WorldWideScience

Sample records for candidate phylum op5

  1. Diversity and Habitat Niche Modeling of Candidate Archaeal Phylum Aigarchaeota

    Science.gov (United States)

    Alba, T. W.; Goertz, G.; Williams, A. J.; Cole, J. K.; Murugapiran, S. K.; Dodsworth, J. A.; Hedlund, B. P.

    2013-12-01

    ';Aigarchaeota' (formerly known as pSL4 and Hot Water Crenarchaeotic Group I (HWCGI)) is a candidate phylum of Archaea known only by 16S rRNA gene fragments from cultivation-independent microbial surveys and a single composite genome from Candidatus ';Caldiarchaeum subterraneum', an inhabitant of a subterranean gold mine in Japan. Sequences reported in various publications are found exclusively in geothermal settings, but a comprehensive assessment has not yet been performed. We mined public databases for 16S rRNA gene sequences related to known ';Aigarchaeota' and used a combination of approaches to rigorously define the phylogenetic boundaries of the phylum. The analyses supported the proposed relationship between ';Aigarchaeota', Thaumarchaeota, Crenarchaeota, and Korarchaeota in the so-called 'TACK superphylum' and identified ~200 16S rRNA genes and gene fragments belonging to ';Aigarchaeota', including those recovered from terrestrial geothermal systems on several continents (North America, Asia, Africa, Europe, and Oceania) and marine geothermal and subsurface samples in both the Atlantic and Pacific. ';Aigarchaeota' belonged to at least three family- to order-level groups and at least seven genus-level groups. All genus-level groups were recovered from geographically distant locations, suggesting a global distribution within amenable habitats. ';Aigarchaeota'-specific primers for the polymerase chain reaction (PCR) amplification of 16S rRNA genes were designed using SP-Designer and reviewed using the Ribosomal Database Project Probe Match tool. The primers will be used to determine the presence and abundance of ';Aigarchaeota' in a wide variety of samples from terrestrial geothermal systems in the western U.S. and Asia. These phylogenetic data, along with a large geochemical database, will be analyzed using multivariate statistics to develop biogeographic and habitat niche models for ';Aigarchaeota'. This study offers the first coherent view of the

  2. Complete Genome Sequence of the Bacterium Aalborg_AAW-1, Representing a Novel Family within the Candidate Phylum SR1

    DEFF Research Database (Denmark)

    Dueholm, Morten Simonsen; Albertsen, Mads; Stokholm-Bjerregaard, Mikkel;

    2015-01-01

    Here, we present the complete genome sequence of the candidate phylum SR1 bacterium Aalborg_AAW-1. Its 16S rRNA gene is only 85.5% similar to that of the closest relative, RAAC1_SR1, and the genome of Aalborg_AAW-1 consequently represents the first of a novel family within the candidate phylum SR1....

  3. A putative greigite-type magnetosome gene cluster from the candidate phylum Latescibacteria.

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    Lin, Wei; Pan, Yongxin

    2015-04-01

    The intracellular biomineralization of magnetite and/or greigite magnetosomes in magnetotactic bacteria (MTB) is strictly controlled by a group of conserved genes, termed magnetosome genes, which are organized as clusters (or islands) in MTB genomes. So far, all reported MTB are affiliated within the Proteobacteria phylum, the Nitrospirae phylum and the candidate division OP3. Here, we report the discovery of a putative magnetosome gene cluster structure from the draft genome of an uncultivated bacterium belonging to the candidate phylum Latescibacteria (formerly candidate division WS3) recently recovered by Rinke and colleagues, which contains 10 genes with homology to magnetosome mam genes of magnetotactic Proteobacteria and Nitrospirae. Moreover, these genes are phylogenetically closely related to greigite-type magnetosome genes that were only found from the Deltaproteobacteria MTB before, suggesting that the greigite genes may originate earlier than previously imagined. These findings indicate that some members of Latescibacteria may be capable of forming greigite magnetosomes, and thus may play previously unrecognized roles in environmental iron and sulfur cycles. The conserved genomic structure of magnetosome gene cluster in Latescibacteria phylum supports the hypothesis of horizontal transfer of these genes among distantly related bacterial groups in nature. PMID:25382584

  4. Phylogenetic diversity and ecophysiology of Candidate phylum Saccharibacteria in activated sludge

    DEFF Research Database (Denmark)

    Kindaichi, Tomonori; Yamaoka, Shiro; Uehara, Ryohei;

    2016-01-01

    Candidate phylum Saccharibacteria (former TM7) are abundant and widespread in nature, but little is known about their ecophysiology and detailed phylogeny. In this study phylogeny, morphology and ecophysiology of Saccharibacteria were investigated in activated sludge from nine wastewater treatment......-labeled fluorescence and FISH (ELF-FISH). No uptake of acetate, propionate, pyruvate, glycerol and ethanol was observed. These results indicate that Saccharibacteria is a phylogenetically diverse group and play a role in the degradation of various organic compounds as well as sugar compounds under aerobic-, nitrate...

  5. Phylogenetic diversity and ecophysiology of Candidate phylum Saccharibacteria in activated sludge.

    Science.gov (United States)

    Kindaichi, Tomonori; Yamaoka, Shiro; Uehara, Ryohei; Ozaki, Noriatsu; Ohashi, Akiyoshi; Albertsen, Mads; Nielsen, Per Halkjær; Nielsen, Jeppe Lund

    2016-06-01

    Candidate phylum Saccharibacteria (former TM7) are abundant and widespread in nature, but little is known about their ecophysiology and detailed phylogeny. In this study phylogeny, morphology and ecophysiology of Saccharibacteria were investigated in activated sludge from nine wastewater treatment plants (WWTPs) from Japan and Denmark using the full-cycle 16S rRNA approach in combination with microautoradiography (MAR) and fluorescence in situ hybridization (FISH). Phylogenetic analysis showed that Saccharibacteria from all WWTPs were evenly distributed within subdivision 1 and 3 and in a distinct phylogenetic clade. Three probes were designed for the distinct saccharibacterial groups, and revealed morphotypes representing thin filaments, thick filaments and rods/cocci. MAR-FISH results showed that most probe-defined Saccharibacteria utilized glucose under aerobic-, nitrate reducing- and anaerobic conditions. Some Saccharibacteria also utilized N-acetylglucosamine, oleic acid, amino acids and butyrate, which are not predicted from available genomes so far. In addition, some filamentous Saccharibacteria exhibited β-galactosidase and lipase activities determined using a combination of enzyme-labeled fluorescence and FISH (ELF-FISH). No uptake of acetate, propionate, pyruvate, glycerol and ethanol was observed. These results indicate that Saccharibacteria is a phylogenetically diverse group and play a role in the degradation of various organic compounds as well as sugar compounds under aerobic-, nitrate reducing- and anaerobic conditions. PMID:27090759

  6. First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking

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    Yuji Sekiguchi

    2015-01-01

    Full Text Available Filamentous cells belonging to the candidate bacterial phylum KSB3 were previously identified as the causative agent of fatal filament overgrowth (bulking in a high-rate industrial anaerobic wastewater treatment bioreactor. Here, we obtained near complete genomes from two KSB3 populations in the bioreactor, including the dominant bulking filament, using differential coverage binning of metagenomic data. Fluorescence in situ hybridization with 16S rRNA-targeted probes specific for the two populations confirmed that both are filamentous organisms. Genome-based metabolic reconstruction and microscopic observation of the KSB3 filaments in the presence of sugar gradients indicate that both filament types are Gram-negative, strictly anaerobic fermenters capable of non-flagellar based gliding motility, and have a strikingly large number of sensory and response regulator genes. We propose that the KSB3 filaments are highly sensitive to their surroundings and that cellular processes, including those causing bulking, are controlled by external stimuli. The obtained genomes lay the foundation for a more detailed understanding of environmental cues used by KSB3 filaments, which may lead to more robust treatment options to prevent bulking.

  7. Global patterns of abundance, diversity and community structure of the Aminicenantes (candidate phylum OP8.

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    Ibrahim F Farag

    Full Text Available We investigated the global patterns of abundance, diversity, and community structure of members of the Aminicenantes (candidate phylum OP8. Our aim was to identify the putative ecological role(s played by members of this poorly characterized bacterial lineages in various ecosystems. Analysis of near full-length 16S rRNA genes identified four classes and eight orders within the Aminicenantes. Within 3,134 datasets comprising ∼1.8 billion high throughput-generated partial 16S rRNA genes, 47,351 Aminicenantes-affiliated sequences were identified in 913 datasets. The Aminicenantes exhibited the highest relative abundance in hydrocarbon-impacted environments, followed by marine habitats (especially hydrothermal vents and coral-associated microbiome samples, and aquatic, non-marine habitats (especially in terrestrial springs and groundwater samples. While the overall abundance of the Aminicenantes was higher in low oxygen tension as well as non-saline and low salinity habitats, it was encountered in a wide range of oxygen tension, salinities, and temperatures. Analysis of the community structure of the Aminicenantes showed distinct patterns across various datasets that appear to be, mostly, driven by habitat variations rather than prevalent environmental parameters. We argue that the detection of the Aminicenantes across environmental extremes and the observed distinct community structure patterns reflect a high level of intraphylum metabolic diversity and adaptive capabilities that enable its survival and growth in a wide range of habitats and environmental conditions.

  8. In Silico Analysis of the Metabolic Potential and Niche Specialization of Candidate Phylum "Latescibacteria" (WS3.

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    Noha H Youssef

    Full Text Available The "Latescibacteria" (formerly WS3, member of the Fibrobacteres-Chlorobi-Bacteroidetes (FCB superphylum, represents a ubiquitous candidate phylum found in terrestrial, aquatic, and marine ecosystems. Recently, single-cell amplified genomes (SAGs representing the "Latescibacteria" were obtained from the anoxic monimolimnion layers of Sakinaw Lake (British Columbia, Canada, and anoxic sediments of a coastal lagoon (Etoliko lagoon, Western Greece. Here, we present a detailed in-silico analysis of the four SAGs to gain some insights on their metabolic potential and apparent ecological roles. Metabolic reconstruction suggests an anaerobic fermentative mode of metabolism, as well as the capability to degrade multiple polysaccharides and glycoproteins that represent integral components of green (Charophyta and Chlorophyta and brown (Phaeophycaea algae cell walls (pectin, alginate, ulvan, fucan, hydroxyproline-rich glycoproteins, storage molecules (starch and trehalose, and extracellular polymeric substances (EPSs. The analyzed SAGs also encode dedicated transporters for the uptake of produced sugars and amino acids/oligopeptides, as well as an extensive machinery for the catabolism of all transported sugars, including the production of a bacterial microcompartment (BMC to sequester propionaldehyde, a toxic intermediate produced during fucose and rhamnose metabolism. Finally, genes for the formation of gas vesicles, flagella, type IV pili, and oxidative stress response were found, features that could aid in cellular association with algal detritus. Collectively, these results indicate that the analyzed "Latescibacteria" mediate the turnover of multiple complex organic polymers of algal origin that reach deeper anoxic/microoxic habitats in lakes and lagoons. The implications of such process on our understanding of niche specialization in microbial communities mediating organic carbon turnover in stratified water bodies are discussed.

  9. Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges

    OpenAIRE

    Siegl, Alexander; Kamke, Janine; Hochmuth, Thomas; Piel, Jörn; Richter, Michael; Liang, Chunguang; Dandekar, Thomas; Hentschel, Ute

    2010-01-01

    In this study, we present a single-cell genomics approach for the functional characterization of the candidate phylum Poribacteria, members of which are nearly exclusively found in marine sponges. The microbial consortia of the Mediterranean sponge Aplysina aerophoba were singularized by fluorescence-activated cell sorting, and individual microbial cells were subjected to phi29 polymerase-mediated 'whole-genome amplification'. Pyrosequencing of a single amplified genome (SAG) derived from a m...

  10. Comparative Genomics of Candidate Phylum TM6 Suggests That Parasitism Is Widespread and Ancestral in This Lineage.

    Science.gov (United States)

    Yeoh, Yun Kit; Sekiguchi, Yuji; Parks, Donovan H; Hugenholtz, Philip

    2016-04-01

    Candidate phylum TM6 is a major bacterial lineage recognized through culture-independent rRNA surveys to be low abundance members in a wide range of habitats; however, they are poorly characterized due to a lack of pure culture representatives. Two recent genomic studies of TM6 bacteria revealed small genomes and limited gene repertoire, consistent with known or inferred dependence on eukaryotic hosts for their metabolic needs. Here, we obtained additional near-complete genomes of TM6 populations from agricultural soil and upflow anaerobic sludge blanket reactor metagenomes which, together with the two publicly available TM6 genomes, represent seven distinct family level lineages in the TM6 phylum. Genome-based phylogenetic analysis confirms that TM6 is an independent phylum level lineage in the bacterial domain, possibly affiliated with the Patescibacteria superphylum. All seven genomes are small (1.0-1.5 Mb) and lack complete biosynthetic pathways for various essential cellular building blocks including amino acids, lipids, and nucleotides. These and other features identified in the TM6 genomes such as a degenerated cell envelope, ATP/ADP translocases for parasitizing host ATP pools, and protein motifs to facilitate eukaryotic host interactions indicate that parasitism is widespread in this phylum. Phylogenetic analysis of ATP/ADP translocase genes suggests that the ancestral TM6 lineage was also parasitic. We propose the name Dependentiae (phyl. nov.) to reflect dependence of TM6 bacteria on host organisms. PMID:26615204

  11. Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs.

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    Eloe-Fadrosh, Emiley A; Paez-Espino, David; Jarett, Jessica; Dunfield, Peter F; Hedlund, Brian P; Dekas, Anne E; Grasby, Stephen E; Brady, Allyson L; Dong, Hailiang; Briggs, Brandon R; Li, Wen-Jun; Goudeau, Danielle; Malmstrom, Rex; Pati, Amrita; Pett-Ridge, Jennifer; Rubin, Edward M; Woyke, Tanja; Kyrpides, Nikos C; Ivanova, Natalia N

    2016-01-01

    Analysis of the increasing wealth of metagenomic data collected from diverse environments can lead to the discovery of novel branches on the tree of life. Here we analyse 5.2 Tb of metagenomic data collected globally to discover a novel bacterial phylum ('Candidatus Kryptonia') found exclusively in high-temperature pH-neutral geothermal springs. This lineage had remained hidden as a taxonomic 'blind spot' because of mismatches in the primers commonly used for ribosomal gene surveys. Genome reconstruction from metagenomic data combined with single-cell genomics results in several high-quality genomes representing four genera from the new phylum. Metabolic reconstruction indicates a heterotrophic lifestyle with conspicuous nutritional deficiencies, suggesting the need for metabolic complementarity with other microbes. Co-occurrence patterns identifies a number of putative partners, including an uncultured Armatimonadetes lineage. The discovery of Kryptonia within previously studied geothermal springs underscores the importance of globally sampled metagenomic data in detection of microbial novelty, and highlights the extraordinary diversity of microbial life still awaiting discovery. PMID:26814032

  12. Phylogeny and physiology of candidate phylum 'Atribacteria' (OP9/JS1) inferred from cultivation-independent genomics.

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    Nobu, Masaru K; Dodsworth, Jeremy A; Murugapiran, Senthil K; Rinke, Christian; Gies, Esther A; Webster, Gordon; Schwientek, Patrick; Kille, Peter; Parkes, R John; Sass, Henrik; Jørgensen, Bo B; Weightman, Andrew J; Liu, Wen-Tso; Hallam, Steven J; Tsiamis, George; Woyke, Tanja; Hedlund, Brian P

    2016-02-01

    The 'Atribacteria' is a candidate phylum in the Bacteria recently proposed to include members of the OP9 and JS1 lineages. OP9 and JS1 are globally distributed, and in some cases abundant, in anaerobic marine sediments, geothermal environments, anaerobic digesters and reactors and petroleum reservoirs. However, the monophyly of OP9 and JS1 has been questioned and their physiology and ecology remain largely enigmatic due to a lack of cultivated representatives. Here cultivation-independent genomic approaches were used to provide a first comprehensive view of the phylogeny, conserved genomic features and metabolic potential of members of this ubiquitous candidate phylum. Previously available and heretofore unpublished OP9 and JS1 single-cell genomic data sets were used as recruitment platforms for the reconstruction of atribacterial metagenome bins from a terephthalate-degrading reactor biofilm and from the monimolimnion of meromictic Sakinaw Lake. The single-cell genomes and metagenome bins together comprise six species- to genus-level groups that represent most major lineages within OP9 and JS1. Phylogenomic analyses of these combined data sets confirmed the monophyly of the 'Atribacteria' inclusive of OP9 and JS1. Additional conserved features within the 'Atribacteria' were identified, including a gene cluster encoding putative bacterial microcompartments that may be involved in aldehyde and sugar metabolism, energy conservation and carbon storage. Comparative analysis of the metabolic potential inferred from these data sets revealed that members of the 'Atribacteria' are likely to be heterotrophic anaerobes that lack respiratory capacity, with some lineages predicted to specialize in either primary fermentation of carbohydrates or secondary fermentation of organic acids, such as propionate. PMID:26090992

  13. Analysis of the first genome fragment from the marine sponge-associated, novel candidate phylum Poribacteria by environmental genomics.

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    Fieseler, Lars; Quaiser, Achim; Schleper, Christa; Hentschel, Ute

    2006-04-01

    The novel candidate phylum Poribacteria is specifically associated with several marine demosponge genera. Because no representatives of Poribacteria have been cultivated, an environmental genomic approach was used to gain insights into genomic properties and possibly physiological/functional features of this elusive candidate division. In a large-insert library harbouring an estimated 1.1 Gb of microbial community DNA from Aplysina aerophoba, a Poribacteria-positive 16S rRNA gene locus was identified. Sequencing and sequence annotation of the 39 kb size insert revealed 27 open reading frames (ORFs) and two genes for stable RNAs. The fragment exhibited an overall G+C content of 50.5% and a coding density of 86.1%. The 16S rRNA gene was unlinked from a conventional rrn operon. Its flanking regions did not show any synteny to other 16S rRNA encoding loci from microorganisms with unlinked rrn operons. Two of the predicted hypothetical proteins were highly similar to homologues from Rhodopirellula baltica. Furthermore, a novel kind of molybdenum containing oxidoreductase was predicted as well as a series of eight ORFs encoding for unusual transporters, channel or pore forming proteins. This environmental genomics approach provides, for the first time, genomic and, by inference, functional information on the so far uncultivated, sponge-associated candidate division Poribacteria. PMID:16584473

  14. Single-Cell-Genomics-Facilitated Read Binning of Candidate Phylum EM19 Genomes from Geothermal Spring Metagenomes.

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    Becraft, Eric D; Dodsworth, Jeremy A; Murugapiran, Senthil K; Ohlsson, J Ingemar; Briggs, Brandon R; Kanbar, Jad; De Vlaminck, Iwijn; Quake, Stephen R; Dong, Hailiang; Hedlund, Brian P; Swingley, Wesley D

    2016-02-01

    The vast majority of microbial life remains uncatalogued due to the inability to cultivate these organisms in the laboratory. This "microbial dark matter" represents a substantial portion of the tree of life and of the populations that contribute to chemical cycling in many ecosystems. In this work, we leveraged an existing single-cell genomic data set representing the candidate bacterial phylum "Calescamantes" (EM19) to calibrate machine learning algorithms and define metagenomic bins directly from pyrosequencing reads derived from Great Boiling Spring in the U.S. Great Basin. Compared to other assembly-based methods, taxonomic binning with a read-based machine learning approach yielded final assemblies with the highest predicted genome completeness of any method tested. Read-first binning subsequently was used to extract Calescamantes bins from all metagenomes with abundant Calescamantes populations, including metagenomes from Octopus Spring and Bison Pool in Yellowstone National Park and Gongxiaoshe Spring in Yunnan Province, China. Metabolic reconstruction suggests that Calescamantes are heterotrophic, facultative anaerobes, which can utilize oxidized nitrogen sources as terminal electron acceptors for respiration in the absence of oxygen and use proteins as their primary carbon source. Despite their phylogenetic divergence, the geographically separate Calescamantes populations were highly similar in their predicted metabolic capabilities and core gene content, respiring O2, or oxidized nitrogen species for energy conservation in distant but chemically similar hot springs. PMID:26637598

  15. Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges.

    Science.gov (United States)

    Siegl, Alexander; Kamke, Janine; Hochmuth, Thomas; Piel, Jörn; Richter, Michael; Liang, Chunguang; Dandekar, Thomas; Hentschel, Ute

    2011-01-01

    In this study, we present a single-cell genomics approach for the functional characterization of the candidate phylum Poribacteria, members of which are nearly exclusively found in marine sponges. The microbial consortia of the Mediterranean sponge Aplysina aerophoba were singularized by fluorescence-activated cell sorting, and individual microbial cells were subjected to phi29 polymerase-mediated 'whole-genome amplification'. Pyrosequencing of a single amplified genome (SAG) derived from a member of the Poribacteria resulted in nearly 1.6 Mb of genomic information distributed among 554 contigs analyzed in this study. Approximately two-third of the poribacterial genome was sequenced. Our findings shed light on the functional properties and lifestyle of a possibly ancient bacterial symbiont of marine sponges. The Poribacteria are mixotrophic bacteria with autotrophic CO(2)-fixation capacities through the Wood-Ljungdahl pathway. The cell wall is of Gram-negative origin. The Poribacteria produce at least two polyketide synthases (PKSs), one of which is the sponge-specific Sup-type PKS. Several putative symbiosis factors such as adhesins (bacterial Ig-like domains, lamininin G domain proteins), adhesin-related proteins (ankyrin, fibronectin type III) and tetratrico peptide repeat domain-encoding proteins were identified, which might be involved in mediating sponge-microbe interactions. The discovery of genes coding for 24-isopropyl steroids implies that certain fossil biomarkers used to date the origins of metazoan life on earth may possibly be of poribacterial origin. Single-cell genomic approaches, such as those shown herein, contribute to a better understanding of beneficial microbial consortia, of which most members are, because of the lack of cultivation, inaccessible by conventional techniques. PMID:20613790

  16. Physiology and phylogeny of the candidate phylum "Atribacteria" (formerly OP9/JS1) inferred from single-cell genomics and metagenomics

    Science.gov (United States)

    Dodsworth, J. A.; Murugapiran, S.; Blainey, P. C.; Nobu, M.; Rinke, C.; Schwientek, P.; Gies, E.; Webster, G.; Kille, P.; Weightman, A.; Liu, W. T.; Hallam, S.; Tsiamis, G.; Swingley, W.; Ross, C.; Tringe, S. G.; Chain, P. S.; Scholz, M. B.; Lo, C. C.; Raymond, J.; Quake, S. R.; Woyke, T.; Hedlund, B. P.

    2014-12-01

    Single-cell sequencing and metagenomics have extended the genomics revolution to yet-uncultivated microorganisms and provided insights into the coding potential of this so-called "microbial dark matter", including microbes belonging candidate phyla with no cultivated representatives. As more datasets emerge, comparison of individual genomes from different lineages and habitats can provide insight into the phylogeny, conserved features, and potential metabolic diversity of candidate phyla. The candidate bacterial phylum OP9 was originally found in Obsidian Pool, Yellowstone National Park, and it has since been detected in geothermal springs, petroleum reservoirs, and engineered thermal environments worldwide. JS1, another uncultivated bacterial lineage affiliated with OP9, is often abundant in marine sediments associated with methane hydrates, hydrocarbon seeps, and on continental margins and shelves, and is found in other non-thermal marine and subsurface environments. The phylogenetic relationship between OP9, JS1, and other Bacteria has not been fully resolved, and to date no axenic cultures from these lineages have been reported. Recently, 31 single amplified genomes (SAGs) from six distinct OP9 and JS1 lineages have been obtained using flow cytometric and microfluidic techniques. These SAGs were used to inform metagenome binning techniques that identified OP9/JS1 sequences in several metagenomes, extending genomic coverage in three of the OP9 and JS1 lineages. Phylogenomic analyses of these SAG and metagenome bin datasets suggest that OP9 and JS1 constitute a single, deeply branching phylum, for which the name "Atribacteria" has recently been proposed. Overall, members of the "Atribacteria" are predicted to be heterotrophic anaerobes without the capacity for respiration, with some lineages potentially specializing in secondary fermentation of organic acids. A set of signature "Atribacteria" genes was tentatively identified, including components of a bacterial

  17. Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park

    Energy Technology Data Exchange (ETDEWEB)

    Kozubal, Mark; Romine, Margaret F.; Jennings, Ryan; Jay, Z.; Tringe, Susannah G.; Rusch, Douglas B.; Beam, Jake; McCue, Lee Ann; Inskeep, William P.

    2013-03-01

    Geothermal systems in Yellowstone National Park (YNP) provide an outstanding opportunity to understand the origin and evolution of metabolic processes necessary for life in extreme environments including low pH, high temperature, low oxygen and elevated concentrations of reduced iron. Previous phylogenetic studies of acidic ferric iron mats from YNP have revealed considerable diversity of uncultivated and undescribed archaea. The goal of this study was to obtain replicate de novo genome assemblies for a dominant archaeal population inhabiting acidic iron oxide mats in YNP. Detailed analysis of conserved ribosomal and informational processing genes indicate that the replicate assemblies represent a new phylum-level lineage referred to here as 'novel archaeal group 1 (NAG1)'. The NAG1 organisms contain pathways necessary for the catabolism of peptides and complex carbohydrates as well as a bacterial-like Form I CO dehydrogenase complex likely used for energy conservation. Moreover, this novel population contains genes involved in metabolism of oxygen including a Type A heme copper oxidase, a bd-type terminal oxidase and a putative oxygen sensing protoglobin. NAG1 has a variety of unique bacterial-like cofactor biosynthesis and transport genes and a Type3-like CRISPR system. Discovery of NAG1 is critical to our understanding of microbial community structure and function in extant thermophilic iron mats of YNP, and will provide insight regarding the evolution of Archaea in early Earth environments that may have important analogues active in YNP today.

  18. Chthonomonas calidirosea gen. nov., sp. nov., an aerobic, pigmented, thermophilic micro-organism of a novel bacterial class, Chthonomonadetes classis nov., of the newly described phylum Armatimonadetes originally designated candidate division OP10.

    Science.gov (United States)

    Lee, Kevin C-Y; Dunfield, Peter F; Morgan, Xochitl C; Crowe, Michelle A; Houghton, Karen M; Vyssotski, Mikhail; Ryan, Jason L J; Lagutin, Kirill; McDonald, Ian R; Stott, Matthew B

    2011-10-01

    An aerobic, saccharolytic, obligately thermophilic, motile, non-spore-forming bacterium, strain T49(T), was isolated from geothermally heated soil at Hell's Gate, Tikitere, New Zealand. On the basis of 16S rRNA gene sequence similarity, T49(T) is the first representative of a new class in the newly described phylum Armatimonadetes, formerly known as candidate division OP10. Cells of strain T49(T) stained Gram-negative and were catalase-positive and oxidase-negative. Cells possessed a highly corrugated outer membrane. The major fatty acids were 16 : 0, i17 : 0 and ai17 : 0. The G+C content of the genomic DNA was 54.6 mol%. Strain T49(T) grew at 50-73 °C with an optimum temperature of 68 °C, and at pH 4.7-5.8 with an optimum growth pH of 5.3. A growth rate of 0.012 h(-1) was observed under optimal temperature and pH conditions. The primary respiratory quinone was MK-8. Optimal growth was achieved in the absence of NaCl, although growth was observed at NaCl concentrations as high as 2 % (w/v). Strain T49(T) was able to utilize mono- and disaccharides such as cellobiose, lactose, mannose and glucose, as well as branched or amorphous polysaccharides such as starch, CM-cellulose, xylan and glycogen, but not highly linear polysaccharides such as crystalline cellulose or cotton. On the basis of its phylogenetic position and phenotypic characteristics, we propose that strain T49(T) represents a novel bacterial genus and species within the new class Chthonomonadetes classis nov. of the phylum Armatimonadetes. The type strain of Chthonomonas calidirosea gen. nov., sp. nov. is T49(T) ( = DSM 23976(T) = ICMP 18418(T)). PMID:21097641

  19. On the Phylum Vetulicolia

    Institute of Scientific and Technical Information of China (English)

    SHU Degan

    2005-01-01

    The origins and radiations of metazoans, bilaterians, deuterostomes and vertebrates have been recognized as the four most important milestone events in animal history and, conversely four of the toughest and puzzling questions in evolutionary biology. Among them, the first two occurred in the deep time of the Precambrian and have left little information in the fossil records. Fortunately, intensive investigation into the Early Cambrian Chengjiang faunas in the past two decades have revealed numerous significant data on the main episode of the Cambrian Explosion, particularly information on the various earliest-known deuterostomes, leading to a much better understanding of the last two events. The "first fish" Haikouichthys and Myllokunmingia have been proved the oldest-known vertebrates, and to be among the most primitive ones, representing a key transitional group from acraniates to craniates. Indeed, "Paleontological work of Shu and collaborators is revising our understanding of the early evolution of chordates". Moreover, the discovery of the Phylum Vetulicolia may also throw new light on the origin of deuterostomes. This extinct group with simple gill slits might represent one of the roots in the deuterostome lineage, as the evidence of molecular biology and developmental biology has predicted. Here the first discovery of tiny vetulicolians from the Chengjiang Lagerst(a)tte is reported. The evolutionary trend from the giant to the small might represent a special adaptation in early animal history. Since all vetulicolians share similar characters in their anterior section (pharynx), and on the basis of differences in their posterior section, a new classification system is proposed, with a new class, the Heteromorphida erected. As both the "root" group vetulicolians and the "top" group vertebrates in the early deuterostome lineage, as well as those members in between, such as vetulocystids, yunnanozoans, cephalochordates and urochordates, have been recovered, a

  20. A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres

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    Abdul Rahman, Nurdyana; Parks, Donovan H.; Vanwonterghem, Inka; Morrison, Mark; Tyson, Gene W.; Hugenholtz, Philip

    2016-01-01

    The Fibrobacteres has been recognized as a bacterial phylum for over a decade, but little is known about the group beyond its environmental distribution, and characterization of its sole cultured representative genus, Fibrobacter, after which the phylum was named. Based on these incomplete data, it is thought that cellulose hydrolysis, anaerobic metabolism, and lack of motility are unifying features of the phylum. There are also contradicting views as to whether an uncultured sister lineage, candidate phylum TG3, should be included in the Fibrobacteres. Recently, chitin-degrading cultured representatives of TG3 were isolated from a hypersaline soda lake, and the genome of one species, Chitinivibrio alkaliphilus, sequenced and described in detail. Here, we performed a comparative analysis of Fibrobacter succinogenes, C. alkaliphilus and eight near or substantially complete Fibrobacteres/TG3 genomes of environmental populations recovered from termite gut, anaerobic digester, and sheep rumen metagenomes. We propose that TG3 should be amalgamated with the Fibrobacteres phylum based on robust monophyly of the two lineages and shared character traits. Polymer hydrolysis, using a distinctive set of glycoside hydrolases and binding domains, appears to be a prominent feature of members of the Fibrobacteres. Not all members of this phylum are strictly anaerobic as some termite gut Fibrobacteres have respiratory chains adapted to the microaerophilic conditions found in this habitat. Contrary to expectations, flagella-based motility is predicted to be an ancestral and common trait in this phylum and has only recently been lost in F. succinogenes and its relatives based on phylogenetic distribution of flagellar genes. Our findings extend current understanding of the Fibrobacteres and provide an improved basis for further investigation of this phylum. PMID:26779135

  1. A phylogenomic analysis of the bacterial phylum Fibrobacteres

    Directory of Open Access Journals (Sweden)

    Nurdyana eAbdul Rahman

    2016-01-01

    Full Text Available The Fibrobacteres has been recognized as a bacterial phylum for over a decade, but little is known about the group beyond its environmental distribution, and characterization of its sole cultured representative genus, Fibrobacter, after which the phylum was named. Based on these incomplete data, it is thought that cellulose hydrolysis, anaerobic metabolism, and lack of motility are unifying features of the phylum. There are also contradicting views as to whether an uncultured sister lineage, candidate phylum TG3, should be included in the Fibrobacteres. Recently, chitin-degrading cultured representatives of TG3 were obtained isolated from a hypersaline soda lake, and the genome of one species, Chitinivibrio alkaliphilus, sequenced and described in detail. Here, we performed a comparative analysis of Fibrobacter succinogenes, C. alkaliphilus and eight near or substantially complete Fibrobacteres/TG3 genomes of environmental populations recovered from termite gut, anaerobic digester, and sheep rumen metagenomes. We propose that TG3 should be amalgamated with the Fibrobacteres phylum based on robust monophyly of the two lineages and shared character traits. Polymer hydrolysis, using a distinctive set of glycoside hydrolases and binding domains, appears to be a prominent feature of members of the Fibrobacteres. Not all members of this phylum are strictly anaerobic as some termite gut Fibrobacteres have respiratory chains adapted to the microaerophilic conditions found in this habitat. Contrary to expectations, motility is is predicted to be an ancestral and common trait in this phylum and has only recently been lost in F. succinogenes and its relatives based on phylogenetic distribution of flagellar genes. Our findings extend current understanding of the Fibrobacteres and provide an improved basis for further investigation of this phylum.

  2. Exposure distribution, absorbed doses, and energy imparted for panoramic radiography using Orthopantomograph model OP 5

    International Nuclear Information System (INIS)

    The absorbed doses and energy imparted for the Orthopantomograph model OP 5 using two different collimators (0.9-1.3 X 33 mm2 and 0.6-0.9 X 39.5 mm2, respectively) were examined at 70 and 75 kV. The absorbed doses were estimated by thermoluminescence dosimetry in a sectioned phantom and by the energy imparted from measurements of areal exposure using a plane parallel transmission ionization chamber. The exposure distribution was surveyed on radiographic film. The anterior part of the parotid glands received the highest absorbed doses (2.4-3.2 mGy) when the wider collimator was used, with a decrease of two to three times when the narrower collimator was used. Other areas received absorbed doses of about 1.0 to 1.5 mGy or below. An increase of the kV from 70 to 75 had a minor influence. The energy imparted for the wider collimator was 0.6-0.8 and for the narrower collimator, 0.4-0.6 mJ

  3. Expert system in OPS5 for intelligent processing of the alarms in nuclear plants

    International Nuclear Information System (INIS)

    This work intends to establish a model of knowledge representation based on a expert system to supervise either security or operating to be applied generally on monitoring and detecting faults of industrial processes. The model structure proposed here let the system represent the knowledge related to faults on a process using a combination of rules either basic or associative. Besides, the model proposed has a mechanism of propagation of events in real time that acts on this structure making it possible to have an intelligent alarm processing. The rules used by the system define faults from the data acquired by instrumentation (basic rules), or from the establishment of a conjunction of faults already existent (associate rules). The computing implementation of the model defined in this work was developed in OPS5. It was applied on an example consisting of the shutdown of the Angra-I's power plant and was called FDAX (FDA Extended). For the simulated tests the FDAX was connected to the SICA (Integrated System of Angra-I Computers). It results save validity to the model, confirming thus its performance to real time applications. (author)

  4. Single-cell genomics of the candidate phylum Poribacteria

    OpenAIRE

    Kamke, Janine

    2013-01-01

    Marine sponges are the most ancient metazoans and of large ecological importance as drivers of water and nutrient flows in benthic habitats. Furthermore marine sponges are well known for their association with highly abundant and diverse microbial consortia. Microorganisms inhabit the extracellular matrix of marine sponges where they can make up to 35% of the sponge’s biomass. Many microbial symbionts of marine sponges are highly host specific and cannot, or only in very rare abundances, be f...

  5. A novel denitrifying methanotroph of the NC10 phylum and its microcolony.

    Science.gov (United States)

    He, Zhanfei; Cai, Chaoyang; Wang, Jiaqi; Xu, Xinhua; Zheng, Ping; Jetten, Mike S M; Hu, Baolan

    2016-01-01

    The NC10 phylum is a candidate phylum of prokaryotes and is considered important in biogeochemical cycles and evolutionary history. NC10 members are as-yet-uncultured and are difficult to enrich, and our knowledge regarding this phylum is largely limited to the first species 'Candidatus Methylomirabilis oxyfera' (M. oxyfera). Here, we enriched NC10 members from paddy soil and obtained a novel species of the NC10 phylum that mediates the anaerobic oxidation of methane (AOM) coupled to nitrite reduction. By comparing the new 16S rRNA gene sequences with those already in the database, this new species was found to be widely distributed in various habitats in China. Therefore, we tentatively named it 'Candidatus Methylomirabilis sinica' (M. sinica). Cells of M. sinica are roughly coccus-shaped (0.7-1.2 μm), distinct from M. oxyfera (rod-shaped; 0.25-0.5 × 0.8-1.1 μm). Notably, microscopic inspections revealed that M. sinica grew in honeycomb-shaped microcolonies, which was the first discovery of microcolony of the NC10 phylum. This finding opens the possibility to isolate NC10 members using microcolony-dependent isolation strategies. PMID:27582299

  6. Molecular characterization of novel photosynthetic protozoan phylum from corals

    OpenAIRE

    Cihlář, Jaromír

    2010-01-01

    Novel photosynthetic protozoan phylum from caorals eas investigated using molecular biology tools to infer phylogenetic position. According to the data, isolates RM11-26 are also photosynthetic relatives of apicomplexan parasites representing an independent lineage from Chromera velia

  7. Barcoding of Arrow Worms (Phylum Chaetognatha) from Three Oceans: Genetic Diversity and Evolution within an Enigmatic Phylum

    OpenAIRE

    Robert M Jennings; Ann Bucklin; Annelies Pierrot-Bults

    2010-01-01

    Arrow worms (Phylum Chaetognatha) are abundant planktonic organisms and important predators in many food webs; yet, the classification and evolutionary relationships among chaetognath species remain poorly understood. A seemingly simple body plan is underlain by subtle variation in morphological details, obscuring the affinities of species within the phylum. Many species achieve near global distributions, spanning the same latitudinal bands in all ocean basins, while others present disjunct r...

  8. Genome analysis of Elusimicrobium minutum, the first cultivated representative of the Elusimicrobia phylum (formerly Termite Group 1)

    Energy Technology Data Exchange (ETDEWEB)

    Herlemann, D. P. R.; Geissinger, O.; Ikeda-Ohtsubo, W.; Kunin, V.; Sun, H.; Lapidus, A.; Hugenholtz, P.; Brune, A.

    2009-02-01

    The candidate phylum Termite group 1 (TG1), is regularly 1 encountered in termite hindguts but is present also in many other habitats. Here we report the complete genome sequence (1.64 Mbp) of Elusimicrobium minutum strain Pei191{sup T}, the first cultured representative of the TG1 phylum. We reconstructed the metabolism of this strictly anaerobic bacterium isolated from a beetle larva gut and discuss the findings in light of physiological data. E. minutum has all genes required for uptake and fermentation of sugars via the Embden-Meyerhof pathway, including several hydrogenases, and an unusual peptide degradation pathway comprising transamination reactions and leading to the formation of alanine, which is excreted in substantial amounts. The presence of genes encoding lipopolysaccharide biosynthesis and the presence of a pathway for peptidoglycan formation are consistent with ultrastructural evidence of a Gram-negative cell envelope. Even though electron micrographs showed no cell appendages, the genome encodes many genes putatively involved in pilus assembly. We assigned some to a type II secretion system, but the function of 60 pilE-like genes remains unknown. Numerous genes with hypothetical functions, e.g., polyketide synthesis, non-ribosomal peptide synthesis, antibiotic transport, and oxygen stress protection, indicate the presence of hitherto undiscovered physiological traits. Comparative analysis of 22 concatenated single-copy marker genes corroborated the status of Elusimicrobia (formerly TG1) as a separate phylum in the bacterial domain, which was so far based only on 16S rRNA sequence analysis.

  9. A photoactivatable green-fluorescent protein from the phylum Ctenophora

    OpenAIRE

    Haddock, Steven H. D.; Mastroianni, Nadia; Christianson, Lynne M.

    2015-01-01

    Genes for the family of green-fluorescent proteins (GFPs) have been found in more than 100 species of animals, with some species containing six or more copies producing a variety of colours. Thus far, however, these species have all been within three phyla: Cnidaria, Arthropoda and Chordata. We have discovered GFP-type fluorescent proteins in the phylum Ctenophora, the comb jellies. The ctenophore proteins share the xYG chromophore motif of all other characterized GFP-type proteins. These pro...

  10. Chordate evolution and the three-phylum system

    OpenAIRE

    Satoh, Noriyuki; Rokhsar, Daniel; Nishikawa, Teruaki

    2014-01-01

    Traditional metazoan phylogeny classifies the Vertebrata as a subphylum of the phylum Chordata, together with two other subphyla, the Urochordata (Tunicata) and the Cephalochordata. The Chordata, together with the phyla Echinodermata and Hemichordata, comprise a major group, the Deuterostomia. Chordates invariably possess a notochord and a dorsal neural tube. Although the origin and evolution of chordates has been studied for more than a century, few authors have intimately discussed taxonomi...

  11. Barcoding of arrow worms (Phylum Chaetognatha from three oceans: genetic diversity and evolution within an enigmatic phylum.

    Directory of Open Access Journals (Sweden)

    Robert M Jennings

    Full Text Available Arrow worms (Phylum Chaetognatha are abundant planktonic organisms and important predators in many food webs; yet, the classification and evolutionary relationships among chaetognath species remain poorly understood. A seemingly simple body plan is underlain by subtle variation in morphological details, obscuring the affinities of species within the phylum. Many species achieve near global distributions, spanning the same latitudinal bands in all ocean basins, while others present disjunct ranges, in some cases with the same species apparently found at both poles. To better understand how these complex evolutionary and geographic variables are reflected in the species makeup of chaetognaths, we analyze DNA barcodes of the mitochondrial cytochrome oxidase c subunit I (COI gene, from 52 specimens of 14 species of chaetognaths collected mainly from the Atlantic Ocean. Barcoding analysis was highly successful at discriminating described species of chaetognaths across the phylum, and revealed little geographical structure. This barcode analysis reveals hitherto unseen genetic variation among species of arrow worms, and provides insight into some species relationships of this enigmatic group.

  12. Barcoding of arrow worms (Phylum Chaetognatha) from three oceans: genetic diversity and evolution within an enigmatic phylum.

    Science.gov (United States)

    Jennings, Robert M; Bucklin, Ann; Pierrot-Bults, Annelies

    2010-01-01

    Arrow worms (Phylum Chaetognatha) are abundant planktonic organisms and important predators in many food webs; yet, the classification and evolutionary relationships among chaetognath species remain poorly understood. A seemingly simple body plan is underlain by subtle variation in morphological details, obscuring the affinities of species within the phylum. Many species achieve near global distributions, spanning the same latitudinal bands in all ocean basins, while others present disjunct ranges, in some cases with the same species apparently found at both poles. To better understand how these complex evolutionary and geographic variables are reflected in the species makeup of chaetognaths, we analyze DNA barcodes of the mitochondrial cytochrome oxidase c subunit I (COI) gene, from 52 specimens of 14 species of chaetognaths collected mainly from the Atlantic Ocean. Barcoding analysis was highly successful at discriminating described species of chaetognaths across the phylum, and revealed little geographical structure. This barcode analysis reveals hitherto unseen genetic variation among species of arrow worms, and provides insight into some species relationships of this enigmatic group. PMID:20376348

  13. Diversity of the candidate phylum Poribacteria in the marine sponge Aplysina fulva

    OpenAIRE

    Hardoim, C. C. P.; Cox, C. J.; Peixoto, R.S.; Rosado, A. S.; Costa, R.; Van Elsas, J.D.

    2013-01-01

    Poribacterial clone libraries constructed for Aplysina fulva sponge specimens were analysed with respect to diversity and phylogeny. Results imply the coexistence of several, prevalently "intra-specific" poribacterial genotypes in a single sponge host, and suggest quantitative analysis as a desirable approach in studies of the diversity and distribution of poribacterial cohorts in marine sponges.

  14. Diversity of the candidate phylum Poribacteria in the marine sponge Aplysina fulva.

    Science.gov (United States)

    Hardoim, C C P; Cox, C J; Peixoto, R S; Rosado, A S; Costa, R; van Elsas, J D

    2013-01-01

    Poribacterial clone libraries constructed for Aplysina fulva sponge specimens were analysed with respect to diversity and phylogeny. Results imply the coexistence of several, prevalently "intra-specific" poribacterial genotypes in a single sponge host, and suggest quantitative analysis as a desirable approach in studies of the diversity and distribution of poribacterial cohorts in marine sponges. PMID:24159324

  15. Diversity of the candidate phylum Poribacteria in the marine sponge Aplysina fulva

    Directory of Open Access Journals (Sweden)

    C.C.P. Hardoim

    2013-01-01

    Full Text Available Poribacterial clone libraries constructed for Aplysina fulva sponge specimens were analysed with respect to diversity and phylogeny. Results imply the coexistence of several, prevalently "intraspecific" poribacterial genotypes in a single sponge host, and suggest quantitative analysis as a desirable approach in studies of the diversity and distribution of poribacterial cohorts in marine sponges.

  16. Deep phylogeny and evolution of sponges (phylum Porifera).

    Science.gov (United States)

    Wörheide, G; Dohrmann, M; Erpenbeck, D; Larroux, C; Maldonado, M; Voigt, O; Borchiellini, C; Lavrov, D V

    2012-01-01

    Sponges (phylum Porifera) are a diverse taxon of benthic aquatic animals of great ecological, commercial, and biopharmaceutical importance. They are arguably the earliest-branching metazoan taxon, and therefore, they have great significance in the reconstruction of early metazoan evolution. Yet, the phylogeny and systematics of sponges are to some extent still unresolved, and there is an on-going debate about the exact branching pattern of their main clades and their relationships to the other non-bilaterian animals. Here, we review the current state of the deep phylogeny of sponges. Several studies have suggested that sponges are paraphyletic. However, based on recent phylogenomic analyses, we suggest that the phylum Porifera could well be monophyletic, in accordance with cladistic analyses based on morphology. This finding has many implications for the evolutionary interpretation of early animal traits and sponge development. We further review the contribution that mitochondrial genes and genomes have made to sponge phylogenetics and explore the current state of the molecular phylogenies of the four main sponge lineages (Classes), that is, Demospongiae, Hexactinellida, Calcarea, and Homoscleromorpha, in detail. While classical systematic systems are largely congruent with molecular phylogenies in the class Hexactinellida and in certain parts of Demospongiae and Homoscleromorpha, the high degree of incongruence in the class Calcarea still represents a challenge. We highlight future areas of research to fill existing gaps in our knowledge. By reviewing sponge development in an evolutionary and phylogenetic context, we support previous suggestions that sponge larvae share traits and complexity with eumetazoans and that the simple sedentary adult lifestyle of sponges probably reflects some degree of secondary simplification. In summary, while deep sponge phylogenetics has made many advances in the past years, considerable efforts are still required to achieve a

  17. Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes.

    Science.gov (United States)

    Lee, Kevin C-Y; Morgan, Xochitl C; Dunfield, Peter F; Tamas, Ivica; McDonald, Ian R; Stott, Matthew B

    2014-07-01

    Most of the lineages of bacteria have remained unknown beyond environmental surveys using molecular markers. Until the recent characterisation of several strains, the phylum Armatimonadetes (formerly known as 'candidate division OP10') was a dominant and globally-distributed lineage within this 'uncultured majority'. Here we report the first Armatimonadetes genome from the thermophile Chthonomonas calidirosea T49(T) and its role as a saccharide scavenger in a geothermal steam-affected soil environment. Phylogenomic analysis indicates T49(T) to be related closely to the phylum Chloroflexi. The predicted genes encoding for carbohydrate transporters (27 carbohydrate ATP-binding cassette transporter-related genes) and carbohydrate-metabolising enzymes (including at least 55 putative enzymes with glycosyl hydrolase domains) within the 3.43 Mb genome help explain its ability to utilise a wide range of carbohydrates as well as its inability to break down extracellular cellulose. The presence of only a single class of branched amino acid transporter appears to be the causative step for the requirement of isoleucine for growth. The genome lacks many commonly conserved operons (for example, lac and trp). Potential causes for this, such as dispersion of functionally related genes via horizontal gene transfer from distant taxa or recent genome recombination, were rejected. Evidence suggests T49(T) relies on the relatively abundant σ-factors, instead of operonic organisation, as the primary means of transcriptional regulation. Examination of the genome with physiological data and environmental dynamics (including interspecific interactions) reveals ecological factors behind the apparent elusiveness of T49(T) to cultivation and, by extension, the remaining 'uncultured majority' that have so far evaded conventional microbiological techniques. PMID:24477196

  18. LA COLECCIÓN NACIONAL DEL PHYLUM PORIFERA GERARDO GREEN

    OpenAIRE

    Patricia Gómez

    2009-01-01

    Se presenta la importancia y el estado actual de la Colección Nacional del Phylum Porifera Gerardo Green, cuyo acervo alberga a los animales más primitivos de los metazoarios. Es la colección más completa y de mayor diversidad del país, al contener ejemplares provenientes de las costas de todos los estados que presentan litorales marinos y salobres y de algunos cuerpos de agua dulce. Las colecciones científicas son una herramienta básica para la investigación, no sólo proveen de la biodiversi...

  19. Anti-ulcer potentials of phylum mollusca (tropical snail) slime

    Institute of Scientific and Technical Information of China (English)

    Nwodo NJ; Okonta J M; Ezugwu CO; Attama AA

    2009-01-01

    Objective:The effectiveness of the slimy substance in snail to regenerate and repair damaged areas on its body/shell lead to this investigation.Methods:The anti-ulcer'property of snail slime extracted from phylum mollusca (tropical snail)from the giant African snail Archachatina marginata (Fam.Arionidae)was investi-gated using histamine,stress and indomethacin-induced ulcers.The solubility profile of extract was investiga-ted in different solvents and at different temperatures.Chemical analysis was carried out to determine the types of constituents present in the slim,while acute toxicity test was carried out to evaluate its profile of toxicity. The effect of the snail slim on gastrointestinal motility was investigated in mice,while the guinea pig ileum was used to study the effect of the extract on contraction produced by acetylcholine and histamine.The snail slime contained copious quantity of protein,with varying amounts of simple sugars,carbohydrates and fats.The slime was not soluble in most common solvents and increases in temperature,did not appear to increase its sol-ubility.Results:The result further indicated that although the snail slime exhibited significant (P <0.05)an-ti-ulcer induced by stress and histamine,it was most potent against ulcer induced by indomethacin.The snail slime potently inhibited gastrointestinal movement in mice in a dose-dependent manner;however,it was not a-ble to inhibit contraction induced by acetylcholine and histamine in guinea pig ileum.Conclusion:The snail mucin possesses potent antiulcer properties without any toxic effect.The mechanism responsible for the anti-ul-cer property may not be postulated with certainty but cytoprotective and anti-spasmodic activities are most likely to be involved.

  20. Evidence for the widespread distribution of CRISPR-Cas system in the Phylum Cyanobacteria

    OpenAIRE

    Cai, Fei; Axen, Seth D.; Kerfeld, Cheryl A.

    2013-01-01

    Members of the phylum Cyanobacteria inhabit ecologically diverse environments. However, the CRISPR-Cas (clustered regularly interspaced short palindromic repeats, CRISPR associated genes), an extremely adaptable defense system, has not been surveyed in this phylum. We analyzed 126 cyanobacterial genomes and, surprisingly, found CRISPR-Cas in the majority except the marine subclade (Synechococcus and Prochlorococcus), in which cyanophages are a known force shaping their evolution. Multiple obs...

  1. Cross-phylum functional equivalence of Otx genes and the origin of brain patterning

    OpenAIRE

    Adachi, Yoshitsugu

    2004-01-01

    Molecular mechanisms of cephalic development is an intriguing question in evolutionary and developmental biology. Otx gene plays important roles in animal brain and head development and Otx genes are found in all major animal groups: cnidarians, lophotrochozoans, ecdysozoans, anddeuterostomes. Ascidians, positioned near the origin of the phylum Chordata, share a conserved set of anteroposterior patterning genes withthat of vertebrates. Here I report the cross-phylum regulatory potential of th...

  2. The Candidate

    OpenAIRE

    Osborn, John C

    2013-01-01

    ABSTRACT   The Candidate is an attempt to marry elements of journalism and gaming into a format that both entertains and educates the player. The Google-AP Scholarship, a new scholarship award that is given to several journalists a year to work on projects at the threshold of technology and journalism, funded the project. The objective in this prototype version of the game is to put the player in the shoes of a congressional candidate during an off-year election, specificall...

  3. Quorum Sensing: An Under-Explored Phenomenon in the Phylum Actinobacteria

    Science.gov (United States)

    Polkade, Ashish V.; Mantri, Shailesh S.; Patwekar, Umera J.; Jangid, Kamlesh

    2016-01-01

    Quorum sensing is known to play a major role in the regulation of secondary metabolite production, especially, antibiotics, and morphogenesis in the phylum Actinobacteria. Although it is one of the largest bacterial phylum, only 25 of the 342 genera have been reported to use quorum sensing. Of these, only nine have accompanying experimental evidence; the rest are only known through bioinformatic analysis of gene/genome sequences. It is evident that this important communication mechanism is not extensively explored in Actinobacteria. In this review, we summarize the different quorum sensing systems while identifying the limitations of the existing screening strategies and addressing the improvements that have taken place in this field in recent years. The γ-butyrolactone system turned out to be almost exclusively limited to this phylum. In addition, methylenomycin furans, AI-2 and other putative AHL-like signaling molecules are also reported in Actinobacteria. The lack of existing screening systems in detecting minute quantities and of a wider range of signaling molecules was a major reason behind the limited information available on quorum sensing in this phylum. However, recent improvements in screening strategies hold a promising future and are likely to increase the discovery of new signaling molecules. Further, the quorum quenching ability in many Actinobacteria has a great potential in controlling the spread of plant and animal pathogens. A systematic and coordinated effort is required to screen and exploit the enormous potential that quorum sensing in the phylum Actinobacteria has to offer for human benefit. PMID:26904007

  4. Metagenomic Analysis Reveals Unexpected Subgenomic Diversity of Magnetotactic Bacteria within the Phylum Nitrospirae ▿ †

    Science.gov (United States)

    Lin, Wei; Jogler, Christian; Schüler, Dirk; Pan, Yongxin

    2011-01-01

    A targeted metagenomic approach was applied to investigate magnetotactic bacteria (MTB) within the phylum Nitrospirae in Lake Miyun near Beijing, China. Five fosmids containing rRNA operons were identified. Comparative sequence analysis of a total of 172 kb provided new insights into their genome organization and revealed unexpected subgenomic diversity of uncultivated MTB in the phylum Nitrospirae. In addition, affiliation of two novel MTB with the phylum Nitrospirae was verified by fluorescence in situ hybridization. One of them was morphologically similar to “Candidatus Magnetobacterium bavaricum,” but the other differed substantially in cell shape and magnetosome organization from all previously described “Ca. Magnetobacterium bavaricum”-like bacteria. PMID:21057016

  5. Complete genome of Ignavibacterium album, a metabolically versatile, flagellated, facultative anaerobe from the phylum Chlorobi

    Directory of Open Access Journals (Sweden)

    DonaldABryant

    2012-05-01

    Full Text Available Prior to the recent discovery of Ignavibacterium album (I. album, anaerobic photoautotrophic green sulfur bacteria (GSB were the only cultivated members of the bacterial phylum Chlorobi. In contrast to GSB, sequence analysis of the 3.7-Mbp genome of I. album shows that this recently described member of the phylum Chlorobi is a chemoheterotroph with a versatile metabolism. I. album lacks genes for photosynthesis and sulfur oxidation but has a full set of genes for flagella and chemotaxis. The occurrence of genes for multiple electron transfer complexes suggests that I. album is capable of organoheterotrophy under both oxic and anoxic conditions. The occurrence of genes encoding enzymes for CO2 fixation as well as other enzymes of the reductive TCA cycle suggests that mixotrophy may be possible under certain growth conditions. However, known biosynthetic pathways for several amino acids are incomplete; this suggests that I. album is dependent upon on exogenous sources of these metabolites or employs novel biosynthetic pathways. Comparisons of I. album and other members of the phylum Chlorobi suggest that the physiology of the ancestors of this phylum might have been quite different from that of modern GSB.

  6. Comparative Analysis of 35 Basidiomycete Genomes Reveals Diversity and Uniqueness of the Phylum

    Energy Technology Data Exchange (ETDEWEB)

    Riley, Robert; Salamov, Asaf; Otillar, Robert; Fagnan, Kirsten; Boussau, Bastien; Brown, Daren; Henrissat, Bernard; Levasseur, Anthony; Held, Benjamin; Nagy, Laszlo; Floudas, Dimitris; Morin, Emmanuelle; Manning, Gerard; Baker, Scott; Martin, Francis; Blanchette, Robert; Hibbett, David; Grigoriev, Igor V.

    2013-03-11

    Fungi of the phylum Basidiomycota (basidiomycetes), make up some 37percent of the described fungi, and are important in forestry, agriculture, medicine, and bioenergy. This diverse phylum includes symbionts, pathogens, and saprobes including wood decaying fungi. To better understand the diversity of this phylum we compared the genomes of 35 basidiomycete fungi including 6 newly sequenced genomes. The genomes of basidiomycetes span extremes of genome size, gene number, and repeat content. A phylogenetic tree of Basidiomycota was generated using the Phyldog software, which uses all available protein sequence data to simultaneously infer gene and species trees. Analysis of core genes reveals that some 48percent of basidiomycete proteins are unique to the phylum with nearly half of those (22percent) comprising proteins found in only one organism. Phylogenetic patterns of plant biomass-degrading genes suggest a continuum rather than a sharp dichotomy between the white rot and brown rot modes of wood decay among the members of Agaricomycotina subphylum. There is a correlation of the profile of certain gene families to nutritional mode in Agaricomycotina. Based on phylogenetically-informed PCA analysis of such profiles, we predict that that Botryobasidium botryosum and Jaapia argillacea have properties similar to white rot species, although neither has liginolytic class II fungal peroxidases. Furthermore, we find that both fungi exhibit wood decay with white rot-like characteristics in growth assays. Analysis of the rate of discovery of proteins with no or few homologs suggests the high value of continued sequencing of basidiomycete fungi.

  7. Correction: Phylogenetic placement of the enigmatic parasite, Polypodium hydriforme, within the Phylum Cnidaria

    Directory of Open Access Journals (Sweden)

    Collins Allen G

    2009-07-01

    Full Text Available Abstract Correction to Evans, N.M., Lindner, A., Raikova, E.V., Collins, A.G. and Cartwright, P. Phylogenetic placement of the enigmatic parasite, Polypodium hydriforme, within the phylum Cnidaria. BMC Evol Biol, 2008, 8:139.

  8. Cycliophora is a new phylum with affinities to Entoprocta and Ectoprocta

    DEFF Research Database (Denmark)

    Funch, P.; Kristensen, R.M.

    1995-01-01

    aspects of inner budding and brooding of larvae are similar to those of Entoprocta and Ectoprocta. The dispersive larva possesses a mesodermal supporting chordoid structure, otherwise absent in protostomian larvae, We believe that ail the above features of this previously undescribed species warrant the...... recognition of a new phylum with affinities to Ectoprocta and Entoprocta...

  9. Genomic distribution of B-vitamin auxotrophy and uptake transporters in environmental bacteria from the Chloroflexi phylum

    Energy Technology Data Exchange (ETDEWEB)

    Rodionova, Irina A.; Li, Xiaoqing; Plymale, Andrew E.; Motamedchaboki, Khatereh; Konopka, Allan; Romine, Margaret F.; Fredrickson, Jim K.; Osterman, Andrei; Rodionov, Dmitry A.

    2015-04-01

    Bacteria from the Chloroflexi phylum are dominant members of phototrophic microbial mat communities in terrestrial thermal environments. Vitamins of B-group are key intermediates (precursors) in the biosynthesis of indispensable enzyme cofactors driving numerous metabolic processes in all forms of life. A genomics-based reconstruction and comparative analysis of respective biosynthetic and salvage pathways and riboswitch regulons in over 20 representative Chloroflexi genomes revealed a widespread auxotrophy for some of the vitamins. The most prominent predicted phenotypic signature, auxotrophy for vitamins B1 and B7 was experimentally confirmed for the best studied model organism Chloroflexus aurantiacus. These observations along with identified candidate genes for the respective uptake transporters pointed to B vitamin exchange as an important aspect of syntrophic metabolism in microbial communities. Inferred specificities of homologous substrate-binding components of ABC transporters for vitamins B1 (ThiY) and B2 (RibY) were verified by thermofluorescent shift approach. A functional activity of the thiamine-specific transporter ThiXYZ from C. aurantiacus was experimentally verified by genetic complementation in E. coli. Expanding the integrative approach, which was applied here for a comprehensive analysis of B-vitamin metabolism in Chloroflexi would allow reconstruction of metabolic interdependencies in microbial communities.

  10. Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics.

    Science.gov (United States)

    Evans, Paul N; Parks, Donovan H; Chadwick, Grayson L; Robbins, Steven J; Orphan, Victoria J; Golding, Suzanne D; Tyson, Gene W

    2015-10-23

    Methanogenic and methanotrophic archaea play important roles in the global flux of methane. Culture-independent approaches are providing deeper insight into the diversity and evolution of methane-metabolizing microorganisms, but, until now, no compelling evidence has existed for methane metabolism in archaea outside the phylum Euryarchaeota. We performed metagenomic sequencing of a deep aquifer, recovering two near-complete genomes belonging to the archaeal phylum Bathyarchaeota (formerly known as the Miscellaneous Crenarchaeotal Group). These genomes contain divergent homologs of the genes necessary for methane metabolism, including those that encode the methyl-coenzyme M reductase (MCR) complex. Additional non-euryarchaeotal MCR-encoding genes identified in a range of environments suggest that unrecognized archaeal lineages may also contribute to global methane cycling. These findings indicate that methane metabolism arose before the last common ancestor of the Euryarchaeota and Bathyarchaeota. PMID:26494757

  11. On the Extent and Origins of Genic Novelty in the Phylum Nematoda

    OpenAIRE

    Wasmuth, James; Schmid, Ralf; Hedley, Ann; Blaxter, Mark

    2008-01-01

    Background The phylum Nematoda is biologically diverse, including parasites of plants and animals as well as free-living taxa. Underpinning this diversity will be commensurate diversity in expressed genes, including gene sets associated specifically with evolution of parasitism. Methods and Findings Here we have analyzed the extensive expressed sequence tag data (available for 37 nematode species, most of which are parasites) and define over 120,000 distinct putative genes from which we have ...

