large-scale sequencing (454-GS-FLEX Titanium) of mixed coffee and rust cDNAs obtained from 21-day rust-infected leaves generated 352 146 sequences which assembled into 22 774 contigs. In the absence of any reference genomic sequences for Coffea or Hemileia, specific trinucleotide frequencies within expressed sequence tags (ESTs) and blast homology against a set of dicots and basidiomycete genomes were used to distinguish pathogen from plant sequences. About 30% (6763) of the contigs were assigned to H. vastatrix and 61% (13 951) to C. arabica. The majority (60%) of the rust sequences did not show homology to any genomic database, indicating that they were potential novel fungal genes. In silico analyses of the 6763 H. vastatrix contigs predicted 382 secreted proteins and identified homologues of the flax rust haustorially expressed secreted proteins (HESPs) and bean rust transferred protein 1 (RTP1). These rust candidate effectors showed conserved amino-acid domains and conserved patterns of cysteine positions suggestive of conserved functions during infection of host plants. Quantitative reverse transcription-polymerase chain reaction profiling of selected rust genes revealed dynamic expression patterns during the time course of infection of coffee leaves. This study provides the first valuable genomic resource for the agriculturally important plant pathogen H. vastatrix and the first comprehensive C. arabica EST dataset.

  14. Mycobacterial infections in striped bass from Delaware Bay

    Science.gov (United States)

    Ottinger, C.A.; Brown, J.J.; Densmore, Christine L.; Starliper, C.E.; Blazer, V.S.; Weyers, H.S.; Beauchamp, K.A.; Rhodes, M.W.; Kator, H.; Gauthier, David T.; Vogelbein, W.K.

    2007-01-01

    Eighty striped bass Morone saxatilis were obtained from Delaware Bay using commercial gill nets set adjacent to Woodland Beach (n = 70) and Bowers Beach (n = 10) in December 2003. Fish were examined for gross lesions. Total lengths (TLs) and eviscerated weights were determined to calculate condition factors (K). Portions of spleens were aseptically harvested for bacterial culture, and portions of spleens, kidneys (anterior and posterior), livers, and gonads were obtained for histological examination. The size distribution of the striped bass was relatively homogeneous; the mean TL was about 600 mm for all samples. Mean K exceeded 0.95 in all samples and was not significantly different (P > 0.05) among samples. Significant differences in mycobacterial infection prevalence (P ??? 0.05) were observed among samples; samples obtained at Woodland Beach (WB) on December 10 (53.8%, n = 13) and December 17 (7.1%, n = 42) exhibited the most striking differences in prevalence. Mycobacterial infection intensity ranged from 1 ?? 102 to 1 ?? 107 colony-forming units per gram of spleen. Acanthocephalan infection prevalence and intensity, non-acid-fast bacterial infection prevalence, and fish sex ratio were also significantly different among the samples (P ??? 0.05). Similar to the mycobacterial infections, differences in sex ratio, acanthocephalan infection, and non-acid-fast bacterial infection were observed between the WB samples taken on December 10 and 17. However, no significant associations (P > 0.05) were observed between sex ratio or these infections and mycobacterial infection. The differences in bacterial and parasite infection prevalence and intensity and fish sex ratio in some samples indicate that these fish had a different history and that the epizootiology of mycobacterial infection in striped bass from Delaware Bay may be relatively complex. ?? Copyright by the American Fisheries Society 2007.

  15. SM-1蜡膜防锈油的研制%Preparation of SM-1 Rust Prevention Oil

    Institute of Scientific and Technical Information of China (English)

    谭胜; 付洪瑞; 陈学军; 刘东志

    2000-01-01

    以JD脂及酸和合成十八胺的复合物为成膜材料,制备了一种蜡膜防锈油。结果表明,该油具有油膜薄、防锈性好和油基稳定等特点,可用于机床、金属零备件及军械装备的封存与防护。%The SM-1 rust prevention oil was prepared by using complex of fatty acid and stearyl amine as basic film forming material, and a certain amount of oil soluble inhibitor was added. It was shown that the SM-1 rust prevention oil had favourite features in stability and rust prevention. It could be appropriate for sealing and rust preventing of machine tool, metal parts and ordnances.

  16. Differences in rust in hearing aid batteries across four manufacturers, four battery sizes, and five durations of exposure.

    Science.gov (United States)

    Valente, Michael; Cadieux, Jamie H; Flowers, Laura; Newman, John G; Scherer, Juergen; Gephart, Greg

    2007-01-01

    Three hundred twenty zinc-air batteries representing four manufacturers (Energizer, Power One, Duracell, and Ray-O-Vac) and four cell sizes (10, 312, 13, and 675) were exposed in a salt spray fog apparatus for 2.5, 5.5, 24, 48, and 72 hours. At the conclusion of each exposure, the batteries were rated blindly for the presence of rust by four experienced audiologists using a four point rating scale. Results revealed significant differences in the rating of rust across the four manufacturers and duration of exposure. No statistically significant difference was found across cell size. Also, the correlation between raters was exceptionally high indicating that each audiologist rated the presence of rust for each battery in a very similar manner. Scanning electron microscopy (SEM), energy dispersive x-ray spectroscopy (EDS), and Auger electron spectroscopy (AES) techniques were applied and provided answers for the observed differences in rust between the four manufacturers.

  17. Charge Stripes and Antiferromagnetism in Insulating Nickelates and Superconducting Cuprates

    OpenAIRE

    Tranquada, J. M.

    1998-01-01

    Neutron and X-ray scattering studies have provided strong evidence for coupled spatial modulations of charge and spin densities in layered nickelates and cuprates. The accumulated results for La(2-x)Sr(x)NiO(4+d) are consistent with the strongly-modulated topological-stripe concept. Clues from Nd-doped La(2-x)Sr(x)CuO(4) suggest similar behavior for the cuprates. The experimental results are summarized, and features that conflict with an interpretation based on a Fermi-surface instability are...

  18. Charge stripes and antiferromagnetism in insulating nickelates and superconducting cuprates

    Science.gov (United States)

    Tranquada, J.

    1998-10-01

    Neutron and X-ray scattering studies have provided strong evidence for coupled spatial modulations of charge and spin densities in layered nickelates and cuprates. The accumulated results for La(2-x)Sr(x)NiO(4+d) are consistent with the strongly-modulated topological-stripe concept. Clues from Nd-doped La(2-x)Sr(x)CuO(4) suggest similar behavior for the cuprates. The experimental results are summarized, and features that conflict with an interpretation based on a Fermi-surface instability are emphasized. A rationalization for the differences in transport properties between the cuprates and nickelates is given.

  19. Unfolding of Vortices into Topological Stripes in a Multiferroic Material

    Science.gov (United States)

    Wang, X.; Mostovoy, M.; Han, M. G.; Horibe, Y.; Aoki, T.; Zhu, Y.; Cheong, S.-W.

    2014-06-01

    Multiferroic hexagonal RMnO3 (R =rare earths) crystals exhibit dense networks of vortex lines at which six domain walls merge. While the domain walls can be readily moved with an applied electric field, the vortex cores so far have been impossible to control. Our experiments demonstrate that shear strain induces a Magnus-type force pulling vortices and antivortices in opposite directions and unfolding them into a topological stripe domain state. We discuss the analogy between this effect and the current-driven dynamics of vortices in superconductors and superfluids.

  20. Response to "Critical Assessment of the Evidence for Striped Nanoparticles".

    Directory of Open Access Journals (Sweden)

    Quy Khac Ong

    Full Text Available Stirling et al., (10.1371/journal.pone.0108482 presented an analysis on some of our publications on the formation of stripe-like domains on mixed-ligand coated gold nanoparticles. The authors shed doubts on some of our results however no valid argument is provided against what we have shown since our first publication: scanning tunneling microscopy (STM images of striped nanoparticles show stripe-like domains that are independent of imaging parameters and in particular of imaging speed. We have consistently ruled out the presence of artifacts by comparing sets of images acquired at different tip speeds, finding invariance of the stipe-like domains. Stirling and co-workers incorrectly analyzed this key control, using a different microscope and imaging conditions that do not compare to ours. We show here data proving that our approach is rigorous. Furthermore, we never solely relied on image analysis to draw our conclusions; we have always used the chemical nature of the particles to assess the veracity of our images. Stirling et al. do not provide any justification for the spacing of the features that we find on nanoparticles: ~1 nm for mixed ligand particles and ~ 0.5 nm for homoligand particles. Hence our two central arguments remain unmodified: independence from imaging parameters and dependence on ligand shell chemical composition. The paper report observations on our STM images; none is a sufficient condition to prove that our images are artifacts. We thoroughly addressed issues related to STM artifacts throughout our microscopy work. Stirling et al. provide guidelines for what they consider good STM images of nanoparticles, such images are indeed present in our literature. They conclude that the evidences we provided to date are insufficient, this is a departure from one of the authors' previous article which concluded that our images were composed of artifacts. Given that four independent laboratories have reproduced our measurements and

  1. Spin Waves in 2D ferromagnetic square lattice stripe

    OpenAIRE

    Ahmed, Maher Z.

    2011-01-01

    In this work, the area and edges spin wave calculations were carried out using the Heisenberg Hamiltonian and the tridiagonal method for the 2D ferromagnetic square lattice stripe, where the SW modes are characterized by a 1D in-plane wave vector $q_x$. The results show a general and an unexpected feature that the area and edge spin waves only exist as optic modes. This behavior is also seen in 2D Heisenberg antiferromagnetic square lattice. This absence of the acoustic modes in the 2D square...

  2. Behavior and Body Patterns of the Larger Pacific Striped Octopus.

    Science.gov (United States)

    Caldwell, Roy L; Ross, Richard; Rodaniche, Arcadio; Huffard, Christine L

    2015-01-01

    Over thirty years ago anecdotal accounts of the undescribed Larger Pacific Striped Octopus suggested behaviors previously unknown for octopuses. Beak-to-beak mating, dens shared by mating pairs, inking during mating and extended spawning were mentioned in publications, and enticed generations of cephalopod biologists. In 2012-2014 we were able to obtain several live specimens of this species, which remains without a formal description. All of the unique behaviors listed above were observed for animals in aquaria and are discussed here. We describe the behavior, body color patterns, and postures of 24 adults maintained in captivity. Chromatophore patterns of hatchlings are also shown.

  3. Behavior and Body Patterns of the Larger Pacific Striped Octopus.

    Directory of Open Access Journals (Sweden)

    Roy L Caldwell

    Full Text Available Over thirty years ago anecdotal accounts of the undescribed Larger Pacific Striped Octopus suggested behaviors previously unknown for octopuses. Beak-to-beak mating, dens shared by mating pairs, inking during mating and extended spawning were mentioned in publications, and enticed generations of cephalopod biologists. In 2012-2014 we were able to obtain several live specimens of this species, which remains without a formal description. All of the unique behaviors listed above were observed for animals in aquaria and are discussed here. We describe the behavior, body color patterns, and postures of 24 adults maintained in captivity. Chromatophore patterns of hatchlings are also shown.

  4. Organ-specific transcriptome response of the small brown planthopper toward rice stripe virus.

    Science.gov (United States)

    Zhao, Wan; Lu, Lixia; Yang, Pengcheng; Cui, Na; Kang, Le; Cui, Feng

    2016-03-01

    Rice stripe virus (RSV) causes rice stripe disease and is transmitted by the small brown planthopper (Laodelphax striatellus, SBPH) in a persistent, circulative, and propagative manner. The alimentary canal and salivary gland of SBPH play important roles in viral replication and transmission. However, little is known about the underlying molecular functions of these two organs in the interaction between RSV and SBPH. In this study, organ-specific transcriptomes of the alimentary canal and salivary gland were analyzed in viruliferous and naïve SBPH. The number of differentially expressed unigenes in the alimentary canal was considerably greater than that in the salivary gland after RSV infection, and only 23 unigenes were co-regulated in the two organs. In the alimentary canal, genes involved in lysosome, digestion and detoxification were activated upon RSV infection, whereas the genes related to DNA replication and repair were suppressed. RSV activated RNA transport and repressed the MAPK, mTOR, Wnt, and TGF-beta signaling pathways in the salivary gland. The overall immune reaction toward RSV was much stronger in the salivary gland than in the alimentary canal. RSV activated the pattern recognition molecules and Toll pathway in the salivary gland but inhibited these two reactions in the alimentary canal. The responses from reactive oxygen and the immune-responsive effectors were stronger in the salivary gland than in the alimentary canal after RSV infection. These findings provide clues on the roles of the two organs in confronting RSV infection and aid in the understanding of the interaction between RSV and SBPHs.

  5. Direct observation of dynamic charge stripes in La2-xSrxNiO4

    Science.gov (United States)

    Anissimova, S.; Parshall, D.; Gu, G. D.; Marty, K.; Lumsden, M. D.; Chi, Songxue; Fernandez-Baca, J. A.; Abernathy, D. L.; Lamago, D.; Tranquada, J. M.; Reznik, D.

    2014-03-01

    The insulator-to-metal transition continues to be a challenging subject, especially when electronic correlations are strong. In layered compounds, such as La2-xSrxNiO4 and La2-xBaxCuO4, the doped charge carriers can segregate into periodically spaced charge stripes separating narrow domains of antiferromagnetic order. Although there have been theoretical proposals of dynamically fluctuating stripes, direct spectroscopic evidence of charge-stripe fluctuations has been lacking. Here we report the detection of critical lattice fluctuations, driven by charge-stripe correlations, in La2-xSrxNiO4 using inelastic neutron scattering. This scattering is detected at large momentum transfers where the magnetic form factor suppresses the spin fluctuation signal. The lattice fluctuations associated with the dynamic charge stripes are narrow in q and broad in energy. They are strongest near the charge-stripe melting temperature. Our results open the way towards the quantitative theory of dynamic stripes and for directly detecting dynamical charge stripes in other strongly correlated systems, including high-temperature superconductors such as La2-xSrxCuO4.

  6. Direct observation of dynamic charge stripes in La2 xSrxNiO4

    Energy Technology Data Exchange (ETDEWEB)

    Anissimova, S. [University of Colorado, Boulder; Parshall, D [University of Colorado, Boulder; Gu, Genda [Brookhaven National Laboratory (BNL); Marty, K. [Oak Ridge National Laboratory (ORNL); Lumsden, Mark D [ORNL; Chi, Songxue [ORNL; Fernandez-Baca, Jaime A [ORNL; Abernathy, D. [Oak Ridge National Laboratory (ORNL); Lamago, D. [Laboratoire Leon Brillouin, France; Tranquada, John M. [Brookhaven National Laboratory (BNL); Reznik, Dmitry [University of Colorado, Boulder

    2014-01-01

    The insulator-to-metal transition continues to be a challenging subject, especially when electronic correlations are strong. In layered compounds, such as La2 xSrxNiO4 and La2 xBaxCuO4, the doped charge carriers can segregate into periodically spaced charge stripes separating narrow domains of antiferromagnetic order. Although there have been theoretical proposals of dynamically fluctuating stripes, direct spectroscopic evidence of charge-stripe fluctuations has been lacking. Here we report the detection of critical lattice fluctuations, driven by charge-stripe correlations, in La2 xSrxNiO4 using inelastic neutron scattering. This scattering is detected at large momentum transfers where the magnetic form factor suppresses the spin fluctuation signal. The lattice fluctuations associated with the dynamic charge stripes are narrow in q and broad in energy. They are strongest near the charge-stripe melting temperature. Our results open the way towards the quantitative theory of dynamic stripes and for directly detecting dynamical charge stripes in other strongly correlated systems, including high-temperature superconductors such as La2 xSrxCuO4.

  7. Stripe order of holes and spins in oxygen-doped nickelates

    Science.gov (United States)

    Wochner, P.; Tranquada, J. M.; Buttrey, D. J.; Sachan, V.

    We present a detailed neutron-scattering study of the ordering of spins and holes in oxygen-doped La 2NiO 4.133. The temperature dependence of the stripe spacing, the width of the stripes and the extent of their pinning to the lattice are investigated.

  8. Color Fringes Bordering Black Stripes at the Bottom of a Swimming Pool

    Science.gov (United States)

    Fuster, Gonzalo; Rojas, Roberto; Slüsarenko, Viktor

    2016-09-01

    We have observed a nice example of chromatic dispersion due to refraction in water, in the form of color fringes bordering the black stripes that exist at the bottom of a swimming pool. Here we give a qualitative description of the phenomenon, explaining the role of the black stripes and the dispersive index of refraction of water.

  9. Is the striped mealybug, Ferrisia virgata, a vector of huanglongbing bacterium ‘Candidatus Liberibacter asiaticus’

    Science.gov (United States)

    This is the first report of ‘Ca. L. asiaticus’ (Las) present in striped mealybugs feeding on Las-infected periwinkle plants. In November 2010, specimens of a common greenhouse pest, the striped mealybug Ferrisia virgata (Cockerell) (Pseudococcidae; Hemiptera), were collected from Las-infected periw...

  10. Evaporative gold nanorod assembly on chemically stripe-patterned gradient surfaces

    NARCIS (Netherlands)

    Ahmad, I.; Jansen, H.P.; Swigchem, van J.; Ganser, C.; Teichert, C.; Zandvliet, H.J.W.; Kooij, E.S.

    2015-01-01

    Experimentally we explore the potential of using pre-defined motion of a receding contact line to control the deposition of nanoparticles from suspension. Stripe-patterned wettability gradients are employed, which consist of alternating hydrophilic and hydrophobic stripes with increasing macroscopic

  11. Comparative cost analysis of hybrid striped bass fingerling production in ponds and tanks

    Science.gov (United States)

    Year-round production of hybrid striped bass (female white bass Morone chrysops×male striped bass M. saxatilis) fingerlings would allow food fish growers to sell their product throughout the year, which would improve the consistency of market supply and cash flow for the farm. However, pond producti...

  12. Hybrid striped bass National Breeding Program: Research towards genetic improvement of a non-model species

    Science.gov (United States)

    The hybrid striped bass (HSB) farming industry at present relies almost totally on wild broodstock for annual production of larvae and fingerlings, and industry efforts to domesticate the parent species of the HSB (white bass: WB, Morone chrysops; striped bass: SB, M. saxatilis) have been fairly lim...

  13. Interplay of charge stripe order with structural distortions: a high pressure x-ray study

    Energy Technology Data Exchange (ETDEWEB)

    Zimmermann, M. von [Hamburger Synchrotronstrahlungslabor HASYLAB at Deutsches Elektronen-Synchrotron, Hamburg (Germany); Huecker, M.; Tranquada, J.M.; Gu, G.D [Brookhaven National Laboratory, Upton, New York (United States); Debessai, M.; Schilling, J.S. [Dept. of Physics, Washington University, St. Louis, Missouri (United States)

    2009-07-01

    The stability of charge stripe order in La{sub 2-x}Ba{sub x}CuO{sub 4} (LBCO) is still poorly understood. At x=1/8 LBCO exhibits a pronounced suppression of superconductivity and a static ordering of of spins and charge into a stripe pattern. At the same doping a structural transition from the usual orthorhombic phase (LTO) into the low temperature tetragonal phase (LTT) is observed. By the application of pressure the stability of the LTT and the LTO phase can be tuned and thus the influence of these structural distortion on the stripe order be studied. Using high energy X-ray diffraction the presence of charge stripes in a lattice without long range distortions could be found, indicating that electronic effects also contribute to the stablity if stripe order.

