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Sample records for campestris global regulator

  1. Regulation of the type II secretion structural gene xpsE in Xanthomonas campestris Pathovar campestris by the global transcription regulator Clp.

    Science.gov (United States)

    Ge, Chao; He, Chaozu

    2008-02-01

    GspE is an important component of the type II secretion system (T2SS) in Gram-negative bacteria that supplies energy for the process of protein secretion. The role of GspE and its interactions with other components have been intensively studied. However, regulation of the gspE gene is poorly understood. In this study, we demonstrated that the transcription of xpsE, a homologue of gspE in Xanthomonas campestris pathovar campestris (Xcc), is upregulated by Clp, a homologue of the cyclic AMP-receptor protein, by directly binding to the xpsE promoter region. Overexpression of the clp gene in Xcc wild-type strain 8004 enhanced the production of XpsE as well as endoglucanase and extracellular polysaccharide (EPS).

  2. Mutations of ferric uptake regulator (fur) impair iron homeostasis, growth, oxidative stress survival, and virulence of Xanthomonas campestris pv. campestris.

    Science.gov (United States)

    Jittawuttipoka, Thichakorn; Sallabhan, Ratiboot; Vattanaviboon, Paiboon; Fuangthong, Mayuree; Mongkolsuk, Skorn

    2010-05-01

    Iron is essential in numerous cellular functions. Intracellular iron homeostasis must be maintained for cell survival and protection against iron's toxic effects. Here, we characterize the roles of Xanthomonas campestris pv. campestris (Xcc) fur, which encodes an iron sensor and a transcriptional regulator that acts in iron homeostasis, oxidative stress, and virulence. Herein, we isolated spontaneous Xcc fur mutants that had high intracellular iron concentrations due to constitutively high siderophore levels and increased expression of iron transport genes. These mutants also had reduced aerobic plating efficiency and resistance to peroxide killing. Moreover, one fur mutant was attenuated on a host plant, thus indicating that fur has important roles in the virulence of X. campestris pv. campestris.

  3. Regulation of eight avr genes by hrpG and hrpX in Xanthomonas campestris pv. campestris and their role in pathogenicity

    Institute of Scientific and Technical Information of China (English)

    XU Rongqi; LI Xianzhen; WEI Hongyu; JIANG Bole; LI Kai; HE Yongqiang; FENG Jiaxun; TANG Jiliang

    2006-01-01

    Eight putative avirulence genes in Xanthomonas campestris pv. campestris (Xcc) strain 8004 were characterized by Tn5gusA5 mutagenesis and gene expression analysis. The virulence test of mutants on Chinese radish showed that all mutants in individual avr genes except avrBs2 mutant were not significantly different from the wild type in virulence. The avrBs2 mutant showed reduced virulence and bacterial growth in planta. Gene expression analysis using β-glucuronidase as reporter indicated that avrBs1 . 1, avrBs1,avrXccB, avrXccC, avrXccE1 were regulated by hrpG, whereas avrXccA1, avrXccA2 and avrBs2 were not. RT-PCR analysis showed that all hrpG-regulated genes except avrBs1 were also regulated by hrpX. In addition, it was demonstrated that avrBs1 was responsible for elicitation of a type Ⅲ dependent hypersensitive reaction (HR) on nonhost plant pepper ECW-10R, and wild type Xcc 8004 was unable to cause HR on pepper ECW-20R.

  4. XerR, a negative regulator of XccR in Xanthomonas campestris pv.Campestris, relieves its repressor function in planta

    Institute of Scientific and Technical Information of China (English)

    Li Wang; Lili Zhang; Yunfeng Geng; Wei Xi; Rongxiang Fang; Yantao Jia

    2011-01-01

    We previously reported that XccR, a LuxR-type regulator of Xanthomonas campestris pv. eampestris (Xcc),activates the downstream proliue iminopeptidase virulence gene (pip) in response to certain host plant factor(s). In this report, we further show that the expression of the xccR gene was repressed in the culture medium by an NtrCtype response regulator, which we named XerR (XccR expression-related, repressor), and that this repression was relieved when the bacteria were grown in planta. Such a regulatory mechanism is reinforced by the observations that XerR directly bound to the xccR promoter in vitro, and that mutations at the phosphorylation-related residues of XerR resulted in the loss of its repressor function. Furthermore, the expression level ofxccR increased even in XerRoverexpressing Xcc cells when they were vacuum infiltrated into cabbage plants. We also preliminarily characterized the host factor(s) involved in the above mentioned interactions between Xcc and the host plant, showing that a plant material(s) with molecular weight(s) less than 1 kDa abolished the binding of XerR to the xccR promoter, while the same material enhanced the binding of XccR to the luxXc box in the pip promoter. Taken together, our results implicate XerR in a new layer of the regulatory mechanism controlling the expression of the virulence-related xccR/pip locus and provide clues to the identification of plant signal molecules that interact with XerR and XccR to enhance the virulence of Xcc.

  5. Transcriptome profiling of Xanthomonas campestris pv. campestris grown in minimal medium MMX and rich medium NYG.

    Science.gov (United States)

    Liu, Wei; Yu, Yan-Hua; Cao, Shi-Yuan; Niu, Xiang-Na; Jiang, Wei; Liu, Guo-Fang; Jiang, Bo-Le; Tang, Dong-Jie; Lu, Guang-Tao; He, Yong-Qiang; Tang, Ji-Liang

    2013-06-01

    Xanthomonas campestris pathovar campestris (Xcc) is the causal agent of black rot disease in cruciferous plants worldwide. Although the complete genomes of several Xcc strains have been determined, the gene expression and regulation mechanisms in this pathogen are far from clear. In this work, transcriptome profiling of Xcc 8004 grown in MMX medium (minimal medium for Xanthomonas campestris) and NYG medium (peptone yeast glycerol medium) were investigated by RNA-Seq. Using the Illumina HiSeq 2000 platform, a total of 26,514,630 reads (90 nt in average) were generated, of which 15,708,478 reads mapped uniquely to coding regions of Xcc 8004 genome. Of the 4273 annotated protein-coding genes of Xcc 8004, 629 were found differentially expressed in Xcc grown in MMX and NYG. Of the differentially expressed genes, 495 were up-regulated and 134 were down-regulated in MMX. The MMX-induced genes are mainly involved in amino acid metabolism, transport systems, atypical condition adaptation and pathogenicity, especially the type III secretion system, while the MMX-repressed genes are mainly involved in chemotaxis and degradation of small molecules. The global transcriptome analyzes of Xcc 8004 grown in MMX and NYG might facilitate the gene functional characterization of this phytopathogenic bacterium.

  6. Synergistic Activation of the Pathogenicity-Related Proline Iminopeptidase Gene in Xanthomonas campestris pv. campestris by HrpX and a LuxR Homolog

    OpenAIRE

    Zhang, Jingxi; Kan, Jinhong; Zhang, Jieqiong; Guo, Ping; Chen, Xiaoying; Fang, Rongxiang; Jia, Yantao

    2012-01-01

    Xanthomonas campestris pv. campestris strain 8004 contains an orphan quorum-sensing (QS) locus, xccR-pipXcc, in which the proline iminopeptidase (pipXcc) gene (where “Xcc” indicates that the pip gene is from X. campestris pv. campestris) is positively regulated by the LuxR homologue XccR by binding to the luxXc box of the pipXcc promoter. The disruption of pipXcc significantly attenuated the virulence of X. campestris pv. campestris. An imperfect plant-inducible promoter (PIP) box is located ...

  7. Regulation of cell wall-bound invertase in pepper leaves by Xanthomonas campestris pv. vesicatoria type three effectors.

    Directory of Open Access Journals (Sweden)

    Sophia Sonnewald

    Full Text Available Xanthomonas campestris pv. vesicatoria (Xcv possess a type 3 secretion system (T3SS to deliver effector proteins into its Solanaceous host plants. These proteins are involved in suppression of plant defense and in reprogramming of plant metabolism to favour bacterial propagation. There is increasing evidence that hexoses contribute to defense responses. They act as substrates for metabolic processes and as metabolic semaphores to regulate gene expression. Especially an increase in the apoplastic hexose-to-sucrose ratio has been suggested to strengthen plant defense. This shift is brought about by the activity of cell wall-bound invertase (cw-Inv. We examined the possibility that Xcv may employ type 3 effector (T3E proteins to suppress cw-Inv activity during infection. Indeed, pepper leaves infected with a T3SS-deficient Xcv strain showed a higher level of cw-Inv mRNA and enzyme activity relative to Xcv wild type infected leaves. Higher cw-Inv activity was paralleled by an increase in hexoses and mRNA abundance for the pathogenesis-related gene PRQ. These results suggest that Xcv suppresses cw-Inv activity in a T3SS-dependent manner, most likely to prevent sugar-mediated defense signals. To identify Xcv T3Es that regulate cw-Inv activity, a screen was performed with eighteen Xcv strains, each deficient in an individual T3E. Seven Xcv T3E deletion strains caused a significant change in cw-Inv activity compared to Xcv wild type. Among them, Xcv lacking the xopB gene (Xcv ΔxopB caused the most prominent increase in cw-Inv activity. Deletion of xopB increased the mRNA abundance of PRQ in Xcv ΔxopB-infected pepper leaves, but not of Pti5 and Acre31, two PAMP-triggered immunity markers. Inducible expression of XopB in transgenic tobacco inhibited Xcv-mediated induction of cw-Inv activity observed in wild type plants and resulted in severe developmental phenotypes. Together, these data suggest that XopB interferes with cw-Inv activity in planta to

  8. Antagonism of Bacillus spp. against Xanthomonas campestris pv. campestris

    OpenAIRE

    Leila Monteiro; Rosa de Lima Ramos Mariano; Ana Maria Souto-Maior

    2005-01-01

    The antagonism of eight Bacillus isolates was investigated against nine strains of Xanthomonas campestris pv. campestris (causal agent of crucifers black rot) to assess the role of lipopeptides in this process. Antimicrobial and hemolytic (surfactant) activity tests were performed in vitro using agar diffusion methods. Antibiosis and hemolysis were positive for four Bacillus isolates against all X. campestris pv. campestris strains. The correlation observed between antimicrobial and hemolytic...

  9. Synergistic activation of the pathogenicity-related proline iminopeptidase gene in Xanthomonas campestris pv. campestris by HrpX and a LuxR homolog.

    Science.gov (United States)

    Zhang, Jingxi; Kan, Jinhong; Zhang, Jieqiong; Guo, Ping; Chen, Xiaoying; Fang, Rongxiang; Jia, Yantao

    2012-10-01

    Xanthomonas campestris pv. campestris strain 8004 contains an orphan quorum-sensing (QS) locus, xccR-pip(Xcc), in which the proline iminopeptidase (pip(Xcc)) gene (where "Xcc" indicates that the pip gene is from X. campestris pv. campestris) is positively regulated by the LuxR homologue XccR by binding to the luxXc box of the pip(Xcc) promoter. The disruption of pip(Xcc) significantly attenuated the virulence of X. campestris pv. campestris. An imperfect plant-inducible promoter (PIP) box is located in the upstream region of the pip(Xcc) promoter, which is the putative binding site of the transcriptional activator HrpX. To explore whether the expression of the pip(Xcc) gene is regulated by HrpX, the expression level of a pip(Xcc) promoter-gusA fusion gene was assayed in an hrpX disruption mutant. The results showed that the lack of HrpX dramatically decreased the β-glucuronidase (GUS) activity. Further analyses using an electrophoretic mobility shift assay (EMSA) and chromatin immunoprecipitation (ChIP)-PCR indicated that the imperfect PIP box in X. campestris pv. campestris is specifically bound to HrpX. These data demonstrated that the pip(Xcc) gene belongs to the hrp regulon and that the imperfect PIP box of the pip(Xcc) promoter could be a cis element for the HrpX protein. We further showed in a pulldown assay that XccR can bind HrpX, suggesting that these two regulatory proteins coactivate the virulence factor by binding to the different cis elements of the pip(Xcc) gene and adapt to the host environment during X. campestris pv. campestris infection.

  10. Identification of four novel small non-coding RNAs from Xanthomonas campestris pathovar campestris

    OpenAIRE

    Lu Guang-Tao; Jiang Bo-Le; Feng Jia-Xun; He Yong-Qiang; Chen Xiao-Lin; Tang Dong-Jie; Jiang Rui-Ping; Lin Min; Tang Ji-Liang

    2010-01-01

    Abstract Background In bacteria, small non-coding RNAs (sRNAs) have been recognized as important regulators of various cellular processes. Approximately 200 bacterial sRNAs in total have been reported. However, very few sRNAs have been identified from phytopathogenic bacteria. Results Xanthomons campestris pathovar campestris (Xcc) is the causal agent of black rot disease of cruciferous crops. In this study, a cDNA library was constructed from the low-molecular weight RNA isolated from the Xc...

  11. Antagonism of Bacillus spp. against Xanthomonas campestris pv. campestris

    Directory of Open Access Journals (Sweden)

    Leila Monteiro

    2005-01-01

    Full Text Available The antagonism of eight Bacillus isolates was investigated against nine strains of Xanthomonas campestris pv. campestris (causal agent of crucifers black rot to assess the role of lipopeptides in this process. Antimicrobial and hemolytic (surfactant activity tests were performed in vitro using agar diffusion methods. Antibiosis and hemolysis were positive for four Bacillus isolates against all X. campestris pv. campestris strains. The correlation observed between antimicrobial and hemolytic activities indicated that lipopeptides were involved in the antibiosis mechanism of the studied antagonists. Fermentation studies were carried out with the isolates that showed highest antimicrobial and hemolytic activities, to follow up growth and production of bioactive and surfactant compounds. Production of bioactive and surfactant compounds was observed during the late growth phase of the Bacillus isolates.Investigação sobre o antagonismo de oito isolados de Bacillus: B. subtilis R14, B. megaterium pv. cerealis RAB7, B. megaterium pv. cerealis C211, B. megaterium C116, Bacillus sp. RAB9, B. cereus C240, Bacillus sp. C11 e B. cereus C210, contra nove linhagens de X. campestris pv. campestris (bactéria responsável pela podridão negra das crucíferas foi realizada para se verificar a participação de lipopeptídeos neste mecanismo. Testes de atividades antimicrobiana e hemolítica (surfactante foram realizados, utilizando-se o método de difusão em ágar. Antibiose e hemólise foram positivas para quatro isolados de Bacillus: R14, RAB7, C116 e C210. A correlação observada entre as atividades antimicrobiana e a hemolítica indica que lipopeptídeos estão envolvidos no mecanismo de antibiose dos isolados investigados. As fermentações foram realizadas com os isolados que demonstraram melhores resultados nos testes de atividades antimicrobiana e hemolítica: R14, RAB7 e C116, para acompanhar o crescimento e a produção de compostos bioativos e

  12. Identification of four novel small non-coding RNAs from Xanthomonas campestris pathovar campestris

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    Lu Guang-Tao

    2010-05-01

    Full Text Available Abstract Background In bacteria, small non-coding RNAs (sRNAs have been recognized as important regulators of various cellular processes. Approximately 200 bacterial sRNAs in total have been reported. However, very few sRNAs have been identified from phytopathogenic bacteria. Results Xanthomons campestris pathovar campestris (Xcc is the causal agent of black rot disease of cruciferous crops. In this study, a cDNA library was constructed from the low-molecular weight RNA isolated from the Xcc strain 8004 grown to exponential phase in the minimal medium XVM2. Seven sRNA candidates were obtained by sequencing screen of 2,500 clones from the library and four of them were confirmed to be sRNAs by Northern hybridization, which were named sRNA-Xcc1, sRNA-Xcc2, sRNA-Xcc3, and sRNA-Xcc4. The transcription start and stop sites of these sRNAs were further determined. BLAST analysis revealed that the four sRNAs are novel. Bioinformatics prediction showed that a large number of genes with various known or unknown functions in Xcc 8004 are potential targets of sRNA-Xcc1, sRNA-Xcc3 and sRNA-Xcc4. In contrast, only a few genes were predicted to be potential targets of sRNA-Xcc2. Conclusion We have identified four novel sRNAs from Xcc by a large-scale screen. Bioinformatics analysis suggests that they may perform various functions. This work provides the first step toward understanding the role of sRNAs in the molecular mechanisms of Xanthomonas campestris pathogenesis.

  13. Crystal structure of the YajQ-family protein XC_3703 from Xanthomonas campestris pv. campestris.

    Science.gov (United States)

    Zhao, Zhixin; Wu, Zhen; Zhang, Jun

    2016-09-01

    As an important bacterial second messenger, bis-(3',5')-cyclic diguanylate (cyclic di-GMP or c-di-GMP) has been implicated in numerous biological activities, including biofilm formation, motility, survival and virulence. These processes are manipulated by the binding of c-di-GMP to its receptors. XC_3703 from the plant pathogen Xanthomonas campestris pv. campestris, which belongs to the YajQ family of proteins, has recently been identified as a potential c-di-GMP receptor. XC_3703, together with XC_2801, functions as a transcription factor activating virulence-related genes, which can be reversed by the binding of c-di-GMP to XC_3703. However, the structural basis of how c-di-GMP regulates XC_3703 remains elusive. In this study, the structure of XC_3703 was determined to 2.1 Å resolution using the molecular-replacement method. The structure of XC_3703 consists of two domains adopting the same topology, which is similar to that of the RNA-recognition motif (RRM). Arg65, which is conserved among the c-di-GMP-binding subfamily of the YajQ family of proteins, together with Phe80 in domain II, forms a putative c-di-GMP binding site.

  14. Dental hygiene regulation: a global perspective.

    Science.gov (United States)

    Johnson, P M

    2008-08-01

    Occupational regulation of health personnel is important to professional associations and their members, the public that relies on their services and the regulatory agencies responsible for their conduct. There is increasing interest in ensuring that dental hygiene regulation fosters the continuing evolution of the profession and its contribution to oral health. The keynote address for the 2007 Regulatory Forum on Dental Hygiene, this paper discusses the rationale for and issues pertaining to occupational regulation, outlines the evolvement of dental hygiene and identifies regulatory options for the profession. Professional regulation exists to ensure public safety, health and welfare. However, negative political-economic side effects coupled with environmental pressures have resulted in increased scrutiny for health professionals. One such profession is dental hygiene. Its evolution has been dramatic, in particular over the past few decades, as illustrated by its rapidly increasing numbers and broader distribution globally, gradual shift to the baccalaureate as the entry-level educational requirement and increase in postgraduate programs and expanding scope of practice and increased professional autonomy. Regulatory changes have been more gradual. Regulation is mandatory for the vast majority of dental hygienists. Of the options available, the practice act - the most rigorous type, is predominant. Globally, regulation tends to be administered directly by the government (n = 9 countries) more so than indirectly through a dental board (n = 4) or self-regulation (n = 3). Whether regulated directly or indirectly, dental hygienists increasingly are seeking a greater role in shaping their professional future. Self-regulation, its responsibilities, misperceptions and challenges, is examined as an option.

  15. Arbitrage and Competition in Global Financial Regulation

    DEFF Research Database (Denmark)

    Ringe, Wolf-Georg

    Regulatory arbitrage in financial markets refers to a number of strategies that market participants use to avoid the reach of regulation, in particular by virtue of shifting trading abroad or else relocating activities or operations of financial institutions to other jurisdictions. Where...... their standards solely to attract businesses and thereby impose externalities on the worldwide financial market by undermining financial stability as a global public good. Policymakers worldwide are experimenting with remedies to respond to the phenomenon. I introduce the importance of an effective special...... institutions’ excessive risk-taking. If such risk-taking would be judged by market discipline instead of posing a risk to global financial stability, the main downside of regulatory competition could be restrained. Within the boundaries of such a system, competition could then operate and contribute...

  16. Chokepoints global private regulation on the Internet

    CERN Document Server

    Tusikov, Natasha

    2016-01-01

    In January 2012, millions participated in the now-infamous "Internet blackout" against the Stop Online Piracy Act, protesting the power it would have given intellectual property holders over the Internet. However, while SOPA's withdrawal was heralded as a victory for an open Internet, a small group of corporations, tacitly backed by the US and other governments, have implemented much of SOPA via a series of secret, handshake agreements. Drawing on extensive interviews, Natasha Tusikov details the emergence of a global regime in which large Internet firms act as regulators for powerful intellec

  17. Flavonoides de Lonchocarpus campestris (Leguminosae

    Directory of Open Access Journals (Sweden)

    Andreza Maria L. Pires

    2011-01-01

    Full Text Available A new flavone named 3,4',5,6-tetramethoxy-[2'',3'':7,8]furanoflavone besides the known flavonoids (2S,3R,4S-3,4,5,8-tetramethoxy-[2'',3'':6,7]-furanoflavan, 3,6-dimethoxy-2'',2''-dimethylcromene-[2'',3'':7,8] -flavone, 3,5,6-trimethoxy-[2'',3'':7,8]-furanoflavone, 2,4',4,5-tetramethoxy-[2'',3'':6,7]-furanodihydroaurone, (2R,3S,4S-3,4,5,6-tetramethoxy-[2'',3'':7,8]-furanoflavan and 3',4'-methylenodioxy-5,6-dimethoxy-[2'',3'':7,8]-furanoflavone were isolated from the root barks of Lonchocarpus campestris. The complete ¹H and 13C NMR assignments of the new furan flavonoid was performed using 1D and 2D pulse sequences, including COSY, HMQC and HMBC experiments.

  18. Hydrologic Regulation of Global Geochemical Cycles

    Science.gov (United States)

    Maher, K.

    2015-12-01

    Earth's temperature is thought to be regulated by a negative feedback between atmospheric CO2 levels and chemical weathering of silicate rocks. However, direct evidence for the operation of this feedback over million-year timescales is difficult to obtain. For example, weathering fluxes over the last 20 million years of the Cenozoic Era, calculated using marine isotopic proxies (i.e. 87Sr/86Sr, δ7Li, and 187Os/188Os), appear inconsistent with past atmospheric CO2 levels and carbon mass balance. Similarly, observations from modern catchments suggest that chemical weathering fluxes are strongly correlated with erosion rates and only weakly correlated with temperature. As an alternative approach to evaluating the operation of a negative feedback, we use the major surface reservoirs of carbon to determine the imbalance in the geologic carbon cycle and the required silicate weathering flux over the Cenozoic. A miniscule (0.5-1%) increase in silicate weathering is necessary to explain the long-term decline in CO2 levels over the Cenozoic, providing evidence for a strong negative feedback between silicate weathering and climate. Rather than an appreciable increase in the silicate weathering flux, the long-term decrease in CO2levels may be due to an increase in the strength of the silicate weathering feedback. To explain the observed variations in the strength of the weathering feedback during the Cenozoic, we present a model for silicate weathering where hydrologic processes regulate climatic and tectonic forcings due to the presence of a thermodynamic limit to weathering fluxes. Climate regulation by silicate weathering is thus strongest when global topography is elevated, similar to today, and lowest when global topography is more subdued, allowing planetary temperatures to vary depending on the global distribution of topography and mountain belts. These results also motivate several key outstanding challenges in earth surface processes, including the need to

  19. Flavonoids from Lonchocarpus campestris (Leguminosae); Flavonoides de Lonchocarpus campestris (Leguminosae)

    Energy Technology Data Exchange (ETDEWEB)

    Pires, Andreza Maria L.; Silveira, Edilberto R.; Pessoa, Otilia Deusdenia L., E-mail: opessoa@ufc.b [Universidade Federal do Ceara (DQOI/UFC), Fortaleza, CE (Brazil). Dept. de Quimica Organica e Inorganica

    2011-07-01

    A new flavone named 3,4',5,6-tetramethoxy-[2'', 3'':7,8] furanoflavone besides the known flavonoids (2S,3R,4S)-3,4,5,8-tetramethoxy-[2'',3'':6,7]-furanoflavan, 3,6-dimethoxy-2'',2''-dimethylcromene-[2'',3'':7,8]-flavone, 3,5,6-trimethoxy-[2'',3'':7,8]-furanoflavone, 2,4',4,5-tetramethoxy-[2'',3'':6,7]-furanodihydroaurone, (2R,3S,4S)-3,4,5,6-tetramethoxy-[2'',3'':7,8]-furanoflavan and 3',4'-methylenedioxy-5,6-dimethoxy-[2'',3'':7,8]-furanoflavone were isolated from the root barks of Lonchocarpus campestris. The complete {sup 1}H and {sup 13}C NMR assignments of the new furan flavonoid was performed using 1D and 2D pulse sequences, including COSY, HMQC and HMBC experiments. (author)

  20. Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris

    OpenAIRE

    Qian, Wei; Jia, Yantao; Ren, Shuang-Xi; He, Yong-Qiang; Feng, Jia-Xun; Lu, Ling-Feng; Sun, Qihong; Ying, Ge; Tang, Dong-Jie; Tang, Hua; Wu, Wei; Hao, Pei; Wang, Lifeng; Jiang, Bo-Le; Zeng, Shenyan

    2005-01-01

    Xanthomonas campestris pathovar campestris (Xcc) is the causative agent of crucifer black rot disease, which causes severe losses in agricultural yield world-wide. This bacterium is a model organism for studying plant-bacteria interactions. We sequenced the complete genome of Xcc 8004 (5,148,708 bp), which is highly conserved relative to that of Xcc ATCC 33913. Comparative genomics analysis indicated that, in addition to a significant genomic-scale rearrangement cross the replication axis bet...

  1. Construction and characterization of a hrpG mutant rendering constitutive expression of hrp genes in Xanthomonas campestris pv. campestris

    Institute of Scientific and Technical Information of China (English)

    JIANG Bole; XU Rongqi; LI Xianzhen; WEI Hongyu; BAI Faan; HU Xi; HE Yongqiang; TANG Jiliang

    2006-01-01

    The expression of hrp genes in Xanthomonas is regulated by hrpG, an OmpR-type transcriptional activator, and can be induced by artificial mimic medium XVM2, but repressed in rich medium NYG. In this study, a site-specific mutation of hrpG in Xanthomonas campestris pv. campestris (Xcc) was generated by PCR-directed point mutagenesis and was characterized by its phenotype and transcriptional expression analyses. The results indicated that the E45K mutated hrpG rendered all the hrp genes expressing constitutively in the suppression medium NYG. Plant test showed that mutated hrpG enhanced the timing and intensity of hypersensitive reaction (HR) on the nonhost plant pepper, but did not affect the growth of Xcc in both culture medium and plants. The E45K mutation did not cause significant changes of production of exopolysaccharide, extracellular cellulase and amylase, but it inhibited the secretion of extracellular protease. This mutant 8004 * is more suitable than the wild type for identifying hrp-dependent effectors in vitro and studying the transcriptional regulation genome-wide.

  2. Dissecting specific and global transcriptional regulation of bacterial gene expression

    NARCIS (Netherlands)

    Gerosa, Luca; Kochanowski, Karl; Heinemann, Matthias; Sauer, Uwe

    2013-01-01

    Gene expression is regulated by specific transcriptional circuits but also by the global expression machinery as a function of growth. Simultaneous specific and global regulation thus constitutes an additional-but often neglected-layer of complexity in gene expression. Here, we develop an experiment

  3. 75 FR 75904 - Global Terrorism Sanctions Regulations; Terrorism Sanctions Regulations; Foreign Terrorist...

    Science.gov (United States)

    2010-12-07

    ... Office of Foreign Assets Control 31 CFR Parts 594, 595, and 597 Global Terrorism Sanctions Regulations; Terrorism Sanctions Regulations; Foreign Terrorist Organizations Sanctions Regulations AGENCY: Office of... (``OFAC'') of the U.S. Department of the Treasury is amending the Global Terrorism Sanctions...

  4. Occurrence of Xanthomonas campestris pv. campestris (Pammel, 1895 Dowson 1939, on Brassicas in Montenegro

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    Dragana Radunović

    2012-01-01

    Full Text Available Brassicas form the most important group of vegetable crops in Montenegro. The cabbage(Brassica oleracea var. capitata is most commonly grown, although other brassicas,particularly kale, Brussels sprout, cauliflower and broccoli, have been increasingly producedsince recently. One of the specialties of vegetable production in Montenegro is growing ofcollard (Brassica oleracea var. acephala, which is the simplest variety of the Brassica oleraceaspecies and in the nearest relation with their wild ancestor – the sylvestris variety.Diseases are the main restrictive factors for successful production of these vegetables.Susceptibility of the cultivars and inadequate control often result in more or less damagedcrops in some plots.Causal agents of brassica diseases, especially bacterial, have not been investigated inMontenegro until 2009. Since the symptoms observed in 2009 were „V” shaped leaf edgenecrosis and black rot of vascular tissue, it was assumed that they were caused by plantpathogenic bacterium Xanthomonas campestris pv. campestris.Samples of the infected plants were collected from different localities in Montenegro.Isolation and identification of the bacterium were performed using laboratory methodsaccording to Schaad (1980, Lelliott and Stead (1987 and Arsenijević (1997. Examinationof chosen bacterial isolates was conducted using both, classical bacteriological methods(examination of their pathogenic, morphological, cultivation and biochemical and physiologicalcharacteristics, and ELISA test.The obtained results confirmed the presence of X.campestris pv. campestris (Pammel,1895 Dowson 1939, on cabbage, kale, broccoli and collard in Montenegro. This is the firstexperimental evidence that collard is the host of X. campestris pv. campestris in Montenegro.

  5. The liberal battlefields of global business regulation

    OpenAIRE

    Macdonald, Kate; Macdonald, Terry

    2010-01-01

    The global justice movement has often been associated with opposition to the broad programme of ‘neoliberalism’ and associated patterns of ‘corporate globalisation’, creating a widespread impression that this movement is opposed to liberalism more broadly conceived. Our goal in this article is to challenge this widespread view. By engaging in critical interpretive analysis of the contemporary ‘corporate accountability’ movement, we argue that the corporate ...

  6. 十字花科黑腐病菌中转录调控因子HpaR1调控一个纤维素酶基因的表达%The Transcriptional Regulator HpaR1 of Xanthomonas campestris pv.campe-stris (Xcc) 8004 Regulates the Expression of a Extracellular Cellulase Gene

    Institute of Scientific and Technical Information of China (English)

    薛番艳; 苏辉昭; 刘兴艳; 梁伟; 李磊; 李瑞芳; 陆光涛

    2012-01-01

    十字花科黑腐病菌(Xcc8004)中的一个转录调控因子XC_2736 (HpaR1)在致病过程中具有重要的作用.前期研究发现该转录调控因子可能调控胞外纤维素酶的合成.为了解HpaR1对纤维素酶的转录调控机理,本研究对HpaR1进行原核表达纯化,并与488 bp的包含XC_0639的启动子区DNA片段进行凝胶电泳迁移率试验,发现HpaR1与XC_0639启动子可以发生结合.将488 bp的XC_0639的启动子DNA片段与报告基因gus融合,构建XC_0639的报告质粒pGUS0639r,分别导入野生型8004菌株和缺失突变体DM2736中,分析发现在突变体背景下GUS的表达水平比野生型背景明显降低.表明HpaR1正调控XC_0639的表达.构建XC_0639的极性整合突变体PK0639,检测发现PK0639几乎丧失胞外纤维素酶的活力;通过功能反式互补构建的互补菌株CPK0639可以恢复纤维素酶活性.研究结果表明HpaR1通过调控纤维素酶基因XC_0639的表达来调控细胞的纤维素酶活性.本研究为更深入地了解HpaR1如何调控细菌生理生化功能奠定了基础.%The transcriptional regulator XC-2736 {HpaRl) of X. campestris pv. campestris (Xcc) 8004 plays important roles in regulating bacterial diverse biological processes. Previous work showed that this transcriptional regulator might play role on extracellular cellulase. To illustrate the regulatory mechanism, HpaRl was over expressed, and electrophoretic mobility shift assays (EMSA) were performed using HpaRl protein and the promoter fragment end XCA-p of XC_0639. Results showed that HpaRl could specifically bind to the promoter fragment of XC_0639. The reporter plasmid pGUS0639r was constructed by fusing the promoter of XC_0639 with gus gene, and them been introduced into wild type strain 8004 and the HpaRl mutant DM2736, respectively. The expression level of GUS decreased significantly in the mutant, compared to the wild type background, suggesting HpaRl positively regulates the expression of XC_0639

  7. Nuclear transport factors: global regulation of mitosis.

    Science.gov (United States)

    Forbes, Douglass J; Travesa, Anna; Nord, Matthew S; Bernis, Cyril

    2015-08-01

    The unexpected repurposing of nuclear transport proteins from their function in interphase to an equally vital and very different set of functions in mitosis was very surprising. The multi-talented cast when first revealed included the import receptors, importin alpha and beta, the small regulatory GTPase RanGTP, and a subset of nuclear pore proteins. In this review, we report that recent years have revealed new discoveries in each area of this expanding story in vertebrates: (a) The cast of nuclear import receptors playing a role in mitotic spindle regulation has expanded: both transportin, a nuclear import receptor, and Crm1/Xpo1, an export receptor, are involved in different aspects of spindle assembly. Importin beta and transportin also regulate nuclear envelope and pore assembly. (b) The role of nucleoporins has grown to include recruiting the key microtubule nucleator - the γ-TuRC complex - and the exportin Crm1 to the mitotic kinetochores of humans. Together they nucleate microtubule formation from the kinetochores toward the centrosomes. (c) New research finds that the original importin beta/RanGTP team have been further co-opted by evolution to help regulate other cellular and organismal activities, ranging from the actual positioning of the spindle within the cell perimeter, to regulation of a newly discovered spindle microtubule branching activity, to regulation of the interaction of microtubule structures with specific actin structures. (d) Lastly, because of the multitudinous roles of karyopherins throughout the cell cycle, a recent large push toward testing their potential as chemotherapeutic targets has begun to yield burgeoning progress in the clinic.

  8. The liberal battlefields of global business regulation

    Directory of Open Access Journals (Sweden)

    Kate Macdonald

    2010-11-01

    Full Text Available The global justice movement has often been associated with opposition to the broad programme of ‘neoliberalism’ and associated patterns of ‘corporate globalisation’, creating a widespread impression that this movement is opposed to liberalism more broadly conceived. Our goal in this article is to challenge this widespread view. By engaging in critical interpretive analysis of the contemporary ‘corporate accountability’ movement, we argue that the corporate accountability agenda is not opposed to the core values of a liberal project. Rather, it is seeking to reconfigure the design of liberal institutions of individual rights-protection, adjusting these for new material conditions associated with economic globalisation, under which powerful corporations alongside states now pose direct and significant threats to individual rights. This activist agenda is, therefore, much less radical in its challenge to the prevailing liberal global order than it may initially appear, since it functions to buttress rather than corrode many core normative commitments underpinning the liberal political project.