  12. Crystal growth of bullet-shaped magnetite in magnetotactic bacteria of the Nitrospirae phylum.

    Science.gov (United States)

    Li, Jinhua; Menguy, Nicolas; Gatel, Christophe; Boureau, Victor; Snoeck, Etienne; Patriarche, Gilles; Leroy, Eric; Pan, Yongxin

    2015-02-01

    Magnetotactic bacteria (MTB) are known to produce single-domain magnetite or greigite crystals within intracellular membrane organelles and to navigate along the Earth's magnetic field lines. MTB have been suggested as being one of the most ancient biomineralizing metabolisms on the Earth and they represent a fundamental model of intracellular biomineralization. Moreover, the determination of their specific crystallographic signature (e.g. structure and morphology) is essential for palaeoenvironmental and ancient-life studies. Yet, the mechanisms of MTB biomineralization remain poorly understood, although this process has been extensively studied in several cultured MTB strains in the Proteobacteria phylum. Here, we show a comprehensive transmission electron microscopy (TEM) study of magnetic and structural properties down to atomic scales on bullet-shaped magnetites produced by the uncultured strain MYR-1 belonging to the Nitrospirae phylum, a deeply branching phylogenetic MTB group. We observed a multiple-step crystal growth of MYR-1 magnetite: initial isotropic growth forming cubo-octahedral particles (less than approx. 40 nm), subsequent anisotropic growth and a systematic final elongation along [001] direction. During the crystal growth, one major {111} face is well developed and preserved at the larger basal end of the crystal. The basal {111} face appears to be terminated by a tetrahedral-octahedral-mixed iron surface, suggesting dimensional advantages for binding protein(s), which may template the crystallization of magnetite. This study offers new insights for understanding magnetite biomineralization within the Nitrospirae phylum. PMID:25566884

  13. Distribution and culturability of the uncultivated 'AGG58 cluster' of the Bacteroidetes phylum in aquatic environments.

    Science.gov (United States)

    O'Sullivan, Louise A; Fuller, Katherine E; Thomas, Ellen M; Turley, Carol M; Fry, John C; Weightman, Andrew J

    2004-03-01

    Members of the Bacteroidetes phylum are abundant in aquatic habitats when assessed by fluorescent in situ hybridisation and in some 16S rRNA gene libraries. In this study 16S rRNA gene clone libraries were constructed with bacterial primers that amplify Bacteroidetes sequences well (27F, 1492R) from coastal seawater near Plymouth (UK) during a phytoplankton bloom. Most of the clones (66%, 106/160) affiliated with the Bacteroidetes phylum, and of these 62% (66/106; or 41% 66/160 of the entire library) clustered with marine bacterioplankton clones env.agg58, Arctic97A-17, CF17, CF96 and CF101. This phylogenetic branch of Bacteroidetes was designated the 'AGG58 cluster', and its presence in various aquatic environments was investigated. Two pairs of AGG58-specific 16S rRNA-gene-targeted polymerase chain reaction (PCR) primers were designed and successfully used to detect the cluster in DNA extracts from three UK coastal seawater sites, and from freshwater River Taff epilithon. In addition, 600 putative Bacteroidetes strains were isolated from these sites on relatively high-nutrient agar media. AGG58 cluster specific probes were used to screen the amplified 16S rRNA gene products from the isolates, but no members of the AGG58 cluster were discovered. The least specific probe hybridised with one River Taff water isolate (RW262 NCIMB 13979) which formed a monophyletic group with the genera Crocinitomix, Brumimicrobium and Cryomorpha of the family Cryomorphaceae in the Bacteroidetes phylum. RW262 probably represents the first isolate of a new genus within this family. This study provides new evidence that the uncultivated AGG58 group is abundant, globally distributed, and can be rapidly detected with the new PCR primers described. PMID:19712324

  14. Phylum-Level Conservation of Regulatory Information in Nematodes despite Extensive Non-coding Sequence Divergence.

    Directory of Open Access Journals (Sweden)

    Kacy L Gordon

    2015-05-01

    Full Text Available Gene regulatory information guides development and shapes the course of evolution. To test conservation of gene regulation within the phylum Nematoda, we compared the functions of putative cis-regulatory sequences of four sets of orthologs (unc-47, unc-25, mec-3 and elt-2 from distantly-related nematode species. These species, Caenorhabditis elegans, its congeneric C. briggsae, and three parasitic species Meloidogyne hapla, Brugia malayi, and Trichinella spiralis, represent four of the five major clades in the phylum Nematoda. Despite the great phylogenetic distances sampled and the extensive sequence divergence of nematode genomes, all but one of the regulatory elements we tested are able to drive at least a subset of the expected gene expression patterns. We show that functionally conserved cis-regulatory elements have no more extended sequence similarity to their C. elegans orthologs than would be expected by chance, but they do harbor motifs that are important for proper expression of the C. elegans genes. These motifs are too short to be distinguished from the background level of sequence similarity, and while identical in sequence they are not conserved in orientation or position. Functional tests reveal that some of these motifs contribute to proper expression. Our results suggest that conserved regulatory circuitry can persist despite considerable turnover within cis elements.

  15. Molecular signatures for the phylum Synergistetes and some of its subclades.

    Science.gov (United States)

    Bhandari, Vaibhav; Gupta, Radhey S

    2012-11-01

    Species belonging to the phylum Synergistetes are poorly characterized. Though the known species display Gram-negative characteristics and the ability to ferment amino acids, no single characteristic is known which can define this group. For eight Synergistetes species, complete genome sequences or draft genomes have become available. We have used these genomes to construct detailed phylogenetic trees for the Synergistetes species and carried out comprehensive analysis to identify molecular markers consisting of conserved signature indels (CSIs) in protein sequences that are specific for either all Synergistetes or some of their sub-groups. We report here identification of 32 CSIs in widely distributed proteins such as RpoB, RpoC, UvrD, GyrA, PolA, PolC, MraW, NadD, PyrE, RpsA, RpsH, FtsA, RadA, etc., including a large >300 aa insert within the RpoC protein, that are present in various Synergistetes species, but except for isolated bacteria, these CSIs are not found in the protein homologues from any other organisms. These CSIs provide novel molecular markers that distinguish the species of the phylum Synergistetes from all other bacteria. The large numbers of other CSIs discovered in this work provide valuable information that supports and consolidates evolutionary relationships amongst the sequenced Synergistetes species. Of these CSIs, seven are specifically present in Jonquetella, Pyramidobacter and Dethiosulfovibrio species indicating a cladal relationship among them, which is also strongly supported by phylogenetic trees. A further 15 CSIs that are only present in Jonquetella and Pyramidobacter indicate a close association between these two species. Additionally, a previously described phylogenetic relationship between the Aminomonas and Thermanaerovibrio species was also supported by 9 CSIs. The strong relationships indicated by the indel analysis provide incentives for the grouping of species from these clades into higher taxonomic groups such as families

  16. Diaspore bank of bryophytes in tropical rain forests: the importance of breeding system, phylum and microhabitat.

    Science.gov (United States)

    Maciel-Silva, Adaíses S; Válio, Ivany Ferraz Marques; Rydin, Håkan

    2012-02-01

    Diaspore banks are crucial for the maintenance and resilience of plant communities, but diaspore banks of bryophytes remain poorly known, especially from tropical ecosystems. This is the first study to focus on the role of diaspore banks of bryophytes in tropical rain forests. Our aim was to test whether microhabitat (substrate type) and species traits (breeding system, phylum) are important in explaining the diaspore bank composition. Using samples cultivated in the laboratory, we assessed the number of species and shoots emerging from bark, decaying wood and soil from two sites of the Atlantic rain forest (montane and sea level) in Brazil by comparing the contribution of species by phylum (mosses, liverworts) and breeding system (monoicous, dioicous). More species emerged from bark (68) and decaying wood (55) than from soil (22). Similar numbers of species were found at both sites. Mosses were more numerous in terms of number of species and shoots, and monoicous species dominated over dioicous species. Substrate pH had only weak effects on shoot emergence. Species commonly producing sporophytes and gemmae had a high contribution to the diaspore banks. These superficial diaspore banks represented the extant vegetation rather well, but held more monoicous species (probably short-lived species) compared to dioicous ones. We propose that diaspore bank dynamics are driven by species traits and microhabitat characteristics, and that short-term diaspore banks of bryophytes in tropical rain forests contribute to fast (re)establishment of species after disturbances and during succession, particularly dioicous mosses investing in asexual reproduction and monoicous mosses investing in sexual reproduction. PMID:21842162

  17. Genome sequence of Victivallis vadensis ATCC BAA-548, an anaerobic bacterium from the phylum Lentisphaerae, isolated from the human gastro-intestinal tract

    Energy Technology Data Exchange (ETDEWEB)

    Van Passel, Mark W.J. [Wageningen University and Research Centre, The Netherlands; Kant, Ravi [University of Helsinki; Palva, Airi [University of Helsinki; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Davenport, Karen W. [Los Alamos National Laboratory (LANL); Sims, David [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ovchinnikova, Galina [U.S. Department of Energy, Joint Genome Institute; Richardson, Paul [U.S. Department of Energy, Joint Genome Institute; De Vos, Willem M. [Wageningen University and Research Centre, The Netherlands; Smidt, Hauke [Wageningen University and Research Centre, The Netherlands; Zoetendal, Erwin G. [Wageningen University and Research Centre, The Netherlands

    2011-01-01

    Victivallis vadensis ATCC BAA-548 represents the first cultured representative from the novel phylum Lentisphaerae, a deep-branching bacterial lineage. Few cultured bacteria from this phylum are known, and V. vadensis therefore represents an important organism for evolutionary studies. V. vadensis is a strictly anaerobic sugar-fermenting isolate from the human gastro-intestinal tract.

  18. Evaluating the Utility of Single-Locus DNA Barcoding for the Identification of Ribbon Worms (Phylum Nemertea).

    Science.gov (United States)

    Sundberg, Per; Kvist, Sebastian; Strand, Malin

    2016-01-01

    Whereas many nemerteans (ribbon worms; phylum Nemertea) can be identified from external characters if observed alive, many are still problematic. When it comes to preserved specimens (as in e.g. marine inventories), there is a particular need for specimen identifier alternatives. Here, we evaluate the utility of COI (cytochrome c oxidase subunit I) as a single-locus barcoding gene. We sequenced, data mined, and compared gene fragments of COI for 915 individuals representing 161 unique taxonomic labels for 71 genera, and subjected different constellations of these to both distance-based and character-based DNA barcoding approaches, as well as species delimitation analyses. We searched for the presence or absence of a barcoding gap at different taxonomic levels (phylum, subclass, family and genus) in an attempt to understand at what level a putative barcoding gap presents itself. This was performed both using the taxonomic labels as species predictors and using objectively inferred species boundaries recovered from our species delimitation analyses. Our data suggest that COI works as a species identifier for most groups within the phylum, but also that COI data are obscured by misidentifications in sequence databases. Further, our results suggest that the number of predicted species within the dataset is (in some cases substantially) higher than the number of unique taxonomic labels-this highlights the presence of several cryptic lineages within well-established taxa and underscores the urgency of an updated taxonomic backbone for the phylum. PMID:27171471

  19. Forest-to-pasture conversion increases the diversity of the phylum Verrucomicrobia in Amazon rainforest soils.

    Science.gov (United States)

    Ranjan, Kshitij; Paula, Fabiana S; Mueller, Rebecca C; Jesus, Ederson da C; Cenciani, Karina; Bohannan, Brendan J M; Nüsslein, Klaus; Rodrigues, Jorge L M

    2015-01-01

    The Amazon rainforest is well known for its rich plant and animal diversity, but its bacterial diversity is virtually unexplored. Due to ongoing and widespread deforestation followed by conversion to agriculture, there is an urgent need to quantify the soil biological diversity within this tropical ecosystem. Given the abundance of the phylum Verrucomicrobia in soils, we targeted this group to examine its response to forest-to-pasture conversion. Both taxonomic and phylogenetic diversities were higher for pasture in comparison to primary and secondary forests. The community composition of Verrucomicrobia in pasture soils was significantly different from those of forests, with a 11.6% increase in the number of sequences belonging to subphylum 3 and a proportional decrease in sequences belonging to the class Spartobacteria. Based on 99% operational taxonomic unit identity, 40% of the sequences have not been detected in previous studies, underscoring the limited knowledge regarding the diversity of microorganisms in tropical ecosystems. The abundance of Verrucomicrobia, measured with quantitative PCR, was strongly correlated with soil C content (r = 0.80, P = 0.0016), indicating their importance in metabolizing plant-derived carbon compounds in soils. PMID:26284056

  20. Forest-to-pasture conversion increases the diversity of the phylum Verrucomicrobia in Amazon rainforest soils

    Science.gov (United States)

    Ranjan, Kshitij; Paula, Fabiana S.; Mueller, Rebecca C.; Jesus, Ederson da C.; Cenciani, Karina; Bohannan, Brendan J. M.; Nüsslein, Klaus; Rodrigues, Jorge L. M.

    2015-01-01

    The Amazon rainforest is well known for its rich plant and animal diversity, but its bacterial diversity is virtually unexplored. Due to ongoing and widespread deforestation followed by conversion to agriculture, there is an urgent need to quantify the soil biological diversity within this tropical ecosystem. Given the abundance of the phylum Verrucomicrobia in soils, we targeted this group to examine its response to forest-to-pasture conversion. Both taxonomic and phylogenetic diversities were higher for pasture in comparison to primary and secondary forests. The community composition of Verrucomicrobia in pasture soils was significantly different from those of forests, with a 11.6% increase in the number of sequences belonging to subphylum 3 and a proportional decrease in sequences belonging to the class Spartobacteria. Based on 99% operational taxonomic unit identity, 40% of the sequences have not been detected in previous studies, underscoring the limited knowledge regarding the diversity of microorganisms in tropical ecosystems. The abundance of Verrucomicrobia, measured with quantitative PCR, was strongly correlated with soil C content (r = 0.80, P = 0.0016), indicating their importance in metabolizing plant-derived carbon compounds in soils. PMID:26284056

  1. Global Habitat Suitability and Ecological Niche Separation in the Phylum Placozoa.

    Directory of Open Access Journals (Sweden)

    Omid Paknia

    Full Text Available The enigmatic placozoans, which hold a key position in the metazoan Tree of Life, have attracted substantial attention in many areas of biological and biomedical research. While placozoans have become an emerging model system, their ecology and particularly biogeography remain widely unknown. In this study, we use modelling approaches to explore habitat preferences, and distribution pattern of the placozoans phylum. We provide hypotheses for discrete ecological niche separation between genetic placozoan lineages, which may also help to understand biogeography patterns in other small marine invertebrates. We, here, used maximum entropy modelling to predict placozoan distribution using 20 environmental grids of 9.2 km2 resolution. In addition, we used recently developed metrics of niche overlap to compare habitat suitability models of three genetic clades. The predicted distributions range from 55°N to 44°S and are restricted to regions of intermediate to warm sea surface temperatures. High concentrations of salinity and low nutrient concentrations appear as secondary factors. Tests of niche equivalency reveal the largest differences between placozoan clades I and III. Interestingly, the genetically well-separated clades I and V appear to be ecologically very similar. Our habitat suitability models predict a wider latitudinal distribution for placozoans, than currently described, especially in the northern hemisphere. With respect to biogeography modelling, placozoans show patterns somewhere between higher metazoan taxa and marine microorganisms, with the first group usually showing complex biogeographies and the second usually showing "no biogeography."

  2. Global Habitat Suitability and Ecological Niche Separation in the Phylum Placozoa.

    Science.gov (United States)

    Paknia, Omid; Schierwater, Bernd

    2015-01-01

    The enigmatic placozoans, which hold a key position in the metazoan Tree of Life, have attracted substantial attention in many areas of biological and biomedical research. While placozoans have become an emerging model system, their ecology and particularly biogeography remain widely unknown. In this study, we use modelling approaches to explore habitat preferences, and distribution pattern of the placozoans phylum. We provide hypotheses for discrete ecological niche separation between genetic placozoan lineages, which may also help to understand biogeography patterns in other small marine invertebrates. We, here, used maximum entropy modelling to predict placozoan distribution using 20 environmental grids of 9.2 km2 resolution. In addition, we used recently developed metrics of niche overlap to compare habitat suitability models of three genetic clades. The predicted distributions range from 55°N to 44°S and are restricted to regions of intermediate to warm sea surface temperatures. High concentrations of salinity and low nutrient concentrations appear as secondary factors. Tests of niche equivalency reveal the largest differences between placozoan clades I and III. Interestingly, the genetically well-separated clades I and V appear to be ecologically very similar. Our habitat suitability models predict a wider latitudinal distribution for placozoans, than currently described, especially in the northern hemisphere. With respect to biogeography modelling, placozoans show patterns somewhere between higher metazoan taxa and marine microorganisms, with the first group usually showing complex biogeographies and the second usually showing "no biogeography." PMID:26580806

  3. Entorrhizomycota: A New Fungal Phylum Reveals New Perspectives on the Evolution of Fungi.

    Science.gov (United States)

    Bauer, Robert; Garnica, Sigisfredo; Oberwinkler, Franz; Riess, Kai; Weiß, Michael; Begerow, Dominik

    2015-01-01

    Entorrhiza is a small fungal genus comprising 14 species that all cause galls on roots of Cyperaceae and Juncaceae. Although this genus was established 130 years ago, crucial questions on the phylogenetic relationships and biology of this enigmatic taxon are still unanswered. In order to infer a robust hypothesis about the phylogenetic position of Entorrhiza and to evaluate evolutionary trends, multiple gene sequences and morphological characteristics of Entorrhiza were analyzed and compared with respective findings in Fungi. In our comprehensive five-gene analyses Entorrhiza appeared as a highly supported monophyletic lineage representing the sister group to the rest of the Dikarya, a phylogenetic placement that received but moderate maximum likelihood and maximum parsimony bootstrap support. An alternative maximum likelihood tree with the constraint that Entorrhiza forms a monophyletic group with Basidiomycota could not be rejected. According to the first phylogenetic hypothesis, the teliospore tetrads of Entorrhiza represent the prototype of the dikaryan meiosporangium. The alternative hypothesis is supported by similarities in septal pore structure, cell wall and spindle pole bodies. Based on the isolated phylogenetic position of Entorrhiza and its peculiar combination of features related to ultrastructure and reproduction mode, we propose a new phylum Entorrhizomycota, for the genus Entorrhiza, which represents an apparently widespread group of inconspicuous fungi. PMID:26200112

  4. Distribution of two triamines, spermidine and homospermidine, and an aromatic amine, 2-phenylethylamine, within the phylum Bacteroidetes.

    Science.gov (United States)

    Hosoya, Ryuichi; Hamana, Koei

    2004-10-01

    Cellular polyamines of the newly additional 19 species belonging to the class Bacteroides of the phylum Bacteroidetes were analyzed by HPLC to display polyamine distribution as a chemotaxonomic marker within the total 41 species. Three profiles, the presence of spermidine, the presence of homospermidine and the absence of both triamines, corresponded to their phylogenetical positions within the four families of the class. The occurrence of an aromatic amine, 2-phenylethylamine, extracted into cellular polyamine fraction, was also determined within the 121 species distributed within the phylum. This aromatic amine was found in Cellulophaga lytica, Cytophaga latercula, Tenacibaculum amylolyticum, Tenacibaculum martimum, Tenacibaculum mesophilum and Psychroflexus torquis belonging to the family Flavobacteriaceae of the class Flavobacteria, and Flexibacter flexilis and Microscilla marina belonging to the family Flexibacteraceae of the class Sphingobacteria. PMID:15747230

  5. Estudios sobre invertebrados de colombia i.- presencia de los géneros krohnitta y pterosagitta (phylum chaetognatha) en el litoral caribe de colombia

    OpenAIRE

    Ruíz C., Pedro M.

    2012-01-01

    In this paper three species of the Phylum Chaetognatha (Krohnitta Pacifica, K. subtilis and Pterosagitta draco) are recorded by the first time from the Caribbean shore of Colombia. An statistical analysis is given for selected characters in P. draco.

  6. Comparison of community structures of Candidatus Methylomirabilis oxyfera-like bacteria of NC10 phylum in different freshwater habitats.

    Science.gov (United States)

    Shen, Li-Dong; Wu, Hong-Sheng; Gao, Zhi-Qiu; Liu, Xu; Li, Ji

    2016-01-01

    Methane oxidation coupled to nitrite reduction is mediated by 'Candidatus Methylomirabilis oxyfera' (M. oxyfera), which belongs to the NC10 phylum. In this study, the community composition and diversity of M. oxyfera-like bacteria of NC10 phylum were examined and compared in four different freshwater habitats, including reservoir sediments (RS), pond sediments (PS), wetland sediments (WS) and paddy soils (PAS), by using Illumina-based 16S rRNA gene sequencing. The recovered NC10-related sequences accounted for 0.4-2.5% of the 16S rRNA pool in the examined habitats, and the highest percentage was found in WS. The diversity of NC10 bacteria were the highest in RS, medium in WS, and lowest in PS and PAS. The observed number of OTUs (operational taxonomic unit; at 3% cut-off) were 97, 46, 61 and 40, respectively, in RS, PS, WS and PAS. A heterogeneous distribution of NC10 bacterial communities was observed in the examined habitats, though group B members were the dominant bacteria in each habitat. The copy numbers of NC10 bacterial 16S rRNA genes ranged between 5.8 × 10(6) and 3.2 × 10(7) copies g(-1) sediment/soil in the examined habitats. These results are helpful for a systematic understanding of NC10 bacterial communities in different types of freshwater habitats. PMID:27157928

  7. Dark matter candidates

    International Nuclear Information System (INIS)

    One of the simplest, yet most profound, questions we can ask about the Universe is, how much stuff is in it, and further what is that stuff composed of? Needless to say, the answer to this question has very important implications for the evolution of the Universe, determining both the ultimate fate and the course of structure formation. Remarkably, at this late date in the history of the Universe we still do not have a definitive answer to this simplest of questions---although we have some very intriguing clues. It is known with certainty that most of the material in the Universe is dark, and we have the strong suspicion that the dominant component of material in the Cosmos is not baryons, but rather is exotic relic elementary particles left over from the earliest, very hot epoch of the Universe. If true, the Dark Matter question is a most fundamental one facing both particle physics and cosmology. The leading particle dark matter candidates are: the axion, the neutralino, and a light neutrino species. All three candidates are accessible to experimental tests, and experiments are now in progress. In addition, there are several dark horse, long shot, candidates, including the superheavy magnetic monopole and soliton stars. 13 refs

  8. Larkinella insperata gen. nov., sp. nov., a bacterium of the phylum 'Bacteroidetes' isolated from water of a steam generator.

    Science.gov (United States)

    Vancanneyt, Marc; Nedashkovskaya, Olga I; Snauwaert, Cindy; Mortier, Stefanie; Vandemeulebroecke, Katrien; Hoste, Bart; Dawyndt, Peter; Frolova, Galina M; Janssens, Danielle; Swings, Jean

    2006-01-01

    A Gram-negative bacterium, designated strain LMG 22510T, was isolated from water of a pharmaceutical company steam generator. The cells had a ring-like and horseshoe-shaped morphology and possessed gliding motility. Phylogenetic analysis of the 16S rRNA gene sequence showed that the strain was a member of the Flexibacter group within the phylum 'Bacteroidetes'; its nearest neighbour was Spirosoma linguale (88.8 % sequence similarity). DNA base content, fatty acid composition and biochemical characteristics were determined. Genotypic and phenotypic data indicated that strain LMG 22510T could not be assigned to any recognized genus; therefore, a novel genus and species is proposed, Larkinella insperata gen. nov., sp. nov., with LMG 22510T (= NCIMB 14103T) as the type strain. PMID:16403892

  9. Particle Dark Matter Candidates

    CERN Document Server

    Scopel, Stefano

    2007-01-01

    I give a short overview on some of the favorite particle Cold Dark Matter candidates today, focusing on those having detectable interactions: the axion, the KK-photon in Universal Extra Dimensions, the heavy photon in Little Higgs and the neutralino in Supersymmetry. The neutralino is still the most popular, and today is available in different flavours: SUGRA, nuSUGRA, sub-GUT, Mirage mediation, NMSSM, effective MSSM, scenarios with CP violation. Some of these scenarios are already at the level of present sensitivities for direct DM searches.

  10. Zygomycete genealogy of life (ZyGoLife): A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data

    Science.gov (United States)

    Evolutionary relationships among zygomycete fungi have proven to be among the most difficult to resolve within Kingdom Fungi. Historically they were classified as a single phylum, Zygomycota, based on sexual reproduction by zygospores, frequent asexual reproduction by sporangia, absence of multicell...

  11. Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia

    Directory of Open Access Journals (Sweden)

    Stott Matthew B

    2008-07-01

    Full Text Available Abstract Background The phylum Verrucomicrobia is a widespread but poorly characterized bacterial clade. Although cultivation-independent approaches detect representatives of this phylum in a wide range of environments, including soils, seawater, hot springs and human gastrointestinal tract, only few have been isolated in pure culture. We have recently reported cultivation and initial characterization of an extremely acidophilic methanotrophic member of the Verrucomicrobia, strain V4, isolated from the Hell's Gate geothermal area in New Zealand. Similar organisms were independently isolated from geothermal systems in Italy and Russia. Results We report the complete genome sequence of strain V4, the first one from a representative of the Verrucomicrobia. Isolate V4, initially named "Methylokorus infernorum" (and recently renamed Methylacidiphilum infernorum is an autotrophic bacterium with a streamlined genome of ~2.3 Mbp that encodes simple signal transduction pathways and has a limited potential for regulation of gene expression. Central metabolism of M. infernorum was reconstructed almost completely and revealed highly interconnected pathways of autotrophic central metabolism and modifications of C1-utilization pathways compared to other known methylotrophs. The M. infernorum genome does not encode tubulin, which was previously discovered in bacteria of the genus Prosthecobacter, or close homologs of any other signature eukaryotic proteins. Phylogenetic analysis of ribosomal proteins and RNA polymerase subunits unequivocally supports grouping Planctomycetes, Verrucomicrobia and Chlamydiae into a single clade, the PVC superphylum, despite dramatically different gene content in members of these three groups. Comparative-genomic analysis suggests that evolution of the M. infernorum lineage involved extensive horizontal gene exchange with a variety of bacteria. The genome of M. infernorum shows apparent adaptations for existence under extremely

  12. Water bears in the Anthropocene: a comparison of urban and woodland tardigrade (Phylum Tardigrada communities in Southwestern Louisiana, USA

    Directory of Open Access Journals (Sweden)

    Harry A. Meyer

    2013-05-01

    Full Text Available Humans have had such a profound effect on global ecosystems, including biodiversity, that Anthropocene is being increasingly used as a chronological term to mark the period of greatest human impact. No areas show the effect of human impact on the environment more than cities, which often have novel combinations of species in unique communities. Tardigrades (Phylum Tardigrada have often been collected in cities, but studies dedicated to urban tardigrade biodiversity are few, and those comparing urban diversity with nearby rural or natural sites even fewer. In this paper we compare the diversity and abundance of tardigrade species in Lake Charles with a nearby forested nonurban site, Sam Houston Jones State Park (SHJSP. Although tardigrade density did not differ significantly between Lake Charles and SHJSP, species richness and diversity were greater in SHJSP (17 species, H1=3.01 than in Lake Charles (8 species, H1=1.30. All but one species found in Lake Charles also occurred in SHJSP. The number of species found in Lake Charles lies within the range (5-10 found in previous urban surveys. All tardigrade studies comparing urban with nearby nonurban habitats have found lower species richness in cities.

  13. Phylum-wide analysis of genes/proteins related to the last steps of assembly and export of extracellular polymeric substances (EPS) in cyanobacteria

    OpenAIRE

    Pereira, Sara B.; Rita Mota; Vieira, Cristina P.; Jorge Vieira; Paula Tamagnini

    2015-01-01

    Many cyanobacteria produce extracellular polymeric substances (EPS) with particular characteristics (e.g. anionic nature and presence of sulfate) that make them suitable for industrial processes such as bioremediation of heavy metals or thickening, suspending or emulsifying agents. Nevertheless, their biosynthetic pathway(s) are still largely unknown, limiting their utilization. In this work, a phylum-wide analysis of genes/proteins putatively involved in the assembly and export of EPS in cya...

  14. Pyrinomonas methylaliphatogenes gen. nov., sp. nov., a novel group 4 thermophilic member of the phylum Acidobacteria from geothermal soils

    OpenAIRE

    Crowe, M.A.; Power, J.F.; Morgan, X.C.; Dunfield, P.F.; Lagutin, K.; Rijpstra, W.I.C.; Vyssotski, M.; Sinninghe Damsté, J.S.; Houghton, K.M.; Ryan, J.L.J.; Stott, M.B.

    2014-01-01

    An aerobic, thermophilic, moderately acidophilic non-spore-forming bacterium, strain K22T, wasisolated from geothermally heated soil at Mount Ngauruhoe, New Zealand. On the basis of 16SrRNA gene sequence similarity, K22T was shown to belong to subdivision 4 of the phylumAcidobacteria and to be most closely related to ‘Candidatus Chloracidobacterium thermophilum’(86 %) and Blastocatella fastidiosa (86 %). Cells stained Gram-negative and were catalase andoxidase-positive. The major fatty acids ...

  15. Electoral Systems and Candidate Selection

    NARCIS (Netherlands)

    Hazan, Reuven Y.; Voerman, Gerrit

    2006-01-01

    Electoral systems at the national level and candidate selection methods at the party level are connected, maybe not causally but they do influence each other. More precisely, the electoral system constrains and conditions the parties' menu of choices concerning candidate selection. Moreover, in ligh

  16. Screening of antiangiogenic potential of twenty two marine invertebrate extracts of phylum Mollusca from South East Coast of India

    Institute of Scientific and Technical Information of China (English)

    Pankaj Gupta; Muthuvel Arumugam; Raj Vardhan Azad; Rohit Saxena; Supriyo Ghose; Nihar Ranjan Biswas; Thirumurthy Velpandian

    2014-01-01

    Objective: To evaluate the antiangiogenic potential of twenty two marine invertebrate species of Phylum Mollusca from south east coast of India.Methods:Live specimens of molluscan species were collected and their methanolic extracts were evaluated for preliminary antiangiogenic activity using the in ovo chick chorio-allantoic membrane assay. The extracts were further evaluated for in vivo antiangiogenic activity using chemical cautery induced corneal neovascularization assay in rats and oxygen induced retinopathy assay in rat pups.Results:In the chick chorio-allantoic membrane assay, four methanolic extracts of marine molluscan species viz. Meretrix meretrix, Meretrix casta, Telescopium telescopium and Bursacrumena methanolic extracts exhibited noticeable antiangiogenic activity at the tested concentration of 200 µg whereby they significantly inhibited the VEGF induced proliferation of new blood vessels. Among these four extracts, the methanolic extract of Meretrix casta exhibited relatively higher degree of antiangiogenic activity with an inhibitiory percentage (64.63%) of the VEGF induced neovascularization followed by the methanolic extracts of Telescopium telescopium (62.02%), Bursa crumena (60.48%) and Meretrix meretrix (47.01%). These four methanolic extracts were further evaluated for in vivo antiangiogenic activity whereby the methanolic extract of Telescopium telescopium exhibited most noticeable inhibition (42.58%) of the corneal neovascularization in rats in comparison to the sham treated group, and also exhibited most noticeable inhibition (31.31%) of the oxygen induced retinal neovascularization in rat pups in comparison to the hyperoxia group that was observed for considerable retinal neovascularization.Conclusions:The significant antiangiogenic activity evinced by the extract of Telescopium telescopium merits further investigation for ocular neovascular diseases.

  17. Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation

    Directory of Open Access Journals (Sweden)

    Wincker Patrick

    2009-12-01

    Full Text Available Abstract Background Microsporidia are obligate intracellular eukaryotic parasites with genomes ranging in size from 2.3 Mbp to more than 20 Mbp. The extremely small (2.9 Mbp and highly compact (~1 gene/kb genome of the human parasite Encephalitozoon cuniculi has been fully sequenced. The aim of this study was to characterize noncoding motifs that could be involved in regulation of gene expression in E. cuniculi and to show whether these motifs are conserved among the phylum Microsporidia. Results To identify such signals, 5' and 3'RACE-PCR experiments were performed on different E. cuniculi mRNAs. This analysis confirmed that transcription overrun occurs in E. cuniculi and may result from stochastic recognition of the AAUAAA polyadenylation signal. Such experiments also showed highly reduced 5'UTR's (E. cuniculi genes presented a CCC-like motif immediately upstream from the coding start. To characterize other signals involved in differential transcriptional regulation, we then focused our attention on the gene family coding for ribosomal proteins. An AAATTT-like signal was identified upstream from the CCC-like motif. In rare cases the cytosine triplet was shown to be substituted by a GGG-like motif. Comparative genomic studies confirmed that these different signals are also located upstream from genes encoding ribosomal proteins in other microsporidian species including Antonospora locustae, Enterocytozoon bieneusi, Anncaliia algerae (syn. Brachiola algerae and Nosema ceranae. Based on these results a systematic analysis of the ~2000 E. cuniculi coding DNA sequences was then performed and brings to highlight that 364 translation initiation codons (18.29% of total CDSs had been badly predicted. Conclusion We identified various signals involved in the maturation of E. cuniculi mRNAs. Presence of such signals, in phylogenetically distant microsporidian species, suggests that a common regulatory mechanism exists among the microsporidia. Furthermore

  18. Pyrinomonas methylaliphatogenes gen. nov., sp. nov., a novel group 4 thermophilic member of the phylum Acidobacteria from geothermal soils.

    Science.gov (United States)

    Crowe, M A; Power, J F; Morgan, X C; Dunfield, P F; Lagutin, K; Rijpstra, W I C; Rijpstra, I C; Vyssotski, G N S; Sinninghe Damste, J S; Houghton, K M; Ryan, J L J; Stott, M B

    2014-01-01

    An aerobic, thermophilic, moderately acidophilic non-spore-forming bacterium, strain K22(T), was isolated from geothermally heated soil at Mount Ngauruhoe, New Zealand. On the basis of 16S rRNA gene sequence similarity, K22(T) was shown to belong to subdivision 4 of the phylum Acidobacteria and to be most closely related to 'Candidatus Chloracidobacterium thermophilum' (86 %) and Blastocatella fastidiosa (86 %). Cells stained Gram-negative and were catalase and oxidase-positive. The major fatty acids detected were iso-C15 : 0, iso-C17 : 0, iso-C19 : 0 and iso-C21 : 0 when standard lipid extraction protocols were employed. Analysis of the total cell lipid acid hydrolysate also detected membrane-spanning and ether lipids, which made up approximately 40 % of the total membrane composition. These lipids included dicarboxylic (iso-diabolic) acid and the glyceryl ether of alkyl analogues of iso-C15 : 0 and iso-diabolic acid. The G+C content of the genomic DNA was 59.6 mol% and the primary respiratory quinone was MK-8. Strain K22(T) grew at 50-69 °C with an optimum temperature of 65 °C and at pH 4.1-7.8 with an optimum growth pH of 6.5. NaCl tolerance was up to 1 % (w/v). Cells displayed a chemoheterotrophic and obligately aerobic metabolism. Cells grew on nutrient broth, alginate, arabinose, Casamino acids, glucose, lactate, formate, mannose, sodium alginate, peptone, sucrose, tryptone, xanthan, xylan, xylose and yeast extract. Nitrogen sources included nitrate, ammonium, urea, yeast extract and Casamino acids, but not dinitrogen gas. The distinct phylogenetic position and the phenotypic characteristics separate strain K22(T) from all other members of the class Acidobacteria and indicate that it represents a novel species and genus, for which the name Pyrinomonas methylaliphatogenes gen. nov., sp. nov. is proposed. The type strain of the type species is K22(T) ( = DSM 25857(T) = ICMP 18710(T)). PMID:24048862

  19. Candidate gene prioritization with Endeavour.

    Science.gov (United States)

    Tranchevent, Léon-Charles; Ardeshirdavani, Amin; ElShal, Sarah; Alcaide, Daniel; Aerts, Jan; Auboeuf, Didier; Moreau, Yves

    2016-07-01

    Genomic studies and high-throughput experiments often produce large lists of candidate genes among which only a small fraction are truly relevant to the disease, phenotype or biological process of interest. Gene prioritization tackles this problem by ranking candidate genes by profiling candidates across multiple genomic data sources and integrating this heterogeneous information into a global ranking. We describe an extended version of our gene prioritization method, Endeavour, now available for six species and integrating 75 data sources. The performance (Area Under the Curve) of Endeavour on cross-validation benchmarks using 'gold standard' gene sets varies from 88% (for human phenotypes) to 95% (for worm gene function). In addition, we have also validated our approach using a time-stamped benchmark derived from the Human Phenotype Ontology, which provides a setting close to prospective validation. With this benchmark, using 3854 novel gene-phenotype associations, we observe a performance of 82%. Altogether, our results indicate that this extended version of Endeavour efficiently prioritizes candidate genes. The Endeavour web server is freely available at https://endeavour.esat.kuleuven.be/. PMID:27131783

  20. Empathy Development in Teacher Candidates

    Science.gov (United States)

    Boyer, Wanda

    2010-01-01

    Using a grounded theory research design, the author examined 180 reflective essays of teacher candidates who participated in a "Learning Process Project," in which they were asked to synthesize and document their discoveries about the learning process over the course of a completely new learning experience as naive learners. This study explored…

  1. Candidate Prediction Models and Methods

    DEFF Research Database (Denmark)

    Nielsen, Henrik Aalborg; Nielsen, Torben Skov; Madsen, Henrik;

    2005-01-01

    This document lists candidate prediction models for Work Package 3 (WP3) of the PSO-project called ``Intelligent wind power prediction systems'' (FU4101). The main focus is on the models transforming numerical weather predictions into predictions of power production. The document also outlines the...

  2. Host-associated bacterial taxa from Chlorobi, Chloroflexi, GN02, Synergistetes, SR1, TM7, and WPS-2 Phyla/candidate divisions

    Directory of Open Access Journals (Sweden)

    Anuj Camanocha

    2014-10-01

    Full Text Available Background and objective: In addition to the well-known phyla Firmicutes, Proteobacteria, Bacteroidetes, Actinobacteria, Spirochaetes, Fusobacteria, Tenericutes, and Chylamydiae, the oral microbiomes of mammals contain species from the lesser-known phyla or candidate divisions, including Synergistetes, TM7, Chlorobi, Chloroflexi, GN02, SR1, and WPS-2. The objectives of this study were to create phyla-selective 16S rDNA PCR primer pairs, create selective 16S rDNA clone libraries, identify novel oral taxa, and update canine and human oral microbiome databases. Design: 16S rRNA gene sequences for members of the lesser-known phyla were downloaded from GenBank and Greengenes databases and aligned with sequences in our RNA databases. Primers with potential phylum level selectivity were designed heuristically with the goal of producing nearly full-length 16S rDNA amplicons. The specificity of primer pairs was examined by making clone libraries from PCR amplicons and determining phyla identity by BLASTN analysis. Results: Phylum-selective primer pairs were identified that allowed construction of clone libraries with 96–100% specificity for each of the lesser-known phyla. From these clone libraries, seven human and two canine novel oral taxa were identified and added to their respective taxonomic databases. For each phylum, genome sequences closest to human oral taxa were identified and added to the Human Oral Microbiome Database to facilitate metagenomic, transcriptomic, and proteomic studies that involve tiling sequences to the most closely related taxon. While examining ribosomal operons in lesser-known phyla from single-cell genomes and metagenomes, we identified a novel rRNA operon order (23S-5S-16S in three SR1 genomes and the splitting of the 23S rRNA gene by an I-CeuI-like homing endonuclease in a WPS-2 genome. Conclusions: This study developed useful primer pairs for making phylum-selective 16S rRNA clone libraries. Phylum-specific libraries

  3. IAEA Director General candidates announced

    International Nuclear Information System (INIS)

    Full text: The IAEA today confirms receipt of the nomination of five candidates for Director General of the IAEA. Nominations of the following individuals have been received by the Chairperson of the IAEA Board of Governors, Ms. Taous Feroukhi: Mr. Jean-Pol Poncelet of Belgium; Mr. Yukiya Amano of Japan; Mr. Ernest Petric of Slovenia; Mr. Abdul Samad Minty of South Africa; and Mr. Luis Echavarri of Spain. The five candidates were nominated in line with a process approved by the Board in October 2008. IAEA Director General Mohamed ElBaradei's term of office expires on 30 November 2009. He has served as Director General since 1997 and has stated that he is not available for a fourth term of office. (IAEA)

  4. VALUE ORIENTATIONS OF TEACHER CANDIDATES

    OpenAIRE

    YAPICI, Asım; KUTLU, M.Oğuz; BİLİCAN, F.Işıl

    2012-01-01

    Abstract This cross-sectional, descriptive study examined the change in values in time among teacher candidates. The Schwartz Values Inventory was administered to 708 freshmen and senior students studying at Cukurova University, Education Faculty. The results have shown that the students at the department of Science Education valued power, achievement, stimulation; the department of English Teaching Education valued hedonism; and the department of Education of Religious Culture valued un...

  5. Promising new cryogenic seal candidate

    International Nuclear Information System (INIS)

    Of the five seal candidates considered for the main propellant system of the Space Shuttle, only one candidate, the fluoroplastic Halar, satisfied all tests including the critical LO2 impact test and the cryogenic compression sealability test. Radiation-cross-linked Halar is a tough, strong thermoplastic that not only endured one hundred 2200 N compression cycles at 83 K while mounted in a standard military O-ring gland without cracking or deforming, but improved in sealability as a result of this cycling. Although these Halar O-rings require much higher sealing forces (approximately 500 N) at room temperature than rubber O-rings, on cooling to cryogenic temperatures the required sealing force only doubles, whereas the sealing force for rubber O-rings increases eightfold. Although these Halar O-rings were inadequately cross-linked, they still exhibited promise as LO2-compatible cryogenic seals. It is expected that their high-temperature properties can be greatly improved by higher degrees of cross-linking (e.g., by 20 mrad of radiation) without compromising their already excellent low-temperature properties. A direct comparison should then be obtained between the best of the cross-linked Halar compounds and the current commercial cryogenic seal materials, filled Teflon and Kel-F

  6. Longimicrobium terrae gen. nov., sp. nov., an oligotrophic bacterium of the under-represented phylum Gemmatimonadetes isolated through a system of miniaturized diffusion chambers.

    Science.gov (United States)

    Pascual, Javier; García-López, Marina; Bills, Gerald F; Genilloud, Olga

    2016-05-01

    A novel chemo-organoheterotroph bacterium, strain CB-286315T, was isolated from a Mediterranean forest soil sampled at the Sierra de Tejeda, Almijara and Alhama Natural Park, Spain, by using the diffusion sandwich system, a device with 384 miniature diffusion chambers. 16S rRNA gene sequence analyses identified the isolate as a member of the under-represented phylum Gemmatimonadetes, where 'Gemmatirosa kalamazoonensis' KBS708, Gemmatimonas aurantiaca T-27T and Gemmatimonas phototrophica AP64T were the closest relatives, with respective similarities of 84.4, 83.6 and 83.3 %. Strain CB-286315T was characterized as a Gram-negative, non-motile, short to long rod-shaped bacterium. Occasionally, some cells attained an unusual length, up to 35-40 μm. The strain showed positive responses for catalase and cytochrome-c oxidase and division by binary fission, and exhibited an aerobic metabolism, showing optimal growth under normal atmospheric conditions. Strain CB-286315T was also able to grow under micro-oxic atmospheres, but not under anoxic conditions. The strain is a slowly growing bacterium able to grow under low nutrient concentrations. Major fatty acids included iso-C17 : 1ω9c, summed feature 3 (C16 : 1ω7c and/or iso-C15 : 0 2-OH), C16 : 0 and iso-C17 : 0. The major polar lipids were phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, two unidentified glycolipids and three phospholipids. The major isoprenoid quinone was MK-8 and the diagnostic diamino acid was meso-diaminopimelic acid. The DNA G+C content was 67.0 mol%. Based on a polyphasic taxonomic characterization, strain CB-286315T represents a novel genus and species, Longimicrobium terrae gen. nov., sp. nov., within the phylum Gemmatimonadetes. The type strain of Longimicrobium terrae is strain CB-286315T ( = DSM 29007T = CECT 8660T). In order to classify the novel taxon within the existing taxonomic framework, the family Longimicrobiaceae fam. nov., order

  7. An Efficient Approach for Candidate Set Generation

    OpenAIRE

    Nawar Malhis; Arden Ruttan; Hazem H. Refai

    2005-01-01

    When Apriori was first introduced as an algorithm for discovering association rules in a database of market basket data, the problem of generating the candidate set of the large set was a bottleneck in Apriori's performance, both in space and computational requirements. At first, many unsuccessful attempts were made to improve the generation of a candidate set. Later, other algorithms that out performed Apriori were developed that generate association rules without using a candidate set. They...

  8. Cardiac evaluation of liver transplant candidates

    OpenAIRE

    Mandell, Mercedes Susan; Lindenfeld, JoAnn; Tsou, Mei-Yung; Zimmerman, Michael

    2008-01-01

    Physicians previously thought that heart disease was rare in patients with end stage liver disease. However, recent evidence shows that the prevalence of ischemic heart disease and cardiomyopathy is increased in transplant candidates compared to most other surgical candidates. Investigators estimate that up to 26% of all liver transplant candidates have at least one critical coronary artery stenosis and that at least half of these patients will die perioperatively of cardiac complications. Ca...

  9. 187-gene phylogeny of protozoan phylum Amoebozoa reveals a new class (Cutosea) of deep-branching, ultrastructurally unique, enveloped marine Lobosa and clarifies amoeba evolution.

    Science.gov (United States)

    Cavalier-Smith, Thomas; Chao, Ema E; Lewis, Rhodri

    2016-06-01

    Monophyly of protozoan phylum Amoebozoa, and subdivision into subphyla Conosa and Lobosa each with different cytoskeletons, are well established. However early diversification of non-ciliate lobose amoebae (Lobosa) is poorly understood. To clarify it we used recently available transcriptomes to construct a 187-gene amoebozoan tree for 30 species, the most comprehensive yet. This robustly places new genus Atrichosa (formerly lumped with Trichosphaerium) within lobosan class Tubulinea, not Discosea as previously supposed. We identified an earliest diverging lobosan clade comprising marine amoebae armoured by porose scaliform cell-envelopes, here made a novel class Cutosea with two pseudopodially distinct new families. Cutosea comprise Sapocribrum, ATCC PRA-29 misidentified as 'Pessonella', plus from other evidence Squamamoeba. We confirm that Acanthamoeba and ATCC 50982 misidentified as Stereomyxa ramosa are closely related. Discosea have a strongly supported major subclade comprising Thecamoebida plus Glycostylida (suborders Dactylopodina, Stygamoebina; Vannellina) phylogenetically distinct from Centramoebida. Stygamoeba is sister to Dactylopodina. Himatismenida are either sister to Centramoebida or deeper branching. Discosea usually appear holophyletic (rarely paraphyletic). Paramoeba transcriptomes include prokinetoplastid Perkinsela-like endosymbiont sequences. Cunea, misidentified as Mayorella, is closer to Paramoeba than Vexillifera within holophyletic Dactylopodina. Taxon-rich site-heterogeneous rDNA trees confirm cutosan distinctiveness, allow improved conosan taxonomy, and reveal previous dictyostelid tree misrooting. PMID:27001604

  10. Endomicrobium proavitum, the first isolate of Endomicrobia class. nov. (phylum Elusimicrobia)--an ultramicrobacterium with an unusual cell cycle that fixes nitrogen with a Group IV nitrogenase.

    Science.gov (United States)

    Zheng, Hao; Dietrich, Carsten; Radek, Renate; Brune, Andreas

    2016-01-01

    The bacterial tree contains many deep-rooting clades without any cultured representatives. One such clade is 'Endomicrobia', a class-level lineage in the phylum Elusimicrobia represented so far only by intracellular symbionts of termite gut flagellates. Here, we report the isolation and characterization of the first free-living member of this clade from sterile-filtered gut homogenate of defaunated (starch-fed) Reticulitermes santonensis. Strain Rsa215 is a strictly anaerobic ultramicrobacterium that grows exclusively on glucose, which is fermented to lactate, acetate, hydrogen and CO2. Ultrastructural analysis revealed a Gram-negative cell envelope and a peculiar cell cycle. The genome contains a single set of nif genes that encode homologues of Group IV nitrogenases, which were so far considered to have functions other than nitrogen fixation. We documented nitrogenase activity and diazotrophic growth by measuring acetylene reduction activity and (15)N2 incorporation into cell mass, and demonstrated that transcription of nifH and nitrogenase activity occur only in the absence of ammonium. Based on the ancestral relationship to 'Candidatus Endomicrobium trichonymphae' and other obligate endosymbionts, we propose the name 'Endomicrobium proavitum' gen. nov., sp. nov. for the first isolate of this lineage and the name 'Endomicrobia' class. nov. for the entire clade. PMID:26119974

  11. Special Education Teacher Candidate Assessment: A Review

    Science.gov (United States)

    McCall, Zach; McHatton, Patricia Alvarez; Shealey, Monika Williams

    2014-01-01

    Teacher preparation has been under intense scrutiny in recent years. In order for preparation of special education teacher candidates to remain viable, candidate assessment practices must apply practices identified in the extant literature base, while special education teacher education researchers must extend this base with rigorous efforts to…

  12. Do People 'Like' Candidates on Facebook?

    DEFF Research Database (Denmark)

    Nielsen, Rasmus Kleis

    The online popularity of a few exceptional candidates has led many to suggest that social media have given politicians powerful ways of communicating directly with voters. In this paper, we examine whether this is happening on a significant scale and show, based on analysis of 224 candidates invo...

  13. Single-Cell Genome and Group-Specific dsrAB Sequencing Implicate Marine Members of the Class Dehalococcoidia (Phylum Chloroflexi) in Sulfur Cycling

    Science.gov (United States)

    Cooper, Myriel; Schreiber, Lars; Lloyd, Karen G.; Baker, Brett J.; Petersen, Dorthe G.; Jørgensen, Bo Barker; Stepanauskas, Ramunas; Reinhardt, Richard; Schramm, Andreas; Loy, Alexander; Adrian, Lorenz

    2016-01-01

    ABSTRACT The marine subsurface sediment biosphere is widely inhabited by bacteria affiliated with the class Dehalococcoidia (DEH), phylum Chloroflexi, and yet little is known regarding their metabolisms. In this report, genomic content from a single DEH cell (DEH-C11) with a 16S rRNA gene that was affiliated with a diverse cluster of 16S rRNA gene sequences prevalent in marine sediments was obtained from sediments of Aarhus Bay, Denmark. The distinctive gene content of this cell suggests metabolic characteristics that differ from those of known DEH and Chloroflexi. The presence of genes encoding dissimilatory sulfite reductase (Dsr) suggests that DEH could respire oxidized sulfur compounds, although Chloroflexi have never been implicated in this mode of sulfur cycling. Using long-range PCR assays targeting DEH dsr loci, dsrAB genes were amplified and sequenced from various marine sediments. Many of the amplified dsrAB sequences were affiliated with the DEH Dsr clade, which we propose equates to a family-level clade. This provides supporting evidence for the potential for sulfite reduction by diverse DEH species. DEH-C11 also harbored genes encoding reductases for arsenate, dimethyl sulfoxide, and halogenated organics. The reductive dehalogenase homolog (RdhA) forms a monophyletic clade along with RdhA sequences from various DEH-derived contigs retrieved from available metagenomes. Multiple facts indicate that this RdhA may not be a terminal reductase. The presence of other genes indicated that nutrients and energy may be derived from the oxidation of substituted homocyclic and heterocyclic aromatic compounds. Together, these results suggest that marine DEH play a previously unrecognized role in sulfur cycling and reveal the potential for expanded catabolic and respiratory functions among subsurface DEH. PMID:27143384

  14. Picomonas judraskeda gen. et sp. nov.: the first identified member of the Picozoa phylum nov., a widespread group of picoeukaryotes, formerly known as 'picobiliphytes'.

    Directory of Open Access Journals (Sweden)

    Ramkumar Seenivasan

    Full Text Available In 2007, a novel, putatively photosynthetic picoeukaryotic lineage, the 'picobiliphytes', with no known close eukaryotic relatives, was reported from 18S environmental clone library sequences and fluorescence in situ hybridization. Although single cell genomics later showed these organisms to be heterotrophic rather than photosynthetic, until now this apparently widespread group of pico-(or nano-eukaryotes has remained uncultured and the organisms could not be formally recognized. Here, we describe Picomonas judraskeda gen. et sp. nov., from marine coastal surface waters, which has a 'picobiliphyte' 18S rDNA signature. Using vital mitochondrial staining and cell sorting by flow cytometry, a single cell-derived culture was established. The cells are biflagellate, 2.5-3.8×2-2.5 µm in size, lack plastids and display a novel stereotypic cycle of cell motility (described as the "jump, drag, and skedaddle"-cycle. They consist of two hemispherical parts separated by a deep cleft, an anterior part that contains all major cell organelles including the flagellar apparatus, and a posterior part housing vacuoles/vesicles and the feeding apparatus, both parts separated by a large vacuolar cisterna. From serial section analyses of cells, fixed at putative stages of the feeding cycle, it is concluded that cells are not bacterivorous, but feed on small marine colloids of less than 150 nm diameter by fluid-phase, bulk flow endocytosis. Based on the novel features of cell motility, ultrastructure and feeding, and their isolated phylogenetic position, we establish a new phylum, Picozoa, for Picomonas judraskeda, representing an apparently widespread and ecologically important group of heterotrophic picoeukaryotes, formerly known as 'picobiliphytes'.

  15. Cattle Candidate Genes for Milk Production Traits

    OpenAIRE

    Kadlec,Tomáš

    2012-01-01

    The aim of this thesis is to make an overview of important candidate genes affecting milk yield and milk quality parameters, with an emphasis on genes associated with the quantity and quality of milk proteins and milk fat.

  16. Evaluating historical candidate genes for schizophrenia

    DEFF Research Database (Denmark)

    Farrell, M S; Werge, T; Sklar, P;

    2015-01-01

    Prior to the genome-wide association era, candidate gene studies were a major approach in schizophrenia genetics. In this invited review, we consider the current status of 25 historical candidate genes for schizophrenia (for example, COMT, DISC1, DTNBP1 and NRG1). The initial study for 24 of these...... genes explicitly evaluated common variant hypotheses about schizophrenia. Our evaluation included a meta-analysis of the candidate gene literature, incorporation of the results of the largest genomic study yet published for schizophrenia, ratings from informed researchers who have published on these...... genes, and ratings from 24 schizophrenia geneticists. On the basis of current empirical evidence and mostly consensual assessments of informed opinion, it appears that the historical candidate gene literature did not yield clear insights into the genetic basis of schizophrenia. A likely reason why...

  17. Scattering Properties of Candidate Planetary Regolith Materials

    Science.gov (United States)

    Nelson, R. M.; Smythe, W. D.; Hapke, B. W.; Hale, A. S.; Piatek, J. A.

    2001-01-01

    The laboratory investigation of the scattering properties of candidate planetary regolith materials is an important technique for understanding the physical properties of a planetary regolith. Additional information is contained in the original extended abstract.

  18. Characterization of nanoparticles as candidate reference materials

    International Nuclear Information System (INIS)

    We report the characterization of three different nanoparticles (silica, silver and multi-walled carbon nanotubes) as candidate reference material. We focus our analysis on the size distribution of those particles as measured by different microscopy techniques. (author)

  19. Characterization of nanoparticles as candidate reference materials

    Energy Technology Data Exchange (ETDEWEB)

    Martins Ferreira, E.H.; Robertis, E. de; Landi, S.M.; Gouvea, C.P.; Archanjo, B.S.; Almeida, C.A.; Araujo, J.R. de; Kuznetsov, O.; Achete, C.A., E-mail: smlandi@inmetro.gov.br [Instituto Nacional de Metrologia, Qualidade e Tecnologia (INMETRO), Rio de Janeiro, RJ (Brazil)

    2013-07-01

    We report the characterization of three different nanoparticles (silica, silver and multi-walled carbon nanotubes) as candidate reference material. We focus our analysis on the size distribution of those particles as measured by different microscopy techniques. (author)

  20. 76 FR 4896 - Call for Candidates

    Science.gov (United States)

    2011-01-27

    ... accepted accounting principles for federal government entities. Generally, non-federal Board members are... From the Federal Register Online via the Government Publishing Office FEDERAL ACCOUNTING STANDARDS ADVISORY BOARD Call for Candidates AGENCY: Federal Accounting Standards Advisory Board. ACTION:...

  1. 76 FR 36130 - Call for Candidates

    Science.gov (United States)

    2011-06-21

    ... establish generally accepted accounting principles for federal government entities. Generally, non- federal... From the Federal Register Online via the Government Publishing Office FEDERAL ACCOUNTING STANDARDS ADVISORY BOARD Call for Candidates AGENCY: Federal Accounting Standards Advisory Board. ACTION: Request...

  2. Vaccine candidates for malaria: what's new?

    Science.gov (United States)

    Takashima, Eizo; Morita, Masayuki; Tsuboi, Takafumi

    2016-01-01

    Although it is more than a decade since the parasite genome information was obtained, standardized novel genome-wide selection/prioritization strategies for candidacy of malaria vaccine antigens are still sought. In the quest to systematically identify candidates, it is impossible to overemphasize the usefulness of wheat germ cell-free technology in expressing quality proteins for the post-genome vaccine candidate discovery. PMID:26559316

  3. Cardiac evaluation of liver transplant candidates

    Institute of Scientific and Technical Information of China (English)

    Mercedes Susan Mandell; JoAnn Lindenfeld; Mei-Yung Tsou; Michael Zimmerman

    2008-01-01

    Physicians previously thought that heart disease was rare in patients with end stage liver disease. However, recent evidence shows that the prevalence of ischemic heart disease and cardiomyopathy is increased in transplant candidates compared to most other surgical candidates. Investigators estimate that up to 26% of all liver transplant candidates have at least one critical coronary artery stenosis and that at least half of these patients will die perioperatively of cardiac complications. Cardiomyopathy also occurs in greater frequency. While all patients with advanced cardiac disease have defects in cardiac performance, a larger than expected number of patients have classical findings of dilated, restrictive and hypertropic cardiomyopathy. This may explain why up to 56% of patients suffer from hypoxemia due to pulmonary edema following transplant surgery. There is considerable controversy on how to screen transplant candidates for the presence of heart disease. Questions focus upon, which patients should be screened and what tests should be used. This review examines screening strategies for transplant candidates and details the prognostic value of common tests used to identify ischemic heart disease. We also review the physiological consequences of cardiomyopathy in transplant candidates and explore the specific syndrome of "cirrhotic cardiomyopathy".

  4. Lactivibrio alcoholicus gen. nov., sp. nov., an anaerobic, mesophilic, lactate-, alcohol-, carbohydrate- and amino-acid-degrading bacterium in the phylum Synergistetes.

    Science.gov (United States)

    Qiu, Yan-Ling; Hanada, Satoshi; Kamagata, Yoichi; Guo, Rong-Bo; Sekiguchi, Yuji

    2014-06-01

    A mesophilic, obligately anaerobic, lactate-, alcohol-, carbohydrate- and amino-acid- degrading bacterium, designated strain 7WAY-8-7(T), was isolated from an upflow anaerobic sludge blanket reactor treating high-strength organic wastewater from isomerized sugar production processes. Cells of strain 7WAY-8-7(T) were motile, curved rods (0.7-1.0×5.0-8.0 µm). Spore formation was not observed. The strain grew optimally at 37 °C (range for growth was 25-40 °C) and pH 7.0 (pH 6.0-7.5), and could grow fermentatively on yeast extract, glucose, ribose, xylose, malate, tryptone, pyruvate, fumarate, Casamino acids, serine and cysteine. The main end-products of glucose fermentation were acetate and hydrogen. In co-culture with the hydrogenotrophic methanogen Methanospirillum hungatei DSM 864(T), strain 7WAY-8-7(T) could utilize lactate, glycerol, ethanol, 1-propanol, 1-butanol, L-glutamate, alanine, leucine, isoleucine, valine, histidine, asparagine, glutamine, arginine, lysine, threonine, 2-oxoglutarate, aspartate and methionine. A Stickland reaction was not observed with some pairs of amino acids. Yeast extract was required for growth. Nitrate, sulfate, thiosulfate, elemental sulfur, sulfite and Fe (III) were not used as terminal electron acceptors. The G+C content of the genomic DNA was 61.4 mol%. 16S rRNA gene sequence analysis revealed that the isolate belongs to the uncultured environmental clone clade (called 'PD-UASB-13' in the Greengenes database) in the bacterial phylum Synergistetes, showing less than 90% sequence similarity with closely related described species such as Aminivibrio pyruvatiphilus and Aminobacterium colombiense (89.7% and 88.7%, respectively). The major cellular fatty acids were iso-C(13 : 0), iso-C(15 : 0), anteiso-C(15 : 0), C(18 : 1), C(19 : 1), C(20 : 1) and C(21 : 1). A novel genus and species, Lactivibrio alcoholicus gen. nov., sp. nov. is proposed to accommodate strain 7WAY-8-7(T) ( = JCM 17151(T

  5. Evaluating historical candidate genes for schizophrenia.

    Science.gov (United States)

    Farrell, M S; Werge, T; Sklar, P; Owen, M J; Ophoff, R A; O'Donovan, M C; Corvin, A; Cichon, S; Sullivan, P F

    2015-05-01

    Prior to the genome-wide association era, candidate gene studies were a major approach in schizophrenia genetics. In this invited review, we consider the current status of 25 historical candidate genes for schizophrenia (for example, COMT, DISC1, DTNBP1 and NRG1). The initial study for 24 of these genes explicitly evaluated common variant hypotheses about schizophrenia. Our evaluation included a meta-analysis of the candidate gene literature, incorporation of the results of the largest genomic study yet published for schizophrenia, ratings from informed researchers who have published on these genes, and ratings from 24 schizophrenia geneticists. On the basis of current empirical evidence and mostly consensual assessments of informed opinion, it appears that the historical candidate gene literature did not yield clear insights into the genetic basis of schizophrenia. A likely reason why historical candidate gene studies did not achieve their primary aims is inadequate statistical power. However, the considerable efforts embodied in these early studies unquestionably set the stage for current successes in genomic approaches to schizophrenia. PMID:25754081

  6. Ichthyobacterium seriolicida gen. nov., sp. nov., a member of the phylum 'Bacteroidetes', isolated from yellowtail fish (Seriola quinqueradiata) affected by bacterial haemolytic jaundice, and proposal of a new family, Ichthyobacteriaceae fam. nov.