  14. Radiative striped wind model for gamma-ray bursts

    CERN Document Server

    Bégué, D; Lyubarski, Y

    2016-01-01

    In this paper we revisit the striped wind model in which the wind is accelerated by magnetic reconnection. In our treatment, radiation is included as an independent component, and two scenarios are considered. In the first one, radiation cannot stream efficiently through the reconnection layer, while the second scenario assumes that radiation is homogeneous in the striped wind. We show how these two assumptions affect the dynamics. In particular, we find that the asymptotic radial evolution of the Lorentz factor is not strongly modified whether radiation can stream through the reconnection layer or not. On the other hand, we show that the width, density and temperature of the reconnection layer are strongly dependent on these assumptions. We then apply the model to the gamma-ray burst context and find that photons cannot diffuse efficiently through the reconnection layer below radius $r_{\\rm D}^{\\Delta} \\sim 10^{10.5}$ cm, which is about an order of magnitude below the photospheric radius. Above $r_{\\rm D}^{\\...

  15. Radiative striped wind model for gamma-ray bursts

    Science.gov (United States)

    Bégué, D.; Pe'er, A.; Lyubarsky, Y.

    2017-01-01

    In this paper we revisit the striped wind model in which the wind is accelerated by magnetic reconnection. In our treatment, radiation is included as an independent component, and two scenarios are considered. In the first one, radiation cannot stream efficiently through the reconnection layer, while the second scenario assumes that radiation is homogeneous in the striped wind. We show how these two assumptions affect the dynamics. In particular, we find that the asymptotic radial evolution of the Lorentz factor is not strongly modified whether radiation can stream through the reconnection layer or not. On the other hand, we show that the width, density and temperature of the reconnection layer are strongly dependent on these assumptions. We then apply the model to the gamma-ray burst context and find that photons cannot diffuse efficiently through the reconnection layer below radius r_D^{Δ } ˜ 10^{10.5} cm, which is about an order of magnitude below the photospheric radius. Above r_D^{Δ }, the dynamics asymptotes to the solution of the scenario in which radiation can stream through the reconnection layer. As a result, the density of the current sheet increases sharply, providing efficient photon production by the Bremsstrahlung process which could have profound influence on the emerging spectrum. This effect might provide a solution to the soft photon problem in GRBs.

  16. LONGITUDINALLY STRIPED FABRIC DESIGN WITH A MODIFIED WEIGHT

    Directory of Open Access Journals (Sweden)

    OANA Dorina

    2014-05-01

    Full Text Available There are cases when the mass of woven fabrics requiring amendment intervening in the internal structure of the fabric, the reason most often for economic reasons, but also for the diversification by look. The internal structure of striped fabric obtained by combining groups wire ties, densities and / or different fineness creates a specific case on change of fabric weight. Each stripe is a woven fabric whose features differ, in some cases significantly to the bars side by side. This is the reason why the change of mass of such a woven fabrics, it is not so simple as in the case of fabric with a uniform structure. Changing the whole of the fabric weight can be done by changing the mass of each partial woven fabrics.The proposed method for mass modification consists in identifying and determining the partial structural fabric components and their mass change. To change the mass densities chosen method which involves designing a woven fabrics with weft yarn density, so the fabric assembly reference model resulted in a new woven fabric with a mass change After studying the structural features of these fabrics, and methods used to design woven fabrics with weight change , it has been found that there are other ways to solve this problem they known by has can achieve the same results but the simplest way.

  17. A study of the evolution of rust on Mo-Cu-bearing fire-resistant steel submitted to simulated atmospheric corrosion

    Energy Technology Data Exchange (ETDEWEB)

    Hao Long [State Key Laboratory for Corrosion and Protection, Institute of Metal Research, Chinese Academy of Sciences, Wencui Road 62, Shenyang 110016 (China); Zhang Sixun [College of Material and Metallurgy, Northeastern University, Wenhua Road 3, Shenyang 110004 (China); Technical Centre of Laiwu Steel Group, Ltd., Changsheng Road 23, Laiwu 271104 (China); Dong Junhua, E-mail: jhdong@imr.ac.cn [State Key Laboratory for Corrosion and Protection, Institute of Metal Research, Chinese Academy of Sciences, Wencui Road 62, Shenyang 110016 (China); Ke Wei [State Key Laboratory for Corrosion and Protection, Institute of Metal Research, Chinese Academy of Sciences, Wencui Road 62, Shenyang 110016 (China)

    2012-01-15

    Highlights: Black-Right-Pointing-Pointer The rusting evolution of a Mo-Cu-bearing fire-resistant steel in a simulated industrial atmosphere was investigated. Black-Right-Pointing-Pointer The rusting evolution of the steel is related to the rust composition, structure, and electrochemical characteristics. Black-Right-Pointing-Pointer Increased content of {alpha}-FeOOH and decreased {gamma}-FeOOH and Fe{sub 3}O{sub 4} indicate the enhanced resistance of the rust. Black-Right-Pointing-Pointer Mo and Cu are involved in the formation of molybdate and Cu(I)-bearing compounds in the rust. - Abstract: The corrosion evolution of a Mo-Cu-bearing fire-resistant steel in a simulated industrial atmosphere was investigated by corrosion weight gain, XRD, EPMA, XPS, and polarization curves. The results indicate that the corrosion kinetics is closely related to the rust composition and electrochemical properties. As the corrosion proceeds, the relative content of {gamma}-FeOOH and Fe{sub 3}O{sub 4} decreases and {alpha}-FeOOH increases, and the rust layer becomes compact and adherent to steel substrate. Molybdenum and copper enrich in the inner rust layer, especially at the bottom of the corrosion nest, forming non-soluble molybdate and Cu(I)-bearing compounds responsible for enhanced corrosion resistance of the rust layer.

  18. Effects of an antidepressant mixture on the brain serotonin and predation behavior of hybrid striped bass.

    Science.gov (United States)

    Bisesi, Joseph H; Sweet, Lauren E; van den Hurk, Peter; Klaine, Stephen J

    2016-04-01

    Antidepressants have been found in measurable concentrations in final treated wastewater effluent and receiving waters throughout the world. Studies have shown that these concentrations are typically not overtly toxic, but the psychotropic mode of action of these chemicals warrants examination of their behavioral effects. Exposure of hybrid striped bass to the antidepressants fluoxetine or venlafaxine alone has been shown to cause decreased brain serotonin levels and increased time to capture prey at concentrations typically 1 to 2 orders of magnitude higher than environmentally relevant concentrations. In the present study, equally effective doses of fluoxetine and venlafaxine were used to perform a mixture study, using a toxic unit approach to determine whether these antidepressants may act in an additive manner at lower concentrations. The results indicated that mixtures of these antidepressants caused decreased brain serotonin and increased time to capture prey at concentrations lower than reported in previous studies. Low concentration mixtures caused an additive effect on brain serotonin levels and time to capture prey, whereas higher concentrations were less than additive. The results were consistent with the dose addition concept, with higher concentration mixtures potentially saturating the effects on serotonin in the brain. Results from the present study indicate that antidepressants have the potential to be additive on the biochemical and individual scale, which necessitates more robust analysis of antidepressant mixtures and their potential to act together in low concentration scenarios.

  19. Essential oils for rust control on coffee plants Óleos essenciais no controle da ferrugem em cafeeiro

    Directory of Open Access Journals (Sweden)

    Ricardo Borges Pereira

    2012-02-01

    Full Text Available Rust is considered the most important disease in coffee because it causes severe defoliation in plants and, consequently, reduction in productivity. This study evaluated the in vitro effect of essential oils of cinnamon, citronella, lemongrass, clove, tea tree, thyme, neem and eucalyptus on the germination of urediniospores of Hemileia vastatrix; the effectiveness of these oils to control rust on seedlings of coffee cultivars Catucaí 2SL, Catuaí IAC 62 and Mundo Novo 379/19 in the greenhouse; and the effect of more promising oils on urediniospores of H. vastatrix by transmission electron microscopy (TEM. All the essential oils inhibited the germination of urediniospores with increasing concentrations. All oils promoted partial control of the disease in the greenhouse. However, the oils of thyme, clove and citronella, at a concentration of 1000 µL L-1, were most effective in controlling the disease on cultivars Catucaí 2SL, Catuaí IAC 62 and Mundo Novo 379/19, respectively. The images generated in TEM showed that urediniospores exposed to oils of clove, citronella and thyme promoted cellular disorganization and cytoplasmic vacuolization, which was more pronounced in urediniospores exposed to citronella oil. The oils of thyme, clove and citronella are promising for the control of rust in coffee.A ferrugem é considerada a doença de maior importância no cafeeiro, pois causa acentuada desfolha nas plantas e, consequentemente, redução na produtividade. Este trabalho avaliou o efeito in vitro de óleos essenciais de canela, citronela, capim-limão, cravo-da-índia, árvore-de-chá, tomilho, nim e eucalipto na germinação de urediniósporos de Hemileia vastatrix; a eficácia desses óleos no controle da ferrugem em mudas de cafeeiro das cultivares Catucaí 2SL, Catuaí IAC 62 e Mundo Novo 379/19 em casa de vegetação; e o efeito dos óleos mais promissores sobre urediniósporos de H. vastatrix por meio de microscopia eletrônica de transmiss

  20. Early warning system for coffee rust disease based on error correcting output codes: a proposal

    Directory of Open Access Journals (Sweden)

    David Camilo Corrales

    2014-12-01

    Full Text Available Colombian coffee producers have had to face the severe consequences of the coffee rust disease since it was first reported in the country in 1983. Recently, machine learning researchers have tried to predict infection through classifiers such as decision trees, regression Support Vector Machines (SVM, non-deterministic classifiers and Bayesian Networks, but it has been theoretically and empirically demonstrated that combining multiple classifiers can substantially improve the classification performance of the constituent members. An Early Warning System (EWS for coffee rust disease was therefore proposed based on Error Correcting Output Codes (ECOC and SVM to compute the binary functions of Plant Density, Shadow Level, Soil Acidity, Last Nighttime Rainfall Intensity and Last Days Relative Humidity.

  1. The corrosion protection mechanism of rust converters: An electrochemical impedance spectroscopy study

    Energy Technology Data Exchange (ETDEWEB)

    Collazo, A. [ENCOMAT Group, ETSEI, Universidade de Vigo, Campus Universitario, 36310 Vigo (Spain); Novoa, X.R., E-mail: rnovoa@uvigo.e [ENCOMAT Group, ETSEI, Universidade de Vigo, Campus Universitario, 36310 Vigo (Spain); Perez, C.; Puga, B. [ENCOMAT Group, ETSEI, Universidade de Vigo, Campus Universitario, 36310 Vigo (Spain)

    2010-08-30

    Oxide converters represent an interesting alternative for the protection of steel surfaces that have some degree of rust. Although the mechanism of these converters is not clear, it is assumed that they react with iron oxides and generate new compounds that may have a passivation effect on the steel surface. This last point is not well established, and several authors have even spoken of an accelerating effect of these compounds. We present here a study of the electrochemical behaviour of iron oxides immersed in the rust converter. The modulus of the impedance increases significantly after a certain time of immersion, suggesting that the electronic conductivity and, consequently, the rate of the cathodic reaction tend to decrease.

  2. Major Transcriptome Reprogramming Underlies Floral Mimicry Induced by the Rust Fungus Puccinia monoica in Boechera stricta

    Science.gov (United States)

    Haugen, Riston H.; Saunders, Diane G. O.; Leonelli, Lauriebeth; MacLean, Dan; Hogenhout, Saskia A.; Kamoun, Sophien

    2013-01-01

    Pucciniamonoica is a spectacular plant parasitic rust fungus that triggers the formation of flower-like structures (pseudoflowers) in its Brassicaceae host plant Boecherastricta. Pseudoflowers mimic in shape, color, nectar and scent co-occurring and unrelated flowers such as buttercups. They act to attract insects thereby aiding spore dispersal and sexual reproduction of the rust fungus. Although much ecological research has been performed on P. monoica-induced pseudoflowers, this system has yet to be investigated at the molecular or genomic level. To date, the molecular alterations underlying the development of pseudoflowers and the genes involved have not been described. To address this, we performed gene expression profiling to reveal 256 plant biological processes that are significantly altered in pseudoflowers. Among these biological processes, plant genes involved in cell fate specification, regulation of transcription, reproduction, floral organ development, anthocyanin (major floral pigments) and terpenoid biosynthesis (major floral volatile compounds) were down-regulated in pseudoflowers. In contrast, plant genes involved in shoot, cotyledon and leaf development, carbohydrate transport, wax biosynthesis, cutin transport and L-phenylalanine metabolism (pathway that results in phenylethanol and phenylacetaldehyde volatile production) were up-regulated. These findings point to an extensive reprogramming of host genes by the rust pathogen to induce floral mimicry. We also highlight 31 differentially regulated plant genes that are enriched in the biological processes mentioned above, and are potentially involved in the formation of pseudoflowers. This work illustrates the complex perturbations induced by rust pathogens in their host plants, and provides a starting point for understanding the molecular mechanisms of pathogen-induced floral mimicry. PMID:24069397

  3. Major transcriptome reprogramming underlies floral mimicry induced by the rust fungus Puccinia monoica in Boechera stricta.

    Directory of Open Access Journals (Sweden)

    Liliana M Cano

    Full Text Available Pucciniamonoica is a spectacular plant parasitic rust fungus that triggers the formation of flower-like structures (pseudoflowers in its Brassicaceae host plant Boecherastricta. Pseudoflowers mimic in shape, color, nectar and scent co-occurring and unrelated flowers such as buttercups. They act to attract insects thereby aiding spore dispersal and sexual reproduction of the rust fungus. Although much ecological research has been performed on P. monoica-induced pseudoflowers, this system has yet to be investigated at the molecular or genomic level. To date, the molecular alterations underlying the development of pseudoflowers and the genes involved have not been described. To address this, we performed gene expression profiling to reveal 256 plant biological processes that are significantly altered in pseudoflowers. Among these biological processes, plant genes involved in cell fate specification, regulation of transcription, reproduction, floral organ development, anthocyanin (major floral pigments and terpenoid biosynthesis (major floral volatile compounds were down-regulated in pseudoflowers. In contrast, plant genes involved in shoot, cotyledon and leaf development, carbohydrate transport, wax biosynthesis, cutin transport and L-phenylalanine metabolism (pathway that results in phenylethanol and phenylacetaldehyde volatile production were up-regulated. These findings point to an extensive reprogramming of host genes by the rust pathogen to induce floral mimicry. We also highlight 31 differentially regulated plant genes that are enriched in the biological processes mentioned above, and are potentially involved in the formation of pseudoflowers. This work illustrates the complex perturbations induced by rust pathogens in their host plants, and provides a starting point for understanding the molecular mechanisms of pathogen-induced floral mimicry.

  4. Efficient dechlorination of carbon tetrachloride by hydrophobic green rust intercalated with dodecanoate anions

    DEFF Research Database (Denmark)

    Ayala Luis, Karina Barbara; Ginette Anneliese Cooper, Nicola; Bender Koch, Christian

    2012-01-01

    The reductive dechlorination of carbon tetrachloride (CT) by Fe-II-Fe-III hydroxide (green rust) intercalated with dodecanoate, (Fe4Fe2III)-Fe-II (OH)(12)(C12H23O2)(2)center dot gamma H2O (designated GR(C12)), at pH similar to 8 and at room temperature was investigated. CT at concentration levels...

  5. Cryptosexuality and the Genetic Diversity Paradox in Coffee Rust, Hemileia vastatrix

    OpenAIRE

    Carlos Roberto de Carvalho; Ronaldo C Fernandes; Guilherme Mendes Almeida Carvalho; Barreto, Robert W.; Evans, Harry C.

    2011-01-01

    BACKGROUND: Despite the fact that coffee rust was first investigated scientifically more than a century ago, and that the disease is one of the major constraints to coffee production--constantly changing the socio-economic and historical landscape of the crop--critical aspects of the life cycle of the pathogen, Hemileia vastatrix, remain unclear. The asexual urediniospores are regarded as the only functional propagule: theoretically, making H. vastatrix a clonal species. However, the well-doc...

  6. Resistance to leaf rust in coffee carrying S H3 gene and others S H genes

    Directory of Open Access Journals (Sweden)

    Gustavo Hiroshi Sera

    2007-09-01

    Full Text Available The aim of this work was to evaluate the resistance to rust in coffee carrying S H3 gene and other S H genes. Twenty one CIFC’s coffee trees with several resistance genes S H were evaluated in field conditions. All the evaluated coffees carrying Sh3 gene presented resistance to the rust. It was possible that rust races with the virulence gene v3 in the Paraná State didn’t exist. The S H3 gene in combination with genes S H5, S H6, S H7, S H8, S H9 and S H? would be very important to obtain cultivars with more durable resistance to the rust.O objetivo deste trabalho foi avaliar a resistência à ferrugem em cafeeiros portadores do gene S H3 e outros genes S H em Londrina, Paraná, Brasil. Foram avaliados vinte e um cafeeiros do CIFC com diferentes genes S H de resistência em condição de alta incidência natural em campo. Todos os cafeeiros avaliados portadores do gene S H3 apresentaram resistência à ferrugem. É possível que não existam raças de ferrugem com o gene de virulência v3 no Paraná. Plantas portadoras do gene S H3 em combinação com os genes S H5, S H6, S H7, S H8, S H9 e S H? seria muito importante para obter cultivares com resistência mais durável à ferrugem.

  7. IPR 107 – Dwarf arabic coffee cultivar with resistance to coffee leaf rust

    Directory of Open Access Journals (Sweden)

    Tumoru Sera

    2013-01-01

    Full Text Available ‘IPR 107’ was derived from a cross between ‘IAPAR 59’ and ‘Mundo Novo IAC 376-4’. ‘IPR 107’ is a dwarf medium sizeplant with medium precocity in ripening and with complete resistance to rust races in this time. This cultivar presents superior qualityand high yield in many coffee regions.

  8. Exploring the role of asexual multiplication in poplar rust epidemics: impact on diversity and genetic structure.

    Science.gov (United States)

    Barrès, Benoît; Dutech, Cyril; Andrieux, Axelle; Halkett, Fabien; Frey, Pascal

    2012-10-01

    Fungal plant pathogens, especially rust fungi (Pucciniales), are well known for their complex life cycles, which include phases of sexual and asexual reproduction. The effect of asexual multiplication on population genetic diversity has been investigated in the poplar rust fungus Melampsora larici-populina using a nested hierarchical sampling scheme. Four hierarchical levels were considered: leaf, twig, tree and site. Both cultivated and wild poplar stands were sampled at two time points at the start and end of rust epidemics. A total of 641 fungal isolates was analysed using nine microsatellite markers. This study revealed that the genetic signature of asexual multiplication in the wild poplar stand was seen only at lower hierarchical levels (leaf and twig). Moreover, we observed an erosion of clonal structure through time, with an increase in both gene and genotypic diversity. New genotypes contributed to host infection over time, which demonstrates the importance of allo-infection in the epidemic process in this host-pathogen system. Compared with the wild stands, the nearly lack of detection of clonal structure in the cultivated stands reflects the higher infection level on cultivated poplars. More generally, this genetic analysis illustrates the utility of population genetics approach for elucidating the proportion of asexual reproduction in the multiplication of isolates during an epidemic, and for proper quantification of asexual dispersal in plant pathogens.