  9. Regulation of alcohol marketing: a global view.

    Science.gov (United States)

    Casswell, Sally; Maxwell, Anna

    2005-09-01

    The marketing of alcohol produces a new challenge for policy development internationally, in part because of the increase in the use of new, unmeasured technologies. Many of these new developments are, as yet, relatively invisible in the policy arena. New approaches in branding, the utilization of marketing opportunities via branded events and new products provide additional complexity to attempts to monitor and to restrict the impact of marketing on young people and other vulnerable groups. Current attempts to restrict marketing globally, which rely primarily on voluntary codes and focus on traditional media, are inadequate to these challenges. A new statutory framework is required to enable the monitoring and control of the full marketing mix in ways which match the sophistication of the marketing efforts themselves.

  10. The roles of peroxide protective regulons in protecting Xanthomonas campestris pv. campestris from sodium hypochlorite stress.

    Science.gov (United States)

    Charoenlap, Nisanart; Sornchuer, Phornphan; Piwkam, Anong; Srijaruskul, Kriangsuk; Mongkolsuk, Skorn; Vattanaviboon, Paiboon

    2015-05-01

    The exposure of Xanthomonas campestris pv. campestris to sublethal concentrations of a sodium hypochlorite (NaOCl) solution induced the expression of genes that encode peroxide scavenging enzymes within the OxyR and OhrR regulons. Sensitivity testing in various X. campestris mutants indicated that oxyR, katA, katG, ahpC, and ohr contributed to protection against NaOCl killing. The pretreatment of X. campestris cultures with oxidants, such as hydrogen peroxide (H2O2), t-butyl hydroperoxide, and the superoxide generator menadione, protected the bacteria from lethal concentrations of NaOCl in an OxyR-dependent manner. Treating the bacteria with a low concentration of NaOCl resulted in the adaptive protection from NaOCl killing and also provided cross-protection from H2O2 killing. Taken together, the results suggest that the toxicity of NaOCl is partially mediated by the generation of peroxides and other reactive oxygen species that are removed by primary peroxide scavenging enzymes, such as catalases and AhpC, as a part of an overall strategy that protects the bacteria from the lethal effects of NaOCl.

  11. Colonization of cauliflower blossom (Brassica oleracea) by Xanthomonas campestris pv. campestris, via flies (Calliphora vomitoria) can result in seed infestation

    NARCIS (Netherlands)

    Wolf, van der J.M.; Zouwen, van der P.S.

    2010-01-01

    Inoculation of cauliflower blossom with Xanthomonas campestris pv. campestris (Xcc), by brush or pollination with blue bottle flies (Calliphora vomitoria) as a vector, can result in seed infestation. Two years of poly-tunnel experiments with fly inoculation of cauliflower has shown that in approxima

  12. Global Transient Stability and Voltage Regulation for Multimachine Power Systems

    DEFF Research Database (Denmark)

    Gordon, Mark; Hill, David J.

    2008-01-01

    This paper addresses simultaneously the major fundamental and difficult issues of nonlinearity, uncertainty, dimensionality and globality to derive performance enhancing power system stability control. The main focus is on simultaneous enhancement of transient stability and voltage regulation...... law is implemented to coordinate transient stabilizer and voltage regulator for each machine. Digital simulation studies show that global control scheme achieves unified transient stability and voltage regulation in the presence of parametric uncertainties and significant sudden changes in the network...... of power systems. This problem arises from the practical concern that both frequency and voltage control are important indices of power system control and operation but they are ascribed to different stages of system operation, i.e. the transient and post transient period respectively. The Direct Feedback...

  13. The Xanthomonas campestris pv. vesicatoria citH gene is expressed early in the infection process of tomato and is positively regulated by the TctDE two-component regulatory system.

    Science.gov (United States)

    Tamir-Ariel, Dafna; Rosenberg, Tally; Burdman, Saul

    2011-01-01

    Xanthomonas campestris pv. vesicatoria (Xcv) is the causal agent of bacterial spot disease of tomato and pepper. Previously, we have reported the adaptation of a recombinase- or resolvase-based in vivo expression technology (RIVET) approach to identify Xcv genes that are specifically induced during its interaction with tomato. Analysis of some of these genes revealed that a citH (citrate transporter) homologous gene contributes to Xcv virulence on tomato. Here, we demonstrate that the citH product indeed facilitates citrate uptake by showing the following: citH is specifically needed for Xcv growth in citrate, but not in other carbon sources; the citH promoter is specifically induced by citrate; and the concentration of citrate from tomato leaf apoplast is considerably reduced following growth of the wild-type and a citH-complemented strain, but not the citH mutant. We also show that, in the Xcv-tomato interaction, the promoter activity of the citH gene is induced as early as 2.5h after Xcv is syringe infiltrated into tomato leaves, and continues to be active for at least 96h after inoculation. We identified an operon containing a two-component regulatory system homologous to tctD/tctE influencing citH expression in Xcv, as well as its heterologous expression in Escherichia coli. The expression of hrp genes does not seem to be affected in the citH mutant, and this mutant cannot be complemented for growth in planta when co-inoculated with the wild-type strain, indicating that citrate uptake in the apoplast is important for the virulence of Xcv.

  14. [Flavonoids of Artemisia campestris, ssp. glutinosa].

    Science.gov (United States)

    Hurabielle, M; Eberle, J; Paris, M

    1982-10-01

    Four flavanones (pinostrobin, pinocembrin, sakuranetin and naringenin), one dihydroflavonol (7-methyl aromadendrin) and one flavone (hispidulin) have been isolated from Artemisia campestris L. ssp. glutinosa Gay and identified by spectroscopic methods. Artemisia campestris L. sous-espèce glutinosa Gay est une Composée Anthémidée largement répandue sur les sables du littoral méditerranéean et abondante dans certaines régions d'Espagne et d'Italie. Dans le cadre d'une étude chimiotaxonomique du genre Artemisia Tourn., nous nous sommes intéressés à l'analyse des flavonoïdes, composés jamais décrits, à notre connaissance, dans cette espèce d' Artemisia. Les sommités fleuries d' Artemisia campestris sous-espèce glutinosa, séchées et pulvérisées, sont dégraissées à l'ether de pétrole et épuisées par le chloroforme. Le fractionnement de l'extrait chloroformique, par chromatographie sur colonne de silice, et la purification de certaines fractions conduisent à l'isolement de six génines flavoniques, à l'etat pur. L' étude des spectres UV, des spectres de masse et des spectres de RMN [1,2] et la comparaison avec des échantillons authentiques permettent de proposer, pour ces flavonoïdes, les structures de la pinostrobine [3], de la pinocembrine [4], de la sakuranétine, de la naringénine [5] (flavanones), de la méthyl-7-aromadendrine, [6, 7] (dihydroflavonol) et de l'hispiduline [8, 9] (flavone); quatre de ces génines sont méthylées. Parmi ces flavonoïdes, la pinostrobine n'a jamais été décrite, à notre connaissance, dans la famille des Composées; la pinocembrine, la sakuranétine et la naringénine ont déjà été signalées chez quelques Astéracées et Eupatoriées [10], et l'hispiduline dans la tribu des Anthémidées ( Santolina chamaecyparissus L.) [8]. Seule, la méthyl-7-aromadendrine semble décrite, à ce jour, dans le genre Artemisia Tourn. [7].

  15. Sensitivity to copper in Xanthomonas campestris pv. viticola

    OpenAIRE

    2009-01-01

    ABSTRACT Bacterial canker, caused by Xanthomonas campestris pv. viticola, affects grapevines in the irrigated areas of the São Francisco river valley, in the states of Pernambuco and Bahia. Several practices for disease management have been adopted including copper sprays.This is the only available chemical control method and most frequently used in the areas affected by the disease. The objective of this work was to determine the sensitivity to copper of strains of X. campestris pv. vi...

  16. Global health security and the International Health Regulations

    Directory of Open Access Journals (Sweden)

    Oliva Otavio

    2010-12-01

    Full Text Available Abstract Global nuclear proliferation, bioterrorism, and emerging infections have challenged national capacities to achieve and maintain global security. Over the last century, emerging infectious disease threats resulted in the development of the preliminary versions of the International Health Regulations (IHR of the World Health Organization (WHO. The current HR(2005 contain major differences compared to earlier versions, including: substantial shifts from containment at the border to containment at the source of the event; shifts from a rather small disease list (smallpox, plague, cholera, and yellow fever required to be reported, to all public health threats; and shifts from preset measures to tailored responses with more flexibility to deal with the local situations on the ground. The new IHR(2005 call for accountability. They also call for strengthened national capacity for surveillance and control; prevention, alert, and response to international public health emergencies beyond the traditional short list of required reporting; global partnership and collaboration; and human rights, obligations, accountability, and procedures of monitoring. Under these evolved regulations, as well as other measures, such as the Revolving Fund for vaccine procurement of the Pan American Health Organization (PAHO, global health security could be maintained in the response to urban yellow fever in Paraguay in 2008 and the influenza (H1N1 pandemic of 2009-2010.

  17. Aflatoxin regulations in a network of global maize trade.

    Science.gov (United States)

    Wu, Felicia; Guclu, Hasan

    2012-01-01

    Worldwide, food supplies often contain unavoidable contaminants, many of which adversely affect health and hence are subject to regulations of maximum tolerable levels in food. These regulations differ from nation to nation, and may affect patterns of food trade. We soughtto determine whether there is an association between nations' food safety regulations and global food trade patterns, with implications for public health and policymaking. We developed a network model of maize trade around the world. From maize import/export data for 217 nations from 2000-2009, we calculated basic statistics on volumes of trade; then examined how regulations of aflatoxin, a common contaminant of maize, are similar or different between pairs of nations engaging in significant amounts of maize trade. Globally, market segregation appears to occur among clusters of nations. The United States is at the center of one cluster; European countries make up another cluster with hardly any maize trade with the US; and Argentina, Brazil, and China export maize all over the world. Pairs of nations trading large amounts of maize have very similar aflatoxin regulations: nations with strict standards tend to trade maize with each other, while nations with more relaxed standards tend to trade maize with each other. Rarely among the top pairs of maize-trading nations do total aflatoxin standards (standards based on the sum of the levels of aflatoxins B(1), B(2), G(1), and G(2)) differ by more than 5 µg/kg. These results suggest that, globally, separate maize trading communities emerge; and nations tend to trade with other nations that have very similar food safety standards.

  18. Aflatoxin Regulations in a Network of Global Maize Trade

    Science.gov (United States)

    Wu, Felicia; Guclu, Hasan

    2012-01-01

    Worldwide, food supplies often contain unavoidable contaminants, many of which adversely affect health and hence are subject to regulations of maximum tolerable levels in food. These regulations differ from nation to nation, and may affect patterns of food trade. We soughtto determine whether there is an association between nations' food safety regulations and global food trade patterns, with implications for public health and policymaking. We developed a network model of maize trade around the world. From maize import/export data for 217 nations from 2000–2009, we calculated basic statistics on volumes of trade; then examined how regulations of aflatoxin, a common contaminant of maize, are similar or different between pairs of nations engaging in significant amounts of maize trade. Globally, market segregation appears to occur among clusters of nations. The United States is at the center of one cluster; European countries make up another cluster with hardly any maize trade with the US; and Argentina, Brazil, and China export maize all over the world. Pairs of nations trading large amounts of maize have very similar aflatoxin regulations: nations with strict standards tend to trade maize with each other, while nations with more relaxed standards tend to trade maize with each other. Rarely among the top pairs of maize-trading nations do total aflatoxin standards (standards based on the sum of the levels of aflatoxins B1, B2, G1, and G2) differ by more than 5 µg/kg. These results suggest that, globally, separate maize trading communities emerge; and nations tend to trade with other nations that have very similar food safety standards. PMID:23049773

  19. Aflatoxin regulations in a network of global maize trade.

    Directory of Open Access Journals (Sweden)

    Felicia Wu

    Full Text Available Worldwide, food supplies often contain unavoidable contaminants, many of which adversely affect health and hence are subject to regulations of maximum tolerable levels in food. These regulations differ from nation to nation, and may affect patterns of food trade. We soughtto determine whether there is an association between nations' food safety regulations and global food trade patterns, with implications for public health and policymaking. We developed a network model of maize trade around the world. From maize import/export data for 217 nations from 2000-2009, we calculated basic statistics on volumes of trade; then examined how regulations of aflatoxin, a common contaminant of maize, are similar or different between pairs of nations engaging in significant amounts of maize trade. Globally, market segregation appears to occur among clusters of nations. The United States is at the center of one cluster; European countries make up another cluster with hardly any maize trade with the US; and Argentina, Brazil, and China export maize all over the world. Pairs of nations trading large amounts of maize have very similar aflatoxin regulations: nations with strict standards tend to trade maize with each other, while nations with more relaxed standards tend to trade maize with each other. Rarely among the top pairs of maize-trading nations do total aflatoxin standards (standards based on the sum of the levels of aflatoxins B(1, B(2, G(1, and G(2 differ by more than 5 µg/kg. These results suggest that, globally, separate maize trading communities emerge; and nations tend to trade with other nations that have very similar food safety standards.

  20. Global self-regulation of the cellular metabolic structure.

    Directory of Open Access Journals (Sweden)

    Ildefonso M De la Fuente

    Full Text Available BACKGROUND: Different studies have shown that cellular enzymatic activities are able to self-organize spontaneously, forming a metabolic core of reactive processes that remain active under different growth conditions while the rest of the molecular catalytic reactions exhibit structural plasticity. This global cellular metabolic structure appears to be an intrinsic characteristic common to all cellular organisms. Recent work performed with dissipative metabolic networks has shown that the fundamental element for the spontaneous emergence of this global self-organized enzymatic structure could be the number of catalytic elements in the metabolic networks. METHODOLOGY/PRINCIPAL FINDINGS: In order to investigate the factors that may affect the catalytic dynamics under a global metabolic structure characterized by the presence of metabolic cores we have studied different transitions in catalytic patterns belonging to a dissipative metabolic network. The data were analyzed using non-linear dynamics tools: power spectra, reconstructed attractors, long-term correlations, maximum Lyapunov exponent and Approximate Entropy; and we have found the emergence of self-regulation phenomena during the transitions in the metabolic activities. CONCLUSIONS/SIGNIFICANCE: The analysis has also shown that the chaotic numerical series analyzed correspond to the fractional Brownian motion and they exhibit long-term correlations and low Approximate Entropy indicating a high level of predictability and information during the self-regulation of the metabolic transitions. The results illustrate some aspects of the mechanisms behind the emergence of the metabolic self-regulation processes, which may constitute an important property of the global structure of the cellular metabolism.

  1. The xylan utilization system of the plant pathogen Xanthomonas campestris pv campestris controls epiphytic life and reveals common features with oligotrophic bacteria and animal gut symbionts.

    Science.gov (United States)

    Déjean, Guillaume; Blanvillain-Baufumé, Servane; Boulanger, Alice; Darrasse, Armelle; Dugé de Bernonville, Thomas; Girard, Anne-Laure; Carrére, Sébastien; Jamet, Stevie; Zischek, Claudine; Lautier, Martine; Solé, Magali; Büttner, Daniela; Jacques, Marie-Agnès; Lauber, Emmanuelle; Arlat, Matthieu

    2013-05-01

    Xylan is a major structural component of plant cell wall and the second most abundant plant polysaccharide in nature. Here, by combining genomic and functional analyses, we provide a comprehensive picture of xylan utilization by Xanthomonas campestris pv campestris (Xcc) and highlight its role in the adaptation of this epiphytic phytopathogen to the phyllosphere. The xylanolytic activity of Xcc depends on xylan-deconstruction enzymes but also on transporters, including two TonB-dependent outer membrane transporters (TBDTs) which belong to operons necessary for efficient growth in the presence of xylo-oligosaccharides and for optimal survival on plant leaves. Genes of this xylan utilization system are specifically induced by xylo-oligosaccharides and repressed by a LacI-family regulator named XylR. Part of the xylanolytic machinery of Xcc, including TBDT genes, displays a high degree of conservation with the xylose-regulon of the oligotrophic aquatic bacterium Caulobacter crescentus. Moreover, it shares common features, including the presence of TBDTs, with the xylan utilization systems of Bacteroides ovatus and Prevotella bryantii, two gut symbionts. These similarities and our results support an important role for TBDTs and xylan utilization systems for bacterial adaptation in the phyllosphere, oligotrophic environments and animal guts.

  2. Global transcriptional regulator TrmB family members in prokaryotes.

    Science.gov (United States)

    Kim, Minwook; Park, Soyoung; Lee, Sung-Jae

    2016-10-01

    Members of the TrmB family act as global transcriptional regulators for the activation or repression of sugar ABC transporters and central sugar metabolic pathways, including glycolytic, gluconeogenic, and other metabolic pathways, and also as chromosomal stabilizers in archaea. As a relatively newly classified transcriptional regulator family, there is limited experimental evidence for their role in Thermococcales, halophilic archaeon Halobacterium salinarum NRC1, and crenarchaea Sulfolobus strains, despite being one of the extending protein families in archaea. Recently, the protein structures of Pyrococcus furiosus TrmB and TrmBL2 were solved, and the transcriptomic data uncovered by microarray and ChIP-Seq were published. In the present review, recent evidence of the functional roles of TrmB family members in archaea is explained and extended to bacteria.

  3. Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris.

    Science.gov (United States)

    Qian, Wei; Jia, Yantao; Ren, Shuang-Xi; He, Yong-Qiang; Feng, Jia-Xun; Lu, Ling-Feng; Sun, Qihong; Ying, Ge; Tang, Dong-Jie; Tang, Hua; Wu, Wei; Hao, Pei; Wang, Lifeng; Jiang, Bo-Le; Zeng, Shenyan; Gu, Wen-Yi; Lu, Gang; Rong, Li; Tian, Yingchuan; Yao, Zhijian; Fu, Gang; Chen, Baoshan; Fang, Rongxiang; Qiang, Boqin; Chen, Zhu; Zhao, Guo-Ping; Tang, Ji-Liang; He, Chaozu

    2005-06-01

    Xanthomonas campestris pathovar campestris (Xcc) is the causative agent of crucifer black rot disease, which causes severe losses in agricultural yield world-wide. This bacterium is a model organism for studying plant-bacteria interactions. We sequenced the complete genome of Xcc 8004 (5,148,708 bp), which is highly conserved relative to that of Xcc ATCC 33913. Comparative genomics analysis indicated that, in addition to a significant genomic-scale rearrangement cross the replication axis between two IS1478 elements, loss and acquisition of blocks of genes, rather than point mutations, constitute the main genetic variation between the two Xcc strains. Screening of a high-density transposon insertional mutant library (16,512 clones) of Xcc 8004 against a host plant (Brassica oleraceae) identified 75 nonredundant, single-copy insertions in protein-coding sequences (CDSs) and intergenic regions. In addition to known virulence factors, full virulence was found to require several additional metabolic pathways and regulatory systems, such as fatty acid degradation, type IV secretion system, cell signaling, and amino acids and nucleotide metabolism. Among the identified pathogenicity-related genes, three of unknown function were found in Xcc 8004-specific chromosomal segments, revealing a direct correlation between genomic dynamics and Xcc virulence. The present combination of comparative and functional genomic analyses provides valuable information about the genetic basis of Xcc pathogenicity, which may offer novel insight toward the development of efficient methods for prevention of this important plant disease.

  4. Establishment of an inducing medium for type III effector secretion in Xanthomonas campestris pv. campestris

    Directory of Open Access Journals (Sweden)

    Guo-Feng Jiang

    2013-09-01

    Full Text Available It is well known that the type III secretion system (T3SS and type III (T3 effectors are essential for the pathogenicity of most bacterial phytopathogens and that the expression of T3SS and T3 effectors is suppressed in rich media but induced in minimal media and plants. To facilitate in-depth studies on T3SS and T3 effectors, it is crucial to establish a medium for T3 effector expression and secretion. Xanthomonas campestris pv. campestris (Xcc is a model bacterium for studying plant-pathogen interactions. To date no medium for Xcc T3 effector secretion has been defined. Here, we compared four minimal media (MME, MMX, XVM2, and XOM2 which are reported for T3 expression induction in Xanthomonas spp. and found that MME is most efficient for expression and secretion of Xcc T3 effectors. By optimization of carbon and nitrogen sources and pH value based on MME, we established XCM1 medium, which is about 3 times stronger than MME for Xcc T3 effectors secretion. We further optimized the concentration of phosphate, calcium, and magnesium in XCM1 and found that XCM1 with a lower concentration of magnesium (renamed as XCM2 is about 10 times as efficient as XCM1 (meanwhile, about 30 times stronger than MME. Thus, we established an inducing medium XCM2 which is preferred for T3 effector secretion in Xcc.

  5. Cell shape regulates global histone acetylation in human mammaryepithelial cells

    Energy Technology Data Exchange (ETDEWEB)

    Le Beyec, Johanne; Xu, Ren; Lee, Sun-Young; Nelson, Celeste M.; Rizki, Aylin; Alcaraz, Jordi; Bissell, Mina J.

    2007-02-28

    Extracellular matrix (ECM) regulates cell morphology and gene expression in vivo; these relationships are maintained in three-dimensional (3D) cultures of mammary epithelial cells. In the presence of laminin-rich ECM (lrECM), mammary epithelial cells round up and undergo global histone deacetylation, a process critical for their functional differentiation. However, it remains unclear whether lrECM-dependent cell rounding and global histone deacetylation are indeed part of a common physical-biochemical pathway. Using 3D cultures as well as nonadhesive and micropatterned substrata, here we showed that the cell 'rounding' caused by lrECM was sufficient to induce deacetylation of histones H3 and H4 in the absence of biochemical cues. Microarray and confocal analysis demonstrated that this deacetylation in 3D culture is associated with a global increase in chromatin condensation and a reduction in gene expression. Whereas cells cultured on plastic substrata formed prominent stress fibers, cells grown in 3D lrECM or on micropatterns lacked these structures. Disruption of the actin cytoskeleton with cytochalasin D phenocopied the lrECM-induced cell rounding and histone deacetylation. These results reveal a novel link between ECM-controlled cell shape and chromatin structure, and suggest that this link is mediated by changes in the actin cytoskeleton.

  6. Semi-global and global output regulation for classes of nonlinear systems

    Science.gov (United States)

    McGregor, Nathan Kristin

    Many phenomena of interest to scientists and engineers can be modeled by nonlinear systems of ordinary differential equations with inputs and outputs. The dynamics of a rocket, for example, may have input and output variables representing thrust and velocity, respectively. The problem of output regulation entails the control of a given plant in such a way that the output of the system asymptotically tracks some reference trajectory while simultaneously rejecting disturbances, where the desired trajectory and the unwanted disturbances are both generated by an autonomous and exogenous system. Achieving this objective necessitates a dynamic nonlinear controller driven only by the regulated error, since neither the state of the plant nor the exogenous signals are assumed to be available for measurement. All trajectories of the resulting closed-loop system are required to remain bounded, and the regulated error must also decay asymptotically to zero. These conditions may need to be satisfied in spite of uncertainties regarding the plant, the exosystem, or the range of allowable initial states. If the state-space representation of the plant can be expressed with finitely many variables, the system is called finite-dimensional. When a solution is sought for every fixed, compact set of initial conditions, the problem is said to be semi-global. By contrast, if a solution is desired for the entire state-space, the problem is known as global regulation. In this dissertation, rather than addressing a particular application, such as a rocket, we present results on both semi-global and global output regulation for multiple classes of finite-dimensional, nonlinear control systems. In so doing, we generalize, in whole or in part, a number of recent papers in the literature. Among the concepts shared by all of these results are the notions of input-to-state stability with respect to compact sets, nonlinear immersion of the steady-state control, the normal form of nonlinear systems

  7. [Identification and cloning of a novel gene involved in EPS biosynthesis of Xanthomonas campestris pv. campestris].

    Science.gov (United States)

    Lu, Guang-Tao; Tang, Ji-Liang; He, Yong-Qiang; Chen, Bao-Shan; Tang, Dong-Jie

    2003-11-01

    Xanthomonas campestris pv. campestris ( Xcc), causative agent of the black rot disease of cruciferous crops worldwide, produces large amount of extracellular polysaccharide( EPS), which has found wide applications in industry. In order to clone genes involved in EPS biosynthesis, Xcc wild-type strain 8004 was mutagenized with transposon Tn5gus A5, and a number of EPS-defective mutants were isolated. The Tn5gusA5 insertion sites in the mutants were analyzed by using thermal asymmetric interlaced PCR(TAIL-PCR), and the corresponding genes were identified by homology blast to the completely sequenced genome of Xcc 8004 strain. A novel gene, waxE, identified from the EPS-defective mutant 151D09, was found to be disrupted by the insertion of Tn5gusA5 in the open reading frame(ORF) with genome coordinates 4478998bp to 4479819bp.This gene showed 52% similarity to the kdtX gene of Serratia marcescens and 50% to the waaE of Klebsiella pneumoniae at amino acid level, with characteristics of glycostransferase 2 family domain. In order to identify the function of waxE gene, waxE gene deletion mutant of Xcc 8004 was constructed by gene replacement strategy in which waxE gene of genome was replaced by kanamycin resistant gene kan. The waxE gene deletion mutant strain, named Xcc 8570, was confirmed by both PCR and southern analysis. The growth rate of the deletion mutant 8570 in rich medium was not affected, but the EPS yield reduced by 35% as compared with the wildtype strain 8004. The deletion mutant could be completmented in trans with plasmid pLATC8976 harboring an intact waxE gene, and the EPS yield of the mutant was restored. The combined data showed that waxE gene involved in EPS biosynthesis in Xcc.

  8. Expression of sweet pepper Hrap gene in banana enhances resistance to Xanthomonas campestris pv. musacearum.

    Science.gov (United States)

    Tripathi, Leena; Mwaka, Henry; Tripathi, Jaindra Nath; Tushemereirwe, Wilberforce Kateera

    2010-11-01

    Banana Xanthomonas wilt (BXW), caused by the bacterium Xanthomonas campestris pv. musacearum, is the most devastating disease of banana in the Great Lakes region of Africa. The pathogen's rapid spread has threatened the livelihood of millions of Africans who rely on banana fruit for food security and income. The disease is very destructive, infecting all banana varieties, including both East African Highland bananas and exotic types of banana. In the absence of natural host plant resistance among banana cultivars, the constitutive expression of the hypersensitivity response-assisting protein (Hrap) gene from sweet pepper (Capsicum annuum) was evaluated for its ability to confer resistance to BXW. Transgenic lines expressing the Hrap gene under the regulation of the constitutive CaMV35S promoter were generated using embryogenic cell suspensions of two banana cultivars: 'Sukali Ndiizi' and 'Mpologoma'. These lines were characterized by molecular analysis, and were challenged with Xanthomonas campestris pv. musacearum to analyse the efficacy of the Hrap gene against BXW. The majority of transgenic lines (six of eight) expressing Hrap did not show any symptoms of infection after artificial inoculation of potted plants in the screenhouse, whereas control nontransgenic plants showed severe symptoms resulting in complete wilting. This study demonstrates that the constitutive expression of the sweet pepper Hrap gene in banana results in enhanced resistance to BXW. We describe the development of transgenic banana varieties resistant to BXW, which will boost the arsenal available to fight this epidemic disease and save livelihoods in the Great Lakes region of East and Central Africa.

  9. [The gene wxcA of Xanthomonas campestris pv. campestris 8004 strain involved in EPS yield].

    Science.gov (United States)

    Lu, Guang-Tao; Tang, Ji-Liang; Wei, Guang-Ning; He, Yong-Qiang; Chen, Bao-Shan

    2004-07-01

    Xanthomonas campestris pv. campestris (Xcc), the pathogenic agent of black rot disease in cruciferous plants, produces large amount of extracellular polysaccharide (EPS), which has found wide applications in industry. For the great commercial value of the xanthan gum, many of the genes involved in EPS biosynthesis have been cloned and the mechanism of EPS biosynthesis also has been studied. In order to clone genes involved in EPS biosynthesis, Xcc wild-type strain 8004 was mutagenized with transposon Tn5 gusA5, and a number of EPS-defective mutants were isolated in our previous work. The Tn5 gusA5 inserted sites of these mutants were located by using thermal asymmetric interlaced PCR, and results showed that two EPS-defective mutants were insertion mutants of the gene wxcA which involved in lipopolysaccharide (LPS) biosynthesis. The gene wxcA involved in lipopolysaccharide biosynthesis but dose not extracellular polysaccharide in others' report. wxcA::Tn5 gusA5 mutant 021C12, the polar mutant, was complemented with recombinant plasmid pLATC8570 harboring an intact wxcA gene in this work, but the yield of EPS of the wxcA::Tn5 gusA5 mutant was not restored. In order to identify the function of wxcA gene of Xcc 8004 strain, the gene wxcA was deleted by gene replacement strategy, and the no-polar mutant of wxcA was obtained. DeltawxcA mutant strain, named Xcc 8570, was confirmed by using both PCR and southern analysis. Beside the LPS biosynthesis of deltawxcA mutant was affected, The EPS yield of deltawxcA mutant strain reduced by 50% as compared with the wild-type strain 8004. DeltawxcA mutant could be complemented in trans with the intact wxcA gene, and the EPS yield of the mutant was restored. The combined data showed that wxcA gene not only involved in LPS biosynthesis but also EPS yield in Xcc 8004 strain.

  10. Xanthan production by Xanthomonas campestris using whey permeate medium.

    Science.gov (United States)

    Savvides, A L; Katsifas, E A; Hatzinikolaou, D G; Karagouni, A D

    2012-08-01

    Xanthan gum is a polysaccharide that is widely used as stabilizer and thickener with many industrial applications in food industry. Our aim was to estimate the ability of Xanthomonas campestris ATCC 13951 for the production of xanthan gum by using whey as a growth medium, a by-product of dairy industry. X. campestris ATCC 13951 has been studied in batch cultures using a complex medium for the determination of the optimal concentration of glucose, galactose and lactose. In addition, whey was used under various treatment procedures (de-proteinated, partially hydrolyzed by β-lactamase and partially hydrolyzed and de-proteinated) as culture medium, to study the production of xanthan in a 2 l bioreactor with constant stirring and aeration. A production of 28 g/l was obtained when partially hydrolysed β-lactamase was used, which proved to be one of the highest xanthan gum production reported so far. At the same time, an effort has been made for the control and selection of the most appropriate procedure for the preservation of the strain and its use as inoculant in batch cultures, without loss of its viability and its capability of xanthan gum production. The pre-treatment of whey (whey permeate medium hydrolyzed, WPH) was very important for the production of xanthan by the strain X. campestris ATCC 13951 during batch culture conditions in a 2 l bioreactor. Preservation methods such as lyophilization, cryopreservation at various glycerol solution and temperatures have been examined. The results indicated that the best preservation method for the producing strain X. campestris ATCC 13951 was the lyophilization. Taking into account that whey permeate is a low cost by-product of the dairy industry, the production of xanthan achieved under the studied conditions was considered very promising for industrial application.

  11. Global Financial Regulations:An Antidote to Economic Predicament

    Institute of Scientific and Technical Information of China (English)

    BIN; ZHANG

    2014-01-01

    Due to the lack of public order in the international financial arena, asset bubbles and resource misallocations persisted over a long period of time and resulted in global financial crisis in 2008. Global financial rules, which can take on a role like that of WTO in the international trade, are urgently needed for global economic recovery. They will balance the pressure of economic restructuring between large and small countries, and push forward some countries’ domestic reforms which may hardly be implemented due to domestic politics.

  12. Production and cytogenetics of Brassica campestris-alboglabra chromosome addition lines

    DEFF Research Database (Denmark)

    Chen, B.Y.; Cheng, B.F.; Bagger Jørgensen, Rikke;

    1997-01-01

    Four different Brassica campestris-alboglabra monosomic addition lines (AA + 1 chromosome from C, 2n = 21) were obtained after consecutive backcrosses between resynthesized B. napus (AACC, 2n = 38) and the parental B. campestris (AA, 2n = 20) accession. The alien chromosomes of B. alboglabra (CC,...

  13. Role of Glycolytic Intermediates in Global Regulation and Signal Transduction. Final Report

    Energy Technology Data Exchange (ETDEWEB)

    Liao, J.C.

    2000-05-08

    The goal of this project is to determine the role of glycolytic intermediates in regulation of cell physiology. It is known that many glycolytic intermediates are involved in regulation of enzyme activities at the kinetic level. However, little is known regarding the role of these metabolites in global regulation and signal transduction. This project aims to investigate the role of glycolytic intermediates in the regulation of gene expression.

  14. Improvement of in vitro embryo maturation, plantlet regeneration and transformation efficiency from alfalfa (Medicago sativa L.) somatic embryos using Cuscuta campestris extract.

    Science.gov (United States)

    Amini, Massoume; Deljou, Ali; Nabiabad, Haidar Saify

    2016-07-01

    Developmental deficiency of somatic embryos and regeneration to plantlets, especially in the case of transformation, are major problems of somatic embryo regeneration in alfalfa. One of the ways to overcome these problems is the use of natural plant regulators and nutrients in the culture medium of somatic embryos. For investigating the influence of Cuscuta campestris extract on the efficiency of plant regeneration and transformation, chimeric tissue type plasminogen activator was transferred to explants using Agrobacterium tumefaciens, and transgenic plants were recovered using medium supplemented with different concentration of the extract. Transgenic plants were analyzed by PCR and RT-PCR. Somatic embryos of Medicago sativa L. developed into plantlets at high frequency level (52 %) in the maturation medium supplemented with 50 mg 1(-1)C. campestris extract as compared to the medium without extract (26 %). Transformation efficiency was 29.3 and 15.2 % for medium supplemented with dodder extract and without the extract, respectively. HPLC and GC/MS analysis of the extract indicated high level of ABA and some compounds such as Phytol, which can affect the somatic embryo maturation. The antibacterial assay showed that the extract was effective against some strains of A. tumefaciens. These results have provided a scientific basis for using of C. campestris extract as a good natural source of antimicrobial agents and plant growth regulator as well, that can be used in tissue culture of transgenic plants.

  15. Crp Is a Global Regulator of Antibiotic Production in Streptomyces

    OpenAIRE

    Gao, Chan; Hindra,; Mulder, David; Yin, Charles; Elliot, Marie A.

    2012-01-01

    ABSTRACT Cyclic AMP receptor protein (Crp) is a transcription regulator controlling diverse cellular processes in many bacteria. In Streptomyces coelicolor, it is well established that Crp plays a critical role in spore germination and colony development. Here, we demonstrate that Crp is a key regulator of secondary metabolism and antibiotic production in S. coelicolor and show that it may additionally coordinate precursor flux from primary to secondary metabolism. We found that crp deletion ...