    Science.gov (United States)

    Takano, Tomokazu; Matsuyama, Tomomasa; Sakai, Takamitsu; Nakamura, Yoji; Kamaishi, Takashi; Nakayasu, Chihaya; Kondo, Hidehiro; Hirono, Ikuo; Fukuda, Yutaka; Sorimachi, Minoru; Iida, Takaji

    2016-02-01

    A novel Gram-stain-negative, rod-shaped (0.3 × 4-6 μm), non-flagellated, aerobic strain with gliding motility, designated JBKA-6T, was isolated in 1991 from a yellowtail fish, Seriola quinqueradiata, showing symptoms of bacterial haemolytic jaundice. 16S rRNA gene sequence analysis showed that strain JBKA-6T was related most closely to members of the family Flavobacteriaceae in the phylum 'Bacteroidetes'. Furthermore, based on gyrB gene sequence analysis, JBKA-6T was classified into a single clade within the order Flavobacteriales, which was distinct from the known clades of the families Flavobacteriaceae, Blattabacteriaceae and Cryomorphaceae. The predominant isoprenoid quinone was identified as MK-6 (97.9 %), and the major cellular fatty acids (>10 %) were C14 : 0 and iso-C15 : 0. The main polar lipids were phosphatidylethanolamine, three unidentified phospholipids, two unidentified aminophospholipids and two unidentified polar lipids. The DNA G+C content of JBKA-6T, as derived from its whole genome, was 33.4 mol%. The distinct phylogenetic position and phenotypic traits of strain JBKA-6T distinguish it from all other described species of the phylum 'Bacteroidetes', and therefore it was concluded that strain JBKA-6T represents a new member of the phylum 'Bacteroidetes', and the name Ichthyobacterium seriolicida gen. nov., sp. nov. is proposed. The type strain of Ichthyobacterium seriolicida is JBKA-6T ( = ATCC BAA-2465T = JCM 18228T). We also propose that Icthyobacterium gen. nov. is the type genus of a novel family, Ichthyobacteriaceae fam. nov. PMID:26554606

  7. Closing the door on dark matter candidates

    International Nuclear Information System (INIS)

    Cold dark matter candidates - if they exist - will be present in, and perhaps dominate the mass density of, the halo of our Galaxy. As they pass the vicinity of the Sun, such halo particles will be focussed gravitationally, pass through the Sun and - occasionally - be captured and accumulate in the solar core. When the density in the core of the Sun of dark matter candidates has increased sufficiently, they will annihilate and among the annihilation products will be energetic (≥ GeV) ''ordinary'' neutrinos (νe, νμ, ντ) which are detectable in deep underground experiments. The event rates in such detectors from the capture and annihilation of various dark matter candidates (Dirac and Majorana neutrinos, Sneutrinos and Photinos) are presented and it is shown how comparison with data may lead to constraints on (or, the exclusion of) the masses of these particles. 6 refs

  8. Cattle Candidate Genes for Meat Production Traits

    OpenAIRE

    Bláhová, Alice

    2013-01-01

    The objective of this study was to compile a summary of the most important candidate genes for meat production. The studied genes were: GH, GHR, MSTN, MyoD family, leptin, IGF, TG5, SCD, DGAT and STAT5A. Growth hormone (GH) is involved in physiological processes of growth and metabolism. Growth hormone receptor (GHR) has been proposed as a candidate gene for meat production in cattle. Myostatin is a significant marker. It affects the amount of muscle, reduces marbling and elevate meat tendern...

  9. Promoting Team Leadership Skills in Doctoral Candidates

    Science.gov (United States)

    Suleiman, Mahmoud; Whetton, Danny

    2014-01-01

    Doctoral programs can serve as an optimal opportunity for candidates to engage in tasks and activities to transform them and their schools. The paradigm shifts in such preparation involve moving from sitting and getting to making and taking. Most importantly, it requires building leadership skills and styles necessary to bring about desired change…

  10. Secondary Teacher Candidates' Lesson Planning Learning

    Science.gov (United States)

    Santoyo, Christina; Zhang, Shaoan

    2016-01-01

    Teacher candidates (TCs) use clinical experiences to enact concepts taught in their university courses; therefore field experiences may be the most important component of teacher preparation (Hammerness et al., 2005). TCs require support and guidance as they learn to adapt curriculum materials for effective use in the classroom (Davis, 2006). They…

  11. The Responsibility Education of Teacher Candidates

    Science.gov (United States)

    Toremen, Fatih

    2011-01-01

    In this study, it was aimed to take the views and suggestions of academicians working at the faculty of education on what can be done about teacher candidates' responsibility education. This study was designed on the basis of qualitative research approach and purposive sampling method was used. Data were collected by unstructured interview method…

  12. Microlensing Binaries with Candidate Brown Dwarf Companions

    DEFF Research Database (Denmark)

    Shin, I.-G; Han, C.; Gould, A.;

    2012-01-01

    Brown dwarfs are important objects because they may provide a missing link between stars and planets, two populations that have dramatically different formation histories. In this paper, we present the candidate binaries with brown dwarf companions that are found by analyzing binary microlensing ...

  13. FAME's Search for Extrasolar Planet Candidates

    Science.gov (United States)

    Johnston, K.

    FAME is a five year survey mission to observe the positions, proper motions, and parallaxes of 40,000,000 stars down to 15th magnitude with accuracies of 50 microarcseconds at 9th magnitude. In addition to producing an astrometric and photometric catalog unparalleled for its accuracy and size, the survey will provide significant astrophysics results and search for extrasolar planet candidates.

  14. Query by image example: The CANDID approach

    Energy Technology Data Exchange (ETDEWEB)

    Kelly, P.M.; Cannon, M. [Los Alamos National Lab., NM (United States). Computer Research and Applications Group; Hush, D.R. [Univ. of New Mexico, Albuquerque, NM (United States). Dept. of Electrical and Computer Engineering

    1995-02-01

    CANDID (Comparison Algorithm for Navigating Digital Image Databases) was developed to enable content-based retrieval of digital imagery from large databases using a query-by-example methodology. A user provides an example image to the system, and images in the database that are similar to that example are retrieved. The development of CANDID was inspired by the N-gram approach to document fingerprinting, where a ``global signature`` is computed for every document in a database and these signatures are compared to one another to determine the similarity between any two documents. CANDID computes a global signature for every image in a database, where the signature is derived from various image features such as localized texture, shape, or color information. A distance between probability density functions of feature vectors is then used to compare signatures. In this paper, the authors present CANDID and highlight two results from their current research: subtracting a ``background`` signature from every signature in a database in an attempt to improve system performance when using inner-product similarity measures, and visualizing the contribution of individual pixels in the matching process. These ideas are applicable to any histogram-based comparison technique.

  15. Candidal Leukoplakia on Patient with Removable Denture

    Directory of Open Access Journals (Sweden)

    Shiril Paskalis

    2013-07-01

    Full Text Available Candida infection is a common problem in patients using removable dentures, with the most frequent type is denture stomatitis. But other type of candidal infection could also happen in these patients, such as candidal leukoplakia. We reported a 61 years old female patient who complained a painful lesion under her lower removable denture. Oral examination revealed white plaque that could not be rubbed over an ulcer on the lingual part of alveolar processes under the lower removable denture plate, and also an erythematous area on palatum durum above the upper full denture. The patient was suspected to have candidal leukoplakia on the lingual part of the mandible and denture stomatitis on the palate area. The treatment consisted of nystatin oral suspension, chlorhexidine solution, multivitamins, along with denture replacement and oral health education. The entire lesion resolved within 2 months therapy. Candidal infection treatment on denture patient needs not only medication or denture replacement, but also patient compliance to achieve maximal result.

  16. Social Justice Perceptions of Teacher Candidates

    Science.gov (United States)

    Turhan, Muhammed

    2010-01-01

    This study aims to determine the social justice perceptions of teacher candidates being trained in an education faculty. For this purpose, national and international literature was reviewed by the researcher and a 32-item questionnaire was developed and implemented on 237 senior year education faculty students. Data from the questionnaires were…

  17. Gallium-67 imaging in candidal esophagitis

    Energy Technology Data Exchange (ETDEWEB)

    Rundback, J.H.; Goldfarb, C.R.; Ongseng, F. (Beth Israel Medical Center, New York, NY (USA))

    1990-01-01

    Ga-67 scanning has been used to evaluate esophageal carcinoma. It has demonstrated candidal infection in other body sites and, in one previous case, in the esophagus. The authors present a case of diffuse esophageal uptake of Ga-67 in esophageal candidiasis.

  18. Gallium-67 imaging in candidal esophagitis

    International Nuclear Information System (INIS)

    Ga-67 scanning has been used to evaluate esophageal carcinoma. It has demonstrated candidal infection in other body sites and, in one previous case, in the esophagus. The authors present a case of diffuse esophageal uptake of Ga-67 in esophageal candidiasis

  19. 22 CFR 11.8 - Travel expenses of candidates.

    Science.gov (United States)

    2010-04-01

    ... 22 Foreign Relations 1 2010-04-01 2010-04-01 false Travel expenses of candidates. 11.8 Section 11... Travel expenses of candidates. The travel and other personal expenses of candidates incurred in... Department may issue round-trip invitational travel orders to bring candidates to Washington at...

  20. Candidate marketing takes the guessing game out of choosing employers.

    Science.gov (United States)

    Russell, Judith; Havel, Stacey

    2010-01-01

    Candidate marketing builds a foundation for relationships between employers and potential employees. Additionally, candidate marketing differentiates organizations in the marketplace. Organizations using candidate marketing to communicate the employer brand can expect a higher quality of candidates, and new employees are better prepared for the work environment and culture. Today, organizations can use a variety of integrated tools and techniques to communicate and build relationships with candidates. Candidate marketing demonstrates an organization's willingness towards transparency, and ability to invite open conversations between candidates and members of the organizations. PMID:20672542

  1. Candidate Species Selection: Cultural and Photosynthetic Aspects

    Science.gov (United States)

    Mitchell, C. A.

    1982-01-01

    Cultural information is provided for a data base that will be used to select candidate crop species for a controlled ecological life support system (CELSS). Lists of food crops which will satisfy most nutritional requirements of humans and also fit within the scope of cultural restrictions that logically would apply to a closed, regenerating system were generated. Cultural and environmental conditions that will allow the most rapid production of edible biomass from candidate species in the shortest possible time are identified. Cultivars which are most productive in terms of edible biomass production by (CE) conditions, and which respond to the ever-closed approach to optimization realized by each shortened production cycle are selected. The experimental approach with lettuce was to grow the crop hydroponically in a growth chamber and to manipulate such variables as light level and duration, day/night temperature, and nutrient form and level in the solution culture.

  2. New drug candidates in tuberculosis treatment

    Directory of Open Access Journals (Sweden)

    Begüm Evranos Aksöz

    2014-12-01

    makes them quit the treatment. From these problems emerges the need for development of effective new drugs, with smaller duration of therapy, less side effects and without the problem of resistance. After a long period such as 40 years, a new drug molecule bedaquiline was approved in December 2012 by FDA while the drug was in phase II research. Bedaquiline will be used in multidrug resistant tuberculosis therapy. When the chemical structures of bedaquilline and other candidate drugs were examined, the structures such as diarylquinoline, oxazolidinone, nitroimidazole, ethylenediamine drew attention. These common structures will be directive in designing new molecules. In this review, bedaquiline and other candidate drug molecules such as sutezolide, linezolide, PA-824, delamanide, rifapentine, gatifloxacin, moxifloxacin, BTZ-043, TBA-354, CPZEN-45, DC-159a, Q201, SQ-609, SQ-641 were mentioned.

  3. Optical Nova Candidate in M 31

    Science.gov (United States)

    Henze, M.; Burwitz, V.; Pietsch, W.; Updike, A.; Milne, P.; Williams, G.; Hartmann, D. H.

    2008-06-01

    We report the discovery of an optical nova candidate in M 31 on two 11x60s stacked R filter CCD images obtained with the robotic 60cm telescope with an E2V CCD (2kx2k) of the Livermore Optical Transient Imaging System (Super-LOTIS, located at Steward Observatory, Kitt Peak, Arizona, USA). The object was first detected on 2008 June 14.46 and 16.46 UT with respective magnitudes of 18.0 and 17.7. The position for the nova candidate is RA = 00h42m37.72s, Dec = +41d12'30.0"(J2000, accuracy of 0.3"), which is 1'14" west and 3'39" south of the core of M 31. All magnitudes given are obtained from a photometric solution using R magnitudes of the Local Group Survey M 31 catalogue (Massey et al.

  4. Spectroscopic follow up of Kepler planet candidates

    DEFF Research Database (Denmark)

    Latham..[], D. W.; Cochran, W. D.; Marcy, G.W.;

    2010-01-01

    Spectroscopic follow-up observations play a crucial role in the confirmation and characterization of transiting planet candidates identified by Kepler. The most challenging part of this work is the determination of radial velocities with a precision approaching 1 m/s in order to derive masses from...... spectroscopic orbits. The most precious resource for this work is HIRES on Keck I, to be joined by HARPS-North on the William Herschel Telescope when that new spectrometer comes on line in two years. Because a large fraction of the planet candidates are in fact stellar systems involving eclipsing stars and not...... planets, our strategy is to start with reconnaissance spectroscopy using smaller telescopes, to sort out and reject as many of the false positives as possible before going to Keck. During the first Kepler observing season in 2009, more than 100 nights of telescope time were allocated for this work, using...

  5. Reducing stigma and discrimination: Candidate interventions

    OpenAIRE

    Kassam Aliya; Brohan Elaine; Thornicroft Graham; Lewis-Holmes Elanor

    2008-01-01

    Abstract This paper proposes that stigma in relation to people with mental illness can be understood as a combination of problems of knowledge (ignorance), attitudes (prejudice) and behaviour (discrimination). From a literature review, a series of candidate interventions are identified which may be effective in reducing stigmatisation and discrimination at the following levels: individuals with mental illness and their family members; the workplace; and local, national and international. The ...

  6. Tantalum oxide coatings as candidate environmental barriers

    OpenAIRE

    Moldovan, Monica; Weyant, C. M.; Johnson, D. Lynn; Faber, K. T.

    2004-01-01

    Tantalum (Ta) oxide, due to its high-temperature capabilities and thermal expansion coefficient similar to silicon nitride, is a promising candidate for environmental barriers for silicon (Si) nitride-based ceramics. This paper focuses on the development of plasma-sprayed Ta oxide as an environmental barrier coating for silicon nitride. Using a D-optimal design of experiments, plasma-spray processing variables were optimized to maximize coating density. The effect of processing variables on c...

  7. Sensitive Radio Survey of Obscured Quasar Candidates

    CERN Document Server

    Alexandroff, Rachael M; van Velzen, Sjoert; Greene, Jenny E; Strauss, Michael A

    2016-01-01

    We study the radio properties of moderately obscured quasars over a range of redshifts to understand the role of radio activity in accretion using the Jansky Very Large Array (JVLA) at 6.0GHz and 1.4GHz. Our z~2.5 sample consists of optically-selected obscured quasar candidates, all of which are radio-quiet, with typical radio luminosities of $\

  8. Nonclinical Development of BCG Replacement Vaccine Candidates

    OpenAIRE

    Bernd Eisele; Martin Gengenbacher; Reginald Kidd; David McCown; Sheldon Morris; Steven Derrick; David Hokey; Dominick Laddy; Rosemary Chang; Megan Fitzpatrick; Leander Grode; Kamalakannan Velmurugan; Stefan H. E. Kaufmann; John Fulkerson; Brennan, Michael J.

    2013-01-01

    The failure of current Mycobacterium bovis bacille Calmette–Guérin (BCG) vaccines, given to neonates to protect against adult tuberculosis and the risk of using these live vaccines in HIV-infected infants, has emphasized the need for generating new, more efficacious and safer replacement vaccines. With the availability of genetic techniques for constructing recombinant BCG (rBCG) strains containing well-defined gene deletions or insertions, new vaccine candidates are under evaluation at both ...

  9. Optical durability testing of candidate solar mirrors

    Energy Technology Data Exchange (ETDEWEB)

    Jorgensen, G.; Kennedy, C.; King, D.; Terwilliger, K.

    2000-03-24

    Durability testing of a variety of candidate solar reflector materials at outdoor test sites and in laboratory accelerated weathering chambers is the main activity within the Advanced Materials task of the Concentrated Solar Power (CSP) Program. Outdoor exposure testing (OET) at up to eight outdoor, worldwide exposure sites has been underway for several years. This includes collaboration under the auspices of the International Energy Agency (IEA) Solar Power and Chemical Energy Systems (SolarPACES) agreement. Outdoor sites are fully instrumented in terms of monitoring meteorological conditions and solar irradiance. Candidate materials are optically characterized prior to being subjected to exposure in real and simulated weathering environments. Optical durability is quantified by periodically re-measuring hemispherical and specular reflectance as a function of exposure time. By closely monitoring the site- and time-dependent environmental stress conditions experienced by the material samples, site-dependent loss of performance may be quantified. In addition, accelerated exposure testing (AET) of these materials in parallel under laboratory-controlled conditions may permit correlating the outdoor results with AET, and subsequently predicting service lifetimes. Test results to date for a large number of candidate solar reflector materials are presented in this report. Acronyms are defined. Based upon OET and AET results to date, conclusions can be drawn about the optical durability of the candidate reflector materials. The optical durability of thin glass, thick glass, and two metallized polymers can be characterized as excellent. The all-polymeric construction, several of the aluminized reflectors, and a metallized polymer can be characterized as having intermediate durability and require further improvement, testing and evaluation, or both.

  10. Comparing Candidate Selection : A Feminist Institutionalist Approach

    OpenAIRE

    Bjarnegard, Elin; Kenny, Meryl

    2016-01-01

    This contribution evaluates the theoretical and methodological challenges ofresearching the gendered dynamics of candidate selection in comparativeperspective. It argues that comparative studies should take into account not only thegendered nature of political parties and their wider institutional context, but mustalso investigate the informal aspects of the selection process and their genderedconsequences. The article explores these dynamics by revisiting original in-depthresearch on the can...

  11. Various Approaches for Targeting Quasar Candidates

    Science.gov (United States)

    Zhang, Y.; Zhao, Y.

    2015-09-01

    With the establishment and development of space-based and ground-based observational facilities, the improvement of scientific output of high-cost facilities is still a hot issue for astronomers. The discovery of new and rare quasars attracts much attention. Different methods to select quasar candidates are in bloom. Among them, some are based on color cuts, some are from multiwavelength data, some rely on variability of quasars, some are based on data mining, and some depend on ensemble methods.

  12. MANAGEMENT OF ALLOSENSITIZED CARDIAC TRANSPLANT CANDIDATES

    OpenAIRE

    Velez, Mauricio; Johnson, Maryl R.

    2009-01-01

    Cardiac transplantation remains the best treatment in advanced heart failure patients with a high risk of death. However, an inadequate supply of donor hearts decreases the likelihood of transplantation for many patients. Ventricular assist devices (VAD) are being increasingly used as a bridge to transplant in patients who may not survive long enough to receive a heart. This expansion in VAD use has been associated with increasing rates of allosensitization in cardiac transplant candidates. A...

  13. Critical Thinking Tendencies of Music Teacher Candidates

    OpenAIRE

    Duygu PİJİ KÜÇÜK; Yusuf Barış UZUN

    2013-01-01

    In this study, determining critical thinking and education levels, which are in sub-dimensions, of music teacher candidates, determining critical thinking tendency and the relations between sub dimensions and detecting if or if not critical thinking tendency creates a difference in terms of gender, class and what type of school they graduated from are aimed. Work group composes of 274 students being educated in the Departments of Music Education GSEB of Education Faculty of Bolu Abant İzzet B...

  14. Preoperative Anxiety in Candidates for Heart Surgery

    OpenAIRE

    Fathi, Mehdi; Alavi, Seyed Mostafa; Joudi, Marjan; Joudi, Mitra; Mahdikhani, Helia; Ferasatkish, Rasool; Bakhshandeh, Houman; Jabbari Nooghabi, Mehdi

    2014-01-01

    Objective: The goal of this study was to evaluate preoperative anxiety and its predisposing factors in a group of adult patients who were candidate for any kind of heart surgery. Methods: We evaluated preoperative anxiety in 300 patients undergoing heart surgery whose ages ranged between 18-65 years. Relationship of probable demographic factors like gender, educational level, marital status, number of children, family support, opium addiction, occupational status, and left ventricular ejectio...

  15. Alcoholism and Alternative Splicing of Candidate Genes

    OpenAIRE

    Toshikazu Sasabe; Shoichi Ishiura

    2010-01-01

    Gene expression studies have shown that expression patterns of several genes have changed during the development of alcoholism. Gene expression is regulated not only at the level of transcription but also through alternative splicing of pre-mRNA. In this review, we discuss some of the evidence suggesting that alternative splicing of candidate genes such as DRD2 (encoding dopamine D2 receptor) may form the basis of the mechanisms underlying the pathophysiology of alcoholism. These reports sugg...

  16. Nuclear safety in EU candidate countries

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2000-10-01

    Nuclear safety in the candidate countries to the European Union is a major issue that needs to be addressed in the framework of the enlargement process. Therefore WENRA members considered it was their duty to offer their technical assistance to their Governments and the European Union Institutions. They decided to express their collective opinion on nuclear safety in those candidate countries having at least one nuclear power plant: Bulgaria, the Czech Republic, Hungary, Lithuania, Romania, Slovakia and Slovenia. The report is structured as follows: A foreword including background information, structure of the report and the methodology used, General conclusions of WENRA members reflecting their collective opinion, For each candidate country, an executive summary, a chapter on the status of the regulatory regime and regulatory body, and a chapter on the nuclear power plant safety status. Two annexes are added to address the generic safety characteristics and safety issues for RBMK and VVER plants. The report does not cover radiation protection and decommissioning issues, while safety aspects of spent fuel and radioactive waste management are only covered as regards on-site provisions. In order to produce this report, WENRA used different means: For the chapters on the regulatory regimes and regulatory bodies, experts from WENRA did the work. For the chapters on nuclear power plant safety status, experts from WENRA and from French and German technical support organisations did the work. Taking into account the contents of these chapters, WENRA has formulated its general conclusions in this report.

  17. Nuclear safety in EU candidate countries

    International Nuclear Information System (INIS)

    Nuclear safety in the candidate countries to the European Union is a major issue that needs to be addressed in the framework of the enlargement process. Therefore WENRA members considered it was their duty to offer their technical assistance to their Governments and the European Union Institutions. They decided to express their collective opinion on nuclear safety in those candidate countries having at least one nuclear power plant: Bulgaria, the Czech Republic, Hungary, Lithuania, Romania, Slovakia and Slovenia. The report is structured as follows: A foreword including background information, structure of the report and the methodology used, General conclusions of WENRA members reflecting their collective opinion, For each candidate country, an executive summary, a chapter on the status of the regulatory regime and regulatory body, and a chapter on the nuclear power plant safety status. Two annexes are added to address the generic safety characteristics and safety issues for RBMK and VVER plants. The report does not cover radiation protection and decommissioning issues, while safety aspects of spent fuel and radioactive waste management are only covered as regards on-site provisions. In order to produce this report, WENRA used different means: For the chapters on the regulatory regimes and regulatory bodies, experts from WENRA did the work. For the chapters on nuclear power plant safety status, experts from WENRA and from French and German technical support organisations did the work. Taking into account the contents of these chapters, WENRA has formulated its general conclusions in this report

  18. Optical Nova Candidates in M 31

    Science.gov (United States)

    Henze, M.; Burwitz, V.; Pietsch, W.; Updike, A.; Milne, P.; Williams, G.; Hartmann, D. H.

    2008-06-01

    We report the discovery of an optical nova candidate in M 31 on two 11x60s stacked R filter CCD images obtained with the robotic 60cm telescope with an E2V CCD (2kx2k) of the Livermore Optical Transient Imaging System (Super-LOTIS, located at Steward Observatory, Kitt Peak, Arizona, USA). The object was first detected on 2008 June 06.47 and 07.47 UT with respective magnitudes of 18.0 and 17.9.

  19. Blend Analysis of HATNet Transit Candidates

    Directory of Open Access Journals (Sweden)

    Bakos G.Á.

    2011-02-01

    Full Text Available Candidate transiting planet systems discovered by wide-field groundbased surveys must go through an intensive follow-up procedure to distinguish the true transiting planets from the much more common false positives. Especially pernicious are configurations of three or more stars which produce radial velocity and light curves that are similar to those of single stars transited by a planet. In this contribution we describe the methods used by the HATNet team to reject these blends, giving a few illustrative examples.

  20. Dark Matter and its Particle Candidates

    CERN Document Server

    Bottino, A

    1999-01-01

    In these lectures we first briefly review the main observational facts which imply that most part of matter in the Universe is not visible and some recent intriguing experimental data which would point to a significant contribution to Omega due to a cosmological constant. We subsequently discuss some particle candidates for dark matter, with particular emphasis for the neutralino. We present the main properties of this particle, also in the light of the most recent experimental results in direct search for relic particles; furthermore, we discuss the perspectives for their indirect searches.

  1. Assessment of candidate accident management strategies

    International Nuclear Information System (INIS)

    A set of candidate accident management strategies, whose purpose is to prevent or mitigate in-vessel core damage, were identified from various Nuclear Regulatory Commission (NRC) and industry reports. These strategies have been grouped in this report by the challenges they are intended to meet, and assessed to provide information which may be useful to individual licensees for consideration when they perform their Individual Plant Examinations. Each assessment focused on describing and explaining the strategy, considering its relationship to existing requirements and practices as well as identifying possible associated adverse effects. 10 refs

  2. Reducing stigma and discrimination: Candidate interventions

    Directory of Open Access Journals (Sweden)

    Kassam Aliya

    2008-04-01

    Full Text Available Abstract This paper proposes that stigma in relation to people with mental illness can be understood as a combination of problems of knowledge (ignorance, attitudes (prejudice and behaviour (discrimination. From a literature review, a series of candidate interventions are identified which may be effective in reducing stigmatisation and discrimination at the following levels: individuals with mental illness and their family members; the workplace; and local, national and international. The strongest evidence for effective interventions at present is for (i direct social contact with people with mental illness at the individual level, and (ii social marketing at the population level.

  3. Candidate gene effects on beef quality

    OpenAIRE

    Ekerljung, Marie

    2012-01-01

    The contribution of five candidate genes to the variation in meat tenderness, pH, colour, marbling and water holding capacity (WHC) was analysed in muscle samples from 243 young bulls of Angus, Charolais, Hereford, Limousin, or Simmental breed, raised in Swedish commercial herds. The animals were genotyped for single nucleotide polymorphisms (SNPs) in the genes encoding calpain 1 (CAPN1:c.947G>C), calpastatin, (CAST:c.155C>T), diacylglycerol O-acyltransferase 1 (DGAT1), leptin (UASMS2C>T) a...

  4. Uncovering the nucleus candidate for NGC 253

    CERN Document Server

    Günthardt, G I; Camperi, J A; Díaz, R J; Gomez, P L; Bosch, G; Schirmer, M

    2015-01-01

    NGC253 is the nearest spiral galaxy with a nuclear starburst which becomes the best candidate to study the relationship between starburst and AGN activity. However, this central region is veiled by large amounts of dust, and it has been so far unclear which is the true dynamical nucleus. The near infrared spectroscopy could be advantageous in order to shed light on the true nucleus identity. Using Flamingos-2 at Gemini South we have taken deep K-band spectra along the major axis and through the brightest infrared source. We present evidence showing that the brightest near infrared and mid infrared source in the central region, already known as radio source TH7 and so far considered just a stellar supercluster, in fact, presents various symptoms of a genuine galactic nucleus. Therefore, it should be considered a valid nucleus candidate. It is the most massive compact infrared object in the central region, located at 2.0" of the symmetry center of the galactic bar. Moreover, our data indicate that this object i...

  5. Tracking quintessence and cold dark matter candidates

    International Nuclear Information System (INIS)

    We study the generation of a kination-dominated phase in the context of a quintessential model with an inverse-power-law potential and a Hubble-induced mass term for the quintessence field. The presence of kination is associated with an oscillating evolution of the quintessence field and the barotropic index. We find that, in sizeable regions of the parameter space, a tracker scaling solution can be reached sufficiently early to alleviate the coincidence problem. Other observational constraints originating from nucleosynthesis, the inflationary scale, the present acceleration of the universe and the dark-energy-density parameter can be also met. The impact of this modified kination-dominated phase on the thermal abundance of cold dark matter candidates is also investigated. We find that: 1. the enhancement of the relic abundance of the WIMPs with respect to the standard paradigm, crucially depends on the hierarchy between the freeze-out temperature and the temperature at which the extrema in the evolution of the quintessence field are encountered, and; 2. the relic abundance of e-WIMPs takes its present value close to the temperature at which the earliest extremum of the evolution of the quintessence field occurs and, as a consequence, both gravitinos and axinos arise as natural cold dark matter candidates. In the case of unstable gravitinos, the gravitino constraint can be satisfied for values of the initial temperature well above those required in the standard cosmology

  6. Pulsar Candidates Toward Fermi Unassociated Sources

    CERN Document Server

    Frail, D A; Jagannathan, P; Intema, H T

    2016-01-01

    We report on a search for steep spectrum radio sources within the 95% confidence error ellipses of the Fermi unassociated sources from the Large Array Telescope (LAT). Using existing catalogs and the newly released GMRT all-sky survey at 150 MHz we identify compact radio sources that are bright at MHz frequencies but faint or absent at GHz frequencies. Such steep spectrum radio sources are rare and constitute a sample of pulsar candidates, selected independently of period, dispersion measure, interstellar scattering and orbital parameters. We find point-like, steep spectrum candidates toward 11 Fermi sources. Based on the gamma-ray/radio positional coincidence, the rarity of such radio sources, and the properties of the 3FGL sources themselves, we argue that many of these sources could be pulsars. They may have been missed by previous radio periodicity searches due to interstellar propagation effects or because they lie in an unusually tight binary. If this hypothesis is correct, then renewed gamma-ray and ra...

  7. Nonclinical Development of BCG Replacement Vaccine Candidates.

    Science.gov (United States)

    Velmurugan, Kamalakannan; Grode, Leander; Chang, Rosemary; Fitzpatrick, Megan; Laddy, Dominick; Hokey, David; Derrick, Steven; Morris, Sheldon; McCown, David; Kidd, Reginald; Gengenbacher, Martin; Eisele, Bernd; Kaufmann, Stefan H E; Fulkerson, John; Brennan, Michael J

    2013-01-01

    The failure of current Mycobacterium bovis bacille Calmette-Guérin (BCG) vaccines, given to neonates to protect against adult tuberculosis and the risk of using these live vaccines in HIV-infected infants, has emphasized the need for generating new, more efficacious and safer replacement vaccines. With the availability of genetic techniques for constructing recombinant BCG (rBCG) strains containing well-defined gene deletions or insertions, new vaccine candidates are under evaluation at both the preclinical and clinical stages of development. Since most BCG vaccines in use today were evaluated in clinical trials decades ago and are produced by outdated processes, the development of new BCG vaccines offers a number of advantages that include a modern well-defined manufacturing process along with state-of-the-art evaluation of safety and efficacy in target populations. We provide a description of the preclinical development of two novel rBCGs, VPM1002 that was constructed by adding a modified hly gene coding for the protein listeriolysin O (LLO) from Listeria monocytogenes and AERAS-422, which carries a modified pfoA gene coding for the protein perfringolysin O (PFO) from Clostridium perfringens, and three genes from Mycobacterium tuberculosis. Novel approaches like these should be helpful in generating stable and effective rBCG vaccine candidates that can be better characterized than traditional BCG vaccines. PMID:26343962

  8. Nonclinical Development of BCG Replacement Vaccine Candidates

    Directory of Open Access Journals (Sweden)

    Bernd Eisele

    2013-04-01

    Full Text Available The failure of current Mycobacterium bovis bacille Calmette–Guérin (BCG vaccines, given to neonates to protect against adult tuberculosis and the risk of using these live vaccines in HIV-infected infants, has emphasized the need for generating new, more efficacious and safer replacement vaccines. With the availability of genetic techniques for constructing recombinant BCG (rBCG strains containing well-defined gene deletions or insertions, new vaccine candidates are under evaluation at both the preclinical and clinical stages of development. Since most BCG vaccines in use today were evaluated in clinical trials decades ago and are produced by outdated processes, the development of new BCG vaccines offers a number of advantages that include a modern well-defined manufacturing process along with state-of-the-art evaluation of safety and efficacy in target populations. We provide a description of the preclinical development of two novel rBCGs, VPM1002 that was constructed by adding a modified hly gene coding for the protein listeriolysin O (LLO from Listeria monocytogenes and AERAS-422, which carries a modified pfoA gene coding for the protein perfringolysin O (PFO from Clostridium perfringens, and three genes from Mycobacterium tuberculosis. Novel approaches like these should be helpful in generating stable and effective rBCG vaccine candidates that can be better characterized than traditional BCG vaccines.

  9. Advanced Vaccine Candidates for Lassa Fever

    Directory of Open Access Journals (Sweden)

    Igor S. Lukashevich

    2012-10-01

    Full Text Available Lassa virus (LASV is the most prominent human pathogen of the Arenaviridae. The virus is transmitted to humans by a rodent reservoir, Mastomys natalensis, and is capable of causing lethal Lassa Fever (LF. LASV has the highest human impact of any of the viral hemorrhagic fevers (with the exception of Dengue Fever with an estimated several hundred thousand infections annually, resulting in thousands of deaths in Western Africa. The sizeable disease burden, numerous imported cases of LF in non-endemic countries, and the possibility that LASV can be used as an agent of biological warfare make a strong case for vaccine development. Presently there is no licensed vaccine against LF or approved treatment. Recently, several promising vaccine candidates have been developed which can potentially target different groups at risk. The purpose of this manuscript is to review the LASV pathogenesis and immune mechanisms involved in protection. The current status of pre-clinical development of the advanced vaccine candidates that have been tested in non-human primates will be discussed. Major scientific, manufacturing, and regulatory challenges will also be considered.

  10. Advanced vaccine candidates for Lassa fever.

    Science.gov (United States)

    Lukashevich, Igor S

    2012-11-01

    Lassa virus (LASV) is the most prominent human pathogen of the Arenaviridae. The virus is transmitted to humans by a rodent reservoir, Mastomys natalensis, and is capable of causing lethal Lassa Fever (LF). LASV has the highest human impact of any of the viral hemorrhagic fevers (with the exception of Dengue Fever) with an estimated several hundred thousand infections annually, resulting in thousands of deaths in Western Africa. The sizeable disease burden, numerous imported cases of LF in non-endemic countries, and the possibility that LASV can be used as an agent of biological warfare make a strong case for vaccine development. Presently there is no licensed vaccine against LF or approved treatment. Recently, several promising vaccine candidates have been developed which can potentially target different groups at risk. The purpose of this manuscript is to review the LASV pathogenesis and immune mechanisms involved in protection. The current status of pre-clinical development of the advanced vaccine candidates that have been tested in non-human primates will be discussed. Major scientific, manufacturing, and regulatory challenges will also be considered. PMID:23202493

  11. Advanced Vaccine Candidates for Lassa Fever

    Science.gov (United States)

    Lukashevich, Igor S.

    2012-01-01

    Lassa virus (LASV) is the most prominent human pathogen of the Arenaviridae. The virus is transmitted to humans by a rodent reservoir, Mastomys natalensis, and is capable of causing lethal Lassa Fever (LF). LASV has the highest human impact of any of the viral hemorrhagic fevers (with the exception of Dengue Fever) with an estimated several hundred thousand infections annually, resulting in thousands of deaths in Western Africa. The sizeable disease burden, numerous imported cases of LF in non-endemic countries, and the possibility that LASV can be used as an agent of biological warfare make a strong case for vaccine development. Presently there is no licensed vaccine against LF or approved treatment. Recently, several promising vaccine candidates have been developed which can potentially target different groups at risk. The purpose of this manuscript is to review the LASV pathogenesis and immune mechanisms involved in protection. The current status of pre-clinical development of the advanced vaccine candidates that have been tested in non-human primates will be discussed. Major scientific, manufacturing, and regulatory challenges will also be considered. PMID:23202493

  12. CASE via MS: Ranking Structure Candidates by Mass Spectra

    OpenAIRE

    Kerber, Adalbert; Meringer, Markus; Rücker, Christoph

    2006-01-01

    Two important tasks in computer-aided structure elucidation (CASE) are the generation of candidate structures from a given molecular formula, and the ranking of structure candidates according to compatibility with an experimental spectrum. Candidate ranking with respect to electron impact mass spectra is based on virtual fragmentation of a candidate structure and comparison of the fragments’ isotope distributions against the spectrum of the unknown compound, whence a structure–spectrum compat...

  13. Identity Functions and Empathetic Tendencies of Teacher Candidates

    Science.gov (United States)

    Ay, Alpaslan; Kadi, Aysegul

    2016-01-01

    Objective of this research is to investigate identity functions and empathetic tendencies of teacher candidates. Sample consists of 232 teacher candidates in social studies teacher education. Survey model is preferred to investigate the difference between identity functions and empathetic tendencies of teacher candidates. And also correlational…

  14. Opinions of the Geography Teacher Candidates toward Mind Maps

    Science.gov (United States)

    Seyihoglu, Aysegul

    2013-01-01

    The purpose of this study is to reveal the opinions of the teacher candidates about mind mapping technique used in Geography education of undergraduate program. In this study, the qualitative research techniques were used. The study group consists of 55 teacher candidates. The teacher candidates have been asked for their opinions about the process…

  15. Perceptions of Candidate Teachers about Concept of the Project

    Science.gov (United States)

    Tortop, Hasan Said

    2014-01-01

    The aim of study is to investigate candidate teachers' metaphors about project concept in Turkey. Study group of research is 171 candidate teachers enrolled 2011-2012 educational terms one of the faculty of education in Turkey. Data was obtained from the candidate teachers' completion of the sentence "Project is like ..., because ...".…

  16. A direct molecular link between the autism candidate gene RORa and the schizophrenia candidate MIR137

    Science.gov (United States)

    Devanna, Paolo; Vernes, Sonja C.

    2014-02-01

    Retinoic acid-related orphan receptor alpha gene (RORa) and the microRNA MIR137 have both recently been identified as novel candidate genes for neuropsychiatric disorders. RORa encodes a ligand-dependent orphan nuclear receptor that acts as a transcriptional regulator and miR-137 is a brain enriched small non-coding RNA that interacts with gene transcripts to control protein levels. Given the mounting evidence for RORa in autism spectrum disorders (ASD) and MIR137 in schizophrenia and ASD, we investigated if there was a functional biological relationship between these two genes. Herein, we demonstrate that miR-137 targets the 3'UTR of RORa in a site specific manner. We also provide further support for MIR137 as an autism candidate by showing that a large number of previously implicated autism genes are also putatively targeted by miR-137. This work supports the role of MIR137 as an ASD candidate and demonstrates a direct biological link between these previously unrelated autism candidate genes.

  17. ELECTIONS PENSION FUND 3rd candidate

    CERN Multimedia

    2001-01-01

    ORGANISATION EUROPEENNE POUR LA RECHERCHE NUCLEAIRE CERN EUROPEAN ORGANIZATION FOR NUCLEAR RESEARCH CAISSE DE PENSIONS / PENSION FUND Caisse de Pensions - ELECTIONS - Pension Fund This candidature has been duly registered and is hereby presented in accordance with paragraph 6.h of the Regulations for Elections to the Governing Board of the Pension Fund. Candidate : Name : Hauviller First Name : Claude Dear colleague of CERN and ESO, For the first time, I am standing and requesting your support to become a member of the Governing Board of our Pension Fund. CERN staff member since 1974, I have already carried elective mandates: I have been Delegate to the Staff Council and Member of the Senior Staff Consultative Committee (the Nine). For the majority of us, our Pension Fund is our only social provident scheme and source of retirement income; I believe I can usefully contribute to its successful management and help ensure its balance. Our Fund reaches its majority: soon, there will be more beneficiaries tha...

  18. ELECTIONS PENSION FUND CANDIDATE NR 3

    CERN Multimedia

    2001-01-01

    ORGANISATION EUROPEENNE POUR LA RECHERCHE NUCLEAIRE CERN EUROPEAN ORGANIZATION FOR NUCLEAR RESEARCH CAISSE DE PENSIONS / PENSION FUND Caisse de Pensions - ELECTIONS - Pension Fund This candidature has been duly registered and is hereby presented in accordance with paragraph 6.h of the Regulations for Elections to the Governing Board of the Pension Fund. Candidate : Name : HAUVILLER First Name : Claude Dear colleague of CERN and ESO, For the first time, I am standing and requesting your support to become a member of the Governing Board of our Pension Fund. CERN staff member since 1974, I have already carried elective mandates: I have been Delegate to the Staff Council and Member of the Senior Staff Consultative Committee (the Nine). For the majority of us, our Pension Fund is our only social provident scheme and source of retirement income; I believe I can usefully contribute to its successful management and help ensure its balance. Our Fund reaches its majority: soon, there will be more beneficiaries tha...

  19. Pituitary stem cells: candidates and implications.

    Science.gov (United States)

    Nassiri, Farshad; Cusimano, Michael; Zuccato, Jeff A; Mohammed, Safraz; Rotondo, Fabio; Horvath, Eva; Syro, Luis V; Kovacs, Kalman; Lloyd, Ricardo V

    2013-09-01

    The pituitary is the master endocrine gland of the body. It undergoes many changes after birth, and these changes may be mediated by the differentiation of pituitary stem cells. Stem cells in any tissue source must display (1) pluripotent capacity, (2) capacity for indefinite self-renewal, and (3) a lack of specialization. Unlike neural stem cells identified in the hippocampus and subventricular zone, pituitary stem cells are not associated with one specific cell type. There are many major candidates that are thought to be potential pituitary stem cell sources. This article reviews the evidence for each of the major cell types and discuss the implications of identifying a definitive pituitary stem cell type. PMID:23423660

  20. ELECTIONS PENSION FUND 4th candidate

    CERN Document Server

    2001-01-01

    ORGANISATION EUROPEENNE POUR LA RECHERCHE NUCLEAIRE CERN EUROPEAN ORGANIZATION FOR NUCLEAR RESEARCH CAISSE DE PENSIONS / PENSION FUND Caisse de Pensions - ELECTIONS - Pension Fund This candidature has been duly registered and is hereby presented in accordance with paragraph 6.h of the Regulations for Elections to the Governing Board of the Pension Fund. Candidate : Name : MYERS First Name : Stephen I have been at CERN since 1972, and was elected member of the Governing Board for the first time in 1998. The Governing Board then nominated me to the Investments Committee where I have been a member since the beginning of 1999. Since then I have actively participated in redefining and transforming the investment portfolio in order to improve the overall return and where possible reduce the risk. The portfolio has recently been greatly improved and now allows much simpler more transparent monitoring of our investment. I have also actively participated and hopefully made useful contributions in discussions conc...

  1. ELECTIONS PENSION FUND CANDIDATE NR 4

    CERN Document Server

    2001-01-01

    ORGANISATION EUROPEENNE POUR LA RECHERCHE NUCLEAIRE CERN EUROPEAN ORGANIZATION FOR NUCLEAR RESEARCH CAISSE DE PENSIONS / PENSION FUND Caisse de Pensions - ELECTIONS - Pension Fund This candidature has been duly registered and is hereby presented in accordance with paragraph 6.h of the Regulations for Elections to the Governing Board of the Pension Fund. Candidate : Name : MYERS First Name : Stephen I have been at CERN since 1972, and was elected member of the Governing Board for the first time in 1998. The Governing Board then nominated me to the Investments Committee where I have been a member since the beginning of 1999. Since then I have actively participated in redefining and transforming the investment portfolio in order to improve the overall return and where possible reduce the risk. The portfolio has recently been greatly improved and now allows much simpler more transparent monitoring of our investment. I have also actively participated and hopefully made useful contributions in discussions conc...

  2. Radion Candidate for the LHC Diphoton Resonance

    CERN Document Server

    Bardhan, Debjyoti; Chakraborty, Amit; Maitra, Ushoshi; Raychaudhuri, Sreerup; Samui, Tousik

    2015-01-01

    The recent observation of a modest excess in diphoton final states at the LHC, by both the ATLAS and CMS Collaborations, has sparked off the expected race among theorists to find the right explanation for this proto-resonance, assuming that the signal will survive and not prove to be yet another statistical fluctuation. We carry out a general analysis of this `signal' in the case of a scalar which couples only to pairs of gluons (for production) and photons (for diphoton decay modes), and establish that an explanation of the observed resonance, taken together with the null results of new physics searches in all the other channels, requires a scalar with rather exotic behaviour. We then demonstrate that a fairly simple-minded extension of the minimal Randall-Sundrum model can yield a radion candidate which might reproduce this exotic behaviour.

  3. New potential AChE inhibitor candidates.

    Science.gov (United States)

    de Paula, A A N; Martins, J B L; dos Santos, M L; Nascente, L de C; Romeiro, L A S; Areas, T F M A; Vieira, K S T; Gambôa, N F; Castro, N G; Gargano, R

    2009-09-01

    We have theoretically studied new potential candidates of acetylcholinesterase (AChE) inhibitors designed from cardanol, a non-isoprenoid phenolic lipid of cashew Anacardium occidentale nut-shell liquid. The electronic structure calculations of fifteen molecule derivatives from cardanol were performed using B3LYP level with 6-31G, 6-31G(d), and 6-311+G(2d,p) basis functions. For this study we used the following groups: methyl, acetyl, N,N-dimethylcarbamoyl, N,N-dimethylamine, N,N-diethylamine, piperidine, pyrrolidine, and N,N-methylbenzylamine. Among the proposed compounds we identified that the structures with substitution by N,N-dimethycarbamoyl, N,N-dimethylamine, and pyrrolidine groups were better correlated to rivastigmine, and represent possible AChE inhibitors against Alzheimer disease. PMID:19446931

  4. Halopentacenes: Promising Candidates for Organic Semiconductors

    Institute of Scientific and Technical Information of China (English)

    DU Gong-He; REN Zhao-Yu; GUO Ping; ZHENG Ji-Ming

    2009-01-01

    We introduce polar substituents such as F, Cl, Br into pentacene to enhance the dissolubility in common organic solvents while retaining the high charge-carrier mobilities of pentacene. Geometric structures, dipole moments,frontier molecule orbits, ionization potentials and electron affinities, as well as reorganization energies of those molecules, and of pentacene for comparison, are successively calculated by density functional theory. The results indicate that halopentacenes have rather small reorganization energies (< 0.2 eV), and when the substituents are in position 2 or positions 2 and 9, they are polarity molecules. Thus we conjecture that they can easily be dissolved in common organic solvents, and are promising candidates for organic semiconductors.

  5. UCD Candidates in the Hydra Cluster

    CERN Document Server

    Wehner, Elizabeth

    2007-01-01

    NGC 3311, the giant cD galaxy in the Hydra cluster (A1060), has one of the largest globular cluster systems known. We describe new Gemini GMOS (g',i') photometry of the NGC 3311 field which reveals that the red, metal-rich side of its globular cluster population extends smoothly upward into the mass range associated with the new class of Ultra-Compact Dwarfs (UCDs). We identify 29 UCD candidates with estimated masses > 6x10^6 solar masses and discuss their characteristics. This UCD-like sequence is the most well defined one yet seen, and reinforces current ideas that the high-mass end of the globular cluster sequence merges continuously into the UCD sequence, which connects in turn to the E galaxy structural sequence.

  6. CRISPLD2: a novel NSCLP candidate gene.

    Science.gov (United States)

    Chiquet, Brett T; Lidral, Andrew C; Stal, Samuel; Mulliken, John B; Moreno, Lina M; Arcos-Burgos, Mauricio; Arco-Burgos, Mauricio; Valencia-Ramirez, Consuelo; Blanton, Susan H; Hecht, Jacqueline T

    2007-09-15

    Non-syndromic cleft lip with or without cleft palate (NSCLP) results from the complex interaction between genes and environmental factors. Candidate gene analysis and genome scans have been employed to identify the genes contributing to NSCLP. In this study, we evaluated the 16q24.1 chromosomal region, which has been identified by multiple genome scans as an NSCLP region of interest. Two candidate genes were found in the region: interferon regulatory factor 8 (IRF8) and cysteine-rich secretory protein LCCL domain containing 2 (CRISPLD2). Initially, Caucasian and Hispanic NSCLP multiplex families and simplex parent-child trios were genotyped for single nucleotide polymorphisms (SNPs) in both IRF8 and CRISPLD2. CRISPLD2 was subsequently genotyped in a data set comprised of NSCLP families from Colombia, South America. Linkage disequilibrium analysis identified a significant association between CRISPLD2 and NSCLP in both our Caucasian and Hispanic NSCLP cohorts. SNP rs1546124 and haplotypes between rs1546124 and either rs4783099 or rs16974880 were significant in the Caucasian multiplex population (P=0.01, P=0.002 and P=0.001, respectively). An altered transmission of CRISPLD2 SNPs rs8061351 (P=0.02) and rs2326398 (P=0.06) was detected in the Hispanic population. No association was found between CRISPLD2 and our Colombian population or IRF8 and NSCLP. In situ hybridization showed that CRISPLD2 is expressed in the mandible, palate and nasopharynx regions during craniofacial development at E13.5-E17.5, respectively. Altogether, these data suggest that genetic variation in CRISPLD2 has a role in the etiology of NSCLP. PMID:17616516

  7. Deletions and candidate genes in Williams syndrome

    Energy Technology Data Exchange (ETDEWEB)

    Perez Jurado, L.A.; Peoples, R.; Francke, U. [Stanford Univ. CA (United States)] [and others

    1994-09-01

    Hemizygosity at the elastin locus (ELN) on chromosome 7q11.23 has recently been reported in several familial and sporadic cases of the developmental disorder, Williams syndrome (WS). Because the deletion is greater than the span of the ELN gene, a contiguous gene deletion syndrome has been suggested as the probable molecular basis for this condition. Thus far, neither the size of the deletion(s), nor other genes within it are known. We have analyzed samples from 27 sporadic WS patients by genotyping two multiallelic ELN intragenic polymorphisms, detectable by PCR amplification, and by Southern blotting for ELN gene dosage. Twenty four patients were hemizygous at the ELN locus while 3 showed no deletion or detectable rearrangement. Genotype studies on parental DNA were informative in 12 of the deletions. All 12 were due to de novo events, 8 in the maternal and 4 in the paternal chromosome. In an attempt to identify genes involved in WS we are also using a candidate gene approach. Delayed clearance of an exogenous calcium load with normal or slightly increased calcitonin levels in serum has been documented in WS patients suggesting a defective calcitonin action or calcium sensing function. The calcitonin receptor (CTR) gene is, therefore, a good candidate since CTR has a dual role as a hormonal receptor for calcitonin and an extracellular calcium sensor. We have mapped the CTR gene to chromosome 7q21.1 by PCR-SSCA of somatic cell hybrids and FISH analysis. Using two color FISH with probes for ELN and CTR, both loci are located on 7q at a distance of {approximately}10 Mb, CTR being telomeric. Our CTR probe does not detect any genomic abnormality by FISH or Southern blot in the patients` samples analyzed. We have identified a diallelic polymorphism in the CTR cDNA and are currently testing the hypothesis of an impaired CTR expression as responsible for some of the clinical features of WS by analysing the CTR transcripts by RT-PCR.

  8. Virus-like particles as nanovaccine candidates

    International Nuclear Information System (INIS)

    The existing vaccines are mainly limited to the microorganisms we are able to culture and produce and/or to those whose killing is mediated by humoral response (antibody mediated). It has been more difficult to develop vaccines capable of inducing a functional cellular response needed to prevent or cure chronic diseases. New strategies should be taken into account in the improvement of cell-based immune responses in order to prevent and control the infections and eventually clear the virus. Preclinical and clinical results with vaccine candidates developed as a vaccine platform based on virus-like particles (VLPs) evidenced their ability to stimulate mucosal as well as systemic immunity. Particles based on envelope, membrane or nucleocapsid microbial proteins induce a strong immune response after nasal or parenteral administration in mice, non-human primates and humans. In addition, the immune response obtained was modulated in a Th1 sense. The VLPs were also able to immunoenhance the humoral and cellular immune responses against several viral pathogens. Studies in animals and humans with nasal and systemic formulations evidenced that it is possible to induce functional immune response against HBV, HCV, HIV and dengue virus. (paper)

  9. ELECTIONS PENSION FUND CANDIDATE NR 2

    CERN Multimedia

    2001-01-01

    ORGANISATION EUROPEENNE POUR LA RECHERCHE NUCLEAIRE CERN EUROPEAN ORGANIZATION FOR NUCLEAR RESEARCH CAISSE DE PENSIONS / PENSION FUND Caisse de Pensions - ELECTIONS - Pension Fund This candidature has been duly registered and is hereby presented in accordance with paragraph 6.h of the Regulations for Elections to the Governing Board of the Pension Fund. Candidate : Name : FRANDSEN First Name : Poul Kjaer  I have been member of the staff since 1974, and member of staff council for more than 12 years, and my main motivation has been to work for improving the social conditions of the CERN staff. A very important pillar of this is a sound and healthy pension fund. A capitalised scheme has been and still is the best choice for assuring the benefits for the CERN staff, present and future, this social system being part of the whole necessary to attract the best staff to the future High Energy Physics in Europe. However, even the hypothetic close down of the Organisation should allow the benefits to exi...

  10. ELECTIONS PENSION FUND 2nd candidate

    CERN Multimedia

    2001-01-01

    ORGANISATION EUROPEENNE POUR LA RECHERCHE NUCLEAIRE CERN EUROPEAN ORGANIZATION FOR NUCLEAR RESEARCH CAISSE DE PENSIONS / PENSION FUND Caisse de Pensions - ELECTIONS - Pension Fund This candidature has been duly registered and is hereby presented in accordance with paragraph 6.h of the Regulations for Elections to the Governing Board of the Pension Fund. Candidate : Name : FRANDSEN First Name : Poul Kjaer  I have been member of the staff since 1974, and member of staff council for more than 12 years, and my main motivation has been to work for improving the social conditions of the CERN staff. A very important pillar of this is a sound and healthy pension fund. A capitalised scheme has been and still is the best choice for assuring the benefits for the CERN staff, present and future, this social system being part of the whole necessary to attract the best staff to the future High Energy Physics in Europe. However, even the hypothetic close down of the Organisation should allow the benefits to exi...

  11. Cerebrospinal fluid biomarker candidates for parkinsonian disorders

    Directory of Open Access Journals (Sweden)

    RaduConstantinescu

    2013-01-01

    Full Text Available The parkinsonian disorders are a large group of neurodegenerative diseases including idiopathic Parkinson's disease (PD and atypical parkinsonian disorders, such as multiple system atrophy, progressive supranuclear palsy, corticobasal degeneration, and dementia with Lewy bodies. The etiology of these disorders is not known although it is considered to be a combination of genetic and environmental factors. One of the greatest obstacles for developing efficacious disease-modifying treatment strategies is the lack of biomarkers. Reliable biomarkers are needed for early and accurate diagnosis, to measure disease progression and response to therapy. In this review several of the most promising cerebrospinal biomarker candidates are discussed. Alpha synuclein seems to be intimately involved in the pathogenesis of synucleinopathies and its levels can be measured in the cerebrospinal fluid and in plasma. In a similar way, tau protein accumulation seems to be involved in the pathogenesis of tauopathies. Urate, a potent antioxidant, seems to be associated to the risk of developing PD and with its progression. Neurofilament light chain levels are increased in atypical parkinsonian disorders compared with PD and healthy controls. The new "omics" techniques are potent tools offering new insights in the patho-etiology of these disorders. Some of the difficulties encountered in developing biomarkers are discussed together with future perspectives.

  12. ELECTIONS PENSION FUND CANDIDATE NO 1

    CERN Multimedia

    2000-01-01

    This candidature has been duly registered and is hereby presented in accordance with paragraph 6.h of the Regulations for Elections to the Governing Board of the Pension Fund. Candidate : Name: MAURINFirst Name:Guy I have been a member of the personnel since 1967 and as early as 1972 I was involved, in my capacity as President of the Staff Association, in the improvement of the Pension Fund benefits. As for most of us the Pension Fund is the only social provident scheme to which we belong, it is important to ensure that it is well managed and in balance. As a member of the Governing Board since 1974 and Vice-Chairman of this Board since 1977, I have continued to pursue these objectives.One of the main responsibilities of the Governing Board is our asset investment policy. The Investment Committee, of which I am Chairman, must have an overall view of the management of our 4 billion Swiss francs and seek the best yield with minimum risk. The investment structure must continuously be adapted...

  13. New optical nova candidate in M 31

    Science.gov (United States)

    Pietsch, W.; Henze, M.; Burwitz, V.; Kaur, A.; Hartmann, D. H.; Milne, P.; Williams, G.

    2010-12-01

    We report the discovery of a possible nova in M 31 on a 12x60s stacked R filter CCD image obtained with the robotic 60cm telescope with an E2V CCD (2kx2k, 13.5 micron sq. pixels) of the Livermore Optical Transient Imaging System (Super-LOTIS, located at Steward Observatory, Kitt Peak, Arizona, USA) on 2010 December 11.095 UT with magnitude of 16.6. The object is visible on all individual images. The position for the nova candidate is RA = 00h42m31.08s, Dec = +41d27'20.3"(J2000, accuracy of 0.3"), which is 149" west and 672" north of the core of M 31. We do not detect the object on a 4x60s stacked SLOTIS CCD image obtained on2010 December 5.213 UT (limiting R magnitude at the position of 19.0). There is no entry in VizieR/CDS for this object and no minor planet could be found on this position using the MPC/IAU Minor Planet Checker (see http://scully.harvard.edu/~cgi/CheckMP) . All magnitudes given are obtained from a photometric solution using R magnitudes of the Local Group Survey M 31 catalogue (Massey et al.

  14. Comet candidates among quasi-Hilda objects

    Science.gov (United States)

    Gil-Hutton, R.; García-Migani, E.

    2016-05-01

    Aims: We present the results of a search for quasi-Hilda comets. We wanted to find objects that have recently arrived from the Centaur zone that could became active near the perihelion of their orbits. Methods: Two hundred and seventy-seven objects from the ASTORB database were selected following a dynamical criteria to constrain the unstable quasi-Hilda region. These objects were integrated backward 50 000 yr in order to identify those that have recently arrived from the outer regions of the solar system. Results: The backward integration showed that 11 objects could be Centaurs or transneptunian objects that ended their dynamical evolution as quasi-Hilda comets. The dynamical evolution of these objects from a statistical point of view was studied by computing the time-averaged distribution of a number of clones as a function of the aphelion and perihelion distances. All the candidates show a dynamical behavior that is expected for comets injected in the inner solar system from the Centaur or transneptunian regions and reaching the quasi-Hilda region.

  15. ELECTIONS PENSION FUND CANDIDATE NO 2

    CERN Multimedia

    2000-01-01

    This candidature has been duly registered and is hereby presented in accordance with paragraph 6.h of the Regulations for Elections to the Governing Board of the Pension Fund.   Candidate: Name: RANJARDFirst Name: Florence Having been a member of the Governing Board of the Pension Fund since 1983 as Guy Maurin’s alternate, I am standing for a further 3-year term of office. Over the past few years work has concentrated essentially on following items: Monitoring of the work of the fund managers and their performances. The three-yearly study of the Fund’s actuarial situation. The pension guarantees ­ second phase. The Fund is approaching its maturity: the level of benefits exceeds contributions. In this context it has to strike a suitable balance between management of the risk from a dynamic investment policy, while a prudent policy avoiding any significant loss of its capital. These will be my concerns within the Governing Board of the Pension Fund if you...

  16. ELECTIONS PENSION FUND CANDIDATE NR 1

    CERN Multimedia

    2001-01-01

    ORGANISATION EUROPEENNE POUR LA RECHERCHE NUCLEAIRE CERN EUROPEAN ORGANIZATION FOR NUCLEAR RESEARCH CAISSE DE PENSIONS / PENSION FUND Caisse de Pensions - ELECTIONS - Pension Fund This candidature has been duly registered and is hereby presented in accordance with paragraph 6.h of the Regulations for Elections to the Governing Board of the Pension Fund. Candidate : Name : CHIAVERI First Name : Enrico I have been a CERN staff member since 1973 and have always been interested in our working conditions. As a member of the Executive Committee of the Staff Association I participated from 1980 to 1984 in the Working Group on Pensions mandated by the CERN Council. This commitment led to my becoming a member of the Governing Board of the Pension Fund in 1983, since when I have taken an active part in various commissions and working groups (Real Estate Asset Management Committee, Working Group on Actuarial Matters etc.); in so doing I have gained a thorough knowledge of different areas of the Pension Fund. Since ...

  17. Virus-like particles as nanovaccine candidates

    Science.gov (United States)

    Guillen, G.; Aguilar, J. C.; Dueñas, S.; Hermida, L.; Iglesias, E.; Penton, E.; Lobaina, Y.; Lopez, M.; Mussachio, A.; Falcon, V.; Alvarez, L.; Martinez, G.; Gil, L.; Valdes, I.; Izquierdo, A.; Lazo, L.; Marcos, E.; Guzman, G.; Muzio, V.; Herrera, L.

    2013-03-01

    The existing vaccines are mainly limited to the microorganisms we are able to culture and produce and/or to those whose killing is mediated by humoral response (antibody mediated). It has been more difficult to develop vaccines capable of inducing a functional cellular response needed to prevent or cure chronic diseases. New strategies should be taken into account in the improvement of cell-based immune responses in order to prevent and control the infections and eventually clear the virus. Preclinical and clinical results with vaccine candidates developed as a vaccine platform based on virus-like particles (VLPs) evidenced their ability to stimulate mucosal as well as systemic immunity. Particles based on envelope, membrane or nucleocapsid microbial proteins induce a strong immune response after nasal or parenteral administration in mice, non-human primates and humans. In addition, the immune response obtained was modulated in a Th1 sense. The VLPs were also able to immunoenhance the humoral and cellular immune responses against several viral pathogens. Studies in animals and humans with nasal and systemic formulations evidenced that it is possible to induce functional immune response against HBV, HCV, HIV and dengue virus. Invited talk at the 6th International Workshop on Advanced Materials Science and Nanotechnology, 30 October - 2 November 2012, Ha Long, Vietnam.