  9. On the Analysis of the Moessbauer Spectra of the Rust Converted by Tannic and Phosphoric Acids

    Energy Technology Data Exchange (ETDEWEB)

    Barrero, C. A. [Universidad de Antioquia, Grupo de Estado Solido, Instituto de Fisica (Colombia); Rios, J. F. [Universidad de Antioquia, Grupo de Corrosion y Proteccion, Facultad de Ingenierias (Colombia); Morales, A. L. [Universidad de Antioquia, Grupo de Estado Solido, Instituto de Fisica (Colombia); Bohorquez, A.; Perez-Alcazar, G. [Universidad del Valle, Grupo de Metalurgia Fisica y Transiciones de Fase, Departamento de Fisica (Colombia)

    2003-06-15

    In previous work, we reported results on the action of rust converters based on a mixture of tannic and phosphoric acids, upon the rust formed on mild steel coupons. There, the rust before and after the application of converters were characterized by room-temperature Moessbauer spectroscopy, among other techniques. The present work is an extension of this one, and additional MS at 77 K, 130 K and 300 K for some samples are presented. Special emphasis is given to the methodology of analysis. Our results confirm previous findings that an important portion of the magnetite remains without conversion. New information was also derived: (i) the converters seem to affect more the magnetite octahedral (B) than the tetrahedral (A) sites; (ii) among the magnetite B sites, the Fe{sup 2+} is the most affected; (iii) at least 31% of magnetic goethite at 77 K is transformed by the converter; and (iv) the presence of an additional phase identified as ferrous phosphate, could be resolved unambiguously only at these lower temperatures.

  10. Neptunyl (NpO2+) interaction with green rust, GRNa,SO4

    DEFF Research Database (Denmark)

    Christiansen, Bo C.; Geckeis, Horst; Marquardt, Christian;

    2011-01-01

    Green rust (GR), a member of the Fe(II),Fe(III) layered double hydroxide mineral family, forms in groundwater and during steel corrosion. It has high surface area and is very reactive, especially for redox-sensitive elements such as some actinides. During neutron irradiation of nuclear fuel......, as are expected from radiolysis in a repository, the very mobile neptunyl-ion, NpO2+, would be the dominant aqueous neptunium species. In this work, we investigated the interaction of NpO2+ with green rust sodium sulphate (GRNa,SO4). The aim of the study was to define the processes involved, to determine...... the final redox speciation of Np, hence its potential mobility, and to characterise changes in the green rust. The GRNa,SO4 sorbed and reduced NpO2+ within minutes. Reduced Np(IV) was primarily found as precipitated nanoparticles at the edges of the GRNa,SO4 crystal platelets. The position of the particles...

  11. Cryptosexuality and the genetic diversity paradox in coffee rust, Hemileia vastatrix.

    Directory of Open Access Journals (Sweden)

    Carlos Roberto Carvalho

    Full Text Available BACKGROUND: Despite the fact that coffee rust was first investigated scientifically more than a century ago, and that the disease is one of the major constraints to coffee production--constantly changing the socio-economic and historical landscape of the crop--critical aspects of the life cycle of the pathogen, Hemileia vastatrix, remain unclear. The asexual urediniospores are regarded as the only functional propagule: theoretically, making H. vastatrix a clonal species. However, the well-documented emergence of new rust pathotypes and the breakdown in genetic resistance of coffee cultivars, present a paradox. METHODS AND RESULTS: Here, using computer-assisted DNA image cytometry, following a modified nuclear stoichiometric staining technique with Feulgen, we show that meiosis occurs within the urediniospores. Stages of spore development were categorised based on morphology, from the spore-mother cell through to the germinating spore, and the relative nuclear DNA content was quantified statistically at each stage. CONCLUSIONS: Hidden sexual reproduction disguised within the asexual spore (cryptosexuality could explain why new physiological races have arisen so often and so quickly in Hemileia vastatrix. This could have considerable implications for coffee breeding strategies and may be a common event in rust fungi, especially in related genera occupying the same basal phylogenetic lineages.

  12. Transcriptomic and metabolomic analyses identify a role for chlorophyll catabolism and phytoalexin during Medicago nonhost resistance against Asian soybean rust.

    Science.gov (United States)

    Ishiga, Yasuhiro; Uppalapati, Srinivasa Rao; Gill, Upinder S; Huhman, David; Tang, Yuhong; Mysore, Kirankumar S

    2015-08-12

    Asian soybean rust (ASR) caused by Phakopsora pachyrhizi is a devastating foliar disease affecting soybean production worldwide. Understanding nonhost resistance against ASR may provide an avenue to engineer soybean to confer durable resistance against ASR. We characterized a Medicago truncatula-ASR pathosystem to study molecular mechanisms of nonhost resistance. Although urediniospores formed appressoria and penetrated into epidermal cells of M. truncatula, P. pachyrhizi failed to sporulate. Transcriptomic analysis revealed the induction of phenylpropanoid, flavonoid and isoflavonoid metabolic pathway genes involved in the production of phytoalexin medicarpin in M. truncatula upon infection with P. pachyrhizi. Furthermore, genes involved in chlorophyll catabolism were induced during nonhost resistance. We further characterized one of the chlorophyll catabolism genes, Stay-green (SGR), and demonstrated that the M. truncatula sgr mutant and alfalfa SGR-RNAi lines showed hypersensitive-response-like enhanced cell death upon inoculation with P. pachyrhizi. Consistent with transcriptomic analysis, metabolomic analysis also revealed the accumulation of medicarpin and its intermediate metabolites. In vitro assay showed that medicarpin inhibited urediniospore germination and differentiation. In addition, several triterpenoid saponin glycosides accumulated in M. truncatula upon inoculation with P. pachyrhizi. In summary, using multi-omic approaches, we identified a correlation between phytoalexin production and M. truncatula defense responses against ASR.

  13. Direct proof of static charge stripe correlations in La2-xBaxCuO4

    Science.gov (United States)

    Chen, X. M.; Thampy, V.; Mazzoli, C.; Barbour, A.; Gu, G.; Hill, J. P.; Tranquada, J. M.; Dean, M. P. M.; Wilkins, S. B.

    The nature of charge stripe order in the cuprates, and in particular whether the stripes are static or dynamic, is a key issue in understanding the relationship between stripes and superconductivity. In La2-xBaxCuO4 (LBCO) a low temperature structural distortion is widely believed to pin stripes into fixed, static domains, but such an assertion has never been directly verified. We performed resonant soft x-ray photon correlation spectroscopy (XPCS) to probe the charge order Bragg peak of 1/8 doped LBCO. At low temperatures, we observe time-independent x-ray speckle patterns persisting for more than three hours, proving the static nature of the stripes and we go on to discuss how stripe order melts with increasing temperature. Our results demonstrate that the combination of XPCS with diffraction limited light sources such as the National Synchrotron Light Source II can probe the dynamics of even subtle order parameters such as stripes in the cuprates. Work performed at Brookhaven National Laboratory was supported by the US Department of Energy, Division of Materials Science, under Contract No. DE-AC02-98CH10886. Use of the National Synchrotron Light Source II was supported under Contract No. DE-SC0012704.

  14. Structure and evolution of electron "zebra stripes" in the inner radiation belt

    Science.gov (United States)

    Liu, Y.; Zong, Q.-G.; Zhou, X.-Z.; Foster, J. C.; Rankin, R.

    2016-05-01

    "Zebra stripes" are newly found energetic electron energy-spatial (L shell) distributed structure with an energy between tens to a few hundreds keV in the inner radiation belt. Using high-quality measurements of electron fluxes from Radiation Belt Storm Probes Ion Composition Experiment (RBSPICE) on board the twin Van Allen Probes, we carry out case and statistical studies from April 2013 to April 2014 to study the structural and evolutionary characteristics of zebra stripes below L = 3. It is revealed that the zebra stripes can be transformed into evenly spaced patterns in the electron drift frequency coordinate: the detrended logarithmic fluxes in each L shell region can be well described by sinusoidal functions of drift frequency. The "wave number" of this sinusoidal function, which corresponds to the reciprocal of the gap between two adjacent peaks in the drift frequency coordinate, increases in proportion to real time. Further, these structural and evolutionary characteristics of zebra stripes can be reproduced by an analytic model of the evolution of the particle distribution under a single monochromatic or static azimuthal electric field. It is shown that the essential ingredient for the formation of multiple zebra stripes is the periodic drift of particles. The amplitude of the zebra stripes shows a good positive correlation with Kp index, which indicates that the generation mechanism of zebra stripes should be related to geomagnetic activities.

  15. Testing the thermal-niche oxygen-squeeze hypothesis for estuarine striped bass

    Science.gov (United States)

    Kraus, Richard T.; Secor, D.H.; Wingate, Rebecca L.

    2015-01-01

    In many stratified coastal ecosystems, conceptual and bioenergetics models predict seasonal reduction in quality and quantity of fish habitat due to high temperatures and hypoxia. We tested these predictions using acoustic telemetry of 2 to 4 kg striped bass (Morone saxatilis Walbaum) and high-resolution spatial water quality sampling in the Patuxent River, a sub-estuary of the Chesapeake Bay, during 2008 and 2009. Striped bass avoided hypoxic (dissolved oxygen ≤2 mg·l−1) subpycnocline waters, but frequently occupied habitats with high temperatures (>25 °C) in the summer months, as cooler habitats were typically not available. Using traditional concepts of the seasonal thermal-niche oxygen-squeeze, most of the Patuxent estuary would beconsidered unsuitable habitat for adult striped bass during summer. Application of a bioenergetics model revealed that habitats selected by striped bass during summer would support positive growth rates assuming fish could feed at one-half ofmaximum consumption. Occupancy of the estuary during summer by striped bass in this study was likely facilitated by sufficient prey and innate tolerance of high temperatures by sub-adult fish of the size range that we tagged. Our results help extend the thermalniche oxygen-squeeze hypothesis to native populations of striped bass in semi-enclosed coastal systems. Tolerance of for supraoptimal temperatures in our study supports recent suggestions by others that the thermal-niche concept for striped bass should be revised to include warmer temperatures.

  16. Quantitative Trait Loci for Resistance to Stripe Disease in Rice (Oryza sativa)

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    In order to map the quantitative trait loci for rice stripe resistance, a molecular linkage map was constructed based on the lines to rice stripe were investigated by both artificial inoculation at laboratory and natural infection in the field, and the ratios of ranged from 0 to 134.08 and from 6.25 to 133.6 under artificial inoculation at laboratory and natural infection in the field, respectively,and showed a marked bias towards resistant parent (Zhaiyeqing 8), indicating that the resistance to rice stripe was controlled by quantitative trait loci (QTL). QTL analysis showed that the QTLs detected by the two inoculation methods were completely different.Only one QTL, qSTV7, was detected under artificial inoculation, at which the Zhaiyeqing 8 allele increased the resistance to rice stripe, while two QTLs, qSTV5 and qSTV1, were detected under natural infection, in which resistant alleles came from Zhaiyeqing 8and Wuyujing 3, respectively. These results showed that resistant parent Zhaiyeqing 8 carried the alleles associated with the resistance to rice stripe virus and the small brown planthopper, and susceptible parent Wuyujing 3 also carried the resistant allele to rice stripe virus. In comparison with the results previously reported, QTLs detected in the study were new resistant genes to rice stripe disease. This will provide a new resistant resource for avoiding genetic vulnerability for single utilization of the resistant gene Stvb-i.

  17. Variation in resistance to the rust fungus Melampsora larici-populina Kleb. in Populus nigra L. in the Czech Republic

    Directory of Open Access Journals (Sweden)

    Štochlová P

    2016-02-01

    Full Text Available Differences in Populus nigra L. clone resistance to the rust fungus Melampsora larici-populina Kleb. (MLP were studied in field trials where infected trees were compared with fungicide-protected trees. MLP rust infections were assessed using a 6-point scale. Four parameters of poplar growth were also measured to gauge host response to infection: shoot thickness, shoot number at the end of the growing season, individual plant dry weight, and dry matter yield per unit area. Five of eight known pathogen virulence types were detected. Cumulative growth in shoot thickness in sprayed and unsprayed plots was similar in clones with high rust pathogen resistance, but significantly different in clones with low resistance. Clones with low resistance also exhibited delayed growth initiation in the year following infection, an effect attributed to lower food storage accumulated during the previous year, reflected in a reduction in stem diameter. Based on stem thickness measurements, it was confirmed growth ceased at the end of August. Average rust severity symptoms ranged from 2.75 to 4.22 on the 6-point scale. The percentage reduction for the various growth parameters resulting from rust infection ranged as follows: individual plant dry weight 5-64%; dry matter yield 21-66%; shoot number 17-46%; and stem diameter 1-35%. Exclusive of stem diameter, these reductions correlated with severity in MLP rust infection. The one exception was tolerance to rust infection displayed by one of the clones. Clones with the lowest growth reductions were 97/152 and 97/157. Growth and yield parameter variation as a result MLP resistance difference was observed among tested P. nigra clones. This variation can be viewed as confirmation that resistance observed in this study and P. nigra clones is a suite of quantitative traits. These findings have important implications for MLP resistance breeding programs.

  18. Theory of a continuous stripe melting transition in a two-dimensional metal: a possible application to cuprate superconductors.

    Science.gov (United States)

    Mross, David F; Senthil, T

    2012-06-29

    We construct a theory of continuous stripe melting quantum phase transitions in two-dimensional metals and the associated Fermi surface reconstruction. Such phase transitions are strongly coupled but yet theoretically tractable in situations where the stripe ordering is destroyed by proliferating doubled dislocations of the charge stripe order. The resulting non-Landau quantum critical point has strong stripe fluctuations which we show decouple dynamically from the Fermi surface even though static stripe ordering reconstructs the Fermi surface. We discuss connections to various stripe phenomena in the cuprates. We point out several puzzling aspects of old experimental results [G. Aeppli et al., Science 278, 1432 (1997)] on singular stripe fluctuations in the cuprates, and provide a possible explanation within our theory. These results may thus have been the first observation of non-Landau quantum criticality in an experiment.

  19. Diamagnetic vortex barrier stripes in underdoped BaFe2(As1-xPx) 2

    Science.gov (United States)

    Yagil, A.; Lamhot, Y.; Almoalem, A.; Kasahara, S.; Watashige, T.; Shibauchi, T.; Matsuda, Y.; Auslaender, O. M.

    2016-08-01

    We report magnetic force microscopy (MFM) measurements on underdoped BaFe2(As1 -xPx)2 (x =0.26 ) that show enhanced superconductivity along stripes parallel to twin boundaries. These stripes of enhanced diamagnetic response repel superconducting vortices and act as barriers for them to cross. The width of the stripes is hundreds of nanometers, on the scale of the penetration depth, well within the inherent spatial resolution of MFM and implying that the width is set by the interaction of the superconductor with the MFM's magnetic tip. Unlike similar stripes observed previously by scanning SQUID in the electron doped Ba (Fe1 -xCox)2As2 , the stripes in the isovalently doped BaFe2(As1 -xPx)2 disappear gradually when we warm the sample towards the superconducting transition temperature. Moreover, we find that the stripes move well below the reported structural transition temperature in BaFe2(As1 -xPx)2 and that they can be much denser than in the Ba (Fe1 -xCox)2As2 study. When we cool in finite magnetic field we find that some vortices appear in the middle of stripes, suggesting that the stripes may have an inner structure, which we cannot resolve. Finally, we use both vortex decoration at higher magnetic field and deliberate vortex dragging by the MFM magnetic tip to obtain bounds on the strength of the interaction between the stripes and vortices. We find that this interaction is strong enough to play a significant role in determining the critical current in underdoped BaFe2(As1 -xPx)2 .

  20. The Stripe 82 Massive Galaxy Project I: Catalog Construction

    CERN Document Server

    Bundy, Kevin; Saito, Shun; Bolton, Adam; Lin, Yen-Ting; Marason, Claudia; Nichol, Robert C; Schneider, Donald P; Thomas, Daniel; Wake, David A

    2015-01-01

    The Stripe 82 Massive Galaxy Catalog (S82-MGC) is the largest-volume stellar mass-limited sample of galaxies beyond z~1 constructed to date. Spanning 139.4 deg2, the S82-MGC includes a mass-limited sample of 41,770 galaxies with log Mstar > 11.2 to z~0.7, sampling a volume of 0.3 Gpc3, roughly equivalent to the volume of the Sloan Digital Sky Survey-I/II (SDSS-I/II) z 11.2 sample, and geometric masking. We provide near-IR based stellar mass estimates and compare these to previous estimates. All catalog products are made publicly available. The S82-MGC not only addresses previous statistical limitations in high-mass galaxy evolution studies but begins tackling inherent data challenges in the coming era of wide-field imaging surveys.

  1. Magnetic stripes in the UCoGe superconductor

    Energy Technology Data Exchange (ETDEWEB)

    Mora, Pablo de la [Departemento de Fisica, Facultad de Ciencias, Universidad Nacional Autonoma de Mexico, Apartado Postal 70-542, 04510 Mexico DF, Mexico and Institute de Investigacion en Materiales, Universidad Nacional Autonoma de Mexico, Campus Morelia (Mexico); Navarro, O, E-mail: delamora@unam.m [Instituto de Investigacion en Materiales, Universidad Nacional Autonoma de Mexico, Apartado Postal 70-360, 04510 Mexico DF (Mexico)

    2009-05-01

    The magnetic superconductor UCoGe is analyzed with an electronic structure package, spin-orbit coupling and intra-atomic repulsion (via Hubbard U{sub H}) were included. The possibility of an antiferromagnetic configuration is studied, but it is found to be unstable, also the non-collinear magnetization seems to be ruled out. The magnetization is given mainly by the Co-atoms with M = 0.6 mu{sub B}/f.u. The U-atoms have two magnetic moments; M = 0.07 and 0.32 mu{sub B}/f.u. arranged in an alternated planes along the b-direction forming magnetic stripes.

  2. Nuclear magnetic and quadrupole resonance studies of the stripes materials

    Energy Technology Data Exchange (ETDEWEB)

    Grafe, H.-J., E-mail: h.grafe@ifw-dresden.de [IFW Dresden, Institute for Solid State Research, P.O. Box 270116, D-01171 Dresden (Germany)

    2012-11-01

    Nuclear Magnetic and Quadrupole Resonance (NMR/NQR) is a powerful tool to probe electronic inhomogeneities in correlated electron systems. Its local character allows for probing different environments due to spin density modulations or inhomogeneous doping distributions emerging from the correlations in these systems. In fact, NMR/NQR is not only sensitive to magnetic properties through interaction of the nuclear spin, but also allows to probe the symmetry of the charge distribution and its homogeneity, as well as structural modulations, through sensitivity to the electric field gradient (EFG). We review the results of NMR and NQR in the cuprates from intrinsic spatial variations of the hole concentration in the normal state to stripe order at low temperatures, thereby keeping in mind the influence of doping induced disorder and inhomogeneities. Finally, we briefly discuss NQR evidence for local electronic inhomogeneities in the recently discovered iron pnictides, suggesting that electronic inhomogeneities are a common feature of correlated electron systems.