  16. Semi-global output regulation for linear systems with input saturation by composite nonlinear feedback control

    Science.gov (United States)

    Wang, Chongwen; Yu, Xiao; Lan, Weiyao

    2014-10-01

    To improve transient performance of output response, this paper applies composite nonlinear feedback (CNF) control technique to investigate semi-global output regulation problems for linear systems with input saturation. Based on a linear state feedback control law for a semi-global output regulation problem, a state feedback CNF control law is constructed by adding a nonlinear feedback part. The extra nonlinear feedback part can be applied to improve the transient performance of the closed-loop system. Moreover, an observer is designed to construct an output feedback CNF control law that also solves the semi-global output regulation problem. The sufficient solvability condition of the semi-global output regulation problem by CNF control is the same as that by linear control, but the CNF control technique can improve the transient performance. The effectiveness of the proposed method is illustrated by a disturbance rejection problem of a translational oscillator with rotational actuator system.

  17. Insights into the global regulation of anaerobic metabolism for improved biohydrogen production.

    Science.gov (United States)

    Lu, Yuan; Zhao, Hongxin; Zhang, Chong; Xing, Xin-Hui

    2016-01-01

    To improve the biohydrogen yield in bacterial dark fermentation, a new approach of global anaerobic regulation was introduced. Two cellular global regulators FNR and NarP were overexpressed in two model organisms: facultatively anaerobic Enterobacter aerogenes (Ea) and strictly anaerobic Clostridium paraputrificum (Cp). The overexpression of FNR and NarP greatly altered anaerobic metabolism and increased the hydrogen yield by 40%. Metabolic analysis showed that the global regulation caused more reducing environment inside the cell. To get a thorough understanding of the global metabolic regulation, more genes (fdhF, fhlA, ppk, Cb-fdh1, and Sc-fdh1) were overexpressed in different Ea and Cp mutants. For the first time, it demonstrated that there were approximately linear relationships between the relative change of hydrogen yield and the relative change of NADH yield or ATP yield. It implied that cellular reducing power and energy level played vital roles in the biohydrogen production.

  18. Composition and functional properties of Lupinus campestris protein isolates.

    Science.gov (United States)

    Rodríguez-Ambriz, S L; Martínez-Ayala, A L; Millán, F; Dávila-Ortíz, G

    2005-09-01

    Protein isolates from L. campestris and soybean seeds were prepared using isoelectric precipitation (PI) and micellization (MI) procedures. The amount of protein recovered was considerably higher with the isoelectric precipitation than with the micellization procedure (60% and 30%, respectively). Protein contents were higher than 90% in protein isolates. Antinutritional factors content (alkaloids, lectins, and tannins) were reduced to innocuous levels after protein isolate preparation. Minimum protein solubility for the precipitated lupin protein isolate (LPI) was at pH 4.0, and between pH 4 and 6 for the micellized lupin protein isolate (LMI), increasing at both extremes of the pH scale. Water absorption for the LMI was 1.3 ml/g of protein and its oil absorption 2.2 ml/g of protein. The LPI had 1.7 ml/g of protein in both water and oil absorption. Foaming capacity and stability was pH-dependent. Foaming capacity was higher at pH 2 and lower near the protein isoelectric points. Minimum protein concentration for gelation in LMI was 8% w/v at pH 4, while for LPI was 6% at pH 4 and 6. Amino acid composition in L. campestris flour and protein isolates was high in lysine and low in methionine. Most of the essential amino acids in lupin protein isolates were at acceptable levels compared to a reference pattern for infants and adults. The electrophoretic pattern of both protein isolates showed three bands with different mobilities, suggesting that the protein fractions belong to alpha-conglutin (11S-like protein), beta-conglutin (7S-like protein) and gamma-conglutin. It is proven that some of the functional properties of L. campestris protein isolates are similar to those soybean protein isolates recovered under equal conditions.

  19. Global regulation of robots using only position measurements

    NARCIS (Netherlands)

    Berghuis, Harry; Nijmeijer, Henk

    1993-01-01

    In this note we propose a simple solution to the regulation problem of rigid robots based on the availability of only joint position measurements. The controller consists of two parts: (1) a gravitation compensation, (2) a linear dynamic first-order compensator. The gravitation compensation part can

  20. Effect of different fertilizers on nitrogen isotope composition and nitrate content of Brassica campestris.

    Science.gov (United States)

    Yuan, Yuwei; Zhao, Ming; Zhang, Zhiheng; Chen, Tianjin; Yang, Guiling; Wang, Qiang

    2012-02-15

    The effect of different fertilizers on the δ(15)N value, nitrate concentration, and nitrate reductase activity of Brassica campestris and the δ(15)N value of soil has been investigated through a pot experiment. The δ(15)N mean value of B. campestris at the seedling stage observed in the composted chicken treatment (+8.65‰) was higher than that of chemical fertilizer treatment (+5.73‰), compost-chemical fertilizer (+7.53‰), and control check treatment (+7.86‰). There were significantly different δ(15)N values (p fertilizer treatment. The similar results were also found at the middle stage and the terminal stage. The variation of δ(15)N value in soil for different treatments was smaller than that of B. campestris, which was +6.71-+8.12‰, +6.83-+8.24‰, and +6.85-8.4‰, respectively, at seedling stage, middle stage, and terminal stage. With the growth of B. campestris, the nitrate content decreased in all treatments, and the nitrate reductase activity in B. campestris increased except for the CK. Results suggested that the δ(15)N values of B. campestris and soil were more effected by the fertilizer than by the dose level, and the δ(15)N value analysis could be used as a tool to discriminate the B. campestris cultivated with composted manure or chemical fertilizer.

  1. Meio semi-seletivo para isolamento de Xanthomonas campestris pv. viticola

    OpenAIRE

    2006-01-01

    O cancro bacteriano causado por Xanthomonas campestris pv. viticola é a fitobacteriose mais importante da videira no Submédio São Francisco. O isolamento de X. campestris pv. viticola de tecidos vegetais infectados é dificultado pela presença de contaminantes bacterianos, entre os quais Microbacterium barkeri. Objetivando-se a formulação de meio de cultura semi-seletivo, 22 isolados de X. campestris pv. viticola foram testados com relação a 30 antibióticos. O meio semi-seletivo NYDAM (extrato...

  2. Helping enhances productivity in campo flicker ( Colaptes campestris) cooperative groups

    Science.gov (United States)

    Dias, Raphael Igor; Webster, Michael S.; Macedo, Regina H.

    2015-06-01

    Reproductive adults in many bird species are assisted by non-breeding auxiliary helpers at the nest, yet the impact of auxiliaries on reproduction is variable and not always obvious. In this study, we tested Hamilton's rule and evaluated the effect of auxiliaries on productivity in the facultative cooperative breeder campo flicker ( Colaptes campestris campestris). Campo flickers have a variable mating system, with some groups having auxiliaries and others lacking them (i.e., unassisted pairs). Most auxiliaries are closely related to the breeding pair (primary auxiliaries), but some auxiliaries (secondary auxiliaries) are unrelated females that joined established groups. We found no effect of breeder quality (body condition) or territory quality (food availability) on group productivity, but the presence of auxiliaries increased the number of fledglings produced relative to unassisted pairs. Nonetheless, the indirect benefit of helping was small and did not outweigh the costs of delayed breeding and so seemed insufficient to explain the evolution of cooperative breeding in campo flickers. We concluded that some ecological constraints must limit dispersal or independent breeding, making staying in the group a "best-of-a-bad-job" situation for auxiliaries.

  3. Global regulation of nucleotide biosynthetic genes by c-Myc.

    Directory of Open Access Journals (Sweden)

    Yen-Chun Liu

    Full Text Available BACKGROUND: The c-Myc transcription factor is a master regulator and integrates cell proliferation, cell growth and metabolism through activating thousands of target genes. Our identification of direct c-Myc target genes by chromatin immunoprecipitation (ChIP coupled with pair-end ditag sequencing analysis (ChIP-PET revealed that nucleotide metabolic genes are enriched among c-Myc targets, but the role of Myc in regulating nucleotide metabolic genes has not been comprehensively delineated. METHODOLOGY/PRINCIPAL FINDINGS: Here, we report that the majority of genes in human purine and pyrimidine biosynthesis pathway were induced and directly bound by c-Myc in the P493-6 human Burkitt's lymphoma model cell line. The majority of these genes were also responsive to the ligand-activated Myc-estrogen receptor fusion protein, Myc-ER, in a Myc null rat fibroblast cell line, HO.15 MYC-ER. Furthermore, these targets are also responsive to Myc activation in transgenic mouse livers in vivo. To determine the functional significance of c-Myc regulation of nucleotide metabolism, we sought to determine the effect of loss of function of direct Myc targets inosine monophosphate dehydrogenases (IMPDH1 and IMPDH2 on c-Myc-induced cell growth and proliferation. In this regard, we used a specific IMPDH inhibitor mycophenolic acid (MPA and found that MPA dramatically inhibits c-Myc-induced P493-6 cell proliferation through S-phase arrest and apoptosis. CONCLUSIONS/SIGNIFICANCE: Taken together, these results demonstrate the direct induction of nucleotide metabolic genes by c-Myc in multiple systems. Our finding of an S-phase arrest in cells with diminished IMPDH activity suggests that nucleotide pool balance is essential for c-Myc's orchestration of DNA replication, such that uncoupling of these two processes create DNA replication stress and apoptosis.

  4. Crp is a global regulator of antibiotic production in streptomyces.

    Science.gov (United States)

    Gao, Chan; Hindra; Mulder, David; Yin, Charles; Elliot, Marie A

    2012-12-11

    Cyclic AMP receptor protein (Crp) is a transcription regulator controlling diverse cellular processes in many bacteria. In Streptomyces coelicolor, it is well established that Crp plays a critical role in spore germination and colony development. Here, we demonstrate that Crp is a key regulator of secondary metabolism and antibiotic production in S. coelicolor and show that it may additionally coordinate precursor flux from primary to secondary metabolism. We found that crp deletion adversely affected the synthesis of three well-characterized antibiotics in S. coelicolor: actinorhodin (Act), undecylprodigiosin (Red), and calcium-dependent antibiotic (CDA). Using chromatin immunoprecipitation-microarray (ChIP-chip) assays, we determined that eight (out of 22) secondary metabolic clusters encoded by S. coelicolor contained Crp-associated sites. We followed the effect of Crp induction using transcription profiling analyses and found secondary metabolic genes to be significantly affected: included in this Crp-dependent group were genes from six of the clusters identified in the ChIP-chip experiments. Overexpressing Crp in a panel of Streptomyces species led to enhanced antibiotic synthesis and new metabolite production, suggesting that Crp control over secondary metabolism is broadly conserved in the streptomycetes and that Crp overexpression could serve as a powerful tool for unlocking the chemical potential of these organisms. IMPORTANCE Streptomyces produces a remarkably diverse array of secondary metabolites, including many antibiotics. In recent years, genome sequencing has revealed that these products represent only a small proportion of the total secondary metabolite potential of Streptomyces. There is, therefore, considerable interest in discovering ways to stimulate the production of new metabolites. Here, we show that Crp (the classical regulator of carbon catabolite repression in Escherichia coli) is a master regulator of secondary metabolism in Streptomyces

  5. Glyceraldehyde-3-phosphate dehydrogenase of Xanthomonas campestris pv. campestris is required for extracellular polysaccharide production and full virulence.

    Science.gov (United States)

    Lu, Guang-Tao; Xie, Jia-Ri; Chen, Lei; Hu, Jiang-Ru; An, Shi-Qi; Su, Hui-Zhao; Feng, Jia-Xun; He, Yong-Qiang; Jiang, Bo-Le; Tang, Dong-Jie; Tang, Ji-Liang

    2009-05-01

    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glucose catabolism, converting glyceraldehyde 3-phosphates to 1,3-bisphosphoglycerates. Open reading frame (ORF) XC_0972 in the genome of Xanthomonas campestris pv. campestris (Xcc) strain 8004 is the only ORF in this strain annotated to encode a GAPDH. In this work, we have demonstrated genetically that this ORF encodes a unique GAPDH in Xcc strain 8004, which seems to be constitutively expressed. A GAPDH-deficient mutant could still grow in medium with glucose or other sugars as the sole carbon source, and no phosphofructokinase activity was detectable in strain 8004. These facts suggest that Xcc may employ the Entner-Doudoroff pathway, but not glycolysis, to utilize glucose. The mutant could not utilize pyruvate as sole carbon source, whereas the wild-type could, implying that the GAPDH of Xcc is involved in gluconeogenesis. Furthermore, inactivation of the Xcc GAPDH resulted in impairment of bacterial growth and virulence in the host plant, and reduction of intracellular ATP and extracellular polysaccharide (EPS). This reveals that GAPDH is required for EPS production and full pathogenicity of Xcc.

  6. Meio semi-seletivo para isolamento de Xanthomonas campestris pv. viticola

    Directory of Open Access Journals (Sweden)

    Peixoto Ana Rosa

    2006-01-01

    Full Text Available O cancro bacteriano causado por Xanthomonas campestris pv. viticola é a fitobacteriose mais importante da videira no Submédio São Francisco. O isolamento de X. campestris pv. viticola de tecidos vegetais infectados é dificultado pela presença de contaminantes bacterianos, entre os quais Microbacterium barkeri. Objetivando-se a formulação de meio de cultura semi-seletivo, 22 isolados de X. campestris pv. viticola foram testados com relação a 30 antibióticos. O meio semi-seletivo NYDAM (extrato de carne 3, peptona 5, glicose 10, extrato de levedura 5, ágar 18 e ampicilina 0,1 em g L-1 inibiu M. barkeri e bactérias fitopatogênicas podendo ser utilizado para isolar X. campestris pv. viticola de hospedeiros com infecção natural em campo.

  7. [Evaluation of culture media for detecting the starch hydrolysis reaction in pathovars of Xanthomonas campestris].

    Science.gov (United States)

    Alippi, A M

    1991-01-01

    Sixty strains of different pathovars of Xanthomonas campestris have been tested for the evaluation of various starch agars and compounds of starch degradation on six media: soluble starch, potato insoluble starch, corn insoluble starch, potato amylopectin, corn amylopectin and potato amylose. The purpose of the present investigation was the selection of the most suitable medium for the visualization of the starch hydrolysis test, presenting this reaction as a distinct character between pathovars of the Xanthomonas campestris group. From 60 strains tested, 74% gave positive reactions. Pathovars holcicola, pelargonii, pruni and vitians were negative. Regarding X. campestris pv. vesicatoria cultures, results were variable. Potato and corn insoluble starch agars were the most suitable media for the visualization of the starch hydrolysis reaction and at the same time the most appropriate for direct isolation. Differentiation at species level could be practicable, but within the Xanthomonas campestris group, variation amongst pathovars suggest the unsuitability of the test in spite of the high percentage of positive reactions.

  8. Production of Hesperetin Glycosides by Xanthomonas campestris and Cyclodextrin Glucanotransferase and Their Anti-allergic Activities

    Directory of Open Access Journals (Sweden)

    Hiroki Hamada

    2010-02-01

    Full Text Available The production of hesperetin glycosides was investigated using glycosylation with Xanthomonas campestris and cyclodextrin glucanotransferase (CGTase. X. campestris glucosylated hesperetin to its 3'-, 5-, and 7-O-glucosides, and CGTase converted hesperetin glucosides into the corresponding maltosides. The resulting 7-O-glucoside and 7-O-maltoside of hesperetin showed inhibitory effects on IgE antibody production and on O2- generation from rat neutrophils.

  9. The CharXive Challenge. Regulation of global carbon cycles by vegetation fires

    CERN Document Server

    Ball, R

    2010-01-01

    It is an open, but not unanswerable, question as to how much atmospheric CO2 is sequestered globally by vegetation fires. In this work I conceptualise the question in terms of the general CharXive Challenge, discuss a mechanism by which thermoconversion of biomass may regulate the global distribution of carbon between reservoirs, show how suppression of vegetation fires by human activities may increase the fraction of carbon in the atmospheric pool, and pose three specific CharXive Challenges of crucial strategic significance to our management of global carbon cycles.

  10. Antagonism of yeasts to Xanthomonas campestris pv. campestris on cabbage phylloplane in field Antagonismo de leveduras a Xanthomonas campestris pv. campestris no filoplano de repolho em condições de campo

    Directory of Open Access Journals (Sweden)

    Sayonara M.P. Assis

    1999-07-01

    Full Text Available Twenty yeast isolates, obtained from cabbage phylloplane, were evaluated for antagonistic activity against Xanthomonas campestris pv. campestris, in field. Plants of cabbage cv. Midori were pulverized simultaneously with suspensions of antagonists and pathogen. After 10 days, plants were evaluated through percentage of foliar area with lesions. Percentage of disease severity reduction (DSR% was also calculated. Yeast isolates LR32, LR42 and LR19 showed, respectively, 72, 75 and 79% of DSR. These antagonists were tested in seven different application periods in relation to pathogen inoculation (T1=4 d before; T2=simultaneously; T3=4 d after; T4=4 d before + simultaneously; T5=4 d after + simultaneously; T6=4 d before + 4 d after; T7=4 d before + simultaneously + 4 d after. The highest DSRs were showed by LR42 (71%, LR42 (67%, LR35 (69% and LR19 (68% in the treatments T7, T4, T5 and T6, which significantly differed from the others. The same yeast antagonists were also tested for black rot control using different cabbage cultivars (Fuyutoyo, Master-325, Matsukaze, Midori, Sekai I and Red Winner. The DSRs varied from 58 to 61%, and there was no significant difference among cultivars.Vinte isolados de leveduras, obtidos a partir do filoplano de repolho foram avaliados pela atividade antagônica contra Xanthomonas campestris pv. campestris, em condições de campo. Plantas de repolho cv. Midori foram pulverizadas simultaneamente com suspensões do antagonista e do patógeno. Após 10 dias, as plantas foram avaliadas através da porcentagem de área foliar infectada. A porcentagem de redução da severidade da doença (DSR%, também foi calculada. Os isolados de leveduras LR32, LR42 e LR19 apresentaram, respectivamente, 72, 75 e 79% de DSR. Estes isolados foram testados em sete diferentes períodos de aplicação dos antagonistas em relação a inoculação do patógeno. (T1=4d antes; T2=simultaneamente; T3=4 d após; T4=4 d antes + simultaneamente; T5

  11. Tranformasi Fragmen Dna Kromosom Xanthomonas Campestris ke dalam Escherichia Coli

    Directory of Open Access Journals (Sweden)

    Wibowo Mangunwardoyo

    2002-04-01

    Full Text Available Research on DNA transformation of Xanthomonas campestris into Escherichia coli DH5αα using plasmid vector Escherichia coli (pUC19. was carried out. DNA chromosome was isolated using CTAB method, alkali lysis method was used to isolate DNA plasmid. Both of DNA plasmid and chromosome were digested using restriction enzyme EcoRI. Competent cell was prepared with CaCl2 and heat shock method for transformation procedure. The result revealed transformation obtain 5 white colonies, with transformation frequency was 1,22 x 10-8 colony/competent cell. Electrophoresis analysis showed the DNA fragment (insert in range 0.5 – 7,5 kb. Further research should be carried out to prepare the genomic library to obtain better result of transformant.

  12. Quantitative analysis of proteome and lipidome dynamics reveals functional regulation of global lipid metabolism

    DEFF Research Database (Denmark)

    Casanovas, Albert; Sprenger, Richard R; Tarasov, Kirill

    2015-01-01

    architecture and processes during physiological adaptations in yeast. Our results reveal that activation of cardiolipin synthesis and remodeling supports mitochondrial biogenesis in the transition from fermentative to respiratory metabolism, that down-regulation of de novo sterol synthesis machinery prompts......Elucidating how and to what extent lipid metabolism is remodeled under changing conditions is essential for understanding cellular physiology. Here, we analyzed proteome and lipidome dynamics to investigate how regulation of lipid metabolism at the global scale supports remodeling of cellular...

  13. Aflatoxin regulations and global pistachio trade: insights from social network analysis.

    Science.gov (United States)

    Bui-Klimke, Travis R; Guclu, Hasan; Kensler, Thomas W; Yuan, Jian-Min; Wu, Felicia

    2014-01-01

    Aflatoxins, carcinogenic toxins produced by Aspergillus fungi, contaminate maize, peanuts, and tree nuts in many regions of the world. Pistachios are the main source of human dietary aflatoxins from tree nuts worldwide. Over 120 countries have regulations for maximum allowable aflatoxin levels in food commodities. We developed social network models to analyze the association between nations' aflatoxin regulations and global trade patterns of pistachios from 1996-2010. The main pistachio producing countries are Iran and the United States (US), which together contribute to nearly 75% of the total global pistachio market. Over this time period, during which many nations developed or changed their aflatoxin regulations in pistachios, global pistachio trade patterns changed; with the US increasingly exporting to countries with stricter aflatoxin standards. The US pistachio crop has had consistently lower levels of aflatoxin than the Iranian crop over this same time period. As similar trading patterns have also been documented in maize, public health may be affected if countries without aflatoxin regulations, or with more relaxed regulations, continually import crops with higher aflatoxin contamination. Unlike the previous studies on maize, this analysis includes a dynamic element, examining how trade patterns change over time with introduction or adjustment of aflatoxin regulations.

  14. Aflatoxin Regulations and Global Pistachio Trade: Insights from Social Network Analysis

    Science.gov (United States)

    Bui-Klimke, Travis R.; Guclu, Hasan; Kensler, Thomas W.; Yuan, Jian-Min; Wu, Felicia

    2014-01-01

    Aflatoxins, carcinogenic toxins produced by Aspergillus fungi, contaminate maize, peanuts, and tree nuts in many regions of the world. Pistachios are the main source of human dietary aflatoxins from tree nuts worldwide. Over 120 countries have regulations for maximum allowable aflatoxin levels in food commodities. We developed social network models to analyze the association between nations’ aflatoxin regulations and global trade patterns of pistachios from 1996–2010. The main pistachio producing countries are Iran and the United States (US), which together contribute to nearly 75% of the total global pistachio market. Over this time period, during which many nations developed or changed their aflatoxin regulations in pistachios, global pistachio trade patterns changed; with the US increasingly exporting to countries with stricter aflatoxin standards. The US pistachio crop has had consistently lower levels of aflatoxin than the Iranian crop over this same time period. As similar trading patterns have also been documented in maize, public health may be affected if countries without aflatoxin regulations, or with more relaxed regulations, continually import crops with higher aflatoxin contamination. Unlike the previous studies on maize, this analysis includes a dynamic element, examining how trade patterns change over time with introduction or adjustment of aflatoxin regulations. PMID:24670581

  15. Evolution of Enzymatic Activities in the Enolase Superfamily: L-Fuconate Dehydratase from Xanthomonas campestris

    Energy Technology Data Exchange (ETDEWEB)

    Yew,W.; Fedorov, A.; Fedorov, E.; Rakus, J.; Pierce, R.; Almo, S.; Gerlt, J.

    2006-01-01

    Many members of the mechanistically diverse enolase superfamily have unknown functions. In this report the authors use both genome (operon) context and screening of a library of acid sugars to assign the L-fuconate dehydratase (FucD) function to a member of the mandelate racemase (MR) subgroup of the superfamily encoded by the Xanthomonas campestris pv. campestris str. ATCC 33913 genome (GI: 21233491). Orthologues of FucD are found in both bacteria and eukaryotes, the latter including the rTS beta protein in Homo sapiens that has been implicated in regulating thymidylate synthase activity. As suggested by sequence alignments and confirmed by high-resolution structures in the presence of active site ligands, FucD and MR share the same active site motif of functional groups: three carboxylate ligands for the essential Mg2+ located at the ends of th third, fourth, and fifth-strands in the (/)7-barrel domain (Asp 248, Glu 274, and Glu 301, respectively), a Lys-x-Lys motif at the end of the second-strand (Lys 218 and Lys 220), a His-Asp dyad at the end of the seventh and sixth-strands (His 351 and Asp 324, respectively), and a Glue at the end of the eighth-strand (Glu 382). The mechanism of the FucD reaction involves initial abstraction of the 2-proton by Lys 220, acid catalysis of the vinylogous-elimination of the 3-OH group by His 351, and stereospecific ketonization of the resulting 2-keto-3-deoxy-L-fuconate product. Screening of the library of acid sugars revealed substrate and functional promiscuity: In addition to L-fuconate, FucD also catalyzes the dehydration of L-galactonate, D-arabinonate, D-altronate, L-talonate, and D-ribonate. The dehydrations of L-fuconate, L-galactonate, and D-arabinonate are initiated by abstraction of the 2-protons by Lys 220. The dehydrations of L-talonate and D-ribonate are initiated by abstraction of the 2-protons by His 351; however, protonation of the enediolate intermediates by the conjugate acid of Lys 220 yields L

  16. Two isocitrate dehydrogenases from a plant pathogen Xanthomonas campestris pv. campestris 8004. Bioinformatic analysis, enzymatic characterization, and implication in virulence.

    Science.gov (United States)

    Lv, Changqi; Wang, Peng; Wang, Wencai; Su, Ruirui; Ge, Yadong; Zhu, Youming; Zhu, Guoping

    2016-09-01

    Isocitrate dehydrogenase (IDH) is a key enzyme in the tricarboxylate (TCA) cycle, which may play an important role in the virulence of pathogenic bacteria. Here, two structurally different IDHs from a plant pathogen Xanthomonas campestris pv. campestris 8004 (XccIDH1 and XccIDH2) were characterized in detail. The recombinant XccIDH1 forms homodimer in solution, while the recombinant XccIDH2 is a typical monomer. Phylogenetic analysis showed that XccIDH1 belongs to the type I IDH subfamily and XccIDH2 groups into the monomeric IDH clade. Kinetic characterization demonstrated that XccIDH1's specificity towards NAD(+) was 110-fold greater than NADP(+) , while XccIDH2's specificity towards NADP(+) was 353-fold greater than NAD(+) . The putative coenzyme discriminating amino acids (Asp268, Ile269 and Ala275 for XccIDH1, and Lys589, His590 and Arg601 for XccIDH2) were studied by site-directed mutagenesis. The coenzyme specificities of the two mutants, mXccIDH1 and mXccIDH2, were completely reversed from NAD(+) to NADP(+) , and NADP(+) to NAD(+) , respectively. Furthermore, Ser80 of XccIDH1, and Lys256 and Tyr421 of XccIDH2, were the determinants for the substrate binding. The detailed biochemical properties, such as optimal pH and temperature, thermostability, and metal ion effects, of XccIDH1 and XccIDH2 were further investigated. The possibility of taking the two IDHs into consideration as the targets for drug development to control the plant diseases caused by Xcc 8004 were described and discussed thoroughly.

  17. The role of glucose kinase in carbohydrate utilization and extracellular polysaccharide production in Xanthomonas campestris pathovar campestris.

    Science.gov (United States)

    Lu, Guang-Tao; Yang, Zheng-Jiu; Peng, Fang-Yin; Tan, Yi-Ning; Tang, Yong-Qin; Feng, Jia-Xun; Tang, Dong-Jie; He, Yong-Qiang; Tang, Ji-Liang

    2007-12-01

    The genome of the Xanthomonas campestris pathovar campestris (Xcc) strain 8004 encodes three uncharacterized proteins, XC1166, XC1223 and XC1976, annotated as glucose kinase (Glk) by bioinformatic studies. Here we have investigated the biochemical characteristics and physiological roles of these proteins with particular reference to the synthesis of extracellular polysaccharide (EPS). XC1166, XC1223 and XC1976 were overexpressed as fusion proteins with a His(6) affinity tag and purified by nickel affinity chromatography. The standard Glk activity assay revealed that all three proteins possessed apparent Glk activity, with XC1976-His(6) being the most active; the specific activity values were 1.16x10(6) U mg(-1) for XC1166-His(6), 4.36x10(7) U mg(-1) for XC1223-His(6) and 2.63x10(8) U mg(-1) for XC1976-His(6). TLC analysis showed, however, that only XC1976-His(6) could phosphorylate glucose. Insertional mutants of XC1166, XC1223 and XC1976 were generated using the suicide plasmid pK18mob. Although mutant strains with insertions in XC1166 or XC1223 had Glk activity similar to that of the wild-type strain, the XC1976 mutant had only about 6% of the wild-type activity. Mutation in XC1976 had complex effects on EPS production. In media containing arabinose, glucose, galactose, sucrose or maltose, the XC1976 mutant produced about 40-75% of the wild-type level of EPS, whereas in medium containing fructose, the mutant showed a 30% increase in EPS production compared to the wild-type strain. The XC1976 mutant also showed attenuated virulence on the host plant Chinese radish (Raphanus sativus). The results indicate that XC1976 has the most significant role for the parameters tested.

  18. Fairness through regulation? Reflections on a cosmopolitan approach to global finance

    Directory of Open Access Journals (Sweden)

    Marta Božina Beroš

    2013-11-01

    Full Text Available In the aftermath of the last financial crisis a strong message prevails that ‘something’ has to be changed in the manner global finance is governed. What exactly this ‘something’ entails and what could constitute the ‘common ground’ of anticipated change is more difficult to determine. Many envisage future improvements of global financial governance by evoking deliberative democracy, political equality and cosmopolitanism. As financial regulation is the main instrument through which global finance is shaped and governed nowadays, these principles should then be transmitted to regulatory arrangements. This paper focuses on a new conceptual approach to regulatory and governance issues in global finance, by employing the philosophical idea of cosmopolitanism. It argues that although as a concept, cosmopolitanism cannot mitigate all the flaws attributed to contemporary finance, its development and extension to international financial regulation that is promulgated by institutions of the global financial system, would represent a worthwhile endeavour in making global finance more accountable and just in the eyes of many.

  19. Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p

    DEFF Research Database (Denmark)

    Moxley, Joel F.; Jewett, Michael Christopher; Antoniewicz, Maciek R.

    2009-01-01

    Genome sequencing dramatically increased our ability to understand cellular response to perturbation. Integrating system-wide measurements such as gene expression with networks of protein protein interactions and transcription factor binding revealed critical insights into cellular behavior. Howe...... that an integrated approach focusing on metabolic measurements will facilitate construction of more realistic models of cellular regulation for understanding diseases and constructing strains for industrial applications.......RNA and metabolic flux data that combines information from both interaction network models and flux determination models. We started by quantifying 5,764 mRNAs, 54 metabolites, and 83 experimental C-13-based reaction fluxes in continuous cultures of yeast under stress in the absence or presence of global regulator...... of metabolic flux (i.e., use of different reaction pathways) by transcriptional regulation and metabolite interaction density (i.e., level of pairwise metabolite-protein interactions) as a key biosynthetic control determinant. Furthermore, this model predicted flux rewiring in studies of follow...

  20. Global Change and Human Consumption of Freshwater Driven by Flow Regulation and Irrigation

    Science.gov (United States)

    Jaramillo, F.; Destouni, G.

    2015-12-01

    Recent studies show major uncertainties about the magnitude and key drivers of global freshwater change, historically and projected for the future. The tackling of these uncertainties should be a societal priority to understand: 1) the role of human change drivers for freshwater availability changes, 2) the global water footprint of humanity and 3) the relation of human freshwater consumption to a proposed planetary boundary. This study analyses worldwide hydroclimatic changes, as observed during 1900-2009 in 99 large hydrological basins across all continents. We test whether global freshwater change may be driven by major developments of flow regulation and irrigation (FRI) occurring over this period. Independent categorization of the variability of FRI-impact strength among the studied basins is used to identify statistical basin differences in occurrence and strength of characteristic hydroclimatic signals of FRI. Our results show dominant signals of increasing relative evapotranspiration in basins affected by flow regulation and/or irrigation, in conjunction with decreasing relative intra-annual variability of runoff in basins affected by flow regulation. The FRI-related increase in relative evapotranspiration implies an increase of 4,688 km3/yr in global annual average water flow from land to the atmosphere. This observation-based estimate extends considerably the upper quantification limits of both FRI-driven and total global human consumption of freshwater, as well as the global water footprint of humanity. Our worldwide analysis shows clear FRI-related change signals emerging directly from observations, in spite of large change variability among basins and many other coexisting change drivers in both the atmosphere and the landscape. These results highlight the importance of considering local water use as a key change driver in Earth system studies and modelling, of relevance for global change and human consumption of freshwater.

  1. Tri6 is a global transcription regulator in the phytopathogen Fusarium graminearum.

    Directory of Open Access Journals (Sweden)

    Charles G Nasmith

    2011-09-01

    Full Text Available In F. graminearum, the transcriptional regulator Tri6 is encoded within the trichothecene gene cluster and regulates genes involved in the biosynthesis of the secondary metabolite deoxynivalenol (DON. The Tri6 protein with its Cys₂His₂ zinc-finger may also conform to the class of global transcription regulators. This class of global transcriptional regulators mediate various environmental cues and generally responds to the demands of cellular metabolism. To address this issue directly, we sought to find gene targets of Tri6 in F. graminearum grown in optimal nutrient conditions. Chromatin immunoprecipitation followed by Illumina sequencing (ChIP-Seq revealed that in addition to identifying six genes within the trichothecene gene cluster, Tri1, Tri3, Tri6, Tri7, Tri12 and Tri14, the ChIP-Seq also identified 192 additional targets potentially regulated by Tri6. Functional classification revealed that, among the annotated genes, ∼40% are associated with cellular metabolism and transport and the rest of the target genes fall into the category of signal transduction and gene expression regulation. ChIP-Seq data also revealed Tri6 has the highest affinity toward its own promoter, suggesting that this gene could be subject to self-regulation. Electro mobility shift assays (EMSA performed on the promoter of Tri6 with purified Tri6 protein identified a minimum binding motif of GTGA repeats as a consensus sequence. Finally, expression profiling of F. graminearum grown under nitrogen-limiting conditions revealed that 49 out of 198 target genes are differentially regulated by Tri6. The identification of potential new targets together with deciphering novel binding sites for Tri6, casts new light into the role of this transcriptional regulator in the overall growth and development of F. graminearum.