  18. MR imaging of cochlear implant candidates

    International Nuclear Information System (INIS)

    This paper reports on the value of diagnostic imaging in the workup of patients for possible placement of a multichannel intracochlear hearing device. Forty-five candidates for cochlear implantation were examined with both CT and MR imaging. In 32 adult patients coronal and axial T2-weighted spin-echo sequences were performed. In 10 patients, we used a T2*-weighted gradient-echo three-dimensional sequence with axial presaturation instead. Three children were examined with an ultrafast snapshot sequence for scout viewing, followed by a T2-weighted axial half-Fourier spin-echo sequence. In 36 patients we found the cochlea to be patent. Thirty-three of these patients successfully received an implant device. Three patients still await surgery. Six patients showed pathologic conditions in at least one ear at CT and MR alone. In 3 patients there was evidence of bony occulsion of the cochlear duct at CT; MR revealed a reduced signal intensity in the cochlea as well. Two patients with normal CT results showed abnormal conditions at MR imaging (reduced signal on T2-weighted images) and were not operated on

  19. Radio observations of candidate magnetic O stars

    CERN Document Server

    Schnerr, R S; van der Horst, A J; Oosterloo, T A; Miller-Jones, J C A; Henrichs, H F; Spoelstra, T A Th; Foley, A R; 10.1051/0004-6361:20066299

    2010-01-01

    Context: Some O stars are suspected to have to have (weak) magnetic fields because of the observed cyclical variability in their UV wind-lines. However, direct detections of these magnetic fields using optical spectropolarimetry have proven to be very difficult. Aims: Non-thermal radio emission in these objects would most likely be due to synchrotron radiation. As a magnetic field is required for the production of synchrotron radiation, this would be strong evidence for the presence of a magnetic field. Such non-thermal emission has already been observed from the strongly magnetic Ap/Bp stars. Methods: We have performed 6 & 21 cm observations using the WSRT and use these, in combination with archival VLA data at 3.6 cm and results from the literature, to study the radio emission of 5 selected candidate magnetic O stars. Results: Out of our five targets, we have detected three: $\\xi$ Per, which shows a non-thermal radio spectrum, and $\\alpha$ Cam and $\\lambda$ Cep, which show no evidence of a non-thermal s...

  20. ELECTIONS PENSION FUND CANDIDATE NR 5

    CERN Multimedia

    2001-01-01

    ORGANISATION EUROPEENNE POUR LA RECHERCHE NUCLEAIRE CERN EUROPEAN ORGANIZATION FOR NUCLEAR RESEARCH CAISSE DE PENSIONS / PENSION FUND Caisse de Pensions - ELECTIONS - Pension Fund This candidature has been duly registered and is hereby presented in accordance with paragraph 6.h of the Regulations for Elections to the Governing Board of the Pension Fund. Candidate :  Name : Sonnemann  First Name : Florian Since my arrival at CERN in 1997 I have worked in the accelerator and administrative sectors. I have recently been elected as member of the Staff Council and of the Executive Committee of the Staff Association in which I am actively following matters concerning the Pension Fund. My candidature for the Governing Board of the CERN Pension Fund is mainly motivated to add my part in ensuring a solid financial situation of the Pension Fund. The Pension Fund is our only social security system. I wish to play a role in ensuring that the pensions will remain a secure revenue for all staff membe...

  1. ELECTIONS PENSION FUND 5th candidate

    CERN Multimedia

    2001-01-01

    ORGANISATION EUROPEENNE POUR LA RECHERCHE NUCLEAIRE CERN EUROPEAN ORGANIZATION FOR NUCLEAR RESEARCH CAISSE DE PENSIONS / PENSION FUND Caisse de Pensions - ELECTIONS - Pension Fund This candidature has been duly registered and is hereby presented in accordance with paragraph 6.h of the Regulations for Elections to the Governing Board of the Pension Fund. Candidate :  Name : Sonnemann  First Name : Florian Since my arrival at CERN in 1997 I have worked in the accelerator and administrative sectors. I have recently been elected as member of the Staff Council and of the Executive Committee of the Staff Association in which I am actively following matters concerning the Pension Fund. My candidature for the Governing Board of the CERN Pension Fund is mainly motivated to add my part in ensuring a solid financial situation of the Pension Fund. The Pension Fund is our only social security system. I wish to play a role in ensuring that the pensions will remain a secure revenue for all staff membe...

  2. An evaluation of candidate oxidation resistant materials

    Science.gov (United States)

    Rutledge, Sharon; Banks, Bruce; Mirtich, Michael; Difilippo, Frank; Hotes, Deborah; Labed, Richard; Dever, Terese; Kussmaul, Michael

    1987-01-01

    Ground based testing of materials considered for Kapton solar array blanket protection, graphite epoxy structural member protection, and high temperature radiators was performed in an RF plasma asher. Ashing rates for Kapton were correlated with rates measured on STS-8 to determine the exposure time equivalent to one year in low Earth orbit (LEO) at a constant density space station orbital flux. Protective coatings on Kapton from Tekmat, Andus Corporation, and LeRC were evaluated in the plasma asher and mass loss rates per unit area were measured for each sample. All samples evaluated provided some protection to the underlying surface but ion beam sputter deposited samples of SiO2 and SiO2 with 8% polytetrafluoroethylene (PTFE) showed no evidence of degradation after 47 hours of exposure. Mica paint was evaluated as a protective coating for graphite epoxy structural members. Mica appears to be resistant to attack by atomic oxygen but only offers some limited protection as a paint because the paint vehicles evaluated to date were not resistant to atomic oxygen. Four materials were selected for evaluation as candidate radiator materials: stainless steel, copper, niobium-1% zirconium, and titanium-6% aluminum-4% vanadium. These materials were surface textured by various means to improve their emittance. Emittances as high as 0.93 at 2.5 microns for stainless steel and 0.89 at 2.5 microns for Nb-1 Zr were obtained from surface texturing. There were no significant changes in emittance after asher exposure.

  3. Fission reactor irradiation of candidate ceramics

    International Nuclear Information System (INIS)

    Samples of eleven candidate ceramics (MgO. xAl2O3 in five forms, and Al2O3, Si3N4 and SiC in two forms each) have been sent to the EBR-II fission reactor for neutron irradiation testing. EBR-II is being used because of its high neutron flux and the absence of thermal neutrons which cause undesirable nuclear reactions with 14N. The four families of ceramics selected for inclusion have all shown acceptable performance in irradiation tests carried out by the LASL Ceramics Program or by others. The present study will in some cases yield results at temperatures not yet investigated, and in others will allow the evaluation of forms of these ceramics never before irradiated. Samples will be irradiated at 675 and 825 K to approx. 2.4 x 1022 n/cm2 (E/sub n/ > 0.1 MeV), after which changes in electrical, mechanical, and thermal properties will be determined

  4. TEACHER CANDIDATES' PERCEPTIONS ABOUT TEACHING AND ASSESSING FLUENT READING

    OpenAIRE

    ULUSOY, MUSTAFA; DEDEOĞLU, Hakan; Ertem, İhsan Seyit

    2012-01-01

    The purpose of this study was to investigate teacher candidates' perceptions about how to teach and assess fluent reading. To this end, the data was collected from 180 candidates by using a survey consisting of 5 open-ended questions. The data was analyzed by using qualitative techniques and frequency analysis. Most of the teacher candidates believed that fluent reading should be done by considering spelling and punctuation, and the process should result in comprehension. The results also sho...

  5. Physical education candidate teachers' beliefs about vocational self-esteem

    OpenAIRE

    OZSAKER, Murat; CANPOLAT, A. Meliha

    2014-01-01

    The purpose of this study was to determine epistemological belief and vocational self-esteem physical education candidate teachers of Physical Education and Sports Department in 3 different universities, and also to examine effect of epistemological beliefs on vocational self-esteem. A total of 346 candidate teacher respondents (137 female and 209 male) participated in the study. Epistemological Beliefs and Vocational Self-Esteem Scale were used to determine candidate teachers’ epistemologica...

  6. The presidential candidates on Twitter during the 2009 Romanian elections

    OpenAIRE

    Antonio MOMOC

    2012-01-01

    What changes introduced Twitter in political communication? Which are the advantages and disadvantages of Twitter usage in electoral communication for candidates and for voters? As the specialized literature barely mentions the use of Twitter in the Romanian elections, we shall answer the question regarding the way in which the 2009 presidential candidates used their own Twitter accounts. This article starts from the assumption that presidential candidates use the online communication tools i...

  7. Newly identified YSO candidates towards the LDN 1188

    CERN Document Server

    Marton, Gábor; Kiss, Csaba; Smidla, József

    2013-01-01

    We present an analysis of Young Stellar Object (YSO) candidates towards the LDN 1188 molecular cloud. The YSO candidates were selected from the WISE all-sky catalogue, based on a statistical method. We found 601 candidates in the region, and classified them as Class I, Flat and Class II YSOs. Groups were identified and described with the Minimal Spanning Tree (MST) method. Previously identified molecular cores show evidence of ongoing star formation at different stages throughout the cloud complex.

  8. Extracting definition candidates from specialized corpora

    Directory of Open Access Journals (Sweden)

    Senja Pollak

    2014-07-01

    Full Text Available Human knowledge is available in different forms, including domain texts, terminological dictionaries, encyclopaediae, and recently also in computer- understandable representations of domain knowledge, such as taxonomies and ontologies. Since manual domain modeling is costly and time-consuming, researchers in human language technologies have started developing methods and tools for semi-automatic extraction of domain-specific knowledge from unstructured texts, involving tasks, such as terminology extraction, definition extraction, semantic relations extraction, or semi-automatic ontology building. This article presents a methodology for definition extraction from domain corpora, currently available for Slovene and English. Since most of the existing methods and tools are language specific and not developed for minor languages, the main contribution of the dissertation is the developed definition extraction methodology for Slovene. The proposed definition extraction methodology is based on three different approaches to extracting definition candidates. The first follows the traditional pattern-based approach, in which patterns are composed of lemmas and morphosyntactic descriptions; the second approach relies on pairs of domain terms extracted through automatic term extraction; the third approach exploits wordnet hypernym pairs. We propose an original combination of the three approaches. The developed methodology was applied to a real-case problem of modeling the language technologies domain, for which we constructed a comparable Slovene- English corpus consisting of about two million tokens. We extracted more than 3,400 definition candidates, of which over 700 (approximately 480 for Slovene and 230 for English were evaluated as definitions. The results are used as a basis for the Language Technologies Glossary.17 An additional contribution is the proposed domain-modeling pipeline—from corpus uploading and preprocessing to inspecting the

  9. Corrosion resistance of candidate transportation container materials

    International Nuclear Information System (INIS)

    The Department of Energy is currently remediating several sites that have been contaminated over the years with hazardous, mixed waste and radioactive materials. Regulatory guidelines require strict compliance demonstrating public safety during remediation and the transport of these hazardous, mixed waste and radioactive materials. The compatibility of the metallic transportation containers with the contents they are designed to transport is an ultimate concern that must be satisfied to ensure public safety. The transportation issue is inherently complicated due to the complex, varied, and unknown composition of the hazardous, mixed and radioactive waste that is being, considered for transport by the DOE facilities. Never before have the interactions between the waste being transported and the materials that comprise the transportation packages been more important. Therefore, evaluation of material performance when subjected to a simulated waste will ensure that all regulatory issues and requirements for transportation of hazardous, mixed, and radioactive wastes are satisfied. The tasks encompassed by this study include defining criteria for candidate material selection, defining a test matrix that will provide pertinent information on the material compatibility with the waste stimulant, and evaluation of material performance when subjected to a stimulant waste. Our goal is to provide package design engineers with a choice of materials which exhibit enhanced performance upon exposure to hazardous, mixed, and radioactive waste that is similar in composition to the waste stimulant used in this study. Due to the fact that there are many other possible waste compositions, additional work needs to be done to broaden our materials compatibility/waste stream data base

  10. Characterization for Fusion Candidate Vanadium Alloys

    Institute of Scientific and Technical Information of China (English)

    T. Muroga; T. Nagasaka; J. M. Chen; Z. Y. Xu; Q. Y. Huang; y. C. Wu

    2004-01-01

    This paper summarizes recent achievements in the characterization of candidate vanadium alloys obtained for fusion in the framework of the Japan-China Core University Program.National Institute for Fusion Science (NIFS) has a program of fabricating high-purity V-4Cr4Ti alloys. The resulting products (NIFS-HEAT-1,2), were characterized by various research groups in the world including Chinese partners. South Western Institute of Physics (SWIP) fabricated a new V-4Cr-4Ti alloy (SWIP-Heat), and carried out a comparative evaluation of hydrogen embrittlement of NIFS-HEATs and SWIP-Heat. The tensile test of hydrogen-doped alloys showed that the NIFS-HEAT maintained the ductility to relatively high hydrogen levels.The comparison of the data with those of previous studies suggested that the reduced oxygen level in the NIFS-HEATs should be responsible for the increased resistance to hydrogen embrittlement.Based on the chemical analysis data of NIFS-HEATs and SWIP-Heats, neutron-induced activation was analyzed in Institute of Plasma Physics (IPP-CAS) as a function of cooling time after the use in the fusion first wall. The results showed that the low level of Co dominates the activity up to 50 years followed by a domination of Nb or Nb and Al in the respective alloys. It was suggested that reduction of Co and Nb, both of which are thought to have been introduced via cross-contamination into the alloys from the molds used should be crucial for reducing further the activation.

  11. Phylum Level Change in the Cecal and Fecal Gut Communities of Rats Fed Diets Containing Different Fermentable Substrates Supports a Role for Nitrogen as a Factor Contributing to Community Structure

    Directory of Open Access Journals (Sweden)

    Martin Kalmokoff

    2015-05-01

    Full Text Available Fermentation differs between the proximal and distal gut but little is known regarding how the bacterial communities differ or how they are influenced by diet. In order to investigate this, we compared community diversity in the cecum and feces of rats by 16S rRNA gene content and DNA shot gun metagenomics after feeding purified diets containing different fermentable substrates. Gut community composition was dependent on the source of fermentable substrate included in the diet. Cecal communities were dominated by Firmicutes, and contained a higher abundance of Lachnospiraceae compared to feces. In feces, community structure was shifted by varying degrees depending on diet towards the Bacteroidetes, although this change was not always evident from 16S rRNA gene data. Multi-dimensional scaling analysis (PCoA comparing cecal and fecal metagenomes grouped by location within the gut rather than by diet, suggesting that factors in addition to substrate were important for community change in the distal gut. Differentially abundant genes in each environment supported this shift away from the Firmicutes in the cecum (e.g., motility towards the Bacteroidetes in feces (e.g., Bacteroidales transposons. We suggest that this phylum level change reflects a shift to ammonia as the primary source of nitrogen used to support continued microbial growth in the distal gut.

  12. Evolution and magnitudes of candidate Planet Nine

    Science.gov (United States)

    Linder, Esther F.; Mordasini, Christoph

    2016-05-01

    Context. The recently renewed interest in a possible additional major body in the outer solar system prompted us to study the thermodynamic evolution of such an object. We assumed that it is a smaller version of Uranus and Neptune. Aims: We modeled the temporal evolution of the radius, temperature, intrinsic luminosity, and the blackbody spectrum of distant ice giant planets. The aim is also to provide estimates of the magnitudes in different bands to assess whether the object might be detectable. Methods: Simulations of the cooling and contraction were conducted for ice giants with masses of 5, 10, 20, and 50 M⊕ that are located at 280, 700, and 1120 AU from the Sun. The core composition, the fraction of H/He, the efficiency of energy transport, and the initial luminosity were varied. The atmospheric opacity was set to 1, 50, and 100 times solar metallicity. Results: We find for a nominal 10 M⊕ planet at 700 AU at the current age of the solar system an effective temperature of 47 K, much higher than the equilibrium temperature of about 10 K, a radius of 3.7 R⊕, and an intrinsic luminosity of 0.006 L♃. It has estimated apparent magnitudes of Johnson V, R, I, L, N, Q of 21.7, 21.4, 21.0, 20.1, 19.9, and 10.7, and WISE W1-W4 magnitudes of 20.1, 20.1, 18.6, and 10.2. The Q and W4 band and other observations longward of about 13 μm pick up the intrinsic flux. Conclusions: If candidate Planet 9 has a significant H/He layer and an efficient energy transport in the interior, then its luminosity is dominated by the intrinsic contribution, making it a self-luminous planet. At a likely position on its orbit near aphelion, we estimate for a mass of 5, 10, 20, and 50 M⊕ a V magnitude from the reflected light of 24.3, 23.7, 23.3, and 22.6 and a Q magnitude from the intrinsic radiation of 14.6, 11.7, 9.2, and 5.8. The latter would probably have been detected by past surveys.

  13. University Offer Rates for Candidates from Different Ethnic Categories

    Science.gov (United States)

    Noden, Philip; Shiner, Michael; Modood, Tariq

    2014-01-01

    Previous research suggested that candidates from some black and minority ethnic groups were less likely to receive an offer of a place from an "old" university. These findings were disputed in a re-analysis carried out for HEFCE which found that only Pakistani candidates were significantly less likely to receive offers (from both…

  14. 28 CFR 105.14 - Risk assessment for candidates.

    Science.gov (United States)

    2010-07-01

    ... or national security as a result of the preliminary risk assessment, the candidate or the Provider... 28 Judicial Administration 2 2010-07-01 2010-07-01 false Risk assessment for candidates. 105.14... CHECKS Aviation Training for Aliens and Other Designated Individuals § 105.14 Risk assessment...

  15. Social Studies Teacher Candidates' Views on Historical Thinking Skills

    Science.gov (United States)

    Ozmen, Cengiz

    2015-01-01

    Current study aimed to present Social Studies teacher candidates' views on historical thinking skills. Study was conducted using qualitative design and working group was composed of a total of 121 teacher candidates (62 females and 59 males) attending Social Studies Teaching Department of Karadeniz Technical University and Adiyaman University…

  16. Opinions of Counselor Candidates Regarding Counseling Skills Training

    Science.gov (United States)

    Aladag, Mine; Yaka, Baris; Koç, Ismet

    2014-01-01

    The aim of this study is to contribute to the enhancement of the quality of counseling skills training and counselor education through the medium of understanding the opinions of counselor candidates regarding counseling skills training. The research group consisted of 67 counselor candidates who voluntarily participated in the study. The research…

  17. Facebook Connection Styles among Physical Education Teacher Candidates

    Science.gov (United States)

    Erdogdu, Murat

    2016-01-01

    The purpose of this study is to determine the Facebook connection styles of physical education (PE) teacher candidates. The participants were composed of 626 (age = 21.21 ± 2.024) physical education teacher candidates from the departments of Physical Education and Sports. They teach in five different universities. It was done in 2014-2015 academic…

  18. Assessing Student Teaching Experiences: Teacher Candidates' Perceptions of Preparedness

    Science.gov (United States)

    Lee, Joohi; Tice, Kathleen; Collins, Denise; Brown, Amber; Smith, Cleta; Fox, Jill

    2012-01-01

    The purpose of this study is to investigate the effectiveness of student teaching experiences by measuring teacher candidates' perceptions of their preparedness. The participants were 130 teacher candidates who had completed their student teaching as part of a program preparing them to teach children in pre-K through grade 4. Teacher candidates…

  19. Chemical Literacy Levels of Science and Mathematics Teacher Candidates

    Science.gov (United States)

    Celik, Suat

    2014-01-01

    The goal of this study was to investigate Turkish science and mathematics teacher candidates' levels of attainment in chemical literacy. These candidates had all studied the new Turkish chemistry curriculum in high school. The sample of the study consisted of 112 students, who were first-year students in the Department of Secondary Science…

  20. Teacher Candidates' Views of Digital Games as Learning Devices

    Science.gov (United States)

    Sardone, Nancy B.; Devlin-Scherer, Roberta

    2009-01-01

    The objective of this research study was to explore teacher candidate views toward digital learning games using an immersive strategy. Specifically, we were interested in finding out what game use in classroom settings taught candidates about the role of teacher as facilitator of instruction. The procedures first focused teacher candidate…

  1. Investigating Academic Achievements and Critical Thinking Dispositions of Teacher Candidates

    Science.gov (United States)

    Karagöl, Ibrahim; Bekmezci, Sinan

    2015-01-01

    The aim of this study is to examine the relationship between academic achievements and critical thinking dispositions of teacher candidates in Faculty of Education and to find out whether critical thinking dispositions and academic achievements scores of teacher candidates differ according to different variables. The population consists of the…

  2. Elections, Information, and State-Dependent Candidate Quality

    DEFF Research Database (Denmark)

    Jensen, Thomas

    The quality of political candidates often depends on the current state of the world, for example because their personal characteristics are more valuable in some situations than in others. We explore the implications of state-dependent candidate quality in a model of electoral competition where v...

  3. 11 CFR 9033.1 - Candidate and committee agreements.

    Science.gov (United States)

    2010-01-01

    ... pursuant to 11 CFR part 9039. The candidate and authorized committee(s) shall facilitate the audit by... authorized committee(s) will comply with the conditions set forth in 11 CFR 9033.1(b). The candidate may... committee(s) will comply with the documentation requirements set forth in 11 CFR 9033.11. (3) The...

  4. PERCEPTIONS OF TEACHER CANDIDATES ABOUT THE CONCEPT OF VISUAL LITERACY

    Directory of Open Access Journals (Sweden)

    Ali GÖÇER

    2013-06-01

    Full Text Available The aim of this study is to expose perceptions of teacher candidates about the concept of visual literacy through metaphors. The participants for this study included 131 teacher candidates from Erciyes Üniversitesi Eğitim Fakültesi. In order to collect data, teacher candidates were asked to complete the prompt “Visual literacy is like ... because ...”. The study was designed as a phenomenological study within the qualitative approach. The data was analyzed with using the content analysis technique. According to the data, teacher candidates produced 73 valid metaphors about the concept of visual literacy. Analyzing the metaphors which were investigated in terms of qualifications, different conceptual categories were identified. According to the result of this study, teacher candidates have positive perceptions towards the visual literacy.

  5. An annotated history of container candidate material selection

    International Nuclear Information System (INIS)

    This paper documents events in the Nevada Nuclear Waste Storage Investigations (NNWSI) Project that have influenced the selection of metals and alloys proposed for fabrication of waste package containers for permanent disposal of high-level nuclear waste in a repository at Yucca Mountain, Nevada. The time period from 1981 to 1988 is covered in this annotated history. The history traces the candidate materials that have been considered at different stages of site characterization planning activities. At present, six candidate materials are considered and described in the 1988 Consultation Draft of the NNWSI Site Characterization Plan (SCP). The six materials are grouped into two alloy families, copper-base materials and iron to nickel-base materials with an austenitic structure. The three austenitic candidates resulted from a 1983 survey of a longer list of candidate materials; the other three candidates resulted from a special request from DOE in 1984 to evaluate copper and copper-base alloys. 24 refs., 2 tabs

  6. PEACE: Pulsar Evaluation Algorithm for Candidate Extraction -- A software package for post-analysis processing of pulsar survey candidates

    CERN Document Server

    Lee, K J; Jenet, F A; Martinez, J; Dartez, L P; Mata, A; Lunsford, G; Cohen, S; Biwer, C M; Rohr, M; Flanigan, J; Walker, A; Banaszak, S; Allen, B; Barr, E D; Bhat, N D R; Bogdanov, S; Brazier, A; Camilo, F; Champion, D J; Chatterjee, S; Cordes, J; Crawford, F; Deneva, J; Desvignes, G; Ferdman, R D; Freire, P; Hessels, J W T; Karuppusamy, R; Kaspi, V M; Knispel, B; Kramer, M; Lazarus, P; Lynch, R; Lyne, A; McLaughlin, M; Ransom, S; Scholz, P; Siemens, X; Spitler, L; Stairs, I; Tan, M; van Leeuwen, J; Zhu, W W

    2013-01-01

    Modern radio pulsar surveys produce a large volume of prospective candidates, the majority of which are polluted by human-created radio frequency interference or other forms of noise. Typically, large numbers of candidates need to be visually inspected in order to determine if they are real pulsars. This process can be labor intensive. In this paper, we introduce an algorithm called PEACE (Pulsar Evaluation Algorithm for Candidate Extraction) which improves the efficiency of identifying pulsar signals. The algorithm ranks the candidates based on a score function. Unlike popular machine-learning based algorithms, no prior training data sets are required. This algorithm has been applied to data from several large-scale radio pulsar surveys. Using the human-based ranking results generated by students in the Arecibo Remote Command enter programme, the statistical performance of PEACE was evaluated. It was found that PEACE ranked 68% of the student-identified pulsars within the top 0.17% of sorted candidates, 95% ...

  7. A Catalog of Kepler Habitable Zone Exoplanet Candidates

    CERN Document Server

    Kane, Stephen R; Kasting, James F; Kopparapu, Ravi Kumar; Quintana, Elisa V; Barclay, Thomas; Batalha, Natalie M; Borucki, William J; Ciardi, David R; Haghighipour, Nader; Hinkel, Natalie R; Kaltenegger, Lisa; Selsis, Franck; Torres, Guillermo

    2016-01-01

    The NASA Kepler mission has discovered thousands of new planetary candidates, many of which have been confirmed through follow-up observations. A primary goal of the mission is to determine the occurrance rate of terrestrial-size planets within the Habitable Zone (HZ) of their host stars. Here we provide a list of HZ exoplanet candidates from the Kepler Data Release 24 Q1-Q17 data vetting process. This work was undertaken as part of the Kepler Habitable Zone Working Group. We use a variety of criteria regarding HZ boundaries and planetary sizes to produce complete lists of HZ candidates, including a catalog of 104 candidates within the optimistic HZ and 20 candidates with radii less than two Earth radii within the conservative HZ. We cross-match our HZ candidates with the Data Release 25 stellar properties and confirmed planet properties to provide robust stellar parameters and candidate dispositions. We also include false positive probabilities recently calculated by Morton et al. (2016) for each of the cand...

  8. Academic Self-Efficacy Perceptions of Teacher Candidates

    OpenAIRE

    Dr. Etem YEŞİLYURT

    2013-01-01

    This study aims determining academic self-efficacy perception of teacher candidates. It is survey model. Population of the study consists of teacher candidates in 2010-2011 academic years at Ahmet Keleşoğlu Education Faculty of Education Formation of Selçuk University. A simple random sample was selected as sampling method and the study was conducted on 312 teacher candidates. The data of this study was obtained by “academic selfefficacy scale” which was developed by Jerusalem and Schwazer (1...

  9. Detecting candidate cosmic bubble collisions with optimal filters

    CERN Document Server

    McEwen, J D; Johnson, M C; Peiris, H V

    2012-01-01

    We review an optimal-filter-based algorithm for detecting candidate sources of unknown and differing size embedded in a stochastic background, and its application to detecting candidate cosmic bubble collision signatures in Wilkinson Microwave Anisotropy Probe (WMAP) 7-year observations. The algorithm provides an enhancement in sensitivity over previous methods by a factor of approximately two. Moreover, it is optimal in the sense that no other filter-based approach can provide a superior enhancement of these signatures. Applying this algorithm to WMAP 7-year observations, eight new candidate bubble collision signatures are detected for follow-up analysis.

  10. Planet Hunters VI: The First Kepler Seven Planet Candidate System and 13 Other Planet Candidates from the Kepler Archival Data

    CERN Document Server

    Schmitt, Joseph R; Fischer, Debra A; Jek, Kian J; Moriarty, John C; Boyajian, Tabetha S; Schwamb, Megan E; Lintott, Chris; Smith, Arfon M; Parrish, Michael; Schawinski, Kevin; Lynn, Stuart; Simpson, Robert; Omohundro, Mark; Winarski, Troy; Goodman, Samuel J; Jebson, Tony; Lacourse, Daryll

    2013-01-01

    We report the discovery of 14 new transiting planet candidates in the Kepler field from the Planet Hunters citizen science program. None of these candidates overlap with Kepler Objects of Interest (KOIs), and five of the candidates were missed by the Kepler Transit Planet Search (TPS) algorithm. The new candidates have periods ranging from 124-904 days, eight residing in their host star's habitable zone (HZ) and two (now) in multiple planet systems. We report the discovery of one more addition to the six planet candidate system around KOI-351, marking the first seven planet candidate system from Kepler. Additionally, KOI-351 bears some resemblance to our own solar system, with the inner five planets ranging from Earth to mini-Neptune radii and the outer planets being gas giants; however, this system is very compact, with all seven planet candidates orbiting $\\lesssim 1$ AU from their host star. We perform a numerical integration of the orbits and show that the system remains stable for over 100 million years....

  11. Verrucomicrobia Are Candidates for Polysaccharide-Degrading Bacterioplankton in an Arctic Fjord of Svalbard

    OpenAIRE

    Cardman, Z.; C. Arnosti; Durbin, A.; Ziervogel, K.; Cox, C; A. D. Steen; Teske, A

    2014-01-01

    In Arctic marine bacterial communities, members of the phylum Verrucomicrobia are consistently detected, although not typically abundant, in 16S rRNA gene clone libraries and pyrotag surveys of the marine water column and in sediments. In an Arctic fjord (Smeerenburgfjord) of Svalbard, members of the Verrucomicrobia, together with Flavobacteria and smaller proportions of Alpha- and Gammaproteobacteria, constituted the most frequently detected bacterioplankton community members in 16S rRNA gen...

  12. Construction of Basic Evaluation Criteria for Candidate HLW Repository Sites

    International Nuclear Information System (INIS)

    The final objectives of the research are to study basically site selection criteria and methods for high level radioactive wastes disposal. In order to accomplish the final objectives, this study proposes basic concept of site evaluation and selection for HLW disposal and develops a geologic database system for management of geologic data which will be used for site selection. This study performed the following contents such as i) development of a technical guide for geologic evaluation system for candidate sites selection; ii) construction of geological evaluation factors and selection methods for candidate sites; iii) development of geologic information system for evaluation and selection of candidate sites. The results are expected to be applied for basic research results for setting up further research foundation for site selection, development of systematic site evaluation process considered with geologic conditions of candidate sites, and utilization of the research result for public acceptance

  13. Value-Added Measures of Teacher Candidates' Dispositions

    Science.gov (United States)

    Cosgrove, Maryellen; Carpenter, Barbara

    2012-01-01

    This article describes how a teacher preparation program can positively impact professional dispositions. Pre and post essays from a sample of sixty candidates were qualitatively analyzed to determine the value-added growth of their professional dispositions.

  14. Architecture and Dynamics of Kepler's Candidate Multiple Transiting Planet Systems

    CERN Document Server

    Lissauer, Jack J; Fabrycky, Daniel C; Batalha, Natalie M; Borucki, William J; Bryson, Stephen T; Caldwell, Douglas A; Dunham, Edward W; Ford, Eric B; Fortney, Jonathan J; Gautier, Thomas N; Holman, Matthew J; Jenkins, Jon M; Koch, David G; Latham, David W; Marcy, Geoffrey W; Morehead, Robert; Rowe, Jason; Quintana, Elisa V; Sasselov, Dimitar; Shporer, Avi; Steffen, Jason H

    2011-01-01

    Borucki et al. 2011 (ApJ, submitted) report on characteristics of over 1200 candidate transiting planets orbiting nearly 1000 Kepler spacecraft target stars detected in the first four months of spacecraft data. Included among these targets are 115 targets with two transiting planet candidates, 45 targets with three, 8 with four, and one each with five and six sets of transit signatures. We characterize herein the dynamical properties of these candidate multi-planet systems. We find that virtually all systems are stable, as tested by numerical integration assuming a mass-radius relationship. The distribution of observed period ratios is also clustered just outside resonances, particularly the 2:1 resonance. Neither of these characteristics would emerge if the systems were significantly contaminated with false positives, and these combined with other considerations strongly suggest that the majority of these multi-candidate systems are true planetary systems. Using the observed multiplicity frequencies (e.g., t...

  15. *612211 TUMOR SUPPRESSOR CANDIDATE 5; TUSC5 [OMIM

    Lifescience Database Archive (English)

    Full Text Available FIELD NO 612211 FIELD TI 612211 TUMOR SUPPRESSOR CANDIDATE 5; TUSC5 ;;LOST1 FIELD TX CLONING Usi ... significantly inhibited by cold exposure in Zucker lean ... rats. In primary cultured rat brown preadipocytes, ...

  16. Review of Mycobacteriumavium subsp. paratuberculosis antigen candidates with diagnostic potential

    DEFF Research Database (Denmark)

    Mikkelsen, Heidi; Aagaard, Claus; Nielsen, Søren Saxmose; Jungersen, Gregers

    development of antibodies and shedding of detectable amounts of MAP. At present, available diagnostic assays are limited by the lack of MAP specific antigens included in these assays resulting in poor specificity. The objective of this review is to provide a systematic overview of diagnostic MAP antigen...... candidates described to date with special emphasis on antigen candidates tested for CMI responses. Relevant information on 115 different MAP antigens was systematically extracted from literature and summarized in 6 tables of CMI antigens, secreted antigens, cell wall and membrane antigens, lipoprotein...... antigens, heat shock antigens and hypothetical antigens. Strategies for evaluation of novel antigen candidates are discussed critically. Relatively few of the described antigens were evaluated for their use in CMI based diagnostic assays and so far, no obvious candidate has been identified for this...

  17. Unifying Candidate Gene and GWAS Approaches in Asthma

    OpenAIRE

    Michel, Sven; Liang, Liming; Depner, Martin; Klopp, Norman; Ruether, Andreas; Kumar, Ashish; Schedel, Michaela; Vogelberg, Christian; Mutius, Erika von; Berg, Andrea von; Bufe, Albrecht; Rietschel, Ernst; Heinzmann, Andrea; Laub, Otto; Simma, Burkhard

    2010-01-01

    The first genome wide association study (GWAS) for childhood asthma identified a novel major susceptibility locus on chromosome 17q21 harboring the ORMDL3 gene, but the role of previous asthma candidate genes was not specifically analyzed in this GWAS. We systematically identified 89 SNPs in 14 candidate genes previously associated with asthma in >3 independent study populations. We re-genotyped 39 SNPs in these genes not covered by GWAS performed in 703 asthmatics and 658 reference children....

  18. Pedigree verification with multiple candidate parents using Pedverif software

    Directory of Open Access Journals (Sweden)

    S. Caracappa

    2010-04-01

    Full Text Available Species like sheep and beef cattle are commonly raised in large herds and often on pasture with multiple sires joining the females for unrecorded natural insemination. This leads to offspring with multiple candidate parents and therefore uncertain parentage. Twins or triplets can be from multiple sires as well. Pedigrees from such populations are often problematic and need proper verification. The Pedverif computer program is able to verify normal pedigrees as well as pedigrees with multiple candidate parents.

  19. DVB-T Candidate Power Detector for Cognitive Radio

    OpenAIRE

    Lagunas, M.A.; Perez-Neira, Ana I.; Rojas, Miguel Angel

    2015-01-01

    Dynamic detection of primary users is one of the main functions of spectrum sensing for Cognitive Radio (CR) communications aiming to increase the use of radio spectrum. In this work the performance of the so-called Candidate power detector is reported. The main objective of this detector is the proper spectrum labelling of primary users in cognitive radio scenarios. The Candidate detector is tuned in order to detect Digital Video Broadcasting Terrestrial (DVB-T) signals,...

  20. Radiative Neutrino Mass via Both Minimal Dark Matter Candidates

    CERN Document Server

    Ahriche, Amine; Nasri, Salah; Picek, Ivica

    2016-01-01

    We identify a minimal model achieving one-loop radiative neutrino masses due to couplings with dark matter. Interestingly the model contains both the quintuplet fermion and the septuplet scalar identified as minimal dark matter candidates by Cirelli, Fornengo and Strumia - it gives radiative neutrino mass due to both minimal dark matter candidates. The model is related to those proposed in a recent work (dubbed minimal R$\

  1. Transiting exoplanet candidates from K2 Campaigns 5 and 6

    Science.gov (United States)

    Pope, Benjamin J. S.; Parviainen, Hannu; Aigrain, Suzanne

    2016-06-01

    We introduce a new transit search and vetting pipeline for observations from the K2 mission, and present the candidate transiting planets identified by this pipeline out of the targets in Campaigns 5 and 6. Our pipeline uses the Gaussian Process-based K2SC code to correct for the K2 pointing systematics and simultaneously model stellar variability. The systematics-corrected, variability-detrended light curves are searched for transits with the Box Least Squares method, and a period-dependent detection threshold is used to generate a preliminary candidate list. Two or three individuals vet each candidate manually to produce the final candidate list, using a set of automatically-generated transit fits and assorted diagnostic tests to inform the vetting. We detect 147 single-planet system candidates and 5 multi-planet systems, independently recovering the previously-published hot Jupiters EPIC 212110888b, WASP-55b (EPIC 212300977b) and Qatar-2b (EPIC 212756297b). We also report the outcome of reconnaissance spectroscopy carried out for all candidates with Kepler magnitude Kp ≤ 13, identifying 12 targets as likely false positives. We compare our results to those of other K2 transit search pipelines, noting that ours performs particularly well for variable and/or active stars, but that the results are very similar overall. All the light curves and code used in the transit search and vetting process are publicly available, as are the follow-up spectra.

  2. Arthropods: Developmental diversity within a (super) phylum

    OpenAIRE

    Akam, Michael

    2000-01-01

    The expression patterns of developmental genes provide new markers that address the homology of body parts and provide clues as to how body plans have evolved. Such markers support the idea that insect wings evolved from limbs but refute the idea that insect and crustacean jaws are fundamentally different in structure. They also confirm that arthropod tagmosis reflects underlying patterns of Hox gene regulation but they do not yet resolve to what extent Hox expression ...

  3. Robo-AO Kepler Planetary Candidate Survey III: Adaptive Optics Imaging of 1629 Kepler Exoplanet Candidate Host Stars

    CERN Document Server

    Ziegler, Carl; Morton, Tim; Baranec, Christoph; Riddle, Reed; Atkinson, Dani; Baker, Anna; Roberts, Sarah; Ciardi, David R

    2016-01-01

    The Robo-AO \\textit{Kepler} Planetary Candidate Survey is observing every \\textit{Kepler} planet candidate host star with laser adaptive optics imaging to search for blended nearby stars, which may be physically associated companions and/or responsible for transit false positives. We present in this paper the results of our search for stars nearby 1629 \\textit{Kepler} planet candidate hosts. With survey sensitivity to objects as close as $\\sim$0.15" and magnitude differences $\\Delta$m$\\le$6, we find 223 stars in the vicinity of 206 target KOIs; 209 of these nearby stars have not previously been imaged in high resolution. We measure an overall nearby-star probability for \\textit{Kepler} planet candidates of 12.6\\%$\\pm$0.9\\% out to a separation of 4.0". Particularly interesting KOI systems are discussed, including 23 stars with detected companions which host rocky, habitable zone candidates, and five new candidate planet-hosting quadruple star systems. We explore the broad correlations between planetary systems...

  4. SOPHIE velocimetry of Kepler transit candidates VI. A false positive rate of 35% for Kepler close-in giant candidates

    CERN Document Server

    Santerne, A; Moutou, C; Bouchy, F; Hébrard, G; Almenara, J -M; Bonomo, A S; Deleuil, M; Santos, N C

    2012-01-01

    The false positive probability (FPP) of Kepler transiting candidates is a key value for statistical studies of candidate properties. An investigation of the stellar population in the Kepler field by Morton & Johnson (2011) has provided an estimation for the FPP of less than 5% for most of the candidates. We report here the results of our radial velocity observations on a sample of 46 Kepler candidates with transit depth greater than 0.4%, orbital period less than 25 days and host star brighter than Kepler magnitude 14.7. We used the SOPHIE spectrograph mounted on the 1.93-m telescope at the Observatoire de Haute-Provence to establish the nature of the transiting candidates. In this sample, we found 5 undiluted eclipsing binaries, 2 brown dwarfs, 6 diluted eclipsing binaries and 9 new transiting planets that complete the 11 already published. The remaining 13 candidates were not followed up or remain unsolved due to photon noise limitation or lack of observations. From these results we compute the FPP for ...

  5. Representações sociais dos moradores da Baía de Camamu sobre o Filo Porifera Social representations of Camamu Bay, Brazil, inhabitants of the Phylum Porífera

    Directory of Open Access Journals (Sweden)

    Loyana Docio

    2009-01-01

    Full Text Available O artigo apresenta uma pesquisa que teve o objetivo de traçar um perfil das representações sociais dos moradores de três localidades da Baía de Camamu, Estado da Bahia, sobre o Filo Porifera. O foco nos poríferos foi motivado pela grande biomassa de esponjas no fenômeno de arribação da baía e ausência de pesquisas sobre esses animais na área do ensino. A metodologia esteve pautada nas representações sociais, pois conhecimentos (reconstruídos na vivência de um local característico, como o apresentado por esse ambiente, permitem desenhar perspectivas que subsidiam o ensino de Ciências, por exemplo, no tratamento dos obstáculos epistemológicos à aprendizagem de conceitos científicos. Foram realizadas sessenta entrevistas semiestruturadas, vinte em cada lugarejo (Ilha do Contrato, Barra Grande e Ilha dos Tubarões. Os dados foram organizados em categorias que resultaram num perfil de conhecimentos sobre os seguintes aspectos dos poríferos: estado vital, origem, taxonomia, ecologia, anatomia, fisiologia, utilidade antrópica e espongose.This study established a profile of social representations by inhabitants in three locations in Camamu Bay (state of Bahia of the Phylum Porifera. Among other reasons, the focus on Porifera is due to its significant biomass ascertained in the bay region's migration phenomenon and the lack of research on these animals in education. The methodology used was based on social representations because when knowledge is (rebuilt from experience of a location with a characteristic profile is compared to scientific knowledge, it is possible to draw perspectives for Science education, such as the epistemological obstacles to the learning of scientific concepts. Sixty semi-structured interviews were carried out, twenty in each place (Ilha do Contrato, Barra Grande, and Ilha dos Tubarões. The gathered data was organized into categories that outlined a profile of knowledge that includes characteristics such

  6. Unifying candidate gene and GWAS Approaches in Asthma.

    Directory of Open Access Journals (Sweden)

    Sven Michel

    Full Text Available The first genome wide association study (GWAS for childhood asthma identified a novel major susceptibility locus on chromosome 17q21 harboring the ORMDL3 gene, but the role of previous asthma candidate genes was not specifically analyzed in this GWAS. We systematically identified 89 SNPs in 14 candidate genes previously associated with asthma in >3 independent study populations. We re-genotyped 39 SNPs in these genes not covered by GWAS performed in 703 asthmatics and 658 reference children. Genotyping data were compared to imputation data derived from Illumina HumanHap300 chip genotyping. Results were combined to analyze 566 SNPs covering all 14 candidate gene loci. Genotyped polymorphisms in ADAM33, GSTP1 and VDR showed effects with p-values <0.0035 (corrected for multiple testing. Combining genotyping and imputation, polymorphisms in DPP10, EDN1, IL12B, IL13, IL4, IL4R and TNF showed associations at a significance level between p = 0.05 and p = 0.0035. These data indicate that (a GWAS coverage is insufficient for many asthma candidate genes, (b imputation based on these data is reliable but incomplete, and (c SNPs in three previously identified asthma candidate genes replicate in our GWAS population with significance after correction for multiple testing in 14 genes.

  7. Transiting exoplanet candidates from K2 Campaigns 5 and 6

    CERN Document Server

    Pope, Benjamin J S; Aigrain, Suzanne

    2016-01-01

    We introduce a new transit search and vetting pipeline for observations from the K2 mission, and present the candidate transiting planets identified by this pipeline out of the targets in Campaigns 5 and 6. Our pipeline uses the Gaussian Process-based K2SC code to correct for the K2 pointing systematics and simultaneously model stellar variability. The systematics-corrected, variability-detrended light curves are searched for transits with the Box Least Squares method, and a period-dependent detection threshold is used to generate a preliminary candidate list. Two or three individuals vet each candidate manually to produce the final candidate list, using a set of automatically-generated transit fits and assorted diagnostic tests to inform the vetting. We detect 147 single-planet system candidates and 5 multi-planet systems, independently recovering the previously-published hot~Jupiters EPIC 212110888b, WASP-55b (EPIC 212300977b) and Qatar-2b (EPIC 212756297b). We also report the outcome of reconnaissance spec...

  8. Integrative analysis to select cancer candidate biomarkers to targeted validation

    Science.gov (United States)

    Heberle, Henry; Domingues, Romênia R.; Granato, Daniela C.; Yokoo, Sami; Canevarolo, Rafael R.; Winck, Flavia V.; Ribeiro, Ana Carolina P.; Brandão, Thaís Bianca; Filgueiras, Paulo R.; Cruz, Karen S. P.; Barbuto, José Alexandre; Poppi, Ronei J.; Minghim, Rosane; Telles, Guilherme P.; Fonseca, Felipe Paiva; Fox, Jay W.; Santos-Silva, Alan R.; Coletta, Ricardo D.; Sherman, Nicholas E.; Paes Leme, Adriana F.

    2015-01-01

    Targeted proteomics has flourished as the method of choice for prospecting for and validating potential candidate biomarkers in many diseases. However, challenges still remain due to the lack of standardized routines that can prioritize a limited number of proteins to be further validated in human samples. To help researchers identify candidate biomarkers that best characterize their samples under study, a well-designed integrative analysis pipeline, comprising MS-based discovery, feature selection methods, clustering techniques, bioinformatic analyses and targeted approaches was performed using discovery-based proteomic data from the secretomes of three classes of human cell lines (carcinoma, melanoma and non-cancerous). Three feature selection algorithms, namely, Beta-binomial, Nearest Shrunken Centroids (NSC), and Support Vector Machine-Recursive Features Elimination (SVM-RFE), indicated a panel of 137 candidate biomarkers for carcinoma and 271 for melanoma, which were differentially abundant between the tumor classes. We further tested the strength of the pipeline in selecting candidate biomarkers by immunoblotting, human tissue microarrays, label-free targeted MS and functional experiments. In conclusion, the proposed integrative analysis was able to pre-qualify and prioritize candidate biomarkers from discovery-based proteomics to targeted MS. PMID:26540631

  9. Counts of low-Redshift SDSS quasar candidates

    International Nuclear Information System (INIS)

    We analyze the counts of low-redshift quasar candidates selected using nine-epoch SDSS imaging data. The co-added catalogs are more than 1 mag deeper than single-epoch SDSS data, and allow the selection of low-redshift quasar candidates using UV-excess and also variability techniques. The counts of selected candidates are robustly determined down to g = 21.5. This is about 2 magnitudes deeper than the position of a change in the slope of the counts reported by Boyle (and others) (1990, 2000) for a sample selected by UV-excess, and questioned by Hawkins and Veron (1995), who utilized a variability-selected sample. Using SDSS data, we confirm a change in the slope of the counts for both UV-excess and variability selected samples, providing strong support for the Boyle (and others) results

  10. Preoperative cardiovascular investigations in liver transplant candidate: An update

    Science.gov (United States)

    Sehgal, Lalit; Srivastava, Piyush; Pandey, Chandra Kant; Jha, Amit

    2016-01-01

    Cardiovascular complications are a major cause of morbidity and mortality in patients with end-stage liver disease (ESLD) undergoing liver transplantation. Identifying candidates at the highest risk of postoperative cardiovascular complications is the cornerstone for optimizing the outcome. Ischaemic heart disease contributes to major portion of cardiovascular complications and therefore warrants evaluation in the preoperative period. Patients of ESLD usually demonstrate increased cardiac output, compromised ventricular response to stress, low systemic vascular resistance and occasionally bradycardia. Despite various recommendations for preoperative evaluation of cardiovascular disease in liver transplant candidates, a considerable controversy on screening methodology persists. This review critically focuses on the rapidly expanding body of evidence for diagnosis and risk stratification of cardiovascular disorder in liver transplant candidates. PMID:26962249

  11. Gravitational lenses and lens candidates identified from the COSMOS field

    CERN Document Server

    Jackson, Neal

    2008-01-01

    A complete manual search has been carried out of the list of 285423 objects, nearly all of them galaxies, identified in the COSMOS field that are brighter than I=25. Two certain and one highly probable new gravitational lenses are found, in addition to the lenses and candidate lens systems previously found by Faure et al. (2008). A further list of 112 candidate lens systems is presented. Few of these are likely to be true gravitational lens systems, most being star-forming rings or pairs of companion galaxies. It is possible to examine of order 10^6 objects by eye in a reasonable time, although reliable detection of lenses by such methods is likely to be possible only with high-resolution data. The loss of completeness involved in a rapid search is estimated as up to a factor of 2, depending on the morphology of the lens candidate.

  12. Evaluation and selection of candidate high-level waste forms

    International Nuclear Information System (INIS)

    Seven candidate waste forms being developed under the direction of the Department of Energy's National High-Level Waste (HLW) Technology Program, were evaluated as potential media for the immobilization and geologic disposal of high-level nuclear wastes. The evaluation combined preliminary waste form evaluations conducted at DOE defense waste-sites and independent laboratories, peer review assessments, a product performance evaluation, and a processability analysis. Based on the combined results of these four inputs, two of the seven forms, borosilicate glass and a titanate based ceramic, SYNROC, were selected as the reference and alternative forms for continued development and evaluation in the National HLW Program. Both the glass and ceramic forms are viable candidates for use at each of the DOE defense waste-sites; they are also potential candidates for immobilization of commercial reprocessing wastes. This report describes the waste form screening process, and discusses each of the four major inputs considered in the selection of the two forms

  13. Facial discrimination of political candidates and voting behavior

    Directory of Open Access Journals (Sweden)

    Alina Duduciuc

    2012-04-01

    Full Text Available After a review of psychosociological research concerning the sources of prejudices and discriminations, this article brings into discussion the cognitive approach of perceiving the other as being „otherwise” than the members of the in-group. We will discuss the situations, structural and personal factors as being some determining ones for discriminant behavior. Within the lines of cognitive paradigm, we ask how the individual does discriminate, by perceptive processes, between candidates which are considered attractive, which go together with the expectations of the electorate concerning the physical aspects and candidates who are „less desirable”.

  14. Former Head of CNOOC Named as Candidate for Governor

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    @@ The Central Committee of the Chinese Communist Party has appointed Wei Liucheng, Former President of CNOOC and Former Chairman and CEO of CNOOC Limited, as Deputy Secretary of Hainan Provincial Committee and named him as the candidate for Governor of Hainan Province. At a conference of Hainan Provincial Committee of the Party held on October 8, at which the organization department of the Communist Party of China announced nomination of Wei as the deputy Party secretary of Hainan, which is the second highest position in the provincial government. Wei was also chosen as a candidate for the governor of the island province.

  15. Ethical issues in the psychosocial assessment of bariatric surgery candidates.

    Science.gov (United States)

    Rouleau, Codie R; Rash, Joshua A; Mothersill, Kerry J

    2016-07-01

    Psychosocial evaluation is recommended prior to bariatric surgery. Practice guidelines have been published on assessment methods for bariatric surgery candidates, but they have not emphasized ethical issues with this population. This review outlines ethical and professional considerations for behavioral healthcare providers who conduct pre-surgical assessments of bariatric surgery candidates by merging ethical principles for mental health professionals with current practices in pre-surgical assessments. Issues discussed include the following: (a) establishing and maintaining competence, (b) obtaining informed consent, (c) respecting confidentiality, (d) avoiding bias and discrimination, (e) avoiding and addressing dual roles, (f) selecting and using psychological tests, and (g) acknowledging limitations of psychosocial assessments. PMID:25411197

  16. Kepler Mission Discovers Trove of Extrasolar Planet Candidates

    Science.gov (United States)

    Showstack, Randy

    2011-02-01

    NASA's Kepler discovery mission is collecting more than just pennies from heaven. Results from the first 4 months of science operations of the Kepler space telescope, announced on 2 February, include the discovery of 1235 candidate planets orbiting 997 stars in a small portion of the Milky Way galaxy examined by the telescope. Follow-up observations likely could confirm about 80% of the candidates as actual planets rather than false positives, according to researchers. This new trove of possible exoplanets could greatly expand the number of known planets outside of our solar system.

  17. Practical Large Scale Syntheses of New Drug Candidates

    Institute of Scientific and Technical Information of China (English)

    Hui-Yin Li

    2001-01-01

    @@ This presentation will be focus on Practical large scale syntheses of lead compounds and drug candidates from three major therapeutic areas from DuPont Pharmaceuticals Research Laboratory: 1). DMP777-a selective, non-toxic, orally active human elastase inhibitor; 2). DMP754-a potent glycoprotein IIb/IIIa antagonist; 3). R-Wafarin-the pure enantiomeric form of wafarin. The key technology used for preparation these drug candidates is asymmetric hydrogenation under very mild reaction conditions, which produced very high quality final products at large scale (>99% de, >99 A% and >99 wt%). Some practical and GMP aspects of process development will be also discussed.

  18. Practical Large Scale Syntheses of New Drug Candidates

    Institute of Scientific and Technical Information of China (English)

    Hui-Yin; Li

    2001-01-01

    This presentation will be focus on Practical large scale syntheses of lead compounds and drug candidates from three major therapeutic areas from DuPont Pharmaceuticals Research Laboratory: 1). DMP777-a selective, non-toxic, orally active human elastase inhibitor; 2). DMP754-a potent glycoprotein IIb/IIIa antagonist; 3). R-Wafarin-the pure enantiomeric form of wafarin. The key technology used for preparation these drug candidates is asymmetric hydrogenation under very mild reaction conditions, which produced very high quality final products at large scale (>99% de, >99 A% and >99 wt%). Some practical and GMP aspects of process development will be also discussed.……

  19. Dark matter candidates and methods for detecting them

    Science.gov (United States)

    Raffelt, G. G.

    1992-01-01

    A number of experiments employing Ge and Si ionization detectors have excluded large regions in the plane of masses and scattering cross-sections for weakly-interacting dark matter (DM) candidates. It is judged that, before a realistic detection experiment for supersymmetric DM candidates can be conducted, significant development efforts will have to be completed for suitable cryogenic or ionization detectors. Pilot experiments have demonstrated the feasibility of axion searches with microwave cavities, but these are at least two orders of magnitude too low in sensitivity.

  20. Single Transit Candidates from K2: Detection and Period Estimation

    CERN Document Server

    Osborn, H P; Brown, D J A; McCormac, J; Doyle, A P; Louden, T M; Kirk, J; Spake, J J; Lam, K W F; Walker, S R; Faedi, F; Pollacco, D L

    2015-01-01

    Photometric surveys such as Kepler have the precision to identify exoplanet and eclipsing binary candidates from only a single transit. K2, with its 75d campaign duration, is ideally suited to detect significant numbers of single-eclipsing objects. Here we develop a Bayesian transit-fitting tool ("Namaste: An Mcmc Analysis of Single Transit Exoplanets") to extract orbital information from single transit events. We achieve favourable results testing this technique on known Kepler planets, and apply the technique to 7 candidates identified from a targeted search of K2 campaigns 1, 2 and 3. We find EPIC203311200 to host an excellent exoplanet candidate with a period, assuming zero eccentricity, of $540 ^{+410}_{-230}$ days and a radius of $0.51 \\pm 0.05 R_{Jup}$. We also find six further transit candidates for which more follow-up is required to determine a planetary origin. Such a technique could be used in the future with TESS, PLATO and ground-based photometric surveys such as NGTS, potentially allowing the d...

  1. Selection of Nearby Microlensing Candidates for Observation by SIM

    CERN Document Server

    Gould, A

    1999-01-01

    I investigate the prospects for using the Space Interferometry Mission (SIM) to measure the masses of nearby stars from their astrometric deflection of more distant sources, as originally suggested by Paczynski and by Miralda-Escude. I derive an analytic expression for the total observing time T_tot required to measure the masses of a fixed number of stars to a given precision. I find that T_tot ~ r_max^{-2}, where r_max is the maximum radius to which candidates are searched, or T_tot ~ \\mu_min^2, where \\mu_min is the minimum proper motion to which candidates are searched. I show that T_tot can be reduced by a factor 4 if source availability is extended from V_s=17 to V_s=19. Increasing r_max and V_s and decreasing \\mu_min all require a significantly more agressive approach to finding candidates. A search for candidates can begin by making use of the Luyton proper motion catalog together with the USNO-A2.0 all-sky astrometric catalog. However, a thorough search would require the all-sky USNO-B proper-motion c...

  2. Primary School Teacher Candidates' Geometric Habits of Mind

    Science.gov (United States)

    Köse, Nilu¨fer Y.; Tanisli, Dilek

    2014-01-01

    Geometric habits of mind are productive ways of thinking that support learning and using geometric concepts. Identifying primary school teacher candidates' geometric habits of mind is important as they affect the development of their future students' geometric thinking. Therefore, this study attempts to determine primary school…

  3. Teacher Candidates' Attitudes to Using Oral History in History Education

    Science.gov (United States)

    Demircioglu, Ebru

    2016-01-01

    The aim of this research is to determine the views of history teacher candidates towards an oral history project carried out in the Special Teaching Method Course of the history pedagogy program of the Fatih Faculty of Education (FFE) at Karadeniz Technical University in Turkey. An open-ended questionnaire and semi-structured interview were the…

  4. Teacher Candidates' Collaboration and Identity in Online Discussions

    Science.gov (United States)

    Bryce, Nadine

    2014-01-01

    In an online context, without facial, verbal or gestural cues, establishing identities through naming social positions appeared essential to effective written communication for graduate pre-service teacher candidates enrolled in a course on literacy education for elementary students. As they engaged in small group asynchronous discussions about…

  5. Selecting Quasar Candidates by a SVM Classification System

    CERN Document Server

    Peng, Nanbo; Zhao, Yongheng; Wu, Xuebing

    2012-01-01

    We develop and demonstrate a classification system constituted by several Support Vector Machines (SVM) classifiers, which can be applied to select quasar candidates from large sky survey projects, such as SDSS, UKIDSS, GALEX. How to construct this SVM classification system is presented in detail. When the SVM classification system works on the test set to predict quasar candidates, it acquires the efficiency of 93.21% and the completeness of 97.49%. In order to further prove the reliability and feasibility of this system, two chunks are randomly chosen to compare its performance with that of the XDQSO method used for SDSS-III's BOSS. The experimental results show that the high faction of overlap exists between the quasar candidates selected by this system and those extracted by the XDQSO technique in the dereddened i-band magnitude range between 17.75 and 22.45, especially in the interval of dereddened i-band magnitude < 20.0. In the two test areas, 57.38% and 87.15% of the quasar candidates predicted by ...

  6. Education of Doctor of Pharmacy Candidates as Mental Health Professionals.

    Science.gov (United States)

    Hayes, Peggy A.; Rosenbluth, Sidney A.

    1980-01-01

    The University of Tennessee offers an educational program to prepare Doctor of Pharmacy candidates for clinical roles in mental health care. The program consists of two core curricular elements: a didactic module and a clinical clerkship that devotes equal time to inpatient and outpatient care. Clinical guidelines and pharmacist goals are…

  7. Recent production of candidate reference materials at IRMM

    Energy Technology Data Exchange (ETDEWEB)

    Kramer, G.N.; Pauwels, J.; Le Guern, L.; Schimmel, H.; Trapmann, S. [Commission of the European Communities, Geel (Belgium). Joint Research Centre

    2001-06-01

    In the execution of its mission to promote a common European measurement system in support of EU policies, IRMM's Reference Materials Unit is currently involved in preparation of proficiency-testing samples and candidate reference materials. Recent work related to bovine spongiform encephalopathy in cows, genetically modified organisms, and a variety of environmental materials is described. (orig.)

  8. A Systematic Search for Exoplanet Candidates in K2 Data

    Science.gov (United States)

    Kahre, Tarryn; Karnes, Katherine L.; Caldwell, Douglas A.; Smith, Jeffrey C.

    2016-01-01

    We present a catalog of 41 promising exoplanet candidates in 33 stellar systems from the K2 Campaign 3 data. The K2 Mission was developed upon the mechanical failure of the second of four reaction wheels, as the Kepler Spacecraft could not continue the original Kepler Mission. The Kepler Mission was a 4-year mission designed to determine the prevalence of exoplanets in our galaxy, and the configuration and diversity of those planetary systems discovered. The K2 Mission has a similar goal, though the spacecraft now points at fields along the ecliptic in ~75 day campaigns (Howell et al. 2014). Although the light curves in K2 data are noisier and have significant motion-induced systematics, it has been shown that there is success in finding exoplanets and exoplanet candidates (Foreman-Mackey et al. 2015; Montet et al. 2015). Utilizing the Transiting Planet Search and Data Validation from the Kepler Processing Pipeline, we systematically search K2 Campaign 3 for potential exoplanet candidates. Setting a 7.1s maximum folded statistic threshold minimum for a minimum of three transit events, we define our initial candidate list. Our list is further narrowed by the results from Data Validation, as it allows us to statistically identify false positives, such as eclipsing binaries or uncorrected roll-drift, in our sample. We further draw parallels between our results and other transit-searching pipeline results published for Campaign 3.

  9. Single transit candidates from K2: detection and period estimation

    Science.gov (United States)

    Osborn, H. P.; Armstrong, D. J.; Brown, D. J. A.; McCormac, J.; Doyle, A. P.; Louden, T. M.; Kirk, J.; Spake, J. J.; Lam, K. W. F.; Walker, S. R.; Faedi, F.; Pollacco, D. L.

    2016-04-01

    Photometric surveys such as Kepler have the precision to identify exoplanet and eclipsing binary candidates from only a single transit. K2, with its 75 d campaign duration, is ideally suited to detect significant numbers of single-eclipsing objects. Here we develop a Bayesian transit-fitting tool (`Namaste: An Mcmc Analysis of Single Transit Exoplanets') to extract orbital information from single transit events. We achieve favourable results testing this technique on known Kepler planets, and apply the technique to seven candidates identified from a targeted search of K2 campaigns 1, 2 and 3. We find EPIC203311200 to host an excellent exoplanet candidate with a period, assuming zero eccentricity, of 540 ^{+410}_{-230} d and a radius of 0.51 ± 0.05RJup. We also find six further transit candidates for which more follow-up is required to determine a planetary origin. Such a technique could be used in the future with TESS, PLATO and ground-based photometric surveys such as NGTS, potentially allowing the detection of planets in reach of confirmation by Gaia.