  3. Fermi-surface reconstruction by stripe order in cuprate superconductors.

    Science.gov (United States)

    Laliberté, F; Chang, J; Doiron-Leyraud, N; Hassinger, E; Daou, R; Rondeau, M; Ramshaw, B J; Liang, R; Bonn, D A; Hardy, W N; Pyon, S; Takayama, T; Takagi, H; Sheikin, I; Malone, L; Proust, C; Behnia, K; Taillefer, Louis

    2011-08-16

    The origin of pairing in a superconductor resides in the underlying normal state. In the cuprate high-temperature superconductor YBa(2)Cu(3)O(y) (YBCO), application of a magnetic field to suppress superconductivity reveals a ground state that appears to break the translational symmetry of the lattice, pointing to some density-wave order. Here we use a comparative study of thermoelectric transport in the cuprates YBCO and La(1.8-x)Eu(0.2)Sr(x)CuO(4) (Eu-LSCO) to show that the two materials exhibit the same process of Fermi-surface reconstruction as a function of temperature and doping. The fact that in Eu-LSCO this reconstruction coexists with spin and charge modulations that break translational symmetry shows that stripe order is the generic non-superconducting ground state of hole-doped cuprates.

  4. Stripe conductivity in La1.775Sr0.225NiO4

    Science.gov (United States)

    Pashkevich; Blinkin; Gnezdilov; Tsapenko; Eremenko; Lemmens; Fischer; Grove; Guntherodt; Degiorgi; Wachter; Tranquada; Buttrey

    2000-04-24

    We report Raman light-scattering and optical conductivity measurements on a single crystal of La1.775Sr0.225NiO4 which exhibits incommensurate charge-stripe order. The extra phonon peaks induced by stripe order can be understood in terms of the energies of phonons that occur at the charge-order wave vector Q(c). A strong Fano antiresonance for a Ni-O bond-stretching mode provides clear evidence for finite dynamical conductivity within the charge stripes.

  5. Stripe Conductivity in La1.775Sr0.225NiO4

    Science.gov (United States)

    Pashkevich, Yu. G.; Blinkin, V. A.; Gnezdilov, V. P.; Tsapenko, V. V.; Eremenko, V. V.; Lemmens, P.; Fischer, M.; Grove, M.; Güntherodt, G.; Degiorgi, L.; Wachter, P.; Tranquada, J. M.; Buttrey, D. J.

    2000-04-01

    We report Raman light-scattering and optical conductivity measurements on a single crystal of La1.775Sr0.225NiO4 which exhibits incommensurate charge-stripe order. The extra phonon peaks induced by stripe order can be understood in terms of the energies of phonons that occur at the charge-order wave vector Qc. A strong Fano antiresonance for a Ni-O bond-stretching mode provides clear evidence for finite dynamical conductivity within the charge stripes.

  6. Striped Bass Spawning in Non-Estuarine Portions of the Savannah River

    Energy Technology Data Exchange (ETDEWEB)

    Martin, D.; Paller, M.

    2007-04-17

    Historically, the estuarine portions of the Savannah River have been considered to be the only portion of the river in which significant amounts of striped bass (Morone saxatilis) spawning normally occur. A reexamination of data from 1983 through 1985 shows a region between River Kilometers 144 and 253 where significant numbers of striped bass eggs and larvae occur with estimated total egg production near that currently produced in the estuarine reaches. It appears possible that there are two separate spawning populations of striped bass in the Savannah River.

  7. Isotope effect in the superfluid density of high-temperature superconducting cuprates: stripes, pseudogap, and impurities.

    Science.gov (United States)

    Tallon, J L; Islam, R S; Storey, J; Williams, G V M; Cooper, J R

    2005-06-17

    Underdoped cuprates exhibit a normal-state pseudogap, and their spins and doped carriers tend to spatially separate into 1D or 2D stripes. Some view these as central to superconductivity and others as peripheral and merely competing. Using La(2-x)Sr(x)Cu(1-y)Zn(y)O4 we show that an oxygen isotope effect in Tc and in the superfluid density can be used to distinguish between the roles of stripes and pseudogap and also to detect the presence of impurity scattering. We conclude that stripes and pseudogap are distinct, and both compete and coexist with superconductivity.

  8. CROP YIELD OF CONILON COFFEE PLANTS OF DIFFERENT LEVELS OF VEGETATIVE VIGOR AND RUST SEVERITY

    Directory of Open Access Journals (Sweden)

    Wagner Nunes Rodrigues

    2012-12-01

    Full Text Available Os programas de melhoramento genético têm buscado disponibilizar cultivares resistentes à ferrugem, visto que o controle genético constitui o método mais econômico e eficiente no manejo dessa doença. Este trabalho objetivou estudar a relação entre a severidade da ferrugem, o vigor vegetativo e a capacidade produtiva de plantas de café conilon. O experimento foi realizado na Fazenda Experimental de Bananal do Norte (INCAPER, localizada em Cachoeiro de Itapemirim, no sul do Estado do Espírito Santo. Foram avaliadas as produtividades de 20 combinações entre 4 níveis de vigor vegetativo e 5 níveis de severidade da ferrugem. O delineamento experimental utilizado foi em blocos casualizados com 4 repetições e 5 plantas por parcela experimental. Verificou-se a formação de cinco grupos de médias homogêneas para as combinações e ajustou-se as médias a um modelo de superfície de resposta. As combinações entre os níveis de vigor vegetativo e severidade da ferrugem influenciaram a produtividade do cafeeiro conilon nas condições avaliadas. O fator vigor vegetativo foi mais limitante que o fator severidade da ferrugem na determinação da produtividade de plantas de café conilon.The breeding programs have sought to provide rust-resistant cultivars, since the genetic control is the most economical and efficient method of management of this plant disease. This study investigated the relationship between the rust severity, vigor and crop yield capacity of conilon coffee plants. The experiment was conducted in the Experimental Farm of Bananal do Norte (INCAPER, located in Cachoeito de Itapemirim, in the southern state of Espírito Santo. The crop yield was evaluated in 20 combinations of 4 levels of vigor and 5 levels of rust severity. The experimental design used was in randomized blocks, with four replications and 5 plants per plot. There was the formation of five groups of homogeneous means for the combinations and the means was

  9. Association analysis of stem rust resistance in U.S. winter wheat.

    Science.gov (United States)

    Zhang, Dadong; Bowden, Robert L; Yu, Jianming; Carver, Brett F; Bai, Guihua

    2014-01-01

    Stem rust has become a renewed threat to global wheat production after the emergence and spread of race TTKSK (also known as Ug99) and related races from Africa. To elucidate U.S. winter wheat resistance genes to stem rust, association mapping was conducted using a panel of 137 lines from cooperative U.S. winter wheat nurseries from 2008 and simple sequence repeat (SSR) and sequence tagged site (STS) markers across the wheat genome. Seedling infection types were evaluated in a greenhouse experiment using six U.S. stem rust races (QFCSC, QTHJC, RCRSC, RKQQC, TPMKC and TTTTF) and TTKSK, and adult plant responses to bulked U.S. races were evaluated in a field experiment. A linearization algorithm was used to convert the qualitative Stakman scale seedling infection types for quantitative analysis. Association mapping successfully detected six known stem rust seedling resistance genes in U.S. winter wheat lines with frequencies: Sr6 (12%), Sr24 (9%), Sr31 (15%), Sr36 (9%), Sr38 (19%), and Sr1RSAmigo (8%). Adult plant resistance gene Sr2 was present in 4% of lines. SrTmp was postulated to be present in several hard winter wheat lines, but the frequency could not be accurately determined. Sr38 was the most prevalent Sr gene in both hard and soft winter wheat and was the most effective Sr gene in the adult plant field test. Resistance to TTKSK was associated with nine markers on chromosome 2B that were in linkage disequilibrium and all of the resistance was attributed to the Triticum timopheevii chromosome segment carrying Sr36. Potential novel rust resistance alleles were associated with markers Xwmc326-203 on 3BL, Xgwm160-195 and Xwmc313-225 on 4AL near Sr7, Xgwm495-182 on 4BL, Xwmc622-147 and Xgwm624-146 on 4DL, and Xgwm334-123 on 6AS near Sr8. Xwmc326-203 was associated with adult plant resistance to bulked U.S. races and Xgwm495-182 was associated with seedling resistance to TTKSK.

  10. Numerical Simulation of Thermal Striping Phenomena in a T-Junction Piping System Using Large Eddy Simulation

    Science.gov (United States)

    Tanaka, Masa-Aki; Ohshima, Hiroyuki; Monji, Hideaki

    At the Japan Atomic Energy Agency (JAEA), the simulation code “MUGTHES (MUlti Geometry simulation code for THErmal-hydraulic and Structure heat conduction analysis in boundary fitted coordinate)” has been developed to evaluate thermal striping phenomena that are caused by the turbulence mixing of fluids at different temperatures. In this paper, numerical schemes for thermal-hydraulic simulation employed in MUGTHES are described, including the LES model. A simple method to limit numerical oscillation is adopted in energy equation solutions. A new iterative method to solve the Poisson equation in the BFC system is developed for effective transient calculations. This method is based on the BiCGSTAB method and the SOR technique. As the code validation of MUGTHES, a numerical simulation in a T-junction piping system with the LES approach was conducted. Numerical results related to velocity and fluid temperature distributions were compared with existing water experimental data and the applicability of numerical schemes with the LES model in MUGTHES to the thermal striping phenomenon was confirmed.

  11. Depletion of the chloramine-T marker residue, para-toluenesulfonamide, from skin-on fillet tissue of hybrid striped bass, rainbow trout, and yellow perch

    Science.gov (United States)

    Meinertz, J.R.; Stehly, G.R.; Greseth, Shari L.; Gaikowski, M.P.; Gingerich, W.H.

    2004-01-01

    Waterborne exposure to n-sodium-n-chloro-p-toluenesulfonamide (chloramine-T) is an effective treatment for controlling fish mortalities caused by bacterial gill disease (BGD). Currently, data are being generated to gain United States Food and Drug Administration (FDA) approval for the use of chloramine-T in aquaculture. As part of the data required for an approval, depletion of the chloramine-T marker residue (para-toluenesulfonamide [p-TSA]) from the edible fillet tissue of exposed fish must be determined. Hybrid striped bass (Morone saxatilis??Morone chrysops; mean weight 357 g), rainbow trout (Oncorhynchus mykiss; mean weight 457 g), and yellow perch (Perca flavescens; mean weight 144 g) were exposed to 20 mg/l of chloramine-T for 60 min on 4 consecutive days (the most aggressive treatment expected for approved use in the United States). Groups of fish (n=15 or 19) were sampled immediately after the last treatment and periodically through 48 or 168 h after the treatment phase. Duplicate subsamples of skin-on fillet tissue from each fish were analyzed for p-TSA. Mean p-TSA concentrations in fillet tissue from fish sampled immediately after the last treatment were 142 ng/g (hybrid striped bass), 97 ng/g (rainbow trout), and 150 ng/g (yellow perch). Mean p-TSA concentrations at terminal sample times were 94 (168 h; hybrid striped bass), 74 (48 h; rainbow trout), and 35 ng/g (168 h; yellow perch). The half-lives of p-TSA in fillet tissue from fish near or at market size were 11.4 (hybrid striped bass), 4.3 (rainbow trout), and 3.2 days (yellow perch).

  12. Contaminants in striped bass from the flint and Apalachicola Rivers 1986-1989

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — Five striped bass (Morone saxitilis), collected between April 1986 and May 1989 from the Flint River at Albany, Georgia, and the Apalachicola River at Chattahoochee,...

  13. Operational Plan and Environmental Assessment for Striped Skunk and Raccoon Management : Benton Lake National Wildlife Refuge

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The action proposed in this plan is to trap and remove striped skunk and raccoon at Benton Lake National Wildlife Refuge. The purpose of the action is to manage, not...

  14. Topological defects and misfit strain in magnetic stripe domains of lateral multilayers with perpendicular magnetic anisotropy.

    Science.gov (United States)

    Hierro-Rodriguez, A; Cid, R; Vélez, M; Rodriguez-Rodriguez, G; Martín, J I; Álvarez-Prado, L M; Alameda, J M

    2012-09-14

    Stripe domains are studied in perpendicular magnetic anisotropy films nanostructured with a periodic thickness modulation that induces the lateral modulation of both stripe periods and in-plane magnetization. The resulting system is the 2D equivalent of a strained superlattice with properties controlled by interfacial misfit strain within the magnetic stripe structure and shape anisotropy. This allows us to observe, experimentally for the first time, the continuous structural transformation of a grain boundary in this 2D magnetic crystal in the whole angular range. The magnetization reversal process can be tailored through the effect of misfit strain due to the coupling between disclinations in the magnetic stripe pattern and domain walls in the in-plane magnetization configuration.

  15. 柠檬红锈藻病为害与药剂防治%Occurrence and Chemical Control of Red Rust Alga in Lemon

    Institute of Scientific and Technical Information of China (English)

    段惠芬; 王自然; 杨恩聪; 郭俊; 高俊燕

    2014-01-01

    Lemon red rust alga caused by Cephaleuros parasicas Karst is a widespread and serious disease of lemon branches in Dehong , Yunnan province , and it results in the premature senility of lemon tree and the decrease in lemon yield .The resistances of lemon plants and branches at different ages to red rust alga were investigated .It was found that red rust alga occurred in the lemon plants which have been planted for 2~5 years.Its occurrence in 3-year-old and 4-year-old plants was more serious with the incidence of 100%, and their disease indexes were 72.20%and 84.27%respectively.The 2~5-year-old lemon branches were infected by this alga with the incidence of 100%, and the disease indexes of 2 -year -old and 3 -year -old branches were 82.56%and 87.68%respectively.Red rust alga was not found in one -year-old plants and one-year-old branches.The field tests for the screening of 9 kinds of fungicides showed that 75%Chlorothalonil and 46%Copper hydroxide had better control effects against this alga, and their control effects were respectively 56.79%and 48.47%2 days after spraying, and 100%and 75.19%5 days after the application .However, the mixed application of 46% Copper hydroxide with other fungicides or pesticides easily caused phytotoxicity to the young fruits of lemon .%柠檬红锈藻病( Cephaleuros parasicas Karst)是造成柠檬树未老先衰,柠檬减产的一种枝干病害,在云南省柠檬产区发生普遍,且为害较重。通过不同龄期柠檬植株和枝干对红锈藻病的抗病性调查,结果表明:红锈藻病在柠檬植株定植2~5年发病,以定植3~4年发病最重,发病率均为100%,病情指数分别为72.20%和84.27%;柠檬枝干2~5年生均发病,发病率为100%,以2、3年生枝干病情指数最高,分别为82.56%和87.68%;定植1年植株和1年生枝干均不发病。9种杀菌剂的大田筛选试验表明:75%百菌清和46%氢氧化铜的

  16. Stripe patterns and a projection-valued formulation of the eikonal equation.

    Science.gov (United States)

    Peletier, Mark A; Veneroni, Marco

    2012-04-28

    We describe recent work on striped patterns in a system of block copolymers. A by-product of the characterization of such patterns is a new formulation of the eikonal equation. In this formulation, the unknown is a field of projection matrices of the form P=e⊗e, where e is a unit vector field. We describe how this formulation is better adapted to the description of striped patterns than the classical eikonal equation, and illustrate this with examples.

  17. Method for detecting superconducting stripes in high-temperature superconductors based on nonlinear resistivity measurements.

    Science.gov (United States)

    Muniz, Rodrigo A; Martin, Ivar

    2011-09-16

    We theoretically study the effect that stripelike superconducting inclusions would have on the nonlinear resistivity in single crystals. Even if the stripe orientation varies throughout the sample between two orthogonal directions due to twinning, we predict that there should be a universal dependence of the nonlinear resistivity on the angle between the applied current and the crystal axes. This prediction can be used to test the existence of superconducting stripes at and above the superconducting transition temperature in cuprate superconductors.

  18. Propagation of dark stripe beams in nonlinear media: Snake instability and creation of optical vortices

    DEFF Research Database (Denmark)

    Mamaev, A.V.; Saffman, M.; Zozulya, A.A.

    1996-01-01

    We analyze the evolution of (1+1) dimensional dark stripe beams in bulk media with a photorefractive nonlinear response. These beams, including solitary wave solutions, are shown to be unstable with respect to symmetry breaking and formation of structure along the initially homogeneous coordinate....... Experimental results show the complete sequence of events starting from self-focusing of the stripe, its bending due to the snake instability, and subsequent decay into a set of optical vortices....

  19. Measurement Error Affects Risk Estimates for Recruitment to the Hudson River Stock of Striped Bass

    OpenAIRE

    Dennis J. Dunning; Ross, Quentin E.; Munch, Stephan B.; Ginzburg, Lev R.

    2002-01-01

    We examined the consequences of ignoring the distinction between measurement error and natural variability in an assessment of risk to the Hudson River stock of striped bass posed by entrainment at the Bowline Point, Indian Point, and Roseton power plants. Risk was defined as the probability that recruitment of age-1+ striped bass would decline by 80% or more, relative to the equilibrium value, at least once during the time periods examined (1, 5, 10, and 15 years). Measurement error, estimat...

  20. Saturated genic SNP mapping identified functional candidates and selection tools for the Pinus monticola Cr2 locus controlling resistance to white pine blister rust.

    Science.gov (United States)

    Liu, Jun-Jun; Sniezko, Richard A; Zamany, Arezoo; Williams, Holly; Wang, Ning; Kegley, Angelia; Savin, Douglas P; Chen, Hao; Sturrock, Rona N

    2017-02-07

    Molecular breeding incorporates efficient tools to increase rust resistance in five-needle pines. Susceptibility of native five-needle pines to white pine blister rust (WPBR), caused by the non-native invasive fungus Cronartium ribicola (J.C. Fisch.), has significantly reduced wild populations of these conifers in North America. Major resistance (R) genes against specific avirulent pathotypes have been found in several five-needle pine species. In this study, we screened genic SNP markers by comparative transcriptome and genetic association analyses and constructed saturated linkage maps for the western white pine (Pinus monticola) R locus (Cr2). Phenotypic segregation was measured by a hypersensitive reaction (HR)-like response on the needles and disease symptoms of cankered stems post inoculation by the C. ribicola avcr2 race. SNP genotypes were determined by HRM- and TaqMan-based SNP genotyping. Saturated maps of the Cr2-linkage group (LG) were constructed in three seed families using a total of 34 SNP markers within 21 unique genes. Cr2 was consistently flanked by contig_2142 (encoding a ruvb-like protein) and contig_3772 (encoding a delta-fatty acid desaturase) across the three seed families. Cr2 was anchored to the Pinus consensus LG-1, which differs from LGs where other R loci of Pinus species were mapped. GO annotation identified a set of NBS-LRR and other resistance-related genes as R candidates in the Cr2 region. Association of one nonsynonymous SNP locus of an NBS-LRR gene with Cr2-mediated phenotypes provides a valuable tool for marker-assisted selection (MAS), which will shorten the breeding cycle of resistance screening and aid in the restoration of WPBR-disturbed forest ecosystems.