  2. Autism and increased paternal age related changes in global levels of gene expression regulation.

    Directory of Open Access Journals (Sweden)

    Mark D Alter

    Full Text Available A causal role of mutations in multiple general transcription factors in neurodevelopmental disorders including autism suggested that alterations in global levels of gene expression regulation might also relate to disease risk in sporadic cases of autism. This premise can be tested by evaluating for changes in the overall distribution of gene expression levels. For instance, in mice, variability in hippocampal-dependent behaviors was associated with variability in the pattern of the overall distribution of gene expression levels, as assessed by variance in the distribution of gene expression levels in the hippocampus. We hypothesized that a similar change in variance might be found in children with autism. Gene expression microarrays covering greater than 47,000 unique RNA transcripts were done on RNA from peripheral blood lymphocytes (PBL of children with autism (n = 82 and controls (n = 64. Variance in the distribution of gene expression levels from each microarray was compared between groups of children. Also tested was whether a risk factor for autism, increased paternal age, was associated with variance. A decrease in the variance in the distribution of gene expression levels in PBL was associated with the diagnosis of autism and a risk factor for autism, increased paternal age. Traditional approaches to microarray analysis of gene expression suggested a possible mechanism for decreased variance in gene expression. Gene expression pathways involved in transcriptional regulation were down-regulated in the blood of children with autism and children of older fathers. Thus, results from global and gene specific approaches to studying microarray data were complimentary and supported the hypothesis that alterations at the global level of gene expression regulation are related to autism and increased paternal age. Global regulation of transcription, thus, represents a possible point of convergence for multiple etiologies of autism and other

  3. Global small RNA chaperone Hfq and regulatory small RNAs are important virulence regulators in Erwinia amylovora.

    Science.gov (United States)

    Zeng, Quan; McNally, R Ryan; Sundin, George W

    2013-04-01

    Hfq is a global small RNA (sRNA) chaperone that interacts with Hfq-regulated sRNAs and functions in the posttranscriptional regulation of gene expression. In this work, we identified Hfq to be a virulence regulator in the Gram-negative fire blight pathogen Erwinia amylovora. Deletion of hfq in E. amylovora Ea1189 significantly reduced bacterial virulence in both immature pear fruits and apple shoots. Analysis of virulence determinants in strain Ea1189Δhfq showed that Hfq exerts pleiotropic regulation of amylovoran exopolysaccharide production, biofilm formation, motility, and the type III secretion system (T3SS). Further characterization of biofilm regulation by Hfq demonstrated that Hfq limits bacterial attachment to solid surfaces while promoting biofilm maturation. Characterization of T3SS regulation by Hfq revealed that Hfq positively regulates the translocation and secretion of the major type III effector DspE and negatively controls the secretion of the putative translocator HrpK and the type III effector Eop1. Lastly, 10 Hfq-regulated sRNAs were identified using a computational method, and two of these sRNAs, RprA and RyhA, were found to be required for the full virulence of E. amylovora.

  4. Quantitative analysis of proteome and lipidome dynamics reveals functional regulation of global lipid metabolism.

    Science.gov (United States)

    Casanovas, Albert; Sprenger, Richard R; Tarasov, Kirill; Ruckerbauer, David E; Hannibal-Bach, Hans Kristian; Zanghellini, Jürgen; Jensen, Ole N; Ejsing, Christer S

    2015-03-19

    Elucidating how and to what extent lipid metabolism is remodeled under changing conditions is essential for understanding cellular physiology. Here, we analyzed proteome and lipidome dynamics to investigate how regulation of lipid metabolism at the global scale supports remodeling of cellular architecture and processes during physiological adaptations in yeast. Our results reveal that activation of cardiolipin synthesis and remodeling supports mitochondrial biogenesis in the transition from fermentative to respiratory metabolism, that down-regulation of de novo sterol synthesis machinery prompts differential turnover of lipid droplet-associated triacylglycerols and sterol esters during respiratory growth, that sphingolipid metabolism is regulated in a previously unrecognized growth stage-specific manner, and that endogenous synthesis of unsaturated fatty acids constitutes an in vivo upstream activator of peroxisomal biogenesis, via the heterodimeric Oaf1/Pip2 transcription factor. Our work demonstrates the pivotal role of lipid metabolism in adaptive processes and provides a resource to investigate its regulation at the cellular level.

  5. Post-Transcriptional Regulation by the Csr Global Regulatory System in Escherichia coli

    OpenAIRE

    Suzuki, Kazushi; 鈴木, 一史

    2007-01-01

    In many species of bacteria, the Csr (carbon storage regulator) global regulatory system coordinates the expression of various genes. In Escherichia coli, the central component of this system, CsrA, is a RNA-binding protein. The CsrA is a homodimer and binds to leader segments of target mRNAs, affecting their translation and stability. CsrA activity is regulated by two small non-coding RNAs, CsrB and CsrC. These RNAs contain multiple CsrA-binding sequences and act by sequestering CsrA. In thi...

  6. Spaceflight Alters Bacterial Gene Expression and Virulence and Reveals Role for Global Regulator Hfq

    Science.gov (United States)

    Wilson, J. W.; Ott, C. M.; zuBentrup, K. Honer; Ramamurthy R.; Quick, L.; Porwollik, S.; Cheng, P.; McClellan, M.; Tsaprailis, G.; Radabaugh, T.; Hunt, A.; Fernandez, D.; Richter, E.; Shah, M.; Kilcoyne, M.; Joshi, L.; Nelman-Gonzalez, M.; Hing, S.; Parra, M.; Dumaras, P.; Norwood, K.; Nickerson, C. A.; Bober, R.; Devich, J.; Ruggles, A.

    2007-01-01

    A comprehensive analysis of both the molecular genetic and phenotypic responses of any organism to the spaceflight environment has never been accomplished due to significant technological and logistical hurdles. Moreover, the effects of spaceflight on microbial pathogenicity and associated infectious disease risks have not been studied. The bacterial pathogen Salmonella typhimurium was grown aboard Space Shuttle mission STS-115 and compared to identical ground control cultures. Global microarray and proteomic analyses revealed 167 transcripts and 73 proteins changed expression with the conserved RNA-binding protein Hfq identified as a likely global regulator involved in the response to this environment. Hfq involvement was confirmed with a ground based microgravity culture model. Spaceflight samples exhibited enhanced virulence in a murine infection model and extracellular matrix accumulation consistent with a biofilm. Strategies to target Hfq and related regulators could potentially decrease infectious disease risks during spaceflight missions and provide novel therapeutic options on Earth.

  7. Global robust output regulation control for cascaded nonlinear systems using the internal model principle

    Science.gov (United States)

    Yu, Jiang-Bo; Zhao, Yan; Wu, Yu-Qiang

    2014-04-01

    This article considers the global robust output regulation problem via output feedback for a class of cascaded nonlinear systems with input-to-state stable inverse dynamics. The system uncertainties depend not only on the measured output but also all the unmeasurable states. By introducing an internal model, the output regulation problem is converted into a stabilisation problem for an appropriately augmented system. The designed dynamic controller could achieve the global asymptotic tracking control for a class of time-varying reference signals for the system output while keeping all other closed-loop signals bounded. It is of interest to note that the developed control approach can be applied to the speed tracking control of the fan speed control system. The simulation results demonstrate its effectiveness.

  8. Work and Employment Relations in a Globalized World: The Emerging Texture of Transnational Labour Regulation

    OpenAIRE

    Pries, L.; Seeliger, M.

    2013-01-01

    While globalization has led to what can – with reference to Karl Polanyi – be referred to as a disembedding of the labour market from its nationally segmented settings, recent decades bring about a development identifiable as a ‘countermovement’. As the text shows, drawing on the example of European Works Councils and International Framework Agreements, this process of ‘re-embedding’ takes place through a network of different measures of labour regulation. It is for this reason that establish...

  9. Bioconcentration factors (BCF) of silver in wild Agaricus campestris

    Energy Technology Data Exchange (ETDEWEB)

    Falandysz, J.; Danisiewicz, D. [Univ. of Gdansk (Poland)

    1995-07-01

    Silver is an element naturally occurring in small concentrations in different environmental sites. However, many anthropogenic sources of silver led to contamination of this element in soil surfaces, pastures, and coastal marine areas in different parts of the world. Estimates are that 40% of the 1.15x10{sup 4}t of silver produced annually worldwide, will escape into the environment. Due to municipal waste discharge and/or industrial effluents with high silver concentrations, 100 x above the background level have been reported in invertebrate species from polluted marine areas. The meta-stabile radioisotope, {sup 110m}Ag, is a main component of the liquid effluents from nuclear facilities under normal operating conditions. The presence of {sup 111}Ag and {sup 110m}Ag also has been widely found throughout Europe in the 1986 Chernobyl fallout. Silver ions are environmentally harmful. High toxic effects have been observed at low concentrations, especially in aquatic species. Species of lower fungi as well as the mushroom Agaricus bisporus are know to bioaccumulate high concentrations of silver when grown on an artificially enriched substrate. This study looks at the relationship between the silver content of soil and bioconcentration potential of wild Agaricus campestris from sites under different use and with different concentrations of heavy metals. 28 refs., 2 figs., 2 tabs.

  10. Hydrogen Monitoring Requirements in the Global Technical Regulation on Hydrogen and Fuel Cell Vehicles: Preprint

    Energy Technology Data Exchange (ETDEWEB)

    Buttner, William; Rivkin, Carl; Burgess, Robert; Hartmann, Kevin; Bubar, Max; Post, Matthew; Boon-Brett, Lois; Weidner, Eveline; Moretto, Pietro

    2016-07-01

    The United Nations Global Technical Regulation (GTR) Number 13 (Global Technical Regulation on Hydrogen and Fuel Cell Vehicles) is the defining document regulating safety requirements in hydrogen vehicles, and in particular fuel cell electric vehicles (FCEV). GTR Number 13 has been formally implemented and will serve as the basis for the national regulatory standards for FCEV safety in North America (Canada, United States), Japan, Korea, and the European Union. The GTR defines safety requirement for these vehicles, including specifications on the allowable hydrogen levels in vehicle enclosures during in-use and post-crash conditions and on the allowable hydrogen emissions levels in vehicle exhaust during certain modes of normal operation. However, in order to be incorporated into national regulations, that is, in order to be binding, methods to verify compliance to the specific requirements must exist. In a collaborative program, the Sensor Laboratories at the National Renewable Energy Laboratory in the United States and the Joint Research Centre, Institute for Energy and Transport in the Netherlands have been evaluating and developing analytical methods that can be used to verify compliance to the hydrogen release requirement as specified in the GTR.

  11. Global regulator SATB1 recruits beta-catenin and regulates T(H2 differentiation in Wnt-dependent manner.

    Directory of Open Access Journals (Sweden)

    Dimple Notani

    2010-01-01

    Full Text Available In vertebrates, the conserved Wnt signalling cascade promotes the stabilization and nuclear accumulation of beta-catenin, which then associates with the lymphoid enhancer factor/T cell factor proteins (LEF/TCFs to activate target genes. Wnt/beta -catenin signalling is essential for T cell development and differentiation. Here we show that special AT-rich binding protein 1 (SATB1, the T lineage-enriched chromatin organizer and global regulator, interacts with beta-catenin and recruits it to SATB1's genomic binding sites. Gene expression profiling revealed that the genes repressed by SATB1 are upregulated upon Wnt signalling. Competition between SATB1 and TCF affects the transcription of TCF-regulated genes upon beta-catenin signalling. GATA-3 is a T helper type 2 (T(H2 specific transcription factor that regulates production of T(H2 cytokines and functions as T(H2 lineage determinant. SATB1 positively regulated GATA-3 and siRNA-mediated knockdown of SATB1 downregulated GATA-3 expression in differentiating human CD4(+ T cells, suggesting that SATB1 influences T(H2 lineage commitment by reprogramming gene expression. In the presence of Dickkopf 1 (Dkk1, an inhibitor of Wnt signalling, GATA-3 is downregulated and the expression of signature T(H2 cytokines such as IL-4, IL-10, and IL-13 is reduced, indicating that Wnt signalling is essential for T(H2 differentiation. Knockdown of beta-catenin also produced similar results, confirming the role of Wnt/beta-catenin signalling in T(H2 differentiation. Furthermore, chromatin immunoprecipitation analysis revealed that SATB1 recruits beta-catenin and p300 acetyltransferase on GATA-3 promoter in differentiating T(H2 cells in a Wnt-dependent manner. SATB1 coordinates T(H2 lineage commitment by reprogramming gene expression. The SATB1:beta-catenin complex activates a number of SATB1 regulated genes, and hence this study has potential to find novel Wnt responsive genes. These results demonstrate that SATB1

  12. Globalization

    Institute of Scientific and Technical Information of China (English)

    范玮丽

    2008-01-01

    This paper mainly talks about the currently hot topic-globalization. Firstly, it brings out the general trend about globalization and how to better understand its implication. Secondly, it largely focuses on how to deal with it properly, especially for international marketers. Then, facing with the overwhelming trend, it is time for us to think about seriously what has globalization brought to us. Last but not least, it summarized the author's personal view about the future of globalization and how should we go.

  13. Globalization

    Directory of Open Access Journals (Sweden)

    Tulio Rosembuj

    2006-12-01

    Full Text Available There is no singular globalization, nor is the result of an individual agent. We could start by saying that global action has different angles and subjects who perform it are different, as well as its objectives. The global is an invisible invasion of materials and immediate effects.

  14. Transcriptomics analyses reveal global roles of the regulator AveI in Streptomyces avermitilis.

    Science.gov (United States)

    Chen, Lei; Chen, Jun; Jiang, Yuqian; Zhang, Weiwen; Jiang, Weihong; Lu, Yinhua

    2009-09-01

    In our previous studies, AveI was identified as a negative regulator for avermectin biosynthesis in Streptomyces avermitilis NRRL8165, and the aveI-null mutant of NRRL8165 could produce at least 10-fold more avermectin B1a than its wild-type strain. In order to explore the regulatory mechanism by which aveI affects avermectin biosynthesis, in this study, we performed a global comparative gene expression analysis between aveI deletion mutant 8165DeltaI and its wild-type strain using NimbleGen microarrays in combination with real-time reverse transcriptase-PCR. The results showed the aveI deletion has caused global changes beyond the avermectin biosynthetic gene cluster. The aveI gene not only negatively affected expression of the avermectin biosynthetic gene cluster but also affected expression of oligomycin and filipin biosynthetic clusters. In addition, the genes involved in precursor biosyntheses for avermectin or other antibiotics, such as crotonyl-CoA reductase and methylmalonyl-CoA decarboxylase, were also upregulated in aveI mutant. Furthermore, genes in several key primary metabolic pathways, such as protein synthesis and fatty acid metabolism, were found downregulated in the mutant. These results suggested that the aveI gene may be functioning as a global regulator involved in directing carbon flux from primary to secondary metabolism.

  15. CovR-controlled global regulation of gene expression in Streptococcus mutans.

    Directory of Open Access Journals (Sweden)

    Alexander Dmitriev

    Full Text Available CovR/S is a two-component signal transduction system (TCS that controls the expression of various virulence related genes in many streptococci. However, in the dental pathogen Streptococcus mutans, the response regulator CovR appears to be an orphan since the cognate sensor kinase CovS is absent. In this study, we explored the global transcriptional regulation by CovR in S. mutans. Comparison of the transcriptome profiles of the wild-type strain UA159 with its isogenic covR deleted strain IBS10 indicated that at least 128 genes (∼6.5% of the genome were differentially regulated. Among these genes, 69 were down regulated, while 59 were up regulated in the IBS10 strain. The S. mutans CovR regulon included competence genes, virulence related genes, and genes encoded within two genomic islands (GI. Genes encoded by the GI TnSmu2 were found to be dramatically reduced in IBS10, while genes encoded by the GI TnSmu1 were up regulated in the mutant. The microarray data were further confirmed by real-time RT-PCR analyses. Furthermore, direct regulation of some of the differentially expressed genes was demonstrated by electrophoretic mobility shift assays using purified CovR protein. A proteomic study was also carried out that showed a general perturbation of protein expression in the mutant strain. Our results indicate that CovR truly plays a significant role in the regulation of several virulence related traits in this pathogenic streptococcus.

  16. Self-Organizing Global Gene Expression Regulated through Criticality: Mechanism of the Cell-Fate Change

    Science.gov (United States)

    Tsuchiya, Masa; Giuliani, Alessandro; Hashimoto, Midori; Erenpreisa, Jekaterina; Yoshikawa, Kenichi

    2016-01-01

    Background A fundamental issue in bioscience is to understand the mechanism that underlies the dynamic control of genome-wide expression through the complex temporal-spatial self-organization of the genome to regulate the change in cell fate. We address this issue by elucidating a physically motivated mechanism of self-organization. Principal Findings Building upon transcriptome experimental data for seven distinct cell fates, including early embryonic development, we demonstrate that self-organized criticality (SOC) plays an essential role in the dynamic control of global gene expression regulation at both the population and single-cell levels. The novel findings are as follows: i) Mechanism of cell-fate changes: A sandpile-type critical transition self-organizes overall expression into a few transcription response domains (critical states). A cell-fate change occurs by means of a dissipative pulse-like global perturbation in self-organization through the erasure of initial-state critical behaviors (criticality). Most notably, the reprogramming of early embryo cells destroys the zygote SOC control to initiate self-organization in the new embryonal genome, which passes through a stochastic overall expression pattern. ii) Mechanism of perturbation of SOC controls: Global perturbations in self-organization involve the temporal regulation of critical states. Quantitative evaluation of this perturbation in terminal cell fates reveals that dynamic interactions between critical states determine the critical-state coherent regulation. The occurrence of a temporal change in criticality perturbs this between-states interaction, which directly affects the entire genomic system. Surprisingly, a sub-critical state, corresponding to an ensemble of genes that shows only marginal changes in expression and consequently are considered to be devoid of any interest, plays an essential role in generating a global perturbation in self-organization directed toward the cell-fate change

  17. Minimal Phenotypic Test for Simple Differentiation of Xanthomonas Campestris from other Yellow-Pigmented Bacteria Isolated from Soil

    Directory of Open Access Journals (Sweden)

    MR Soudi

    2011-06-01

    Full Text Available Background and Objectives: Isolation of Xanthomonas campestris from soil has a wide range of applications from monitoring of phytopathogenic populations in soil to screening of improved xanthan-producing strains. Identification of Xanthomonas campestris and its pathovars requires pathogenicity tests in addition to phenotypic and molecular characterization.Materials and Methods: Thirty phenotypic tests were carried out on 57 yellow-pigmented bacterial isolates obtained from soil of cabbage farms after screening on Selective Xanthomonas (SX agar and transferring on Yeast Malt agar. Absorption spectra of pigments and capability of biopolymer production were determined for the isolates. Some characteristics of the biopolymer produced and presence of a X. campestris-specific gene marker were investigated for nine putative X. campestris isolates.Results: The present study introduces a set of simple phenotypic tests including urease, acid production from sucrose, mucoid growth on 5% sucrose, starch hydrolysis, growth in 4% NaCl, motility and utilization of asparagine as sole carbon and nitrogen source for quick and inexpensive tentative identification of Xanthomonas campestris. Validation of these tests was confirmed in 100% of the cases by characterization of bacterial exopolysaccharide as xanthan and production of genus-specific xanthomonadin pigment. Moreover, tracking of hrc gene among putative X. campestris isolates gave positive results in 80% of cases.Conclusion: The Minimal simple phenotypic tests facilitate the screening and differentiation of putative X. campestris isolates from other false bacterial strains isolated from soil on semiselective SX agar.

  18. Pathogenicity of EPS-deficient mutants (gumB-, gumD and gumE - ) of Xanthomonas campestris pv. campestris

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    Three extracellular polysaccharide (EPS) -deficient mutants of the pathogen Xanthomonas campestris pv. campestris, gumB - , gumD - and gumE- were constructed by Tn5 gusA5 mutagenesis in this study. The results of pathogenicity bioassay showed that three mutants had the obviously decreased pathogenicity on radish ( Raphanus sativus L. ) leaves. Because dead body of the bacteria still caused symptoms, it seemed that some unknown factors on the bac terial cell surface might play certain roles in the pathogenicity of the pathogen. The extracted raw EPS could lead to the chlorotic symptom on radish leaves, and its virulence was increased with the increase of EPS dosage, which suggested that EPS was a main component that caused the danage on radish leaves.

  19. EVALUATION OF ANTI-BACTERIAL ACTIVITY OF LOCAL FLORA OF BUNDELKHAND REGION OF JHANSI- INDIA AGAINST PLANT PATHOGENIC BACTERIA Xanthomonas campestris pv. campestris

    Directory of Open Access Journals (Sweden)

    Sazada Siddiqui

    2014-05-01

    Full Text Available Twenty plants namely Acacia nilotica (L. Willd.ex delil, Ageratum conyzoides Linn, Boerhaavia diffusa Linn., Cynodon dactylon (L. Pers, Cleome viscosa L, Datura stramonium Linn, Euphorbia hirta Linn, Ficus benghalensis Linn, Hyptis suaveolens (Linn poit, Hibiscus rosa-sinensis Linn, Jatropha gossypifolia Linn, Phyllanthus niruri webster, Prosopis juliflora, Polyalthia longifolia, Sida cordifolia, Tephrosia purpurea (Linn. Pers, Tridax procumbens Linn, Zizyphus jujube Linn, Solanum nigrum Linn, were collected from different localities and screened for their antibacterial activity against phytopathogenic bacterium, Xanthomonas campestris pv. campestris. Among all the tested species, nine plant species viz Acacia nilotica, Ageratum conyzoied, Boerhaavia diffusa, Cleome viscose, Datura stramonium, Euphorbia hirta, Hyptis suaveolens, Hibiscus rosa sinensis, Prosopis juliflora and Tridex procumbens showed medium to light antibacterial activity against the selected pathogens. Significant antibacterial activity was observed in aqueous extracts of Prosopsis juliflora, Hyptis suaveolens, Euphorbia hirta and Acacia nilotica

  20. HP1 Is Involved in Regulating the Global Impact of DNA Methylation on Alternative Splicing

    Directory of Open Access Journals (Sweden)

    Ahuvi Yearim

    2015-02-01

    Full Text Available The global impact of DNA methylation on alternative splicing is largely unknown. Using a genome-wide approach in wild-type and methylation-deficient embryonic stem cells, we found that DNA methylation can either enhance or silence exon recognition and affects the splicing of more than 20% of alternative exons. These exons are characterized by distinct genetic and epigenetic signatures. Alternative splicing regulation of a subset of these exons can be explained by heterochromatin protein 1 (HP1, which silences or enhances exon recognition in a position-dependent manner. We constructed an experimental system using site-specific targeting of a methylated/unmethylated gene and demonstrate a direct causal relationship between DNA methylation and alternative splicing. HP1 regulates this gene’s alternative splicing in a methylation-dependent manner by recruiting splicing factors to its methylated form. Our results demonstrate DNA methylation’s significant global influence on mRNA splicing and identify a specific mechanism of splicing regulation mediated by HP1.

  1. Women's global self-determination, eating regulation, and body dissatisfaction: exploring the role of autonomy support.

    Science.gov (United States)

    Kopp, Lyndall L; Zimmer-Gembeck, Melanie J

    2011-08-01

    Body dissatisfaction is an important correlate of dysfunctional eating. In the present study (N=208) the primary aim was to test whether women's internal and autonomous motivation can protect against endorsements of societal pressures regarding the ideal female body and against body dissatisfaction. Additionally, the role of others' autonomy support was investigated. Women who reported more Global Self-Determination (GSD) were lower in internalisation of the thin ideal and this association was fully mediated by perceived sociocultural pressure to be thin. Moreover, the positive association between perceived pressure and body dissatisfaction was partially mediated by thin ideal internalisation. Body dissatisfaction was associated with a more controlled regulation of eating, and GSD moderated the association between body dissatisfaction and autonomous regulation of eating. Autonomy support played a role in eating regulation as women with more support reported more autonomous eating. Yet, the support did not moderate the relationship between body dissatisfaction and eating regulation. Future studies should continue to explore the potential facilitative role of autonomy support in promoting a self-determined approach to eating regulation.

  2. New tuning conditions for a class of nonlinear PID global regulators of robot manipulators

    Science.gov (United States)

    Orrante-Sakanassi, Jorge; Santibánez, Victor; Hernández-Guzmán, Victor M.

    2014-04-01

    Several nonlinear proportional-integral-derivative (PID) controllers for robot manipulators that ensure global asymptotic stability have been proposed in the literature. However, the tuning criteria obtained are expressed in terms of conditions so restrictive that they have avoided, until now, carrying out experimental tests with such controllers. Tuning criteria of some PID controllers for robot manipulators with conditions more relaxed than those presented previously in the literature have been proposed in two recent works by the authors. This was achieved by setting the tuning conditions individually for each joint instead of general conditions for the whole robot. In this paper we extend these results to a class of nonlinear PID global regulators for robot manipulators. The obtained tuning criteria are given in terms of conditions so relaxed that they have allowed to carry out, for the first time, experimental essays with these controllers. Such experiments are presented in this paper using a two-degrees-of-freedom robot manipulator.

  3. Differential modulation of global and local neural oscillations in REM sleep by homeostatic sleep regulation

    Science.gov (United States)

    Kim, Bowon; Kocsis, Bernat; Hwang, Eunjin; Kim, Youngsoo; Strecker, Robert E.; McCarley, Robert W.; Choi, Jee Hyun

    2017-01-01

    Homeostatic rebound in rapid eye movement (REM) sleep normally occurs after acute sleep deprivation, but REM sleep rebound settles on a persistently elevated level despite continued accumulation of REM sleep debt during chronic sleep restriction (CSR). Using high-density EEG in mice, we studied how this pattern of global regulation is implemented in cortical regions with different functions and network architectures. We found that across all areas, slow oscillations repeated the behavioral pattern of persistent enhancement during CSR, whereas high-frequency oscillations showed progressive increases. This pattern followed a common rule despite marked topographic differences. The findings suggest that REM sleep slow oscillations may translate top-down homeostatic control to widely separated brain regions whereas fast oscillations synchronizing local neuronal ensembles escape this global command. These patterns of EEG oscillation changes are interpreted to reconcile two prevailing theories of the function of sleep, synaptic homeostasis and sleep dependent memory consolidation. PMID:28193862

  4. GLOBAL FINANCIAL CRISIS 2008 CAUSES AND CONSEQUENCES FOR RUSSIAN MACROPRUDENTIAL REGULATION

    Directory of Open Access Journals (Sweden)

    Егор Николаевич Поляков

    2013-09-01

    Full Text Available This article analyzes the impact of volatility in global financial markets on the economy of developing countries and the analysis of factors contributing to a greater or lesser degree of vulnerability of the financial systems of developing countries in the global crisis of 2008-2010. Particular attention is paid to the influence of the global financial crisis on the economies of the two groups of developing countries of Southeast Asia and Central and Eastern Europe. On the basis of the analysis due to the dynamics of the main macroeconomic indicators of the Russian Federation during the acute phase of the crisis. The author presents an analysis of the vulnerability of the Russian economy in the event of possible instability in global financial markets at present. The author came to the conclusion that the main reason for which in 2009 the level of GDP growth Russia won 178 seats out of 184 countries, were 2 groups of errors. The first group of errors - errors are system of macro-prudential regulation made by the Central Bank from 2002 to 2007, such as: lack of control and regulation of borrowings of the private and banking sectors to foreign markets, as well as in the domestic market in foreign currency, the loss of control over domestic financial markets, such as: the interbank lending market, the stock market. The second group of errors - errors it committed securities during the crisis. The first error of the Central Bank - a rejection Vat refinance foreign debt of non-financial sector, resulting in an acute liquidity crisis. The second error is stretched for a few months, not a one-time devaluation of the ruble. Price of the second error was 200 billion USD, which the Central Bank lost and speculators earned.DOI: http://dx.doi.org/10.12731/2218-7405-2013-9-4

  5. Patterns of globalized reproduction: Egg cells regulation in Israel and Austria

    Directory of Open Access Journals (Sweden)

    Shalev Carmel

    2012-04-01

    Full Text Available Abstract Since the successful introduction of in vitro fertilization in 1978, medically assisted reproduction (MAR has proliferated in multiple clinical innovations. Consequently, egg cells have become an object of demand for both infertility treatment and stem cell research, and this raises complex legal, ethical, social and economic issues. In this paper we compare how the procurement and use of human egg cells is regulated in two countries: Israel and Austria. Israel is known for its scientific leadership, generous public funding, high utilization and liberal regulation of assisted reproductive technology (ART. Austria lies at the other extreme of the regulatory spectrum in terms of restrictions on reproductive interventions. In both countries, however, there is a constant increase in the use of the technology, and recent legal developments make egg cells more accessible. Also, in both countries the scarcity of egg cells in concert with the rising demand for donations has led to the emergence of cross-border markets and global 'reproductive tourism' practices. In Israel, in particular, a scandal known as the 'eggs affair' was followed by regulation that allowed egg cell donations from outside the country under certain conditions. Cross-border markets are developed by medical entrepreneurs, driven by global economic gaps, made possible by trans-national regulatory lacunae and find expression as consumer demand. The transnational practice of egg cell donations indicates the emergence of a global public health issue, but there is a general lack of medical and epidemiological data on its efficacy and safety. We conclude that there is need for harmonisation of domestic laws and formulation of new instruments for international governance.

  6. AN ALTERNATIVE APPROACH TO GLOBAL ROBUST OUTPUT REGULATION OF OUTPUT FEEDBACK SYSTEMS

    Institute of Scientific and Technical Information of China (English)

    Jie HUANG

    2007-01-01

    The global robust output regulation problem of the output feedback systems has been extensively studied under various assumptions of the complexity and uncertainty. All these approaches boil down to a stabilization problem of a so-called augmented extended system. This paper will describe an alternative approach which converts the original problem into a stabilization problem of a so-called extended augmented system. As the extended augmented system is somewhat simpler than the augmented extended system, this alternative approach is also simpler than the first approach.

  7. Study on the spectral response of Brassica Campestris L. leaf to the copper pollution

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Brassica Campestis L. was cultivated in the soil at the laboratory. The red edge,the visual spectrum and the near-infrared spectrum of Brassica Campestis L. leaf were used to explore the spectral response of Brassica Campestis L. leaf to the copper stress. As the Cu content in the soil gets increased,the copper level in Brassica Campestris L. leaf would be increased,and the chlorophyll level in Brassica Campestris L. leaf would be decreased. As a result,the visual spectral reflectance (A1) of Brassica Campestris L. leaf is increased,and the blue-shift (moving towards the shorter waveband) degree (S) of the red edge (the ascending region of the re-flectivity at 680―740 nm) gets increased. However,the near-infrared spectral re-flectance (A2) decreases. With the correlation coefficient R2 more than 0.95,these parameters of A1,A2 and S can be perfectly used to simulate and predict the copper level in Brassica Campestris L. leaf.

  8. Study on the spectral response of Brassica Campestris L. leaf to the copper pollution

    Institute of Scientific and Technical Information of China (English)

    LIU SuHong; LIU XinHui; HOU Juan; CHI GuangYu; CUI BaoShan

    2008-01-01

    Brassica Campestis L. was cultivated in the soil at the laboratory. The red edge, the visual spectrum and the near-infrared spectrum of Brassica Campestis L. leaf were used to explore the spectral response of Brassica Campestis L. leaf to the copper stress. As the Cu content in the soil gets increased, the copper level in Brassica Campestris L. leaf would be increased, and the chlorophyll level in Brassica Campestris L. leaf would be decreased. As a result, the visual spectral reflectance (A1) of Brassica Campestris L. leaf is increased, and the blue-shift (moving towards the shorter waveband) degree (S) of the red edge (the ascending region of the reflectivity at 680-740 nm) gets increased. However, the near-infrared spectral reflectance (A2) decreases. With the correlation coefficient R2 more than 0.95, these parameters of A1,A2 and S can be perfectly used to simulate and predict the copper level in Brassica Campestris L. leaf.

  9. Inheritance of oilseed rape (Brassica napus) RAPD markers in a backcross progeny with Brassica campestris

    DEFF Research Database (Denmark)

    Mikkelsen, T.R.; Jensen, J.; Bagger Jørgensen, Rikke

    1996-01-01

    Different cultivars/transgenic lines of oilseed rape (Brassica napus) were crossed (as females) with different cultivars/populations of Brassica campestris. All cross combinations produced seed, with an average seed set per pollination of 9.8. Backcrossing of selected interspecific hybrids (as...

  10. Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs.

    Science.gov (United States)

    Smits, Arne H; Lindeboom, Rik G H; Perino, Matteo; van Heeringen, Simon J; Veenstra, Gert Jan C; Vermeulen, Michiel

    2014-09-01

    While recent developments in genomic sequencing technology have enabled comprehensive transcriptome analyses of single cells, single cell proteomics has thus far been restricted to targeted studies. Here, we perform global absolute protein quantification of fertilized Xenopus laevis eggs using mass spectrometry-based proteomics, quantifying over 5800 proteins in the largest single cell proteome characterized to date. Absolute protein amounts in single eggs are highly consistent, thus indicating a tight regulation of global protein abundance. Protein copy numbers in single eggs range from tens of thousands to ten trillion copies per cell. Comparison between the single-cell proteome and transcriptome reveal poor expression correlation. Finally, we identify 439 proteins that significantly change in abundance during early embryogenesis. Downregulated proteins include ribosomal proteins and upregulated proteins include basal transcription factors, among others. Many of these proteins do not show regulation at the transcript level. Altogether, our data reveal that the transcriptome is a poor indicator of the proteome and that protein levels are tightly controlled in X. laevis eggs.

  11. Comparative and functional genomics reveals genetic diversity and determinants of host specificity among reference strains and a large collection of Chinese isolates of the phytopathogen Xanthomonas campestris pv. campestris

    OpenAIRE

    He, Yong-Qiang; Zhang, Liang; Jiang, Bo-Le; Zhang, Zheng-Chun; Xu, Rong-Qi; Tang, Dong-Jie; Qin, Jing; Jiang, Wei; Zhang, Xia; LIAO, JIE; Cao, Jin-Ru; Zhang, Sui-Sheng; Wei, Mei-Liang; Liang, Xiao-Xia; Lu, Guang-Tao

    2007-01-01

    Background Xanthomonas campestris pathovar campestris (Xcc) is the causal agent of black rot disease of crucifers worldwide. The molecular genetic diversity and host specificity of Xcc are poorly understood. Results We constructed a microarray based on the complete genome sequence of Xcc strain 8004 and investigated the genetic diversity and host specificity of Xcc by array-based comparative genome hybridization analyses of 18 virulent strains. The results demonstrate that a genetic core comp...

  12. The global regulator LaeA controls production of citric acid and endoglucanases in Aspergillus carbonarius

    DEFF Research Database (Denmark)

    Linde, Tore; Zoglowek, Marta; Lübeck, Mette;

    2016-01-01

    The global regulatory protein LaeA is known for regulating the production of many kinds of secondary metabolites in Aspergillus species, as well as sexual and asexual reproduction, and morphology. In Aspergillus carbonarius, it has been shown that LaeA regulates production of ochratoxin. We have ...... production or on cellulose or xylanase activity....

  13. Unusual structure of the tonB-exb DNA region of Xanthomonas campestris pv. campestris: tonB, exbB, and exbD1 are essential for ferric iron uptake, but exbD2 is not.