  10. Supporting Clinical Practice Candidates in Learning Community Development

    Science.gov (United States)

    DeJarnette, Nancy K.; Sudeck, Maria

    2015-01-01

    The purpose of this qualitative research study was to monitor pre-service teacher candidates' progression and implementation of the learning community philosophy along with classroom management strategies. The study took place during their final semester of clinical practice. Data were collected from self-reports, surveys, university supervisor…

  11. Candidate genes of idiopathic pulmonary fibrosis: current evidence and research

    Directory of Open Access Journals (Sweden)

    Zhou W

    2016-02-01

    Full Text Available Wei Zhou,1,2 Yaping Wang1,2 1Department of Medical Genetics, 2Jiangsu Key Laboratory of Molecular Medicine, Nanjing University School of Medicine, Nanjing, People's Republic of China Abstract: Idiopathic pulmonary fibrosis (IPF is a group of common and lethal forms of idiopathic interstitial pulmonary disease. IPF is characterized by a progressive decline in lung function with a median survival of 2–3 years after diagnosis. Although the pathogenesis of the disease remains unknown, genetic predisposition could play a causal role in IPF. A set of genes have been identified as candidate genes of IPF in the past 20 years. However, the recent technological advances that allow for the analysis of millions of polymorphisms in different subjects have deepened the understanding of the genetic complexity of IPF susceptibility. Genome-wide association studies and whole-genome sequencing continue to reveal the genetic loci associated with IPF risk. In this review, we describe candidate genes on the basis of their functions and aim to gain a better understanding of the genetic basis of IPF. The discovered candidate genes may help to clarify pivotal aspects in the diagnosis, prognosis, and therapies of IPF. Keywords: idiopathic pulmonary fibrosis, candidate genes, susceptibility 

  12. Developing the "Pedagogical Efficacy Perception Scale" for Teacher Candidates

    Science.gov (United States)

    Akbaba, Ahmet

    2015-01-01

    This study aims to develop the "Pedagogical Efficacy Perception Scale" for teacher candidates and to compare scale scores. The sample of this survey model study consists of 310 students studying in a faculty of education. The "Pedagogical Efficacy Perception Scale" developed by the author was used for data collection.…

  13. Early Childhood Teacher Candidates Evaluate Computer Software for Young Children

    Science.gov (United States)

    Aldrich, Jennifer

    2002-01-01

    The proliferation of computer software for young children necessitates that early childhood teachers have the knowledge and skills needed to evaluate and select developmentally appropriate software. This article describes the manner in which one university prepares early childhood teacher candidates to analyze software for the young children in…

  14. Supervising PETE Candidates Using the Situational Supervision Model

    Science.gov (United States)

    Levy, Linda S.; Johnson, Lynn V.

    2012-01-01

    Physical education teacher candidates (PETCs) often, as part of their curricular requirements, engage in early field experiences that prepare them for student teaching. Matching the PETC's developmental level with the mentor's supervision style enhances this experience. The situational supervision model, based on the situational leadership model,…

  15. Candidates for Young Super Star Clusters in the Milky Way

    Science.gov (United States)

    Rahman, Mubdi; Matzner, C. D.; Moon, D.

    2011-01-01

    Massive Star Clusters (M > 104 M⊙) have been known to exist throughout the local Universe, but few such objects have been found within our own Galaxy. These clusters the majority of the galactic OB star formation, and thus dramatically alter their surroundings through winds, ionizing flux and radiation pressure, and supernovae, eventually destroying their natal clouds and inflating superbubbles which will erupt from the Galactic plane. We search for the young stellar clusters within the star forming complexes identified by Rahman & Murray (2010) using the WMAP free-free and Spitzer GLIMPSE 8 micron observations. Located far across the Galactic plane, these clusters are highly extinguished and crowded by field stars. Using the 2MASS catalogue, we have developed a method of identifying overdensities of sources with colours consistent with the extinguished upper main sequence coincident with the star forming complexes. The difficulty in this method comes from the large number of overlapping foreground sources in comparison to the expected number of cluster sources in any given candidate cluster. We identify a candidate for the most massive young cluster in the Galaxy (M 105 M⊙), which we have dubbed the Dragonfish Cluster. The candidate cluster is at a distance of 9.7 kpc and has a total ionizing luminosity of 7×1051 photons s-1. We identify nearly 400 OB star candidates associated with the cluster, to be confirmed with near-infrared spectroscopy.

  16. Preparing Teacher Candidates for Family-School Partnerships

    Science.gov (United States)

    de Bruïne, Erica J.; Willemse, T. Martijn; D'Haem, Jeanne; Griswold, Peter; Vloeberghs, Lijne; van Eynde, Sofie

    2014-01-01

    Previous research indicates that, while parent involvement promotes student achievement, how teacher candidates are prepared to establish family-school partnerships (FSP) is not well documented and the roles of teacher educators are often neglected. Explorative studies including curriculum analysis and focus groups of primary and secondary teacher…

  17. Operational support and analysis a guide for ITIL exam candidates

    CERN Document Server

    Sansbury, John

    2014-01-01

    This user-friendly book aims to assist candidates pass the ITIL® OSA Intermediate examination. It references material from the core ITIL texts and gives practical guidance. This new edition includes the latest ITIL guidance as well as additional insights from the author's own experience of developing effective solutions. An ITIL® licensed product.

  18. Functional analysis of candidate ABC transporter proteins for sitosterol transport

    DEFF Research Database (Denmark)

    Albrecht, C; Elliott, J I; Sardini, A;

    2002-01-01

    protein (Bcrp; Abcg2) and the bile salt export pump (Bsep; Abcb11) was assessed using several assays. Unexpectedly, none of the candidate proteins mediated significant sitosterol transport. This has implications for the pathology of sitosterolemia. In addition, the data suggest that otherwise broad...

  19. Generating Genome-Scale Candidate Gene Lists for Pharmacogenomics

    DEFF Research Database (Denmark)

    Hansen, Niclas Tue; Brunak, Søren; Altman, R. B.

    2009-01-01

    A critical task in pharmacogenomics is identifying genes that may be important modulators of drug response. High-throughput experimental methods are often plagued by false positives and do not take advantage of existing knowledge. Candidate gene lists can usefully summarize existing knowledge, bu...

  20. Effects of Critical Thinking Intervention for Early Childhood Teacher Candidates

    Science.gov (United States)

    Han, Heejeong Sophia; Brown, E. Todd

    2013-01-01

    This study is based on an intervention designed to enhance early childhood teacher candidates' critical thinking abilities. The concept, elements, standards, and traits of critical thinking were integrated into the main course contents, and the effects of the intervention were examined. The results indicated that early childhood teacher…

  1. IT Service Management A guide for ITIL Foundation Exam candidates

    CERN Document Server

    Brewster, Ernest; Lawes, Aidan; Sansbury, John

    2012-01-01

    ITIL® is a framework for IT service management and provides best management practice to meet ISO/IEC 20k. This guide introduces ITIL to Foundation Exam candidates and offers a practical understanding of IT service management. The new edition is fully updated and contains several additional processes. An ITIL® licensed product.

  2. NEW YOUNG STAR CANDIDATES IN BRC 27 AND BRC 34

    Energy Technology Data Exchange (ETDEWEB)

    Rebull, L. M.; Laher, R.; Legassie, M. [Spitzer Science Center/Caltech, M/S 220-6, 1200 E. California Blvd., Pasadena, CA 91125 (United States); Johnson, C. H.; Carlson, S.; Clark, M.; Killingstad, N.; Koop, S. [Breck School, 123 Ottawa Avenue N., Golden Valley, MN 55422 (United States); Gibbs, J. C.; Aryal, S.; Canakapalli, T. S. [Glencoe High School, 2700 NW Glencoe Rd., Hillsboro, OR 97124 (United States); Linahan, M.; Ezyk, N.; Fagan, J. [Carmel Catholic High School, One Carmel Parkway, Mundelein, IL 60060 (United States); Sartore, D.; Badura, K. S. [Pine Ridge High School, 926 Howland Blvd., Deltona, FL 32738 (United States); Armstrong, J. D. [Las Cumbres Observatory Global Telescope (LCOGT) Network, Inc., 6740 Cortona Dr. Suite 102, Goleta, CA 93117 (United States); Allen, L. E. [National Optical Astronomy Observatory (NOAO), Tucson, AZ 85719 (United States); McGehee, P. [Infrared Processing and Analysis Center (IPAC), M/S 220-6, 1200 E. California Blvd., Pasadena, CA 91125 (United States); Padgett, D. L., E-mail: rebull@ipac.caltech.edu [NASA' s Goddard Space Flight Center (GSFC), 8800 Greenbelt Rd., Greenbelt, MD 20771 (United States); and others

    2013-01-01

    We used archival Spitzer Space Telescope mid-infrared data to search for young stellar objects (YSOs) in the immediate vicinity of two bright-rimmed clouds, BRC 27 (part of CMa R1) and BRC 34 (part of the IC 1396 complex). These regions both appear to be actively forming young stars, perhaps triggered by the proximate OB stars. In BRC 27, we find clear infrared excesses around 22 of the 26 YSOs or YSO candidates identified in the literature, and identify 16 new YSO candidates that appear to have IR excesses. In BRC 34, the one literature-identified YSO has an IR excess, and we suggest 13 new YSO candidates in this region, including a new Class I object. Considering the entire ensemble, both BRCs are likely of comparable ages, within the uncertainties of small number statistics and without spectroscopy to confirm or refute the YSO candidates. Similarly, no clear conclusions can yet be drawn about any possible age gradients that may be present across the BRCs.

  3. Documenting Teacher Candidates' Professional Growth through Performance Evaluation

    Science.gov (United States)

    Brown, Elizabeth Levine; Suh, Jennifer; Parsons, Seth A.; Parker, Audra K.; Ramirez, Erin M.

    2015-01-01

    In the United States, colleges of education are responding to demands for increased accountability. The purpose of this article is to describe one teacher education program's implementation of a performance evaluation tool during final internship that measures teacher candidates' development across four domains: Planning and Preparation,…

  4. Many-Objective Distinct Candidates Optimization using Differential Evolution

    DEFF Research Database (Denmark)

    Justesen, Peter; Ursem, Rasmus Kjær

    2010-01-01

    paper, we present the novel MODCODE algorithm incorporating the ROD measure to measure and control candidate distinctiveness. MODCODE is tested against GDE3 on three real world centrifugal pump design problems supplied by Grundfos. Our algorithm outperforms GDE3 on all problems with respect to all...

  5. 11 CFR 110.8 - Presidential candidate expenditure limitations.

    Science.gov (United States)

    2010-01-01

    ... section shall be increased in accordance with 11 CFR 110.17. (3) Voting age population is defined at 11 CFR 110.18. (b) The expenditure limitations shall not be considered violated if, after the date of the... expenditure limitation under 11 CFR 9035.1. (d)(1) If an individual is a candidate for more than one...

  6. The Important Candidate Genes in Goats - A Review

    Directory of Open Access Journals (Sweden)

    China SUPAKORN

    2009-01-01

    Full Text Available A total of 271 candidate genes have been detected in goats. However, comprehensive investigations have been carried out on the polymorphism of some genes, involved in the control of economic traits. Candidate genes have an effect on the physiological pathway, metabolism and expression of phenotypes. For growth traits, growth hormone (GH, growth hormone receptor (GHR, insulin like growth factor I (IGF-I, leptin (LEP, caprine pituitary specific transcription factor-1 (POU1F1, caprine myostatin (MSTN and bone morphogenetic protein (BMP genes are necessary for bone formation, birth weight, weaning weight, body condition and muscle growth. For reproduction, forkhead box L 2 (FOXL2, melatonin receptor 1A (MTNR1A, sex determination region of Y chromosome (SRY and amelogenin (AMEL genes influence sex determination and proliferation. The major candidate genes for milk yield and milk composition traits are the casein gene and their family. Keratin associated protein (KAP and melanocortin 1 receptor (MC1R genes are candidate genes for wool traits. The major histocompatibility complex (MHC gene is considered important for the immune system and disease resistance traits. The functions of these genes on economically important traits are different. Some genes have synergistic or antagonistic effects in nature for expression of phenotypic traits. On the other hand, some genes could control more than one trait. Also, the producers should be concerned with these effects because selection of a single trait by using only a gene could affect other traits. Therefore, the identification of candidate genes and their mutations which cause variations of gene expression and phenotype of economic traits will help breeders to search some genetic markers for these economic traits. It may be used as an aid in the selection of parent stock at an early age in the future.

  7. Discovery of optical candidate supernova remnants in Sagittarius

    Science.gov (United States)

    Alikakos, J.; Boumis, P.; Christopoulou, P. E.; Goudis, C. D.

    2012-08-01

    During an [O III] survey of planetary nebulae, we identified a region in Sagittarius containing several candidate supernova remants (SNRs) and obtained deep optical narrow-band images and spectra to explore their nature. We obtained images of the area of interest by acquiring observations in the emission lines of Hα + [N II], [S II] and [O III]. The resulting mosaic covers an area of 1.4° × 1.0°, where both filamentary and diffuse emission was discovered, suggesting that there is more than one SNR in the area. Deep long-slit spectra were also taken of eight different regions. Both the flux-calibrated images and the spectra show that the emission from the filamentary structures originates from shock-heated gas, while the photo-ionization mechanism is responsible for the diffuse emission. Part of the optical emission is found to be correlated with the radio at 4850 MHz suggesting that they are related, while the infrared emission found in the area at 12 μm and 22 μm marginally correlates with the optical. The presence of the [O III] emission line in one of the candidate SNRs implies that the shock velocities in the interstellar "clouds" are between 120 km s-1 and 200 km s-1, while its absence in the other candidate SNRs indicates that the shock velocities there are slower. For all candidate remnants, the [S II] λλ 6716/6731 ratio indicates that the electron densities are below 240 cm-3, while the Hα emission is measured to be between 0.6 and 41 × 10-17 erg s-1 cm-2 arcsec-2. The existence of eight pulsars within 1.5° of the center of the candidate SNRs also implies that there are many SNRs in the area as well as that the detected optical emission could be part of a number of supernovae explosions.

  8. Comparing What Teacher Candidates Know about Each Other: China and the United States

    Science.gov (United States)

    Xu, Tingting; Byker, Erik Jon; Chen, Juan

    2016-01-01

    The purpose of this article is to compare teacher candidates' knowledge and perceptions about China and the United States. Using a survey research design, 91 Chinese teacher candidates and 96 teacher candidates from the United Sates participated. The survey findings indicated that, while both groups of teacher candidates had a basic level of…

  9. The CHAOS-3 Geomagnetic Field Model and Candidates for the 11th Generation IGRF

    DEFF Research Database (Denmark)

    Olsen, Nils; Mandea, Mioara; Sabaka, Terence J.;

    2010-01-01

    As a part of the 11th generation IGRF defined by IAGA, we propose a candidate model for the DGRF 2005, a candidate model for IGRF 2010 and a candidate model for the mean secular variation between 2010 and 2015. These candidate models, the derivation of which is described in the following, are bas...

  10. A Research on the Burnout and the Teaching Profession Attitudes of Teacher Candidates

    Science.gov (United States)

    Kadi, Aysegül; Beytekin, Osman Ferda; Arslan, Hasan

    2015-01-01

    Purpose of this study is to examine burnout and teaching profession attitudes of teacher candidates. Research was conducted with 287 teacher candidates. By the findings; burnout and teaching profession attitudes of teacher candidates don't differ according to their gender. Burnout of teacher candidates differs according to their graduation status…

  11. Robo-AO Kepler Planetary Candidate Survey II: Adaptive Optics Imaging of 969 Kepler Exoplanet Candidate Host Stars

    CERN Document Server

    Baranec, Christoph; Law, Nicholas M; Morton, Tim; Riddle, Reed; Atkinson, Dani; Schonhut, Jessica; Crepp, Justin

    2016-01-01

    We initiated the Robo-AO Kepler Planetary Candidate Survey in 2012 to observe each Kepler exoplanet candidate host star with high-angular-resolution visible-light laser-adaptive-optics imaging. Our goal is to find nearby stars lying in Kepler's photometric apertures that are responsible for the relatively high probability of false-positive exoplanet detections and that cause underestimates of the size of transit radii. Our comprehensive survey will also shed light on the effects of stellar multiplicity on exoplanet properties and will identify rare exoplanetary architectures. In this second part of our ongoing survey, we observed an additional 969 Kepler planet candidate hosts and we report blended stellar companions up to $\\Delta m \\approx 6$ that contribute to Kepler's measured light curves. We found 203 companions within $\\sim$4" of 181 of the Kepler stars, of which 141 are new discoveries. We measure the nearby-star probability for this sample of Kepler planet candidate host stars to be 10.6% $\\pm$ 1.1% a...

  12. Automatic extraction of candidate nomenclature terms using the doublet method

    Directory of Open Access Journals (Sweden)

    Berman Jules J

    2005-10-01

    Full Text Available Abstract Background New terminology continuously enters the biomedical literature. How can curators identify new terms that can be added to existing nomenclatures? The most direct method, and one that has served well, involves reading the current literature. The scholarly curator adds new terms as they are encountered. Present-day scholars are severely challenged by the enormous volume of biomedical literature. Curators of medical nomenclatures need computational assistance if they hope to keep their terminologies current. The purpose of this paper is to describe a method of rapidly extracting new, candidate terms from huge volumes of biomedical text. The resulting lists of terms can be quickly reviewed by curators and added to nomenclatures, if appropriate. The candidate term extractor uses a variation of the previously described doublet coding method. The algorithm, which operates on virtually any nomenclature, derives from the observation that most terms within a knowledge domain are composed entirely of word combinations found in other terms from the same knowledge domain. Terms can be expressed as sequences of overlapping word doublets that have more specific meaning than the individual words that compose the term. The algorithm parses through text, finding contiguous sequences of word doublets that are known to occur somewhere in the reference nomenclature. When a sequence of matching word doublets is encountered, it is compared with whole terms already included in the nomenclature. If the doublet sequence is not already in the nomenclature, it is extracted as a candidate new term. Candidate new terms can be reviewed by a curator to determine if they should be added to the nomenclature. An implementation of the algorithm is demonstrated, using a corpus of published abstracts obtained through the National Library of Medicine's PubMed query service and using "The developmental lineage classification and taxonomy of neoplasms" as a reference

  13. Frictional Behavior of Fe-based Cladding Candidates for PWR

    International Nuclear Information System (INIS)

    After the recent nuclear disaster at Fukushima Daiichi reactors, there is a growing consensus on the development of new fuel systems (i.e., accident-tolerant fuel, ATF) that have high safety margins under design-basis accident (DBA) and beyond design-basis accident (BDBA). A common objective of various developing candidates is to archive the outstanding corrosion-resistance under severe accidents such as DBA and DBDA conditions for decreasing hydrogen production and increasing coping time to respond to severe accidents. ATF could be defined as new fuel/cladding system with enhanced accident tolerant to loss of active cooling in the core for a considerably longer time period under severe accidents while maintaining or improving the fuel performance during normal operations. This means that, in normal operating conditions, new fuel systems should be applicable to current operating PWRs for suppressing various degradation mechanisms of current fuel assembly without excessive design changes. When considering that one of the major degradation mechanisms of PWR fuel assemblies is a grid-to-rod fretting (GTRF), it is necessary to examine the tribological behavior of various ATF candidates at initial development stage. In this study, friction and reciprocating wear behavior of two kinds of Fe-based ATF candidates were examined with a reciprocating wear tests at room temperature (RT) air and water. The objective is to examine the compatibilities of these Fe-based alloys against current Zr-based alloy properties, which is used as major structural materials of PWR fuel assemblies. The reciprocating wear behaviors of Fe-based accident-tolerant fuel cladding candidates against current Zr-based alloy has been studied using a reciprocating sliding wear tester in room temperature air and water. Frictional behavior and wear depth were used for evaluating the applicability and compatibilities of Fe-based candidates without significant design changes of PWR fuel assemblies

  14. Frictional Behavior of Fe-based Cladding Candidates for PWR

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Young-Ho; Kim, Hyung-Kyu [Korea Atomic Energy Research Institute, Daejeon (Korea, Republic of); Byun, Thak Sang [Oak Ridge National Lab., Oak Ridge (United States)

    2014-10-15

    After the recent nuclear disaster at Fukushima Daiichi reactors, there is a growing consensus on the development of new fuel systems (i.e., accident-tolerant fuel, ATF) that have high safety margins under design-basis accident (DBA) and beyond design-basis accident (BDBA). A common objective of various developing candidates is to archive the outstanding corrosion-resistance under severe accidents such as DBA and DBDA conditions for decreasing hydrogen production and increasing coping time to respond to severe accidents. ATF could be defined as new fuel/cladding system with enhanced accident tolerant to loss of active cooling in the core for a considerably longer time period under severe accidents while maintaining or improving the fuel performance during normal operations. This means that, in normal operating conditions, new fuel systems should be applicable to current operating PWRs for suppressing various degradation mechanisms of current fuel assembly without excessive design changes. When considering that one of the major degradation mechanisms of PWR fuel assemblies is a grid-to-rod fretting (GTRF), it is necessary to examine the tribological behavior of various ATF candidates at initial development stage. In this study, friction and reciprocating wear behavior of two kinds of Fe-based ATF candidates were examined with a reciprocating wear tests at room temperature (RT) air and water. The objective is to examine the compatibilities of these Fe-based alloys against current Zr-based alloy properties, which is used as major structural materials of PWR fuel assemblies. The reciprocating wear behaviors of Fe-based accident-tolerant fuel cladding candidates against current Zr-based alloy has been studied using a reciprocating sliding wear tester in room temperature air and water. Frictional behavior and wear depth were used for evaluating the applicability and compatibilities of Fe-based candidates without significant design changes of PWR fuel assemblies

  15. Candidates and prospects of detection for particle dark matter

    International Nuclear Information System (INIS)

    The mystery of what makes up the non-baryonic mass in the universe has deepened. Cosmological measurements tell us with high significance that baryons only make up 4 to 5 percent of critical density, whereas CMB and other measurements point to a total relative matter density of around 30 percent. Although the simplest possibilities like massive neutrinos are ruled out as the main component of dark matter, there are several other, belonging to extensions of the Standard Model which are becoming more and more plausible. Supersymmetric particles are among these favoured candidates, but there are also others based on extra dimensions and other current theoretical ideas. The hunt for dark matter will intensify in the coming years with a large set of accelerator, direct detection and indirect detection experiments each having a fair chance of making the first detection. The talk will cover some of the different particle dark matter candidates and their detection properties. (author)

  16. On the Low False Positive Probabilities of Kepler Planet Candidates

    CERN Document Server

    Morton, Timothy D

    2011-01-01

    We present a framework to conservatively estimate the probability that any particular planet-like transit signal observed by the Kepler mission is in fact a planet, prior to any ground-based follow-up efforts. We use Monte Carlo methods based on stellar population synthesis and Galactic structure models, and we provide empirical analytic fits to our results that may be applied to the as-yet-unconfirmed Kepler candidates. We find that the false positive probability for candidates that pass preliminary Kepler vetting procedures is generally 20% to < 2%, assuming a continuous power law for the planet mass function with index alpha = -1.5. Since Kepler will detect many more planetary signals than can be positively confirmed with ground-based follow-up efforts in the near term, these calculations will be crucial to using the ensemble of Kepler data to determine population characteristic s of planetary systems.

  17. Degradation mode surveys of high performance candidate container materials

    Energy Technology Data Exchange (ETDEWEB)

    Gdowski, G.E.; McCright, R.D.

    1990-12-01

    Corrosion resistant materials are being considered for the metallic barrier of the Yucca Mountain Project`s high-level radioactive waste disposal containers. Nickel-chromium-molybdenum alloys and titanium alloys have good corrosion resistance properties and are considered good candidates for the metallic barrier. The localized corrosion phenomena, pitting and crevice corrosion, are considered as potentially limiting for the barrier lifetime. An understanding of the mechanisms of localized corrosion and of how various parameters affect it will be necessary for adequate performance assessment of candidate container materials. Examples of some of the concerns involving localized corrosion are discussed. The effects of various parameters, such as temperature and concentration of halide species, on localized corrosion are given. In addition, concerns about aging of the protective oxide layer in the expected service temperature range (50 to 250{degree}C) are presented. Also some mechanistic considerations of localized corrosion are given. 45 refs., 1 tab.

  18. Identifying False Alarms in the Kepler Planet Candidate Catalog

    CERN Document Server

    Mullally, F; Thompson, Susan E; Christiansen, Jessie; Burke, Christopher; Clarke, Bruce D; Haas, Michael R

    2016-01-01

    We present a new automated method to identify instrumental features masquerading as small, long period planets in the \\kepler\\ planet candidate catalog. These systematics, mistakenly identified as planet transits, can have a strong impact on occurrence rate calculations because they cluster in a region of parameter space where Kepler's sensitivity to planets is poor. We compare individual transit-like events to a variety of models of real transits and systematic events, and use a Bayesian Information Criterion to evaluate the likelihood that each event is real. We describe our technique and test its performance on simulated data. Results from this technique are incorporated in the \\kepler\\ Q1-17 DR24 planet candidate catalog of \\citet{Coughlin15}.

  19. PTPS Candidate Exoplanet Host Star Radii Determination with CHARA Array

    CERN Document Server

    Zielinski, Pawel; Baines, Ellyn; Niedzielski, Andrzej; Wolszczan, Aleksander

    2012-01-01

    We propose to measure the radii of the Penn State - Torun Planet Search (PTPS) exoplanet host star candidates using the CHARA Array. Stellar radii estimated from spectroscopic analysis are usually inaccurate due to indirect nature of the method and strong evolutionary model dependency. Also the so-called degeneracy of stellar evolutionary tracks due to convergence of many tracks in the giant branch decreases the precision of such estimates. However, the radius of a star is a critical parameter for the calculation of stellar luminosity and mass, which are often not well known especially for giants. With well determined effective temperature (from spectroscopy) and radius the luminosity may be calculated precisely. In turn also stellar mass may be estimated much more precisely. Therefore, direct radii measurements increase precision in the determination of planetary candidates masses and the surface temperatures of the planets.

  20. Current understanding of increased insulin sensitivity after exercise - emerging candidates

    DEFF Research Database (Denmark)

    Maarbjerg, Stine Just; Sylow, Lykke; Richter, Erik

    2011-01-01

    Exercise counteracts insulin resistance and improves glucose homeostasis in many ways. Apart from increasing muscle glucose uptake quickly, exercise also clearly increases muscle insulin sensitivity in the post exercise period. This review will focus on the mechanisms responsible for this increased...... signaling component in the insulin signaling pathway such as aPKC, Rac1, TBC1D4 and TBC1D1 have been described. These are all affected by both insulin and exercise which means that they are likely converging points in promoting GLUT4 translocation and therefore possible candidates for regulating insulin...... sensitivity after exercise. Whereas TBC1D1 does not appear to regulate insulin sensitivity after exercise, correlative evidence in contrast suggests TBC1D4 to be a relevant candidate. Little is known about aPKC and Rac1 in relation to insulin sensitivity after exercise. Besides mechanisms involved in...

  1. Tests of candidate materials for particle bed reactors

    International Nuclear Information System (INIS)

    Rhenium metal hot frits and zirconium carbide-coated fuel particles appear suitable for use in flowing hydrogen to at least 2000 K, based on previous tests. Recent tests on alternate candidate cooled particle and frit materials are described. Silicon carbide-coated particles began to react with rhenium frit material at 1600 K, forming a molten silicide at 2000 K. Silicon carbide was extensively attacked by hydrogen at 2066 K for 30 minutes, losing 3.25% of its weight. Vitrous carbon was also rapidly attacked by hydrogen at 2123 K, losing 10% of its weight in two minutes. Long term material tests on candidate materials for closed cycle helium cooled particle bed fuel elements are also described. Surface imperfections were found on the surface of pyrocarbon-coated fuel particles after ninety days exposure to flowing (∼500 ppM) impure helium at 1143 K. The imperfections were superficial and did not affect particle strength

  2. A novel live-attenuated vaccine candidate for mayaro Fever.

    Directory of Open Access Journals (Sweden)

    William J Weise

    2014-08-01

    Full Text Available Mayaro virus (MAYV is an emerging, mosquito-borne alphavirus that causes a dengue-like illness in many regions of South America, and which has the potential to urbanize. Because no specific treatment or vaccine is available for MAYV infection, we capitalized on an IRES-based approach to develop a live-attenuated MAYV vaccine candidate. Testing in infant, immunocompetent as well as interferon receptor-deficient mice demonstrated a high degree of attenuation, strong induction of neutralizing antibodies, and efficacy against lethal challenge. This vaccine strain was also unable to infect mosquito cells, a major safety feature for a live vaccine derived from a mosquito-borne virus. Further preclinical development of this vaccine candidate is warranted to protect against this important emerging disease.

  3. Identifying False Alarms in the Kepler Planet Candidate Catalog

    Science.gov (United States)

    Mullally, F.; Coughlin, Jeffery L.; Thompson, Susan E.; Christiansen, Jessie; Burke, Christopher; Clarke, Bruce D.; Haas, Michael R.

    2016-07-01

    We present a new automated method to identify instrumental features masquerading as small, long-period planets in the Kepler planet candidate catalog. These systematics, mistakenly identified as planet transits, can have a strong impact on occurrence rate calculations because they cluster in a region of parameter space where Kepler’s sensitivity to planets is poor. We compare individual transit-like events to a variety of models of real transits and systematic events and use a Bayesian information criterion to evaluate the likelihood that each event is real. We describe our technique and test its performance on simulated data. Results from this technique are incorporated in the Kepler Q1–Q17 DR24 planet candidate catalog of Coughlin et al.

  4. Degradation mode surveys of high performance candidate container materials

    International Nuclear Information System (INIS)

    Corrosion resistant materials are being considered for the metallic barrier of the Yucca Mountain Project's high-level radioactive waste disposal containers. Nickel-chromium-molybdenum alloys and titanium alloys have good corrosion resistance properties and are considered good candidates for the metallic barrier. The localized corrosion phenomena, pitting and crevice corrosion, are considered as potentially limiting for the barrier lifetime. An understanding of the mechanisms of localized corrosion and of how various parameters affect it will be necessary for adequate performance assessment of candidate container materials. Examples of some of the concerns involving localized corrosion are discussed. The effects of various parameters, such as temperature and concentration of halide species, on localized corrosion are given. In addition, concerns about aging of the protective oxide layer in the expected service temperature range (50 to 250 degree C) are presented. Also some mechanistic considerations of localized corrosion are given. 45 refs., 1 tab

  5. Ground state occupation probabilities of neutrinoless double beta decay candidates

    Science.gov (United States)

    Kotila, Jenni; Barea, Jose

    2015-10-01

    A better understanding of nuclear structure can offer important constraints on the calculation of 0 νββ nuclear matrix elements. A simple way to consider differences between initial and final states of neutrinoless double beta decay candidates is to look at the ground state occupation probabilities of initial and final nuclei. As is well known, microscopic interacting boson model (IBM-2) has found to be very useful in the description of detailed aspects of nuclear structure. In this talk I will present results for ground state occupation probabilities obtained using IBM-2 for several interesting candidates of 0 νββ -decay. Comparison with recent experimental results is also made. This work was supported Academy of Finland (Project 266437) and Chilean Ministry of Education (Fondecyt Grant No. 1150564),

  6. Leadership scheme to develop the careers of talented candidates.

    Science.gov (United States)

    Lynas, Karen

    2012-02-01

    The Top Leaders programme supports career development by identifying talented staff and equipping them with a range of management skills and approaches. The programme uses a diagnostic test to help candidates assess their strengths, leadership styles and development needs, and offers them 360 degrees feedback. This enables them to identify areas they need to develop to be effective and supportive leaders. Two case studies illustrate the programme in action. PMID:22439500

  7. Predicting sensation seeking from dopamine genes: A candidate system approach

    OpenAIRE

    Derringer, Jaime; Robert F Krueger; Dick, Danielle M; Saccone, Scott; Grucza, Richard A.; Agrawal, Arpana; Lin, Peng; Almasy, Laura; Edenberg, Howard J.; Foroud, Tatiana; Nurnberger, John I.; Hesselbrock, Victor M.; Kramer, John R.; Kuperman, Samuel; Porjesz, Bernice

    2010-01-01

    Sensation seeking is a heritable personality trait that has been reliably linked to behavior disorders. The dopamine system has been hypothesized to contribute to individual differences in sensation seeking, and both experimental and observational studies in humans and non-human animals provide evidence for this relationship. We present here a candidate-system approach to genetic association analysis of sensation seeking, in which single nucleotide polymorphisms (SNPs) from a number of dopami...

  8. Road pricing as a citizen-candidate game

    OpenAIRE

    Marcucci, Edoardo; Marini, Marco A.; Ticchi, Davide

    2005-01-01

    We construct a political economy model to analyze the political acceptability of road pricing policies. We use a citizen-candidate framework with a population composed by three groups differing for their income level. We show that road pricing policies are never applied when there is no redistribution of the resources in favour of other modes of transport or when the congestion of these types of transport is relatively high. The results suggest that the efficiency of the redistrib...

  9. Road pricing as a citizen-candidate game

    OpenAIRE

    Marcucci, Edoardo; Marini, Marco

    2005-01-01

    We construct a political economy model to analyze the political acceptability of road pricing policies. We use a citizen-candidate framework with a population composed by three groups differing for their income level. We show that road pricing policies are never applied when there is no redistribution of the resources in favour of other modes of transport or when the congestion of these types of transport is relatively high. The results suggest that the efficiency of the redistribution of res...

  10. Characteristics of Oral Abnormalities in Liver Transplant Candidates

    OpenAIRE

    Guggenheimer, J.; Close, J. M.; Eghtesad, B; Shay, C.

    2010-01-01

    Background: Several oral mucosal abnormalities have been reported to occur more frequently in patients with liver disease. It has, however, not been determined if these conditions are related to the disease or are manifestations of extraneous factors not associated with the liver pathology. Objective: To identify and quantify oral abnormalities in candidates for liver transplantation, and to determine whether these conditions were correlated with the type of liver disease or were the result o...

  11. Identification of new transitional disk candidates in Lupus with Herschel

    Science.gov (United States)

    Bustamante, I.; Merín, B.; Ribas, Á.; Bouy, H.; Prusti, T.; Pilbratt, G. L.; André, Ph.

    2015-06-01

    Context. New data from the Herschel Space Observatory are broadening our understanding of the physics and evolution of the outer regions of protoplanetary disks in star-forming regions. In particular they prove to be useful for identifying transitional disk candidates. Aims: The goals of this work are to complement the detections of disks and the identification of transitional disk candidates in the Lupus clouds with data from the Herschel Gould Belt Survey. Methods: We extracted photometry at 70, 100, 160, 250, 350, and 500 μm of all spectroscopically confirmed Class II members previously identified in the Lupus regions and analyzed their updated spectral energy distributions. Results: We have detected 34 young disks in Lupus in at least one Herschel band, from an initial sample of 123 known members in the observed fields. Using recently defined criteria, we have identified five transitional disk candidates in the region. Three of them are new to the literature. Their PACS-70 μm fluxes are systematically higher than those of normal T Tauri stars in the same associations, as already found in T Cha and in the transitional disks in the Chamaeleon molecular cloud. Conclusions: Herschel efficiently complements mid-infrared surveys for identifying transitional disk candidates and confirms that these objects seem to have substantially different outer disks than the T Tauri stars in the same molecular clouds. Herschel is an ESA space observatory with science instruments provided by European-led Principal Investigator consortia and with important participation from NASA.Tables 5-7 and Figs. 3 and 4 are available in electronic form at http://www.aanda.org

  12. Slitrks as emerging candidate genes involved in neuropsychiatric disorders

    OpenAIRE

    Proenca, Catia C.; Gao, Kate P.; Shmelkov, Sergey V.; Rafii, Shahin; Lee, Francis S

    2011-01-01

    Slitrks are a family of structurally-related transmembrane proteins belonging to the leucine-rich repeat (LRR) superfamily. Six family members exist (Slitrk1–Slitrk6), and all are highly expressed in the central nervous system (CNS). Slitrks have been implicated in mediating basic neuronal processes ranging from neurite outgrowth and dendritic elaboration to neuronal survival. Recent studies in humans and genetic mouse models have led to the identification of Slitrks as candidate genes that m...

  13. Identifying False Alarms in the Kepler Planet Candidate Catalog

    OpenAIRE

    Mullally, F.; Coughlin, Jeffery L.; Thompson, Susan E.; Christiansen, Jessie; Burke, Christopher; Clarke, Bruce D.; Haas, Michael R.

    2016-01-01

    We present a new automated method to identify instrumental features masquerading as small, long period planets in the \\kepler\\ planet candidate catalog. These systematics, mistakenly identified as planet transits, can have a strong impact on occurrence rate calculations because they cluster in a region of parameter space where Kepler's sensitivity to planets is poor. We compare individual transit-like events to a variety of models of real transits and systematic events, and use a Bayesian Inf...

  14. Three new optical nova candidates in M 31

    Science.gov (United States)

    Pietsch, W.; Henze, M.; Burwitz, V.; Kaur, A.; Hartmann, D. H.; Williams, G.; Milne, P.

    2011-06-01

    We report the discovery of three nova candidates in M 31 on 7x60s stacked R filter CCD images obtained with the robotic 60cm telescope with an E2V CCD (2kx2k, 13.5 micron sq. pixels) of the Livermore Optical Transient Imaging System (Super-LOTIS, located at Steward Observatory, Kitt Peak, Arizona, USA) on 2011 June 7.418 UT. The objects are visible on all individual images.

  15. SPECTROSCOPY OF FAINT KEPLER MISSION EXOPLANET CANDIDATE HOST STARS

    International Nuclear Information System (INIS)

    Stellar properties are measured for a large set of Kepler mission exoplanet candidate host stars. Most of these stars are fainter than 14th magnitude, in contrast to other spectroscopic follow-up studies. This sample includes many high-priority Earth-sized candidate planets. A set of model spectra are fitted to R ∼ 3000 optical spectra of 268 stars to improve estimates of Teff, log (g), and [Fe/H] for the dwarfs in the range 4750 ≤ Teff ≤ 7200 K. These stellar properties are used to find new stellar radii and, in turn, new radius estimates for the candidate planets. The result of improved stellar characteristics is a more accurate representation of this Kepler exoplanet sample and identification of promising candidates for more detailed study. This stellar sample, particularly among stars with Teff ∼> 5200 K, includes a greater number of relatively evolved stars with larger radii than assumed by the mission on the basis of multi-color broadband photometry. About 26% of the modeled stars require radii to be revised upward by a factor of 1.35 or greater, and modeling of 87% of the stars suggest some increase in radius. The sample presented here also exhibits a change in the incidence of planets larger than 3-4 R⊕ as a function of metallicity. Once [Fe/H] increases to ≥ – 0.05, large planets suddenly appear in the sample while smaller planets are found orbiting stars with a wider range of metallicity. The modeled stellar spectra, as well as an additional 84 stars of mostly lower effective temperatures, are made available to the community.

  16. Novel approaches to identify protective malaria vaccine candidates

    OpenAIRE

    Chia, Wan Ni; Goh, Yun Shan; Rénia, Laurent

    2014-01-01

    Efforts to develop vaccines against malaria have been the focus of substantial research activities for decades. Several categories of candidate vaccines are currently being developed for protection against malaria, based on antigens corresponding to the pre-erythrocytic, blood stage, or sexual stages of the parasite. Long lasting sterile protection from Plasmodium falciparum sporozoite challenge has been observed in human following vaccination with whole parasite formulations, clearly demonst...

  17. Genetics of intracerebral hemorrhage: Insights from candidate gene approaches

    OpenAIRE

    Baoqiong Liu; Le Zhang; Qidong Yang

    2012-01-01

    Intracerebral hemorrhage (ICH) is a heterogeneous disease with genetic factors playing an important role. Association studies on a wide range of candidate pathways suggest a weak but significant effect for several alleles with ICH risk. Among the most widely investigated genes are those involved in the renin-angiotensin-aldosterone system (e.g., angiotensin-converting enzyme), coagulation pathway (e.g., Factor XIII, Factor VII, platelet-activating factor acetylhydrolase, Factor V Leiden, and ...

  18. Identification of a candidate stem cell in human gallbladder

    OpenAIRE

    Rohan Manohar; Yaming Li; Helene Fohrer; Lynda Guzik; Donna Beer Stolz; Uma R. Chandran; LaFramboise, William A.; Eric Lagasse

    2015-01-01

    There are currently no reports of identification of stem cells in human gallbladder. The differences between human gallbladder and intrahepatic bile duct (IHBD) cells have also not been explored. The goals of this study were to evaluate if human fetal gallbladder contains a candidate stem cell population and if fetal gallbladder cells are distinct from fetal IHBD cells. We found that EpCAM+CD44+CD13+ cells represent the cell population most enriched for clonal self-renewal from primary gallbl...

  19. Event display of a H -> 4mu candidate event

    CERN Multimedia

    ATLAS, Collaboration

    2012-01-01

    Event display of a H -> 4mu candidate event with m(4l) = 124.1 (125.1) GeV without (with) Z mass constraint. The masses of the lepton pairs are 86.3 GeV and 31.6 GeV. The event was recorded by ATLAS on 10-Jun-2012, 13:24:31 CEST in run number 204769 as event number 71902630. Zoom into the tracking detector. Muon tracks are colored red.

  20. Event display of a H -> 4mu candidate event

    CERN Multimedia

    ATLAS, Collaboration

    2012-01-01

    Event display of a H -> 4mu candidate event with m(4l) = 124.1 (125.1) GeV without (with) Z mass constraint. The masses of the lepton pairs are 86.3 GeV and 31.6 GeV. The event was recorded by ATLAS on 10-Jun-2012, 13:24:31 CEST in run number 204769 as event number 71902630. Muon tracks are colored red.

  1. Association of candidate genes with antisocial drug dependence in adolescents

    OpenAIRE

    Corley, Robin P.; Zeiger, Joanna S.; Crowley, Thomas; Ehringer, Marissa A.; Hewitt, John K.; Christian J Hopfer; Lessem, Jeffrey; McQueen, Matthew B.; Rhee, Soo Hyun; Smolen, Andrew; Stallings, Michael C.; Young, Susan E.; Krauter, Kenneth

    2008-01-01

    The Colorado Center for Antisocial Drug Dependence (CADD) is using several research designs and strategies in its study of the genetic basis for antisocial drug dependence in adolescents. This study reports Single Nucleotide Polymorphism (SNP) association results from a Targeted Gene Assay (SNP chip) of 231 Caucasian male probands in treatment with antisocial drug dependence and a matched set of community controls. The SNP chip was designed to assay 1500 SNPs distributed across 50 candidate g...

  2. Fruit and Oil Characteristics of Olive Candidate Cultivars from Turkey

    Directory of Open Access Journals (Sweden)

    Yasin OZDEMIR

    2016-06-01

    Full Text Available This is the first study in Turkey that evaluated olive fruit and oil characteristics of 23 cultivar candidates selected among 393 olive genotypes, on the bases of agronomical characteristics; the candidate cultivars were obtained by cross breeding between standard cultivars (‘Gemlik’, ‘Edinciksu’, ‘Uslu’, ‘Tavşan Yüreği’, ‘Karamürselsu’ and foreign cultivars (‘Lucques’, ‘Belle d’Espagne’ and ‘Manzanilla’. Fruit traits such as fruit weight, flesh to seed ratio, fruit and seed size, as well as oil characteristics such as moisture, oil content, specific absorption at ultraviolet light, free acid content, peroxide value, chlorophyll and fatty acid composition were determined. Fruits and oils of intensely cultivated ‘Gemlik’ and ‘Ayvalık’ olive cultivars were also analyzed to compare them with the new candidate cultivars. According to the oil content, ‘GE067’ (23.30%, ‘GE181’ (23.97%, ‘GE366’ (22.52%, ‘GE417’ (22.16%, ‘GT009’ (24.14%, ‘GT014’ (21.02%, ‘GU247’ (22.48%, ‘GU320’ (27.15% and ‘GU434’ (21.89% gave better results, thus having good potential for registration as new cultivars for oil production. ‘GE366’ and ‘GU434’ were determined as the best cultivar candidates for producing dual purpose olives (table olives and oil. ‘GE363’ had the best fatty acid composition, which is an important feature in terms of oxidative stability and disease prevention.

  3. Investigating mathematics teacher candidates opinions about using information & communication technologies

    OpenAIRE

    Selahattin Arsan; Tamer Kutluca; İlknur Özpınar

    2011-01-01

    As it has changed all fields in our lives, technological advancements have also improved education in such a large extent that integrating technology into education is inevitable. For this reason, teachers and teacher candidates are supposed to get acquainted with technology related information and skills. This study was conducted to determine the pre-service mathematics teachers’ opinions about information and communication technologies. A questionnaire was applied to 104 mathematics teacher...

  4. Optimal selection policies for a sequence of candidate drugs

    OpenAIRE

    Charalambous, C.; Gittins, J. C.

    2008-01-01

    Pharmaceutical companies have to face huge risks and enormous costs of production before they can produce a drug. Efficient allocation of resources is essential to help in maximizing profits. Yu and Gittins (2007) described a model and associated software for determining efficient allocations for a preclinical research project. This is the starting point for this paper. We provide explicit optimal policies for the selection of successive candidate drugs for two restricted...

  5. Identification of 11 potential malaria vaccine candidates using Bioinformatics

    OpenAIRE

    Isea, Raul

    2010-01-01

    In this paper, we suggested eleven protein targets to be used as possible vaccines against Plasmodium falciparum causative agent of almost two to three million deaths per year. A comprehensive analysis of protein target have been selected from the small experimental fragment of antigen in the P. falciparum genome, all of them common to the four stages of the parasite life cycle (i.e., sporozoites, merozoites, trophozoites and gametocytes). The potential vaccine candidates should be analyzed i...

  6. Scalar Dark Matter Candidates in Two Inert Higgs Doublet Model

    CERN Document Server

    Fortes, E C F S; Montaño, J; Pleitez, V

    2014-01-01

    We study a two scalar inert doublet model (IDMS$_3$) which is stabilized by a $S_3$ symmetry. We consider two scenarios: i) two of the scalars in each charged sector are mass degenerated due to a residual $Z_2$ symmetry, ii) there is no mass degeneracy because of the introduction of soft terms that break the $Z_2$ symmetry. We show that both scenarios provide good dark matter candidates for some range of parameters.

  7. Women Candidates and Arab Media: Challenging Conservatism in Bahraini Politics

    OpenAIRE

    Otaibi, May Al

    2011-01-01

    Women have yet to enter to Bahrain’s parliament despite being permitted to run for some years. With its king promoting social and economic change, the media has portrayed positive images of Arab women as professionals against a backdrop of religious conservatism. The communications strategy adopted by some women candidates to attain election to parliament and the response of the local media are analysed utilizing content analysis. Despite some variation of coverage, the media in this Persian ...

  8. Searches for millisecond pulsar candidates among the unidentified Fermi objects

    CERN Document Server

    Hui, C Y; Hu, C P; Lin, L C C; Li, K L; Kong, A K H; Tam, P H T; Takata, J; Cheng, K S; Jin, Ruolan; Yen, T -C; Kim, Chunglee

    2015-01-01

    Here we report the results of searching millisecond pulsar (MSP) candidates from the Fermi LAT second source catalog (2FGL). Seven unassociated $\\gamma-$ray sources in this catalog are identified as promising MSP candidates based on their $\\gamma$-ray properties. Through the X-ray analysis, we have detected possible X-ray counterparts, localized to an arcsecond accuracy. We have systematically estimated their X-ray fluxes and compared with the corresponding $\\gamma$-ray fluxes. The X-ray to $\\gamma$-ray flux ratios for 2FGL J1653.6-0159 and 2FGL J1946.4-5402 are comparable with the typical value for pulsars. For 2FGL J1625.2-0020, 2FGL J1653.6-0159 and 2FGL J1946.4-5402, their candidate X-ray counterparts are bright enough for performing a detailed spectral and temporal analysis to discriminate their thermal/non thermal nature and search for the periodic signal. We have also searched for possible optical/IR counterparts at the X-ray positions. For the optical/IR source coincident with the brightest X-ray obje...

  9. THE EVALUATION OF THE MOTIVATIONS OF TEACHER CANDIDATES

    Directory of Open Access Journals (Sweden)

    Zuhal ÇELİKTÜRK

    2013-06-01

    Full Text Available The aim in this study is to define the reading profiles of teacher candidates in terms of text/reading types and reading purposes. The study is designed as a screening type, qualitative research. 65 teacher candidates from Mehmet Akif Ersoy University are selected with random sampling to take place in the study. The data is collected by the interview method, which is a qualitative research method. An interview form named “Motivation to Read Profile”, that is adapted by researchers, is used as the tool for data collection. Data is analyzed by content analyzing. At the end of the study it’s determined that, 80% of the teacher candidates have high motivations to read; and they usually read to acquire information, get the help of their teachers ad friends to choose books, use internet a lot for finding reading materials, and they don’t usually carry books with themselves, yet they read at home and library. Also, the results show that the readings at home are usually news/newspapers on the internet, and the readings at library are more generally for research and homework; because of this, readings at library are more focused on books and magazines.

  10. Examining My Assessment Literacy Instruction Practices with Teacher Candidates

    Directory of Open Access Journals (Sweden)

    Mary Rice

    2011-12-01

    Full Text Available In this self-study, the author examines her teacher education practices in preparing teacher candidates to assess the literacy of English learners (ELs. According to Lee (2007, disciplinary literary is essential to supporting students in becoming active in democratic pursuits. Conceptualizing literacy in this broader way for teacher candidates and then promoting the exclusive use of tools like fluency exercises and comprehension inventories for their classroom practice seems like a mixed message. The author identified three concepts from the course materials that she determined were important for teacher candidates to consider in assessing literacy development in ELs. These were (a notions of ELs preexisting literacy in their native languages, in particularly in content area subject matter for curriculum-making, (b fundamental understandings about second language acquisition, and (c knowledge of measurement practices as an avenue for advocacy. These three ideas framed the literature reviewed for this study and positioned the author to use narrative accounts of her teaching as data which yielded findings.

  11. Identification of candidate genes for dyslexia susceptibility on chromosome 18.

    Directory of Open Access Journals (Sweden)

    Thomas S Scerri

    Full Text Available Six independent studies have identified linkage to chromosome 18 for developmental dyslexia or general reading ability. Until now, no candidate genes have been identified to explain this linkage. Here, we set out to identify the gene(s conferring susceptibility by a two stage strategy of linkage and association analysis.Linkage analysis: 264 UK families and 155 US families each containing at least one child diagnosed with dyslexia were genotyped with a dense set of microsatellite markers on chromosome 18. Association analysis: Using a discovery sample of 187 UK families, nearly 3000 SNPs were genotyped across the chromosome 18 dyslexia susceptibility candidate region. Following association analysis, the top ranking SNPs were then genotyped in the remaining samples. The linkage analysis revealed a broad signal that spans approximately 40 Mb from 18p11.2 to 18q12.2. Following the association analysis and subsequent replication attempts, we observed consistent association with the same SNPs in three genes; melanocortin 5 receptor (MC5R, dymeclin (DYM and neural precursor cell expressed, developmentally down-regulated 4-like (NEDD4L.Along with already published biological evidence, MC5R, DYM and NEDD4L make attractive candidates for dyslexia susceptibility genes. However, further replication and functional studies are still required.

  12. Identification of new transitional disk candidates in Lupus with Herschel

    CERN Document Server

    Bustamante, I; Ribas, Á; Bouy, H; Prusti, T; Pilbratt, G L; André, Ph

    2015-01-01

    New data from the Herschel Space Observatory are broadening our understanding of the physics and evolution of the outer regions of protoplanetary disks in star forming regions. In particular they prove to be useful to identify transitional disk candidates. The goals of this work are to complement the detections of disks and the identification of transitional disk candidates in the Lupus clouds with data from the Herschel Gould Belt Survey. We extracted photometry at 70, 100, 160, 250, 350 and 500 $\\mu$m of all spectroscopically confirmed Class II members previously identified in the Lupus regions and analyzed their updated spectral energy distributions. We have detected 34 young disks in Lupus in at least one Herschel band, from an initial sample of 123 known members in the observed fields. Using the criteria defined in Ribas et al. (2013) we have identified five transitional disk candidates in the region. Three of them are new to the literature. Their PACS-70 $\\mu$m fluxes are systematically higher than thos...

  13. Universal behaviors as candidate traditions in wild spider monkeys.

    Directory of Open Access Journals (Sweden)

    Claire J Santorelli

    Full Text Available Candidate traditions were documented across three communities of wild spider monkeys (Ateles geoffroyi using an a priori approach to identify behavioral variants and a statistical approach to examine differences in their proportional use. This methodology differs from previous studies of animal traditions, which used retrospective data and relied on the 'exclusion method' to identify candidate traditions. Our a priori approach increased the likelihood that behavior variants with equivalent functions were considered and our statistical approach enabled the proportional use of 'universal' behaviors, i.e., used across all communities, to be examined for the first time in any animal species as candidate traditions. Among universal behaviors we found 14 'community preferred' variants. After considering the extent to which community preferred variants were due to ecological and, to a lesser degree, genetic differences, we concluded that at least six were likely maintained through social learning. Our findings have two main implications: (i tradition repertoires could be larger than assumed from previous studies using the exclusion method; (ii the relative use of universal behavior variants can reinforce community membership.

  14. First microlensing candidate towards M31 from Nainital Microlensing Survey

    CERN Document Server

    Joshi, Y C; Narasimha, D; Sagar, R

    2004-01-01

    We report our first microlensing candidate NMS-E1 towards M31 from the data accumulated during four years long Nainital Microlensing Survey. Cousin R and I band observations of ~13'x13' field in the direction of M31 were carried out since 1998 and data is analysed using pixel technique proposed by the AGAPE collaboration. The NMS-E1 lies in the disk of M31 at \\alpha = 0:43:33.3 and \\delta = +41:06:44, about 15.5 arcmin away in the South-East direction from the center of M31. The degenerate Paczy\\'{n}ski fit gives a half intensity duration of ~ 59 days. The photometric analysis of candidate shows that it reached up to R ~ 20.1 mag at the time of maximum brightness and colour of the source star estimated to be (R-I)_0 ~ 1.1 mag. It is seen that the microlensing candidate is blended by red variable stars consequently light curves do not strictly follow the characteristic Paczy\\'{n}ski shape and achromatic nature however its long period monitoring and similar behaviour in R and I bands lend support of its microle...

  15. Blazar candidates beyond redshift 4 observed by Swift

    CERN Document Server

    Sbarrato, T; Tagliaferri, G; Foschini, L; Nardini, M; Tavecchio, F; Gehrels, N

    2014-01-01

    We have selected SDSS J222032.50+002537.5 and SDSS J142048.01+120545.9 as best blazar candidates out of a complete sample of extremely radio-loud quasars at z>4, with highly massive black holes. We observed them and a third serendipitous candidate with similar features (PMN J2134-0419) in the X-rays with the Swift/XRT telescope, to confirm their blazar nature. We observed strong and hard X-ray fluxes in all three cases. This allowed us to classify our candidates as real blazars, being characterized by large Lorentz factors (~13) and very small viewing angles (~3deg). All three sources have black hole masses exceeding 10^9Msun and their classification provides intriguing constraints on supermassive black hole formation and evolution models. We confirm our earlier suggestion that there are different formation epochs of extremely massive black holes hosted in jetted (z~4) and non-jetted systems (z~2.5).

  16. Five Kepler target stars that show multiple transiting exoplanet candidates

    Energy Technology Data Exchange (ETDEWEB)

    Steffen, Jason H.; /Fermilab; Batalha, Natalie M.; /San Jose State U.; Borucki, William J.; /NASA, Ames; Buchhave, Lars A.; /Harvard-Smithsonian Ctr. Astrophys. /Bohr Inst.; Caldwell, Douglas A.; /NASA, Ames /SETI Inst., Mtn. View; Cochran, William D.; /Texas U.; Endl, Michael; /Texas U.; Fabrycky, Daniel C.; /Harvard-Smithsonian Ctr. Astrophys.; Fressin, Francois; /Harvard-Smithsonian Ctr. Astrophys.; Ford, Eric B.; /Florida U.; Fortney, Jonathan J.; /UC, Santa Cruz, Phys. Dept. /NASA, Ames

    2010-06-01

    We present and discuss five candidate exoplanetary systems identified with the Kepler spacecraft. These five systems show transits from multiple exoplanet candidates. Should these objects prove to be planetary in nature, then these five systems open new opportunities for the field of exoplanets and provide new insights into the formation and dynamical evolution of planetary systems. We discuss the methods used to identify multiple transiting objects from the Kepler photometry as well as the false-positive rejection methods that have been applied to these data. One system shows transits from three distinct objects while the remaining four systems show transits from two objects. Three systems have planet candidates that are near mean motion commensurabilities - two near 2:1 and one just outside 5:2. We discuss the implications that multitransiting systems have on the distribution of orbital inclinations in planetary systems, and hence their dynamical histories; as well as their likely masses and chemical compositions. A Monte Carlo study indicates that, with additional data, most of these systems should exhibit detectable transit timing variations (TTV) due to gravitational interactions - though none are apparent in these data. We also discuss new challenges that arise in TTV analyses due to the presence of more than two planets in a system.

  17. TIME SERIES FORECASTING WITH MULTIPLE CANDIDATE MODELS: SELECTING OR COMBINING?

    Institute of Scientific and Technical Information of China (English)

    YU Lean; WANG Shouyang; K. K. Lai; Y.Nakamori

    2005-01-01

    Various mathematical models have been commonly used in time series analysis and forecasting. In these processes, academic researchers and business practitioners often come up against two important problems. One is whether to select an appropriate modeling approach for prediction purposes or to combine these different individual approaches into a single forecast for the different/dissimilar modeling approaches. Another is whether to select the best candidate model for forecasting or to mix the various candidate models with different parameters into a new forecast for the same/similar modeling approaches. In this study, we propose a set of computational procedures to solve the above two issues via two judgmental criteria. Meanwhile, in view of the problems presented in the literature, a novel modeling technique is also proposed to overcome the drawbacks of existing combined forecasting methods. To verify the efficiency and reliability of the proposed procedure and modeling technique, the simulations and real data examples are conducted in this study.The results obtained reveal that the proposed procedure and modeling technique can be used as a feasible solution for time series forecasting with multiple candidate models.

  18. The Coolest Isolated Brown Dwarf Candidate Member of TWA

    CERN Document Server

    Gagné, Jonathan; Cruz, Kelle; Lafrenière, David; Doyon, René; Malo, Lison; Artigau, Étienne

    2014-01-01

    We present two new late-type brown dwarf candidate members of the TW Hydrae association (TWA) : 2MASS J12074836-3900043 and 2MASS J12474428-3816464, which were found as part of the BANYAN all-sky survey (BASS) for brown dwarf members to nearby young associations. We obtained near-infrared (NIR) spectroscopy for both objects (NIR spectral types are respectively L1 and M9), as well as optical spectroscopy for J1207-3900 (optical spectral type is L0{\\gamma}), and show that both display clear signs of low-gravity, and thus youth. We use the BANYAN II Bayesian inference tool to show that both objects are candidate members to TWA with a very low probability of being field contaminants, although the kinematics of J1247-3816 seem slightly at odds with that of other TWA members. J1207-3900 is currently the latest-type and the only isolated L-type candidate member of TWA. Measuring the distance and radial velocity of both objects is still required to claim them as bona fide members. Such late-type objects are predicted...

  19. NHI economic analysis of candidate nuclear hydrogen processes

    International Nuclear Information System (INIS)

    The DOE Nuclear Hydrogen Initiative (NHI) is investigating candidate technologies for large scale hydrogen production using high temperature gas-cooled reactors (HTGR) in concert with the Next Generation Nuclear Plant (NGNP) programme. The candidate processes include high temperature thermochemical and high temperature electrolytic processes which are being investigated in a sequence of experimental and analytic studies to establish the most promising and cost effective means of hydrogen production with nuclear energy. Although these advanced processes are in an early development stage, it is important that the projected economic potential of these processes be evaluated to assist in the prioritisation of research activities, and ultimately in the selection of the most promising processes for demonstration and deployment. The projected cost of hydrogen produced is the most comprehensive metric in comparing candidate processes. Since these advanced processes are in the early stages of development and much of the technology is still unproven, the estimated production costs are also significantly uncertain. The programme approach has been to estimate the cost of hydrogen production from each process periodically, based on the best available data at that time, with the intent of increasing fidelity and reducing uncertainty as the research programme and system definition studies progress. These updated cost estimates establish comparative costs at that stage of development but are also used as inputs to the evaluation of research priorities, and identify the key cost and risk (uncertainty) drivers for each process. The economic methodology used to assess the candidate processes are based on the H2A ground rules and modelling tool (discounted cash flow) developed by the DOE Office of Energy Efficiency and Renewable Energy (EERE). The figure of merit output from the calculation is the necessary selling price for hydrogen in dollars per kilogram that satisfies the cost

  20. Transiting planet candidates with ASTEP 400 at Dome C, Antarctica

    Science.gov (United States)

    Mékarnia, D.; Guillot, T.; Rivet, J.-P.; Schmider, F.-X.; Abe, L.; Gonçalves, I.; Agabi, A.; Crouzet, N.; Fruth, T.; Barbieri, M.; Bayliss, D. D. R.; Zhou, G.; Aristidi, E.; Szulagyi, J.; Daban, J.-B.; Fanteï-Caujolle, Y.; Gouvret, C.; Erikson, A.; Rauer, H.; Bouchy, F.; Gerakis, J.; Bouchez, G.

    2016-08-01

    ASTEP 400, the main instrument of the ASTEP (Antarctica Search for Transiting ExoPlanets) programme, is a 40-cm telescope, designed to withstand the harsh conditions in Antarctica, achieving a photometric accuracy of a fraction of milli-magnitude on hourly timescales for planet-hosting southern bright (R˜12 mag) stars. We review the performances of this instrument, describe its operating conditions, and present results from the analysis of observations obtained during its first three years (2010-2012) of operation, before its repatriation in 2014. During this time, we observed a total of 22 stellar fields (1° × 1° FoV). Each field, in which we measured stars up to magnitude R=18 mag, was observed continuously during ˜7 to ˜30 days. More than 200 000 frames were recorded and 310 000 stars processed, using an implementation of the optimal image subtraction (OIS) photometry algorithm. We found 43 planetary transit candidates. Twenty of these candidates were observed using spectroscopic follow-ups including four targets classified as good planet candidates. Our results demonstrate that accurate near-continuous photometric observations are achievable from the Concordia station at Dome C in Antarctica, even if we were not able to reach the nominal photometric precision of the instrument. We conducted a correlation analysis between the RMS noise and a large number of external parameters and found that source of the ˜1 mmag correlated noise is not obvious and does not depend on a single parameter. However, our analysis provided some hints and guidance to increase the photometric accuracy of the instrument. These improvements should equip any future telescope operating in Antarctica.

  1. Thermodynamic analysis of a kagome spin liquid candidate

    Science.gov (United States)

    Han, Tianheng; Bonnoit, Craig; Chisnell, Robin; Helton, Joel; Takano, Yasu; Lee, Young

    2013-03-01

    Herbertsmithite ZnCu3(OH)6Cl2-one of the most promising quantum spin liquid candidates-presents a promising system for studies of frustrated magnetism on an S =1/2 kagomé lattice. Following our recent success in crystal growth, specific heat has been measured at dilution fridge temperatures up to 18 T on a single crystal sample which gives further information on the low temperature phase. Additional analysis of the thermodynamic measurements on single crystal samples lends further hints on the intrinsic spin liquid physics.