  1. Short communication: Emergence of a new race of leaf rust with combined virulence to Lr14a and Lr72 genes on durum wheat

    Energy Technology Data Exchange (ETDEWEB)

    Soleiman, N.H; Solis, I.; Soliman, M.H.; Sillero, J.C.; Villegas, D.; Alvaro, F.; Royo, C.; Serra, J.; Ammar, K.; Martínez-Moreno, F.

    2016-11-01

    Leaf rust is a foliar disease caused by the fungus Puccinia triticina that may severely reduce durum wheat yield. Resistance to this pathogen is common in modern durum germplasm but is frequently based on Lr72 and Lr14a. After accounts of races with virulence to Lr14a gene in France in 2000, the present study reports the detection in 2013 for the first time of a new race with virulence to Lr14a and Lr72. The aim of this work was to characterize the virulence pattern of four Spanish isolates with virulence to Lr14a, and to discuss the consequences of this presence. Rusted leaves from cultivars ‘Don Jaime’ (Lr14a) and ‘Gallareta’ (Lr72) were collected in 2013 in the field at two Spanish sites, one in the south (near Cadiz) and another in the north (near Girona). Spores from single pustule for each cultivar and site were multiplied on susceptible cultivar ‘Don Rafael’. Then, the four isolates were inoculated on a set of 19 isogenic lines Thatcher to characterize their virulence spectrum. All isolates presented the same virulence pattern. They were virulent on both Lr14a and Lr72 and the race was named DBB/BS. This race was very similar to those reported in 2009-11, but with added virulence to Lr14a. The resistance based on Lr14a has therefore been overcome in Spain, by a new race that has likely emerged via stepwise mutation from the local predominating races. This information is important to guide breeders in their breeding programmes and gene deployment strategies. (Author)

  2. Stripe order in La2-xBaxCuO4 at ambient and high pressure.

    Science.gov (United States)

    Huecker, M.; Wen, J. S.; Xu, Z. J.; Gu, G. D.; Tranquada, J. M.; Zimmermann, M. V.

    2009-03-01

    The pronounced stability of the charge and spin stripe order in La2-xBaxCuO4 at x=1/8 doping still is a poorly understood peculiarity. A combination of electronic and structural interactions is likely, however it has been difficult to clearly separate the involved mechanisms. One approach is to explore how stripe order fades away for dopings x !=1/8. We have performed high energy (100 keV) x-ray diffraction and static magnetization experiments on single crystals between x=0.095 and 0.155. To our surprise, at ambient pressure stripes exist in a much broader range of doping around x=1/8 than expected. In the underdoped region charge stripe order always coincides with a structural transition associated with a rotation of the octahedral tilt axis. However, for x=1/8 and high pressure we have been able to show that stripe order also occurs in the absence of this structural phase, which motivates us to discuss stripes in terms of an electronic liquid crystal phase.

  3. High-Contrast Color-Stripe Pattern for Rapid Structured-Light Range Imaging

    CERN Document Server

    Je, Changsoo; Park, Rae-Hong

    2015-01-01

    For structured-light range imaging, color stripes can be used for increasing the number of distinguishable light patterns compared to binary BW stripes. Therefore, an appropriate use of color patterns can reduce the number of light projections and range imaging is achievable in single video frame or in "one shot". On the other hand, the reliability and range resolution attainable from color stripes is generally lower than those from multiply projected binary BW patterns since color contrast is affected by object color reflectance and ambient light. This paper presents new methods for selecting stripe colors and designing multiple-stripe patterns for "one-shot" and "two-shot" imaging. We show that maximizing color contrast between the stripes in one-shot imaging reduces the ambiguities resulting from colored object surfaces and limitations in sensor/projector resolution. Two-shot imaging adds an extra video frame and maximizes the color contrast between the first and second video frames to diminish the ambigui...

  4. Applying the Helmholtz Illusion to Fashion: Horizontal Stripes Won't Make You Look Fatter

    Directory of Open Access Journals (Sweden)

    Peter Thompson

    2011-01-01

    Full Text Available A square composed of horizontal lines appears taller and narrower than an identical square made up of vertical lines. Reporting this illusion, Hermann von Helmholtz noted that such illusions, in which filled space seems to be larger than unfilled space, were common in everyday life, adding the observation that ladies' frocks with horizontal stripes make the figure look taller. As this assertion runs counter to modern popular belief, we have investigated whether vertical or horizontal stripes on clothing should make the wearer appear taller or fatter. We find that a rectangle of vertical stripes needs to be extended by 7.1% vertically to match the height of a square of horizontal stripes and that a rectangle of horizontal stripes must be made 4.5% wider than a square of vertical stripes to match its perceived width. This illusion holds when the horizontal or vertical lines are on the dress of a line drawing of a woman. We have examined the claim that these effects apply only for 2-dimensional figures in an experiment with 3-D cylinders and find no support for the notion that horizontal lines would be ‘fattening’ on clothes. Significantly, the illusion persists when the horizontal or vertical lines are on pictures of a real half-body mannequin viewed stereoscopically. All the evidence supports Helmholtz's original assertion.

  5. Applying the Helmholtz illusion to fashion: horizontal stripes won't make you look fatter.

    Science.gov (United States)

    Thompson, Peter; Mikellidou, Kyriaki

    2011-01-01

    A square composed of horizontal lines appears taller and narrower than an identical square made up of vertical lines. Reporting this illusion, Hermann von Helmholtz noted that such illusions, in which filled space seems to be larger than unfilled space, were common in everyday life, adding the observation that ladies' frocks with horizontal stripes make the figure look taller. As this assertion runs counter to modern popular belief, we have investigated whether vertical or horizontal stripes on clothing should make the wearer appear taller or fatter. We find that a rectangle of vertical stripes needs to be extended by 7.1% vertically to match the height of a square of horizontal stripes and that a rectangle of horizontal stripes must be made 4.5% wider than a square of vertical stripes to match its perceived width. This illusion holds when the horizontal or vertical lines are on the dress of a line drawing of a woman. We have examined the claim that these effects apply only for 2-dimensional figures in an experiment with 3-D cylinders and find no support for the notion that horizontal lines would be 'fattening' on clothes. Significantly, the illusion persists when the horizontal or vertical lines are on pictures of a real half-body mannequin viewed stereoscopically. All the evidence supports Helmholtz's original assertion.

  6. Electrochemical formation of green rusts in deaerated seawater-like solutions

    Energy Technology Data Exchange (ETDEWEB)

    Refait, Ph., E-mail: prefait@univ-lr.fr [Laboratoire d' etude des materiaux en milieux agressifs (LEMMA), EA 3167, Universite de La Rochelle, Bat. Marie Curie, Av. Michel Crepeau, F-17 042 La Rochelle Cedex 01 (France); Fed. de Recherche en Environnement et Developpement Durable, FR CNRS 3097 (France); Nguyen, D.D. [Laboratoire d' etude des materiaux en milieux agressifs (LEMMA), EA 3167, Universite de La Rochelle, Bat. Marie Curie, Av. Michel Crepeau, F-17 042 La Rochelle Cedex 01 (France); Hue University' s College of Education, Hue (Viet Nam); Jeannin, M. [Laboratoire d' etude des materiaux en milieux agressifs (LEMMA), EA 3167, Universite de La Rochelle, Bat. Marie Curie, Av. Michel Crepeau, F-17 042 La Rochelle Cedex 01 (France); Fed. de Recherche en Environnement et Developpement Durable, FR CNRS 3097 (France); Sable, S. [Littoral, Environnement et Societe (LiENSs), UMR 6250, CNRS-Univ. La Rochelle, Bat. Marie Curie, Av. Michel Crepeau, F-17 042 La Rochelle Cedex 01 (France); Fed. de Recherche en Environnement et Developpement Durable, FR CNRS 3097 (France); Langumier, M. [Laboratoire d' etude des materiaux en milieux agressifs (LEMMA), EA 3167, Universite de La Rochelle, Bat. Marie Curie, Av. Michel Crepeau, F-17 042 La Rochelle Cedex 01 (France); Littoral, Environnement et Societe (LiENSs), UMR 6250, CNRS-Univ. La Rochelle, Bat. Marie Curie, Av. Michel Crepeau, F-17 042 La Rochelle Cedex 01 (France); Fed. de Recherche en Environnement et Developpement Durable, FR CNRS 3097 (France); Sabot, R. [Laboratoire d' etude des materiaux en milieux agressifs (LEMMA), EA 3167, Universite de La Rochelle, Bat. Marie Curie, Av. Michel Crepeau, F-17 042 La Rochelle Cedex 01 (France); Fed. de Recherche en Environnement et Developpement Durable, FR CNRS 3097 (France)

    2011-07-15

    Highlights: > Sulphated green rust could be electro-generated on carbon steel in anoxic seawater-like electrolytes. > Rust layers grown during 11 years on carbon steel in natural seawater were thoroughly characterised by {mu}-Raman spectroscopy. > The mechanism of marine corrosion of carbon steel in anoxic conditions could be specified. - Abstract: Carbon steel electrodes were polarised at a potential {approx}150 mV higher than the open circuit potential, in a deaerated seawater-like electrolyte (0.5 mol dm{sup -3} NaCl, 0.03 mol dm{sup -3} Na{sub 2}SO{sub 4}, 0.003 mol dm{sup -3} NaHCO{sub 3}). X-ray diffraction and {mu}-Raman analysis demonstrated that a layer mainly composed of GR(SO{sub 4}{sup 2-}) had grown on the steel surface. GR(SO{sub 4}{sup 2-}) was accompanied by traces of GR(CO{sub 3}{sup 2-}). Similar experiments performed in a solution composed of 0.3 mol dm{sup -3} of Na{sub 2}SO{sub 4} and 0.03 mol dm{sup -3} of NaHCO{sub 3} led to the same result. The nature of the GR forming on steel is thus mainly linked to the sulphate to carbonate concentration ratio. Finally, carbon steel coupons immersed for 11 years in the harbour of La Rochelle (Atlantic coast) were removed from seawater for analysis. The inner part of the rust layer proved to be mainly composed of magnetite, GR(SO{sub 4}{sup 2-}) and iron sulphide FeS. This definitively confirms that GR(SO{sub 4}{sup 2-}), as Fe{sub 3}O{sub 4} and FeS, can form from steel in O{sub 2}-depleted environments.

  7. Structural lability of Barley stripe mosaic virus virions.

    Directory of Open Access Journals (Sweden)

    Valentin V Makarov

    Full Text Available Virions of Barley stripe mosaic virus (BSMV were neglected for more than thirty years after their basic properties were determined. In this paper, the physicochemical characteristics of BSMV virions and virion-derived viral capsid protein (CP were analyzed, namely, the absorption and intrinsic fluorescence spectra, circular dichroism spectra, differential scanning calorimetry curves, and size distributions by dynamic laser light scattering. The structural properties of BSMV virions proved to be intermediate between those of Tobacco mosaic virus (TMV, a well-characterized virus with rigid rod-shaped virions, and flexuous filamentous plant viruses. The BSMV virions were found to be considerably more labile than expected from their rod-like morphology and a distant sequence relation of the BSMV and TMV CPs. The circular dichroism spectra of BSMV CP subunits incorporated into the virions, but not subunits of free CP, demonstrated a significant proportion of beta-structure elements, which were proposed to be localized mostly in the protein regions exposed on the virion outer surface. These beta-structure elements likely formed during virion assembly can comprise the N- and C-terminal protein regions unstructured in the non-virion CP and can mediate inter-subunit interactions. Based on computer-assisted structure modeling, a model for BSMV CP subunit structural fold compliant with the available experimental data was proposed.

  8. How to make stripes: deciphering the transition from non-periodic to periodic patterns in Drosophila segmentation.

    Science.gov (United States)

    Schroeder, Mark D; Greer, Christina; Gaul, Ulrike

    2011-07-01

    The generation of metameric body plans is a key process in development. In Drosophila segmentation, periodicity is established rapidly through the complex transcriptional regulation of the pair-rule genes. The 'primary' pair-rule genes generate their 7-stripe expression through stripe-specific cis-regulatory elements controlled by the preceding non-periodic maternal and gap gene patterns, whereas 'secondary' pair-rule genes are thought to rely on 7-stripe elements that read off the already periodic primary pair-rule patterns. Using a combination of computational and experimental approaches, we have conducted a comprehensive systems-level examination of the regulatory architecture underlying pair-rule stripe formation. We find that runt (run), fushi tarazu (ftz) and odd skipped (odd) establish most of their pattern through stripe-specific elements, arguing for a reclassification of ftz and odd as primary pair-rule genes. In the case of run, we observe long-range cis-regulation across multiple intervening genes. The 7-stripe elements of run, ftz and odd are active concurrently with the stripe-specific elements, indicating that maternal/gap-mediated control and pair-rule gene cross-regulation are closely integrated. Stripe-specific elements fall into three distinct classes based on their principal repressive gap factor input; stripe positions along the gap gradients correlate with the strength of predicted input. The prevalence of cis-elements that generate two stripes and their genomic organization suggest that single-stripe elements arose by splitting and subfunctionalization of ancestral dual-stripe elements. Overall, our study provides a greatly improved understanding of how periodic patterns are established in the Drosophila embryo.

  9. In vivo evidence of functional and anatomical stripe-based subdivisions in human V2 and V3.

    Science.gov (United States)

    Dumoulin, Serge O; Harvey, Ben M; Fracasso, Alessio; Zuiderbaan, Wietske; Luijten, Peter R; Wandell, Brian A; Petridou, Natalia

    2017-04-07

    Visual cortex contains a hierarchy of visual areas. The earliest cortical area (V1) contains neurons responding to colour, form and motion. Later areas specialize on processing of specific features. The second visual area (V2) in non-human primates contains a stripe-based anatomical organization, initially defined using cytochrome-oxidase staining of post-mortem tissue. Neurons in these stripes have been proposed to serve distinct functional specializations, e.g. processing of color, form and motion. These stripes represent an intermediate stage in visual hierarchy and serve a key role in the increasing functional specialization of visual areas. Using sub-millimeter high-field functional and anatomical MRI (7T), we provide in vivo evidence for stripe-based subdivisions in humans. Using functional MRI, we contrasted responses elicited by stimuli alternating at slow and fast temporal frequencies. We revealed stripe-based subdivisions in V2 ending at the V1/V2 border. The human stripes reach into V3. Using anatomical MRI optimized for myelin contrast within gray matter, we also observe a stripe pattern. Stripe subdivisions preferentially responding to fast temporal frequencies are more myelinated. As such, functional and anatomical measures provide independent and converging evidence for functional organization into striped-based subdivisions in human V2 and V3.

  10. Phonon anomalies and critical fluctuations associated with charge stripes in La1.67Sr0.33NiO4

    Science.gov (United States)

    Anisimova, Svetlana; Parshall, Dan; Reznik, Dmitry; Lamago, Daniel; Abernathy, Douglas; Marty, Karol; Lumsden, Mark; Gu, G.; Tranquada, J. M.

    2012-02-01

    We will report inelastic neutron scattering measurements of the spectrum of charge excitations in the stripe-ordered phase of La2-xSrxNiO4 (x = 13 ). We identified clear signature of charge stripes at low energies in the nickelates. Our results imply that dynamic stripes are critical fluctuations associated with the stripe-ordering transition. We also observed a phonon anomaly correlated with dynamic stripes above the static-ordering transition, which occurs at 241 K. Our results elucidate the nature of dynamic charge stripes and their signature in the neutron spectra.

  11. Urediospores of Puccinia spp. and other rusts are warm-temperature ice nucleators and harbor ice nucleation active bacteria

    Directory of Open Access Journals (Sweden)

    A. R. Moukahel

    2012-10-01

    Full Text Available In light of various features of the biology of the rust fungi and of the epidemiology of the plant diseases they cause that illustrate the important role of rainfall in their life history, we have characterized the ice nucleation activity (INA of the aerially disseminated spores (urediospores of this group of fungi. Urediospores of this obligate plant parasite were collected from natural infections from 7 species of weeds in France, from coffee in Brazil and from field and greenhouse-grown wheat in France, the USA, Turkey and Syria. Immersion freezing was used to determine freezing onset temperatures and the abundance of ice nuclei in suspensions of washed spores. Microbiological analyses of spores and subsequent tests of the ice nucleation activity of the bacteria associated with spores were deployed to quantify the contribution of bacteria to the ice nucleation activity of the spores. All samples of spores were ice nucleation active having freezing onset temperatures as warm as −4 °C. Spores in most of the samples carried cells of ice nucleation-active strains of the bacterium Pseudomonas syringae (at rates of less than 1 bacterial cell per 100 urediospores, but bacterial INA accounted for only a small fraction of the INA observed in spore suspensions. Changes in the INA of spore suspensions after treatment with lysozyme suggest that the INA of urediospores involves a polysaccharide. Based on data from the literature, we have estimated the concentrations of urediospores in air at cloud height and in rainfall. These quantities are very similar to those reported for other biological ice nucleators in these same substrates. We suggest that air sampling techniques have ignored the spatial and temporal variability of atmospheric concentrations that occur under conditions propitious for precipitation that could increase their local abundance intermittently. Nevertheless, we propose that the relative low abundance of warm-temperature biological

  12. Urediospores of Puccinia spp. and other rusts are warm-temperature ice nucleators and harbor ice nucleation active bacteria

    Science.gov (United States)

    Morris, C. E.; Sands, D. C.; Glaux, C.; Samsatly, J.; Asaad, S.; Moukahel, A. R.; Gonçalves, F. L. T.; Bigg, E. K.

    2012-10-01

    In light of various features of the biology of the rust fungi and of the epidemiology of the plant diseases they cause that illustrate the important role of rainfall in their life history, we have characterized the ice nucleation activity (INA) of the aerially disseminated spores (urediospores) of this group of fungi. Urediospores of this obligate plant parasite were collected from natural infections from 7 species of weeds in France, from coffee in Brazil and from field and greenhouse-grown wheat in France, the USA, Turkey and Syria. Immersion freezing was used to determine freezing onset temperatures and the abundance of ice nuclei in suspensions of washed spores. Microbiological analyses of spores and subsequent tests of the ice nucleation activity of the bacteria associated with spores were deployed to quantify the contribution of bacteria to the ice nucleation activity of the spores. All samples of spores were ice nucleation active having freezing onset temperatures as warm as -4 °C. Spores in most of the samples carried cells of ice nucleation-active strains of the bacterium Pseudomonas syringae (at rates of less than 1 bacterial cell per 100 urediospores), but bacterial INA accounted for only a small fraction of the INA observed in spore suspensions. Changes in the INA of spore suspensions after treatment with lysozyme suggest that the INA of urediospores involves a polysaccharide. Based on data from the literature, we have estimated the concentrations of urediospores in air at cloud height and in rainfall. These quantities are very similar to those reported for other biological ice nucleators in these same substrates. We suggest that air sampling techniques have ignored the spatial and temporal variability of atmospheric concentrations that occur under conditions propitious for precipitation that could increase their local abundance intermittently. Nevertheless, we propose that the relative low abundance of warm-temperature biological ice nucleators in the

  13. Study on Properties of Two Kinds of Rust-Converting Primers%2种铁锈转化底漆的性能研究

    Institute of Scientific and Technical Information of China (English)

    杨万国; 丁国清; 杨海洋; 沈耀辉

    2011-01-01

    RUST DESTROYER and RUST KNOCK OUT are rust-converting paint primers, produced by U.S. advanced protective products company. Both of them can be applied directly over rusted or partially rusted surfaces without cleaning the surface to bare metal. They can convert active rust to a passive form on contact. An absorbing action in the paint film simultaneously raises the rust from the surface and envelopes all converted crystals in the primer, eliminating exposure to oxygen and moisture preventing further rusting. Many mechanical properties of the two rust-converting paint primers are excellent, they can be used for a variety of metal substrates and provide superior adhension, and can be top coated with many kinds top coats.%RUSTDESTROYER和RUSTKNOCKOUT是由美国先进防护品公司生产的2种铁锈转化底漆,这2种底漆均可直接用于生锈或部分生锈的金属表面,不需要打磨出裸露的金属表面。涂装后可以将活性铁锈钝化并将其包裹,阻止活性铁锈与空气和水分接触,防止金属的进一步腐蚀。这2种铁锈转化底漆的多项机械性能优良,可用于多种金属底材,附着力良好,与多种类型面漆兼容性好。

  14. A comparative study of nitrite reduction by synthetic and biogenic Fe(II-III) hydroxysalts green rusts: Evidence for hydroxyl-nitrite green rust formation as an intermediate reaction product.