    Science.gov (United States)

    Wiggerich, H G; Klauke, B; Köplin, R; Priefer, U B; Pühler, A

    1997-01-01

    The nucleotide sequence of a 3.6-kb HindIII-SmaI DNA fragment of Xanthomonas campestris pv. campestris revealed four open reading frames which, based on sequence homologies, were designated tonB, exbB, exbD1, and exbD2. Analysis of translational fusions to alkaline phosphatase and beta-galactosidase confirmed that the TonB, ExbB, ExbD1, and ExbD2 proteins are anchored in the cytoplasmic membrane. The TonB protein of X. campestris pv. campestris lacks the conserved (Glu-Pro)n and (Lys-Pro)m repeats but harbors a 13-fold repeat of proline residues. By mutational analysis, the tonB, exbB, and exbD1 genes were shown to be essential for ferric iron import in X. campestris pv. campestris. In contrast, the exbD2 gene is not involved in the uptake of ferric iron. PMID:9371459

  14. TetR-type transcriptional regulator VtpR functions as a global regulator in Vibrio tubiashii.

    Science.gov (United States)

    Hasegawa, Hiroaki; Häse, Claudia C

    2009-12-01

    Vibrio tubiashii, a causative agent of severe shellfish larval disease, produces multiple extracellular proteins, including a metalloprotease (VtpA), as potential virulence factors. We previously reported that VtpA is toxic for Pacific oyster (Crassostrea gigas) larvae. In this study, we show that extracellular protease production by V. tubiashii was much reduced by elevated salt concentrations, as well as by elevated temperatures. In addition, V. tubiashii produced dramatically less protease in minimal salts medium supplemented with glucose or sucrose as the sole carbon source than with succinate. We identified a protein that belongs to the TetR family of transcriptional regulators, VtpR, which showed high homology with V. cholerae HapR. We conclude that VtpR activates VtpA production based on the following: (i) a VtpR-deficient V. tubiashii mutant did not produce extracellular proteases, (ii) the mutant showed reduced expression of a vtpA-lacZ fusion, and (iii) VtpR activated vtpA-lacZ in a V. cholerae heterologous background. Moreover, we show that VtpR activated the expression of an additional metalloprotease gene (vtpB). The deduced VtpB sequence showed high homology with a metalloprotease, VhpA, from V. harveyi. Furthermore, the vtpR mutant strain produced reduced levels of extracellular hemolysin, which is attributed to the lower expression of the V. tubiashii hemolysin genes (vthAB). The VtpR-deficient mutant also had negative effects on bacterial motility and did not demonstrate toxicity to oyster larvae. Together, these findings establish that the V. tubiashii VtpR protein functions as a global regulator controlling an array of potential virulence factors.

  15. Checkpoint Kinases Regulate a Global Network of Transcription Factors in Response to DNA Damage

    Directory of Open Access Journals (Sweden)

    Eric J. Jaehnig

    2013-07-01

    Full Text Available DNA damage activates checkpoint kinases that induce several downstream events, including widespread changes in transcription. However, the specific connections between the checkpoint kinases and downstream transcription factors (TFs are not well understood. Here, we integrate kinase mutant expression profiles, transcriptional regulatory interactions, and phosphoproteomics to map kinases and downstream TFs to transcriptional regulatory networks. Specifically, we investigate the role of the Saccharomyces cerevisiae checkpoint kinases (Mec1, Tel1, Chk1, Rad53, and Dun1 in the transcriptional response to DNA damage caused by methyl methanesulfonate. The result is a global kinase-TF regulatory network in which Mec1 and Tel1 signal through Rad53 to synergistically regulate the expression of more than 600 genes. This network involves at least nine TFs, many of which have Rad53-dependent phosphorylation sites, as regulators of checkpoint-kinase-dependent genes. We also identify a major DNA damage-induced transcriptional network that regulates stress response genes independently of the checkpoint kinases.

  16. Globalization

    DEFF Research Database (Denmark)

    Plum, Maja

    Globalization is often referred to as external to education - a state of affair facing the modern curriculum with numerous challenges. In this paper it is examined as internal to curriculum; analysed as a problematization in a Foucaultian sense. That is, as a complex of attentions, worries, ways...... of reasoning, producing curricular variables. The analysis is made through an example of early childhood curriculum in Danish Pre-school, and the way the curricular variable of the pre-school child comes into being through globalization as a problematization, carried forth by the comparative practices of PISA...

  17. Governments, banks and global capital : the emergence of the global capital market and the politics of its regulation

    OpenAIRE

    Filipvic, M.

    1994-01-01

    This thesis analyses the global capital market, as one of the most dynamic aspects of the world economy. Once the dollars have begun to circulate outside the US, the expansion of transnational banking could not be curtailed. In addition to Eurocurrencies, other external financial markets were created, providing a global structure for the whole range of instruments to be traded. Economic and political changes in the late 1970s and in the beginning of the 1980s contributed to a shift in financi...

  18. Evolutionary Transition from Pathogenicity to Commensalism: Global Regulator Mutations Mediate Fitness Gains through Virulence Attenuation.

    Science.gov (United States)

    Jansen, Gunther; Crummenerl, Lena L; Gilbert, Felix; Mohr, Timm; Pfefferkorn, Roxana; Thänert, Robert; Rosenstiel, Philip; Schulenburg, Hinrich

    2015-11-01

    Symbiotic interactions are indispensable for metazoan function, but their origin and evolution remain elusive. We use a controlled evolution experiment to demonstrate the emergence of novel commensal interactions between Pseudomonas aeruginosa, an initially pathogenic bacterium, and a metazoan host, Caenorhabditis elegans. We show that commensalism evolves through loss of virulence, because it provides bacteria with a double fitness advantage: Increased within-host fitness and a larger host population to infect. Commensalism arises irrespective of host immune status, as the adaptive path in immunocompromised C. elegans knockouts does not differ from that in wild type. Dissection of temporal dynamics of genomic adaptation for 125 bacterial populations reveals highly parallel evolution of incipient commensalism across independent biological replicates. Adaptation is mainly achieved through frame shift mutations in the global regulator lasR and nonsynonymous point mutations in the polymerase gene rpoB that arise early in evolution. Genetic knockouts of lasR not only corroborate its role in virulence attenuation but also show that further mutations are necessary for the fully commensal phenotype. The evolutionary transition from pathogenicity to commensalism as we observe here is facilitated by mutations in global regulators such as lasR, because few genetic changes cause pleiotropic effects across the genome with large phenotypic effects. Finally, we found that nucleotide diversity increased more quickly in bacteria adapting to immunocompromised hosts than in those adapting to immunocompetent hosts. Nevertheless, the outcome of evolution was comparable across host types. Commensalism can thus evolve independently of host immune state solely as a side-effect of bacterial adaptation to novel hosts.

  19. Flavonóides O-glicosilados de Croton campestris St. Hill. (Euphorbiaceae Glycosyl flavonoids from Croton campestris St. Hill. (Euphorbiaceae

    Directory of Open Access Journals (Sweden)

    Paula M.L. dos Santos

    2005-12-01

    Full Text Available Do extrato butanólico de Croton campestris St. Hill. (Euphorbiaceae foram isolados quatro flavonóides, todos O-glicosídeos da quercetina. Estas substâncias foram identificadas como 3-O-b-D-apiofuranosil-(1®2-galactopiranosil quercetina (1, 3-O-b-D-galactopiranosil quercetina (hiperina (2, 3-O-a-L-arabinopiranosil quercetina (guaijaverina (3 e 3-O-a-L-ramnopiranosil quercetina (quercitrina (4.O presente trabalho relata a presença destas substâncias pela primeira vez para esta espécie de Croton, cuja elucidação estrutural deu-se por espectroscopia em UV, EM e RMN, incluindo as técnicas bidimensionais: ¹H-¹H (2D NOESY, 2D COSY, ¹H-13C (2D HETCOR e 13C (APT, além de comparações com os dados da literatura.Four flavonoids were isolated from the butanolic extract of the aerial parts of Croton campestris St. Hill. (Euphorbiaceae. These compounds were identified as 3-O-b-D-apiofuranosyl-(1®2-galactopyranoside quercetin (1, 3-O-b-D-galactopyranoside quercetin (hyperin (2, 3-O-a-L-arabinopyranoside quercetin (guaijaverin (3 and 3-O-a-L-ramnopyranoside quercetin (quercitrin (4. They have been isolated for the first time from Croton campestris. Their structures were elucidated by UV, MS and NMR experiments including ¹H-¹H (2D NOESY, 2D COSY, ¹H-13C (2D HETCOR, 13C (APT and by comparison of the spectral data with those reported in the literature.

  20. Flow regulation and river fragmentation in large basins due to global dam development (Invited)

    Science.gov (United States)

    Grill, G. O.; Lehner, B.

    2013-12-01

    stem is still relatively unobstructed as is the case for the Mekong and the Salween River basin. We will present results from future dam building scenarios, which show strong deterioration of both flow regulation and fragmentation indices for the Mekong and the Salween River and further deterioration for the Red River if all currently planned dams will be in operation. At the global scale we will show past and current trends of fragmentation and flow regulation indices and compare our results to previous impact assessments. Our model is aimed at decision makers and researchers seeking to conduct comprehensive dam impact assessments, including ecological information, to derive more integrated and sustainable energy strategies.

  1. Global control of reaction wheel pendulum through energy regulation and extended linearization of the state variables

    Directory of Open Access Journals (Sweden)

    Oscar D. Montoya-Giraldo

    2014-01-01

    Full Text Available This paper presents the design and simulation of a global controller for the Reaction Wheel Pendulum system using energy regulation and extended linearization methods for the state feedback. The proposed energy regulation is based on the gradual reduction of the energy of the system to reach the unstable equilibrium point. The signal input for this task is obtained from the Lyapunov stability theory. The extended state feedback controller design is used to get a smooth nonlinear function that extends the region of operation to a bigger range, in contrast with the static linear state feedback obtained through the method of approximate linearization around an operating point. The general designed controller operates with a switching between the two control signals depending upon the region of operation; perturbations are applied in the control signal and the (simulated measured variables to verify the robustness and efficiency of the controller. Finally, simulations and tests using the model of the reaction wheel pendulum system, allow to observe the versatility and functionality of the proposed controller in the entire operation region of the pendulum.

  2. Characterizing regulated reservoirs dynamics in regional to global scale hydrologic models

    Science.gov (United States)

    Beighley, E.; Yoon, Y.; Lee, H.; Pavelsky, T.; Allen, G. H.

    2015-12-01

    Lakes and reservoirs are widely used for water supply and flood control resulting in regulated release of outflows that are nonconcurrent with inflows. In hydrologic modeling applications, accounting for the regulated behavior of reservoirs distributed throughout a river system poses a significant challenge because detailed reservoir operation rules or strategies can be difficult or not possible to obtain. Building on this problem, this study addresses the science questions: Can we model reservoir water storage changes and outlet discharges based on satellite measurements of river water surface elevation and inundated area, and How does repeat cycle, mission duration and measurement uncertainty impact our ability to characterize reservoir behavior? A modeling framework suitable for regional to global applications and based on the forthcoming Surface Water and Ocean Topography (SWOT) satellite mission is presented. Although our framework can be combined with data assimilation techniques for real-time flood forecasting, our goal is to represent reservoir storage patterns in large-scale hydrologic models for simulating: (i) impacts of future climate and/or land cover conditions on water resources, and (ii) synthetic storm events (e.g., 100-yr flood) or event catalogs for flood hazard and risk assessments. In-situ and remotely sensed reservoir dynamics are presented for select locations in the Mississippi River Basin and used in the Hillslope River Routing (HRR) hydrologic model to simulate downstream flow dynamics.

  3. Expanding the Role of FurA as Essential Global Regulator in Cyanobacteria.

    Directory of Open Access Journals (Sweden)

    Andrés González

    Full Text Available In the nitrogen-fixing heterocyst-forming cyanobacterium Anabaena sp. PCC 7120, the ferric uptake regulator FurA plays a global regulatory role. Failures to eliminate wild-type copies of furA gene from the polyploid genome suggest essential functions. In the present study, we developed a selectively regulated furA expression system by the replacement of furA promoter in the Anabaena sp. chromosomes with the Co2+/Zn2+ inducible coaT promoter from Synechocystis sp. PCC 6803. By removing Co2+ and Zn2+ from the medium and shutting off furA expression, we showed that FurA was absolutely required for cyanobacterial growth. RNA-seq based comparative transcriptome analyses of the furA-turning off strain and its parental wild-type in conjunction with subsequent electrophoretic mobility shift assays and semi-quantitative RT-PCR were carried out in order to identify direct transcriptional targets and unravel new biological roles of FurA. The results of such approaches led us to identify 15 novel direct iron-dependent transcriptional targets belonging to different functional categories including detoxification and defences against oxidative stress, phycobilisome degradation, chlorophyll catabolism and programmed cell death, light sensing and response, heterocyst differentiation, exopolysaccharide biosynthesis, among others. Our analyses evidence novel interactions in the complex regulatory network orchestrated by FurA in cyanobacteria.

  4. Effect of virulence and serial transfers of Xanthomonas campestris on xanthan gum production

    Directory of Open Access Journals (Sweden)

    Nitschke Marcia

    2000-01-01

    Full Text Available The virulence of six Xanthomonas campestris isolates was evaluated using the percentage of lesion area of leaves in Brassica oleraceae host plant, compared to diameter of colonies, xanthan production and gum viscosity. In terms of virulence, the isolates belonged to two statistically different groups: isolates B, UPF and C7 showed values between 52 and 69%, while isolates CF, C and strain B-1459 gave 0-30% of lesion area. Final xanthan concentration, gum viscosity and colony diameter did not correlate with virulence calculated by percentage of lesion area, showing that this parameter is not a good criterium for selection of potential xanthan producer isolates. Serial transfers of X. campestris isolates in host plant did not show a significant effect on "in vitro" production of xanthan or on viscosity levels, suggesting that the increasing interaction between plant and bacteria did not stimulate the increase in xanthan production and viscosity.

  5. Global SUMO proteome responses guide gene regulation, mRNA biogenesis, and plant stress responses

    Directory of Open Access Journals (Sweden)

    Magdalena eMazur

    2012-09-01

    Full Text Available Small-ubiquitin-like MOdifier (SUMO is a key regulator of abiotic stress, disease resistance and development in plants. The identification of >350 plant SUMO targets has revealed many processes modulated by SUMO and potential consequences of SUMO on its targets. Importantly, highly related proteins are SUMO-modified in plants, yeast, and metazoans. Overlapping SUMO targets include heat-shock proteins, transcription regulators, histones, histone-modifying enzymes, proteins involved in DNA damage repair, but also proteins involved in mRNA biogenesis and nucleo-cytoplasmic transport. Proteomics studies indicate key roles for SUMO in gene repression by controlling histone (deacetylation activity at genomic loci. The responsible heavily sumoylated transcriptional repressor complexes are recruited by EAR (Ethylene-responsive element binding factor [ERF]-associated Amphiphilic Repression-motif containing transcription factors in plants. These transcription factors are not necessarily themselves a SUMO target. Conversely, SUMO acetylation prevents binding of downstream partners by preventing binding of SIMs (SUMO-interaction peptide motifs presents in these partners, while SUMO acetylation has emerged as mechanism to recruit specifically bromodomains; bromodomain are generally linked with gene activation. These findings strengthen the idea of a bidirectional sumo-/acetylation switch in gene regulation. Quantitative proteomics has highlighted that global sumoylation provides a dynamic response to protein damage involving SUMO chain-mediated protein degradation, but also SUMO E3 ligase-dependent transcription of HSP (Heat-shock protein genes. With these insights in SUMO function and novel technical advancements, we can now study SUMO dynamics in responses to (abiotic stress in plants.

  6. Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator

    DEFF Research Database (Denmark)

    Usaite, Renata; Jewett, Michael Christopher; Soberano de Oliveira, Ana Paula

    2009-01-01

    identified Snf1's global regulation on gene and protein expression levels, and showed that yeast Snf1 has a far more extensive function in controlling energy metabolism than reported earlier. Additionally, we identified complementary roles of Snf1 and Snf4. Similar to the function of AMPK in humans, our...... findings showed that Snf1 is a low-energy checkpoint and that yeast can be used more extensively as a model system for studying the molecular mechanisms underlying the global regulation of AMPK in mammals, failure of which leads to metabolic diseases....

  7. Global output regulation of a class of lower triangular nonlinear systems with unknown control direction via output feedback

    Science.gov (United States)

    Li, Ranran

    2016-05-01

    In this paper, we study the global output regulation problem of a class of lower triangular systems under measurement output feedback. A novel high-gain filter is proposed to estimate the unmeasured states of the systems. Furthermore, we integrate the robust stabilisation technique and Nussbaumgain technique to achieve asymptotic regulation when the control direction is unknown. The simulation results illustrate the effectiveness of the proposed method.

  8. State - Level Regulation's Effectiveness in Addressing Global Climate Change and Promoting Solar Energy Deployment

    Science.gov (United States)

    Peterman, Carla Joy

    Paper 1, Local Solutions to Global Problems: Climate Change Policies and Regulatory Jurisdiction, considers the efficacy of various types of environmental regulations when they are applied locally to pollutants whose damages extend beyond the jurisdiction of the local regulators. Local regulations of a global pollutant may be ineffective if producers and consumers can avoid them by transacting outside the reach of the local regulator. In many cases, this may involve the physical relocation of the economic activity, a problem often referred to as "leakage." This paper highlights another way in which local policies can be circumvented: through the shuffling of who buys from whom. The paper maintains that the problems of reshuffling are exacerbated when the options for compliance with the regulations are more flexible. Numerical analyses is presented demonstrating that several proposed policies to limit greenhouse gas emissions from the California electricity sector may have very little effect on carbon emissions if they are applied only within that state. Paper 1 concludes that although local subsidies for energy efficiency, renewable electricity, and transportation biofuels constitute attempts to pick technology winners, they may be the only mechanisms that local jurisdictions, acting alone, have at their disposal to address climate change. Paper 2, Pass-Through of Solar PV Incentives to Consumers: The Early Years of California's Solar PV Incentives, examines the pass through of incentives to California solar PV system owners. The full post-subsidy price consumers pay for solar power is a key metric of the success of solar PV incentive programs and of overall PV market performance. This study examines the early years of California's most recent wave of distributed solar PV incentives (2000-2008) to determine the pass-through of incentives. Examination of this period is both intellectually and pragmatically important due to the high level of incentives provided and

  9. High-resolution detection of DNA binding sites of the global transcriptional regulator GlxR in Corynebacterium glutamicum

    DEFF Research Database (Denmark)

    Jungwirth, Britta; Sala, Claudia; Kohl, Thomas A;

    2013-01-01

    The transcriptional regulator GlxR has been characterized as a global hub within the gene-regulatory network of Corynebacterium glutamicum. Chromatin immunoprecipitation with a specific anti-GlxR antibody and subsequent high-throughput sequencing (ChIP-seq) was applied to C. glutamicum to get new...

  10. Effect of Scarification, Self-Inhibition, and Sowing Depth on Seed Germination of Lupinus campestris Efecto de la Escarificación, Autoinhibición y Profundidad de Siembra sobre la Germinación de Semillas de Lupinus campestris

    OpenAIRE

    Pedro Gutiérrez Nava; Fernando De León González; Jorge Etchevers Barra; Alejandro Casas Fernández

    2010-01-01

    Lupinus campestris Schltdl. & Cham. grows in shallow fields and disturbed areas of Central Mexico. It has potential to improve soil fertility and as fodder. Seeds of L. campestris show dormancy, and the technology needed to increase its potential use requires information about conditions favouring seed germination. The aim of this study was to evaluate the seed germination responseof L. campestris under controlled (laboratory) and natural field conditions. Under laboratory conditions, 2 yr ol...

  11. Global analysis of SUMO chain function reveals multiple roles in chromatin regulation.

    Science.gov (United States)

    Srikumar, Tharan; Lewicki, Megan C; Costanzo, Michael; Tkach, Johnny M; van Bakel, Harm; Tsui, Kyle; Johnson, Erica S; Brown, Grant W; Andrews, Brenda J; Boone, Charles; Giaever, Guri; Nislow, Corey; Raught, Brian

    2013-04-01

    Like ubiquitin, the small ubiquitin-related modifier (SUMO) proteins can form oligomeric "chains," but the biological functions of these superstructures are not well understood. Here, we created mutant yeast strains unable to synthesize SUMO chains (smt3(allR)) and subjected them to high-content microscopic screening, synthetic genetic array (SGA) analysis, and high-density transcript profiling to perform the first global analysis of SUMO chain function. This comprehensive assessment identified 144 proteins with altered localization or intensity in smt3(allR) cells, 149 synthetic genetic interactions, and 225 mRNA transcripts (primarily consisting of stress- and nutrient-response genes) that displayed a >1.5-fold increase in expression levels. This information-rich resource strongly implicates SUMO chains in the regulation of chromatin. Indeed, using several different approaches, we demonstrate that SUMO chains are required for the maintenance of normal higher-order chromatin structure and transcriptional repression of environmental stress response genes in budding yeast.

  12. Global regulation of gene expression and cell differentiation in Caulobacter crescentus in response to nutrient availability.

    Science.gov (United States)

    England, Jennifer C; Perchuk, Barrett S; Laub, Michael T; Gober, James W

    2010-02-01

    In a developmental strategy designed to efficiently exploit and colonize sparse oligotrophic environments, Caulobacter crescentus cells divide asymmetrically, yielding a motile swarmer cell and a sessile stalked cell. After a relatively fixed time period under typical culture conditions, the swarmer cell differentiates into a replicative stalked cell. Since differentiation into the stalked cell type is irreversible, it is likely that environmental factors such as the availability of essential nutrients would influence the timing of the decision to abandon motility and adopt a sessile lifestyle. We measured two different parameters in nutrient-limited chemostat cultures, biomass concentration and the ratio of nonstalked to stalked cells, over a range of flow rates and found that nitrogen limitation significantly extended the swarmer cell life span. The transcriptional profiling experiments described here generate the first comprehensive picture of the global regulatory strategies used by an oligotroph when confronted with an environment where key macronutrients are sparse. The pattern of regulated gene expression in nitrogen- and carbon-limited cells shares some features in common with most copiotrophic organisms, but critical differences suggest that Caulobacter, and perhaps other oligotrophs, have evolved regulatory strategies to deal distinctly with their natural environments. We hypothesize that nitrogen limitation extends the swarmer cell lifetime by delaying the onset of a sequence of differentiation events, which when initiated by the correct combination of external environmental cues, sets the swarmer cell on a path to differentiate into a stalked cell within a fixed time period.

  13. Association of the Cytoplasmic Membrane Protein XpsN with the Outer Membrane Protein XpsD in the Type II Protein Secretion Apparatus of Xanthomonas campestris pv. Campestris

    Science.gov (United States)

    Lee, Hsien-Ming; Wang, Kuan-Cheng; Liu, Yi-Ling; Yew, Hsin-Yan; Chen, Ling-Yun; Leu, Wei-Ming; Chen, David Chanhen; Hu, Nien-Tai

    2000-01-01

    An xps gene cluster composed of 11 open reading frames is required for the type II protein secretion in Xanthomonas campestris pv. campestris. Immediately upstream of the xpsD gene, which encodes an outer membrane protein that serves as the secretion channel by forming multimers, there exists an open reading frame (previously designated ORF2) that could encode a protein of 261 amino acid residues. Its N-terminal hydrophobic region is a likely membrane-anchoring sequence. Antibody raised against this protein could detect in the wild-type strain of X. campestris pv. campestris a protein band with an apparent molecular mass of 36 kDa by Western blotting. Its aberrant slow migration in sodium dodecyl sulfate-polyacrylamide gels might be due to its high proline content. We designated this protein XpsN. By constructing a mutant strain with an in-frame deletion of the chromosomal xpsN gene, we demonstrated that it is required for the secretion of extracellular enzyme by X. campestris pv. campestris. Subcellular fractionation studies indicated that the XpsN protein was tightly associated with the membrane. Sucrose gradient sedimentation followed by immunoblot analysis revealed that it primarily appeared in the cytoplasmic membrane fractions. Immune precipitation experiments indicated that the XpsN protein was coprecipitated with the XpsD protein. In addition, the XpsN protein was co-eluted with the (His)6-tagged XpsD protein from the metal affinity chromatography column. All observations suggested that the XpsN protein forms a stable complex with the XpsD protein. In addition, immune precipitation analysis of the XpsN protein with various truncated XpsD proteins revealed that the C-terminal region of the XpsD protein between residues 650 and 759 was likely to be involved in complex formation between the two. PMID:10692359

  14. Involvement of bacterial TonB-dependent signaling in the generation of an oligogalacturonide damage-associated molecular pattern from plant cell walls exposed to Xanthomonas campestris pv. campestris pectate lyases

    Directory of Open Access Journals (Sweden)

    Vorhölter Frank-Jörg

    2012-10-01

    Full Text Available Abstract Background Efficient perception of attacking pathogens is essential for plants. Plant defense is evoked by molecules termed elicitors. Endogenous elicitors or damage-associated molecular patterns (DAMPs originate from plant materials upon injury or pathogen activity. While there are comparably well-characterized examples for DAMPs, often oligogalacturonides (OGAs, generated by the activity of fungal pathogens, endogenous elicitors evoked by bacterial pathogens have been rarely described. In particular, the signal perception and transduction processes involved in DAMP generation are poorly characterized. Results A mutant strain of the phytopathogenic bacterium Xanthomonas campestris pv. campestris deficient in exbD2, which encodes a component of its unusual elaborate TonB system, had impaired pectate lyase activity and caused no visible symptoms for defense on the non-host plant pepper (Capsicum annuum. A co-incubation of X. campestris pv. campestris with isolated cell wall material from C. annuum led to the release of compounds which induced an oxidative burst in cell suspension cultures of the non-host plant. Lipopolysaccharides and proteins were ruled out as elicitors by polymyxin B and heat treatment, respectively. After hydrolysis with trifluoroacetic acid and subsequent HPAE chromatography, the elicitor preparation contained galacturonic acid, the monosaccharide constituent of pectate. OGAs were isolated from this crude elicitor preparation by HPAEC and tested for their biological activity. While small OGAs were unable to induce an oxidative burst, the elicitor activity in cell suspension cultures of the non-host plants tobacco and pepper increased with the degree of polymerization (DP. Maximal elicitor activity was observed for DPs exceeding 8. In contrast to the X. campestris pv. campestris wild type B100, the exbD2 mutant was unable to generate elicitor activity from plant cell wall material or from pectin. Conclusions To our

  15. Produção e caracterização de anticorpos policlonais contra Xanthomonas campestris pv. viticola Production and characterization of polyclonal antibodies against Xanthomonas campestris pv. viticola

    OpenAIRE

    2005-01-01

    O objetivo deste trabalho foi a produção de anticorpos policlonais contra Xanthomonas campestris pv. viticola e sua caracterização pelo método Elisa indireto. Os resultados apontaram a qualidade dos anticorpos policlonais produzidos, os quais mostraram-se altamente reativos e específicos para o patovar com potencial para ser empregado no diagnóstico da doença e em programas de certificação.The objective of this work was to produce polyclonal antibodies against Xanthomonas campestris pv. vitic...

  16. The United Nations and One Health: the International Health Regulations (2005) and global health security.

    Science.gov (United States)

    Nuttall, I; Miyagishima, K; Roth, C; de La Rocque, S

    2014-08-01

    The One Health approach encompasses multiple themes and can be understood from many different perspectives. This paper expresses the viewpoint of those in charge of responding to public health events of international concern and, in particular, to outbreaks of zoonotic disease. Several international organisations are involved in responding to such outbreaks, including the United Nations (UN) and its technical agencies; principally, the Food and Agriculture Organization of the UN (FAO) and the World Health Organization (WHO); UN funds and programmes, such as the United Nations Development Programme, the World Food Programme, the United Nations Environment Programme, the United Nations Children's Fund; the UN-linked multilateral banking system (the World Bank and regional development banks); and partner organisations, such as the World Organisation for Animal Health (OIE). All of these organisations have benefited from the experiences gained during zoonotic disease outbreaks over the last decade, developing common approaches and mechanisms to foster good governance, promote policies that cut across different sectors, target investment more effectively and strengthen global and national capacities for dealing with emerging crises. Coordination among the various UN agencies and creating partnerships with related organisations have helped to improve disease surveillance in all countries, enabling more efficient detection of disease outbreaks and a faster response, greater transparency and stakeholder engagement and improved public health. The need to build more robust national public human and animal health systems, which are based on good governance and comply with the International Health Regulations (2005) and the international standards set by the OIE, prompted FAO, WHO and the OIE to join forces with the World Bank, to provide practical tools to help countries manage their zoonotic disease risks and develop adequate resources to prevent and control disease

  17. A Surfactant-Induced Functional Modulation of a Global Virulence Regulator from Staphylococcus aureus.

    Directory of Open Access Journals (Sweden)

    Sukhendu Mandal

    Full Text Available Triton X-100 (TX-100, a useful non-ionic surfactant, reduced the methicillin resistance in Staphylococcus aureus significantly. Many S. aureus proteins were expressed in the presence of TX-100. SarA, one of the TX-100-induced proteins, acts as a global virulence regulator in S. aureus. To understand the effects of TX-100 on the structure, and function of SarA, a recombinant S. aureus SarA (rSarA and its derivative (C9W have been investigated in the presence of varying concentrations of this surfactant using various probes. Our data have revealed that both rSarA and C9W bind to the cognate DNA with nearly similar affinity in the absence of TX-100. Interestingly, their DNA binding activities have been significantly increased in the presence of pre-micellar concentration of TX-100. The increase of TX-100 concentrations to micellar or post-micellar concentration did not greatly enhance their activities further. TX-100 molecules have altered the secondary and tertiary structures of both proteins to some extents. Size of the rSarA-TX-100 complex appears to be intermediate to those of rSarA and TX-100. Additional analyses show a relatively moderate interaction between C9W and TX-100. Binding of TX-100 to C9W has, however, occurred by a cooperative pathway particularly at micellar and higher concentrations of this surfactant. Taken together, TX-100-induced structural alteration of rSarA and C9W might be responsible for their increased DNA binding activity. As TX-100 has stabilized the somewhat weaker SarA-DNA complex effectively, it could be used to study its structure in the future.

  18. EMERGING TRENDS IN REGULATORY DEVELOPMENTS FOR BIOSIMILARS: RECENT ADVANCES IN GLOBAL AND INDIAN REGULATIONS

    Directory of Open Access Journals (Sweden)

    Shah Kalpesh

    2012-08-01

    Full Text Available Biopharmaceutical drugs have outperformed the pharmaceutical market as a whole largely due to two factors: they address areas of clinical need that are unmanageable with conventional therapeutics (including cancers and they are able to command a premium price. With expiry of patent of many biopharmaceutical drugs, the potential of a sizeable market will attract several generic companies. However the process to develop essentially generic version of biopharmaceuticals (biosimilars is more complex than that of developing a generic copy of a chemical-based compound. These products are approved through an abbreviated route which relies on limited safety and efficacy data enabling the generic companies to keep the production costs low and pass on the price benefit to the patient and make the product affordable to the masses. There are no common regulatory pathways and many countries have published guidelines and it is still evolving in other countries. WHO (World Health Organization, Europe and recently USA have published guidelines for the development and marketing of biosimilar products. These products undergo extensive head to head comparability testing with the reference biopharmaceutical product to show their similarity to the reference product in terms of quality, efficacy and safety. Regulators and administrators of different countries need to strike a balance in cost-to-benefit versus risks that are perceived for these products, keeping in mind global regulatory issues. India's biotechnology industry has been growing towards new heights in conjunction with the economic evolution. The practical way forward for approval of biosimilars in India would have to be unique to the Indian context as it should balance the scientific aspects and consider needs and limitation of the country.

  19. Chemical characterization of Xanthan biopolymers synthesized by Xanthomonas campestris pv pruni strains; Caracterizacao quimica de biopolimeros sintetizados por Xanthomonas campestris pv pruni

    Energy Technology Data Exchange (ETDEWEB)

    Moreira, Angelita da S.; Vendruscolo, Claire T.; Furlan, Ligia [Universidade Federal de Pelotas, RS (Brazil). Centro de Biotecnologia]. E-mail: angelita@ufpel.tche.br; claire@ufpel.tche.br; ligia@ufpel.tche.br; Galland, Griselda [Rio Grande do Sul Univ., Porto Alegre, RS (Brazil). Inst. de Qumica

    2001-07-01

    In this work we describe the characterisation of Xanthan biopolymers synthesized by two Xanthomonas campestris pv pruni strains, in aerobic fermentation. By chromatography on TLC we could notice the presence of Mannose monomer in higher proportion in the 82 strain with relation to the another ones. The viscosity results showed the temperature dependence. The 06 and 82 strains had their viscosity increased whereas for the 87 strain we could observe a reduction with temperature increasing. The {sup 13}C NMR spectrum of 87 strain showed the characteristic signals at approximately 92.8, 70.4 and 61.4 ppm, attributed to C1, C4 and C6 from glucose monomer, with higher intensity. (author)

  20. IDENTIFICATION OF ANTAGONISTS OF Xanthomonas campestris ISOLATED FROM RHIZOSPHERE ZONE OF BROCCOLI FARM AT KEMBANG MERTA VILLAGE, TABANAN, BALI

    Directory of Open Access Journals (Sweden)

    Nadya Treesna Wulansari

    2015-03-01

    Full Text Available The main objectives of this research were to isolate and identify antagonists of Xanthomonas campestris from rhizosphere zone of broccoli plants. Soil samples were collected from broccoli farm located at Kembang Merta village, Tabanan, Bali. Isolation and identification of the antagonists were conducted at the Laboratory of Microbiology, Udayana University. Two fungal (Trichoderma harzianum and Trichoderma viride and two bacterial (Bacillus sp. and Pseudomonas sp. antagonists potentially to be developed as biocontrol agents of Xanthomonas campestris were successfully identified in this research

  1. Scientific Opinion on the pest categorisation of Xanthomonas campestris pv. vesicatoria (Doidge Dye

    Directory of Open Access Journals (Sweden)

    EFSA Panel on Plant Health (PLH

    2014-06-01

    Full Text Available The European Commission requested the EFSA Panel on Plant Health to perform the pest categorisation for Xanthomonas campestris pv. vesicatoria, which is the causal agent of bacterial spot of tomato and pepper. X. campestris pv. vesicatoria is not a single taxonomic entity, and four separate species have been described:    X. vesicatoria, X. euvesicatoria, X. perforans and X. gardneri. These organisms can be accurately identified based on a range of discriminative methods. Detection methods are available for seeds. Among the four species described within X. campestris pv. vesicatoria, all except X. gardneri were reported to be present in the EU territory. The host plants (tomato and pepper are cultivated throughout Europe and conditions are conducive to disease development in open fields in southern Europe and in greenhouses. The disease causes a range of symptoms on aerial parts of plants including fruits. Contaminated seeds and transplants are responsible for long-distance dissemination of the pathogen. Control is mainly based on prevention and exclusion. Extraction of seeds from fruit debris using fermentation and acid treatments and thermotherapy treatments were shown to be effective in reducing the bacterial load in seed lots. No methods and chemical control agents are available that effectively control xanthomonads in infected crops. Although no recent data are available on economic losses caused by these pathogens in the EU, the organisms are considered important bacterial pathogens of tomato and pepper. Infections resulting in up to 30 % losses have been reported. Xanthomonads causing bacterial spot of tomato and pepper meet all criteria defined in International Standard for Phytosanitary Measures (ISPM 21 and they also meet all ISPM 11 criteria, although X. vesicatoria, X. euvesicatoria and X. perforans are present in the EU territory.