  2. Tetravalent DNA vaccine product as a vaccine candidate against dengue.

    Science.gov (United States)

    Porter, Kevin R; Teneza-Mora, Nimfa; Raviprakash, Kanakatte

    2014-01-01

    Dengue is the most important arbovirus worldwide and is the virus that causes dengue fever and the more severe dengue hemorrhagic fever. There are four serotypes of dengue with each possessing the ability to cause disease. Developing a preventive vaccine is the most efficient and effective way to prevent these diseases, and because immunity to one serotype does not protect against the other serotypes, a vaccine must provide tetravalent protection. We used DNA immunization as a platform to develop a tetravalent vaccine. In this chapter, we describe the laboratory, regulatory, and clinical methodology for evaluating a candidate tetravalent vaccine in a Phase 1 clinical trial. PMID:24715294

  3. ASSESSING THE FUTURE MIGRATION POTENTIAL OF THE EU CANDIDATE COUNTRIES

    OpenAIRE

    Assoc. Prof. Ph.D Vesna Bucevska

    2010-01-01

    In the realm of the EU accession, the EU candidate countries and EU are facing a number of challenges raised by the potential migration from these countries to EU. In this paper we try to answer the question if the fear of large migration pressure from these countries to EU is justified by estimating the migration potential of Croatia, Macedonia and Turkey to Germany, as the most dominant EU receiving country of immigrants in the period 1997-2007. The results from the extended gravity model r...

  4. Candidates of M7-Class Earthquake Beneath Greater Tokyo Area

    Science.gov (United States)

    Okada, Y.

    2003-12-01

    In greater Tokyo area, the occurrence of M7-class earthquake is thought to be imminent by the following reasons. (1) In these 20 years, maximum size of shallow microearthquakes beneath Tokyo is steadily increasing. (2) In recent 80 years after Kanto earthquake, maximum size of the earthquakes in Kanto region is gradually increasing. (3) In these 400 years, it was observed twice that two M7-class earthquakes precede the M8 interplate earthquakes in the latter half of the interseismic period. Taking into consideration these background, the Central Disaster Management Council, Japan issued _gGuideline for Countermeasures to the Earthquakes Beneath Southern Kanto Region _h on August 1994, and proposed 19 fault models along the upper boundary of Philippine Sea plate as the candidates of the forthcoming M7-class earthquake. At present, we have no data of abnormal seismic activity or crustal movement to select preferable one among these 19 fault models. Here, we will try to constrain the candidates which may have relatively higher possibility of the occurrence by a elimination method. It seems to be possible to exclude some of the fault models by the following ways. (1) Adopting characteristic earthquake concept, we can exclude 5 models which overlap to the focal region of 1923 Kanto earthquake. (2) A belt like zone of serpentine are found from tomography results at 30-40km depth along the Philippine Sea plate beneath the Kanto Plain and no microearthquake activities are generated along this zone (Kamiya and Kobayashi, GRL, 2000). We can eliminate 4 models which lie in this zone. (3) Beneath the eastern Boso Peninsula, it was found that slow slips of M6.5-class are repeated every 5-6 years. We can exclude 2 models in the area (4) Since plate collision is undertaken beneath eastern Yamanashi Prefecture, we can exclude 1 model in this area. Finally, it remains 7 fault models as the possible candidates of M7-class earthquake beneath Tokyo area. They are 3 models just beneath

  5. The Intrinsic Magnetic Fields of the Galactic Black Hole Candidates

    OpenAIRE

    Robertson, Stanley L.

    1998-01-01

    Recent work has linked the quiescent luminosities and hard/soft spectral state switches of neutron stars (NSs) to their spinning magnetic fields. It is shown here that the quiescent luminosities and spectral switches of galactic black hole candidates (BHCs) could be produced in the same way for spin rates below 100 Hz and magnetic fields above 10^10 G. It is also shown that the ultrasoft peaks and large flickering amplitudes of the BHCs would be expected from the surfaces of massive NSs. None...

  6. Environmental Systems Research Candidates FY-01 Annual Report

    Energy Technology Data Exchange (ETDEWEB)

    Miller, David Lynn; Piet, Steven James

    2001-03-01

    The Environmental Systems Research Candidates (ESRC) Program ran from April 2000 through September 2001 as part of the Environmental Systems Research and Analysis (ESRA) Program at the Idaho National Engineering and Environmental Laboratory (INEEL). ESRA provides key science and technology to meet the cleanup mission of the U.S. Department of Energy Office of Environmental Management (EM), and performs research and development that will help solve current legacy problems and enhance the INEEL’s scientific and technical capability for solving longer-term challenges. This report documents the accomplishments of the ESRC Program. The ESRC Program consisted of 25 tasks subdivided within four research areas.

  7. Assessment of potential solder candidates for high temperature applications

    DEFF Research Database (Denmark)

    package with different solders of different melting temperatures. High Pb containing alloys where the lead levels can be above 85% by weight, is one of the solders currently being used in this technology. Responding to market pressure i.e. need for green electronic products there is now an increasing...... pressure to eliminate lead containing materials despite the fact that materials for high Pb containing alloys are currently not affected by any legislations. A tentative assessment was carried out to determine the potential solder candidates for high temperature applications based on the solidification...

  8. Call for bids: last step for the Finnish nuclear candidates

    International Nuclear Information System (INIS)

    Twenty-three years after the start-up of its last nuclear power plants, Finland would order a new reactor in December 2003 to supply the power needs of the three main paper companies of Finland which control the PVO power group. Three candidates are in the competition: Framatome ANP (France-Germany), Atomstroyexport (Minatom, Russia) and General Electric (US). Helsinki has also approved in May 2001 the construction of a waste disposal site for low- and medium-level radioactive wastes in a granitic cavity at a 800 m depth. Short paper. (J.S.)

  9. Event display of a H -> 4e candidate event

    CERN Multimedia

    ATLAS, Collaboration

    2012-01-01

    Event display of a H -> 4e candidate event with m(4l) = 124.5 (124.6) GeV without (with) Z mass constraint. The masses of the lepton pairs are 70.6 GeV and 44.7 GeV. The event was recorded by ATLAS on 18-May-2012, 20:28:11 CEST in run number 203602 as event number 82614360. Zoom into the tracking detector. The tracks and clusters of the two electron pairs are colored red and blue, respectively.

  10. Event display of a H -> 4e candidate event

    CERN Multimedia

    ATLAS, Collaboration

    2012-01-01

    Event display of a H -> 4e candidate event with m(4l) = 124.5 (124.6) GeV without (with) Z mass constraint. The masses of the lepton pairs are 70.6 GeV and 44.7 GeV. The event was recorded by ATLAS on 18-May-2012, 20:28:11 CEST in run number 203602 as event number 82614360. The tracks and clusters of the two electron pairs are colored red and blue, respectively.

  11. Event display of a H -> 4mu candidate event

    CERN Multimedia

    ATLAS, Collaboration

    2012-01-01

    Event display of a H -> 4mu candidate event with m(4l) = 124.1 (125.1) GeV without (with) Z mass constraint. The masses of the lepton pairs are 86.3 GeV and 31.6 GeV. The event was recorded by ATLAS on 10-Jun-2012, 13:24:31 CEST in run number 204769 as event number 71902630. Muon tracks are colored red. The inset on the right-hand side shows a zoom into the tracking detector. The inset on top shows a zoom into the vertex region, indicating that the 4 muons originate from the same primary vertex.

  12. Event display of a H -> 4e candidate event

    CERN Multimedia

    ATLAS, Collaboration

    2012-01-01

    Event display of a H -> 4e candidate event with m(4l) = 124.5 (124.6) GeV without (with) Z mass constraint. The masses of the lepton pairs are 70.6 GeV and 44.7 GeV. The event was recorded by ATLAS on 18-May-2012, 20:28:11 CEST in run number 203602 as event number 82614360. Zoom into the tracking detector and the LAr calorimeter where its detailed structure is highlighted. The tracks and clusters of the two electron pairs are colored red and blue, respectively.

  13. Event display of a H -> 4e candidate event

    CERN Multimedia

    ATLAS, Collaboration

    2012-01-01

    Event display of a H -> 4e candidate event with m(4l) = 124.5 (124.6) GeV without (with) Z mass constraint. The masses of the lepton pairs are 70.6 GeV and 44.7 GeV. The event was recorded by ATLAS on 18-May-2012, 20:28:11 CEST in run number 203602 as event number 82614360. The tracks of the two electron pairs are colored red, the clusters in the LAr calorimeter are colored darkgreen.

  14. Homogeneity study of candidate reference material in fish matrix

    International Nuclear Information System (INIS)

    A material is perfectly homogeneous with respect to a given characteristic, or composition, if there is no difference between the values obtained from one part to another. Homogeneity is usually evaluated using analysis of variance (ANOVA). However, the requirement that populations of data to be processed must have a normal distribution and equal variances greatly limits the use of this statistical tool. A more suitable test for assessing the homogeneity of RMs, known as sufficient homogeneity, was proposed by Fearn and Thompson. In this work, we evaluate the performance of the two statistical treatments for assessing homogeneity of methylmercury (MeHg) in candidate reference material of fish tissue

  15. Experience with CANDID: Comparison algorithm for navigating digital image databases

    Energy Technology Data Exchange (ETDEWEB)

    Kelly, P.; Cannon, M.

    1994-10-01

    This paper presents results from the authors experience with CANDID (Comparison Algorithm for Navigating Digital Image Databases), which was designed to facilitate image retrieval by content using a query-by-example methodology. A global signature describing the texture, shape, or color content is first computed for every image stored in a database, and a normalized similarity measure between probability density functions of feature vectors is used to match signatures. This method can be used to retrieve images from a database that are similar to a user-provided example image. Results for three test applications are included.

  16. OPERA: A first tau-neutrino appearance candidate

    International Nuclear Information System (INIS)

    OPERA is a long-baseline neutrino experiment dedicated to the study of muon-neutrino to tau-neutrino oscillation. Using the high-energy CERN neutrinos to Gran Sasso beam (CNGS), it is the first experiment directly searching for tau-neutrino appearance from oscillation of muon-neutrinos. Since 2008 runs with CNGS neutrinos have been successfully accomplished. After a brief introduction on the OPERA hybrid detector and the main parameters of the experiment, recent results are presented. A first candidate for a tau-neutrino charged-current event is described in detail. The background and the corresponding significance of the event is evaluated.

  17. Higgsphobic and fermiophobic Z’ as a single dark matter candidate

    OpenAIRE

    Nan Chen; Ying Zhang; Qing Wang; Giacomo Cacciapaglia; Aldo Deandrea; Luca Panizzi(School of Physics and Astronomy, University of Southampton, Highfield, Southampton SO17 1BJ, U.K.)

    2014-01-01

    A spin-1 Z’ particle as a single dark matter candidate is investigated by assuming that it does not directly couple to the Higgs boson and standard model fermions and does not mix with the photon and Z boson. The remaining dominant vertices are quartic Z ′ Z ′ ZZ and Z ′ Z ′ W + W − , which can induce effective $ {Z^{\\prime }}{Z^{\\prime }}q\\overline{q} $ couplings through standard-model gauge-boson loops. We discuss constraints from the cosmological thermal relic density, and direct and indir...

  18. Recruiting qualified home care aides: new candidate pools.

    Science.gov (United States)

    Wilner, M A

    1999-04-01

    With the demographic surge of baby boomers and the number of women aged 25-45 projected to decline, the coming decades will see a shortage of workers to care for the elderly. Home care aide agencies will only be able to retain their competitive edge if they widen the pool of candidates from which they recruit and create an attractive and decent job. Creating a decent job with adequate pay, benefits, and support is a business strategy that will attract a wider range of workers, including those with minimal experience, and have positive ramifications for health care in the future--and now. PMID:10537510

  19. 2012 NCME Election of Board of Directors Candidate Biographies (in Alphabetical Order According to Position)

    Science.gov (United States)

    Educational Measurement: Issues and Practice, 2012

    2012-01-01

    This article profiles the candidates for the 2012 NCME election of board of directors. This includes the candidates for the office of the vice president and positions representing testing organizations and members at-large.

  20. Oxygen-Diffused Titanium as a Candidate Brake Rotor Material

    Energy Technology Data Exchange (ETDEWEB)

    Qu, Jun [ORNL; Blau, Peter Julian [ORNL; Jolly, Brian C [ORNL

    2009-01-01

    Titanium alloys are one of several candidate materials for the next generation of truck disk brake rotors. Despite their advantages of lightweight relative to cast iron and good strength and corrosion resistance, titanium alloys are unlikely to be satisfactory brake rotor materials unless their friction and wear behavior can be significantly improved. In this study, a surface engineering process oxygen diffusion was applied to titanium rotors and has shown very encouraging results. The oxygen diffused Ti-6Al-4V (OD-Ti) was tested on a sub-scale brake tester against a flat block of commercial brake lining material and benchmarked against several other Ti-based materials, including untreated Ti-6Al-4V, ceramic particle-reinforced Ti composites (MMCs), and a thermal-spray-coated Ti alloy. With respect to friction, the OD-Ti outperformed all other candidate materials under the imposed test conditions with the friction coefficient remaining within a desirable range of 0.35-0.50, even under the harshest conditions when the disk surface temperature reached nearly 600 C. In addition, the OD-Ti showed significantly improved wear-resistance over the non-treated one and was even better than the Ti-based composite materials.

  1. Astrophysical dark matter: candidates from particle physics and detection possibilities

    International Nuclear Information System (INIS)

    In this talk, I will discuss the arguments that 50% to 90% of the matter in galaxies, including our own, is made of an unknown type of dark matter. I will review the reason why cosmologists believe Ω = 1 and illustrate the contrast with the limits on the amount of baryonic matter from element abundances in Big Bang Nucleosynthesis. Other arguments for nonbaryonic dark matter will also be discussed. Candidates for the dark matter from particle physics will be presented. I will focus on cold dark matter candidates known as WIMPs, weakly interacting massive (O(GeV)) particles. I will try to illustrate why these particles are interesting for astrophysics and outline ideas for cornering them. Detection possibilities for these particles include indirect detection, which takes advantage of the annihilation products of these particles in the galactic halo, the sun, or the earth. Direct detection via newly proposed cryogenic detectors must be sensitive to <∼ keV energy deposits. Annual modulation of the dark matter signal can be used as a signature for these halo particles. I hope to motivate the interest in these particles and discuss ideas for finding them

  2. Recoiling Black Holes: Electromagnetic Signatures, Candidates, and Astrophysical Implications

    Directory of Open Access Journals (Sweden)

    S. Komossa

    2012-01-01

    Full Text Available Supermassive black holes (SMBHs may not always reside right at the centers of their host galaxies. This is a prediction of numerical relativity simulations, which imply that the newly formed single SMBH, after binary coalescence in a galaxy merger, can receive kick velocities up to several 1000 km/s due to anisotropic emission of gravitational waves. Long-lived oscillations of the SMBHs in galaxy cores, and in rare cases even SMBH ejections from their host galaxies, are the consequence. Observationally, accreting recoiling SMBHs would appear as quasars spatially and/or kinematically offset from their host galaxies. The presence of the “kicks” has a wide range of astrophysical implications which only now are beginning to be explored, including consequences for black hole and galaxy assembly at the epoch of structure formation, black hole feeding, and unified models of active galactic nuclei (AGN. Here, we review the observational signatures of recoiling SMBHs and the properties of the first candidates which have emerged, including follow-up studies of the candidate recoiling SMBH of SDSSJ092712.65+294344.0.

  3. Photo multiplier tubes candidates for the Cherenkov telescope array project

    International Nuclear Information System (INIS)

    Photo Multiplier Tubes (PMTs) are the most wide spread detectors for fast low-level light signals. They are commonly used as standard light sensors for camera systems in imaging atmospheric Cherenkov telescopes. Years ago, an improvement program for the PMT candidates for the Cherenkov Telescope Array (CTA) project was initialized with the companies Hamamatsu Photonics K.K. (Japan) and Electron Tubes Enterprises Ltd. (England). CTA is the next generation of imaging atmospheric Cherenkov telescopes for high energy gamma ray astrophysics. Therefore, we need PMTs with outstanding good parameters concerning quantum efficiency, pulse width, after-pulsing and transit time spread. The currently available ''super-bialkali'' PMTs show a peak Quantum Efficiency of 40% and have an enhanced collection efficiency of up to 95-98% for wavelengths≥400 nm. The pulse width averages around 3ns at a gain of 40000. Also, the after-pulsing for a set threshold level of ≥4 photo electrons is reduced down to 0,02%. We report on the measurement results of PMT R-12292-100 from Hamamatsu as the final version and the intermediate version PMT D569/3SA from Electron Tubes Enterprises as candidate PMTs for the CTA project.

  4. A Candidate Dual AGN at z=1.175

    CERN Document Server

    Barrows, R Scott; Madsen, Kristin; Harrison, Fiona; Assef, Roberto J; Comerford, Julia M; Cushing, Michael C; Fassnacht, Christopher D; Gonzalez, Anthony; Griffith, Roger; Hickox, Ryan; Kirkpatrick, J Davy; Lagattuta, David J

    2011-01-01

    The X-ray source CXOXBJ142607.6+353351 (CXOJ1426+35), which was identified in a 172 ks Chandra image in the Bootes field, shows double-peaked rest-frame optical/UV emission lines, separated by 0.69" (5.5 kpc) in the spatial dimension and by 690 km s^-1 in the velocity dimension. The high excitation lines and emission line ratios indicate both systems are ionized by an AGN continuum, and the double-peaked profile resembles that of candidate dual AGN. At a redshift of z=1.175, this source is the highest redshift candidate dual AGN yet identified. However, many sources have similar emission line profiles for which other interpretations are favored. We have analyzed the substantial archival data available in this field, as well as acquired near-infrared (NIR) adaptive optics (AO) imaging and NIR slit spectroscopy. The X-ray spectrum is hard, implying a column density of several 10^23 cm^-2. Though heavily obscured, the source is also one of the brightest in the field, with an absorption-corrected 2-10 keV luminos...

  5. A Catalog of Candidate High-redshift Blazars for GLAST

    Energy Technology Data Exchange (ETDEWEB)

    Arias, Tersi M.; /SLAC /San Francisco State U.

    2006-09-27

    High-redshift blazars are promising candidates for detection by the Gamma-ray Large Area Space Telescope (GLAST). GLAST, expected to be launched in the Fall of 2007, is a high-energy gamma-ray observatory designed for making observations of celestial gamma-ray sources in the energy band extending from 10 MeV to more than 200 GeV. It is estimated that GLAST will find several thousand blazars. The motivations for measuring the gamma-ray emission from distant blazars include the study of the high-energy emission processes occurring in these sources and an indirect measurement of the extragalactic background light. In anticipation of the launch of GLAST we have compiled a catalog of candidate high-redshift blazars. The criteria for sources chosen for the catalog were: high radio emission, high redshift, and a flat radio spectrum. A preliminary list of 307 radio sources brighter than 70mJy with a redshift z {ge} 2.5 was acquired using data from the NASA Extragalactic Database. Flux measurements of each source were obtained at two or more radio frequencies from surveys and catalogs to calculate their radio spectral indices {alpha}. The sources with a flat-radio spectrum ({alpha} {le} 0.5) were selected for the catalog, and the final catalog includes about 200 sources.

  6. Gaia FGK Benchmark Stars: New Candidates At Low-Metallicities

    CERN Document Server

    Hawkins, Keith; Heiter, Ulrike; Soubiran, Caroline; Blanco-Cuaresma, Sergi; Casagrande, Luca; Gilmore, Gerry; Lind, Karin; Magrini, Laura; Masseron, Thomas; Pancino, Elena; Randich, Sofia; Worley, Clare C

    2016-01-01

    We have entered an era of large spectroscopic surveys in which we can measure, through automated pipelines, the atmospheric parameters and chemical abundances for large numbers of stars. Calibrating these survey pipelines using a set of "benchmark stars" in order to evaluate the accuracy and precision of the provided parameters and abundances is of utmost importance. The recent proposed set of Gaia FGK benchmark stars of Heiter et al. (2015) has no recommended stars within the critical metallicity range of $-2.0 <$ [Fe/H] $< -1.0$ dex. In this paper, we aim to add candidate Gaia benchmark stars inside of this metal-poor gap. We began with a sample of 21 metal-poor stars which was reduced to 10 stars by requiring accurate photometry and parallaxes, and high-resolution archival spectra. The procedure used to determine the stellar parameters was similar to Heiter et al. (2015) and Jofre et al. (2014) for consistency. The effective temperature (T$_{\\mathrm{eff}}$) of all candidate stars was determined using...

  7. Fermi GBM Counterparts to LIGO Gravitational-Wave Candidates

    Science.gov (United States)

    Burns, Eric; Blackburn, Lindy; Briggs, Michael Stephen; Camp, Jordan; Christensen, Nelson; Connaughton, Valerie; Goldstein, Adam; Littenberg, Tyson; Racusin, Judith L.; Shawhan, Peter S.; Pound Singer, Leo; Veitch, John; Zhang, Binbin

    2016-04-01

    As the advanced configuration of the Laser Interferometer Gravitational-wave Observatory has begun operations, we eagerly anticipate the detection of gravitational waves (GW) with LIGO in coincidence with a gamma-ray signal from the Fermi Gamma-ray Burst Monitor (GBM). The most likely source is a short Gamma-Ray Burst (GRB) arising from the merger of two compact objects. With its broad sky coverage, GBM triggers and localizes more short GRBs than other active space missions, ~40 each year. Combining GBM and LIGO localization uncertainty regions may provide a smaller target to look for the GW host. A joint GBM-LIGO detection increases the confidence in the GW detection and helps characterize the parameters of the merger. Offline searches for weak GRBs that fail to trigger onboard Fermi indicate that additional short GRBs can be detected in the GBM data. I will discuss the implementation and expected benefits of joint searches to detect and localize GW candidates. I will also explore how the non-detection in the GBM data of a signal consistent with GW candidates in the LIGO data can affect follow-up strategies for counterpart searches by other observers.

  8. Spectral analysis of Kepler SPB and Beta Cep candidate stars

    CERN Document Server

    Lehmann, H; Semaan, T; Gutiérrez, J; Smalley, B; Briquet, M; Shulyak, D; Tsymbal, V; de Cat, P

    2010-01-01

    We determine the fundamental parameters of SPB and Beta Cep candidate stars observed by the Kepler satellite mission and estimate the expected types of non-radial pulsators by comparing newly obtained high-resolution spectra with synthetic spectra computed on a grid of stellar parameters assuming LTE and check for NLTE effects for the hottest stars. For comparison, we determine Teff independently from fitting the spectral energy distribution of the stars obtained from the available photometry. We determine Teff, log(g), micro-turbulent velocity, vsin(i), metallicity, and elemental abundance for 14 of the 16 candidate stars, two of the stars are spectroscopic binaries. No significant influence of NLTE effects on the results could be found. For hot stars, we find systematic deviations of the determined effective temperatures from those given in the Kepler Input Catalogue. The deviations are confirmed by the results obtained from ground-based photometry. Five stars show reduced metallicity, two stars are He-stro...

  9. ADAM33, a new candidate for psoriasis susceptibility.

    Directory of Open Access Journals (Sweden)

    Fabienne Lesueur

    Full Text Available Psoriasis is a chronic skin disorder with multifactorial etiology. In a recent study, we reported results of a genome-wide scan on 46 French extended families presenting with plaque psoriasis. In addition to unambiguous linkage to the major susceptibility locus PSORS1 on Chromosome 6p21, we provided evidence for a susceptibility locus on Chromosome 20p13. To follow up this novel psoriasis susceptibility locus we used a family-based association test (FBAT for an association scan over the 17 Mb candidate region. A total of 85 uncorrelated SNP markers located in 65 genes of the region were initially investigated in the same set of large families used for the genome wide search, which consisted of 295 nuclear families. When positive association was obtained for a SNP, candidate genes nearby were explored more in detail using a denser set of SNPs. Thus, the gene ADAM33 was found to be significantly associated with psoriasis in this family set (The best association was on a 3-SNP haplotype P = 0.00004, based on 1,000,000 permutations. This association was independent of PSORS1. ADAM33 has been previously associated with asthma, which demonstrates that immune system diseases may be controlled by common susceptibility genes with general effects on dermal inflammation and immunity. The identification of ADAM33 as a psoriasis susceptibility gene identified by positional cloning in an outbred population should provide insights into the pathogenesis and natural history of this common disease.

  10. Reliability of MRI findings in candidates for lumbar disc prosthesis

    International Nuclear Information System (INIS)

    Limited reliability data exist for localised magnetic resonance imaging (MRI) findings relevant to planning of treatment with lumbar disc prosthesis and later outcomes. We assessed the reliability of such findings in chronic low back pain patients who were accepted candidates for disc prosthesis. On pretreatment MRI of 170 patients (mean age 41 years; 88 women), three experienced radiologists independently rated Modic changes, disc findings and facet arthropathy at L3/L4, L4/L5 and L5/S1. Two radiologists rerated 126 examinations. For each MRI finding at each disc level, agreement was analysed using the kappa statistic and differences in prevalence across observers using a fixed effects model. All findings at L3/L4 and facet arthropathy at L5/S1 had a mean prevalence <10% across observers and were not further analysed, ensuring interpretable kappa values. Overall interobserver agreement was generally moderate or good (kappa 0.40-0.77) at L4-S1 for Modic changes, nucleus pulposus signal, disc height (subjective and measured), posterior high-intensity zone (HIZ) and disc contour, and fair (kappa 0.24) at L4/L5 for facet arthropathy. Posterior HIZ at L5/S1 and severely reduced subjective disc height at L4/L5 differed up to threefold in prevalence between observers (p < 0.0001). Intraobserver agreement was mostly good or very good (kappa 0.60-1.00). In candidates for disc prosthesis, mostly moderate interobserver agreement is expected for localised MRI findings. (orig.)

  11. Extremely metal-poor star candidates in the SDSS

    Science.gov (United States)

    Xu, Si-Yao; Zhang, Hua-Wei; Liu, Xiao-Wei

    2013-03-01

    For a sample of metal-poor stars (-3.3 Digital Sky Survey (SDSS), calculated effective temperatures from (g - z)0 color, deduced stellar surface gravities by fitting stellar isochrones, and determined metallicities based on the aforementioned quantities. Metallicities thus derived from the Ca II K line are in much better agreement with the results determined from high-resolution spectra than the values given in the SDSS Data Release 7. The metallicities derived from the Mg I b lines have a large dispersion owing to the large measurement errors, whereas those deduced from the Ca II triplet lines are too high due to both non-local thermodynamical equilibrium (NLTE) effects and measurement errors. Abundances after correction for the NLTE effect for the Mg I b lines and Ca II triplet lines are also presented. Following this method, we have identified six candidates of ultra-metal-poor stars with [Fe/H] ~ -4.0 from a sample of 166 metal-poor star candidates. One of them, SDSS J102915+172927, was recently confirmed to be an ultra-metal-poor ([Fe/H] 4.0) star with the lowest metallicity ever measured. Follow-up high-resolution spectroscopy for the other five ultra-metal-poor stars in our sample will therefore be of great interest.

  12. Sleeping Beauty Mouse Models Identify Candidate Genes Involved in Gliomagenesis

    Science.gov (United States)

    Vyazunova, Irina; Maklakova, Vilena I.; Berman, Samuel; De, Ishani; Steffen, Megan D.; Hong, Won; Lincoln, Hayley; Morrissy, A. Sorana; Taylor, Michael D.; Akagi, Keiko; Brennan, Cameron W.; Rodriguez, Fausto J.; Collier, Lara S.

    2014-01-01

    Genomic studies of human high-grade gliomas have discovered known and candidate tumor drivers. Studies in both cell culture and mouse models have complemented these approaches and have identified additional genes and processes important for gliomagenesis. Previously, we found that mobilization of Sleeping Beauty transposons in mice ubiquitously throughout the body from the Rosa26 locus led to gliomagenesis with low penetrance. Here we report the characterization of mice in which transposons are mobilized in the Glial Fibrillary Acidic Protein (GFAP) compartment. Glioma formation in these mice did not occur on an otherwise wild-type genetic background, but rare gliomas were observed when mobilization occurred in a p19Arf heterozygous background. Through cloning insertions from additional gliomas generated by transposon mobilization in the Rosa26 compartment, several candidate glioma genes were identified. Comparisons to genetic, epigenetic and mRNA expression data from human gliomas implicates several of these genes as tumor suppressor genes and oncogenes in human glioblastoma. PMID:25423036

  13. Properties of optically selected BL Lac candidates from the SDSS

    CERN Document Server

    Kügler, S D; Heidt, J; Esser, J; Schultz, T

    2014-01-01

    \\textbf{Context.} Deep optical surveys open the avenue for find large numbers of BL Lac objects that are hard to identify because they lack the unique properties classifying them as such. While radio or X-ray surveys typically reveal dozens of sources, recent compilations based on optical criteria alone have increased the number of BL Lac candidates considerably. However, these compilations are subject to biases and may contain a substantial number of contaminating sources. \\textbf{Aims.} In this paper we extend our analysis of 182 optically selected BL Lac object candidates from the SDSS with respect to an earlier study. The main goal is to determine the number of bona fide BL Lac objects in this sample. \\textbf{Methods.} We examine their variability characteristics, determine their broad-band radio-UV SEDs, and search for the presence of a host galaxy. In addition we present new optical spectra for 27 targets with improved S/N with respect to the SDSS spectra. \\textbf{Results.} At least 59% of our targets h...

  14. Self-gravitating disc candidates around massive young stars

    CERN Document Server

    Forgan, D H; Cyganowski, C J; Brogan, C L; Hunter, T R

    2016-01-01

    There have been several recent detections of candidate Keplerian discs around massive young protostars. Given the relatively large disc-to-star mass ratios in these systems, and their young ages, it is worth investigating their propensity to becoming self-gravitating. To this end, we compute self-consistent, semi-analytic models of putative self-gravitating discs for five candidate disc systems. Our aim is not to fit exactly the observations, but to demonstrate that the expected dust continuum emission from marginally unstable self-gravitating discs can be quite weak, due to high optical depth at the midplane even at millimetre wavelengths. In the best cases, the models produce "observable" disc masses within a factor of <1.5 of those observed, with midplane dust temperatures comparable to measured temperatures from molecular line emission. We find in two cases that a self-gravitating disc model compares well with observations. If these discs are self-gravitating, they satisfy the conditions for disc fragm...

  15. Transmission blocking malaria vaccines: Assays and candidates in clinical development.

    Science.gov (United States)

    Sauerwein, R W; Bousema, T

    2015-12-22

    Stimulated by recent advances in malaria control and increased funding, the elimination of malaria is now considered to be an attainable goal for an increasing number of malaria-endemic regions. This has boosted the interest in transmission-reducing interventions including vaccines that target sexual, sporogenic, and/or mosquito-stage antigens to interrupt malaria transmission (SSM-VIMT). SSM-VIMT aim to prevent human malaria infection in vaccinated communities by inhibiting parasite development within the mosquito after a blood meal taken from a gametocyte carrier. Only a handful of target antigens are in clinical development and progress has been slow over the years. Major stumbling blocks include (i) the expression of appropriately folded target proteins and their downstream purification, (ii) insufficient induction of sustained functional blocking antibody titers by candidate vaccines in humans, and (iii) validation of a number of (bio)-assays as correlate for blocking activity in the field. Here we discuss clinical manufacturing and testing of current SSM-VIMT candidates and the latest bio-assay development for clinical evaluation. New testing strategies are discussed that may accelerate the evaluation and application of SSM-VIMT. PMID:26409813

  16. Genetics of intracerebral hemorrhage: Insights from candidate gene approaches

    Directory of Open Access Journals (Sweden)

    Baoqiong Liu

    2012-01-01

    Full Text Available Intracerebral hemorrhage (ICH is a heterogeneous disease with genetic factors playing an important role. Association studies on a wide range of candidate pathways suggest a weak but significant effect for several alleles with ICH risk. Among the most widely investigated genes are those involved in the renin-angiotensin-aldosterone system (e.g., angiotensin-converting enzyme, coagulation pathway (e.g., Factor XIII, Factor VII, platelet-activating factor acetylhydrolase, Factor V Leiden, and beta1-tubulin, lipid metabolism (e.g., apolipoproteins (ApoE, Apo(a, ApoH, homocysteine metabolism (e.g., methylenetetrahydrofolate reductase, inflammation (e.g., interleukin-6 and tumor necrosis-alpha and other candidate pathways. To identify the robustness of the above associations with ICH, a search of Pubmed (1988 through December 2011 was performed, with searches limited to English-language studies conducted among adult human subjects. This article presents a review of the examined literature on the genetics of ICH.

  17. Four dual AGN candidates observed with the VLBA

    CERN Document Server

    Gabányi, K É; Frey, S; Komossa, S; Paragi, Z; Hong, X -Y; Shen, Z -Q

    2016-01-01

    According to hierarchical structure formation models, merging galaxies are expected to be seen in different stages of their coalescence. However, currently there are no straightforward observational methods neither to select nor to confirm a large number of dual active galactic nuclei (AGN) candidates. Most attempts involve the better understanding of double-peaked narrow emission line sources, to distinguish the objects where the emission lines originate from narrow-line kinematics or jet-driven outflows from those which might harbour dual AGN. We observed four such candidate sources with the Very Long Baseline Array (VLBA) at 1.5 GHz with $\\sim$ 10 milli-arcsecond angular resolution where spectral profiles of AGN optical emission suggested the existence of dual AGN. In SDSS J210449.13-000919.1 and SDSS J23044.82-093345.3, the radio structures are aligned with the optical emission features, thus the double-peaked emission lines might be the results of jet-driven outflows. In the third detected source SDSS J1...

  18. Material Properties of Three Candidate Elastomers for Space Seals Applications

    Science.gov (United States)

    Bastrzyk, Marta B.; Daniels, Christopher C.; Oswald, Jay J.; Dunlap, Patrick H., Jr.; Steinetz, Bruce M.

    2010-01-01

    A next-generation docking system is being developed by the National Aeronautics and Space Administration (NASA) to support Constellation Space Exploration Missions to low Earth orbit (LEO), to the Moon, and to Mars. A number of investigations were carried out to quantify the properties of candidate elastomer materials for use in the main interface seal of the Low Impact Docking System (LIDS). This seal forms the gas pressure seal between two mating spacecraft. Three candidate silicone elastomer compounds were examined: Esterline ELA-SA-401, Parker Hannifin S0383-70, and Parker Hannifin S0899-50. All three materials were characterized as low-outgassing compounds, per ASTM E595, so as to minimize the contamination of optical and solar array systems. Important seal properties such as outgas levels, durometer, tensile strength, elongation to failure, glass transition temperature, permeability, compression set, Yeoh strain energy coefficients, coefficients of friction, coefficients of thermal expansion, thermal conductivity and diffusivity were measured and are reported herein.

  19. Alkyl hydroperoxide reductase: a candidate Helicobacter pylori vaccine.

    Science.gov (United States)

    O'Riordan, Avril A; Morales, Veronica Athie; Mulligan, Linda; Faheem, Nazia; Windle, Henry J; Kelleher, Dermot P

    2012-06-01

    Helicobacter pylori (H. pylori) is the most important etiological agent of chronic active gastritis, peptic ulcer disease and gastric cancer. The aim of this study was to evaluate the efficacy of alkyl hydroperoxide reductase (AhpC) and mannosylated AhpC (mAhpC) as candidate vaccines in the C57BL/6J mouse model of H. pylori infection. Recombinant AhpC was cloned, over-expressed and purified in an unmodified form and was also engineered to incorporate N and C-terminal mannose residues when expressed in the yeast Pichia pastoris. Mice were immunized systemically and mucosally with AhpC and systemically with mAhpC prior to challenge with H. pylori. Serum IgG responses to AhpC were determined and quantitative culture was used to determine the efficacy of vaccination strategies. Systemic prophylactic immunization with AhpC/alum and mAhpC/alum conferred protection against infection in 55% and 77.3% of mice, respectively. Mucosal immunization with AhpC/cholera toxin did not protect against infection and elicited low levels of serum IgG in comparison with systemic immunization. These data support the use of AhpC as a potential vaccine candidate against H. pylori infection. PMID:22512976

  20. Reliability of MRI findings in candidates for lumbar disc prosthesis

    Energy Technology Data Exchange (ETDEWEB)

    Berg, Linda; Espeland, Ansgar [Haukeland University Hospital, Department of Radiology, Bergen (Norway); University of Bergen, Section for Radiology, Department of Surgical Sciences, Bergen (Norway); Neckelmann, Gesche [Haukeland University Hospital, Department of Radiology, Bergen (Norway); Gjertsen, Oeivind [Oslo University Hospital, Department of Neuroradiology, Oslo (Norway); Hellum, Christian [Oslo University Hospital, Department of Orthopaedics, Oslo (Norway); University of Oslo, Department of Orthopaedics, Oslo (Norway); Johnsen, Lars G. [University Hospital of Trondheim, National Centre for Diseases of the Spine, Trondheim (Norway); University Hospital of Trondheim, Orthopaedic Department, Trondheim (Norway); Eide, Geir E. [Haukeland University Hospital, Centre for Clinical Research, Bergen (Norway); University of Bergen, Department of Public Health and Primary Health Care, Bergen (Norway)

    2012-07-15

    Limited reliability data exist for localised magnetic resonance imaging (MRI) findings relevant to planning of treatment with lumbar disc prosthesis and later outcomes. We assessed the reliability of such findings in chronic low back pain patients who were accepted candidates for disc prosthesis. On pretreatment MRI of 170 patients (mean age 41 years; 88 women), three experienced radiologists independently rated Modic changes, disc findings and facet arthropathy at L3/L4, L4/L5 and L5/S1. Two radiologists rerated 126 examinations. For each MRI finding at each disc level, agreement was analysed using the kappa statistic and differences in prevalence across observers using a fixed effects model. All findings at L3/L4 and facet arthropathy at L5/S1 had a mean prevalence <10% across observers and were not further analysed, ensuring interpretable kappa values. Overall interobserver agreement was generally moderate or good (kappa 0.40-0.77) at L4-S1 for Modic changes, nucleus pulposus signal, disc height (subjective and measured), posterior high-intensity zone (HIZ) and disc contour, and fair (kappa 0.24) at L4/L5 for facet arthropathy. Posterior HIZ at L5/S1 and severely reduced subjective disc height at L4/L5 differed up to threefold in prevalence between observers (p < 0.0001). Intraobserver agreement was mostly good or very good (kappa 0.60-1.00). In candidates for disc prosthesis, mostly moderate interobserver agreement is expected for localised MRI findings. (orig.)

  1. Bright low mass eclipsing binary candidates observed by STEREO

    CERN Document Server

    Wraight, K T; White, Glenn J; Norton, A J; Bewsher, D

    2012-01-01

    Observations from the Heliospheric Imagers (HI-1) on both the STEREO spacecraft have been analysed to search for bright low mass eclipsing binaries (EBs) and potential brown dwarf transits and to determine the radii of the companions. A total of 9 EB candidates have been found, ranging in brightness from V=6.59 mag to V=11.3 mag, where the radius of the companion appears to be less than 0.4 Rsol, with a diverse range of host temperatures, from 4074 K to 6925 K. Both components of one candidate, BD-07 3648, appear to be less than 0.4 Rsol and this represents a particularly interesting system for further study. The shapes of the eclipses in some cases are not clear enough to be certain they are total and the corresponding radii found should therefore be considered as lower limits. The EBs reported in this paper have either been newly found by the present analysis, or previously reported to be eclipsing by our earlier STEREO/HI-1 results. One of the new objects has subsequently been confirmed using archival Supe...

  2. No Evidence for Association between Amelogenesis Imperfecta and Candidate Genes

    Directory of Open Access Journals (Sweden)

    M Ghandehari Motlagh

    2009-03-01

    Full Text Available "nBackground: Amelogenesis imperfecta (AI is an inherited tooth disorder. Despite the fact that up to now, several gene muta­tions in MMP20, ENAM, AMELX and KLK4 genes have been reported to be associated with AI, many other genes sug­gested to be involved. The main objective of this study was to find the mutations in three major candidate genes including MMP20, ENAM and KLK4 responsible for AI from three Iranian families with generalized hypoplastic phenotype in all teeth. "nMethods: All exon/intron boundaries of subjected genes were amplified by polymerase chain reaction and subjected to direct sequencing."nResults: One polymorphisms was identified in KLK4 exon 2, in one family a homozygous mutation was found in the third base of codon 22 for serine (TCG>TCT, but not in other families. Although these base substitutions have been occurred in the signaling domain, they do not seem to influence the activity of KLK4 protein."nConclusion: Our results might support the further evidence for genetic heterogeneity; at least, in some AI cases are not caused by a gene in these reported candidate genes.

  3. Trinocular stereo vision method based on mesh candidates

    Science.gov (United States)

    Liu, Bin; Xu, Gang; Li, Haibin

    2010-10-01

    One of the most interesting goals of machine vision is 3D structure recovery of the scenes. This recovery has many applications, such as object recognition, reverse engineering, automatic cartography, autonomous robot navigation, etc. To meet the demand of measuring the complex prototypes in reverse engineering, a trinocular stereo vision method based on mesh candidates was proposed. After calibration of the cameras, the joint field of view can be defined in the world coordinate system. Mesh grid is established along the coordinate axes, and the mesh nodes are considered as potential depth data of the object surface. By similarity measure of the correspondence pairs which are projected from a certain group of candidates, the depth data can be obtained readily. With mesh nodes optimization, the interval between the neighboring nodes in depth direction could be designed reasonably. The potential ambiguity can be eliminated efficiently in correspondence matching with the constraint of a third camera. The cameras can be treated as two independent pairs, left-right and left-centre. Due to multiple peaks of the correlation values, the binocular method may not satisfy the accuracy of the measurement. Another image pair is involved if the confidence coefficient is less than the preset threshold. The depth is determined by the highest sum of correlation of both camera pairs. The measurement system was simulated using 3DS MAX and Matlab software for reconstructing the surface of the object. The experimental result proved that the trinocular vision system has good performance in depth measurement.

  4. Candidate Materials Evaluation for Supercritical Water-Cooled Reactor

    International Nuclear Information System (INIS)

    Final technical report on the corrosion, stress corrosion cracking, and radiation response of candidate materials for the supercritical water-cooled reactor concept. The objective of the proposed research was to investigate degradation of materials in the supercritical water environment (SCW). First, representative alloys from the important classes of candidate materials were studied for their corrosion and stress-corrosion cracking (SCC) resistance in supercritical water. These included ferritic/martensitic (F/M) steels, austenitic stainless steels, and Ni-base alloys. Corrosion and SCC tests were conducted at various temperatures and exposure times, as well as in various water chemistries. Second, emerging plasma surface modification and grain boundary engineering technologies were applied to modify the near surface chemistry, microstructure, and stress-state of the alloys prior to corrosion testing. Third, the effect of irradiation on corrosion and SCC of alloys in the as-received and modified/engineered conditions were examined by irradiating samples using high-energy protons and then exposing them to SCW

  5. CANDIDATE GENE ANALYSIS IN ISRAELI SOLDIERS WITH STRESS FRACTURES

    Directory of Open Access Journals (Sweden)

    Ran Yanovich

    2012-03-01

    Full Text Available To investigate the association of polymorphisms within candidate genes which we hypothesized may contribute to stress fracture predisposition, a case-control, cross- sectional study design was employed. Genotyping 268 Single Nucleotide Polymorphisms- SNPs within 17 genes in 385 Israeli young male and female recruits (182 with and 203 without stress fractures. Twenty-five polymorphisms within 9 genes (NR3C1, ANKH, VDR, ROR2, CALCR, IL6, COL1A2, CBG, and LRP4 showed statistically significant differences (p < 0.05 in the distribution between stress fracture cases and non stress fracture controls. Seventeen genetic variants were associated with an increased stress fracture risk, and eight variants with a decreased stress fracture risk. None of the SNP associations remained significant after correcting for multiple comparisons (false discovery rate- FDR. Our findings suggest that genes may be involved in stress fracture pathogenesis. Specifically, the CALCR and the VDR genes are intriguing candidates. The putative involvement of these genes in stress fracture predisposition requires analysis of more cases and controls and sequencing the relevant genomic regions, in order to define the specific gene mutations

  6. Utilities availability report for seven candidate salt sites: Final draft

    International Nuclear Information System (INIS)

    Stearns Catalytic Corporation (SC) conducted a study of availability and accessibility of electric power and natural gas supplies for each of the seven candidate sites in salt for a nuclear waste repository. The objective of this study is to indicate the existing or potential availability of adequate electric power and natural gas supplies, together with representative routing of reasonable access corridors for utility lines, for the candidate sites at Richton and Cypress Creek Domes in Mississippi, Vacherie Dome in Louisiana, Swisher and Deaf Smith Counties in Texas, and Davis and Lavender Canyons in Utah. The report describes the major characteristics of each supply and the representative routes by which each supply could be connected to the assumed respective repository site. Included are a brief narrative, maps showing representative utilities access routes, and a summary tabulation of relevant data. The supply routes used in this study are not necessarily the recommended, preferred, or selected routes. No decision affecting the final location of the preferred route has been made, therefore the routes used in this study are not to be construed as an implied decision. The routes and supply sources used in this study are for comparative purposes only, as no final selections will be made prior to site characterization

  7. Candidíase em pacientes aidéticos

    Directory of Open Access Journals (Sweden)

    C.E.O.P. Campos

    1992-09-01

    Full Text Available Trinta e cinco aidéticos entre 19 e 55 anos admitidos e tratados de candidíase no Hospital Emílio Ribas, SP, com ELISA positivo para HIV e confirmado pelo Western Blot. Tuberculose em 9 sendo 2 com pericardite; neurotoxoplasmose em 6; neurocriptococose em 5; herpes labial em 4; pneumocistose em 3 e sarcoma de Kaposi em 2, achavam-se associadas. A concentração inibitória mínima 50% (MIC 50% para os azoles foi: ketoconazol= 2,2 µg/ml; itraconazol- 21,0 µg/ml; fluconazol = 19,0 µg/ml. O MIC 50% para ospolienos: nistatina- 50,0 µg/ml; anfotericina B= 0,12 µg/ml e para 5 fluorcitosina= 1,6 µg/ml nas 35 amostras de Candida isoladas. Testes não paramétricos de Siegel revelaram significante identificação (80% das Candida albicans na candidíase, e que a dose de AMB não modificou o número de óbitos, precoce e tardio, ocorridos nesses aidéticos. O uso prévio dos azoles e da nistatina explicaria, talvez, o elevado MIC 50% observado nas amostras de Candida isoladas.

  8. Candidate Quality, Pressure Group Endorsements, And The Nature Of Political Advertising

    OpenAIRE

    Wittman, Donald

    2005-01-01

    Candidates may vary in quality, where quality is some characteristic orthogonal to policy. This "simple modification" has for the most part defied integration into the Downsian framework. Here we add the following complicating factors. We consider the possibility that there are uninformed voters who are ignorant of the candidates' relative quality. However, a pressure group with inside information regarding the quality of the candidates may endorse one of the candidates as the high-quality ca...

  9. EVALUATION OF COMMUNICATION SKILL LEVELS OF CANDIDATE TEACHERS IN TERM OF PLAYING SPORTS OR NOT

    OpenAIRE

    AYSEGUL ŞUKRAN OZ; ILHAN EKREM LEVENT; HUSEIN KIRIMOGLU

    2012-01-01

    Purpose. The aim of the research was to evaluate levels of communication skills of the candidate teachers who studied at the Faculty of Education and School of Physical Education and Sports Teacher of Mustafa Kemal University in terms of playing sports or not. Methods. The sample of the research was made up by a total of 884 candidate teachers selected from the population [175 candidate teachers (53 female and 122 male candidate teachers) from Department of Physical Education and Sports Teach...

  10. Opinions of the physical education and sports candidate teachers about reading

    OpenAIRE

    Alev Yenal; Tacettin Hakan Yenal; Murat Ozsaker

    2012-01-01

    Abstract This research aimed at exploring reading habits, opinions and attitudes about reading of the candidate teachers who studied at School of Physical Education and Sports of Adnan Menderes University. A questionnaire form -the first part of which addressed demographic questions and the second part targeted at candidate teachers’ opinions and attitudes about reading- was administered to 102 candidate teachers who participated in the research voluntarily (female candidate teachers= 39 an...

  11. Voices of Teacher Candidates of Color on White Race Evasion: "I Worried about My Safety!"

    Science.gov (United States)

    Amos, Yukari Takimoto

    2016-01-01

    This qualitative study investigated the negative impacts minority teacher candidates receive from white teacher candidates in a required multicultural education class. The findings reveal that four teacher candidates of color had difficulty positioning themselves among the overwhelming silencing power of whiteness in the class. The white students…

  12. Examining Teacher Candidate Resistance to Diversity: What Can Teacher Educators Learn?

    Science.gov (United States)

    Rose, Dana Gregory; Potts, Ann D.

    2011-01-01

    How teachers interpret and respond to diverse students' cultural identities is critical to students' success. Therefore, teacher educators require candidates to gain experience with multicultural populations during fieldwork as a means of promoting candidates' sociocultural consciousness. What can teacher educators learn from candidate perceptions…

  13. 11 CFR 100.83 - Brokerage loans and lines of credit to candidates.

    Science.gov (United States)

    2010-01-01

    ..., credit card, home equity line of credit, or other line of credit available to the candidate, including an... making such loan makes loans derived from an advance on a candidate's brokerage account, credit card... card, home equity line of credit, or other line of credit available to the candidate, for which he...

  14. Examining Technology and Teaching Efficacy of Preservice Teacher Candidates: A Deliberate Course Design Model

    Science.gov (United States)

    Willis, Jana M.

    2015-01-01

    Training programs that improve technology self-efficacy of teacher candidates will better prepare candidates to overcome technology challenges with greater levels of confidence. The purpose of this study was to examine self-efficacy levels of preservice teacher candidates who participated in scaffolded technology training designed to establish and…

  15. Length of Selection Around Candidate Genes for Artificial Selection During Domestication and Crop Improvement in Maize

    Science.gov (United States)

    Genomic screens for artificial selection have been successful in identifying candidate genes for agronomic traits in maize (Zea mays L). However, the validity of the candidates identified requires that selection sweeps are very short, only containing the candidate gene with the nearest neighboring g...

  16. Accommodations in Teacher Education: Perspectives of Teacher Candidates with Learning Disabilities and Their Faculty Advisors

    Science.gov (United States)

    Csoli, Karen; Gallagher, Tiffany L.

    2012-01-01

    This study of teacher candidates with learning disabilities profiles their experience in a teacher education program. Two teacher candidates and their faculty advisors offer perspectives at various points during the teacher education program. Findings indicate that the teacher candidates were able to complete their required courses when their…

  17. Candidate Genes Detected in Transcriptome Studies are Strongly Dependent on Genetic Background

    DEFF Research Database (Denmark)

    Sarup, Pernille Merete; Sørensen, Jesper Givskov; Kristensen, Torsten Nygård; Hoffmann, Ary Anthony; Loeschcke, Volker; Paige, Ken N; Sørensen, Peter

    2011-01-01

    Whole genome transcriptomic studies can point to potential candidate genes for organismal traits. However, the importance of potential candidates is rarely followed up through functional studies and/or by comparing results across independent studies. We have analysed the overlap of candidate gene...

  18. An Analysis of the Candidate Teachers' Beliefs Related to Knowledge, Learning and Teaching

    Science.gov (United States)

    Bay, Erdal; Vural, Ömer Faruk; Demir, Servet; Bagceci, Birsen

    2015-01-01

    Candidate teachers have several beliefs related to their knowledge, learning and teaching. The purpose of this study is to analyze the beliefs of candidate teachers about knowledge, learning and teaching. Candidate teachers were assigned a scale and from the answers "belief points" were obtained based on their attitudes about these three…

  19. Candidate High Redshift and Primeval Galaxies in Hubble Deep Field South

    OpenAIRE

    Clements, D.L.; Eales, S. A.; Baker, A. C.

    1999-01-01

    We present the results of colour selection of candidate high redshift galaxies in Hubble Deep Field South (HDF-S) using the Lyman dropout scheme. The HDF-S data we discuss were taken in a number of different filters extending from the near--UV (F300W) to the infrared (F222M) in two different fields. This allows us to select candidates with redshifts from z~3 to z~12. We find 15 candidate z~3 objects (F300W dropouts), 1 candidate z~4 object (F450W dropout) and 16 candidate z$\\sim$5 objects (F6...

  20. Phosphate bonded ceramics as candidate final-waste-form materials

    International Nuclear Information System (INIS)

    Room-temperature setting phosphate-bonded ceramics were studied as candidate materials for stabilization of DOE low-level problem mixed wastes which cannot be treated by other established stabilization techniques. Phosphates of Mg, Mg-Na, Al and Zr were studied to stabilize ash surrogate waste containing RCRA metals as nitrates and RCRA organics. We show that for a typical loading of 35 wt.% of the ash waste, the phosphate ceramics pass the TCLP test. The waste forms have high compression strength exceeding ASTM recommendations for final waste forms. Detailed X-ray diffraction studies and differential thermal analyses of the waste forms show evidence of chemical reaction of the waste with phosphoric acid and the host matrix. The SEM studies show evidence of physical bonding. The excellent performance in the leaching tests is attributed to a chemical solidification and physical as well as chemical bonding of ash wastes in these phosphate ceramics

  1. Systematic errors in estimation of gravitational-wave candidate significance

    CERN Document Server

    Capano, Collin; Hu, Yi-Ming; Hendry, Martin; Messenger, Chris; Veitch, John

    2016-01-01

    We investigate the issue in determining the significance of candidate transient gravitational-wave events in a ground-based interferometer network. Given the presence of non-Gaussian noise artefacts in real data, the noise background must be estimated empirically from the data itself. However, the data also potentially contains signals, thus the background estimate may be overstated due to contributions from signals. It has been proposed to mitigate possible bias by removing single-detector data samples that pass a multi-detector consistency test from the background estimates. We conduct a high-statistics Mock Data Challenge to evaluate the effects of removing such samples, modelling a range of scenarios with plausible detector noise distributions and with a range of plausible foreground astrophysical signal rates. We consider the the two different modes: one in which coincident samples are removed, and one in which all samples are retained and used. Three algorithms were operated in both modes, show good con...

  2. Noncommutativity inspired Black Holes as Dark Matter Candidate

    CERN Document Server

    Kováčik, Samuel

    2015-01-01

    We study black holes with a source that is almost point-like (blurred), rather than exactly point-like, which could be caused by the noncommutativity of 3-space. Depending on its mass, such object has either none, one or two event horizons. It possesses new properties, which become important on microscopic scale, in particular the temperature of its Hawking radiation does not increase infinitely as its mass goes to zero, but vanishes instead. Such frozen, extremely dense pieces of matter are good dark matter candidate. In addition, we introduce an object oscillating between frozen black hole and naked (softened) singularity, such objects can serve as constituents of dark matter too. We call it gravimond.

  3. Physical and chemical characteristics of candidate wastes for tailored ceramics

    International Nuclear Information System (INIS)

    Tailored Ceramics offer a potential alternative to glass as an immobilization form for nuclear waste disposal. The form is applicable to the wide variety of existing wastes and may be tailored to suit the diverse environments being considered as disposal sites. Consideration of any waste product form, however, require extensive knowledge of the waste to be incorporated. A varity of waste types are under consideration for incorporation into a Tailored Ceramic form. This report integrates and summarizes chemical and physical characteristics of the candidate wastes. Included here are data on Savannah River Purex Process waste; Hanford bismuth phosphate, uranium recovery, redox, Purex, evaporator and residual liquid wastes; Idaho Falls calcine; Nuclear Fuel Services Purex and Thorex wastes and miscellaneous waste including estimated waste stream compositions produced by possible future commercial fuel reprocessing

  4. Maximized ExoEarth Candidate Yields for Starshades

    CERN Document Server

    Stark, Christopher C; Lisman, Doug; Cady, Eric; Savransky, Dmitry; Roberge, Aki; Mandell, Avi M

    2016-01-01

    The design and scale of a future mission to directly image and characterize potentially Earth-like planets will be impacted, to some degree, by the expected yield of such planets. Recent efforts to increase the estimated yields, by creating observation plans optimized for the detection and characterization of Earth-twins, have focused solely on coronagraphic instruments; starshade-based missions could benefit from a similar analysis. Here we explore how to prioritize observations for a starshade given the limiting resources of both fuel and time, present analytic expressions to estimate fuel use, and provide efficient numerical techniques for maximizing the yield of starshades. We implemented these techniques to create an approximate design reference mission code for starshades and used this code to investigate how exoEarth candidate yield responds to changes in mission, instrument, and astrophysical parameters for missions with a single starshade. We find that a starshade mission operates most efficiently so...

  5. Piperidine renin inhibitors: from leads to drug candidates.

    Science.gov (United States)

    Märki, H P; Binggeli, A; Bittner, B; Bohner-Lang, V; Breu, V; Bur, D; Coassolo, P H; Clozel, J P; D'Arcy, A; Doebeli, H; Fischli, W; Funk, C H; Foricher, J; Giller, T; Grüninger, F; Guenzi, A; Güller, R; Hartung, T; Hirth, G; Jenny, C H; Kansy, M; Klinkhammer, U; Lave, T; Lohri, B; Luft, F C; Mervaala, E M; Müller, D N; Müller, M; Montavon, F; Oefner, C H; Qiu, C; Reichel, A; Sanwald-Ducray, P; Scalone, M; Schleimer, M; Schmid, R; Stadler, H; Treiber, A; Valdenaire, O; Vieira, E; Waldmeier, P; Wiegand-Chou, R; Wilhelm, M; Wostl, W; Zell, M; Zell, R

    2001-01-01

    Non-peptidomimetic renin inhibitors of the piperidine type represent a novel structural class of compounds potentially free of the drawbacks seen with peptidomimetic compounds so far. Synthetic optimization in two structural series focusing on improvement of potency, as well as on physicochemical properties and metabolic stability, has led to the identification of two candidate compounds 14 and 23. Both display potent and long-lasting blood pressure lowering effects in conscious sodium-depleted marmoset monkeys and double transgenic rats harboring both the human angiotensinogen and the human renin genes. In addition, 14 normalizes albuminuria and kidney tissue damage in these rats when given over a period of 4 weeks. These data suggest that treatment of chronic renal failure patients with a renin inhibitor might result in a significant improvement of the disease status. PMID:11347960

  6. Large screen approaches to identify novel malaria vaccine candidates.

    Science.gov (United States)

    Davies, D Huw; Duffy, Patrick; Bodmer, Jean-Luc; Felgner, Philip L; Doolan, Denise L

    2015-12-22

    Until recently, malaria vaccine development efforts have focused almost exclusively on a handful of well characterized Plasmodium falciparum antigens. Despite dedicated work by many researchers on different continents spanning more than half a century, a successful malaria vaccine remains elusive. Sequencing of the P. falciparum genome has revealed more than five thousand genes, providing the foundation for systematic approaches to discover candidate vaccine antigens. We are taking advantage of this wealth of information to discover new antigens that may be more effective vaccine targets. Herein, we describe different approaches to large-scale screening of the P. falciparum genome to identify targets of either antibody responses or T cell responses using human specimens collected in Controlled Human Malaria Infections (CHMI) or under conditions of natural exposure in the field. These genome, proteome and transcriptome based approaches offer enormous potential for the development of an efficacious malaria vaccine. PMID:26428458

  7. Spectroscopic analysis of four post-AGB candidates

    CERN Document Server

    Molina, R E; Pereira, C B; Ferro, A Arellano; Muneer, S

    2014-01-01

    We have done a detailed abundance analysis of four unexplored candidate post- Asymptotic Giant Branch(AGB) stars IRAS 13110 - 6629, IRAS 17579 - 3121, IRAS 18321 - 1401 and IRAS 18489 - 0629 using high resolution spectra. We have constructed Spectral Energy Distributions (SED) for these objects using the existing photometric data combined with infrared (IR) fluxes. For all sample stars, the SEDs exhibit double peaked energy distribution with well separated IR peaks showing the presence of dusty circumstellar material. The CNO abundances indicate the production of N via CN cycling, but observed [C/Fe] indicates the mixing of carbon produced by He burning by third dredge up although C/O ratio remains less that 1. A moderate DG effect is clearly seen for IRAS 18489 - 0629 and IRAS 17579 - 3121 while a large scatter observed in depletion plots for IRAS 18321 - 1401 and IRAS 13110 - 6629 indicate the presence of other processes affecting the observed abundance pattern.

  8. Dark Matter candidates in a baryogenesis inspired scenario

    International Nuclear Information System (INIS)

    It has recently been shown that the electroweak baryogenesis mechanism is feasible in Standard Model extensions containing extra fermions with large Yukawa couplings. We show that the lightest of these fermionic fields can naturally be a good candidate for cold dark matter. We find regions in the parameter space where the thermal relic abundance of this particle is compatible with the dark matter density of the Universe as determined by the WMAP experiment. We study direct and indirect dark matter detection for this model and compare with current experimental limits and prospects for upcoming experiments. We find, contrary to the standard lore, that indirect detection searches are more promising than direct ones, and they already exclude part of the parameter space

  9. SEASAT - A candidate ocean industry economic verification experiments

    Science.gov (United States)

    Miller, B. P.

    1976-01-01

    The economic benefits of an operational SEASAT system are discussed in the areas of marine transportation, offshore oil and natural gas exploration and development, ocean fishing, and Arctic operations. A description of the candidate economic verification experiments which could be performed with SEASAT-A is given. With the exception of the area of Arctic operations, experiments have been identified in each of the areas of ocean based activity that are expected to show an economic impact from the use of operational SEASAT data. Experiments have been identified in the areas of the offshore oil and natural gas industry, as well as ice monitoring and coastal zone applications. Emphasis has been placed on the identification and the development of those experiments which meet criteria for: (1) end user participation; (2) SEASAT-A data utility; (3) measurability of operational parameters to demonstrate economic effect; and (4) non-proprietary nature of results.

  10. Space exploration initiative candidate nuclear propulsion test facilities

    Science.gov (United States)

    Baldwin, Darrell; Clark, John S.

    1993-01-01

    One-page descriptions for approximately 200 existing government, university, and industry facilities which may be available in the future to support SEI nuclear propulsion technology development and test program requirements are provided. To facilitate use of the information, the candidate facilities are listed both by location (Index L) and by Facility Type (Index FT). The included one-page descriptions provide a brief narrative description of facility capability, suggest potential uses for each facility, and designate a point of contact for additional information that may be needed in the future. The Nuclear Propulsion Office at NASA Lewis presently plans to maintain, expand, and update this information periodically for use by NASA, DOE, and DOD personnel involved in planning various phases of the SEI Nuclear Propulsion Project.