    Science.gov (United States)

    Ona-Nguema, G.; Guerbois, D.; Morin, G.; Zhang, Y.; Noel, V.; Brest, J.

    2013-12-01

    The occurrence of high nitrite concentrations as a result of anthropogenic activities is an important water quality concern as it is highly toxic to human and fauna, and it is used as a nitrogen source for the assimilation process. The toxicity of nitrite is related to its transformation into carcinogenic N-nitroso compounds, which are suspected to be responsible for some gastric cancers, and to its ability to convert the hemoglobin to methaemoglobin what is then unable to fix oxygen and to transport it to the tissues, involving hypoxia and the blue-baby syndrome [1]. To reduce the adverse effect of nitrite on human health and on macroalgal blooms, any process enhancing the transformation of nitrite ions to nitrogen gas is of interest for the remediation of natural environments. To achieve this purpose the use of processes involving Fe(II)-containing minerals could be considered as one of the best options. Green-rusts are mixed Fe(II-III) layered double hydroxides commonly found in anoxic zones of natural environments such as sediments and hydromorphic soils. In such anoxic environments, green rust minerals play an important role in the biogeochemical redox cycling of iron and nitrogen, and can affect the speciation and mobility of many organic and inorganic contaminants. The present study investigates the reduction of nitrite by two synthetic and two biogenic green rusts. On the one hand, Fe(II-III) hydroxychloride and Fe(II-III) hydroxycarbonate green rusts were used as synthetic interlayer forms of GR, which are referred to as ';syn-GR(CO3)' and ';syn-GR(Cl)', respectively. On the other hand, the study was performed with biogenic Fe(II-III) hydroxycarbonate green rusts obtained from the bioreduction of two ferric precursors, either Fe(III)-oxyhydroxycarbonate or lepidocrocite; these biogenic green rusts are referred to as ';bio-GR(CO3)F' and ';bio-GR(CO3)L', respectively. For synthetic green rusts, results showed that the oxidation of both syn-GR(CO3) and syn

  15. Carbonated ferric green rust as a new material for efficient phosphate removal.

    Science.gov (United States)

    Barthélémy, K; Naille, S; Despas, C; Ruby, C; Mallet, M

    2012-10-15

    Phosphate uptake from aqueous solutions by a recently discovered ferric oxyhydroxide is investigated. Carbonated ferric green rust {GR(CO(3)(2-))*} is prepared by varying two synthesis parameters, which are (1) the aging period after the ferrous-ferric green rust {GR(CO(3)(2-))} synthesis step and (2) the rate of the hydrogen peroxide addition to oxidize GR(CO(3)(2-)) into GR(CO(3)(2-))*. These two parameters permit the control of the size, morphology and cristallinity of the synthesized particles. As prepared GR* samples are then evaluated, in batch experiments, as possible low-cost efficient phosphate removal materials. Firstly, kinetic experiments reveal that a fast sorption step initially occurs and equilibrium is reached at ~500 min. The adsorption kinetics data at pH=7 can be adequately fitted to a pseudo-second order model. Secondly, the Freundlich model provides the best correlation and effectively describes phosphate sorption isotherms for all GR(CO(3)(2-))* samples synthesized. Finally, the phosphate adsorption capacity decreases when pH increases. The highest adsorption capacity is 64.8 mg g(-1) at pH=4 and corresponds to the GR(CO(3)(2-))* sample displaying the smallest and least crystallized particles thus reflecting the importance of the synthesis conditions. Overall, all sorption capacities are higher than the main iron oxide minerals, making GR(CO(3)(2-))* a potentially attractive phosphate adsorbent.

  16. Switchable Ionic Liquids: An Environmentally Friendly Medium to Synthesise Nanoparticulate Green Rust

    Energy Technology Data Exchange (ETDEWEB)

    Lao, David; Kukkadapu, Ravi; Kovarik, Libor; Arey, Bruce; Heldebrant, David; Nune, Satish

    2016-06-27

    Under anoxic conditions, a novel nanoparticulate green rust with carbonate (nano GR) was synthesized by addition of methanol to degassed switchable ionic liquid (SWIL) solution comprised of 1-hexanol, diazabicycloundec-7-ene (DBU), CO2 and Fe(C2H3O2)2 (Fe(OAc)2). Variable temperature Mössbauer spectroscopy studies indicated the product to be predominantly GR while TEM-SAED method confirmed it be nanoparticulate in nature. Experiments with and without methanol in the SWIL medium suggest that methanol may be responsible for Fe(II) oxidation to Fe(III) necessary for GR formation. Studies with Ar instead of CO2 trigger gas indicated that CO2 is essential for GR formation. Conditions to generate CO32- anion was most likely provided by basic environment of the medium. The nano GR suspension was very reactive and instantaneously oxidized completely to a reddish-brown precipitate upon exposure to ambient atmosphere. The nature of the oxidized sample is not certain. The oxidized product, however, appears to be a mix of ferric green rust- [GR(CO32-]*; major] and ferrihydrite-like minerals. To our knowledge, this is first report of use of environmentally-friendly SWIL reagents to synthesize very reactive nano GR materials.

  17. Sources of Partial Resistance to Leaf Rust in Hard Wheat Landraces Cultivated in Palestine

    Directory of Open Access Journals (Sweden)

    Munqez Jamil Yacoub SHTAYA

    2014-02-01

    Full Text Available A collection of 7 landraces of Palestinian durum wheat was screened for resistance to leaf rust (Puccinia triticina under controlled conditions. Latent period was more pronounced in adult plants than in seedlings and within adult plants the latency period was higher in flag leaf. In sixth leaf stage, all lines except White Dibeyah had a relative latency period greater than Meridiano and similar to Akabozu. Black Dibeyah had a latency period superior to Akabozu (partially resistant check. Black Dibeyah, Kahatat and Akabozu had a higher percentage of early abortion without host cell abortions (EA- than the susceptible control in seedling stage. In the sixth leaf stage, only line Black Dibeyah had a higher % EA- than the rest. In flag leaf stage lines, Black Hiteyah, Yellow Hiteyah, Black Dibeyah, Kahatat and Akabozu had a higher percentage of early aborted colonies than Meridiano. These lines may be useful additional sources of partial resistance to leaf rust and they might be used in breeding programs.

  18. The effect of environmental hypercapnia and size on nitrite toxicity in the striped catfish (Pangasianodon hypophthalmus).

    Science.gov (United States)

    Hvas, Malthe; Damsgaard, Christian; Gam, Le Thi Hong; Huong, Do Thi Thanh; Jensen, Frank B; Bayley, Mark

    2016-07-01

    Striped catfish (Pangasianodon hypophthalmus) are farmed intensively at high stocking densities in Vietnam where they are likely to encounter environmental hypercapnia as well as occasional high levels of aquatic nitrite. Nitrite competes with Cl(-) for uptake at the branchial HCO3(-)/Cl(-) exchanger, causing a drastic reduction in the blood oxygen carrying capacity through the formation of methaemoglobin and nitrosylhaemoglobin. Environmental hypercapnia induces a respiratory acidosis where the branchial HCO3(-)/Cl(-) exchange activity is reduced in order to retain HCO3(-) for pH recovery, which should lead to a reduced nitrite uptake. To assess the effect of hypercapnia on nitrite uptake, fish were cannulated in the dorsal aorta, allowing repeated blood sampling for measurements of haemoglobin derivatives, plasma ions and acid-base status during exposure to 0.9mM nitrite alone and in combination with acute and 48h acclimated hypercapnia over a period of 72h. Nitrite uptake was initially reduced during the hypercapnia-induced acidosis, but after pH recovery the situation was reversed, resulting in higher plasma nitrite concentrations and lower functional haemoglobin levels that eventually caused mortality. This suggests that branchial HCO3(-)/Cl(-) exchange activity is reduced only during the initial acid-base compensation, but subsequently increases with the greater availability of internal HCO3(-) counter-ions as pH is compensated. The data further suggest that branchial Na(+)/H(+) exchange plays a significant role in the initial phase of acid-base compensation. Overall, longer term environmental hypercapnia does not protect against nitrite uptake in P. hypophthalmus, but instead enhances it. In addition, we observed a significant size effect in nitrite accumulation, where large fish attained plasma [nitrite] above the ambient concentration, while small fish did not. Small P. hypophthalmus instead had significantly higher plasma [nitrate], and haemoglobin

  19. Influence of foliar copper and nickel applications on sugarcane yields in brown rust infested fields in Louisiana

    Science.gov (United States)

    Sugarcane fields with severe brown rust infections have been documented to show a decrease in sugar per hectare yields of up to 1680 kg/ha ($170/ha). Currently, control of this disease is accomplished with multiple fungicide applications. This is a costly practice for sugarcane producers who are alr...

  20. Isolate specificity and polygenic inheritance of resistance in barley to the heterologous rust pathogen Puccinia graminis f. sp. avenae

    NARCIS (Netherlands)

    Dracatos, P.M.; Nansamba, M.; Berlin, A.; Park, R.F.; Niks, R.E.

    2016-01-01

    Barley is a near-nonhost to numerous heterologous (nonadapted) rust pathogens because a small proportion of genotypes are somewhat susceptible. We assessed 66 barley accessions and three mapping populations (Vada x SusPtrit, Cebada Capa x SusPtrit, and SusPtrit x Golden Promise) for response to t

  1. Rust infection and survival of 49 Pinus monticola families at a field site six years after planting

    Directory of Open Access Journals (Sweden)

    S.E. Kolpak

    2013-12-01

    Full Text Available This field trial evaluates white pine blister rust resistance of 49 families of Pinus monticola from Oregon and Washington. The Optical site had 93% of the trees infected six years after planting, but rust mortality is currently low. Families ranged between 31 to 100 percent infected and the number of stem symptoms ranged between three and eighteen. Families with R-gene resistance (HR from the Cr2 gene were highly susceptible at Optical due to the presence of a virulent race of rust (vcr2. Families without Cr2 and with moderate to high frequencies of canker-free or bark reaction ('Q' families in seedling screening at Dorena Genetic Resource Center (DGRC were the most resistant at Optical with higher bark reaction and lower percent infection, mortality, and number of stem symptoms. Another subset of the families were inoculated in a seedling trial at DGRC using rust strains not containing vcr2. The Cr2 families had predictable levels of resistance and Q families also showed moderate levels of resistance in the DGRC seedling trial. Percent stem symptom and bark reaction traits were positively correlated between screening and field trials. Also the number of needle lesions in artificial screening was positively correlated with the number of stem symptoms at Optical.

  2. Rust infection and survival of 49 Pinus monticola families at a field site six years after planting

    Directory of Open Access Journals (Sweden)

    S.E. Kolpak

    2008-09-01

    Full Text Available This field trial evaluates white pine blister rust resistance of 49 families of Pinus monticola from Oregon and Washington. The Optical site had 93% of the trees infected six years after planting, but rust mortality is currently low. Families ranged between 31 to 100 percent infected and the number of stem symptoms ranged between three and eighteen. Families with R-gene resistance (HR from the Cr2 genewere highly susceptible at Optical due to the presence of a virulent race of rust (vcr2.Families without Cr2 and with moderate to high frequencies of canker-free or bark reaction ('Q' families in seedling screening at Dorena Genetic Resource Center(DGRC were the most resistant at Optical with higher bark reaction and lower percent infection, mortality, and number of stem symptoms. Another subset of thefamilies were inoculated in a seedling trial at DGRC using rust strains not containing vcr2. The Cr2 families had predictable levels of resistance and Q families also showed moderate levels of resistance in the DGRC seedling trial. Percent stem symptomand bark reaction traits were positively correlated between screening and field trials. Also the number of needle lesions in artificial screening was positively correlated with the number of stem symptoms at Optical.

  3. On the bubble? With healthcare job growth outstripping population in aging Rust Belt cities, some question the trend's durability.

    Science.gov (United States)

    Carlson, Joe; Kutscher, Beth

    2013-03-01

    Aging Rust Belt cities are some of the leaders in healthcare job growth despite stagnant or decreasing populations, even amid mounting pressure to cut healthcare costs. Areas seeing rapid population growth aren't as dependent on healthcare. "Cities that are growing quickly are most likely adding diversified industries," says Dr. Sheldon Retchin, of the Virginia Commonwealth University Health System.

  4. Transport properties of stripe-ordered high T{sub c} cuprates

    Energy Technology Data Exchange (ETDEWEB)

    Jie Qing; Han Sujung; Dimitrov, Ivo [Condensed Matter Physics and Materials Science Dept., Brookhaven National Laboratory, Upton, NY 11973-5000 (United States); Tranquada, J.M., E-mail: jtran@bnl.gov [Condensed Matter Physics and Materials Science Dept., Brookhaven National Laboratory, Upton, NY 11973-5000 (United States); Li Qiang, E-mail: qiangli@bnl.gov [Condensed Matter Physics and Materials Science Dept., Brookhaven National Laboratory, Upton, NY 11973-5000 (United States)

    2012-11-01

    Transport measurements provide important characterizations of the nature of stripe order in the cuprates. Initial studies of systems such as La{sub 1.6-x}Nd{sub 0.4}Sr{sub x}CuO{sub 4} demonstrated the strong anisotropy between in-plane and c-axis resistivities, but also suggested that stripe order results in a tendency towards insulating behavior within the planes at low temperature. More recent work on La{sub 2-x}Ba{sub x}CuO{sub 4} with x = 1/8 has revealed the occurrence of quasi-two-dimensional superconductivity that onsets with spin-stripe order. The suppression of three-dimensional superconductivity indicates a frustration of the interlayer Josephson coupling, motivating a proposal that superconductivity and stripe order are intertwined in a pair-density-wave state. Complementary characterizations of the low-energy states near the Fermi level are provided by measurements of the Hall and Nernst effects, each revealing intriguing signatures of stripe correlations and ordering. We review and discuss this work.

  5. Transport properties of stripe-ordered high Tc cuprates

    Energy Technology Data Exchange (ETDEWEB)

    Jie, Qing [Brookhaven National Lab. (BNL), Upton, NY (United States); Han, Su Jung [Brookhaven National Lab. (BNL), Upton, NY (United States); Dimitrov, Ivo [Brookhaven National Lab. (BNL), Upton, NY (United States); Tranquada, J. M. [Brookhaven National Lab. (BNL), Upton, NY (United States); Li, Qiang [Brookhaven National Lab. (BNL), Upton, NY (United States)

    2012-04-13

    Transport measurements provide important characterizations of the nature of stripe order in the cuprates. Initial studies of systems such as La1.6-xNd0.4SrxCuO₄ demonstrated the strong anisotropy between in-plane and c-axis resistivities, but also suggested that stripe order results in a tendency towards insulating behavior within the planes at low temperature. More recent work on La2-xBaxCuO₄ with x = 1/8 has revealed the occurrence of quasi-two-dimensional superconductivity that onsets with spin-stripe order. The suppression of three-dimensional superconductivity indicates a frustration of the interlayer Josephson coupling, motivating a proposal that superconductivity and stripe order are intertwined in a pair-density-wave state. Complementary characterizations of the low-energy states near the Fermi level are provided by measurements of the Hall and Nernst effects, each revealing intriguing signatures of stripe correlations and ordering. We review and discuss this work.

  6. Seasonal use of a New England estuary by foraging contingents of migratory striped bass

    Science.gov (United States)

    Mather, Martha E.; Pautzke, Sarah M.; Finn, John T.; Deegan, Linda A.; Muth, Robert M.

    2011-01-01

    Using acoustic telemetry on migratory striped bass Morone saxatilis in Plum Island Estuary (PIE), Massachusetts, we found that striped bass (335–634 mm total length) tagged in the spring and summer of 2005 (n = 14) and 2006 (n = 46) stayed in the estuary for an average of 66.0 d in 2005 and 72.2 d in 2006. Striped bass spent the most time in two specific reaches: middle Plum Island Sound and lower Rowley River. In both years, three different use-groups of striped bass were observed in PIE. Short-term visitors (n = 24) stayed in the estuary only briefly (range = 5–20 d). Two groups of seasonal residents stayed for more than 30 d, either in the Rowley River (n = 14) or in Plum Island Sound (n = 22). Within PIE, the two seasonal-resident use-groups may be foraging contingents that learn how to feed efficiently in specific parts of the estuary. These distinct within-estuary use patterns could have different implications for striped bass condition and prey impact.

  7. Quantum magnetic excitations from stripes in copper-oxide superconductors

    Science.gov (United States)

    Tranquada, John

    2005-03-01

    Recent inelastic neutron scattering studies show that the magnetic excitation spectra of two well-studied families of cuprate superconductors are much more similar than previously believed. In particular, I will present results we have obtained on La2-xBaxCuO4 (LBCO) with x = 0.125 [1,2]. Using very large single crystals grown at Brookhaven, we were able to measure the magnetic excitations up to 200 meV using the MAPS time-of-flight spectrometer at the ISIS spallation source. While the lowest energy excitations are split incommensurately, these disperse inwards towards the antiferromagnetic wave vector with increasing energy, merging at ˜50 meV. At higher energies the excitations disperse outwards again. There is a significant enhancement of the Q-integrated magnetic scattering near ˜50 meV compared to lower energies, suggestive of quantum correlations and distinct from spin-wave predictions. Many features of the spectrum are quite similar to those found in YBa2Cu3O6.6 [3]. One can qualitatively characterize the results with a universal excitation spectrum, together with a material-dependent spin gap in the superconducting state. It is important to note that the LBCO sample exhibits static stripe order [2], as this has significant implications for the origin of the magnetic excitations in superconducting cuprates. *J. M. Tranquada, H. Woo, T. G. Perring, H. Goka, G. D. Gu, G. Xu, M. Fujita, and K. Yamada, Nature 429, 534 (2004). *M. Fujita, H. Goka, K. Yamada, J. M. Tranquada, and L.-P. Regnault, Phys. Rev. B 70, 104517 (2004). *S. M. Hayden, H. A. Mook, P. C. Dai, T. G. Perring, and F. Dogan, Nature 429, 531 (2004).