  2. Searching for a trace of Artemisia campestris pollen in the air

    Directory of Open Access Journals (Sweden)

    Łukasz Grewling

    2015-12-01

    Full Text Available The aim of the study was to determinate whether Artemisia campestris was present in the vicinity of 8 pollen monitoring stations in Poland by examining temporal variations in daily average airborne Artemisia pollen data recorded by Hirst type volumetric traps. Three day moving averages of airborne Artemisia pollen were examined by Spearman’s rank correlation test. Results show that Artemisia pollen seasons in Poland generally display similar unimodal patterns (correlation coefficients r > 0.900; P < 0.05. The only exception was the Artemisia pollen concentration noted in the outskirts of Poznań (Morasko, where the bimodal pattern was revealed. Correlations between Artemisia pollen data recorded at Poznań-Morasko and the other Polish sites were the lowest in the investigated dataset; this was particularly noticeable in the second part of pollen season (r ~0.730. We show that the typical bimodal pattern in Artemisia pollen seasons, which is characteristic of the presence of both A. vulgaris (first peak and A. campestris (second peak, does not occur at the majority of sites in Poland and is restricted to the outskirts of Poznań. In fact, it was noted that the pollen monitoring site in Poznań-Centre, just 8 km from Morasko, only exhibited one peak (attributed to A. vulgaris. This shows that the influence of A. campestris on airborne pollen season curves is limited and can be largely disregarded. In addition, this study supports previous records showing that the spatial distribution of airborne Artemisia pollen within a city (urban-rural gradient can vary markedly, depending on the species composition.

  3. Interspecific Hybridization of Brassica campestris x B.Oleracea Through Ovary Culture

    Institute of Scientific and Technical Information of China (English)

    ZHANG Guo-qing; SONG Wen-jian; TANG Gui-xiang; ZHOU Wei-jun

    2004-01-01

    Using three varieties of Brassica campestris, Hauarad (708), Maoshan-3 (714) and Youbai (715),as the maternal plants and one variety of Brassica oleracea Jingfeng-1 (6012) as paternal plants, crosses were made to produce interspecific hybrids through ovary culture techniques.The ovaries from the cross between B. campestris × B.oleracea (708 × 6012 and 714 × 6012) were cultured and ovary culture was more effective in terms of obtained seeds when ovaries were cultured in vitro at 9 d after pollination (DAP). While for the cross of 715 × 6012, it was better when ovaries in vitro cultured at 12 DAP. Among three cross combinations, the cross of 714 × 6012 showed the best response and 43 seeds per ovary were obtained. Among the media studied, the ovaries from the cross of 708 × 6012 cultured on MS media supplemented with 3.0 mg L-1 BA × 0.1 mg L-1 NAA showed better response, and its rate of seeds per ovary reached 44.0%.While the ovaries from the other two crosses (714 × 6012 and 715 × 6012) showed the best response when cultured on B5 media supplemented with 3.0 mg L-1 BA + 0.2 mg L-1 NAA, and the rates of seeds per ovary reached 72.0 and 60.0%, respectively. All seeds obtained from the three cross combinations were cultured on the MS media supplemented with 1.0 mg L-1 BA + 0.05 mg L-1 NAA,and the seeds from the cross of 715 × 6012 showed the best germination response and the percentage of germinations reached 66.7%. The regenerated plantlets were obtained from these seedlings after cultured on the MS media supplemented with 0.05 mg L-1 NAA. Cytological study showed that these regenerated plants were all true hybrids of B.campestris × B.oleracea.

  4. Flavonóides O-glicosilados de Croton campestris St. Hill. (Euphorbiaceae)

    OpenAIRE

    Santos,Paula M.L. dos; Schripsema, Jan; Kuster, Ricardo M

    2005-01-01

    Do extrato butanólico de Croton campestris St. Hill. (Euphorbiaceae) foram isolados quatro flavonóides, todos O-glicosídeos da quercetina. Estas substâncias foram identificadas como 3-O-b-D-apiofuranosil-(1®2)-galactopiranosil quercetina (1), 3-O-b-D-galactopiranosil quercetina (hiperina) (2), 3-O-a-L-arabinopiranosil quercetina (guaijaverina) (3) e 3-O-a-L-ramnopiranosil quercetina (quercitrina) (4).O presente trabalho relata a presença destas substâncias pela primeira vez para esta espécie ...

  5. Limpeza clonal de mudas de videira infectadas por Xanthomonas campestris pv. viticola

    OpenAIRE

    2013-01-01

    O cancro bacteriano da videira é causado por Xanthomonas campestris pv. viticola (Xcv). Visando à limpeza clonal de mudas de 'Red Globe', foram estudados: tamanho ideal de ápices e gemas axilares para cultivo em meio de Galzy modificado (MGM); efeito da termoterapia (38ºC/30 dias); e ação de antibióticos na eliminação de Xcv em videiras infectadas. Os percentuais de contaminação por Xcv e de regeneração foram analisados, e as plantas obtidas foram indexadas em meio ágar nutritivo-dextrose-ext...

  6. Identificação de potenciais plantas hospedeiras alternativas de Xanthomonas campestris pv. Viticola.

    OpenAIRE

    2014-01-01

    Este estudo teve como objetivo identificar possíveis hospedeiras alternativas de Xanthomonas campestris pv. viticola (Xcv), visando a fornecer subsídios para o manejo do cancro bacteriano da videira. Vinte e seis espécies vegetais foram inoculadas artificialmente com o isolado Xcv3 e mantidas em condições de casa de vegetação, sendo avaliada a evolução sintomatológica da doença, como manchas necróticas angulares e lesões nas nervuras. O Xcv3 foi reisolado a partir de cada hospedeiro alternati...

  7. Diagnose molecular do cancro bacteriano da videira causado por Xanthomonas campestris pv. viticola

    OpenAIRE

    2009-01-01

    A bactéria Xanthomonas campestris pv. viticola (Nayudu) Dye, agente do cancro bacteriano da videira, foi relatada pela primeira vez nas áreas irrigadas do Submédio do Vale São Francisco em Petrolina, Pernambuco, em 1998. A doença também foi identificada em Juazeiro, Bahia, e posteriormente no Piauí, no Ceará, Roraima e Goiás. O uso de material propagativo livre do patógeno tornou-se uma preocupação, uma vez que a ocorrência da bacteriose ainda esta restrita a essas regiões no p...

  8. Sobrevivência de Xanthomonas campestris pv. viticola em tecido infectado de videira.

    OpenAIRE

    2012-01-01

    Tecidos de plantas infectados constituem uma importante fonte de inóculo primário para fitobacterioses. O objetivo deste trabalho foi investigar a sobrevivência de Xanthomonas campestris pv. viticola (Xcv), agente do cancro bacteriano da videira, em tecidos infectados na superfície do solo e durante a compostagem de restos de poda. Mudas de videira 'Festival' foram inoculadas com mutante resistente à rifampicina Xcv2Rif e mantidas em casa de vegetação até apresentarem alta severidade da doenç...

  9. RAPESEED (Brassica napus and Brassica campestris) A NEW OILSEED CROP FOR TURKEY

    OpenAIRE

    KURAL, Aynur

    1995-01-01

    Rapeseed (Brassica napus and Brassica campestris L.) is an important oil crop in many parts of the world. Rapeseed is well-adapted to cool, moist growing conditions and requires fewer heat units than either soybean or sunflower for maturity. Rapeseed oil can be used for human consumption (Canola) and ındustrial purposes. Oil from Canola cultivars must contain less than 2% erucic acid compared with 40-45% in industrial use rape varieties. The meal remaining after oil extraction of Canola seed ...

  10. Cooperative Semi-Global Output Regulation of Nonlinear Strict-Feedback Multi-Agent Systems With Nonidentical Relative Degrees.

    Science.gov (United States)

    Su, Youfeng

    2016-03-03

    In this paper, we study the cooperative semi-global output regulation problem for a class of nonlinear strict-feedback multi-agent systems, where the subsystems are assumed to have nonidentical relative degrees. We first introduce the so-called distributed internal model that converts our problem into the cooperative semi-global stabilization problem of the corresponding augmented system composed of the original multi-agent system and the internal model. We then put this augmented system into the general block lower triangular form, and develop the block semi-global backstepping technique to stabilize it. Comparing with some existing literatures, our design has removed the identical relative degree assumption, and hence applies to a much larger group of nonlinear multi-agent systems.

  11. Indirect field-oriented control of induction motors is globally asymptotically stable when used to regulate position in rigid robots

    Science.gov (United States)

    Hernández-Guzmán, Victor M.; Santibáñez, Victor; Silva-Ortigoza, Ramón

    2010-10-01

    In this note we prove, for the first time, that indirect field-oriented control of voltage-fed induction motors achieves global asymptotic stability when used to regulate position in rigid robots. This results in the simplest controller proposed until now to solve this problem. Our stability analysis considers inner current loops driven by linear PI controllers and an external position loop driven by a saturated PD controller.

  12. HrpA, a DEAH-box RNA helicase, is involved in global gene regulation in the Lyme disease spirochete.

    Directory of Open Access Journals (Sweden)

    Aydan Salman-Dilgimen

    Full Text Available Spirochetes causing Lyme borreliosis are obligate parasites that can only be found in a tick vector or a vertebrate host. The ability to survive in these two disparate environments requires up and downregulation of specific genes by regulatory circuits that remain largely obscure. In this work on the Lyme spirochete, B. burgdorferi, we show that a disruption of the hrpA gene, which encodes a putative RNA helicase, results in a complete loss in the ability of the spirochetes to infect mice by needle inoculation. Studies of protein expression in culture by 2D gels revealed a change in the expression of 33 proteins in hrpA clones relative to the wild-type parent. Quantitative characterization of protein expression by iTRAQ analysis revealed a total of 187 differentially regulated proteins in an hrpA background: 90 downregulated and 97 upregulated. Forty-two of the 90 downregulated and 65 of the 97 upregulated proteins are not regulated under any conditions by the previously reported regulators in B. burgdorferi (bosR, rrp2, rpoN, rpoS or rrp1. Downregulated and upregulated proteins also fell into distinct functional categories. We conclude that HrpA is part of a new and distinct global regulatory pathway in B. burgdorferi gene expression. Because an HrpA orthologue is present in many bacteria, its participation in global regulation in B. burgdorferi may have relevance in other bacterial species where its function remains obscure. We believe this to be the first report of a role for an RNA helicase in a global regulatory pathway in bacteria. This finding is particularly timely with the recent growth of the field of RNA regulation of gene expression and the ability of RNA helicases to modulate RNA structure and function.

  13. Regulating Extraction in Africa: Towards a Framework for Accountability in the Global South

    Directory of Open Access Journals (Sweden)

    Hany Gamil Besada

    2015-06-01

    Full Text Available This paper explores how revenue flows from the extractive sector can have substantial multiplier effects on the rest of the economy in resource-endowed countries in the Global South. The aim is to demonstrate that in order to fully benefit from extraction practices, countries in the Global South must adopt measures to address issues such as weak governance, the exploitative practices of foreign investors, mismanagement, corruption, undervaluation of mineral assets, revenue mismanagement, and various forms of taxation manipulation and evasion. Through literature examples in various African countries, this research concludes that the Global South should focus on constructing national regulatory frameworks that emphasise revenue transparency.

  14. Connecting the Dots: How U.S. Global Health Programs Can Improve International Health Regulation Compliance

    Science.gov (United States)

    2014-12-01

    the budget allocated to AFHSC is projected to grow by $6.053 million for the purpose of biosurveillance .167 The strategic model for the organization...Response System,” AFHSC. 166 Melinda Moore, Gail Fisher, and Clare Stevens, Toward Integrated DoD Biosurveillance : Assessment and Opportunities (Santa...L. Russell et al., “The Global Emerging Infection Surveillance and Response System (GEIS), a U.S. Government Tool for Improved Global Biosurveillance

  15. Pyranose Dehydrogenase from Agaricus campestris and Agaricus xanthoderma: Characterization and Applications in Carbohydrate Conversions

    Directory of Open Access Journals (Sweden)

    Clemens K. Peterbauer

    2013-08-01

    Full Text Available Pyranose dehydrogenase (PDH is a flavin-dependent sugar oxidoreductase that is limited to a rather small group of litter-degrading basidiomycetes. The enzyme is unable to utilize oxygen as an electron acceptor, using substituted benzoquinones and (organo metal ions instead. PDH displays a broad substrate specificity and intriguing variations in regioselectivity, depending on substrate, enzyme source and reaction conditions. In contrast to the related enzyme pyranose 2-oxidase (POx, PDHs from several sources are capable of oxidizing α- or β-1→4-linked di- and oligosaccharides, including lactose. PDH from A. xanthoderma is able to perform C-1 and C-2 oxidation, producing, in addition to lactobionic acid, 2-dehydrolactose, an intermediate for the production of lactulose, whereas PDH from A. campestris oxidizes lactose nearly exclusively at the C-1 position. In this work, we present the isolation of PDH-encoding genes from A. campestris (Ac and A. xanthoderma (Ax and a comparison of other so far isolated PDH-sequences. Secretory overexpression of both enzymes in Pichia pastoris was successful when using their native signal sequences with yields of 371 U·L−1 for AxPDH and 35 U·L−1 for AcPDH. The pure enzymes were characterized biochemically and tested for applications in carbohydrate conversion reactions of industrial relevance.

  16. Uptake and transformation of arsenic during the reproductive life stage of Agaricus bisporus and Agaricus campestris.

    Science.gov (United States)

    Nearing, Michelle M; Koch, Iris; Reimer, Kenneth J

    2016-11-01

    Fruiting bodies from the Agaricus genus have been found to contain non-toxic arsenobetaine (AB) as a major compound. It is unknown whether AB is formed during the vegetative or reproductive life stages of the fungus, or by the surrounding microbial community, but AB's structural similarity to glycine betaine has led to the hypothesis that AB may be adventitiously accumulated as an osmolyte. To investigate the potential formation of AB during the reproductive life stage of Agaricus species, growth substrate and fungi were collected during the commercial growth of Agaricus bisporus and analyzed for arsenic speciation using HPLC-ICP-MS. AB was found to be the major arsenic compound in the fungus at the earliest growth stage of fruiting (the primordium). The growth substrate mainly contained arsenate (As(V)). The distribution of arsenic in an A. bisporus primordium grown on As(V) treated substrate, and in a mature Agaricus campestris fruiting body collected from arsenic contaminated mine tailings, was mapped using two dimensional XAS imaging. The primordium and stalk of the mature fruiting body were both found to be growing around pockets of substrate material containing higher As concentrations, and AB was found exclusively in the fungal tissues. In the mature A. campestris the highest proportion of AB was found in the cap, supporting the AB as an osmolyte hypothesis. The results have allowed us to pinpoint the fungus life stage at which AB formation takes place, namely reproduction, which provides a direction for further research.

  17. PECTATE LYASE-LIKE10 is associated with pollen wall development in Brassica campestris.

    Science.gov (United States)

    Jiang, Jingjing; Yao, Lina; Yu, Youjian; Lv, Meiling; Miao, Ying; Cao, Jiashu

    2014-11-01

    PECTATE LYASE-LIKE10 (PLL10) was previously identified as one of the differentially expressed genes both in microspores during the late pollen developmental stages and in pistils during the fertilization process in Chinese cabbage (Brassica campestris ssp. chinensis). Here, antisense-RNA was used to study the functions of BcPLL10 in Chinese cabbage. Abnormal pollen was identified in the transgenic lines (bcpll10-4, -5, and -6). In fertilization experiments, fewer seeds were harvested when the antisense-RNA lines were used as pollen donor. In vivo and in vitro pollen germination assays less germinated pollen tubes were observed in bcpll10 lines. Scanning electron microscopy observation verified that the tryphine materials were over accumulated around the pollen surface and sticked them together in bcpll10. Moreover, transmission electron microscopy observation revealed that the internal endintine was overdeveloped and predominantly occupied the intine, and disturbed the normal proportional distribution of the two layers in the non-germinal furrow region; and no obvious demarcation existed between them in the germinal furrow region in the bcpll10 pollen. Collectively, this study presented a novel PLL gene that played an important role during the pollen wall development in B. campestris, which may also possess potential importance for male sterility usage in agriculture.

  18. PECTATE LYASE-LIKE10 is associated with pollen wall development in Brassica campestris

    Institute of Scientific and Technical Information of China (English)

    Jingjing Jiang; Lina Yao; Youjian Yu; Meiling Lv; Ying Miao; Jiashu Cao

    2014-01-01

    PECTATE LYASE‐LIKE10 (PLL10) was previously identified as one of the differentially expressed genes both in microspores during the late pollen developmental stages and in pistils during the fertilization process in Chinese cabbage (Brassica campestris ssp. chinensis). Here, antisense‐RNA was used to study the functions of BcPLL10 in Chinese cabbage. Abnormal pollen was identified in the transgenic lines (bcpll10‐4,‐5, and‐6). In fertilization experiments, fewer seeds were harvested when the antisense‐RNA lines were used as pollen donor. In vivo and in vitro pollen germination assays less germinated pollen tubes were observed in bcpll10 lines. Scanning electron microscopy observation verified that the tryphine materials were over accumulated around the pollen surface and sticked them together in bcpll10. Moreover, transmission electron microscopy observation revealed that the internal endintine was overdeveloped and predominantly occupied the intine, and disturbed the normal proportional distribution of the two layers in the non‐germinal furrow region; and no obvious demarcation existed between them in the germinal furrow region in the bcpll10 pollen. Collectively, this study presented a novel PLL gene that played an important role during the pollen wall development in B. campestris, which may also possess potential importance for male sterility usage in agriculture.

  19. Production of xanthan by in-flow cultures of Xanthomonas campestris

    Energy Technology Data Exchange (ETDEWEB)

    Roseiro, J.C.; Simoes, P.; Estevao, F.; Amaral-Collaco, M.T. (Laboratorio Nacional de Engenharia e Tecnologia Industrial, Dept. de Tecnologia das Industrias Quimicas, Unidade de Microbiologia Industrial - Biotecnologia, Lisbon (Portugal)); Emery, A.N. (Birmingham Univ. (United Kingdom). Centre for Biochemical Engineering)

    1993-03-01

    The kinetics of xanthan formation in Xanthomonas campestris continuous and fed-batch fermentations was studied along with metabolic changes due to growth rate variation. A maximum growth rate within the range 0.11-0.12 h[sup -1] was obtained from the continuous culture data in defined medium, producing xanthan at rates up to 0.36 g l[sup -1] h[sup -1] corresponding to a maximum 67% glucose conversion at a dilution rate (D) of 0.05 h[sup -1]. Comparatively, fed-batch cultivation was more efficient, producing maximum xanthan at 0.75 g l[sup -1] h[sup -1] and 63% glucose conversion at 0.1 h[sup -1]. When reaching D=0.062 h[sup -1] in continuous cultures, a change was observed and the values of the specific rate of substrate consumption shifted, initiating an uncoupled growth region expressing a lack of balance of the catabolic and anabolic reactions. The deviation was not accompanied by a change in specific xanthan production indicating that xanthan metabolism was not affected by D. For fed-batch-grown X. campestris cells within the range D=0.03-0.1 h[sup -1], both metabolic parameters changed linearly with the growth rate showing a wide region coupled to growth. Outside that range, glucose accummulated and the specific xanthan production dropped, suggesting substrate inhibition. (orig.).

  20. Phenotypic and genotypic characterization of Xanthomonas campestris strains isolated from cabbage, kale and broccoli

    Directory of Open Access Journals (Sweden)

    Popović Tatjana

    2013-01-01

    Full Text Available Thirty-six strains of Xanthomonas campestris pv. campestris (Xcc isolated from cabbage, kale and broccoli were identified according to their pathogenicity, phenotypic and genotypic characterization. Pathogenicity was confirmed by the injection method with a hypodermic syringe into the mesophilic tissue of cabbage leaves. All strains were Gramnegative, aerobic, catalase-positive, oxidase-negative, grew at 35°C, produced levan, H2S and indole, did not reduce nitrate, hydrolyzed Tween 80, starch, gelatin and esculin and did not show tolerance to 0.1 and 0.02% TTC. The strains produced acid from d-arabinose, arginine, dulcitol, galactose, d-glucose, maltose, mannose, sorbitol, sucrose and xylose. The genetic characterization was based on the sequence analyses of 16S rDNA and ERIC and BOX PCR. Strains of different pathovars were also used to compare PCR resulting patterns. BOX-PCR of the strains from kale and broccoli, obtained using (GTG5 primer, yielded patterns with a high similarity level to pathovar reference strain Xcc. The strains from cabbage yielded BOX and ERIC product patterns, distinguishing them from the other tested strains and reference strains. 16S rDNA of the representative strains was closely related to Xcc strain ATCC 33913. ERIC PCR and BOX using (GTG5 primer generated different Xcc patterns and were effective in distinguishing strains from different plant hosts. [Projekat Ministarstva nauke Republike Srbije, br. III43010 i br. III46007

  1. Ozone affects gas exchange, growth and reproductive development in Brassica campestris (Wisconsin fast plants).

    Science.gov (United States)

    Black, V J; Stewart, C A; Roberts, J A; Black, C R

    2007-01-01

    Exposure to ozone (O(3)) may affect vegetative and reproductive development, although the consequences for yield depend on the effectiveness of the compensatory processes induced. This study examined the impact on reproductive development of exposing Brassica campestris (Wisconsin Fast Plants) to ozone during vegetative growth. Plants were exposed to 70 ppb ozone for 2 d during late vegetative growth or 10 d spanning most of the vegetative phase. Effects on gas exchange, vegetative growth, reproductive development and seed yield were determined. Impacts on gas exchange and foliar injury were related to pre-exposure stomatal conductance. Exposure for 2 d had no effect on growth or reproductive characteristics, whereas 10-d exposure reduced vegetative growth and reproductive site number on the terminal raceme. Mature seed number and weight per pod and per plant were unaffected because seed abortion was reduced. The observation that mature seed yield per plant was unaffected by exposure during the vegetative phase, despite adverse effects on physiological, vegetative and reproductive processes, shows that indeterminate species such as B. campestris possess sufficient compensatory flexibility to avoid reductions in seed production.

  2. Cloning of a two-component signal transduction system of Xanthomonas campestris pv. phaseoli var. fuscans strain BXPF65

    DEFF Research Database (Denmark)

    Chan, JWYF; Maynard, Scott; Goodwin, PH

    1998-01-01

    A putative two-component signal transduction system was amplified and cloned from the plant pathogenic bacterium Xanthomonas campestris pv. phaseoli var. fuscans isolate BXPF65. The 620 bp amplified fragment was sequenced and analyzed with the BLAST Enhanced Alignment Utility (BEAUTY). BEAUTY ana...

  3. Acute and sub-acute toxicity studies of aqueous and methanol extracts of Nelsonia campestris in rats

    Institute of Scientific and Technical Information of China (English)

    Janet Mobolaji Olaniyan; Hadiza Lami Muhammad; Hussaini Anthony Makun; Musa Bola Busari; Abubakar Siddique Abdullah

    2016-01-01

    Objective: To evaluate the acute and sub-acute toxicity of aqueous and methanol ex-tracts of Nelsonia campestris (N. campestris) in rats. Methods: Acute oral toxicity study of aqueous and methanol extracts was carried out by administration of 10, 100, 1 000, 1 600, 2 900 and 5 000 mg/kg body weight of N. campestris extracts to rats in the respective groups. Sub-acute toxicity study was conducted by oral administration of the extracts at daily doses of 100, 300 and 600 mg/kg body weight to another group of rats for 28 days, while rats in the control group received 0.5 mL of normal saline. Results: The LD50 of the N. campestris extracts in rats was determined to be greater than 5 000 mg/kg body weight. There was no significant difference (P>0.05) between the test groups administered with aqueous and methanol extracts in relation to the control group for serum electrolytes (Na+, K+, Cl−, HCO3−), serum albumin, total and conjugated bili-rubin. Similarly, mean organ-to-body weight ratio and all haematological parameters (white blood cell, red blood cell, mean cell volume, mean corpuscular haemoglobin, mean corpuscular haemoglobin concentration, packed cell volume) evaluated were not significantly different (P > 0.05) from the control. There was a significant increase (P Conclusions: Intake of high doses of this plant extracts may exhibit mild organ toxicity.

  4. Asteraceae Artemisia campestris and Artemisia herba-alba Essential Oils Trigger Apoptosis and Cell Cycle Arrest in Leishmania infantum Promastigotes

    Science.gov (United States)

    Messaoud, Chokri; Haoues, Meriam; Neffati, Noura; Bassoumi Jamoussi, Imen; Essafi-Benkhadir, Khadija; Boussaid, Mohamed; Karoui, Habib

    2016-01-01

    We report the chemical composition and anti-Leishmania and antioxidant activity of Artemisia campestris L. and Artemisia herba-alba Asso. essential oils (EOs). Our results showed that these extracts exhibit different antioxidant activities according to the used assay. The radical scavenging effects determined by DPPH assay were of IC50 = 3.3 mg/mL and IC50 = 9.1 mg/mL for Artemisia campestris and Artemisia herba-alba essential oils, respectively. However, antioxidant effects of both essential oils, determined by ferric-reducing antioxidant power (FRAP) assay, were in the same range (2.3 and 2.97 mg eq EDTA/g EO, resp.), while the Artemisia herba-alba essential oil showed highest chelating activity of Fe2+ ions (27.48 mM Fe2+). Interestingly, we showed that both EOs possess dose-dependent activity against Leishmania infantum promastigotes with IC50 values of 68 μg/mL and 44 μg/mL for A. herba-alba and A. campestris, respectively. We reported, for the first time, that antileishmanial activity of both EOs was mediated by cell apoptosis induction and cell cycle arrest at the sub-G0/G1 phase. All our results showed that EOs from A. herba-alba and A. campestris plants are promising candidates as anti-Leishmania medicinal products. PMID:27807464

  5. Asteraceae Artemisia campestris and Artemisia herba-alba Essential Oils Trigger Apoptosis and Cell Cycle Arrest in Leishmania infantum Promastigotes

    Directory of Open Access Journals (Sweden)

    Zohra Aloui

    2016-01-01

    Full Text Available We report the chemical composition and anti-Leishmania and antioxidant activity of Artemisia campestris L. and Artemisia herba-alba Asso. essential oils (EOs. Our results showed that these extracts exhibit different antioxidant activities according to the used assay. The radical scavenging effects determined by DPPH assay were of IC50 = 3.3 mg/mL and IC50 = 9.1 mg/mL for Artemisia campestris and Artemisia herba-alba essential oils, respectively. However, antioxidant effects of both essential oils, determined by ferric-reducing antioxidant power (FRAP assay, were in the same range (2.3 and 2.97 mg eq EDTA/g EO, resp., while the Artemisia herba-alba essential oil showed highest chelating activity of Fe2+ ions (27.48 mM Fe2+. Interestingly, we showed that both EOs possess dose-dependent activity against Leishmania infantum promastigotes with IC50 values of 68 μg/mL and 44 μg/mL for A. herba-alba and A. campestris, respectively. We reported, for the first time, that antileishmanial activity of both EOs was mediated by cell apoptosis induction and cell cycle arrest at the sub-G0/G1 phase. All our results showed that EOs from A. herba-alba and A. campestris plants are promising candidates as anti-Leishmania medicinal products.

  6. Global transcriptional regulation by H-NS and its biological influence on the virulence of Enterohemorrhagic Escherichia coli.

    Science.gov (United States)

    Wan, Baoshan; Zhang, Qiufen; Tao, Jing; Zhou, Aiping; Yao, Yu-Feng; Ni, Jinjing

    2016-08-22

    As a global transcriptional regulator, H-NS, the histone-like nucleoid-associated DNA-binding and bridging protein, plays a wide range of biological roles in bacteria. In order to determine the role of H-NS in regulating gene transcription and further find out the biological significance of this protein in Enterohemorrhagic Escherichia coli (EHEC), we conducted transcriptome analysis of hns mutant by RNA sequencing. A total of 983 genes were identified to be regulated by H-NS in EHEC. 213 and 770 genes were down-regulated and up-regulated in the deletion mutant of hns, respectively. Interestingly, 34 of 97 genes on virulence plasmid pO157 were down-regulated by H-NS. Although the deletion mutant of hns showed a decreased survival rate in macrophage compared with the wild type strain, it exhibited the higher ability to colonize mice gut and became more virulent to BALB/c mice. The BALB/c mice infected with the deletion mutant of hns showed a lower survival rate, and a higher bacterial burden in the gut, compared with those infected with wild type strain, especially when the gut microbiota was not disturbed by antibiotic administration. These findings suggest that H-NS plays an important role in virulence of EHEC by interacting with host gut microbiota.

  7. Enhancing E. coli tolerance towards oxidative stress via engineering its global regulator cAMP receptor protein (CRP.

    Directory of Open Access Journals (Sweden)

    Souvik Basak

    Full Text Available Oxidative damage to microbial hosts often occurs under stressful conditions during bioprocessing. Classical strain engineering approaches are usually both time-consuming and labor intensive. Here, we aim to improve E. coli performance under oxidative stress via engineering its global regulator cAMP receptor protein (CRP, which can directly or indirectly regulate redox-sensing regulators SoxR and OxyR, and other ~400 genes in E. coli. Error-prone PCR technique was employed to introduce modifications to CRP, and three mutants (OM1~OM3 were identified with improved tolerance via H(2O(2 enrichment selection. The best mutant OM3 could grow in 12 mM H(2O(2 with the growth rate of 0.6 h(-1, whereas the growth of wild type was completely inhibited at this H(2O(2 concentration. OM3 also elicited enhanced thermotolerance at 48°C as well as resistance against cumene hydroperoxide. The investigation about intracellular reactive oxygen species (ROS, which determines cell viability, indicated that the accumulation of ROS in OM3 was always lower than in WT with or without H(2O(2 treatment. Genome-wide DNA microarray analysis has shown not only CRP-regulated genes have demonstrated great transcriptional level changes (up to 8.9-fold, but also RpoS- and OxyR-regulated genes (up to 7.7-fold. qRT-PCR data and enzyme activity assay suggested that catalase (katE could be a major antioxidant enzyme in OM3 instead of alkyl hydroperoxide reductase or superoxide dismutase. To our knowledge, this is the first work on improving E. coli oxidative stress resistance by reframing its transcription machinery through its native global regulator. The positive outcome of this approach may suggest that engineering CRP can be successfully implemented as an efficient strain engineering alternative for E. coli.

  8. Enhancing E. coli tolerance towards oxidative stress via engineering its global regulator cAMP receptor protein (CRP).

    Science.gov (United States)

    Basak, Souvik; Jiang, Rongrong

    2012-01-01

    Oxidative damage to microbial hosts often occurs under stressful conditions during bioprocessing. Classical strain engineering approaches are usually both time-consuming and labor intensive. Here, we aim to improve E. coli performance under oxidative stress via engineering its global regulator cAMP receptor protein (CRP), which can directly or indirectly regulate redox-sensing regulators SoxR and OxyR, and other ~400 genes in E. coli. Error-prone PCR technique was employed to introduce modifications to CRP, and three mutants (OM1~OM3) were identified with improved tolerance via H(2)O(2) enrichment selection. The best mutant OM3 could grow in 12 mM H(2)O(2) with the growth rate of 0.6 h(-1), whereas the growth of wild type was completely inhibited at this H(2)O(2) concentration. OM3 also elicited enhanced thermotolerance at 48°C as well as resistance against cumene hydroperoxide. The investigation about intracellular reactive oxygen species (ROS), which determines cell viability, indicated that the accumulation of ROS in OM3 was always lower than in WT with or without H(2)O(2) treatment. Genome-wide DNA microarray analysis has shown not only CRP-regulated genes have demonstrated great transcriptional level changes (up to 8.9-fold), but also RpoS- and OxyR-regulated genes (up to 7.7-fold). qRT-PCR data and enzyme activity assay suggested that catalase (katE) could be a major antioxidant enzyme in OM3 instead of alkyl hydroperoxide reductase or superoxide dismutase. To our knowledge, this is the first work on improving E. coli oxidative stress resistance by reframing its transcription machinery through its native global regulator. The positive outcome of this approach may suggest that engineering CRP can be successfully implemented as an efficient strain engineering alternative for E. coli.

  9. Effect of the Antisense BcMF12 Driven by the BcA9 Promoter on Gene Silencing in Brassica campestris L. ssp. chinensis

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    The study analyzed the silencing of BcMF12 gene regulated by BcA9 promoter in the transgenic pakchoi and confirmed the effect of antisense BcMF12 gene on the pollen development. A conserved BcMF12 gene fragment was amplified from the cDNA of flower buds in pakchoi (Brassica campestris L. ssp. chinensis, syn. B. rapa L. ssp. chinensis) and was fused to the anther specific BcA9 promoter. The plant antisense expression vector was constructed and then introduced into pakchoi via Agrobacterium-mediated transformation. The transgenic plants were screened by antibiotics and molecular analysis. PCR and Southern blot revealed that the antisense BcMF12-GUS fusion gene regulated by BcA9 promoter was integrated into transgenic plants. Northern blot suggested that the expression of BcMF12 gene was down-regulated significantly. The pollen germination rate of transgenic plants with antisense BcMF12 gene decreased as compared with that of the control plants. The expression of the gene BcMF12 related to the pollen development was inhibited by the antisense BcMF12 driven by BcA9 promoter, which consequently affected the pollen development in pakchoi.

  10. 78 FR 38055 - Building Research Capacity in Global Tobacco Product Regulation Program (U18)

    Science.gov (United States)

    2013-06-25

    ... authority to regulate the manufacture, distribution, marketing, and sale of tobacco products in the United... and CTP's mission by utilizing WHO Member States' expertise and extensive international contacts in...)); section 102 of the Tobacco Control Act)). Establishing product standards to regulate the contents,...