  11. Stress corrosion cracking of candidate waste container materials

    International Nuclear Information System (INIS)

    Six alloys have been selected as candidate container materials for the storage of high-level nuclear waste at the proposed Yucca Mountain site in Nevada. These materials are Type 304L stainless steel (SS), Type 316L SS, Incology 825, P-deoxidized Cu, Cu-30%Ni, and Cu-7% Al. The present program has been initiated to determine whether any of these materials can survive for 300 years in the site environment without developing through-wall stress corrosion cracks, and to assess the relative resistance of these materials to stress corrosion cracking (SCC). A series of slow-strain-rate tests (SSRTs) in simulated Well J-13 water which is representative of the groundwater present at the Yucca Mountain site has been completed, and crack-growth-rate (CGR) tests are also being conducted under the same environmental conditions. 13 refs., 60 figs., 22 tabs

  12. Computational identification of candidate nucleotide cyclases in higher plants

    KAUST Repository

    Wong, Aloysius Tze

    2013-09-03

    In higher plants guanylyl cyclases (GCs) and adenylyl cyclases (ACs) cannot be identified using BLAST homology searches based on annotated cyclic nucleotide cyclases (CNCs) of prokaryotes, lower eukaryotes, or animals. The reason is that CNCs are often part of complex multifunctional proteins with different domain organizations and biological functions that are not conserved in higher plants. For this reason, we have developed CNC search strategies based on functionally conserved amino acids in the catalytic center of annotated and/or experimentally confirmed CNCs. Here we detail this method which has led to the identification of >25 novel candidate CNCs in Arabidopsis thaliana, several of which have been experimentally confirmed in vitro and in vivo. We foresee that the application of this method can be used to identify many more members of the growing family of CNCs in higher plants. © Springer Science+Business Media New York 2013.

  13. Annual Killifish Transcriptomics and Candidate Genes for Metazoan Diapause.

    Science.gov (United States)

    Thompson, Andrew W; Ortí, Guillermo

    2016-09-01

    Dormancy has evolved in all major metazoan lineages. It is critical for survival when environmental stresses are not conducive to growth, maturation, or reproduction. Embryonic diapause is a form of dormancy where development is reversibly delayed and metabolism is depressed. We report the diapause transcriptome of the annual killifish Nematolebias whitei, and compare gene expression between diapause embryos and free-living larvae to identify a candidate set of 945 differentially expressed "diapause" genes for this species. Similarity of transcriptional patterns among N. whitei and other diapausing animals is striking for a small set of genes associated with stress resistance, circadian rhythm, and metabolism, while other genes show discordant patterns. Although convergent evolution of diapause may require shared molecular mechanisms for fundamental processes, similar physiological phenotypes also may arise through modification of alternative pathways. Annual killifishes are a tractable model system for comparative transcriptomic studies on the evolution of diapause. PMID:27297470

  14. Candidate Identification and Interference Removal in SETI@home

    CERN Document Server

    Korpela, Eric J; Lebofsky, Matt; Siemion, Andrew; von Korff, Joshua; Bankay, Robert C; Werthimer, Dan; Anderson, David

    2011-01-01

    SETI@home, a search for signals from extraterrestrial intelligence, has been recording data at the Arecibo radio telescope since 1999. These data are sent via the Internet to the personal computers of volunteers who have donated their computers' idle time toward this search. To date, SETI@home volunteers have detected more than 4.2 billion potential signals. While essentially all of these potential signals are due to random noise processes, radio frequency interference (RFI), or interference processes in the SETI@home instrumentation, it is possible that a true extraterrestrial transmission exists within this database. Herein we describe the process of interference removal being implemented in the SETI@home post-processing pipeline, as well as those methods being used to identify candidates worthy of further investigation.

  15. Disformal scalars as dark matter candidates: Branon phenomenology

    CERN Document Server

    Cembranos, Jose A R

    2016-01-01

    Scalar particles coupled to the Standard Model fields through a disformal coupling arise in different theories, such as massive gravity or brane-world models. We will review the main phenomenology associated with such particles. Distinctive disformal signatures could be measured at colliders and with astrophysical observations. The phenomenological relevance of the disformal coupling demands the introduction of a set of symmetries, which may ensure the stability of these new degrees of freedom. In such a case, they constitute natural dark matter candidates since they are generally massive and weakly coupled. We will illustrate these ideas by paying particular attention to the branon case, since these questions arise naturally in brane-world models with low tension, where they were first discussed.

  16. COMPOSITIONS OF HOT SUPER-EARTH ATMOSPHERES: EXPLORING KEPLER CANDIDATES

    International Nuclear Information System (INIS)

    This paper outlines a simple approach to evaluate the atmospheric composition of hot rocky planets by assuming different types of planetary composition and using corresponding model calculations. To explore hot atmospheres above 1000 K, we model the vaporization of silicate magma and estimate the range of atmospheric compositions according to the planet's radius and semi-major axis for the Kepler 2011 February data release. Our results show five atmospheric types for hot, rocky super-Earth atmospheres, strongly dependent on the initial composition and the planet's distance to the star. We provide a simple set of parameters that can be used to evaluate atmospheric compositions for current and future candidates provided by the Kepler mission and other searches.

  17. Cathelicidin peptides as candidates for a novel class of antimicrobials.

    Science.gov (United States)

    Zanetti, Margherita; Gennaro, Renato; Skerlavaj, Barbara; Tomasinsig, Linda; Circo, Raffaella

    2002-01-01

    Cathelicidin peptides are a numerous group of mammalian cationic antimicrobial peptides. Despite a common evolutionary origin of their genes, peptides display a remarkable variety of sizes, sequences and structures. Their spectra of antimicrobial activity are varied and cover a range of organisms that includes bacteria, fungi and enveloped viruses. In addition, they bind to and neutralize the effects of endotoxin. These features make this family of peptides good candidates in view of a therapeutic use. The most promising ones are currently under evaluation as leads for the development of novel anti-infectives, and synthetic variants are in an advanced stage of development for specific clinical applications. This review focuses on recent studies on the structure and in vitro and in vivo biological activities of these peptides. PMID:11945171

  18. Characterization of the Higgs boson candidate at CMS

    Directory of Open Access Journals (Sweden)

    Zanetti Marco

    2013-05-01

    Full Text Available The first studies performed by the CMS collaborations of the properties of the recently discovered Higgs boson candidate are presented. The data sample considered corresponds to the integrated luminosity delivered by the LHC up to September 2012, 5.1 fb−1 at √s=7 TeV and 12.1 fb−1 at 8 TeV. The significance of the signal results 6.9 σ. The mass is measured to be 125.8 ±0.4 (stat ±0.4 (syst GeV. The individual analysis channels are combined and tested in various ways against the predictions of the SM in terms of the coupling structure, observing in all the cases a good agreement. Under the assumption that the observed boson has spin zero, the data disfavour the pseudo-scalar hypothesis 0− with a CLs value of 2.4%.

  19. Functional Insight From Fruit Flies on Human ADHD Candidate Genes

    DEFF Research Database (Denmark)

    Rohde, Palle Duun; Demontis, Ditte; Arvidson, Sandra Marie Neumann;

    2015-01-01

    of developing ADHD. We use Minos mutants, where target genes have been disrupted by the Minos transposable element, to test the effect on locomotor activity. By measuring the distance traveled, we find disparity in locomotor activity between control and Minos mutants. Impaired dopamine system...... underlies the majority of ADHD symptoms, and effective treatment is achieved with amphetamines. We fed flies with either 1.5 mg/ml dexamphetamine dissolved in 5% w/w sucrose or a 5% w/w sucrose solution. Treatment with dexamphetamine increased activity of controls and some Minos lines, and decreased...... activity levels for other mutants. Decreased activity level, when treated with dexamphetamine, is seen when using other ADHD animal models. Our findings suggest involvement of the proposed candidate genes Genes, Brain, and Behavior 2015 36 Talk Abstracts in hyperactivity in D. melanogaster, providing...

  20. Higgsphobic and fermiophobic Z' as a single dark matter candidate

    CERN Document Server

    Chen, Nan; Wang, Qing; Cacciapaglia, Giacomo; Deandrea, Aldo; Panizzi, Luca

    2014-01-01

    A spin-1 Z' particle as a single dark matter candidate is investigated by assuming that it does not directly couple to the Higgs boson and standard model fermions and does not mix with the photon and Z boson. The remaining dominant vertices are quartic Z'Z'ZZ and Z'Z'W+W-, which can induce effective Z'Z'q\\bar{q} couplings through standard-model gauge-boson loops. We discuss constraints from the cosmological thermal relic density, and direct and indirect-detection experiments, and find that a dark Z' can only exist above the W boson mass threshold, and the effective quartic coupling of Z'Z'VV is bounded in the region of 10^{-3}~10^{-2}.

  1. Candidate eco-friendly gas mixtures for MPGDs

    CERN Document Server

    Saviano, Giovanna

    2015-01-01

    Modern gas detectors for the detection of elementary particles, and MPGDs in particular, require F-based gases for optimal performance. Recent regulations demand the use of environmentally unfriendly F-based gases to be limited or banned. This work investigates the properties of potential eco-friendly gas candidate replacements. The aim is to discuss some of the important properties of gases for MPGDs, to list and summarize basic properties of eco-friendly refrigerants from the literature available, to discuss their properties for materials compatibility and safe use, and to make a prediction on selected parameters (i.e., ionization potentials, ionization pairs, etc) crucial for the performance of gas detectors considered by making use of both known parametrizations and quantum chemistry simulation codes.

  2. Disformal scalars as dark matter candidates — Branon phenomenology

    Science.gov (United States)

    Cembranos, Jose A. R.; Maroto, Antonio L.

    2016-05-01

    Scalar particles coupled to the Standard Model fields through a disformal coupling arise in different theories, such as massive gravity or braneworld models. We will review the main phenomenology associated with such particles. Distinctive disformal signatures could be measured at colliders and with astrophysical observations. The phenomenological relevance of the disformal coupling demands the introduction of a set of symmetries, which may ensure the stability of these new degrees of freedom. In such a case, they constitute natural dark matter candidates since they are generally massive and weakly coupled. We will illustrate these ideas by paying particular attention to the branon case, since these questions arise naturally in braneworld models with low tension, where they were first discussed.

  3. Event display of a H -> 4e candidate event

    CERN Multimedia

    ATLAS, Collaboration

    2012-01-01

    Event display of a H -> 4e candidate event with m(4l) = 124.5 (124.6) GeV without (with) Z mass constraint. The masses of the lepton pairs are 70.6 GeV and 44.7 GeV. The event was recorded by ATLAS on 18-May-2012, 20:28:11 CEST in run number 203602 as event number 82614360. The tracks and clusters of the two electron pairs are colored red and blue, respectively. The three displays on the right-hand side show the r-phi view of the event (top), a zoom into the vertex region, indicating that the 4 electrons originate from the same primary vertex (middle), and a Lego plot indicating the amount of transverse energy Et measured in the calorimeters (bottom).

  4. Event display of a H -> 4e candidate event

    CERN Multimedia

    ATLAS, Collaboration

    2012-01-01

    Event display (side view) of a H -> 4e candidate event with m(4l) = 124.5 (124.6) GeV without (with) Z mass constraint. The masses of the lepton pairs are 70.6 GeV and 44.7 GeV. The event was recorded by ATLAS on 18-May-2012, 20:28:11 CEST in run number 203602 as event number 82614360. The tracks of the two electron pairs are colored red and blue, respectively. Electron clusters in the LAr calorimeter are colored darkgreen. The three displays on the right-hand side show the r-phi view of the event (top), a zoom into the vertex region, indicating that the 4 electrons originate from the same primary vertex (middle), and a Lego plot indicating the amount of transverse energy Et measured in the calorimeters (bottom).

  5. ON THE LOW FALSE POSITIVE PROBABILITIES OF KEPLER PLANET CANDIDATES

    International Nuclear Information System (INIS)

    We present a framework to conservatively estimate the probability that any particular planet-like transit signal observed by the Kepler mission is in fact a planet, prior to any ground-based follow-up efforts. We use Monte Carlo methods based on stellar population synthesis and Galactic structure models, and report false positive probabilities (FPPs) for every Kepler Object of Interest, assuming a 20% intrinsic occurrence rate of close-in planets in the radius range 0.5 R+ p +. Nearly 90% of the 1235 candidates have FPP 10% to <1%. Since Kepler has detected many more planetary signals than can be positively confirmed with ground-based follow-up efforts in the near term, these calculations will be crucial to using the ensemble of Kepler data to determine population characteristics of planetary systems. We also describe how our analysis complements the Kepler team's more detailed BLENDER false positive analysis for planet validation.

  6. Vitamin D Status in Monkey Candidates for Space Flight

    Science.gov (United States)

    Arnaud, S. B.; Wronski, T. J.; Koslovskeya, I.; Dotsenko, R.; Navidi, M.; Wade, Charles E. (Technical Monitor)

    1994-01-01

    In preparation for the Cosmos 2229 Biosatellite space flight experiments in Rhesus monkeys, we evaluated the status of vitamin D in animals of different origins: candidates for space flight raised in Moscow (IMBP) and animals housed at Ames Research Ctr. (ARC) for pilot studies. Diets at IMBP were natural foods found by analysis to contain 1.4% Ca, 2.8% P andng/ml,p<.001) in IMBP than ARC animals. 1,25D (174156 vs. 212+77 pg/ml), Pi and AP were similar. In bone, osteoid and osteoblast surfaces averaged 38114% and 33+15% in all, with %vol. of osteoid higher in IMBP than ARC monkeys of the same BW (p<.05) Indices of bone formation were inversely related to 25D, not 1,25D. Of interest are similar 1,25D levels associated with a wide range of substrate and extensive osteoid in bone of D replete animals.

  7. Selection of Lactic Acid Bacteria as Probiotic Candidate for Chicken

    Directory of Open Access Journals (Sweden)

    F. Hamida

    2015-08-01

    Full Text Available Lactic acid bacteria (LAB regarded as safe microorganisms; they can naturally live in gastrointestinal tract, so appropriately used as a probiotic for chicken. This study aimed to select six isolates of LAB (E1223, E3, E4, E5, E7, and E8 to obtain the isolates potentially as probiotic candidate for chicken. The six isolates were derived from spontaneous fermented corn obtained from Laboratory of Animal Biotechnology and Biomedical, PPSHB, Bogor Agricultural University, Indonesia. LAB isolates were tested their susceptibility to antibiotics (bambermycin, erythromycin, chloramphenicol, and tetracycline then were examined in vitro for their tolerance to gastrointestinal pH (2, 3, 4, and 7.2 and 0.5% bile salt condition, antimicrobial activity against Salmonella enteritidis and Enterococcus casseliflavus, and ability to adhere to chicken ileal cells. The results showed the isolates E5, E7, and E8 were sensitive to tetracycline and chloramphenicol, they could survive at pH 2, 3, 4, and 7.2, could survive at 0.5% bile salts, produced antimicrobial activity, and able to adhere to ileal cells (9.40±0.00 Log CFU/cm2 of E8 and were significantly (P<0.05 higher than those of control (5.30±0.14 Log CFU/cm2. In conclusion, this study showed that isolate E8 had better potential compared to isolates E5 and E7 in most in vitro assays as a probiotic candidate for chicken. E5, E7, and E8 were closely related with Pediococcus pentosaceus based on 16S rRNA gene.

  8. Intracoronary stem cell infusion in heart transplant candidates

    International Nuclear Information System (INIS)

    The stem cell transplantation is emerging as a potential therapeutic modality for patients with heart failure. It has been demonstrated that intracoronary stem cell transplantation had beneficial effects on left ventricular perfusion and contractile functions. We hypothesized that patients with end-stage ischemic cardiomyopathy, who are candidates for heart transplantation, could also benefit from autologous intracoronary stem cell transplantation. We performed a prospective, open-labeled study in 10 patients with end-stage ischemic cardiomyopathy, who were on the waiting list for heart transplantation. Each patient received bone marrow-derived mononuclear cell infusion via balloon catheter in the target vessel, which had been revascularized by percutaneous intervention and was patent before the procedure. Clinical and laboratory evaluations, a treadmill exercise test, echocardiography, and single photon emission tomography (SPECT) were performed to the patients at baseline and 6 months after stem cell infusion. At 6-month follow-up of the eight patients who were able to complete the study, we revealed a significant increase in ejection fraction (from 30.0±6.6% to 36.2±7.3%; p=0.001) in echocardiographic evaluation. SPECT evaluation also displayed a reduction in infarct area (50.4±16.1% to 44.1±12.5%; p=0.003). Both myocardial oxygen consumption (p=0.001) and metabolic equivalents (p=0.001) were significantly increased at 6-month follow-up. These results demonstrate that intracoronary stem cell transplantation ameliorates heart failure symptoms and improves left ventricular function and perfusion. Therefore intracoronary stem cell transplantation may be used as an alternative treatment option for heart transplant candidates. (author)

  9. Four Dual AGN Candidates Observed with the VLBA

    Science.gov (United States)

    Gabányi, K. É.; An, T.; Frey, S.; Komossa, S.; Paragi, Z.; Hong, X.-Y.; Shen, Z.-Q.

    2016-08-01

    According to hierarchical structure formation models, merging galaxies are expected to be seen in different stages of coalescence. However, there are currently no straightforward observational methods to either select or to confirm a large number of dual active galactic nucleus (AGN) candidates. Most attempts involve obtaining a better understanding of double-peaked narrow emission line sources, in order to distinguish the objects for which the emission lines originate from narrow-line kinematics or jet-driven outflows, from those which might harbor dual AGNs. We observed four such candidate sources with the Very Long Baseline Array (VLBA), at 1.5 GHz with a ∼10 mas angular resolution, for which the spectral profiles of AGN optical emission suggested the existence of dual AGNs. In SDSS J210449.13–000919.1 and SDSS J23044.82–093345.3 the radio structures are aligned with the optical emission features, thus the double-peaked emission lines might be the results of jet-driven outflows. In the third detected source SDSS J115523.74+150756.9, the radio structure is less extended and is oriented nearly perpendicular to the position angle derived from optical spectroscopy. The fourth source remained undetected with the VLBA, but it was imaged with the Very Large Array at arcsec resolution a few months before our observations, suggesting the existence of an extended radio structure. We did not detect two radio-emitting cores in any of the four sources, a convincing signature of duality.

  10. A candidate multimodal functional genetic network for thermal adaptation

    Directory of Open Access Journals (Sweden)

    Katharina C. Wollenberg Valero

    2014-09-01

    Full Text Available Vertebrate ectotherms such as reptiles provide ideal organisms for the study of adaptation to environmental thermal change. Comparative genomic and exomic studies can recover markers that diverge between warm and cold adapted lineages, but the genes that are functionally related to thermal adaptation may be difficult to identify. We here used a bioinformatics genome-mining approach to predict and identify functions for suitable candidate markers for thermal adaptation in the chicken. We first established a framework of candidate functions for such markers, and then compiled the literature on genes known to adapt to the thermal environment in different lineages of vertebrates. We then identified them in the genomes of human, chicken, and the lizard Anolis carolinensis, and established a functional genetic interaction network in the chicken. Surprisingly, markers initially identified from diverse lineages of vertebrates such as human and fish were all in close functional relationship with each other and more associated than expected by chance. This indicates that the general genetic functional network for thermoregulation and/or thermal adaptation to the environment might be regulated via similar evolutionarily conserved pathways in different vertebrate lineages. We were able to identify seven functions that were statistically overrepresented in this network, corresponding to four of our originally predicted functions plus three unpredicted functions. We describe this network as multimodal: central regulator genes with the function of relaying thermal signal (1, affect genes with different cellular functions, namely (2 lipoprotein metabolism, (3 membrane channels, (4 stress response, (5 response to oxidative stress, (6 muscle contraction and relaxation, and (7 vasodilation, vasoconstriction and regulation of blood pressure. This network constitutes a novel resource for the study of thermal adaptation in the closely related nonavian reptiles and

  11. Surface segregation in binary alloy first wall candidate materials

    International Nuclear Information System (INIS)

    We have been studying the conditions necessary to produce a self-sustaining stable lithium monolayer on a metal substrate as a means of creating a low-Z film which sputters primarily as secondary ions. It is expected that because of the toroidal field, secondary ions originating at the first wall will be returned and contribute little to the plasma impurity influx. Aluminum and copper have, because of their high thermal conductivity and low induced radioactivity, been proposed as first wall candidate materials. The mechanical properties of the pure metals are very poorly suited to structural applications and an alloy must be used to obtain adequate hardness and tensile strength. In the case of aluminum, mechanical properties suitable for aircraft manufacture are obtained by the addition of a few at% Li. In order to investigate alloys of a similar nature as candidate structural materials for fusion machines we have prepared samples of Li-doped aluminum using both a pyro-metallurgical and a vapor-diffusion technique. The sputtering properties and surface composition have been studied as a function of sample temperature and heating time, and ion beam mass. The erosion rate and secondary ion yield of both the sputtered Al and Li have been monitored by secondary ion mass spectroscopy and Auger analysis providing information on surface segregation, depth composition profiles, and diffusion rates. The surface composition ahd lithium depth profiles are compared with previously obtained computational results based on a regular solution model of segregation, while the partial sputtering yields of Al and Li are compared with results obtained with a modified version of the TRIM computer program. (orig.)

  12. Canister filling materials -- Design requirements and evaluation of candidate materials

    International Nuclear Information System (INIS)

    SKB has been evaluating a copper/steel canister for use in the disposal of spent nuclear reactor fuel. Once the canister is breached by corrosion, it is possible that the void volume inside the canister might fill with water. Water inside the canister would moderate the energy of the neutrons emitted by spontaneous fission in the fuel. It the space in the canister between and around the fuel pins is occupied by canister filling materials, the potential for criticality is avoided. The authors have developed a set of design requirements for canister filling material for the case where it is to be used alone, with no credit for burnup of the fuel or other measures, such as the use of neutron absorbers. Requirements were divided into three classes: essential requirements, desirable features, and undesirable features. The essential requirements are that the material fill at least 60% of the original void space, that the solubility of the filling material be less than 100 mg/l in pure water or expected repository waters at 50 C, and that the material not compact under its own weight by more than 10%. In this paper they review the reasons for these requirements, the desirable and undesirable features, and evaluate 11 candidate materials with respect to the design requirements and features. The candidate materials are glass beads, lead shot, copper spheres, sand, olivine, hematite, magnetite, crushed rock, bentonite, other clays, and concrete. Emphasis is placed on the determination of whether further work is needed to eliminate uncertainties in the evaluation of the ability of a particular filling material to be successfully used under actual conditions, and on the ability to predict the long-term performance of the material under the repository conditions

  13. Computational selection and prioritization of candidate genes for Fetal Alcohol Syndrome

    Directory of Open Access Journals (Sweden)

    Hide Winston

    2007-10-01

    Full Text Available Abstract Background Fetal alcohol syndrome (FAS is a serious global health problem and is observed at high frequencies in certain South African communities. Although in utero alcohol exposure is the primary trigger, there is evidence for genetic- and other susceptibility factors in FAS development. No genome-wide association or linkage studies have been performed for FAS, making computational selection and -prioritization of candidate disease genes an attractive approach. Results 10174 Candidate genes were initially selected from the whole genome using a previously described method, which selects candidate genes according to their expression in disease-affected tissues. Hereafter candidates were prioritized for experimental investigation by investigating criteria pertinent to FAS and binary filtering. 29 Criteria were assessed by mining various database sources to populate criteria-specific gene lists. Candidate genes were then prioritized for experimental investigation using a binary system that assessed the criteria gene lists against the candidate list, and candidate genes were scored accordingly. A group of 87 genes was prioritized as candidates and for future experimental validation. The validity of the binary prioritization method was assessed by investigating the protein-protein interactions, functional enrichment and common promoter element binding sites of the top-ranked genes. Conclusion This analysis highlighted a list of strong candidate genes from the TGF-β, MAPK and Hedgehog signalling pathways, which are all integral to fetal development and potential targets for alcohol's teratogenic effect. We conclude that this novel bioinformatics approach effectively prioritizes credible candidate genes for further experimental analysis.

  14. Structure and evolution of barley powdery mildew effector candidates

    Directory of Open Access Journals (Sweden)

    Pedersen Carsten

    2012-12-01

    Full Text Available Abstract Background Protein effectors of pathogenicity are instrumental in modulating host immunity and disease resistance. The powdery mildew pathogen of grasses Blumeria graminis causes one of the most important diseases of cereal crops. B. graminis is an obligate biotrophic pathogen and as such has an absolute requirement to suppress or avoid host immunity if it is to survive and cause disease. Results Here we characterise a superfamily predicted to be the full complement of Candidates for Secreted Effector Proteins (CSEPs in the fungal barley powdery mildew parasite B. graminis f.sp. hordei. The 491 genes encoding these proteins constitute over 7% of this pathogen’s annotated genes and most were grouped into 72 families of up to 59 members. They were predominantly expressed in the intracellular feeding structures called haustoria, and proteins specifically associated with the haustoria were identified by large-scale mass spectrometry-based proteomics. There are two major types of effector families: one comprises shorter proteins (100–150 amino acids, with a high relative expression level in the haustoria and evidence of extensive diversifying selection between paralogs; the second type consists of longer proteins (300–400 amino acids, with lower levels of differential expression and evidence of purifying selection between paralogs. An analysis of the predicted protein structures underscores their overall similarity to known fungal effectors, but also highlights unexpected structural affinities to ribonucleases throughout the entire effector super-family. Candidate effector genes belonging to the same family are loosely clustered in the genome and are associated with repetitive DNA derived from retro-transposons. Conclusions We employed the full complement of genomic, transcriptomic and proteomic analyses as well as structural prediction methods to identify and characterize the members of the CSEPs superfamily in B. graminis f

  15. Assessment of the candidate markets for liquid boiler fuels

    Energy Technology Data Exchange (ETDEWEB)

    None

    1979-12-01

    Liquid fuels can be produced from coal in a number of indirect and direct liquefaction processes. While indirect coal liquefaction has been proved commercially outside the United States, most attention in this country has focused on the direct liquefaction processes, which include the processes under examination in this report; namely, the Exxon Donor Solvent (EDS), the H-Coal, and the Solvent Refined Coal (SRC) II processes. The objectives of the study were to: compare the boiler fuels of direct coal liquefaction with residual fuel oil (No. 6 fuel oil) including physical characteristics and environmental hazards, such as carcinogenic characteristics and toxic hazard characteristics; determine whether a boiler fuel market would exist for the coal liquefaction products given their physical characteristics and potential environmental hazards; determine the advantages of utilizing methanol as a boiler fuel on a continuous basis in commercial boilers utilizing existing technology; identify the potential regional candidate markets for direct coal liquefaction products as liquid boiler fuels; determine the distributing and handling costs associated with marketing coal liquefaction products as liquid boiler fuels; determine the current regulatory issues associated with the marketing of coal liquefaction products as boiler fuels; and determine and evaluate other institutional issues associated with the marketing of direct coal liquefaction products as boiler fuels.

  16. Expression cloning of a candidate gene for Mucolipidosis type IV

    Energy Technology Data Exchange (ETDEWEB)

    Gama Sosa, M.A.; De Gasperi, R.; Battistini, S. [New York Univ. School of Medicine, NY (United States)] [and others

    1994-09-01

    Mucolipidosis IV is an autosomal recessive lysosomal storage disease characterized by progressive psychomotor retardation and opthalmological abnormalities, namely corneal opacity and retinal degeneration. Biochemically, it is characterized by the lysosomal accumulation of diverse compounds such as gangliosides, phospholipids and acidic mucopolysaccharides. To date, the basic biochemical defect causing this storage disease is still unknown and the relevant gene has also not been identified. An expression cloning strategy was used to identify human kidney cDNA clones capable of reverting in transient gene expression assays the PAS+ phenotype typical of Mucolipidosis IV cells to the normal PAS- phenotype. By this method, a candidate cDNA clone (Mu cDNA) capable of clearing Mucolipidosis IV fibroblasts of their PAS+ positive storage material was isolated. Nucleotide sequence analysis indicated the presence of 2 open reading frames. In vitro translation of T7 transcribed Mu RNA showed protein products of 7,000 and 6,000 mw. Altered expression of the Mu gene may result in the onset of Mucolipidosis type IV.

  17. Candidate Gravitational Microlensing Events for Future Direct Lens Imaging

    CERN Document Server

    Henderson, C B; Sumi, T; Udalski, A; Gould, A; Tsapras, Y; Han, C; Gaudi, B S; Bozza, V; Abe, F; Bennett, D P; Bond, I A; Botzler, C S; Freeman, M; Fukui, A; Fukunaga, D; Itow, Y; Koshimoto, N; Ling, C H; Masuda, K; Matsubara, Y; Muraki, Y; Namba, S; Ohnishi, K; Rattenbury, N J; Saito, To; Sullivan, D J; Suzuki, D; Sweatman, W L; Tristram, P J; Tsurumi, N; Wada, K; Yamai, N; Yock, P C M; Yonehara, A; Szymański, M K; Kubiak, M; Pietrzyński, G; Soszyński, I; Skowron, J; Kozłowski, S; Poleski, R; Ulaczyk, K; Wyrzykowski, Ł; Pietrukowicz, P; Almeida, L A; Bos, M; Choi, J -Y; Christie, G W; Depoy, D L; Dong, Subo; Friedmann, M; Hwang, K -H; Jablonski, F; Jung, Y K; Kaspi, S; Lee, C -U; Maoz, D; McCormick, J; Moorhouse, D; Natusch, T; Ngan, H; Pogge, R W; Shin, I -G; Shvartzvald, Y; Tan, T -G; Thornley, G; Yee, J C; Allan, A; Bramich, D M; Browne, P; Dominik, M; Horne, K; Hundertmark, M; Jaimes, R Figuera; Kains, N; Snodgrass, C; Steele, I A; Street, R A

    2014-01-01

    The mass of the lenses giving rise to Galactic microlensing events can be constrained by measuring the relative lens-source proper motion and lens flux. The flux of the lens can be separated from that of the source, companions to the source, and unrelated nearby stars with high-resolution images taken when the lens and source are spatially resolved. For typical ground-based adaptive optics (AO) or space-based observations, this requires either inordinately long time baselines or high relative proper motions. We provide a list of microlensing events toward the Galactic Bulge with high relative lens-source proper motion that are therefore good candidates for constraining the lens mass with future high-resolution imaging. We investigate all events from 2004 -- 2013 that display detectable finite-source effects, a feature that allows us to measure the proper motion. In total, we present 20 events with mu >~ 8 mas/yr. Of these, 14 were culled from previous analyses while 6 are new, including OGLE-2004-BLG-368, MOA...

  18. Identification of candidate millisecond pulsars from Fermi LAT observations

    Science.gov (United States)

    Dai, Xue-Jie; Wang, Zhong-Xiang; Vadakkumthani, Jithesh; Xing, Yi

    2016-06-01

    We report our detailed data analysis of 39 γ-ray sources selected from the 992 unassociated sources in the third Fermi Large Area Telescope Third Source Catalog. The selection criteria, which were set for finding candidate millisecond pulsars (MSPs), are non-variables with curved spectra and >5° Galactic latitudes. From our analysis, 24 sources were found to be point-like sources not contaminated by background or nearby unknown sources. Three of them, J1544.6–1125, J1625.1–0021 and J1653.6–0158, have been previously studied, indicating that they are likely MSPs. The spectra of J0318.1+0252 and J2053.9+2922 do not have properties similar to known γ-ray MSPs, and we thus suggest that they are not MSPs. Analysis of archival X-ray data for most of the 24 sources was also conducted. Four sources were found with X-ray objects in their error circles, and 16 with no detection. The ratios between the γ-ray fluxes and X-ray fluxes or flux upper limits are generally lower than those of known γ-ray MSPs, suggesting that if the γ-ray sources are MSPs, none of the X-ray objects are their counterparts. Deep X-ray or radio observations of these sources are needed in order to identify their MSP nature.

  19. Testing of Candidate Icons to Identify Acetaminophen-Containing Medicines

    Directory of Open Access Journals (Sweden)

    Saul Shiffman

    2016-01-01

    Full Text Available Adding icons on labels of acetaminophen-containing medicines could help users identify the active ingredient and avoid concomitant use of multiple medicines containing acetaminophen. We evaluated five icons for communication effectiveness. Adults (n = 300 were randomized to view a prescription container label or over-the-counter labels with either one or two icons. Participants saw two icon candidates, and reported their interpretation; experts judged whether these reflected critical confusions that might cause harm. Participants rated how effectively each icon communicated key messages. Icons based on abbreviations of “acetaminophen” (“Ac”, “Ace”, “Acm” were rated less confusing and more effective in communicating the active ingredient than icons based on “APAP” or an abstract symbol. Icons did not result in critical confusion when seen on a readable medicine label. Icon implementation on prescription labels was more effective at communicating the warning against concomitant use than implementation on over-the-counter (OTC labels. Adding an icon to a second location on OTC labels did not consistently enhance this communication, but reduced rated effectiveness of acetaminophen ingredient communication among participants with limited health literacy. The abbreviation-based icons seem most suitable for labeling acetaminophen-containing medications to enable users to identify acetaminophen-containing products.

  20. Corrosion of candidate container materials by Yucca Mountain bacteria

    International Nuclear Information System (INIS)

    Several candidate container materials have been studied in modified Yucca Mountain (YM) ground water in the presence or absence of YM bacteria. YM bacteria increased corrosion rates by 5--6 fold in UNS G10200 carbon steel, and nearly 100-fold in UNS N04400 Ni-Cu alloy. YM bacteria caused microbiologically influenced corrosion (MIC) through de-alloying or Ni-depletion of Ni-Cu alloy as evidenced by scanning electronic microscopy (SEM) and inductively coupled plasma spectroscopy (ICP) analysis. MIC rates of more corrosion-resistant alloys such as UNS N06022 Ni-Cr-Mo- W alloy, UNS N06625 Ni-Cr-Mo alloy, and UNS S30430 stainless steel were measured below 0.05 microm/yr, however YM bacteria affected depletion of Cr and Fe relative to Ni in these materials. The chemical change on the metal surface caused by depletion was characterized in anodic polarization behavior. The anodic polarization behavior of depleted Ni-based alloys was similar to that of pure Ni

  1. Discovery of optical candidate supernova remnants in Sagittarius

    CERN Document Server

    Alikakos, J; Christopoulou, P E; Goudis, C D

    2012-01-01

    During an [O III] survey for planetary nebulae, we identified a region in Sagittarius containing several candidate Supernova Remnants and obtained deep optical narrow-band images and spectra to explore their nature. The images of the unstudied area have been obtained in the light of Halpha+[N II], [S II] and [O III]. The resulting mosaic covers an area of 1.4x1.0 deg^2 where filamentary and diffuse emission was discovered, suggesting the existence of more than one supernova remnants (SNRs) in the area. Deep long slit spectra were also taken of eight different regions. Both the flux calibrated images and the spectra show that the emission from the filamentary structures originates from shock-heated gas, while the photo-ionization mechanism is responsible for the diffuse emission. Part of the optical emission is found to be correlated with the radio at 4850 MHz suggesting their association, while the WISE infrared emission found in the area at 12 and 22 micron marginally correlates with the optical. The presenc...

  2. RAFT I: New planetary candidates from archival FEROS spectra

    Science.gov (United States)

    Soto, Maritza Gabriela

    2015-12-01

    I will present initial results from our RAFT program (Reanalysis of Archival FEROS specTra) that was published in MNRAS (Soto et al. 2015, MNRAS, 451, 3131S). This project was motivated by the strikingly different conclusions several authors have arrived at after analyzing radial velocities measured using the FEROS spectrograph, throwing some doubt on the validity of a number of planet detections. We have reanalyzed the stars HD 11977, HD 47536, HD 70573, HD 110014 and HD 122430, all of which are claimed to have at least one planetary companion, and I will discuss the results from this work. In particular, we confirmed the existence of planets around HD 11977, HD 47536 and HD 110014, we found no evidence of the second planet candidate around HD 47536, nor any companions orbiting HD 122430 and HD 70573, and finally, we discovered a second planet orbiting HD 110014. These results confirm that very metal-poor stars down to [Fe/H] ~ -0.7 dex, can indeed form giant planets given the right conditions.

  3. THE LICK-CARNEGIE SURVEY: FOUR NEW EXOPLANET CANDIDATES

    International Nuclear Information System (INIS)

    We present new precise HIRES radial velocity (RV) data sets of five nearby stars obtained at Keck Observatory. HD 31253, HD 218566, HD 177830, HD 99492, and HD 74156 are host stars of spectral classes F through K and show RV variations consistent with new or additional planetary companions in Keplerian motion. The orbital parameters of the candidate planets in the five planetary systems span minimum masses of M sin i = 27.43 M+ to 8.28 MJ, periods of 17.05-4696.95 days and eccentricities ranging from circular to extremely eccentric (e ∼ 0.63). The fifth star, HD 74156, was known to have both a 52 day and a 2500 day planet, and was claimed to also harbor a third planet at 336 days, in apparent support of the 'Packed Planetary System' hypothesis. Our greatly expanded data set for HD 74156 provides strong confirmation of both the 52 day and 2500 day planets, but strongly contradicts the existence of a 336 day planet, and offers no significant evidence for any other planets in the system.

  4. Differential and integral experiments of neutron multiplier candidate elements

    International Nuclear Information System (INIS)

    Using the Time-of-Flight technique to measure double differential neutron emission cross sections, (n, 2n) cross sections at 14 MeV incident neutron energy were obtained for Be, Pb and Bi which are representative elements for neutron multiplier candidates. Secondary neutron spectra and angular distributions were also obtained. From these differential experiments, secondary neutron spectra for Be and Pb showed different spectral shapes from those of ENDF/B-IV. Obtained (n, 2n) cross section for Pb is by 20% larger than the evaluated value of ENDF/B-IV. Measurements of neutron multiplication factors by spherical shells were carried out, for Pb only, to measure total leakage current spectra in the energy range 15 MeV to 10 KeV. Results were compared with calculated multiplication factors by the 1-d Ssub(n) code NITRAN with ENDF/B-IV data. Experimental multiplication factors were by 10 to 12 % larger than the calculated. Sensitivity analysis was applied to explain the consistency between differential and integral results, for Pb. The sensitivity of (n, 2n) cross section to multiplication factor explained clearly that both of differential and integral experiment for Pb showed the same result. (author)

  5. [Surgical evaluation of candidates for donation. Selection of the kidney].

    Science.gov (United States)

    Corral Molina, Juan M; Luque Gálvez, Pilar; Agud Piqué, Anna; Alcover García, Juan B

    2005-01-01

    Living donation for kidney transplantation is being promoted due to the shortage of organs, the improved outcomes of living donor transplants and the evolution of immunosuppression regimens. The process of organ donation from a living donor affects not only medical-surgical features but also emotional, social and economic. Using kidneys from living donors involves a great responsibility in evaluation and selection. Candidates for donation undergo an extensive set of examinations in order to optimize selection and to plan surgery. Radiological evaluation is one of the most important features of the evaluation process and selection of the kidney; it shows precisely the renal vascular anatomy, which is decisive in the choice of the kidney and helps to optimize the process and diminish risks and complications during extraction and/or tronsplantation. The advantages on imaging tests allow to evaluate potential donors in a safely, fast and almost noninvasive matter. The aim of the process is to select the kidney with less likelihood of failure due to technical reasons, and always leave the best kidney for the donor. PMID:16138762

  6. Integrated recycling technology as a candidate for best available techniques

    Directory of Open Access Journals (Sweden)

    R. Nowosielski

    2008-07-01

    Full Text Available Purpose: In this article the integrated recycling technology and the integrated recycling technology model as afuture candidate for best available techniques (BAT are presented.Design/methodology/approach: The paper shows one of the procedures for selection a determinant ofemission standards – BAT, which are a basis of BAT reference documents (BREFs.Findings: The works relating to the emission standards stating according to best available techniques should havemore and more meaning for all Member States and for Poland also. One of these activities is search of the best integratedrecycling technology which allows to neutralize the definite part of waste in the most effective and simplest way.Research limitations/implications: To protect the environment it is necessary a continuous adjusting to BATrequirements. It is always possible to find the better, effective or cheaper methods of the environment protection(e.g. the integrated recycling technology model proposed.Practical implications: The implementation of the IPPC Directive requirements makes possible thetechnological processes realization with full protect of the environment. It refers to the recycling technologies too.Therefore, it is necessary to find the best integrated recycling technology which guarantees total waste reduction.Originality/value: In this paper paid attention to the problem of the integrated recycling technologies. Theproposed integrated recycling technology model is not only ecologically and technically practicable but alsogenerates small costs.

  7. Testing adiabatic contraction of dark matter in fossil group candidates

    CERN Document Server

    Democles, J; Pierini, D; Arnaud, M; Zibetti, S; D'Onghia, E

    2010-01-01

    We present deep XMM observations and ESO WFI optical imaging of two X-ray-selected fossil group candidates, RXCJ0216.7-4749 and RXCJ2315.7-0222. Using the X-ray data, we derive total mass profiles under the hydrostatic equilibrium assumption. The central regions of RXCJ0216.7-4749 are found to be dominated by an X-ray bright AGN, and although we derive a mass profile, uncertainties are large and the constraints are significantly weakened due to the presence of the central source. The total mass profile of RXCJ2315.7-0222 is of high quality, being measured in fifteen bins from [0.075 - 0.75]R500 and containing three data points interior to 30 kpc, allowing comprehensive investigation of its properties. We probe several mass models based on the standard NFW profile or on the Sersic-like model recently suggested by high-resolution N-body simulations. We find that the addition of a stellar component due to the presence of the central galaxy is necessary for a good analytical model fit. In all mass profile models ...

  8. Humans Need Not Apply: Robotization of Kepler Planet Candidate Vetting

    Science.gov (United States)

    Coughlin, Jeffrey; Mullally, Fergal; Thompson, Susan E.; Kepler Team

    2015-01-01

    Until now, the vast majority of Kepler planet candidate vetting has been performed by a dedicated team of humans. While human expertise has been invaluable in understanding the nuances of Kepler data, human vetting is very time-consuming and can be inconsistent. Over 20,000 threshold crossing events have been produced by the latest pipeline run on all 17 quarters of Kepler mission data, and many more artificial planet transits have been injected to estimate completeness. Given these large numbers, human vetting is no longer feasible on a reasonable time-scale, and would be difficult to characterize. We have created automated vetting programs known as "robovetters" that are specifically designed to mimic the decision-making process employed by the humans. They analyze both the light curve and pixel-level data in order to produce specific reasons for identifying false positives. We present benchmark tests on the Q1-Q16 Kepler planet catalog, which was vetted by humans, and present preliminary robovetter results based on a recent transit-search of the newly reprocessed Q1-Q17 data set.

  9. Spectroscopy of Young Planetary Mass Candidates with Disks

    CERN Document Server

    Jayawardhana, R; Jayawardhana, Ray; Ivanov, Valentin D.

    2006-01-01

    It is now well established that many young brown dwarfs exhibit characteristics similar to classical T Tauri stars, including infrared excess from disks and emission lines related to accretion. Whether the same holds true for even lower mass objects, namely those near and below the Deuterium-burning limit, is an important question. Here we present optical spectra of six isolated planetary mass candidates in Chamaeleon II, Lupus I and Ophiuchus star-forming regions, recently identified by Allers and collaborators to harbor substantial mid-infrared excesses. Our spectra, from ESO's Very Large Telescope and New Technology Telescope, show that four of the targets have spectral types in the ~M9-L1 range, and three of those also exhibit H_alpha. Their luminosities are consistent with masses of ~5-15 M_{Jupiter} according to models of Chabrier, Baraffe and co-workers, thus placing these four objects among the lowest mass brown dwarfs known to be surrounded by circum-sub-stellar disks. Our findings bolster the idea t...

  10. Candidate transcriptomic sources of inbreeding depression in Drosophila melanogaster.

    Directory of Open Access Journals (Sweden)

    Carlos Garcia

    Full Text Available The genomic causes of inbreeding depression are poorly known. Several studies have found widespread transcriptomic alterations in inbred organisms, but it remains unclear which of these alterations are causes of the depression and which are mere responses to the ensuing physiological stress induced by increased homozygosity due to inbreeding. Attempting to differentiate causes from responses, we made a c-DNA microarray analysis of inbreeding depression in Drosophila melanogaster. The rationale of the experiment was that, while depression is a general phenomenon involving reductions in fitness in different inbred lines, its first genetic causes would be different for each inbred line, as they are expected to be caused by the fixation of rare deleterious genes. We took four sets of inbred sublines, each set descending from a different founding pair obtained from a large outbred stock, and compared the expression of the three most depressed sublines and the three least depressed sublines from each set. Many changes in expression were common to all sets, but fourteen genes, grouped in four expression clusters, showed strong set-specific changes, and were therefore possible candidates to be sources of the inbreeding depression observed.

  11. Consortium analysis of 7 candidate SNPs for ovarian cancer

    DEFF Research Database (Denmark)

    Ramus, S.J.; Vierkant, R.A.; Johnatty, S.E.;

    2008-01-01

    The Ovarian Cancer Association Consortium selected 7 candidate single nucleotide polymorphisms (SNPs), for which there is evidence from previous studies of an association with variation in ovarian cancer or breast cancer risks. The SNPs selected for analysis were F31I (rs2273535) in AURKA, N372H...... suggestive although no longer statistically significant (ordinal OR 0.92, 95% CI 0.79-1.06). This SNP has also been shown to have an association with decreased risk in breast cancer. There was a suggestion of an association for AURKA, when one study that caused significant study heterogeneity was excluded...... [ordinal OR 1.10 (95% CI 1.01-1.20) p = 0.027; dominant OR 1.12 (95% CI 1.01-1.24) p = 0.03]. The other 5 SNPs in BRCA2, CDKN2A, SRD5A2, CASP8 and TGFB1 showed no association with ovarian cancer risk; given the large sample size, these results can also be considered to be informative. These null results...

  12. Assessment of candidate plant DNA barcodes using the Rutaceae family

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    DNA barcoding is a rapidly developing frontier technology that is gaining worldwide attention.Here,seven regions (psbA-trnH,matK,ycf5,rpoC1,rbcL,ITS2,and ITS) with potential for use as DNA barcodes were tested for their ability to identify 300 samples of 192 species from 72 genera of the family Rutaceae.To evaluate each barcode’s utility for species authentication,PCR amplification efficiency,genetic divergence,and barcoding gaps were assessed.We found that the ITS2 region exhibited the highest inter-specific divergence,and that this was significantly higher than the intra-specific variation in the "DNA barcoding gap" assessment and Wilcoxon two-sample tests.The ITS2 locus had the highest identification efficiency among all tested regions.In a previous study,we found that ITS2 was able to discriminate a wide range of plant taxa,and here we confirmed that ITS2 was also able to discriminate a number of closely related species.Therefore,we propose that ITS2 is a promising candidate barcode for plant species identification.

  13. Some ferrocenyl chalcones as useful candidates for cancer treatment.

    Science.gov (United States)

    Janka, Vašková; Žatko, Daniel; Ladislav, Vaško; Pál, Perjési; Janka, Poráčová; Gabriela, Mojžišová

    2015-10-01

    Although knowledge of cancer management is extensive, mortality is not currently declining in this area. It is therefore important to implement a long-term strategy that would aim to prevent these serious diseases. Ferrocene-related organometallic compounds are promising candidates for design of new drugs since they can exhibit much greater biological activity than their phenyl analogs. In our work, we focused on investigating the cytotoxic and antiproliferative effects of five ferrocenyl derivatives toward selected tumor cell lines. We found that some of these substances significantly reduced Jurkat cell survival and, to a lesser extent, that of the HeLa, MCF7, A549, and MDA cells. Long-term treatment of HeLa cell cultures with these agents resulted in a significant blockade of formation of tumor cell colonies. We found that one of the mechanisms of action of the compounds is likely to display an effect on the redox state of the mitochondria at a final concentration of 10(-4) and 10(-5) mol l(-1). Of the compounds tested, the indanonyl ferrocene derivative (C) was the most effective, especially via glutathione depletion. Based on the obtained results, it can be concluded that synthetic substances containing iron have potential antitumor activity. PMID:26019120

  14. Identification of a candidate stem cell in human gallbladder.

    Science.gov (United States)

    Manohar, Rohan; Li, Yaming; Fohrer, Helene; Guzik, Lynda; Stolz, Donna Beer; Chandran, Uma R; LaFramboise, William A; Lagasse, Eric

    2015-05-01

    There are currently no reports of identification of stem cells in human gallbladder. The differences between human gallbladder and intrahepatic bile duct (IHBD) cells have also not been explored. The goals of this study were to evaluate if human fetal gallbladder contains a candidate stem cell population and if fetal gallbladder cells are distinct from fetal IHBD cells. We found that EpCAM+CD44+CD13+ cells represent the cell population most enriched for clonal self-renewal from primary gallbladder. Primary EpCAM+CD44+CD13+ cells gave rise to EpCAM+CD44+CD13+ and EpCAM+CD44+CD13- cells in vitro, and gallbladder cells expanded in vitro exhibited short-term engraftment in vivo. Last, we found that CD13, CD227, CD66, CD26 and CD49b were differentially expressed between gallbladder and IHBD cells cultured in vitro indicating clear phenotypic differences between the two cell populations. Microarray analyses of expanded cultures confirmed that both cell types have unique transcriptional profiles with predicted functional differences in lipid, carbohydrate, nucleic acid and drug metabolism. In conclusion, we have isolated a distinct clonogenic population of epithelial cells from primary human fetal gallbladder with stem cell characteristics and found it to be unique compared to IHBD cells. PMID:25765520

  15. Curcumin: A Natural Lead for Potential New Drug Candidates.

    Science.gov (United States)

    Oliveira, Ana Sofia; Sousa, Emília; Vasconcelos, Maria Helena; Pinto, Madalena

    2015-01-01

    Curcumin (1) is a secondary metabolite of turmeric, derived from Curcuma longa L. and was shown to have many biological activities. One of the most interesting properties of curcumin (1) is the antitumour activity allied with the ability to act as a multidrug resistance (MDR) modulator. Several curcumin derivatives have been synthesized with the purpose of discovering more information about the mechanisms of action, to establish structure-activity relationships (SAR), and to overcome pharmacokinetic problems. Over the past few decades, more potent and more stable curcumin derivatives have emerged with potential as drug candidates. Some important SAR studies pointed out that the unstable α,β-unsaturated diketone linker present in curcumin (1) may not be necessary for the antitumour activity; generally, shorter linkers result in more potent compounds than curcumin (1); the type of substituents and their substitution pattern are crucial regarding the biological activities of interest. Overall, the structure of curcumin (1) may represent an important basis for the development of more effective therapeutic agents, particularly in chemotherapy, as reflected by ongoing clinical trials. This article aims to review the synthesis and biological activities of curcumin (1) and derivatives, highlighting the MDR modulation properties of curcumin (1), since these effects makes this natural product a promising lead compound for the development of new anticancer drugs. PMID:26511469

  16. Identification of Novel Vaccine Candidates against Campylobacter through Reverse Vaccinology

    Science.gov (United States)

    Meunier, Marine; Guyard-Nicodème, Muriel; Chemaly, Marianne

    2016-01-01

    Campylobacteriosis is the most prevalent bacterial foodborne gastroenteritis affecting humans in the European Union. Human cases are mainly due to Campylobacter jejuni or Campylobacter coli, and contamination is associated with the handling and/or consumption of poultry meat. In fact, poultry constitutes the bacteria's main reservoir. A promising way of decreasing the incidence of campylobacteriosis in humans would be to decrease avian colonization. Poultry vaccination is of potential for this purpose. However, despite many studies, there is currently no vaccine available on the market to reduce the intestinal Campylobacter load in chickens. It is essential to identify and characterize new vaccine antigens. This study applied the reverse vaccinology approach to detect new vaccine candidates. The main criteria used to select immune proteins were localization, antigenicity, and number of B-epitopes. Fourteen proteins were identified as potential vaccine antigens. In vitro and in vivo experiments now need to be performed to validate the immune and protective power of these newly identified antigens. PMID:27413761

  17. Magnetic characterization of isolated candidate vertebrate magnetoreceptor cells.

    Science.gov (United States)

    Eder, Stephan H K; Cadiou, Hervé; Muhamad, Airina; McNaughton, Peter A; Kirschvink, Joseph L; Winklhofer, Michael

    2012-07-24

    Over the past 50 y, behavioral experiments have produced a large body of evidence for the existence of a magnetic sense in a wide range of animals. However, the underlying sensory physiology remains poorly understood due to the elusiveness of the magnetosensory structures. Here we present an effective method for isolating and characterizing potential magnetite-based magnetoreceptor cells. In essence, a rotating magnetic field is employed to visually identify, within a dissociated tissue preparation, cells that contain magnetic material by their rotational behavior. As a tissue of choice, we selected trout olfactory epithelium that has been previously suggested to host candidate magnetoreceptor cells. We were able to reproducibly detect magnetic cells and to determine their magnetic dipole moment. The obtained values (4 to 100 fAm(2)) greatly exceed previous estimates (0.5 fAm(2)). The magnetism of the cells is due to a μm-sized intracellular structure of iron-rich crystals, most likely single-domain magnetite. In confocal reflectance imaging, these produce bright reflective spots close to the cell membrane. The magnetic inclusions are found to be firmly coupled to the cell membrane, enabling a direct transduction of mechanical stress produced by magnetic torque acting on the cellular dipole in situ. Our results show that the magnetically identified cells clearly meet the physical requirements for a magnetoreceptor capable of rapidly detecting small changes in the external magnetic field. This would also explain interference of ac powerline magnetic fields with magnetoreception, as reported in cattle. PMID:22778440

  18. Compatibility of ITER candidate materials with static gallium

    International Nuclear Information System (INIS)

    Corrosion tests have been conducted to determine the compatibility of gallium with candidate structural materials for the International Thermonuclear Experimental Reactor (ITER) first wall/blanket systems, e.g., Type 316 stainless steel (SS), Inconel 625, and Nb-5 Mo-1 Zr. The results indicate that Type 316 SS is least resistant to corrosion in static gallium and Nb-5 Mo-1 Zr alloy is most resistant. At 400 C, corrosion rates for Type 316 SS, Inconel 625, and Nb-5 Mo-1 Zr alloy are ∼ 4.0, 0.5, and 0.03 mm/yr, respectively. Iron, nickel, and chromium react rapidly with gallium. Iron shows greater corrosion than nickel at 400 C (≥ 88 and 18 mm/yr, respectively). The present study indicates that at temperatures up to 400 C, corrosion occurs primarily by dissolution and is accompanied by formation of metal/gallium intermetallic compounds. The growth of intermetallic compounds may control the overall rate of corrosion

  19. Corrosion of candidate container materials by Yucca Mountain bacteria

    International Nuclear Information System (INIS)

    Several candidate container materials have been studied in modified Yucca Mountain (YM) ground water in the presence or absence of YM bacteria. YM bacteria increased corrosion rates by 5-6 fold in UNS G10200 carbon steel, and nearly 100-fold in UNS NO4400 Ni-Cu alloy. YM bacteria caused microbiologically influenced corrosion (MIC) through de-alloying or Ni-depletion of Ni-Cu alloy as evidenced by scanning electronic microscopy (SEM) and inductively coupled plasma spectroscopy (ICP) analysis. MIC rates of more corrosion-resistant alloys such as UNS NO6022 Ni-Cr- MO-W alloy, UN's NO6625 Ni-Cr-Mo alloy, and UNS S30400 stainless steel were measured below 0.05 umyr, however YM bacteria affected depletion of Cr and Fe relative to Ni in these materials. The chemical change on the metal surface caused by depletion was characterized in anodic polarization behavior. The anodic polarization behavior of depleted Ni-based alloys was similar to that of pure Ni. Key words: MIC, container materials, YM bacteria, de-alloying, Ni-depletion, Cr-depletion, polarization resistance, anodic polarization,

  20. Extreme BL Lacs: probes for cosmology and UHECR candidates

    CERN Document Server

    Tavecchio, F

    2015-01-01

    High-energy observations of extreme BL Lac objects, such as 1ES0229+200 or 1ES 0347-121, recently focused interest both for blazar and jet physics and for the implication on the extragalactic background light and intergalactic magnetic field estimate. Moreover, their enigmatic properties have been interpreted in a scenario in which their primary high- energy output is through a beam of high-energy hadrons. However, despite their possible important role in all these topics, the number of these extreme highly peaked BL Lac objects (EHBL) is still rather small. Aiming at increase their number, we selected a group of EHBL candidates considering those undetected (or only barely detected) by the LAT onboard Fermi and characterized by a high X-ray versus radio flux ratio. We assembled the multi-wavelength spectral energy distribution of the resulting 9 sources, using available archival data of Swift, GALEX, and Fermi satellites, confirming their nature. Through a simple one-zone synchrotron self-Compton model we est...

  1. Compatibility of ITER candidate structural materials with static gallium

    International Nuclear Information System (INIS)

    Tests were conducted on the compatibility of gallium with candidate structural materials for the International Thermonuclear Experimental Reactor, e.g., Type 316 SS, Inconel 625, and Nb-5 Mo-1 Zr alloy, as well as Armco iron, Nickel 270, and pure chromium. Type 316 stainless steel is least resistant to corrosion in static gallium and Nb-5 Mo-1 Zr alloy is most resistant. At 400 degrees C, corrosion rates are ∼4.0, 0.5, and 0.03 mm/yr for type 316 SS, Inconel 625, and Nb-5 Mo- 1 Zr alloy, respectively. The pure metals react rapidly with gallium. In contrast to findings in earlier studies, pure iron shows greater corrosion than nickel. The corrosion rates at 400 degrees C are ≥88 and 18 mm/yr, respectively, for Armco iron and Nickel 270. The results indicate that at temperatures up to 400 degrees C, corrosion occurs primarily by dissolution and is accompanied by formation of metal/gallium intermetallic compounds. The solubility data for pure metals and oxygen in gallium are reviewed. The physical, chemical, and radioactive properties of gallium are also presented. The supply and availability of gallium, as well as price predictions through the year 2020, are summarized

  2. Candidate glutamatergic neurons in the visual system of Drosophila.

    Directory of Open Access Journals (Sweden)

    Shamprasad Varija Raghu

    Full Text Available The visual system of Drosophila contains approximately 60,000 neurons that are organized in parallel, retinotopically arranged columns. A large number of these neurons have been characterized in great anatomical detail. However, studies providing direct evidence for synaptic signaling and the neurotransmitter used by individual neurons are relatively sparse. Here we present a first layout of neurons in the Drosophila visual system that likely release glutamate as their major neurotransmitter. We identified 33 different types of neurons of the lamina, medulla, lobula and lobula plate. Based on the previous Golgi-staining analysis, the identified neurons are further classified into 16 major subgroups representing lamina monopolar (L, transmedullary (Tm, transmedullary Y (TmY, Y, medulla intrinsic (Mi, Mt, Pm, Dm, Mi Am, bushy T (T, translobula plate (Tlp, lobula intrinsic (Lcn, Lt, Li, lobula plate tangential (LPTCs and lobula plate intrinsic (LPi cell types. In addition, we found 11 cell types that were not described by the previous Golgi analysis. This classification of candidate glutamatergic neurons fosters the future neurogenetic dissection of information processing in circuits of the fly visual system.

  3. Identification of Candidate Millisecond Pulsars from Fermi LAT Observations

    CERN Document Server

    Dai, Xuejie; Jithesh, V; Xing, Yi

    2016-01-01

    We report our detailed data analysis for 39 $\\gamma$-ray sources selected from the 992 unassociated sources in the \\textit{Fermi} Large Area Telescope (LAT) third source catalog. The selection criteria, which were set for finding candidate millisecond pulsars (MSPs), are non-variables with curved spectra and $>$5$^{\\circ}$ Galactic latitudes. From our analysis, 24 sources were found to be point-like sources not contaminated by background or nearby unknown sources. Three of them, J1544.6$-$1125, J1625.1$-$0021, and J1653.6$-$0158, have been previously studied, indicating that they are likely MSPs. The spectra of J0318.1+0252 and J2053.9+2922 do not have properties similar to that of known $\\gamma$-ray MSPs, and we thus suggest that they are not MSPs. Analysis of archival X-ray data for most of the 24 sources were also conducted. Four sources were found with X-ray objects in their error circles, and 16 with no detection. The ratios between the $\\gamma$-ray fluxes and X-ray fluxes or flux upper limits are genera...

  4. Blazar candidates beyond redshift 4 observed with GROND

    CERN Document Server

    Sbarrato, T; Nardini, M; Tagliaferri, G; Greiner, J; Rau, A; Schady, P

    2013-01-01

    The search for extremely massive high redshift blazars is essential to put strong constraints on the supermassive black holes formation theories. Up to now, the few blazars known to have a redshift larger than 4 have been discovered serendipitously. We try a more systematic approach. Assuming radio-loudness as a proxy for the jet orientation, we select a sample of extremely radio-loud quasars. We measure their black hole masses with a method based on fitting the thermal emission from the accretion disc. We achieve a precision of a factor of two for our measures, thanks to the observations performed with the Gamma-Ray Burst Optical Near-Infrared Detector (GROND). The infrared to optical GROND data allow us to observe directly the peak of the disc emission, thus constraining the overall disc luminosity. We obtain a small range of masses, that peaks at 10^{9.3}Msun. If some of our candidates will be confirmed as blazars, these results would introduce interesting constraints on the mass function of extremely mass...

  5. Pre-Spectroscopic False Positive Elimination of Kepler Planet Candidates

    CERN Document Server

    Batalha, N M; Gilliland, R L; Jenkins, J J; Caldwell, D A; Borucki, W J; Koch, D G; Lissauer, J J; Dunham, E W; Gautier, T N; Howell, S B; Latham, D W; Marcy, G W; Prsa, A

    2010-01-01

    Ten days of commissioning data (Quarter 0) and thirty-three days of science data (Quarter 1) yield instrumental flux timeseries of ~150,000 stars that were combed for transit events, termed Threshold Crossing Events (TCE), each having a total detection statistic above 7.1-sigma. TCE light curves are modeled as star+planet systems. Those returning a companion radius smaller than 2R_J are assigned a KOI (Kepler Object of Interest) number. The raw flux, pixel flux, and flux-weighted centroids of every KOI are scrutinized to assess the likelihood of being an astrophysical false-positive versus the likelihood of a being a planetary companion. This vetting using Kepler data is referred to as data validation. Herein, we describe the data validation metrics and graphics used to identify viable planet candidates amongst the KOIs. Light curve modeling tests for a) the difference in depth of the odd- versus even-numbered transits, b) evidence of ellipsoidal variations, and c) evidence of a secondary eclipse event at pha...