  8. THE z = 5 QUASAR LUMINOSITY FUNCTION FROM SDSS STRIPE 82

    Energy Technology Data Exchange (ETDEWEB)

    McGreer, Ian D.; Fan Xiaohui [Steward Observatory, University of Arizona, 933 North Cherry Avenue, Tucson, AZ 85721-0065 (United States); Jiang Linhua [School of Earth and Space Exploration, Arizona State University, Tempe, AZ 85287 (United States); Richards, Gordon T. [Department of Physics, Drexel University, 3141 Chestnut Street, Philadelphia, PA 19104 (United States); Strauss, Michael A. [Department of Astrophysical Sciences, Princeton University, Princeton, NJ 08544 (United States); Ross, Nicholas P.; White, Martin [Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 92420 (United States); Shen Yue [Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, MA 02138 (United States); Schneider, Donald P.; Brandt, W. Niel [Department of Astronomy and Astrophysics, Pennsylvania State University, 525 Davey Laboratory, University Park, PA 16802 (United States); Myers, Adam D. [Department of Physics and Astronomy, University of Wyoming, Laramie, WY 82071 (United States); DeGraf, Colin [McWilliams Center for Cosmology, Carnegie Mellon University, 5000 Forbes Avenue, Pittsburgh, PA 15213 (United States); Glikman, Eilat [Department of Physics and Yale Center for Astronomy and Astrophysics, Yale University, P.O. Box 208121, New Haven, CT 06520-8121 (United States); Ge Jian [Department of Astronomy, University of Florida, 211 Bryant Space Science Center, Gainesville, FL 32611 (United States); Streblyanska, Alina, E-mail: imcgreer@as.arizona.edu [Instituto de Astrofisica de Canarias (IAC), E-38200 La Laguna, Tenerife (Spain)

    2013-05-10

    We present a measurement of the Type I quasar luminosity function at z = 5 using a large sample of spectroscopically confirmed quasars selected from optical imaging data. We measure the bright end (M{sub 1450} < -26) with Sloan Digital Sky Survey (SDSS) data covering {approx}6000 deg{sup 2}, then extend to lower luminosities (M{sub 1450} < -24) with newly discovered, faint z {approx} 5 quasars selected from 235 deg{sup 2} of deep, coadded imaging in the SDSS Stripe 82 region (the celestial equator in the Southern Galactic Cap). The faint sample includes 14 quasars with spectra obtained as ancillary science targets in the SDSS-III Baryon Oscillation Spectroscopic Survey, and 59 quasars observed at the MMT and Magellan telescopes. We construct a well-defined sample of 4.7 < z < 5.1 quasars that is highly complete, with 73 spectroscopic identifications out of 92 candidates. Our color selection method is also highly efficient: of the 73 spectra obtained, 71 are high-redshift quasars. These observations reach below the break in the luminosity function (M{sub 1450}{sup *}{approx}-27). The bright-end slope is steep ({beta} {approx}< -4), with a constraint of {beta} < -3.1 at 95% confidence. The break luminosity appears to evolve strongly at high redshift, providing an explanation for the flattening of the bright-end slope reported previously. We find a factor of {approx}2 greater decrease in the number density of luminous quasars (M{sub 1450} < -26) from z = 5 to z = 6 than from z = 4 to z = 5, suggesting a more rapid decline in quasar activity at high redshift than found in previous surveys. Our model for the quasar luminosity function predicts that quasars generate {approx}30% of the ionizing photons required to keep hydrogen in the universe ionized at z = 5.

  9. Selection of reference genes for quantitative RT-PCR studies in striped dolphin (Stenella coeruleoalba skin biopsies

    Directory of Open Access Journals (Sweden)

    Casini Silvia

    2006-09-01

    Full Text Available Abstract Background Odontocete cetaceans occupy the top position of the marine food-web and are particularly sensitive to the bioaccumulation of lipophilic contaminants. The effects of environmental pollution on these species are highly debated and various ecotoxicological studies have addressed the impact of xenobiotic compounds on marine mammals, raising conservational concerns. Despite its sensitivity, quantitative real-time PCR (qRT-PCR has never been used to quantify gene induction caused by exposure of cetaceans to contaminants. A limitation for the application of qRT-PCR is the need for appropriate reference genes which allow the correct quantification of gene expression. A systematic evaluation of potential reference genes in cetacean skin biopsies is presented, in order to validate future qRT-PCR studies aiming at using the expression of selected genes as non-lethal biomarkers. Results Ten commonly used housekeeping genes (HKGs were partially sequenced in the striped dolphin (Stenella coeruleoalba and, for each gene, PCR primer pairs were specifically designed and tested in qRT-PCR assays. The expression of these potential control genes was examined in 30 striped dolphin skin biopsy samples, obtained from specimens sampled in the north-western Mediterranean Sea. The stability of selected control genes was determined using three different specific VBA applets (geNorm, NormFinder and BestKeeper which produce highly comparable results. Glyceraldehyde-3P-dehydrogenase (GAPDH and tyrosine 3-monooxygenase (YWHAZ always rank as the two most stably expressed HKGs according to the analysis with geNorm and Normfinder, and are defined as optimal control genes by BestKepeer. Ribosomal protein L4 (RPL4 and S18 (RPS18 also exhibit a remarkable stability of their expression levels. On the other hand, transferrin receptor (TFRC, phosphoglycerate kinase 1 (PGK1, hypoxanthine ribosyltransferase (HPRT1 and β-2-microglobin (B2M show variable expression

  10. A stripe noise removal method for the video surveillance image%一种视频监控图像条纹噪声去除算法

    Institute of Scientific and Technical Information of China (English)

    武楠; 王珩

    2012-01-01

    针对视频图像中图像传感器故障引起的等间距横纹噪声去除问题。提出了基于陷波滤波器的去除条纹噪声算法;首先将视频条纹图进行傅里叶变换,通过频域累积分布函数映射法构造自适应滤波器,用该滤波器对变换后的条纹图像进行滤波,最后用Laplacian算子进行锐化处理得到最终去噪声图像。实验结果表明,本算法适合用于去除有图像传感器故障引起的等间距横纹噪声。%For the evenly spaced horizontal noise removal problem caused by image sensor fault in video images, we propose a stripes noise removal algorithm based on depression wave filter. First of all, we make Fourier transformation for video stripe images, and construct an adaptation filter based on depression filter through cumulative distribution function map method in frequency domain. Then we make the inverse Fourier transformation for the filtered video stripe images and get the restoration image. Finally, we sharpened the restoration image using Laplacian operator and overlay it to the restoration image, then we get the final noise removal image. Experimental results show that, the proposed algorithm is suitable for spaced horizontal noise removal caused by the image sensor fault.

  11. Surface Scattering Effect and the Stripe Order in Films of the Superfluid 3He B Phase

    Science.gov (United States)

    Aoyama, Kazushi

    2016-09-01

    Surface scattering effects in thin films of the superfluid 3He B phase have been theoretically investigated, with an emphasis on the stability of the stripe order with spontaneous broken translational symmetry in the film plane and quasiparticle excitations in this spatially inhomogeneous phase. Based on the Ginzburg-Landau theory in the weak coupling limit, we have shown that the stripe order, which was originally discussed for a film with two specular surfaces, can be stable in a film with one specular and one diffusive surfaces which should correspond to superfluid 3He on a substrate. It is also found by numerically solving the Eilenberger equation that due to the stripe structure, a midgap state distinct from the surface Andreev bound state emerges and its signature is reflected in the local density of states.

  12. Stripe order in La2-xBaxCuO4 in high magnetic fields

    Science.gov (United States)

    Huecker, M.; von Zimmermann, M.; Xu, Z. J.; Wen, J. S.; Gu, G. D.; Zaliznyak, I. A.; Chung, J.-H.; Choi, E. S.; Tranquada, J. M.

    2012-02-01

    The observation of enhanced spin stripe order in the vortex cores of La2-xSrxCuO4 has been a landmark experiment that revealed the intimate connection between superconductivity and incommensurate antiferromagnetism. Only recently we have observed a corresponding field dependence of the spin and, more importantly, of the charge stripe order in La2-xBaxCuO4. Here we present our recent results from neutron diffraction, x-ray diffraction, and torque measurements in high magnetic fields. These helped us to establish the field versus temperature and doping phase diagrams for spin and charge order, and to further corroborate the stripe model as the more appropriate description than for example spiral and vortex states.

  13. Stripe correlations in La 1.875Ba 0.125CuO 4

    Science.gov (United States)

    Fujita, M.; Goka, H.; Tranquada, J. M.; Yamada, K.

    2004-08-01

    We have performed neutron scattering measurements on the single crystal of La 1.875Ba 0.125CuO 4 in order to study the melting sequence of stripe correlations. Low-energy incommensurate spin fluctuations clearly are observed around (π,π) at low temperatures and remain even above the stripe ordering temperature of 50 K. However, the peak intensity dramatically degrades toward the structural transition temperature between low-temperature tetragonal and low-temperature orthorhombic phases, Td2, of 60 K. No well-defined signal was observed above Td2. These results suggest that the charge fluctuations, which are closely related with the crystal structure, modify the magnetic correlations as expected from the stripe model.

  14. Crossover to striped magnetic domains in Fe1-xGax magnetostrictive thin films

    Science.gov (United States)

    Barturen, M.; Rache Salles, B.; Schio, P.; Milano, J.; Butera, A.; Bustingorry, S.; Ramos, C.; de Oliveira, A. J. A.; Eddrief, M.; Lacaze, E.; Gendron, F.; Etgens, V. H.; Marangolo, M.

    2012-08-01

    We have studied the magnetic properties at room temperature of Fe1-xGax (FeGa) epitaxial thin films grown on ZnSe/GaAs(100) for 0.14≤x≤0.29 range concentration, and film thicknesses, d = 36 and 72 nm. The study was performed by means of magnetometric measurements and magnetic force microscopy scans. Increasing x promotes the loss of the four-fold magnetic-crystalline anisotropy associated to an Fe-like behavior, which is lost completely above x = 0.20. Stripe domains with rotatable anisotropy are observed even in samples in which the theoretical conditions for stripe appearance are not completely fulfilled. An unexpected "saw-tooth" stripe structure has been found under certain conditions.

  15. Pseudospin solitons in the coherent stripe phase of a bilayer quantum Hall system

    Science.gov (United States)

    Doiron, C. B.; Côté, R.; Fertig, H. A.

    2006-08-01

    In the Hartree-Fock approximation and at total filling factor ν=4N+1, the ground state of the two-dimensional electron gas in a double quantum well system in a quantizing magnetic field is, in some range of interlayer distances, a coherent striped phase. This stripe phase has one-dimensional coherent channels that support charged excitations in the form of pseudospin solitons. In this work, we compute the transport gap of the coherent striped phase due to the creation of soliton-antisoliton pairs using a supercell microscopic unrestricted Hartree-Fock approach. We study the energy gap as a function of interlayer distance and tunneling amplitude. Our calculations confirm that the soliton-antisoliton excitation energy is lower than the corresponding Hartree-Fock electron-hole pair energy.

  16. Zero-bias-field microwave dynamic magnetic properties in trapezoidal ferromagnetic stripe

    Science.gov (United States)

    Bi, Mei; Wang, Xin; Lu, Haipeng; Zhang, Li; Deng, Longjiang; Xie, Jianliang

    2016-06-01

    Dynamic magnetization response of the axially magnetized ferromagnetic stripe with trapezoidal cross section has been studied. The stripe with beveled edges exhibits multiple resonant peaks modes under an in-plane microwave excitation compared with the single resonant of vertical edge surfaces. The complexity of the observed response is attributed to the spatially nonuniform equilibrium spin distribution at the stripe edges. Micromagnetic simulations identify spin waves as spatially localized mode at the modified edges. This one is also described by effective pinning boundary conditions taking into account finite-size effects, which is related to the exchange interaction, surface anisotropy and dipole-dipole interaction. These results provide detailed insights into the nonlinear spin dynamics of microstructures influenced by the edge properties.

  17. Directional multimode coupler for planar magnonics: Side-coupled magnetic stripes

    Energy Technology Data Exchange (ETDEWEB)

    Sadovnikov, A. V., E-mail: sadovnikovav@gmail.com; Nikitov, S. A. [Laboratory “Metamaterials,” Saratov State University, Saratov 410012 (Russian Federation); Kotel' nikov Institute of Radioengineering and Electronics, Russian Academy of Sciences, Moscow 125009 (Russian Federation); Beginin, E. N.; Sheshukova, S. E.; Romanenko, D. V.; Sharaevskii, Yu. P. [Laboratory “Metamaterials,” Saratov State University, Saratov 410012 (Russian Federation)

    2015-11-16

    We experimentally demonstrate spin waves coupling in two laterally adjacent magnetic stripes. By the means of Brillouin light scattering spectroscopy, we show that the coupling efficiency depends both on the magnonic waveguides' geometry and the characteristics of spin-wave modes. In particular, the lateral confinement of coupled yttrium-iron-garnet stripes enables the possibility of control over the spin-wave propagation characteristics. Numerical simulations (in time domain and frequency domain) reveal the nature of intermodal coupling between two magnonic stripes. The proposed topology of multimode magnonic coupler can be utilized as a building block for fabrication of integrated parallel functional and logic devices such as the frequency selective directional coupler or tunable splitter, enabling a number of potential applications for planar magnonics.

  18. Observation of the supersolid stripe phase in spin-orbit coupled Bose-Einstein condensates

    CERN Document Server

    Li, Junru; Huang, Wujie; Burchesky, Sean; Shteynas, Boris; Top, Furkan Çağrı; Jamison, Alan O; Ketterle, Wolfgang

    2016-01-01

    Supersolidity is an intriguing concept. It combines the property of superfluid flow with the long-range spatial periodicity of solids, two properties which are often mutually exclusive. The original discussion of quantum crystals and supersolidity focuses on solid Helium-4 where it was predicted that vacancies could form dilute weakly interacting Bose-Einstein condensates. In this system, direct observation of supersolidity has been elusive. The concept of supersolidity was then generalized to include other superfluid systems which break the translational symmetry of space. One of such systems is a Bose-Einstein condensate with spin-orbit coupling which has a supersolid stripe phase. Despite several recent studies of this system, the stripe phase has not been observed. Here we report the direct observation of the predicted density modulation of the stripe phase using Bragg reflection. Our work establishes a system with unique symmetry breaking properties. Of future interest is further spatial symmetry breakin...

  19. Discrete modes of a ferromagnetic stripe dipolarly coupled to a ferromagnetic film: a Brillouin light scattering study.

    Science.gov (United States)

    Gubbiotti, G; Tacchi, S; Carlotti, G; Ono, T; Roussigné, Y; Tiberkevich, V S; Slavin, A N

    2007-06-20

    Spin wave excitations in a magnetic structure consisting of a series of long permalloy stripes of a rectangular cross section magnetized along the stripe length and situated above a continuous permalloy film are studied both experimentally and theoretically. Stripes and continuous film are coupled by dipole-dipole interaction across 10 nm thick Cu spacers. Experimental measurements made using the Brillouin light scattering technique (with the light wavevector oriented along the stripe width) provide evidence for one dispersive spin wave mode associated with the continuous film and several discrete non-dispersive modes resonating within the finite width of the stripes.To interpret the experimental spectra, an analytic theory based on the spin wave formalism for finite-width magnetic stripes has been developed, achieving a good qualitative and partly quantitative description of the experimentally observed spin wave spectrum of the system. In particular, it is explained why the presence of a continuous magnetic film near the magnetic stripe leads to a substantial decrease of the frequencies of the discrete dipolar spin wave modes localized within the stripes. A more quantitative description of the measured frequencies and of the spatial profiles of the spin wave eigenmodes has been obtained by numerical calculations performed using a finite element method.

  20. Effect of white striping on chemical composition and nutritional value of chicken breast meat

    Directory of Open Access Journals (Sweden)

    Massimiliano Petracci

    2014-03-01

    Full Text Available White striping defect (appearance of white striations parallel to muscle fiber on surface of breast is considered an emerging issue in chicken breast meat which is related to increasing growth rate of modern hybrid birds. This study was aimed at evaluating the effect of white striping on chemical composition and nutritional value of chicken breast meat. During three replications, a total of 108 Pectoralis major muscles representing three degrees of white striping (absence=normal; presence classified in 2 levels as moderate or severe were selected to determine proximate composition (moisture, protein, lipid and collagen as well as sarcoplasmic and myofibrillar protein profile by sodium dodecyl sulphatepolyacrylamide gel electrophoresis analysis. The results showed that both severe and moderate white-striped fillets had higher fat content (2.53 vs 1.46 vs 0.78%; P<0.001, lower protein level (20.9 vs 22.2 vs 22.9%; P<0.001, decreased quality of protein as proven by higher collagen content (1.30 vs 1.37 vs 1.43%; P<0.001, and different pattern on myofibrillar and sarcoplasmic fractions when compared to normal fillets. Moreover, severe white-striped fillets exhibited higher energy content (450.7 vs 421.1 kJ/100g; P<0.01 with respect to normal meat. In conclusion, there was a large worsening of nutritional value of chicken breast meat following occurrence of white striping and this might impair consumer attitude towards poultry meat.

  1. Mid-Infrared Conductivity from Mid-Gap States Associated with Charge Stripes

    OpenAIRE

    Homes, C. C.; Tranquada, J. M.; Li, Q; Moodenbaugh, A. R.; Buttrey, D. J.

    2002-01-01

    The optical conductivity of La(2-x)Sr(x)NiO(4) has been interpreted in various ways, but so far the proposed interpretations have neglected the fact that the holes doped into the NiO(2) planes order in diagonal stripes, as established by neutron and X-ray scattering. Here we present a study of optical conductivity in La(2)NiO(4+d) with d=2/15, a material in which the charge stripes order three-dimensionally. We show that the conductivity can be decomposed into two components, a mid-infrared p...

  2. Phonons and magnons in stripe-ordered nickelates. A Raman scattering study

    Science.gov (United States)

    Gnezdilov, V.; Kurnosov, V.; Yeremenko, A.; Pashkevich, Yu.; Lemmens, P.; Tranquada, J.; Choi, K.-Y.; Güntherodt, G.; Nakajima, K.

    2005-02-01

    Electronic correlation effects in La2-xSrxNiO4 (x=1/3 and 0.225) lead to spontaneous phase separation into microscopic spin/charge stripes with commensurate and incommensurate order, respectively. Raman scattering experiments on such single-crystalline materials show a rich phenomenology of phonon and magnon anomalies due to the new, self-organized periodicities. These effects are observable as function of temperature but can also be induced by cooling in seemingly small magnetic fields leading to a reorganization of stripe structure.

  3. High-energy magnetic excitations from dynamic stripes in LBCO (x=1/8)

    OpenAIRE

    Xu, Guangyong; Tranquada, J. M.; Perring, T. G.; Gu, G. D.; Fujita, M.; Yamada, K.