  11. The LysR-type transcription factor PacR is a global regulator of photosynthetic carbon assimilation in Anabaena.

    Science.gov (United States)

    Picossi, Silvia; Flores, Enrique; Herrero, Antonia

    2015-09-01

    Cyanobacteria perform water-splitting photosynthesis and are important primary producers impacting the carbon and nitrogen cycles at global scale. They fix CO2 through ribulose-bisphosphate carboxylase/oxygenase (RuBisCo) and have evolved a distinct CO2 concentrating mechanism (CCM) that builds high CO2 concentrations in the vicinity of RuBisCo favouring its carboxylase activity. Filamentous cyanobacteria such as Anabaena fix CO2 in photosynthetic vegetative cells, which donate photosynthate to heterocysts that rely on a heterotrophic metabolism to fix N2 . CCM elements are induced in response to inorganic carbon limitation, a cue that exposes the photosynthetic apparatus to photodamage by over-reduction. An Anabaena mutant lacking the LysR-type transcription factor All3953 grew poorly and dies under high light. The rbcL operon encoding RuBisCo was induced upon carbon limitation in the wild type but not in the mutant. ChIP-Seq analysis was used to globally identify All3953 targets under carbon limitation. Targets include, besides rbcL, genes encoding CCM elements, photorespiratory pathway- photosystem- and electron transport-related components, and factors, including flavodiiron proteins, with a demonstrated or putative function in photoprotection. Quantitative reverse transcription polymerase chain reaction analysis of selected All3953 targets showed regulation in the wild type but not in the mutant. All3953 (PacR) is a global regulator of carbon assimilation in an oxygenic photoautotroph.

  12. Limpeza clonal de mudas de videira infectadas por Xanthomonas campestris pv. viticola Clonal cleaning of grapevine plants infected by Xanthomonas campestris pv. viticola

    Directory of Open Access Journals (Sweden)

    Adriano Márcio Freire Silva

    2013-03-01

    Full Text Available O cancro bacteriano da videira é causado por Xanthomonas campestris pv. viticola (Xcv. Visando à limpeza clonal de mudas de 'Red Globe', foram estudados: tamanho ideal de ápices e gemas axilares para cultivo em meio de Galzy modificado (MGM; efeito da termoterapia (38ºC/30 dias; e ação de antibióticos na eliminação de Xcv em videiras infectadas. Os percentuais de contaminação por Xcv e de regeneração foram analisados, e as plantas obtidas foram indexadas em meio ágar nutritivo-dextrose-extrato de levedura-ampicilina (NYDAM, seguindo-se teste de patogenicidade. O cultivo de explantes com 3 mm possibilitou a obtenção de plantas livres da bactéria, com regeneração 14,3 vezes maior que explantes com 1 mm. A termoterapia de mudas infectadas, associada ao cultivo in vitro, não eliminou o patógeno. O cultivo de explantes com 10 mm, durante 40 dias em MGM + cefotaxima (300 mg L-1, proporcionou limpeza clonal das mudas. A indexação de plantas de videira regeneradas in vitro, quanto à infecção por Xcv utilizando NYDAM, seguida de teste de patogenicidade, é uma alternativa econômica e eficiente para produção de mudas de alta qualidade fitossanitária.Bacterial canker is caused by Xanthomonas campestris pv. viticola (Xcv. In order to eliminate Xcv from 'Red Globe' plants it was studied: optimal size of meristem tips and axillary buds for cultivation in modified Galzy's medium (MGM; effects of thermotherapy (38ºC/30 days; and action of antibiotics in the elimination of Xcv in infected grapevines. The percentages of contamination by Xcv and regeneration were analyzed and plants obtained were indexed using the semi-selective culture medium nutrient agar-dextrose-yeast extract-ampicilin (NYDAM followed by a pathogenicity test. The cultivation of 3 mm explants permitted to obtain plants free of bacteria with regeneration 14.3 times higher than 1 mm explants. The thermotherapy of infected plants associated to the in vitro culture

  13. Global self-esteem, goal achievement orientations, and self-determined behavioural regulations in a physical education setting.

    Science.gov (United States)

    Hein, Vello; Hagger, Martin S

    2007-01-15

    We examined a theoretical model of global self-esteem that incorporated constructs from achievement goal and self-determination theories. The model hypothesized that self-determined or autonomous motives would mediate the influence of achievement goal orientation on global self-esteem. The adapted version of the Behavioural Regulation in Exercise Questionnaire (Mullan et al., 1997), the Perception of Success Questionnaire (Roberts & Balague, 1991), and Rosenberg's (1965) self-esteem scales were administered to 634 high school students aged 11 - 15 years. A structural equation model supported the hypotheses and demonstrated that autonomous motives mediated the effect of goal orientations on global self-esteem. The results suggest that generalized motivational orientations influence self-esteem by affecting autonomous motivation and is consistent with theory that suggests that experiences relating to intrinsic motivation are the mechanism by which global motivational orientations are translated into adaptive outcomes like self-esteem. The findings suggest that physical activity interventions that target autonomous motives in physical activity contexts are likely to enhance young people's general self-esteem.

  14. Semi-global robust output regulation of minimum-phase nonlinear systems based on high-gain nonlinear internal model

    Science.gov (United States)

    Wei, Xile; Lu, Meili; Wang, Jiang; Tsang, K. M.; Deng, Bin; Che, Yanqiu

    2010-05-01

    We consider the assumption of existence of the general nonlinear internal model that is introduced in the design of robust output regulators for a class of minimum-phase nonlinear systems with rth degree (r ≥ 2). The robust output regulation problem can be converted into a robust stabilisation problem of an augmented system consisting of the given plant and a high-gain nonlinear internal model, perfectly reproducing the bounded including not only periodic but also nonperiodic exogenous signal from a nonlinear system, which satisfies some general immersion assumption. The state feedback controller is designed to guarantee the asymptotic convergence of system errors to zero manifold. Furthermore, the proposed scheme makes use of output feedback dynamic controller that only processes information from the regulated output error by using high-gain observer to robustly estimate the derivatives of the regulated output error. The stabilisation analysis of the resulting closed-loop systems leads to regional as well as semi-global robust output regulation achieved for some appointed initial condition in the state space, for all possible values of the uncertain parameter vector and the exogenous signal, ranging over an arbitrary compact set.

  15. Role of Staphylococcus aureus global regulators sae and sigmaB in virulence gene expression during device-related infection.

    Science.gov (United States)

    Goerke, Christiane; Fluckiger, Ursula; Steinhuber, Andrea; Bisanzio, Vittoria; Ulrich, Martina; Bischoff, Markus; Patti, Joseph M; Wolz, Christiane

    2005-06-01

    The ability of Staphylococcus aureus to adapt to different environments is due to a regulatory network comprising several loci. Here we present a detailed study of the interaction between the two global regulators sae and sigmaB of S. aureus and their influence on virulence gene expression in vitro, as well as during device-related infection. The expression of sae, asp23, hla, clfA, coa, and fnbA was determined in strain Newman and its isogenic saeS/R and sigB mutants by Northern analysis and LightCycler reverse transcription-PCR. There was no indication of direct cross talk between the two regulators. sae had a dominant effect on target gene expression during device-related infection. SigmaB seemed to be less active throughout the infection than under induced conditions in vitro.

  16. Regulation of global genome nucleotide excision repair by SIRT1 through xeroderma pigmentosum C

    Science.gov (United States)

    Ming, Mei; Shea, Christopher R.; Guo, Xiumei; Li, Xiaoling; Soltani, Keyoumars; Han, Weinong; He, Yu-Ying

    2010-01-01

    Disruption of the nucleotide excision repair (NER) pathway by mutations can cause xeroderma pigmentosum, a syndrome predisposing affected individuals to development of skin cancer. The xeroderma pigmentosum C (XPC) protein is essential for initiating global genome NER by recognizing the DNA lesion and recruiting downstream factors. Here we show that inhibition of the deacetylase and longevity factor SIRT1 impairs global genome NER through suppressing the transcription of XPC in a SIRT1 deacetylase-dependent manner. SIRT1 enhances XPC expression by reducing AKT-dependent nuclear localization of the transcription repressor of XPC. Finally, we show that SIRT1 levels are significantly reduced in human skin tumors from Caucasian patients, a population at highest risk. These findings suggest that SIRT1 acts as a tumor suppressor through its role in DNA repair. PMID:21149730

  17. The global regulator LaeA controls penicillin biosynthesis, pigmentation and sporulation, but not roquefortine C synthesis in Penicillium chrysogenum.

    Science.gov (United States)

    Kosalková, Katarina; García-Estrada, Carlos; Ullán, Ricardo V; Godio, Ramiro P; Feltrer, Raúl; Teijeira, Fernando; Mauriz, Elba; Martín, Juan Francisco

    2009-02-01

    The biosynthesis of the beta-lactam antibiotic penicillin is an excellent model for the study of secondary metabolites produced by filamentous fungi due to the good background knowledge on the biochemistry and molecular genetics of the beta-lactam producing microorganisms. The three genes (pcbAB, pcbC, penDE) encoding enzymes of the penicillin pathway in Penicillium chrysogenum are clustered, but no penicillin pathway-specific regulators have been found in the genome region that contains the penicillin gene cluster. The biosynthesis of this beta-lactam is controlled by global regulators of secondary metabolism rather than by a pathway-specific regulator. In this work we have identified the gene encoding the secondary metabolism global regulator LaeA in P. chrysogenum (PcLaeA), a nuclear protein with a methyltransferase domain. The PclaeA gene is present as a single copy in the genome of low and high-penicillin producing strains and is not located in the 56.8-kb amplified region occurring in high-penicillin producing strains. Overexpression of the PclaeA gene gave rise to a 25% increase in penicillin production. PclaeA knock-down mutants exhibited drastically reduced levels of penicillin gene expression and antibiotic production and showed pigmentation and sporulation defects, but the levels of roquefortine C produced and the expression of the dmaW involved in roquefortine biosynthesis remained similar to those observed in the wild-type parental strain. The lack of effect on the synthesis of roquefortine is probably related to the chromatin arrangement in the low expression roquefortine promoters as compared to the bidirectional pbcAB-pcbC promoter region involved in penicillin biosynthesis. These results evidence that PcLaeA not only controls some secondary metabolism gene clusters, but also asexual differentiation in P. chrysogenum.

  18. Promoter Analysis Reveals Globally Differential Regulation of Human Long Non-Coding RNA and Protein-Coding Genes

    KAUST Repository

    Alam, Tanvir

    2014-10-02

    Transcriptional regulation of protein-coding genes is increasingly well-understood on a global scale, yet no comparable information exists for long non-coding RNA (lncRNA) genes, which were recently recognized to be as numerous as protein-coding genes in mammalian genomes. We performed a genome-wide comparative analysis of the promoters of human lncRNA and protein-coding genes, finding global differences in specific genetic and epigenetic features relevant to transcriptional regulation. These two groups of genes are hence subject to separate transcriptional regulatory programs, including distinct transcription factor (TF) proteins that significantly favor lncRNA, rather than coding-gene, promoters. We report a specific signature of promoter-proximal transcriptional regulation of lncRNA genes, including several distinct transcription factor binding sites (TFBS). Experimental DNase I hypersensitive site profiles are consistent with active configurations of these lncRNA TFBS sets in diverse human cell types. TFBS ChIP-seq datasets confirm the binding events that we predicted using computational approaches for a subset of factors. For several TFs known to be directly regulated by lncRNAs, we find that their putative TFBSs are enriched at lncRNA promoters, suggesting that the TFs and the lncRNAs may participate in a bidirectional feedback loop regulatory network. Accordingly, cells may be able to modulate lncRNA expression levels independently of mRNA levels via distinct regulatory pathways. Our results also raise the possibility that, given the historical reliance on protein-coding gene catalogs to define the chromatin states of active promoters, a revision of these chromatin signature profiles to incorporate expressed lncRNA genes is warranted in the future.

  19. Effects of global crisis on structural policies and financial regulations: the comparison of OECD economies

    Directory of Open Access Journals (Sweden)

    Yusuf Karaaslan

    2009-12-01

    Full Text Available Global crisis that has affected all economies has also given harms for financial and structural bodies of economies. Near after this financial crisis, governments took different responsibilities to overcome this phenomenon. In this context, priorities in overcoming the crisis have concentrated on the macroeconomic adjustments and regulatory precautions. Measures should have taken by the governments of OECD economies in line of macroeconomic adjustment and crisis exit strategies are outlined briefly.

  20. Structure of global buyer-supplier networks and its implications for conflict minerals regulations

    CERN Document Server

    Mizuno, Takayuki; Watanabe, Tsutomu

    2015-01-01

    We investigate the structure of global inter-firm linkages using a dataset that contains information on business partners for about 400,000 firms worldwide, including all the firms listed on the major stock exchanges. Among the firms, we examine three networks, which are based on customer-supplier, licensee-licensor, and strategic alliance relationships. First, we show that these networks all have scale-free topology and that the degree distribution for each follows a power law with an exponent of 1.5. The shortest path length is around six for all three networks. Second, we show through community structure analysis that the firms comprise a community with those firms that belong to the same industry but different home countries, indicating the globalization of firms' production activities. Finally, we discuss what such production globalization implies for the proliferation of conflict minerals (i.e., minerals extracted from conflict zones and sold to firms in other countries to perpetuate fighting) through g...

  1. Salmonella SirA is a global regulator of genes mediating enteropathogenesis.

    Science.gov (United States)

    Ahmer, B M; van Reeuwijk, J; Watson, P R; Wallis, T S; Heffron, F

    1999-02-01

    SirA of Salmonella typhimurium is known to regulate the hilA and prgH genes within Salmonella pathogenicity island 1 (SPI1). To identify more members of the SirA regulon, we screened 10,000 random lacZY fusions (chromosomal MudJ insertions) for regulation by SirA and identified 10 positively regulated fusions. Three fusions were within the SPI1 genes hilA (an SPI1 transcriptional regulator), spaS (a component of the SPI1 type III export apparatus) and sipB (a substrate of the SPI1 export apparatus). Two fusions were within the sopB gene (also known as sigD). sopB is located within SPI5, but encodes a protein that is exported via the SPI1 export apparatus. In addition, five fusions were within genes of unknown function that are located in SPI4. As spaS and sipB were likely to be hilA dependent, we tested all of the fusions (except hilA) for hilA dependence. Surprisingly, we found that all of the fusions require hilA for expression and that plasmid-encoded SirA cannot bypass this requirement. Therefore, SirA regulates hilA, the product of which regulates genes within SPI1, SPI4 and SPI5. Both sirA and hilA mutants are dramatically attenuated in a bovine model of gastroenteritis, but have little or no effect in the mouse model of typhoid fever. This study establishes the SirA/HilA regulatory cascade as the primary regulon controlling enteropathogenic virulence functions in S. typhimurium. Because S. typhimurium causes gastroenteritis in both cattle and humans, we believe that this information may be directly applicable to the human disease.

  2. Regulation of fatty acid biosynthesis by the global regulator CcpA and the local regulator FabT in Streptococcus mutans

    OpenAIRE

    Faustoferri, R.C.; Hubbard, C.J.; Santiago, B.; Buckley, A.A.; Seifert, T.B.; Quivey, R.G.

    2014-01-01

    SMU.1745c, encoding a putative transcriptional regulator of the MarR family, maps to a location proximal to the fab gene cluster in Streptococcus mutans. Deletion of the SMU.1745c (fabTSm) coding region resulted in a membrane fatty acid composition comprised of longer-chained, unsaturated fatty acids (UFA), compared with the parent strain. Previous reports have indicated a role for FabT in regulation of genes in the fab gene cluster in other organisms, through binding to a palindromic DNA seq...

  3. Global Health Security Demands a Strong International Health Regulations Treaty and Leadership From a Highly Resourced World Health Organization.

    Science.gov (United States)

    Burkle, Frederick M

    2015-10-01

    If the Ebola tragedy of West Africa has taught us anything, it should be that the 2005 International Health Regulations (IHR) Treaty, which gave unprecedented authority to the World Health Organization (WHO) to provide global public health security during public health emergencies of international concern, has fallen severely short of its original goal. After encouraging successes with the 2003 severe acute respiratory syndrome (SARS) pandemic, the intent of the legally binding Treaty to improve the capacity of all countries to detect, assess, notify, and respond to public health threats has shamefully lapsed. Despite the granting of 2-year extensions in 2012 to countries to meet core surveillance and response requirements, less than 20% of countries have complied. Today it is not realistic to expect that these gaps will be solved or narrowed in the foreseeable future by the IHR or the WHO alone under current provisions. The unfortunate failures that culminated in an inadequate response to the Ebola epidemic in West Africa are multifactorial, including funding, staffing, and poor leadership decisions, but all are reversible. A rush by the Global Health Security Agenda partners to fill critical gaps in administrative and operational areas has been crucial in the short term, but questions remain as to the real priorities of the G20 as time elapses and critical gaps in public health protections and infrastructure take precedence over the economic and security needs of the developed world. The response from the Global Outbreak Alert and Response Network and foreign medical teams to Ebola proved indispensable to global health security, but both deserve stronger strategic capacity support and institutional status under the WHO leadership granted by the IHR Treaty. Treaties are the most successful means the world has in preventing, preparing for, and controlling epidemics in an increasingly globalized world. Other options are not sustainable. Given the gravity of ongoing

  4. Sapfluxnet: a global database of sap flow measurements to unravel the ecological factors of transpiration regulation in woody plants

    Science.gov (United States)

    Poyatos, Rafael; Martínez-Vilalta, Jordi; Molowny-Horas, Roberto; Steppe, Kathy; Oren, Ram; Katul, Gabriel; Mahecha, Miguel

    2016-04-01

    Plant transpiration is one of the main components of the global water cycle, it controls land energy balance, determines catchment hydrological responses and exerts strong feedbacks on regional and global climate. At the same time, plant productivity, growth and survival are severely constrained by water availability, which is expected to decline in many areas of the world because of global-change driven increases in drought conditions. While global surveys of drought tolerance traits at the organ level are rapidly increasing our knowledge of the diversity in plant functional strategies to cope with drought stress, a whole-plant perspective of drought vulnerability is still lacking. Sap flow measurements using thermal methods have now been applied to measure seasonal patterns in water use and the response of transpiration to environmental drivers across hundreds of species of woody plants worldwide, covering a wide range of climates, soils and stand structural characteristics. Here, we present the first effort to build a global database of sub-daily, tree-level sap flow (SAPFLUXNET) that will be used to improve our understanding of physiological and structural determinants of plant transpiration and to further investigate the role of vegetation in controlling global water balance. We already have the expression of interest of data contributors representing >115 globally distributed sites, > 185 species and > 700 trees, measured over at least one growing season. However, the potential number of available sites and species is probably much higher given that > 2500 sap flow-related papers have been identified in a Scopus literature search conducted in November 2015. We will give an overview of how data collection, harmonisation and quality control procedures are implemented within the project. We will also discuss potential analytical strategies to synthesize hydroclimatic controls on sap flow into biologically meaningful traits related to whole-plant transpiration

  5. Identification of Heat Tolerance Linked Molecular Markers of Chinese Cabbage (Brassica campestris L.ssp. pekinensis)

    Institute of Scientific and Technical Information of China (English)

    ZHENG Xiao-ying; WANG Yong-jian; SONG Shun-hua; LI Li; YU Shuan-cang

    2002-01-01

    Genetically stable population of recombination inbred line (RIL) was derived from a cross between a heat tolerant line 177 and a heat sensitive line 276 of Chinese cabbage (Brassica campestris L. ssp.pekinensis ) by single seed descent. The RILs were analyzed using isozyme, RAPD and AFLP techniques in order to find molecular markers that are linked to heat tolerance quantitative trait loci (QTL). The results of variance analysis of single factor indicated that there were 9 molecular markers closely linked with heat tolerance QTL, including 5 AFLP markers, 3 RAPD markers and 1 PGM isozyme marker. Total genetic contribution of these makers to heat tolerance was 46.7%. Five of the nine markers distributed in one linkage group,the remaining 4 markers were located in separate groups. Thus the 9 heat tolerance linked markers distributed in 5 independent locations in the genome of Chinese cabbage.

  6. Genetic linkage map of Brassica campestris L.using AFLP and RAPD markers

    Institute of Scientific and Technical Information of China (English)

    卢钢; 陈杭; 等

    2002-01-01

    A genetic linkage map comprised of 131 loci was constructed with an F2 population derived from an inter-subspecific cross between Brassica campestris L.ssp.chinensis cv.aijiaohang” and ssp.rapifera cv.,”'isihai”.The genetic map included 93 RAPD loci,36 AFLP loci and 2 morphological loci organized into 10 main linkage groups(LGs) and 2 small groups,covering 1810.9cM with average distance between adjacent markers being approximately 13.8cM.The map is suitable for identification of molecular markers linked to important agronomic traits.QTL analysis,and even for marker-assisted selection in breeding programs of Chinese cabbage and turnip.

  7. Morphological characterization of local landraces of rapeseed (Brassica campestris L. var toria of Nepal

    Directory of Open Access Journals (Sweden)

    Salik Ram Gupta

    2015-12-01

    Full Text Available Rapeseed (Brassica campestris L. var toria is the main source of edible oil for Nepalese people. 54 rapeseed lines were collected from different hilly district of Nepal ranging from 987 m to 2550 m altitude. These lines were planted in augmented design for its traits characterization in Khumaltar 2013. Different traits of local rapeseed were characterized, and evaluated. NGRC 02778 performed better followed by SR-02 than local checks Morang-2, Chitwan Local and Unnati in terms of yield, days to maturity and pest infestation. Similarly, genotype SR-18 was late and SR-16 was earlier in terms of days to maturity. In conclusion, SR-02 was found better genotype based on different characteristics measured among all local rapeseeds planted in Khumaltar 2013. Thus SR-2 can be used as parents in crossing material for further breeding purposes and it can also be tested in further trial.

  8. Caracterização de isolados de Xanthomonas campestris pv campestris de sistemas de produção orgânico e reação de brássicas à podridão-negra Characterization of strains of Xanthomonas campestris pv campestris from organic farming systems and reaction of brassicas to black rot

    Directory of Open Access Journals (Sweden)

    Liliana Andréa dos Santos

    2008-12-01

    Full Text Available Noventa isolados de Xanthomonas campestris pv. campestris (Xcc de brássicas oriundas de sistemas de produção orgânico das Zonas da Mata e Agreste de Pernambuco foram caracterizados com base na sensibilidade a antibióticos e sulfato de cobre e atividade de esterase. A maioria apresentou alta sensibilidade à tetraciclina (76,6%, eritromicina (63,3% e estreptomicina (63,3%, resistência à amoxicilina (70%, gentamicina (40,0% e norfloxacin (45,5% e média sensibilidade (44,4% ou resistência (44,4% à neomicina. Cinqüenta e cinco isolados de Xcc foram resistentes ao sulfato de cobre na concentração de 50 mg/mL e todos foram sensíveis ao produto na concentração de 200 mg/mL. Atividade de esterase foi apresentada por 92,22% dos isolados. A análise Euclidiana por ligação simples evidenciou variabilidade entre os isolados separando-os em sete grupos de similaridade. Foi estudada também a reação de 14 cultivares de brássicas à podridão-negra, utilizando o isolado "B21" de Xcc. As cultivares diferiram significativamente entre si em relação ao período de incubação, incidência e severidade final da doença. Os maiores valores de severidade final da doença foram verificados em brócolos "Ramoso", couve-flor "Bola de Neve" e "Piracicaba de Verão", e repolho "Chato de Quintal". Os híbridos de couve-chinesa "AF 70", "AF 72", "AF 69" e "AF 66" mostraram-se altamente resistentes à doença, enquanto que brócolos "Ramoso" e "Precoce Piracicaba", couve-flor "Piracicaba de Verão" e "Híbrido Cindy" e repolho "60 Dias" foram medianamente resistentes.Ninety strains of Xanthomonas campestris pv. campestris (Xcc from brassicas grown under organic farming systems in the "Mata" and "Agreste" regions of Pernambuco, Brazil, were characterized based upon sensitivity to antibiotics and copper sulfate, and esterase activity. Most of the strains showed high sensitivity to tetracycline (76.6%, erythromycin (63.3% and streptomycin (63

  9. Soxhlet-assisted matrix solid phase dispersion to extract flavonoids from rape (Brassica campestris) bee pollen.

    Science.gov (United States)

    Ma, Shuangqin; Tu, Xijuan; Dong, Jiangtao; Long, Peng; Yang, Wenchao; Miao, Xiaoqing; Chen, Wenbin; Wu, Zhenhong

    2015-11-15

    Soxhlet-assisted matrix solid phase dispersion (SA-MSPD) method was developed to extract flavonoids from rape (Brassica campestris) bee pollen. Extraction parameters including the extraction solvent, the extraction time, and the solid support conditions were investigated and optimized. The best extraction yields were obtained using ethanol as the extraction solvent, silica gel as the solid support with 1:2 samples to solid support ratio, and the extraction time of one hour. Comparing with the conventional solvent extraction and Soxhlet method, our results show that SA-MSPD method is a more effective technique with clean-up ability. In the test of six different samples of rape bee pollen, the extracted content of flavonoids was close to 10mg/g. The present work provided a simple and effective method for extracting flavonoids from rape bee pollen, and it could be applied in the studies of other kinds of bee pollen.

  10. Estrategias para diferenciar xanthomonas campestris pv. phaseoli con sales inorgánicas

    Directory of Open Access Journals (Sweden)

    Mildred Zapata

    2001-01-01

    Full Text Available Colonias de Xanthomonas campestris pv. phaseoli (Xcp aisladas de hojas de habichuelas con síntomas de tizón común en Puerto Rico, República Dominicana y Costa Rica fueron caracterizadas como patogénicas en hojas de Phaseolus vulgaris. Sin embargo, éstas fueron clasificadas en los patovares phaseoli, vesicatoria, carotae y xanthosoma por el sistema Biolog. Las cepas de Xcp crecidas en 2, 3, 5-Trifenil cloruro de tetrazolio (TTC mostraron colonias convexas, brillosas, lisas y de color rojo en diferentes tamaños. TTC fue reducido por las cepas de Xcp a un pigmento rojo intenso, un formazán de trifenilo. No se encontraron diferencias en virulencia y tipos de colonias en las cepas identificadas por pruebas de patogenicidad como Xcp. Por otro lado, hubo diferencias en el tipo de colonia en cultivos bacterianos identificados como: Pseudomonas cissicola, P. fulva, Corynebacterium, Rhodococcus, y Shingomonas

  11. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation

    NARCIS (Netherlands)

    Alvarez-Dominguez, Juan R; Hu, Wenqian; Yuan, Bingbing; Shi, Jiahai; Park, Staphany S; Gromatzky, Austin A; van Oudenaarden, Alexander; Lodish, Harvey F

    2014-01-01

    Erythropoiesis is regulated at multiple levels to ensure the proper generation of mature red cells under multiple physiological conditions. To probe the contribution of long noncoding RNAs (lncRNAs) to this process, we examined >1 billion RNA-seq reads of polyadenylated and nonpolyadenylated RNA fro

  12. Global SUMO proteome responses guide gene regulation, mRNA biogenesis, and plant stress responses.

    NARCIS (Netherlands)

    M.J. Mazur; H.A. van den Burg

    2012-01-01

    Small Ubiquitin-like MOdifier (SUMO) is a key regulator of abiotic stress, disease resistance, and development in plants. The identification of >350 plant SUMO targets has revealed many processes modulated by SUMO and potential consequences of SUMO on its targets. Importantly, highly related protein

  13. The Growth of Private Regulation of Labor Standards in Global Supply Chains

    DEFF Research Database (Denmark)

    Knudsen, Jette Steen

    2013-01-01

    on the Business for Social Compliance Initiative (BSCI), this article examines the positions of private actors, who demand and supply private regulation as well as the positions of those firms, who are the targets of such schemes. As the BSCI has grown its membership, MNCs increasingly request that SMEs meet BSCI...

  14. EU risk regulation and its Global Standards: the case of Pharmaceuticals

    NARCIS (Netherlands)

    Wirtz, Sabrina

    2014-01-01

    The European Union in its risk regulation activities is increasingly relying on standards set by international entities. Using the example of standards for pharmaceutical products set by the International Conference for Harmonisation (ICH), this paper points out problems of transparency, participati

  15. Regulators of global genome repair do not respond to DNA damaging therapy but correlate with survival in melanoma.

    Directory of Open Access Journals (Sweden)

    Nikola A Bowden

    Full Text Available Nucleotide excision repair (NER orchestrates the repair of helix distorting DNA damage, induced by both ultraviolet radiation (UVR and cisplatin. There is evidence that the global genome repair (GGR arm of NER is dysfunctional in melanoma and it is known to have limited induction in melanoma cell lines after cisplatin treatment. The aims of this study were to examine mRNA transcript levels of regulators of GGR and to investigate the downstream effect on global transcript expression in melanoma cell lines after cisplatin treatment and in melanoma tumours. The GGR regulators, BRCA1 and PCNA, were induced in melanocytes after cisplatin, but not in melanoma cell lines. Transcripts associated with BRCA1, BRCA2, ATM and CHEK2 showed altered expression in melanoma cell lines after cisplatin treatment. In melanoma tumour tissue BRCA1 transcript expression correlated with poor survival and XPB expression correlated with solar elastosis levels. Taken together, these findings provide evidence of the mechanisms underlying NER deficiency in melanoma.

  16. Global harmonization of food safety regulation from the perspective of Korea and a novel fast automatic product recall system.

    Science.gov (United States)

    Sohn, Mun-Gi; Oh, Sangsuk

    2014-08-01

    Efforts have been made for global harmonization of food safety regulations among countries through international organizations such as WTO and WHO/FAO. Global harmonization of food safety regulations is becoming increasingly important for Korean consumers because more than half of food and agricultural products are imported and consumed. Through recent reorganization of the Korean government, a consolidated national food safety authority-the Ministry of Food and Drug Safety (MFDS)-has been established for more efficient food safety control and better communication with consumers. The Automatic Sales Blocking System (ASBS), which blocks the sales of the recalled food products at the point of sale, has been implemented at over 40,000 retail food stores around the nation using state-of-the art information and communication technology (ICT) for faster recall of adulterated food products, and the e-Food Safety Control System has been developed for more efficient monitoring of national food safety surveillance situations. The National Food Safety Information Service was also established for monitoring and collecting food safety information and incidents worldwide, and shares relevant information with all stakeholders. The new approaches adopted by the Korean Food Safety Authority are expected to enhance public trust with regard to food safety issues and expedite the recall process of adulterated products from the market.

  17. Human Behavior Regulation in Global Warming%全球变暖的人类行为调控

    Institute of Scientific and Technical Information of China (English)

    王丰年

    2012-01-01

    全球变暖是各国关注的问题,并且全球变暖没有减缓趋势。导致全球变暖有诸如全球正处于温暖期、地球自身的状态变化等自然因素,但是,主要是人为因素诸如焚烧化石矿物、植被的减少、建筑物的增加加剧全球变暖;需要从技术合作、气候变化的国际行动、转变经济发展方式等角度,调控人类的生产和生活行为方式。%Global warming is a national concern, and the global warming trend has not slowed down. Natural factors such as the Earth's periodic revolution trajectory changes, Earth cyclical revolution trajectory changes that cause global warming, but human factors such as the burning of fossil, the reduction of forest and farmland, buildings that contribute to climate warming; from technical cooperation international action on cli- mate change, the transformation of economic development point of view, the regulation of human production and life behavior.

  18. Produção e caracterização de anticorpos policlonais contra Xanthomonas campestris pv. viticola Production and characterization of polyclonal antibodies against Xanthomonas campestris pv. viticola

    Directory of Open Access Journals (Sweden)

    João Sebastião de Paula Araujo

    2005-03-01

    Full Text Available O objetivo deste trabalho foi a produção de anticorpos policlonais contra Xanthomonas campestris pv. viticola e sua caracterização pelo método Elisa indireto. Os resultados apontaram a qualidade dos anticorpos policlonais produzidos, os quais mostraram-se altamente reativos e específicos para o patovar com potencial para ser empregado no diagnóstico da doença e em programas de certificação.The objective of this work was to produce polyclonal antibodies against Xanthomonas campestris pv. viticola and characterize these antibodies through Elisa serological indirect method. Results indicate that polyclonal antibodies produced were highly reactive against bacterial cells, showing specificity at the pathovar level and potential to be used for diagnosis and certification purposes.

  19. Metabolic flux pattern of glucose utilization by Xanthomonas campestris pv. campestris: prevalent role of the Entner-Doudoroff pathway and minor fluxes through the pentose phosphate pathway and glycolysis.

    Science.gov (United States)

    Schatschneider, Sarah; Huber, Claudia; Neuweger, Heiko; Watt, Tony Francis; Pühler, Alfred; Eisenreich, Wolfgang; Wittmann, Christoph; Niehaus, Karsten; Vorhölter, Frank-Jörg

    2014-10-01

    The well-studied plant pathogenic bacterium Xanthomonas campestris pv. campestris (Xcc) synthesizes the biotechnologically important polysaccharide xanthan gum, which is also regarded as a virulence factor in plant interactions. In Xcc, sugars like glucose are utilized as a source to generate energy and biomass for growth and pathogenicity. In this study, we used [1-(13)C]glucose as a tracer to analyze the fluxes in the central metabolism of the bacterium growing in a minimal medium. (13)C-Metabolic flux analysis based on gas chromatography-mass spectrometry (GC-MS) confirmed the prevalent catabolic role of the Entner-Doudoroff pathway. Comparative nuclear magnetic resonance (NMR)-based isotopologue profiling of a mutant deficient in glycolysis gave evidence for a moderate flux via glycolysis in the wild-type. In addition to reconfirming the Entner-Doudoroff pathway as a catabolic main route, this approach affirmed a numerically minor but important flux via the pentose phosphate pathway.

  20. Systems Chronobiology: Global Analysis of Gene Regulation in a 24-Hour Periodic World.

    Science.gov (United States)

    Mermet, Jérôme; Yeung, Jake; Naef, Felix

    2017-03-01

    Mammals have evolved an internal timing system, the circadian clock, which synchronizes physiology and behavior to the daily light and dark cycles of the Earth. The master clock, located in the suprachiasmatic nucleus (SCN) of the brain, takes fluctuating light input from the retina and synchronizes other tissues to the same internal rhythm. The molecular clocks that drive these circadian rhythms are ticking in nearly all cells in the body. Efforts in systems chronobiology are now being directed at understanding, on a comprehensive scale, how the circadian clock controls different layers of gene regulation to provide robust timing cues at the cellular and tissue level. In this review, we introduce some basic concepts underlying periodicity of gene regulation, and then highlight recent genome-wide investigations on the propagation of rhythms across multiple regulatory layers in mammals, all the way from chromatin conformation to protein accumulation.

  1. Global identification of target genes regulated by APETALA3 and PISTILLATA floral homeotic gene action.

    Science.gov (United States)

    Zik, Moriyah; Irish, Vivian F

    2003-01-01

    Identifying the genes regulated by the floral homeotic genes APETALA3 (AP3) and PISTILLATA (PI) is crucial for understanding the molecular mechanisms that lead to petal and stamen formation. We have used microarray analysis to conduct a broad survey of genes whose expression is affected by AP3 and PI activity. DNA microarrays consisting of 9216 Arabidopsis ESTs were screened with probes corresponding to mRNAs from different mutant and transgenic lines that misexpress AP3 and/or PI. The microarray results were further confirmed by RNA gel blot analyses. Our results suggest that AP3 and PI regulate a relatively small number of genes, implying that many genes used in petal and stamen development are not tissue specific and likely have roles in other processes as well. We recovered genes similar to previously identified petal- and stamen-expressed genes as well as genes that were not implicated previously in petal and stamen development. A very low percentage of the genes recovered encoded transcription factors. This finding suggests that AP3 and PI act relatively directly to regulate the genes required for the basic cellular processes responsible for petal and stamen morphogenesis.