  6. Integrating subpathway analysis to identify candidate agents for hepatocellular carcinoma.

    Science.gov (United States)

    Wang, Jiye; Li, Mi; Wang, Yun; Liu, Xiaoping

    2016-01-01

    Hepatocellular carcinoma (HCC) is the second most common cause of cancer-associated death worldwide, characterized by a high invasiveness and resistance to normal anticancer treatments. The need to develop new therapeutic agents for HCC is urgent. Here, we developed a bioinformatics method to identify potential novel drugs for HCC by integrating HCC-related and drug-affected subpathways. By using the RNA-seq data from the TCGA (The Cancer Genome Atlas) database, we first identified 1,763 differentially expressed genes between HCC and normal samples. Next, we identified 104 significant HCC-related subpathways. We also identified the subpathways associated with small molecular drugs in the CMap database. Finally, by integrating HCC-related and drug-affected subpathways, we identified 40 novel small molecular drugs capable of targeting these HCC-involved subpathways. In addition to previously reported agents (ie, calmidazolium), our method also identified potentially novel agents for targeting HCC. We experimentally verified that one of these novel agents, prenylamine, induced HCC cell apoptosis using 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide, an acridine orange/ethidium bromide stain, and electron microscopy. In addition, we found that prenylamine not only affected several classic apoptosis-related proteins, including Bax, Bcl-2, and cytochrome c, but also increased caspase-3 activity. These candidate small molecular drugs identified by us may provide insights into novel therapeutic approaches for HCC. PMID:27022281

  7. The companion candidate near Fomalhaut - a background neutron star?

    CERN Document Server

    Neuhaeuser, Ralph; Ginski, Christian; Schmidt, Janos; Hambaryan, Valeri; Schmidt, Tobias

    2015-01-01

    The directly detected planetary mass companion candidate close to the young, nearby star Fomalhaut is a subject of intense discussion. While the detection of common proper motion led to the interpretation as Jovian-mass companion, later non-detections in the infrared raised doubts. Recent astrometric measurements indicate a belt crossing or highly eccentric orbit for the object, if a companion, making the planetary interpretation potentially even more problematic. In this study we discuss the possibility of Fomalhaut\\,b being a background object with a high proper motion. By analysing the available photometric and astrometric data of the object, we show that they are fully consistent with a neutron star: Neutron stars are faint, hot (blue), and fast moving. Neutron stars with an effective temperature of the whole surface area being 112,000 K to 126,500 K (with small to negligible extinction) at a distance of roughly 11 pc (best fit) would be consistent with all observables, namely with the photometric detecti...

  8. Investigation of two candidate genes for Hailey-Hailey disease

    Energy Technology Data Exchange (ETDEWEB)

    Peluso, A.M.; Ikeda, S.; Bonifas, J.M. [Univ. of California, San Francisco, CA (United States)] [and others

    1994-09-01

    Hailey-Hailey disease (familial benign chronic pemphigus) is an autosomal dominant skin disease characterized by impaired keratinocyte cohesion and consequent blister formation. Recently we have used linkage to map the gene for this disease to a region of chromosome 3q between D3S1589 and D3S1316. The maximum combined two point lod score in four families studied was 14.60 at {theta} = 0 at the D3S1290 microsatellite repeat. Several genes have been mapped to chromosome 3q21-24, including cellular retinol binding protein (RBP1) and rhodopsin (RHO). Using microsatellite repeat for RHO we have found a recombinant with the RHO gene and Hailey-Hailey disease in one patient. Because of the profound effects of retinoids on epidermal differentiation, RBP1 could be considered as a possible candidate gene. We have amplified genomic DNA from patients from 14 individual families with Hailey-Hailey disease and 10 different control samples for each of the 4 exons of RBP1. Thus far, SSCP analysis has failed to detect different banding patterns in patients versus controls. We are now attempting to extend this RBP1 analysis and are collecting new families to use linkage analysis to narrow this still rather large (approximately 14 cM) interval.

  9. Romania becomes a candidate for accession to CERN

    CERN Multimedia

    CERN Bulletin

    2010-01-01

    Romanian Minister Daniel Petru Funeriu, and CERN Director-General Rolf Heuer. On Thursday 11 February Romanian Minister of Education, Research, Youth and Sport, Daniel Petru Funeriu, and CERN Director-General, Rolf Heuer, signed an agreement that formally recognises Romania as a Candidate for Accession to membership of CERN. Romania’s pre-membership will cover a five-year period during which the country’s contributions will ramp up to normal Member State levels, in parallel with Romania's participation in CERN projects. At the end of this five-year period the Council will decide on Romania's application for full membership, as the Organization's 21st Member State. Romania entered into direct collaboration with CERN in the early 1990s. In recent years Romania has been constantly increasing its expenditure on R&D and this has been intensified since the country's accession to the EU in January 2007. Romania is involved in three LHC experiments, namely ATLAS, ALICE and LHCb . It al...

  10. MN112: a new Galactic candidate Luminous Blue Variable

    CERN Document Server

    Gvaramadze, V V; Fabrika, S; Sholukhova, O; Berdnikov, L N; Cherepashchuk, A M; Zharova, A V

    2009-01-01

    We report the discovery of a new Galactic candidate Luminous Blue Variable (cLBV) via detection of an infrared circular nebula and follow-up spectroscopy of its central star. The nebula, MN112, is one of many dozens of circular nebulae detected at 24 $\\mu$m the Spitzer Space Telescope archival data, whose morphology is similar to that of nebulae associated with known (c)LBVs and related evolved massive stars. Specifically, the core-halo morphology of MN112 bears a striking resemblance to the circumstellar nebula associated with the Galactic cLBV GAL 079.29+00.46, which suggests that both nebulae might have a similar origin and that the central star of MN112 is a LBV. The spectroscopy of the central star showed that its spectrum is almost identical to that of the bona fide LBV P Cygni, which also supports the LBV classification of the object. To further constrain the nature of MN112, we searched for signatures of possible high-amplitude ($\\ga 1$ mag) photometric variability of the central star using archival a...

  11. Identification of Novel Vaccine Candidates against Campylobacter through Reverse Vaccinology.

    Science.gov (United States)

    Meunier, Marine; Guyard-Nicodème, Muriel; Hirchaud, Edouard; Parra, Alberto; Chemaly, Marianne; Dory, Daniel

    2016-01-01

    Campylobacteriosis is the most prevalent bacterial foodborne gastroenteritis affecting humans in the European Union. Human cases are mainly due to Campylobacter jejuni or Campylobacter coli, and contamination is associated with the handling and/or consumption of poultry meat. In fact, poultry constitutes the bacteria's main reservoir. A promising way of decreasing the incidence of campylobacteriosis in humans would be to decrease avian colonization. Poultry vaccination is of potential for this purpose. However, despite many studies, there is currently no vaccine available on the market to reduce the intestinal Campylobacter load in chickens. It is essential to identify and characterize new vaccine antigens. This study applied the reverse vaccinology approach to detect new vaccine candidates. The main criteria used to select immune proteins were localization, antigenicity, and number of B-epitopes. Fourteen proteins were identified as potential vaccine antigens. In vitro and in vivo experiments now need to be performed to validate the immune and protective power of these newly identified antigens. PMID:27413761

  12. Factors influencing Turkish teacher candidates' elective course preferences

    Directory of Open Access Journals (Sweden)

    Duygu Uçgun

    2012-10-01

    Full Text Available By the Academic Year of 2006-2007, new curriculum has been begun to be applied in the Faculties of Education. When it is evaluated in terms of Turkish Language Teacher Training Departments, it is seen that the most attractive changes are the abolition of Side Branch application, the increase in the number of the courses which will contribute to teacher candidates’ profession and the enrichment in the content. In the curriculum are 5 elective courses beside necessary ones. The aim of this study is to determine what and how much effects the Turkish Language Teacher Candidates as they decide on the courses mentioned above. In the study, based on scanning method, of which subject is consists of 2nd, 3rd and 4th year students from Turkish Language Teacher Training Department, The Faculty of Education of Nigde University Likert-type Scale with four grades which was improved by Tezcan and Gumus (2008 has been used as data collection tool. According to the finding acquired from the study the factors effecting Turkish Language Teacher Candidates’ preferences about elective courses have been determined and ideas which are going to contribute to determination of elective courses and effective process of them have been suggested.

  13. Models with radiative neutrino masses and viable dark matter candidates

    CERN Document Server

    Restrepo, Diego; Yaguna, Carlos

    2013-01-01

    We provide a list of particle physics models at the TeV-scale that are compatible with neutrino masses and dark matter. In these models, the Standard Model particle content is extended with a small number (\\leq 4) of scalar and fermion fields transforming as singlets, doublets or triplets under SU(2), and neutrino masses are generated radiatively via 1-loop diagrams. The dark matter candidates are stabilized by a Z_2 symmetry and are in general mixtures of the neutral components of such new multiplets. We describe the particle content of each of these models and determine the conditions under which they are consistent with current data. We find a total of 35 viable models, most of which have not been previously studied in the literature. There is a great potential to test these models at the LHC not only due to the TeV-scale masses of the new fields but also because about half of the viable models contain particles with exotic electric charges, which give rise to background-free signals. Our results should se...

  14. Afterpulse measurement for 8-inch candidate PMTs for LHAASO

    Science.gov (United States)

    Zhao, X.; Tang, Z.; Li, C.; Chen, H.; Zhang, Y.; Li, X.; Shao, M.; Sun, Y.; Zha, W.; Zhou, Y.

    2016-05-01

    An afterpulse occurs within a short time after the main pulse and cannot be directly distinguished from the true physical signals. In cosmic ray experiments, a large number of photomultiplier tubes (PMTs) are used, which means the occurrence of afterpulses leads to a significant background. Therefore, before PMTs are employed, their afterpulse characteristics need to be evaluated to make sure they perform as expected. To evaluate the impact of afterpulses, we investigate the afterpulses for the Hamamatsu PMT R5912 (a candidate of the WCDA and MD for LHAASO) using two different electronic testing systems. First, we measured the characteristics of afterpulses in detail using a frequency-tunable flash analog-to-digital converter (ADC) with a time window of up to 15 μ s after a laser signal. We measured the time delay with respect to the main pulse, the amplitude, and the rate of the afterpulse dependence, on the main signal amplitude and the applied high voltage. Second, we developed a system that uses a multi-hit time-to-digital converter (multi-hit TDC), which allows for much faster measurement of the afterpulse rates, in order to make it possible to test up to 5000 large-sized PMTs.

  15. Structure and kinematics of candidate double-barred galaxies

    CERN Document Server

    Moiseev, A V; Chavushyan, V H

    2003-01-01

    Results of optical and NIR spectral and photometric observations of a sample of candidate double-barred galaxies are presented. Velocity fields and velocity dispersion maps of stars and ionized gas, continuum and emission-line images were constructed from integral-field spectroscopy observations carried out at the 6m telescope (BTA) of SAO RAS, with the MPFS spectrograph and the scanning Fabry-Perot Interferometer. NGC2681 was also observed with long-slit spectrograph of the BTA. Optical and NIR images were obtained at the BTA and at the 2.1m telescope (OAN, M\\'exico). High-resolution images were retrieved from the HST data archive. Morphological and kinematic features of all 13 sample objects are described in detail. Attention is focused on the interpretation of observed non-circular motions of gas and stars in circumnuclear (one kiloparsec- scale) regions. We have shown first of all that these motions are caused by a gravitational potential of large-scale bar. NGC3368 and NGC3786 have nuclear bars only, the...

  16. Humid air corrosion of YMP waste package candidate material

    Energy Technology Data Exchange (ETDEWEB)

    Gdowski, G.E.

    1998-01-01

    The Yucca Mountain Site Characterization Project is evaluating candidate materials for high level nuclear waste containers (Waste Packages) for a potential deep geologic repository at Yucca Mountain, Nevada. The potential repository is located above the water table in the unsaturated zone. The rock contains nominally 10% by volume water and gas pressure in the emplacement drifts of the repository is expected to remain near the ambient atmospheric pressure. The heat generated by the radioactive decay of the waste will raise the temperature of the waste packages and the surrounding rock. Waste Package temperatures above the ambient boiling point of water are anticipated for the waste emplacement scenarios. Because the repository emplacement drifts are expected to remain at the ambient atmospheric pressure, the maximum relative humidity obtainable decreases above the boiling point of water. Temperatures of the Waste Packages and the surrounding rock are expected to reach maximum temperature within 100`s of years and then gradually decrease with time. Episodic liquid water contact with the WPs is also expected; this will result in the deposition of salts and mineral scale.

  17. Tracing back the evolution of the candidate LBV HD168625

    CERN Document Server

    Mahy, L; Royer, P; Waelkens, C

    2016-01-01

    Aims. We obtained Herschel/PACS imaging and spectroscopic observations of the nebula surrounding the candidate LBV HD168625. By combining these data with optical spectra of the star, we want to constrain the abundances in the nebula and in the star and compare them to trace back its evolution. Methods. We use CMFGEN to determine the fundamental parameters and the CNO abundances of the central star whilst the abundances of the nebula are derived from the emission lines present in the Herschel/PACS spectrum. Result. The FIR images show a nebula composed of an elliptical ring/torus of ejecta with a ESE-WNW axis and of a second perpendicular bipolar structure composed of empty caps/rings. We detect equatorial shells composed of dust and ionized material with different sizes when observed at different wavelengths, and bipolar caps more of less separated from the central star in H$\\alpha$ and mid-IR images. This complex global structure seems to show 2 different inclinations: 40{\\deg} for the equatorial torus and 6...

  18. Identification of Schistosoma mansoni candidate antigens for diagnosis of schistosomiasis

    Directory of Open Access Journals (Sweden)

    Gardenia Braz Figueiredo Carvalho

    2011-11-01

    Full Text Available The development of a more sensitive diagnostic test for schistosomiasis is needed to overcome the limitations of the use of stool examination in low endemic areas. Using parasite antigens in enzyme linked immunosorbent assay is a promising strategy, however a more rational selection of parasite antigens is necessary. In this study we performed in silico analysis of the Schistosoma mansoni genome, using SchistoDB database and bioinformatic tools for screening immunogenic antigens. Based on evidence of expression in all parasite life stage within the definitive host, extracellular or plasmatic membrane localization, low similarity to human and other helminthic proteins and presence of predicted B cell epitopes, six candidates were selected: a glycosylphosphatidylinositol-anchored 200 kDa protein, two putative cytochrome oxidase subunits, two expressed proteins and one hypothetical protein. The recognition in unidimensional and bidimensional Western blot of protein with similar molecular weight and isoelectric point to the selected antigens by sera from S. mansoni infected mice indicate a good correlation between these two approaches in selecting immunogenic proteins.

  19. PLANET HUNTERS: NEW KEPLER PLANET CANDIDATES FROM ANALYSIS OF QUARTER 2

    International Nuclear Information System (INIS)

    We present new planet candidates identified in NASA Kepler Quarter 2 public release data by volunteers engaged in the Planet Hunters citizen science project. The two candidates presented here survive checks for false positives, including examination of the pixel offset to constrain the possibility of a background eclipsing binary. The orbital periods of the planet candidates are 97.46 days (KIC 4552729) and 284.03 (KIC 10005758) days and the modeled planet radii are 5.3 and 3.8 R⊕. The latter star has an additional known planet candidate with a radius of 5.05 R⊕ and a period of 134.49 days, which was detected by the Kepler pipeline. The discovery of these candidates illustrates the value of massively distributed volunteer review of the Kepler database to recover candidates which were otherwise uncataloged.

  20. PLANET HUNTERS: NEW KEPLER PLANET CANDIDATES FROM ANALYSIS OF QUARTER 2

    Energy Technology Data Exchange (ETDEWEB)

    Lintott, Chris J. [Oxford Astrophysics, Denys Wilkinson Building, Keble Road, Oxford OX1 3RH (United Kingdom); Schwamb, Megan E.; Schwainski, Kevin, E-mail: cjl@astro.ox.ac.uk [Department of Physics, Yale University, P.O. Box 208121, New Haven, CT 06520 (United States); and others

    2013-06-15

    We present new planet candidates identified in NASA Kepler Quarter 2 public release data by volunteers engaged in the Planet Hunters citizen science project. The two candidates presented here survive checks for false positives, including examination of the pixel offset to constrain the possibility of a background eclipsing binary. The orbital periods of the planet candidates are 97.46 days (KIC 4552729) and 284.03 (KIC 10005758) days and the modeled planet radii are 5.3 and 3.8 R{sub Circled-Plus }. The latter star has an additional known planet candidate with a radius of 5.05 R{sub Circled-Plus} and a period of 134.49 days, which was detected by the Kepler pipeline. The discovery of these candidates illustrates the value of massively distributed volunteer review of the Kepler database to recover candidates which were otherwise uncataloged.

  1. Planck early results. IX. XMM-Newton follow-up for validation of Planck cluster candidates

    DEFF Research Database (Denmark)

    Bucher, M.; Delabrouille, J.; Giraud-Héraud, Y.; Le Jeune, M.; Patanchon, G.; Piat, M.; Rosset, C.; Carvalho, P.; Hobson, M.; Stolyarov, V.; Bhatia, R.; Bond, J.R.; Da Silva, A.; Melin, J.-B.; Yvon, D.; Linden-Vørnle, Michael; Nørgaard-Nielsen, Hans Ulrik; Toffolatti, L.; Marleau, F.; Netterfield, C.B.; Scott, D.; Pierpaoli, E.; Liddle, A.; Juvela, M.; Keihänen, E.; Cayón, L.; Knox, L.; Lubin, P.M.; Zonca, A.; Matarrese, S.; De Bernardis, P.; Masi, S.; Melchiorri, A.; Piacentini, F.; Gregorio, A.; Balbi, A.; Cabella, P.; De Gasperis, G.; Mazzotta, P.; Vittorio, N.; Kneissl, R.; González-Riestra, R.; Dupac, X.; Mendes, L.; Giardino, G.; Laureijs, R.J.; Leonardi, R.; Tauber, J.A.; Kurki-Suonio, H.; Poutanen, T.; Bonaldi, A.; Colafrancesco, S.; Polenta, G.; Frailis, M.; Galeotta, S.; Maris, M.; Mennella, A.; Pasian, F.; Zacchei, A.; Burigana, C.; Cuttaia, F.; De Rosa, A.; Finelli, F.; Franceschi, E.; Gruppuso, A.; Mandolesi, N.; Morgante, G.; Natoli, P.; Ricciardi, S.; Sandri, M.; Terenzi, L.; Valenziano, L.; Villa, F.; Bersanelli, M.; Maino, D.; Tomasi, M.; Stivoli, F.; Désert, F.-X.; Chamballu, A.; Clements, D.L.; Jaffe, A.H.; Mortlock, D.; Novikov, D.; Ganga, K.; Rusholme, B.; Benoît, A.; Aghanim, N.; Aumont, J.; Douspis, M.; Fromenteau, S.; Lagache, G.; Miville-Deschênes, M.-A.; Noviello, F.; Pajot, F.; Ponthieu, N.; Puget, J.-L.; Torre, J.-P.; Vibert, L.; Benabed, K.; Bouchet, F.R.; Colombi, S.; Delouis, J.-M.; Hivon, E.; Moneti, A.; Prunet, S.; Sygnet, J.-F.; Wandelt, B.D.; Chiang, L.-Y.; Efstathiou, G.; Dahle, H.; Donzelli, S.; Flores-Cacho, I.; Génova-Santos, R.T.; Hoyland, R.J.; Rebolo, R.; Rubiño-Martín, J.A.; Barreiro, R.B.; Diego, J.M.; Herranz, D.; López-Caniego, M.; Martínez-González, E.; Vielva, P.; Bartlett, J.G.; Bock, J.J.; Doré, O.; Holmes, W.A.; Keskitalo, R.; Lawrence, C.R.; Mitra, S.; Prézeau, G.; Rocha, G.; Seiffert, M.D.; Maffei, B.; Ashdown, M.; Brown, M.L.; Challinor, A.; Gratton, S.; Harrison, D.; Lasenby, A.; Catalano, A.; Coulais, A.; Lamarre, J.-M.; Arnaud, M.; Piffaretti, R.; Pratt, G.W.; Starck, J.-L.; Cardoso, J.-F.; Hildebrandt, S.R.; Hurier, G.; MacÍas-Pérez, J.F.; Perotto, L.; Renault, C.; Santos, D.; Couchot, F.; Henrot-Versillé, S.; Perdereau, O.; Plaszczynski, S.; Tristram, M.; Cantalupo, C.M.; Kisner, T.S.; Smoot, G.F.; Dolag, K.; Dörl, U.; Enßlin, T.A.; Hernández-Monteagudo, C.; Hovest, W.; Matthai, F.; Reinecke, M.; Riller, T.; White, S.D.M.; Chon, G.; Tuovinen, J.; Murphy, A.; Christensen, P.R.; Naselsky, P.; Novikov, I.; Crill, B.P.; Baccigalupi, C.; Danese, L.; De Zotti, G.; González-Nuevo, J.; Leach, S.; Perrotta, F.; Mann, R.; Munshi, D.; Churazov, E.; Sunyaev, R.; Borrill, J.; Osborne, S.; Saar, E.; Heinämäki, P.; Bartelmann, M.; Schaefer, B.M.; Banday, A.J.; Bernard, J.-P.; Forni, O.; Giard, M.; Montier, L.; Pointecouteau, E.; Ristorcelli, I.; Battaner, E.; Huffenberger, K.M.; Górski, K.M.

    2011-01-01

    We present the XMM-Newton follow-up for confirmation of Planck cluster candidates. Twenty-five candidates have been observed to date using snapshot (∼10 ks) exposures, ten as part of a pilot programme to sample a low range of signal-to-noise ratios (4 5 candidates. The sensitivity and spatial resolution of XMM-Newton allows unambiguous discrimination between clusters and false candidates. The 4 false candidates have S/N = 4.1. A total of 21 candidates are confirmed as extended X-ray sources. Seventeen are single clusters, the...

  2. Candidate Smoke Region Segmentation of Fire Video Based on Rough Set Theory

    OpenAIRE

    Yaqin Zhao

    2015-01-01

    Candidate smoke region segmentation is the key link of smoke video detection; an effective and prompt method of candidate smoke region segmentation plays a significant role in a smoke recognition system. However, the interference of heavy fog and smoke-color moving objects greatly degrades the recognition accuracy. In this paper, a novel method of candidate smoke region segmentation based on rough set theory is presented. First, Kalman filtering is used to update video background in order to ...

  3. Coronary artery disease in lung transplant candidates: role of routine invasive assessment

    OpenAIRE

    Wild, Johannes; Arrigo, Mattia; Isenring, Bruno Dieter; Buergi, Urs; Kurowski, Thomas; Schuurmans, Macé M.; Huber, Lars C; Benden, Christian

    2015-01-01

    BACKGROUND: An atherosclerotic disease burden sufficient to put lung transplant candidates at risk for end-organ disease after transplantation is considered to be a relative contraindication for lung transplantation. OBJECTIVES: The aim of this study was to assess our current practice of cardiac workup by coronary angiography in lung transplant candidates ≥50 years of age. METHODS: We retrospectively analyzed 50 consecutive lung transplant candidates ≥50 years of age in which coronary a...

  4. Examining Computer Self Efficacy Beliefs of Teacher Candidates: Turkish Republic of Northern Cyprus Case

    OpenAIRE

    Özder, Hasan; KONEDRALI, Güner; SABANCIGİL, Pembe

    2010-01-01

    The aim of this study was to determine the relationships among the computer self efficacy beliefs introduction to computer course scores and academic achievements of teacher candidates enrolled in Atatürk Teacher?s Academy during 2007 08 academic years 143 teacher candidates participated in the study Computer self efficacy beliefs of the teacher candidates in this study were measured by a scale developed by Aşkar and Umay 2001 The academic achievement and introduction to computer course...

  5. Analysis of dyslexia candidate genes in the Raine cohort representing the general Australian population

    OpenAIRE

    Paracchini, S; Ang, Q W; Stanley, F J; Monaco, A. P.; Pennell, C E; Whitehouse, A J O

    2011-01-01

    Several genes have been suggested as dyslexia candidates. Some of these candidate genes have been recently shown to be associated with literacy measures in sample cohorts derived from the general population. Here, we have conducted an association study in a novel sample derived from the Australian population (the Raine cohort) to further investigate the role of dyslexia candidate genes. We analysed markers, previously reported to be associated with dyslexia, located within the MRPL19/C2ORF3, ...

  6. 150 New transiting planet candidates from Kepler Q1-Q6 data

    OpenAIRE

    Huang, Xu; Bakos, Gáspár Á.; Hartman, Joel D.

    2012-01-01

    We have performed an extensive search for planet candidates in the publicly available Kepler Long Cadence data from quarters Q1 through Q6. The search method consists of initial de-trending of the data, applying the trend filtering algorithm, searching for transit signals with the Box Least Squares fitting method in three frequency domains, visual inspection of the potential transit candidates, and in-depth analysis of the shortlisted candidates. In this paper we present 150 new periodic plan...

  7. Indicators of Psychical Stability Among Junior and Youth Track and Field National Team Candidates

    OpenAIRE

    Romualdas K. Malinauskas

    2014-01-01

    This article deals with questions of psychical stability among junior and youth track and field national team candidates. Two methods were used to carry out the survey: The Competitive State Anxiety Inventory developed by Martens et al. and Athletes Psychical Stability Questionnaire developed by Milman. The random sample size consists of 81 junior and youth track and field national team candidates. Participants comprised 39 youth teams and 42 junior national team candidates. It was determined...

  8. Database of cattle candidate genes and genetic markers for milk production and mastitis

    OpenAIRE

    Ogorevc, J; Kunej, T; Razpet, A; Dovc, P

    2009-01-01

    A cattle database of candidate genes and genetic markers for milk production and mastitis has been developed to provide an integrated research tool incorporating different types of information supporting a genomic approach to study lactation, udder development and health. The database contains 943 genes and genetic markers involved in mammary gland development and function, representing candidates for further functional studies. The candidate loci were drawn on a genetic map to reveal positio...

  9. Diminishing Marginal Returns From Genomic Selection As More Selection Candidates Are Phenotyped

    DEFF Research Database (Denmark)

    Okeno, Tobias O; Henryon, Mark; Sørensen, Anders Christian

    as more candidates are phenotyped in genomic breeding programs. Three phenotyping criteria, namely, random (RS), EBV and true breeding value (TBV) were investigated under two schemes (across-population and within-litter) using traditional-BLUP and genomic-BLUP models. The EBV ranked above RS and realized...... maximum achievable gains in the breeding program at 80% phenotyping. There was diminishing return to selection as more candidates were phenotyped; indicating that information content is not so large in the last candidate compared to the first candidate phenotyped. These findings demonstrate the need...

  10. Indicators of Psychical Stability Among Junior and Youth Track and Field National Team Candidates

    Directory of Open Access Journals (Sweden)

    Romualdas K. Malinauskas

    2014-03-01

    Full Text Available This article deals with questions of psychical stability among junior and youth track and field national team candidates. Two methods were used to carry out the survey: The Competitive State Anxiety Inventory developed by Martens et al. and Athletes Psychical Stability Questionnaire developed by Milman. The random sample size consists of 81 junior and youth track and field national team candidates. Participants comprised 39 youth teams and 42 junior national team candidates. It was determined that, in comparison with the junior track and field national team candidates, anxiety of youth track and field national team candidates is lower (p<0.05. The psychical stability of youth track and field national team candidates, were found to be significantly higher than those of junior track and field national team candidates because it was found that youth track and field national team candidates scored higher (p <.05 than junior track and field national team candidates in following components of psychical stability: in precompetitive emotional stability and in self-regulation.

  11. Analysis of swing voter in the Indonesian election of 2014 presidential candidates using Twitter data

    Science.gov (United States)

    Alfarisy, Muhammad Salman; Putra, Rizki M.; Liong, The Houw; Purqon, Acep

    2015-09-01

    Ahead of the 2014 elections would be interesting to predict which candidate will hold the highest authority in the Republic of Indonesia. Entering the 2014 presidential election there is no infidelity tendency of voters who initially settled on a party or a candidate then choose another party or candidate in the next election. Changes in the tendency to make the condition of society in a state that has not been to given the choice of a candidate is commonly called swing voters. On this occasion, an examination of the swing voters who use social media twitter. By utilizing the advanced search facility to collect data from the response of tweeps (twitter users) on the twitter to Indonesian presidential candidate. The data will be used to describe how much the popularity of a candidate among tweeps, knowing the candidates who have the largest positive response and negative response, as well as the growing popularity of the candidate. The data is expected to predict the RI presidential candidate in 2014.

  12. Compendium of Total Ionizing Dose and Displacement Damage for Candidate Spacecraft Electronics for NASA

    Science.gov (United States)

    Cochran, Donna J.; Boutte, Alvin J.; Chen, Dakai; Pellish, Jonathan A.; Ladbury, Raymond L.; Casey, Megan C.; Campola, Michael J.; Wilcox, Edward P.; Obryan, Martha V.; LaBel, Kenneth A.; Lauenstein, Jean-Marie; Batchlor, David A.; Oldham, Timothy R.

    2012-01-01

    Vulnerability of a variety of candidate spacecraft electronics to total ionizing dose and displacement damage is studied. Devices tested include optoelectronics, digital, analog, linear, and hybrid devices.

  13. Improving initial polyp candidate extraction for CT colonography

    Science.gov (United States)

    Zhu, Hongbin; Fan, Yi; Lu, Hongbing; Liang, Zhengrong

    2010-04-01

    Reducing the number of false positives (FPs) as much as possible is a challenging task for computer-aided detection (CAD) of colonic polyps. As part of a typical CAD pipeline, an accurate and robust process for segmenting initial polyp candidates (IPCs) will significantly benefit the successive FP reduction procedures, such as feature-based classification of false and true positives (TPs). In this study, we introduce an improved scheme for segmenting IPCs. It consists of two main components. One is geodesic distance-based merging, which merges suspicious patches (SPs) for IPCs. Based on the merged SPs, another component, called convex dilation, grows each SP beyond the inner surface of the colon wall to form a volume of interest (VOI) for that IPC, so that the inner border of the VOI beyond the colon inner surface could be segmented as convex, as expected. The IPC segmentation strategy was evaluated using a database of 50 patient studies, which include 100 scans at supine and prone positions with 84 polyps and masses sized from 6 to 35 mm. The presented IPC segmentation strategy (or VOI extraction method) demonstrated improvements, in terms of having no undesirably merged true polyp and providing more helpful mean and variance of the image intensities rooted from the extracted VOI for classification of the TPs and FPs, over two other VOI extraction methods (i.e. the conventional method of Nappi and Yoshida (2003 Med. Phys. 30 1592-601) and our previous method (Zhu et al 2009 Cancer Manag. Res. 1 1-13). At a by-polyp sensitivity of 0.90, these three methods generated the FP rate (number of FPs per scan) of 4.78 (new method), 6.37 (Nappi) and 7.01 (Zhu) respectively.

  14. Conserved co-expression for candidate disease gene prioritization

    Directory of Open Access Journals (Sweden)

    Huynen Martijn A

    2008-04-01

    Full Text Available Abstract Background Genes that are co-expressed tend to be involved in the same biological process. However, co-expression is not a very reliable predictor of functional links between genes. The evolutionary conservation of co-expression between species can be used to predict protein function more reliably than co-expression in a single species. Here we examine whether co-expression across multiple species is also a better prioritizer of disease genes than is co-expression between human genes alone. Results We use co-expression data from yeast (S. cerevisiae, nematode worm (C. elegans, fruit fly (D. melanogaster, mouse and human and find that the use of evolutionary conservation can indeed improve the predictive value of co-expression. The effect that genes causing the same disease have higher co-expression than do other genes from their associated disease loci, is significantly enhanced when co-expression data are combined across evolutionarily distant species. We also find that performance can vary significantly depending on the co-expression datasets used, and just using more data does not necessarily lead to better prioritization. Instead, we find that dataset quality is more important than quantity, and using a consistent microarray platform per species leads to better performance than using more inclusive datasets pooled from various platforms. Conclusion We find that evolutionarily conserved gene co-expression prioritizes disease candidate genes better than human gene co-expression alone, and provide the integrated data as a new resource for disease gene prioritization tools.

  15. Stress corrosion cracking of candidate materials for nuclear waste containers

    International Nuclear Information System (INIS)

    Types 304L and 316L stainless steel (SS), Incoloy 825, Cu, Cu-30%Ni, and Cu-7%Al have been selected as candidate materials for the containment of high-level nuclear waste at the proposed Yucca Mountain Site in Nevada. The susceptibility of these materials to stress corrosion cracking has been investigated by slow-strain-rate tests (SSRTs) in water which simulates that from well J-13 (J-13 water) and is representative of the groundwater present at the Yucca Mountain site. The SSRTs were performed on specimens exposed to simulated J-13 water at 93 degree C and at a strain rate 10-7 s-1 under crevice conditions and at a strain rate of 10-8 s-1 under both crevice and noncrevice conditions. All the tests were interrupted after nominal elongation strains of 1--4%. Examination by scanning electron microscopy showed some crack initiation in virtually all specimens. Optical microscopy of metallographically prepared transverse sections of Type 304L SS suggests that the crack depths are small (<10 μm). Preliminary results suggest that a lower strain rate increases the severity of cracking of Types 304L and 316L SS, Incoloy 825, and Cu but has virtually no effect on Cu-30%Ni and Cu-7%Al. Differences in susceptibility to cracking were evaluated in terms of a stress ratio, which is defined as the ratio of the increase in stress after local yielding in the environment to the corresponding stress increase in an identical test in air, both computed at the same strain. On the basis of this stress ratio, the ranking of materials in order of increasing resistance to cracking is: Types 304L SS < 316L SS < Incoloy 825 congruent Cu-30%Ni < Cu congruent Cu-7%Al. 9 refs., 12 figs., 7 tabs

  16. In Silico screening for functional candidates amongst hypothetical proteins

    Directory of Open Access Journals (Sweden)

    Sanderhoff May

    2009-09-01

    Full Text Available Abstract Background The definition of a hypothetical protein is a protein that is predicted to be expressed from an open reading frame, but for which there is no experimental evidence of translation. Hypothetical proteins constitute a substantial fraction of proteomes of human as well as of other eukaryotes. With the general belief that the majority of hypothetical proteins are the product of pseudogenes, it is essential to have a tool with the ability of pinpointing the minority of hypothetical proteins with a high probability of being expressed. Results Here, we present an in silico selection strategy where eukaryotic hypothetical proteins are sorted according to two criteria that can be reliably identified in silico: the presence of subcellular targeting signals and presence of characterized protein domains. To validate the selection strategy we applied it on a database of human hypothetical proteins dating to 2006 and compared the proteins predicted to be expressed by our selecting strategy, with their status in 2008. For the comparison we focused on mitochondrial proteins, since considerable amounts of research have focused on this field in between 2006 and 2008. Therefore, many proteins, defined as hypothetical in 2006, have later been characterized as mitochondrial. Conclusion Among the total amount of human proteins hypothetical in 2006, 21% have later been experimentally characterized and 6% of those have been shown to have a role in a mitochondrial context. In contrast, among the selected hypothetical proteins from the 2006 dataset, predicted by our strategy to have a mitochondrial role, 53-62% have later been experimentally characterized, and 85% of these have actually been assigned a role in mitochondria by 2008. Therefore our in silico selection strategy can be used to select the most promising candidates for subsequent in vitro and in vivo analyses.

  17. Improving initial polyp candidate extraction for CT colonography

    International Nuclear Information System (INIS)

    Reducing the number of false positives (FPs) as much as possible is a challenging task for computer-aided detection (CAD) of colonic polyps. As part of a typical CAD pipeline, an accurate and robust process for segmenting initial polyp candidates (IPCs) will significantly benefit the successive FP reduction procedures, such as feature-based classification of false and true positives (TPs). In this study, we introduce an improved scheme for segmenting IPCs. It consists of two main components. One is geodesic distance-based merging, which merges suspicious patches (SPs) for IPCs. Based on the merged SPs, another component, called convex dilation, grows each SP beyond the inner surface of the colon wall to form a volume of interest (VOI) for that IPC, so that the inner border of the VOI beyond the colon inner surface could be segmented as convex, as expected. The IPC segmentation strategy was evaluated using a database of 50 patient studies, which include 100 scans at supine and prone positions with 84 polyps and masses sized from 6 to 35 mm. The presented IPC segmentation strategy (or VOI extraction method) demonstrated improvements, in terms of having no undesirably merged true polyp and providing more helpful mean and variance of the image intensities rooted from the extracted VOI for classification of the TPs and FPs, over two other VOI extraction methods (i.e. the conventional method of Nappi and Yoshida (2003 Med. Phys. 30 1592-601) and our previous method (Zhu et al 2009 Cancer Manag. Res. 1 1-13). At a by-polyp sensitivity of 0.90, these three methods generated the FP rate (number of FPs per scan) of 4.78 (new method), 6.37 (Nappi) and 7.01 (Zhu) respectively.

  18. Oral candidal species among smokers and non-smokers

    International Nuclear Information System (INIS)

    Objective: To determine the various oral Candidal species among healthy Malaysian adults. Design: Case-control study. Place and Duration of Study: This study was collaborated between the Department of Medical Microbiology, Faculty of Medicine and Department of Oral Pathology, Oral Medicine and Periodontology, Faculty of Dentistry, University of Malaysia, Kuala Lumpur, Malaysia, between September 2002 till January 2004. Patients and Methods: One hundred adults (50 smokers and 50 non-smokers), aged between 40 and 70 years were studied. Swabs and carbohydrate assimilation (Saboraud Dextrose Agar, Corn Meal Agar, API 20C AUX System) were performed. Specimens were collected from dorsum of the tongue, buccal mucosa and commissures (right and left each). Colony forms were established by positive colony forming units, on SDA medium (24-48 hours). Germ tube test for (true/pseudohyphae) growth was done on Corn Meal Agar Medium, candida biotypes were evaluated by API 20C AUX system, which had a numerical 7 digit profile, added to evaluate a definite candida species. Results: Thirty-five percent of Malaysian adults harbored Candida intraorally. Candida species identified among 100 subjects had C. albicans (27) 77%, C. glabrata (3) 8%, C. famata, C. tropicalis, C. krusei, C. lusitaniae and C. guillermondii (1) 3% each. Thirty-three positive cases comprised of 35 species i.e. two cases had two species each. Fifty-seven percent of these were smokers and 43% non-smokers. These included 40% Chinese, 36% Malays and 24% Indians. Species were, however, not specified according to intra-oral sites i.e. buccal, commissural mucosa and sorsum of tongue. Conclusion: On this series C. albicans is the most common specie found in the oral cavity of Malaysian adults. It is equally frequent in smokers and non-smokers, but showed a prediliection for the ethnic Chinese group. (author)

  19. Potential drug development candidates for human soil-transmitted helminthiases.

    Directory of Open Access Journals (Sweden)

    Piero Olliaro

    2011-06-01

    Full Text Available BACKGROUND: Few drugs are available for soil-transmitted helminthiasis (STH; the benzimidazoles albendazole and mebendazole are the only drugs being used for preventive chemotherapy as they can be given in one single dose with no weight adjustment. While generally safe and effective in reducing intensity of infection, they are contra-indicated in first-trimester pregnancy and have suboptimal efficacy against Trichuris trichiura. In addition, drug resistance is a threat. It is therefore important to find alternatives. METHODOLOGY: We searched the literature and the animal health marketed products and pipeline for potential drug development candidates. Recently registered veterinary products offer advantages in that they have undergone extensive and rigorous animal testing, thus reducing the risk, cost and time to approval for human trials. For selected compounds, we retrieved and summarised publicly available information (through US Freedom of Information (FoI statements, European Public Assessment Reports (EPAR and published literature. Concomitantly, we developed a target product profile (TPP against which the products were compared. PRINCIPAL FINDINGS: The paper summarizes the general findings including various classes of compounds, and more specific information on two veterinary anthelmintics (monepantel, emodepside and nitazoxanide, an antiprotozoal drug, compiled from the EMA EPAR and FDA registration files. CONCLUSIONS/SIGNIFICANCE: Few of the compounds already approved for use in human or animal medicine qualify for development track decision. Fast-tracking to approval for human studies may be possible for veterinary compounds like emodepside and monepantel, but additional information remains to be acquired before an informed decision can be made.

  20. A linkage study of candidate loci in familial Parkinson's Disease

    Directory of Open Access Journals (Sweden)

    Westerberg Lisa

    2003-07-01

    Full Text Available Abstract Background Parkinson's disease is the second most common neurodegenerative disorder after Alzheimer's disease. Most cases are sporadic, however familial cases do exist. We examined 12 families with familial Parkinson's disease ascertained at the Movement Disorder clinic at the Oregon Health Sciences University for genetic linkage to a number of candidate loci. These loci have been implicated in familial Parkinson's disease or in syndromes with a clinical presentation that overlaps with parkinsonism, as well as potentially in the pathogenesis of the disease. Methods The examined loci were PARK3, Parkin, DRD (dopa-responsive dystonia, FET1 (familial essential tremor, BDNF (brain-derived neurotrophic factor, GDNF (glial cell line-derived neurotrophic factor, Ret, DAT1 (the dopamine transporter, Nurr1 and Synphilin-1. Linkage to the α-synuclein gene and the Frontotemporal dementia with parkinsonism locus on chromosome 17 had previously been excluded in the families included in this study. Using Fastlink, Genehunter and Simwalk both parametric and model-free non-parametric linkage analyses were performed. Results In the multipoint parametric linkage analysis lod scores were below -2 for all loci except FET1 and Synphilin-1 under an autosomal dominant model with incomplete penetrance. Using non-parametric linkage analysis there was no evidence for linkage, although linkage could not be excluded. A few families showed positive parametric and non-parametric lod scores indicating possible genetic heterogeneity between families, although these scores did not reach any degree of statistical significance. Conclusions We conclude that in these families there was no evidence for linkage to any of the loci tested, although we were unable to exclude linkage with both parametric and non-parametric methods.

  1. Neuropsychological profile in a large group of heart transplant candidates.

    Directory of Open Access Journals (Sweden)

    Daniela Mapelli

    Full Text Available BACKGROUND: Recent studies have reported that patients with end-stage heart disease can have cognitive deficits ranging from mild to severe. Little is known, however, about the relationship between cognitive performance, neurophysiological characteristics and relevant clinical and instrumental indexes for an extensive evaluation of patients with heart failure, such as: left ventricular ejection fraction (LVEF and other haemodynamic measures, maximum oxygen uptake during cardiopulmonary exercise testing, comorbidities, major cardiovascular risk factors and disease duration. Our purpose was to outline the cognitive profiles of end-stage heart disease patients in order to identify the cognitive deficits that could compromise the quality of life and the therapeutic adherence in end-stage heart disease patients, and to identify the variables associated with an increased risk of cognitive deficits in these patients. METHODS: 207 patients with end-stage cardiac disease, candidates for heart transplant, were assessed by complete neuropsychological evaluation and by electroencephalographic recording with EEG spectral analysis. RESULTS: Pathological scores in one or more of the cognitive tests were obtained by 86% of the patients, while 36% performed within the impaired range on five or more tests, indicating poor performance across a broad range of cognitive domains. The executive functions were the cognitive domain most impaired (70%. Poor performances were not related to the aetiology of heart disease, but rather to cerebral dysfunction secondary to haemodynamic impairment and to comorbidities. CONCLUSIONS: Severe heart failure induces significant neurophysiological and neuropsychological alterations, which may produce an impairment of cognitive functioning and possibly compromise the quality of life of patients and the therapeutic adherence.

  2. Neutron irradiation behavior of ITER candidate beryllium grades

    Energy Technology Data Exchange (ETDEWEB)

    Kupriyanov, I.B.; Gorokhov, V.A.; Nikolaev, G.N. [A.A.Bochvar All-Russia Scientific Research Inst. of Inorganic Materials (VNIINM), Moscow (Russian Federation); Melder, R.R.; Ostrovsky, Z.E.

    1998-01-01

    Beryllium is one of the main candidate materials both for the neutron multiplier in a solid breeding blanket and for the plasma facing components. That is why its behaviour under the typical for fusion reactor loading, in particular, under the neutron irradiation is of a great importance. This paper presents mechanical properties, swelling and microstructure of six beryllium grades (DshG-200, TR-30, TshG-56, TRR, TE-30, TIP-30) fabricated by VNIINM, Russia and also one - (S-65) fabricated by Brush Wellman, USA. The average grain size of the beryllium grades varied from 8 to 25 {mu}m, beryllium oxide content was 0.8-3.2 wt. %, initial tensile strength was 250-680 MPa. All the samples were irradiated in active zone of SM-3 reactor up to the fast neutron fluence (5.5-6.2) {center_dot} 10{sup 21} cm{sup -2} (2.7-3.0 dpa, helium content up to 1150 appm), E > 0.1 MeV at two temperature ranges: T{sub 1} = 130-180degC and T{sub 2} = 650-700degC. After irradiation at 130-180degC no changes in samples dimensions were revealed. After irradiation at 650-700degC swelling of the materials was found to be in the range 0.1-2.1 %. Beryllium grades TR-30 and TRR, having the smallest grain size and highest beryllium oxide content, demonstrated minimal swelling, which was no more than 0.1 % at 650-700degC and fluence 5.5 {center_dot} 10{sup 21} cm{sup -2}. Tensile and compression test results and microstructure parameters measured before and after irradiation are also presented. (author)

  3. Photometric Selection of High-Redshift Type Ia Supernova Candidates

    Science.gov (United States)

    Sullivan, M.; Howell, D. A.; Perrett, K.; Nugent, P. E.; Astier, P.; Aubourg, E.; Balam, D.; Basa, S.; Carlberg, R. G.; Conley, A.; Fabbro, S.; Fouchez, D.; Guy, J.; Hook, I.; Lafoux, H.; Neill, J. D.; Pain, R.; Palanque-Delabrouille, N.; Pritchet, C. J.; Regnault, N.; Rich, J.; Taillet, R.; Aldering, G.; Baumont, S.; Bronder, J.; Filiol, M.; Knop, R. A.; Perlmutter, S.; Tao, C.

    2006-02-01

    We present a method for selecting high-redshift Type Ia supernovae (SNe Ia) located via rolling SN searches. The technique, using both color and magnitude information of events from only two to three epochs of multiband real-time photometry, is able to discriminate between SNe Ia and core-collapse SNe. Furthermore, for SNe Ia the method accurately predicts the redshift, phase, and light-curve parameterization of these events based only on pre-maximum-light data. We demonstrate the effectiveness of the technique on a simulated survey of SNe Ia and core-collapse SNe, where the selection method effectively rejects most core-collapse SNe while retaining SNe Ia. We also apply the selection code to real-time data acquired as part of the Canada-France-Hawaii Telescope Supernova Legacy Survey (SNLS). During the period 2004 May to 2005 January in the SNLS, 440 SN candidates were discovered, of which 70 were confirmed spectroscopically as SNe Ia and 15 as core-collapse events. For this test data set, the selection technique correctly identifies 100% of the identified SNe II as non-SNe Ia with only a 1%-2% false rejection rate. The predicted parameterization of the SNe Ia has a precision of Δz/(1+zspec)<0.09 in redshift and +/-2-3 rest-frame days in phase, providing invaluable information for planning spectroscopic follow-up observations. We also investigate any bias introduced by this selection method on the ability of surveys such as SNLS to measure cosmological parameters (e.g., w and ΩM) and find any effect to be negligible.

  4. Candidates of World Heritage Sites of Astronomy in Japan

    Science.gov (United States)

    Watanabe, Jun-ichi; Nakagiri, Masao

    2015-08-01

    Unfortunately there is no heritage site of astronomy until now in Japan. Here we report several candidates based on the importance from the historical point of view.One is the “Nisshinkan” Astronomical Observatory site of the Edo era. Many observatories were established in the Edo era, including "Asakusa observatory" of a Shogunate Government. However, most of them have been disappeared by the urban development. The only one remained until now is the “Nissshinkan” Astronomical Observatory site of which the basement made of stones is preserved. This was made in 1803 mainly for educational purpose at the “Nisshinkan” which was a local school for the Samurai’s children in Aizu area. Although a wooden building of the school was lost by a war, but this observatory mark exists because large basement of a few meters high remained. This site is now designated as a cultural asset by the local government, and can be recognized even at the present time.Another is the Repsold Meridian Transit which was designated as the Important Cultural Property of Japan in 2011. A Repsold meridian transit instrument is a telescope with a diameter of 13.5 cm and a focal length of 212 cm for meridian transit observations. It was manufactured by A. Repsold & Soehne Co. Ltd. in Hamburg, Germany in 1880, and purchased by the Naval Observatory and imported to Japan in 1881, becoming one of the most important telescopes in the dawning era of modern astronomy in Japan. The telescope escaped being damaged in the Great Kanto Earthquake, and continued to be used as a main telescope for time determination, longitude observation, and astrometry of heavenly bodies till the end of the 1950s. We confirmed that this telescope has retained its original form in 2008, and after restoration and repair, the telescope was widely opened for exhibition to the public. In June, 2011 it was designated as one of the important cultural properties of Japan. The related old instruments which brought modern

  5. FUNCTIONAL ASSESSMENT OF OLDER OBESE PATIENTS CANDIDATES FOR BARIATRIC SURGERY

    Directory of Open Access Journals (Sweden)

    Denis PAJECKI

    2014-03-01

    Full Text Available Context Obesity in the elderly is associated with exacerbation of functional decline (dependency, that occurs with aging, because of decreased muscle mass and strength, and increased joint dysfunction. Consequently, there is progressive loss of independence, autonomy, chronic pain and impaired quality of life. The weight loss can bring benefits in all these aspects, especially when accompanied by exercises. Elderly patients with morbid obesity may be submitted to surgical treatment, taking into account that the massive weight loss, eventually caused by bariatric surgery, may exacerbate the loss of muscle mass and nutritional complications that may bring harm to the overall health and quality of life of these patients. The functional assessment of elderly patients, candidates for bariatric surgery and the extent to which surgery can bring benefits to the patients, in the field of functionality, has still to be determined. Objective To describe profile functionality in obese elderly referred to a bariatric surgery program. Methods Patients with age ≥60 and BMI ≥35 underwent comprehensive geriatric assessment that evaluates co morbidities, medication use, ability to perform basic activities of daily living and instrumental activities of daily living, and the “Timedupandgo” test to evaluate mobility, whose cut-off point was ≤10 seconds. Statistical analysis was performed in order to see if there is a positive correlation of dependency with BMI and age (over or under 65 years. Results Forty subjects have completed evaluation. The mean age was 64.1 years (60-72 and 75% were women. They had an average weight of 121.1 kg (72.7-204 and a mean BMI of 47.2 kg/m2 (35.8-68.9. 16 patients (40% have shown dependency for activities of daily living, 19 (47,5% for instrumental activities of daily living and 20 patients (50% had a “Timedupandgo” test over 10 seconds. Statistical analysis (t-Student, Mann-Whitney, Binary Logistic Regression has shown

  6. Environmental Systems Research Candidates Program--FY2000 Annual report

    Energy Technology Data Exchange (ETDEWEB)

    Piet, Steven James

    2001-01-01

    The Environmental Systems Research Candidates (ESRC) Program, which is scheduled to end September 2001, was established in April 2000 as part of the Environmental Systems Research and Analysis Program at the Idaho National Engineering and Environmental Laboratory (INEEL) to provide key science and technology to meet the clean-up mission of the U.S. Department of Energy Office of Environmental Management, and perform research and development that will help solve current legacy problems and enhance the INEEL’s scientific and technical capability for solving longer-term challenges. This report documents the progress and accomplishments of the ESRC Program from April through September 2000. The ESRC Program consists of 24 tasks subdivided within four research areas: A. Environmental Characterization Science and Technology. This research explores new data acquisition, processing, and interpretation methods that support cleanup and long-term stewardship decisions. B. Subsurface Understanding. This research expands understanding of the biology, chemistry, physics, hydrology, and geology needed to improve models of contamination problems in the earth’s subsurface. C. Environmental Computational Modeling. This research develops INEEL computing capability for modeling subsurface contaminants and contaminated facilities. D. Environmental Systems Science and Technology. This research explores novel processes to treat waste and decontaminate facilities. Our accomplishments during FY 2000 include the following: • We determined, through analysis of samples taken in and around the INEEL site, that mercury emissions from the INEEL calciner have not raised regional off-INEEL mercury contamination levels above normal background. • We have initially demonstrated the use of x-ray fluorescence to image uranium and heavy metal concentrations in soil samples. • We increased our understanding of the subsurface environment; applying mathematical complexity theory to the problem of

  7. The black hole candidate binary A0620-00

    Science.gov (United States)

    Haswell, Carole Ann

    The compact object in A0620-00 was previously established as a leading black hole candidate by observations implying a minimum compact object mass, M1 approx. = 3M solar magnitude. To exclude the possibility of a neutron star primary, the constraints on M1 need to be improved. Two avenues of investigation were pursued. The mass ratio of the system, q = M1/M sub 2, was determined by observations of the radial velocity variations of the H(alpha) emission from the accretion disk around the compact object. If the wavelength shifts give an unbiased estimate of the orbital motion of the compact object, q = 10.6 + or - 2.0. However contamination by nonaxisymmetric disk emission is indicated, so q is more uncertain than the reported formal errors. The orbital inclination of the system was examined by modelling of multicolor orbital light curves, which exhibit ellipsoidal variations. The ellipsoidal amplitudes imply a spectra type of K3-K4 for the mass donor. Light curves obtained in 1986/1987 exhibit a grazing eclipse of the mass donor star by the accretion disk, providing tight constraints on the orbital inclination and the radius of the accretion disk. The accretion disk radius is comparable to the tidal radius. Limits on the orbital inclination were derived which lead to limits on the mass of the compact object: 5.50 + or - 0.15 less than or + = M1 less than or = 6.26 + or - 0.17 for q = 5.0; 4.28 + or - 0.12 less than or = M1 less than or = 4.86 + or - 0.13 for q = 10.6; 3.79 + or - 0.10 less than or = M1 less than or = 4.68 + or - 0.13 for q = 15.0. A lower limit on the mass ratio, q greater than 6.47, is established by demanding that M2 less than or = 0.85 M solar magnitude, the mass of a Roche lobe-filling main sequence star. The spectral type of the mass donor implies that q is greater than 10.6 is unlikely. Hence the results imply M1 greater than or = 4.28 + or - 0.12, which is well above the upper limit on the mass of a neutron star. This is compelling evidence

  8. The Mechanical Performance of Subscale Candidate Elastomer Docking Seals

    Science.gov (United States)

    Bastrzyk, Marta B.; Daniels, Christopher C.

    2010-01-01

    The National Aeronautics and Space Administration is developing a Low Impact Docking System (LIDS) for future exploration missions. The mechanism is a new state-of-the-art device for in-space assembly of structures and rendezvous of vehicles. At the interface between two pressurized modules, each with a version of the LIDS attached, a composite elastomer-metal seal assembly prevents the breathable air from escaping into the vacuum of space. Attached to the active LIDS, this seal mates against the passive LIDS during docking operation. The main interface seal assembly must exhibit low leak and outgas values, must be able to withstand various harsh space environments, must remain operational over a range of temperatures from -50 C to 75 C, and perform after numerous docking cycles. This paper presents results from a comprehensive study of the mechanical performance of four candidate subscale seal assembly designs at -50, 23, 50, and 75 C test temperatures. In particular, the force required to fully compress the seal during docking, and that which is required for separation during the undocking operation were measured. The height of subscale main interface seal bulbs, as well as the test temperature, were shown to have a significant effect on the forces the main interface seal of the LIDS may experience during docking and undocking operations. The average force values required to fully compress each of the seal assemblies were shown to increase with test temperature by approximately 50% from -50 to 75 C. Also, the required compression forces were shown to increase as the height of the seal bulb was increased. The seal design with the tallest elastomer seal bulb, which was 31% taller than that with the shortest bulb, required force values approximately 45% higher than those for the shortest bulb, independent of the test temperature. The force required to separate the seal was shown to increase with decreasing temperature after 15 hours of simulated docking. No adhesion

  9. Stress corrosion cracking of candidate waste container materials; Final report

    Energy Technology Data Exchange (ETDEWEB)

    Park, J.Y.; Maiya, P.S.; Soppet, W.K.; Diercks, D.R.; Shack, W.J.; Kassner, T.F. [Argonne National Lab., IL (United States)

    1992-06-01

    Six alloys have been selected as candidate container materials for the storage of high-level nuclear waste at the proposed Yucca mountain site in Nevada. These materials are Type 304L stainless steel (SS). Type 316L SS, Incoloy 825, phosphorus-deoxidized Cu, Cu-30%Ni, and Cu-7%Al. The present program has been initiated to determine whether any of these materials can survive for 300 years in the site environment without developing through-wall stress corrosion cracks. and to assess the relative resistance of these materials to stress corrosion cracking (SCC)- A series of slow-strain-rate tests (SSRTs) and fracture-mechanics crack-growth-rate (CGR) tests was performed at 93{degree}C and 1 atm of pressure in simulated J-13 well water. This water is representative, prior to the widespread availability of unsaturated-zone water, of the groundwater present at the Yucca Mountain site. Slow-strain-rate tests were conducted on 6.35-mm-diameter cylindrical specimens at strain rates of 10-{sup {minus}7} and 10{sup {minus}8} s{sup {minus}1} under crevice and noncrevice conditions. All tests were interrupted after nominal elongation strain of 1--4%. Scanning electron microscopy revealed some crack initiation in virtually all the materials, as well as weldments made from these materials. A stress- or strain-ratio cracking index ranks these materials, in order of increasing resistance to SCC, as follows: Type 304 SS < Type 316L SS < Incoloy 825 < Cu-30%Ni < Cu and Cu-7%Al. Fracture-mechanics CGR tests were conducted on 25.4-mm-thick compact tension specimens of Types 304L and 316L stainless steel (SS) and Incoloy 825. Crack-growth rates were measured under various load conditions: load ratios M of 0.5--1.0, frequencies of 10{sup {minus}3}-1 Hz, rise nines of 1--1000s, and peak stress intensities of 25--40 MPa{center_dot}m {sup l/2}.

  10. 22 CFR 11.11 - Mid-level Foreign Service officer career candidate appointments.

    Science.gov (United States)

    2010-04-01

    ... candidate's effectiveness of written expression. (6) Other exercises. Candidates who take the oral... eligible for selection for the oral examination. (4) Oral examination—(i) Purpose. The oral examination... Foreign Service. (ii) When and where given. The oral examination is individually scheduled throughout...

  11. A Proposed Pedagogical Approach for Preparing Teacher Candidates to Incorporate Academic Language in Mathematics Classrooms

    Science.gov (United States)

    Lim, Woong; Stallings, Lynn; Kim, Dong Joong

    2015-01-01

    The purpose of this article is to present issues related to prioritizing academic language in teaching performance assessments and to propose a pedagogical approach that prepares middle grades mathematics teacher candidates to teach academic language. Based on our experience with teacher candidates and our knowledge of edTPA standards involving…

  12. Doctoral Supervision in a Cross-Cultural Context: Issues Affecting Supervisors and Candidates

    Science.gov (United States)

    Winchester-Seeto, Theresa; Homewood, Judi; Thogersen, Jane; Jacenyik-Trawoger, Christa; Manathunga, Catherine; Reid, Anna; Holbrook, Allyson

    2014-01-01

    This article presents an analysis of rich data, gathered from interviews with 46 candidates and 38 supervisors from three Australian universities, about experiences of doctoral supervision in cross-cultural situations. Our analysis shows that many of the issues reported by international candidates are the same as those encountered by domestic…

  13. Self-Efficacy: Its Effects on Physical Education Teacher Candidates' Attitudes toward the Teaching Profession

    Science.gov (United States)

    Eroglu, Cihan; Unlu, Huseyin

    2015-01-01

    This study's main aim was to determine physical education (PE) teacher candidates' self-efficacy levels and attitudes toward the PE teaching profession. Designed on a survey model, this study was conducted during the 2011-2012 academic year. A total of 601 PE teacher candidates studying in the PE and sports teaching programs of six different…

  14. Teacher Candidates' Questions within the Context of an Educational Psychology Course

    Science.gov (United States)

    Gallagher, Tiffany L.

    2009-01-01

    The belief systems with which teacher candidates enter their preservice programs powerfully shape their perceptions about teaching and learning. Data were gathered from 412 teacher candidates over the course of 5 academic years. Each of the participants posed 2 questions at the beginning of their course that they would like to be answered during…

  15. The Investigation of Elementary Mathematics Teacher Candidates' Problem Solving Skills According to Various Variables

    Science.gov (United States)

    Kaya, Deniz; Izgiol, Dilek; Kesan, Cenk

    2014-01-01

    The aim was to determine elementary mathematics teacher candidates' problem solving skills and analyze problem solving skills according to various variables. The data were obtained from total 306 different grade teacher candidates receiving education in Department of Elementary Mathematics Education, Buca Faculty of Education, Dokuz Eylul…

  16. Understanding and Affecting Science Teacher Candidates' Scientific Reasoning in Introductory Astrophysics

    Science.gov (United States)

    Steinberg, Richard; Cormier, Sebastien

    2013-01-01

    This study reports on a content course for science immersion teacher candidates that emphasized authentic practice of science and thinking scientifically in the context of introductory astrophysics. We explore how 122 science teacher candidates spanning three cohorts did and did not reason scientifically and how this evolved in our program. Our…

  17. Evaluation of Critical Thinking and Reflective Thinking Skills among Science Teacher Candidates

    Science.gov (United States)

    Demir, Sibel

    2015-01-01

    The aim of this study was to evaluate and determine the critical thinking and reflective thinking skills of science teacher candidates. The study was performed with the participation of 30 teacher candidates enrolled in the science teaching department of a university in Turkey. Scales administered during the study included the California Critical…

  18. Swimming in the Water: Immersing Teacher Candidates in the Environment of a School

    Science.gov (United States)

    Duffield, Stacy K.

    2005-01-01

    Using the Professional Development School (PDS) model of teacher preparation, a Midwestern university created the potential for teacher candidates to become immersed into the environment of an elementary school. The question this study explored was, "Does increased immersion at a PDS site impact preparation of teacher candidates?" Themes emerged…

  19. The Question Asking Skills of Preschool Teacher Candidates: Turkey and America Example

    Science.gov (United States)

    Bay, D. Neslihan

    2016-01-01

    Question asking is an important skill that teachers should use during class activities. Teachers need to get used to this ability while they are teacher candidates. The aim of this research is to identify the cognitive taxonomy and the structure of the questions asked by the candidate of preschool teachers and to compare the questioning skills of…

  20. Comparative Analyses of Physics Candidates Scores in West African and National Examinations Councils

    Science.gov (United States)

    Utibe, Uduak James; Agah, John Joseph

    2015-01-01

    The study is a comparative analysis of physics candidates' scores in West African and National Examinations Councils. It also investigates influence of gender. Results of 480 candidates were randomly selected form three randomly selected Senior Science Colleges using the WASSCE and NECOSSCE computer printout sent to the schools, transformed using…