    2007-01-01

    We use inelastic neutron scattering to study the temperature dependence of magnetic excitations (for energies up to 100 meV) in the cuprate La$_{1.875}$Ba$_{0.125}$CuO$_4$. This compound exhibits stripe order below a temperature of ~50 K; previous measurements have shown that the magnetic excitations of the stripe-ordered phase have an hour-glass-like dispersion, with a saddle point at ~50 meV. Here we compare measurements in the disordered phase taken at 65 and 300 K. At energies on the scal...

  4. Fluctuations and topological transitions of quantum Hall stripes: Nematics as anisotropic hexatics

    Science.gov (United States)

    Ettouhami, A. M.; Doiron, C. B.; Côté, R.

    2007-10-01

    We study fluctuations and topological melting transitions of quantum Hall stripes near half filling of intermediate Landau levels. Taking the stripe state to be an anisotropic Wigner crystal (AWC) allows us to identify the quantum Hall nematic state conjectured in previous studies of the two-dimensional (2D) electron gas as an anisotropic hexatic. The transition temperature from the AWC to the quantum Hall nematic state is explicitly calculated, and a tentative phase diagram for the 2D electron gas near half filling is suggested.

  5. Surface-plasmon Schottky contact detector based on a symmetric metal stripe in silicon.

    Science.gov (United States)

    Scales, Christine; Breukelaar, Ian; Berini, Pierre

    2010-02-15

    A Schottky contact detector comprising a symmetric metal stripe buried in Si, capable of detecting surface plasmons at wavelengths below the bandgap of Si, is described. A model for the detector is proposed, and its performance is assessed at lambda(0)=1550 nm assuming a CoSi(2) stripe in p-type Si. End-fire coupled responsivities of about 0.1 A/W and minimum detectable powers of about -20 dBm are predicted at room temperature.

  6. Feshbach shape resonance for high Tc pairing in superlattices of quantum stripes and quantum wells

    Directory of Open Access Journals (Sweden)

    A Bianconi

    2006-09-01

    Full Text Available   The Feshbach shape resonances in the interband pairing in superconducting superlattices of quantum wells or quantum stripes is shown to provide the mechanism for high Tc superconductivity. This mechanism provides the Tc amplification driven by the architecture of material: superlattices of quantum wells (intercalated graphite or diborides and superlattices of quantum stripes (doped high Tc cuprate perovskites where the chemical potential is tuned to a Van Hove-Lifshitz singularity (vHs in the electronic energy spectrum of the superlattice associated with the change of the Fermi surface dimensionality in one of the subbands.

  7. Subcellular localization of the stripe disease-specific protein encoded by rice stripe virus (RSV) in its vector, the small brown planthopper, Laodelphax striatellus

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    The stripe disease-specific protein (SP) encoded by the rice stripe virus (RSV) was successfully used as a localization signal of the virus in its vector, the small brown lanthopper, Laodelphax striatellus Fallen. Immunogold parficles in large numbers were detected in various parts of the viruliferous females: the ovum, surface of chorion, the midgut lumen, and the columnar cells. Whereas there was none of these particles in the non-viruliferous females and males,and testis of viruliferous males. Endosymbionts (mycetocytes)were abundant, harboring ovaries of both viruliferous and non-viruliferous females, but none in the testis of males. The results provided us with the direct proof that RSV is a ciruculative and propagative plant virus and it was transovarially transmitted alongside with endosymbionts of its vector. Therefore, we deem it a nice lead for future studies on the mechanism of RSV transmission and functioning of its viral proteins.

  8. Hooking mortality and physiological responses of striped bass angled in freshwater and held in live-release tubes

    Science.gov (United States)

    Bettinger, J.M.; Tomasso, J.R.; Isely, J.J.

    2005-01-01

    Mortality and physiological responses of adult striped bass Morone saxatilis angled from Lake Murray, South Carolina, and held in live-release tubes were evaluated during the spring and summer of 2003. To estimate mortality, we attached external ultrasonic transmitters to 59 striped bass (mean total length [TL] = 585 mm). Striped bass were caught with angling gear, tagged, and immediately released or held in live-release tubes for 2, 4, or 6 h prior to release. No mortality of striped bass was observed during spring. Overall mortality during summer was 83%. Mortality of summer-caught striped bass was not related to tube residence time, fish TL, depth of capture, or surface water temperature. To characterize physiological stress, we measured the plasma cortisol, glucose, lactate, and osmolality levels of 62 additional striped bass (mean TL = 563 mm) that were angled and immediately released or angled and held in live-release tubes. Plasma cortisol, glucose, lactate, and osmolality were positively related to tube residence time. When the hematological characteristics were considered only in relation to tube residence time, responses indicative of physiological stress continued for about 150 min, after which blood chemistry began to return to normal. Live-release tubes appear to be useful for keeping striped bass alive when they are angled from cool water, but they are not effective for striped bass angled from warm water. The high summer mortality of striped bass suggests a need for restrictive fishing regulations during the summer for the Lake Murray striped bass fishery. ?? Copyright by the American Fisheries Society 2005.

  9. Resistance to Asian soybean rust in soybean lines with the pyramided three Rpp genes

    Directory of Open Access Journals (Sweden)

    Naoki Yamanaka

    2013-04-01

    Full Text Available In this study, the influence of genetic background on the resistance level of a soybean line carrying Rpp2, Rpp4, and Rpp5 was evaluated by backcrossing it with a susceptible variety. It was also evaluated eight lines which carry these Rpp genes against five Asian soybean rust (ASR isolates, in order to determine the likely range of resistance against ASR isolates differing in pathogenicity. The results indicated that a high level of resistance against various ASR isolates could be retained in lines carrying the three Rpp genes in susceptible genetic backgrounds, although minor influences of plant genetic background and ASR pathogenicity to the ASR resistance could occur. Thus, lines with the pyramided three Rpp genes should be effective against a complex pathogen population consisting of diverse Phakopsora pachyrhizi isolates.

  10. Green rust formation controls nutrient availability in a ferruginous water column

    DEFF Research Database (Denmark)

    Zegeye, Asfaw; Bonneville, Steeve; Benning, Liane G.

    2013-01-01

    Iron-rich (ferruginous) conditions were a prevalent feature of the ocean throughout much of Earth's history. The nature of elemental cycling in such settings is poorly understood, however, thus hampering reconstruction of paleoenvironmental conditions during key periods in Earth evolution...... a mechanism for reconstructing ancient ocean chemistry. Such reconstructions depend, however, on precise knowledge of the iron minerals formed in the water column. Here, we combine mineralogical and geochemical analyses to demonstrate formation of the mixed-valence iron mineral, green rust, in ferruginous....... This is particularly true regarding controls on nutrient bioavailability, which is intimately linked to Earth's oxygenation history. Elemental scavenging during precipitation of iron minerals exerts a major control on nutrient cycling in ferruginous basins, and the predictable nature of removal processes provides...

  11. Identification of the properties of rust trough the behavior of damageable structures

    Energy Technology Data Exchange (ETDEWEB)

    Thanh, N.Q.; Berthaud, Y. [LMT-Cachan, 61 ay. Pt Wilson 94325 Cachan (France); Care, S. [LMSGC, Institut Navier, 2, allee Kepler, 77420 Champs sur Marne (France); L' Hostis, V. [DEN/DPC/SCCME/LECBA, Bat. 158, CEA Saclay, 91191 Gif sur Yvette (France); Millard, A. [DEN/DM2S/SEMT/LM2S, bat. 607, CEA Saclay, 91191 Gif sur Yvette (France)

    2005-07-01

    This contribution is related to the general problem of the durability of reinforced concrete. Due to corrosion enhanced by the combined effects of chlorides and sometimes by the carbonation of concrete that renders the pH low, rebars corrode. The products of corrosion various in composition are responsible for (i) the cracking of concrete (ii) the loss of section of the bars and (iii) the modification of the interface properties. This corrosion process has been widely studied but some difficulties arise. The mechanical properties of rust are still unknown although their physical properties are well identified i.e. conductivity, density... We have decided to perform corrosion test on small plates (reinforced) submitted to electrical field (to accelerate both the corrosion and the diffusion) in order to follow the evolution of concrete cracking. Small cylinders have been used to study the kinetic of corrosion. (authors)

  12. A SSR Marker for Leaf Rust Resistance Gene Lr19 in Wheat

    Institute of Scientific and Technical Information of China (English)

    LI Xing; YANG Wen-xiang; LI Ya-ning; LIU Da-qun; YAN Hong-fei; MENG Qing-fang; ZHANG Ting

    2006-01-01

    Microsatellite was carried out in Thatcher, six near-isogenic lines and F2 progeny of TcLr19×Thatcher to develop molecular markers for leaf rust resistance gene Lr19. Thirteen primer pairs were screened, of which one primer pair Xgwm44 displayed polymorphsim in the population of TcLr19, Thatcher, and their F2 generations. One marker closed linked to Lr19 resistance trait was obtained, and was named Xgwm44139 bp with the genetic distance 0.9 cM. The research shows that Lr19 has more potential in marker-assisted breeding programs in wheat and provides a step stone for mapping genetic map, physical map and the eventual cloning.

  13. Intensidade da ferrugem do cafeeiro fertirrigado Intensity of rust on fertirrigated coffee

    Directory of Open Access Journals (Sweden)

    Julio César Miranda

    2006-10-01

    Full Text Available A cafeicultura atual tem adotado novas tecnologias de condução e manejo da lavoura, como a irrigação e fertirrigação, visando aumentar a produtividade e, conseqüentemente, a margem de lucro. Com este trabalho, objetivou-se avaliar o efeito de lâminas de irrigação e parcelamentos da adubação, via fertirrigação, sob sistema de gotejamento no progresso da ferrugem e produtividade do cafeeiro. Instalou-se o ensaio na área experimental da Universidade Federal de Lavras, MG, com cafeeiros da cultivar Acaiá Cerrado MG-1474 (Coffea arabica L. de seis anos de idade, em espaçamento de 0,6 x 3,0 m. O delineamento experimental foi em blocos casualizados com quatro repetições. Os tratamentos, em esquema de parcela subdividida, foram constituídos por cinco parcelas representando lâminas de irrigação correspondentes aos valores de 0%, 40%, 60%, 80% e 100% da evaporação do tanque Classe "A" (ECA, e três subparcelas com parcelamentos de adubação nitrogenada e potássica em 3, 6 e 9 vezes. Foram avaliadas a incidência e a severidade, a porcentagem de enfolhamento das plantas e a produtividade dos cafeeiros. Verificou-se que a severidade da ferrugem foi influenciada pela interação entre lâminas de irrigação e parcelamentos de adubação. Houve maior severidade da ferrugem no parcelamento em 3 e 9 vezes nas lâminas 0% e 60% ECA.The coffee planting today has been adopting new technologies to manage and manipulate the farming, such as irrigation and fertirrigation, in order to increase productivity and consequently the profits. This work aimed at evaluating the effects of different irrigation depths and fertilizer splitting by fertirrigation under a drip irrigation system on the progress of the rust and productivity in coffee trees. The research was set at the experimental area of The Federal University of Lavras (UFLA, with six-year-old coffee trees cultivar Acaiá Cerrado MG-1474, (Coffea arabica L. with distance between lines of

  14. Electron-Phonon Anomaly Related to Charge Stripes: Static Stripe Phase Versus Optimally Doped Superconducting La1.85Sr0.15CuO4

    Science.gov (United States)

    Reznik, D.; Pintschovius, L.; Fujita, M.; Yamada, K.; Gu, G. D.; Tranquada, J. M.

    2007-05-01

    Inelastic neutron scattering was used to study the Cu-O bond-stretching vibrations in optimally doped La1.85Sr0.15CuO4 (Tc = 35 K) and in two other cuprates showing static stripe order at low temperatures, i.e. La1.48Nd0.4Sr0.12CuO4 and La1.875Ba0.125CuO4. All three compounds exhibit a very similar phonon anomaly, which is not predicted by conventional band theory. It is argued that the phonon anomaly reflects a coupling to charge inhomogeneities in the form of stripes, which remain dynamic in superconducting La1.85Sr0.15CuO4 down to the lowest temperatures. These results show that the phonon effect indicating stripe formation is not restricted to a narrow region of the phase diagram around the so-called 1/8 anomaly but occurs in optimally doped samples as well.

  15. Time Course Field Analysis of COMT-Downregulated Switchgrass: Lignification, Recalcitrance, and Rust Susceptibility

    Energy Technology Data Exchange (ETDEWEB)

    Baxter, Holly L.; Mazarei, Mitra; Fu, Chunxiang; Cheng, Qunkang; Turner, Geoffrey B.; Sykes, Robert W.; Windham, Mark T.; Davis, Mark F.; Dixon, Richard A.; Wang, Zeng-Yu; Stewart, C. Neal

    2016-05-18

    Modifying plant cell walls by manipulating lignin biosynthesis can improve biofuel yields from lignocellulosic crops. For example, transgenic switchgrass lines with downregulated expression of caffeic acid O-methyltransferase, a lignin biosynthetic enzyme, produce up to 38% more ethanol than controls. The aim of the present study was to understand cell wall lignification over the second and third growing seasons of COMT-downregulated field-grown switchgrass. COMT gene expression, lignification, and cell wall recalcitrance were assayed for two independent transgenic lines at monthly intervals. Switchgrass rust (Puccinia emaculata) incidence was also tracked across the seasons. Trends in lignification over time differed between the 2 years. In 2012, sampling was initiated in mid-growing season on reproductive-stage plants and there was little variation in the lignin content of all lines (COMT-downregulated and control) over time. COMT-downregulated lines maintained 11-16% less lignin, 33-40% lower S/G (syringyl-to-guaiacyl) ratios, and 15-42% higher sugar release relative to controls for all time points. In 2013, sampling was initiated earlier in the season on elongation-stage plants and the lignin content of all lines steadily increased over time, while sugar release expectedly decreased. S/G ratios increased in non-transgenic control plants as biomass accumulated over the season, while remaining relatively stable across the season in the COMT-downregulated lines. Differences in cell wall chemistry between transgenic and non-transgenic lines were not apparent until plants transitioned to reproductive growth in mid-season, after which the cell walls of COMT-downregulated plants exhibited phenotypes consistent with what was observed in 2012. There were no differences in rust damage between transgenics and controls at any time point. These results provide relevant fundamental insights into the process of lignification in a maturing field-grown biofuel feedstock with

  16. How Specific is Non-Hypersensitive Host and Nonhost Resistance of Barley to Rust and Mildew Fungi?

    Institute of Scientific and Technical Information of China (English)

    Niks R. E.

    2014-01-01

    Full nonhost resistance can be deifned as immunity, displayed by an entire plant species against all genotypes of a plant pathogen. Interesting biological questions are, whether the genes responsible for the nonhost status of a plant species have a general or a specific effectiveness to heterologous (“nonhost”) pathogens? Is the nonhost resistance to pathogens of plant species that are related to the nonhost based onR-genes or on other types of genes?We study this question in barley (Hordeum vulgareL.), which is a near-nonhost to several rusts (Puccinia) of cereals and grasses. By crosses and selection we accumulated susceptibility and developed an experimental line, SusPtrit, with high susceptibility to at least nine different heterologous rust taxa such as the wheat andAgropyron leaf rusts (P. triticina andP. persistens, respectively). At the microscopic level there is also some variation among barley accessions in the degree that the heterologous wheat powdery mildew (Blumeria graminisf.sp.tritici) is able to form haustoria in epidermal cells. So, also the genetics of the variation in level of nonhost resistance to heterologous mildew fungi can be studied in barley. Our data obtained on mapping populations involving three regular nonhost-immune accessions (Vada, Cebada Capa and Golden Promise) suggest that nonhost resistance is the joined effect of multiple, quantitative genes (QTLs) and very occasionally a major gene (R-gene?) is involved. Most QTLs have effect to only one or two heterologous rusts, but some have a wider spectrum. This was conifrmed in a set of QTL-NILs. Those QTL-NILs are used to ifne-map the effective genes. In some cases, a QTL region with effectiveness to several heterologous rusts might be a cluster of genes with a more narrow spectrum of effectiveness. Our evidence suggests that nonhost resistance in barley to rust and powdery mildew fungi of related Gramineae is not due toR-genes, but to pathogen species-speciifc quantitative

  17. 32 CFR Appendix E to Part 246 - Stars and Stripes (S&S) Board of Directors

    Science.gov (United States)

    2010-07-01

    ... continuity. They shall be the best qualified personnel available in business-related disciplines. Members... DEFENSE (CONTINUED) MISCELLANEOUS STARS AND STRIPES (S&S) NEWSPAPER AND BUSINESS OPERATIONS Pt. 246, App..., and recommend guidance to its Commander-in-Chief (CINC) on all business operations. Attendance is...

  18. How to detect fluctuating stripes in the high-temperature superconductors

    Science.gov (United States)

    Kivelson, S. A.; Bindloss, I. P.; Fradkin, E.; Oganesyan, V.; Tranquada, J. M.; Kapitulnik, A.; Howald, C.

    2003-10-01

    This article discusses fluctuating order in a quantum disordered phase proximate to a quantum critical point, with particular emphasis on fluctuating stripe order. Optimal strategies are derived for extracting information concerning such local order from experiments, with emphasis on neutron scattering and scanning tunneling microscopy. These ideas are tested by application to two model systems—an exactly solvable one-dimensional (1D) electron gas with an impurity, and a weakly interacting 2D electron gas. Experiments on the cuprate high-temperature superconductors which can be analyzed using these strategies are extensively reviewed. The authors adduce evidence that stripe correlations are widespread in the cuprates. They compare and contrast the advantages of two limiting perspectives on the high-temperature superconductor: weak coupling, in which correlation effects are treated as a perturbation on an underlying metallic (although renormalized) Fermi-liquid state, and strong coupling, in which the magnetism is associated with well-defined localized spins, and stripes are viewed as a form of micro phase separation. The authors present quantitative indicators that the latter view better accounts for the observed stripe phenomena in the cuprates.

  19. Optical Conductivity from Charge Stripes in La_2NiO_4+δ

    Science.gov (United States)

    Tranquada, J. M.; Homes, C. C.; Li, Q.; Moodenbaugh, A. R.; Buttrey, D. J.

    2003-03-01

    It is firmly established by neutron diffraction that holes doped into the NiO2 planes of La_2NiO4 tend to order in diagonal stripes, and it has recently been demonstrated that the charge stripes survive dynamically above the melting transition. It follows that the optical conductivity in the infrared regime must be determined by the electronic structure of the stripes. Theoretical analyses all indicate that stripes should introduce mid-gap states within the charge-transfer gap of the undoped parent compound. We apply such a picture to measurements on La_2NiO_4.133, and show that the resulting 2-component model fits the data well. The mid-infrared (MIR) peak corresponds to excitations from the filled valence band into the empty mid-gap states. With increasing temperature, carriers are thermally excited into the mid-gap band, and a Drude component appears. The shift of the MIR peak with temperature is explained in terms of the Franck-Condon effect. Work at Brookhaven is supported by the U.S. DOE under Contract No. DE-AC02-98CH10886.

  20. Comparison of sensory descriptive texture attributes of broiler breast fillets with different degree of white striping

    Science.gov (United States)

    The white striping condition in chicken meat, known as the presence of white striated tissue in the muscle of breast or thighs, is currently an emerging concern to the chicken processing industry. This condition, negatively affecting appearance in retail chicken and consumer buying decision, but no...