  2. A global transcriptional regulator in Thermococcus kodakaraensis controls the expression levels of both glycolytic and gluconeogenic enzyme-encoding genes.

    Science.gov (United States)

    Kanai, Tamotsu; Akerboom, Jasper; Takedomi, Shogo; van de Werken, Harmen J G; Blombach, Fabian; van der Oost, John; Murakami, Taira; Atomi, Haruyuki; Imanaka, Tadayuki

    2007-11-16

    We identified a novel regulator, Thermococcales glycolytic regulator (Tgr), functioning as both an activator and a repressor of transcription in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1. Tgr (TK1769) displays similarity (28% identical) to Pyrococcus furiosus TrmB (PF1743), a transcriptional repressor regulating the trehalose/maltose ATP-binding cassette transporter genes, but is more closely related (67%) to a TrmB paralog in P. furiosus (PF0124). Growth of a tgr disruption strain (Deltatgr) displayed a significant decrease in growth rate under gluconeogenic conditions compared with the wild-type strain, whereas comparable growth rates were observed under glycolytic conditions. A whole genome microarray analysis revealed that transcript levels of almost all genes related to glycolysis and maltodextrin metabolism were at relatively high levels in the Deltatgr mutant even under gluconeogenic conditions. The Deltatgr mutant also displayed defects in the transcriptional activation of gluconeogenic genes under these conditions, indicating that Tgr functions as both an activator and a repressor. Genes regulated by Tgr contain a previously identified sequence motif, the Thermococcales glycolytic motif (TGM). The TGM was positioned upstream of the Transcription factor B-responsive element (BRE)/TATA sequence in gluconeogenic promoters and downstream of it in glycolytic promoters. Electrophoretic mobility shift assay indicated that recombinant Tgr protein specifically binds to promoter regions containing a TGM. Tgr was released from the DNA when maltotriose was added, suggesting that this sugar is most likely the physiological effector. Our results strongly suggest that Tgr is a global transcriptional regulator that simultaneously controls, in response to sugar availability, both glycolytic and gluconeogenic metabolism in T. kodakaraensis via its direct binding to the TGM.

  3. A study on the essential oil of Ferulago campestris: how much does extraction method influence the oil composition?

    Science.gov (United States)

    Riela, Serena; Bruno, Maurizio; Rosselli, Sergio; Saladino, Maria L; Caponetti, Eugenio; Formisano, Carmen; Senatore, Felice

    2011-02-01

    The essential oil of different parts of Ferulago campestris (Bess.) collected in Sicily has been extracted by microwave-assisted hydrodistillation (MAHD) and by classic hydrodistillation (HD). A comparative qualitative-quantitative study on the composition of the oils was carried out. A total of 100 compounds were identified in the oils obtained by MAHD, whereas 88 compounds characterized the HD oils. The most prominent components were, in all different parts of F. campestris and in both extraction methods, 2,4,5-trimethylbenzaldehyde and 2,4,6-trimethylbenzaldehyde isomers; the latter was not previously found. The attempt to evaluate where the oil components are located in all parts of the plant was carried out by means of a kinetic study. Then, electron microscopy observation on the different parts before and after MAHD and HD was performed.

  4. CytR Is a Global Positive Regulator of Competence, Type VI Secretion, and Chitinases in Vibrio cholerae.

    Science.gov (United States)

    Watve, Samit S; Thomas, Jacob; Hammer, Brian K

    2015-01-01

    The facultative pathogen Vibrio cholerae transitions between its human host and aquatic reservoirs where it colonizes chitinous surfaces. Growth on chitin induces expression of chitin utilization genes, genes involved in DNA uptake by natural transformation, and a type VI secretion system that allows contact-dependent killing of neighboring bacteria. We have previously shown that the transcription factor CytR, thought to primarily regulate the pyrimidine nucleoside scavenging response, is required for natural competence in V. cholerae. Through high-throughput RNA sequencing (RNA-seq), we show that CytR positively regulates the majority of competence genes, the three type VI secretion operons, and the four known or predicted chitinases. We used transcriptional reporters and phenotypic analysis to determine the individual contributions of quorum sensing, which is controlled by the transcription factors HapR and QstR; chitin utilization that is mediated by TfoX; and pyrimidine starvation that is orchestrated by CytR, toward each of these processes. We find that in V. cholerae, CytR is a global regulator of multiple behaviors affecting fitness and adaptability in the environment.

  5. The contribution of Utility-Scale Solar Energy to the global climate regulation and its effects on local ecosystem services

    Directory of Open Access Journals (Sweden)

    Antonella De Marco

    2014-12-01

    Full Text Available One solution to mitigate climate change can be the production of renewable energy. In this context, the aims of this paper are: (1 the identification of local unsuitable areas for the installation of Utility-Scale Solar Energy (USSE in a municipality in southern Italy; (2 the assessment of the effects of their installation on local natural CO2 sequestration and on avoided CO2; and (3 the evaluation of their contribution to the global climate regulation through scenario analysis. Since 2007, 82 authorizations have been obtained for the installation of USSE in the municipality and 42 over 64 already completed have been installed in unsuitable areas. For what concerns the remaining USSE, two short-term scenarios are analysed in order to take into account their contribution in terms of climate regulation service. The first scenario is called Business As Usual with new planned USSE installed by 2014 also in unsuitable areas, and the second one with the new USSE installed only in suitable areas identified in this study. Surprisingly, Scenario 2 is characterized by a reduced natural capacity to sequester CO2 emissions and by a lower contribution of vegetation in providing the ecosystem service climate regulation in comparison with Scenario 1.

  6. CytR Is a Global Positive Regulator of Competence, Type VI Secretion, and Chitinases in Vibrio cholerae.

    Directory of Open Access Journals (Sweden)

    Samit S Watve

    Full Text Available The facultative pathogen Vibrio cholerae transitions between its human host and aquatic reservoirs where it colonizes chitinous surfaces. Growth on chitin induces expression of chitin utilization genes, genes involved in DNA uptake by natural transformation, and a type VI secretion system that allows contact-dependent killing of neighboring bacteria. We have previously shown that the transcription factor CytR, thought to primarily regulate the pyrimidine nucleoside scavenging response, is required for natural competence in V. cholerae. Through high-throughput RNA sequencing (RNA-seq, we show that CytR positively regulates the majority of competence genes, the three type VI secretion operons, and the four known or predicted chitinases. We used transcriptional reporters and phenotypic analysis to determine the individual contributions of quorum sensing, which is controlled by the transcription factors HapR and QstR; chitin utilization that is mediated by TfoX; and pyrimidine starvation that is orchestrated by CytR, toward each of these processes. We find that in V. cholerae, CytR is a global regulator of multiple behaviors affecting fitness and adaptability in the environment.

  7. Crosstalk of Escherichia coli FadR with global regulators in expression of fatty acid transport genes.

    Directory of Open Access Journals (Sweden)

    Youjun Feng

    Full Text Available Escherichia coli FadR plays two regulatory roles in fatty acid metabolism. FadR represses the fatty acid degradation (fad system and activates the unsaturated fatty acid synthetic pathway. Cross-talk between E. coli FadR and the ArcA-ArcB oxygen-responsive two-component system was observed that resulted in diverse regulation of certain fad regulon β-oxidation genes. We have extended such analyses to the fadL and fadD genes, the protein products of which are required for long chain fatty acid transport and have also studied the role of a third global regulator, the CRP-cAMP complex. The promoters of both the fadL and fadD genes contain two experimentally validated FadR-binding sites plus binding sites for ArcA and CRP-cAMP. Despite the presence of dual binding sites FadR only modestly regulates expression of these genes, indicating that the number of binding sites does not determine regulatory strength. We report complementary in vitro and in vivo studies indicating that the CRP-cAMP complex directly activates expression of fadL and fadD as well as the β-oxidation gene, fadH. The physiological relevance of the fadL and fadD transcription data was validated by direct assays of long chain fatty acid transport.

  8. Robust scheme of global parallel force/position regulators for robot manipulators under environment uncertainty

    Institute of Scientific and Technical Information of China (English)

    Chunqing HUANG; Lisang LIU; Xinggui WANG; Songjiao SHI

    2007-01-01

    A simple robust scheme of parallel force/position control is proposed in this paper to deal with two problems for non-planar constraint surface and nonlinear mechanical feature of environment: i) uncertainties in environment that are usually not available or difficult to be determined in most practical situations; ii) stability problem or/and integrator windup due to the integration of force error in the force dominance rule in parallel force/position control. It shows that this robust scheme is a good alternative for anti-windup. In the presence of environment uncertainties, global asymptotic stability of the resulting closed-loop system is guaranteed; it also shows robustness of the proposed controller to uncertain environment with complex characteristics. Finally, numerical simulation verifies results via contact task of a two rigid-links robot manipulator.

  9. Global Regulation of Embryonic Patterning in Arabidopsis by MicroRNAs1[W][OPEN

    Science.gov (United States)

    Seefried, William F.; Willmann, Matthew R.; Clausen, Rachel L.; Jenik, Pablo D.

    2014-01-01

    The development of the embryo in Arabidopsis (Arabidopsis thaliana) involves a carefully controlled set of cell divisions and cell fate decisions that lead to a mature embryo containing shoot and root meristems and all basic tissue types. Over the last 20 years, a number of transcriptional regulators of embryonic patterning have been described, but little is known about the role of posttranscriptional regulators such as microRNAs (miRNAs). Previous work has centered on the study of null or very weak alleles of miRNA biosynthetic genes, but these mutants either arrest early in embryogenesis or have wild-type-looking embryos. Here, we significantly extend those analyses by characterizing embryos mutant for a strong hypomorphic allele of DICER-LIKE1 (dcl1-15). Our data demonstrate that miRNAs are required for the patterning of most regions of the embryo, with the exception of the protoderm. In mutant embryos with the most severe morphological defects, the majority of tissue identities are lost. Different levels of miRNAs appear to be required to specify cell fates in various regions of the embryo. The suspensor needs the lowest levels, followed by the root apical meristem and hypocotyl, cotyledons, and shoot apical meristem. Furthermore, we show that erecta acts as a suppressor of dcl1-15, a novel role for this signaling pathway in embryos. Our results also indicate that the regulation of the messenger RNA levels of miRNA targets involves not just the action of miRNAs but has a significant transcriptional component as well. PMID:24784759

  10. Global regulation of gene expression in response to cysteine availability in Clostridium perfringens

    Directory of Open Access Journals (Sweden)

    André Gaelle

    2010-09-01

    Full Text Available Abstract Background Cysteine has a crucial role in cellular physiology and its synthesis is tightly controlled due to its reactivity. However, little is known about the sulfur metabolism and its regulation in clostridia compared with other firmicutes. In Clostridium perfringens, the two-component system, VirR/VirS, controls the expression of the ubiG operon involved in methionine to cysteine conversion in addition to the expression of several toxin genes. The existence of links between the C. perfringens virulence regulon and sulfur metabolism prompted us to analyze this metabolism in more detail. Results We first performed a tentative reconstruction of sulfur metabolism in C. perfringens and correlated these data with the growth of strain 13 in the presence of various sulfur sources. Surprisingly, C. perfringens can convert cysteine to methionine by an atypical still uncharacterized pathway. We further compared the expression profiles of strain 13 after growth in the presence of cystine or homocysteine that corresponds to conditions of cysteine depletion. Among the 177 genes differentially expressed, we found genes involved in sulfur metabolism and controlled by premature termination of transcription via a cysteine specific T-box system (cysK-cysE, cysP1 and cysP2 or an S-box riboswitch (metK and metT. We also showed that the ubiG operon was submitted to a triple regulation by cysteine availability via a T-box system, by the VirR/VirS system via the VR-RNA and by the VirX regulatory RNA. In addition, we found that expression of pfoA (theta-toxin, nagL (one of the five genes encoding hyaluronidases and genes involved in the maintenance of cell redox status was differentially expressed in response to cysteine availability. Finally, we showed that the expression of genes involved in [Fe-S] clusters biogenesis and of the ldh gene encoding the lactate dehydrogenase was induced during cysteine limitation. Conclusion Several key functions for the

  11. Global identification of genes regulated by estrogen signaling and demethylation in MCF-7 breast cancer cells

    Energy Technology Data Exchange (ETDEWEB)

    Putnik, Milica, E-mail: milica.putnik@ki.se [Department of Biosciences and Nutrition, Novum, Karolinska Institutet, Huddinge S-14183 (Sweden); Zhao, Chunyan, E-mail: chunyan.zhao@ki.se [Department of Biosciences and Nutrition, Novum, Karolinska Institutet, Huddinge S-14183 (Sweden); Gustafsson, Jan-Ake, E-mail: jan-ake.gustafsson@ki.se [Department of Biosciences and Nutrition, Novum, Karolinska Institutet, Huddinge S-14183 (Sweden); Department of Biology and Biochemistry, Science and Engineering Research Center Bldg, University of Houston, Houston, TX 77204-5056 (United States); Dahlman-Wright, Karin, E-mail: karin.dahlman-wright@ki.se [Department of Biosciences and Nutrition, Novum, Karolinska Institutet, Huddinge S-14183 (Sweden)

    2012-09-14

    Highlights: Black-Right-Pointing-Pointer Estrogen signaling and demethylation can both control gene expression in breast cancers. Black-Right-Pointing-Pointer Cross-talk between these mechanisms is investigated in human MCF-7 breast cancer cells. Black-Right-Pointing-Pointer 137 genes are influenced by both 17{beta}-estradiol and demethylating agent 5-aza-2 Prime -deoxycytidine. Black-Right-Pointing-Pointer A set of genes is identified as targets of both estrogen signaling and demethylation. Black-Right-Pointing-Pointer There is no direct molecular interplay of mediators of estrogen and epigenetic signaling. -- Abstract: Estrogen signaling and epigenetic modifications, in particular DNA methylation, are involved in regulation of gene expression in breast cancers. Here we investigated a potential regulatory cross-talk between these two pathways by identifying their common target genes and exploring underlying molecular mechanisms in human MCF-7 breast cancer cells. Gene expression profiling revealed that the expression of approximately 140 genes was influenced by both 17{beta}-estradiol (E2) and a demethylating agent 5-aza-2 Prime -deoxycytidine (DAC). Gene ontology (GO) analysis suggests that these genes are involved in intracellular signaling cascades, regulation of cell proliferation and apoptosis. Based on previously reported association with breast cancer, estrogen signaling and/or DNA methylation, CpG island prediction and GO analysis, we selected six genes (BTG3, FHL2, PMAIP1, BTG2, CDKN1A and TGFB2) for further analysis. Tamoxifen reverses the effect of E2 on the expression of all selected genes, suggesting that they are direct targets of estrogen receptor. Furthermore, DAC treatment reactivates the expression of all selected genes in a dose-dependent manner. Promoter CpG island methylation status analysis revealed that only the promoters of BTG3 and FHL2 genes are methylated, with DAC inducing demethylation, suggesting DNA methylation directs repression of

  12. Produção e caracterização de anticorpos policlonais contra Xanthomonas campestris pv. viticola.

    OpenAIRE

    2005-01-01

    O objetivo deste trabalho foi a produção de anticorpos policlonais contra Xanthomonas campestris pv. viticola e sua caracterização pelo método Elisa indireto. Os resultados apontaram a qualidade dos anticorpos policlonais produzidos, os quais mostraram-se altamente reativos e específicos para o patovar com potencial para ser empregado no diagnóstico da doença e em programas de certificação.

  13. Decreased Pollen Viability and Thicken Pollen Intine in Antisense Silenced Brassica campestris Mutant of BcMF19

    Institute of Scientific and Technical Information of China (English)

    LIU Jin-long; GAO Ming-hui; LIU Ying; CAO Jia-shu

    2014-01-01

    Brassica campestris male fertility 19 (BcMF19;GenBank accession number GQ902048.1), a gene that is specially expressed in tapetum cells and microspores during anther development in B. campestris ssp. chinensis, which is learned from the previous in situ hybridization study. In the present study, we constructed antisense-silenced plants of BcMF19 using B. campestris ssp. chinensis to validate this prediction. The morphology of the pistils, long anthers, and short anthers was signiifcantly affected in 35sbcmf19 compared with the control samples. 4´-6-Diamidino-2-phenylindole staining revealed that two generative nuclei and one large vegetative nucleus were not affected in the mutant compared with control. Statistical analysis of Alexander’s staining results showed that 96% of the control pollen grains had vitality, whereas only 86% of the mutant pollen grains did. Under scanning electron microscopy, the mutant demonstrated numerous abnormal pollen grains and resembled dried persimmon. The frequency of normal pollen grains was approximately 18%. Under transmission electron microscopy, the pollen intine during the binucleate and mature pollen stages in 35sbcmf19 exhibited abnormal thickening, especially at the germinal furrows, compared with control. In vitro pollen germination test showed that the tips of the mutant pollen tubes transformed into globular alveoli and stopped growing compared with control. On the other hand, in vivo pollen germination test suggested that BcMF19 affected the pollen tube extension in the pistil. These ifndings indicate that BcMF19 is essential to the pollen development and pollen tube extension of B. campestris ssp. chinensis.

  14. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation.

    Science.gov (United States)

    Alvarez-Dominguez, Juan R; Hu, Wenqian; Yuan, Bingbing; Shi, Jiahai; Park, Staphany S; Gromatzky, Austin A; van Oudenaarden, Alexander; Lodish, Harvey F

    2014-01-23

    Erythropoiesis is regulated at multiple levels to ensure the proper generation of mature red cells under multiple physiological conditions. To probe the contribution of long noncoding RNAs (lncRNAs) to this process, we examined >1 billion RNA-seq reads of polyadenylated and nonpolyadenylated RNA from differentiating mouse fetal liver red blood cells and identified 655 lncRNA genes including not only intergenic, antisense, and intronic but also pseudogene and enhancer loci. More than 100 of these genes are previously unrecognized and highly erythroid specific. By integrating genome-wide surveys of chromatin states, transcription factor occupancy, and tissue expression patterns, we identify multiple lncRNAs that are dynamically expressed during erythropoiesis, show epigenetic regulation, and are targeted by key erythroid transcription factors GATA1, TAL1, or KLF1. We focus on 12 such candidates and find that they are nuclear-localized and exhibit complex developmental expression patterns. Depleting them severely impaired erythrocyte maturation, inhibiting cell size reduction and subsequent enucleation. One of them, alncRNA-EC7, is transcribed from an enhancer and is specifically needed for activation of the neighboring gene encoding BAND 3. Our study provides an annotated catalog of erythroid lncRNAs, readily available through an online resource, and shows that diverse types of lncRNAs participate in the regulatory circuitry underlying erythropoiesis.

  15. Expression of the alaE gene is positively regulated by the global regulator Lrp in response to intracellular accumulation of l-alanine in Escherichia coli.

    Science.gov (United States)

    Ihara, Kohei; Sato, Kazuki; Hori, Hatsuhiro; Makino, Yumiko; Shigenobu, Shuji; Ando, Tasuke; Isogai, Emiko; Yoneyama, Hiroshi

    2017-04-01

    The alaE gene in Escherichia coli encodes an l-alanine exporter that catalyzes the active export of l-alanine using proton electrochemical potential. In our previous study, alaE expression was shown to increase in the presence of l-alanyl-l-alanine (Ala-Ala). In this study, the global regulator leucine-responsive regulatory protein (Lrp) was identified as an activator of the alaE gene. A promoter less β-galactosidase gene was fused to an alaE upstream region (240 nucleotides). Cells that were lacZ-deficient and harbored this reporter plasmid showed significant induction of β-galactosidase activity (approximately 17-fold) in the presence of 6 mM l-alanine, l-leucine, and Ala-Ala. However, a reporter plasmid possessing a smaller alaE upstream region (180 nucleotides) yielded transformants with strikingly low enzyme activity under the same conditions. In contrast, lrp-deficient cells showed almost no β-galactosidase induction, indicating that Lrp positively regulates alaE expression. We next performed an electrophoretic mobility shift assay (EMSA) and a DNase I footprinting assay using purified hexahistidine-tagged Lrp (Lrp-His). Consequently, we found that Lrp-His binds to the alaE upstream region spanning nucleotide -161 to -83 with a physiologically relevant affinity (apparent KD, 288.7 ± 83.8 nM). Furthermore, the binding affinity of Lrp-His toward its cis-element was increased by l-alanine and l-leucine, but not by Ala-Ala and d-alanine. Based on these results, we concluded that the gene expression of the alaE is regulated by Lrp in response to intracellular levels of l-alanine, which eventually leads to intracellular homeostasis of l-alanine concentrations.

  16. Characterization of a putative pollen-specific arabinogalactan protein gene, BcMF8, from Brassica campestris ssp. chinensis.

    Science.gov (United States)

    Huang, Li; Cao, Jia-Shu; Zhang, Ai-Hong; Ye, Yi-Qun

    2008-12-01

    The BcMF8 (Brassica campestris male fertility 8) gene, possessing the features of 'classical' arabinogalactan protein (AGP) was isolated from Brassica campestris L. ssp. chinensis, Makino syn. B. rapa L. ssp. chinensis. This gene was highly abundant in the fertile flower buds but silenced in the sterile ones of genic male sterile A/B line ('ZUBajh97-01A/B') in B. campestris. Expression patterns analysis suggested BcMF8 was a pollen-specific gene, whose transcript started to be expressed at the uninucleate stage and maintained throughout to the pollen at pollination stage. BcMF8 is highly homologous to the known pollen-specific AGP genes Sta 39-4 and Sta 39-3 from B. napus. Isolation and multiple alignment of the homologs of BcMF8 gene in the family Cruciferae indicated that BcMF8 was highly conserved in this family, which reflect the conservation in biological function and importance of this putative AGP gene in plant development. Similarity analysis also demonstrated Sta 39-4 and Sta 39-3 may originate from different genomes.

  17. Improving ethanol tolerance of Escherichia coli by rewiring its global regulator cAMP receptor protein (CRP.

    Directory of Open Access Journals (Sweden)

    Huiqing Chong

    Full Text Available A major challenge in bioethanol fermentation is the low tolerance of the microbial host towards the end product bioethanol. Here we report to improve the ethanol tolerance of E. coli from the transcriptional level by engineering its global transcription factor cAMP receptor protein (CRP, which is known to regulate over 400 genes in E. coli. Three ethanol tolerant CRP mutants (E1- E3 were identified from error-prone PCR libraries. The best ethanol-tolerant strain E2 (M59T had the growth rate of 0.08 h(-1 in 62 g/L ethanol, higher than that of the control at 0.06 h(-1. The M59T mutation was then integrated into the genome to create variant iE2. When exposed to 150 g/l ethanol, the survival of iE2 after 15 min was about 12%, while that of BW25113 was <0.01%. Quantitative real-time reverse transcription PCR analysis (RT-PCR on 444 CRP-regulated genes using OpenArray® technology revealed that 203 genes were differentially expressed in iE2 in the absence of ethanol, whereas 92 displayed differential expression when facing ethanol stress. These genes belong to various functional groups, including central intermediary metabolism (aceE, acnA, sdhD, sucA, iron ion transport (entH, entD, fecA, fecB, and general stress response (osmY, rpoS. Six up-regulated and twelve down-regulated common genes were found in both iE2 and E2 under ethanol stress, whereas over one hundred common genes showed differential expression in the absence of ethanol. Based on the RT-PCR results, entA, marA or bhsA was knocked out in iE2 and the resulting strains became more sensitive towards ethanol.

  18. Mammalian Sir2 homolog SIRT3 regulates global mitochondrial lysine acetylation

    DEFF Research Database (Denmark)

    Lombard, David B; Alt, Frederick W; Cheng, Hwei-Ling;

    2007-01-01

    Homologs of the Saccharomyces cerevisiae Sir2 protein, sirtuins, promote longevity in many organisms. Studies of the sirtuin SIRT3 have so far been limited to cell culture systems. Here, we investigate the localization and function of SIRT3 in vivo. We show that endogenous mouse SIRT3 is a soluble...... mitochondrial protein. To address the function and relevance of SIRT3 in the regulation of energy metabolism, we generated and phenotypically characterized SIRT3 knockout mice. SIRT3-deficient animals exhibit striking mitochondrial protein hyperacetylation, suggesting that SIRT3 is a major mitochondrial...... deacetylase. In contrast, no mitochondrial hyperacetylation was detectable in mice lacking the two other mitochondrial sirtuins, SIRT4 and SIRT5. Surprisingly, despite this biochemical phenotype, SIRT3-deficient mice are metabolically unremarkable under basal conditions and show normal adaptive thermogenesis...

  19. Molecular regulation of tst superantigen expression by global regulatory systems in Staphylococcus aureus

    OpenAIRE

    Andrey, Diego Olivier

    2011-01-01

    Staphylocoque doré est un dangereux pathogène, capable de diverses formes d’infections, dont le Toxic Shock Syndrome. Ce travail étudie la régulation génique de tst, codant TSST-1, la toxine du Toxic Shock, au niveau moléculaire. Bien que situé sur un élément génétique mobile, les résultats montrent que tst est finement régulée et de manière complexe par les voies de régulation endogènes suivantes : SarA (S. aureus accessory regulator), le facteur de stress sigmaB, SarS, le senseur du quorum ...

  20. Phenotypic characterization of xpr, a global regulator of extracellular virulence factors in Staphylococcus aureus

    Science.gov (United States)

    Smeltzer, M. S.; Hart, M. E.; Iandolo, J. J.; Spooner, B. S. (Principal Investigator)

    1993-01-01

    We recently described a Tn551 insertion in the chromosome of Staphylococcus aureus S6C that resulted in drastically reduced expression of extracellular lipase (M. S. Smeltzer, S. R. Gill, and J. J. Iandolo, J. Bacteriol. 174:4000-4006, 1992). The insertion was localized to a chromosomal site (designated omega 1058) distinct from the lipase structural gene (geh) and the accessory gene regulator (agr), both of which were structurally intact in the lipase-negative (Lip-) mutants. In this report, we describe a phenotypic comparison between strains S6C, a hyperproducer of enterotoxin B; KSI9051, a derivative of S6C carrying the Tn551 insertion at omega 1058; ISP546, an 8325-4 strain that carries a Tn551 insertion in the agr locus; and ISP479C, the parent strain of ISP546 cured of the Tn551 delivery plasmid pI258repA36. Compared with their respective parent strains, ISP546 and KSI9051 produced greatly reduced amounts of lipase, alpha-toxin, delta-toxin, protease, and nuclease. KSI9051 also produced reduced amounts of staphylococcal enterotoxin B. Coagulase production was increased in ISP546 but not in KSI9051. Using a mouse model, we also demonstrated that ISP546 and KSI9051 were far less virulent than ISP479C and S6C. We have designated the genetic element defined by the Tn551 insertion at omega 1058 xpr to denote its role as a regulator of extracellular protein synthesis. We conclude that xpr and agr are similar and possibly interactive regulatory genes that play an important role in pathogenesis of staphylococcal disease.

  1. MgaSpn and H-NS: Two Unrelated Global Regulators with Similar DNA-Binding Properties

    Science.gov (United States)

    Solano-Collado, Virtu; Hüttener, Mário; Espinosa, Manuel; Juárez, Antonio; Bravo, Alicia

    2016-01-01

    Global regulators play an essential role in the adaptation of bacterial cells to specific niches. Bacterial pathogens thriving in the tissues and organs of their eukaryotic hosts are a well-studied example. Some of the proteins that recognize local DNA structures rather than specific nucleotide sequences act as global modulators in many bacteria, both Gram-negative and -positive. To this class of regulators belong the H-NS-like proteins, mainly identified in γ-Proteobacteria, and the MgaSpn-like proteins identified in Firmicutes. H-NS and MgaSpn from Escherichia coli and Streptococcus pneumoniae, respectively, neither have sequence similarity nor share structural domains. Nevertheless, they display common features in their interaction with DNA, namely: (i) they bind to DNA in a non-sequence-specific manner, (ii) they have a preference for intrinsically curved DNA regions, and (iii) they are able to form multimeric complexes on linear DNA. Using DNA fragments from the hemolysin operon regulatory region of the E. coli plasmid pHly152, we show in this work that MgaSpn is able to recognize particular regions on extended H-NS binding sites. Such regions are either located at or flanked by regions of potential bendability. Moreover, we show that the regulatory region of the pneumococcal P1623B promoter, which is recognized by MgaSpn, contains DNA motifs that are recognized by H-NS. These motifs are adjacent to regions of potential bendability. Our results suggest that both regulatory proteins recognize similar structural characteristics of DNA. PMID:27747214

  2. Herpes Simplex Virus 1 UL34 Protein Regulates the Global Architecture of the Endoplasmic Reticulum in Infected Cells.

    Science.gov (United States)

    Maeda, Fumio; Arii, Jun; Hirohata, Yoshitaka; Maruzuru, Yuhei; Koyanagi, Naoto; Kato, Akihisa; Kawaguchi, Yasushi

    2017-03-29

    Upon herpes simplex virus 1 (HSV-1) infection, the CD98 heavy chain (CD98hc) is redistributed around the nuclear membrane (NM), where it promotes viral de-envelopment during the nuclear egress of nucleocapsids. In this study, we attempted to identify the factor(s) involved in CD98hc accumulation and demonstrated the following: (i) the null mutation of HSV-1 UL34 caused specific dispersion throughout the cytoplasm of CD98hc and the HSV-1 de-envelopment regulators, glycoproteins B and H (gB and gH); (ii) as observed with CD98hc, gB, and gH, wild-type HSV-1 infection caused redistribution of the endoplasmic reticulum (ER) markers calnexin and ERp57 around the NM; whereas the UL34-null mutation caused cytoplasmic dispersion of these markers; (iii) the ER markers colocalized efficiently with CD98hc, gB, and gH in the presence and absence of UL34 in HSV-1-infected cells; (iv) at the ultrastructural level, wild-type HSV-1 infection caused ER compression around the NM, whereas the UL34 null mutation caused cytoplasmic dispersion of the ER; and (v) the UL34 null mutation significantly decreased the colocalization efficiency of lamin protein markers of the NM with CD98hc and gB. Collectively, these results indicate that HSV-1 infection causes redistribution of the ER around the NM, with resulting accumulation of ER-associated CD98hc, gB, and gH around the NM; and that UL34 is required for ER redistribution as well as for efficient recruitment to the NM of the ER-associated de-envelopment factors. Our study suggests that HSV-1 induces remodeling of the global ER architecture for recruitment of regulators mediating viral nuclear egress to the NM.IMPORTANCE The ER is an important cellular organelle that exists as a complex network extending throughout the cytoplasm. Although viruses often remodel the ER to facilitate viral replication, information on the effects of herpesvirus infections on ER morphological integrity is limited. Here, we showed that HSV-1 infection led to

  3. Rent Regulation in Jamaica: Socialist Past, Global reality, Inaction and the Working Class

    Directory of Open Access Journals (Sweden)

    M. Mills

    2012-04-01

    Full Text Available Empirical evidence has established the association between rent control and crises such as oil and World wars; yet the Jamaican governments have not reintroduced rent control and updated the Rent Restriction Act despite global recession, oil and food crises and increased poverty. The objectives of this work are: 1 To conduct a documentary analysis of prior research on the extent of the problem, and these will provide an understanding and a content for the current work; 2 To identify the issues/concerns of the Rent Restriction Act; 3 To assess the issues/concerns of the Rent Restriction Act, and 4 Drawing on the knowledge of Rent Restriction Act, recommend policies or measures that can be instituted to address changes in the framework in Jamaica. The current work used mixed method approach, phenomenology and survey research. Landlords indicated that they had more right than for tenants; their complaints were the non-payment of rent; were more knowledge of Rent Restriction Act than the tenants and the majority of them did not answer the question on “Have you ever had a case where the Act was referred to?” Two times more males were knowledge about the Rent Restriction Act than that of female; more males indicated that they had rights than that of females, less females’ problem was harassment than that of males; more males gave the Rent Restriction Act a good rating compared to females and 3.5 times more males believed that the Rent Restriction Act was relevant in contemporary Jamaica. The findings provide understanding of the issues, and can be used to aid policy formulation.

  4. Post-transcriptional regulation on a global scale: form and function of Csr/Rsm systems.

    Science.gov (United States)

    Romeo, Tony; Vakulskas, Christopher A; Babitzke, Paul

    2013-02-01

    Originally described as a repressor of gene expression in the stationary phase of growth, CsrA (RsmA) regulates primary and secondary metabolic pathways, biofilm formation, motility, virulence circuitry of pathogens, quorum sensing and stress response systems by binding to conserved sequences in its target mRNAs and altering their translation and/or turnover. While the binding of CsrA to RNA is understood at an atomic level, new mechanisms of gene activation and repression by this protein are still emerging. In the γ-proteobacteria, small non-coding RNAs (sRNAs) use molecular mimicry to sequester multiple CsrA dimers away from mRNA. In contrast, the FliW protein of Bacillus subtilis inhibits CsrA activity by binding to this protein, thereby establishing a checkpoint in flagellum morphogenesis. Turnover of CsrB and CsrC sRNAs in Escherichia coli requires a specificity protein of the GGDEF-EAL domain superfamily, CsrD, in addition to the housekeeping nucleases RNase E and PNPase. The Csr system of E. coli contains extensive autoregulatory circuitry, which governs the expression and activity of CsrA. Interaction of the Csr system with transcriptional regulatory networks results in a variety of complex response patterns. This minireview will highlight basic principles and new insights into the workings of these complex eubacterial regulatory systems.

  5. The Global Regulators Lrp, LeuO, and HexA Control Secondary Metabolism in Entomopathogenic Bacteria.

    Science.gov (United States)

    Engel, Yvonne; Windhorst, Carina; Lu, Xiaojun; Goodrich-Blair, Heidi; Bode, Helge B

    2017-01-01

    Photorhabdus luminescens TTO1 and Xenorhabdus nematophila HGB081 are insect pathogenic bacteria and producers of various structurally diverse bioactive natural products. In these entomopathogenic bacteria we investigated the role of the global regulators Lrp, LeuO, and HexA in the production of natural products. Lrp is a general activator of natural product biosynthesis in X. nematophila and for most compounds in TTO1. Microarray analysis confirmed these results in X. nematophila and enabled the identification of additional biosynthesis gene clusters (BGC) regulated by Lrp. Moreover, when promoters of two X. nematophila BGC were analyzed, transcriptional activation by Lrp was observed. In contrast, LeuO in X. nematophila and P. luminescens has both repressing and activating features, depending on the natural product examined. Furthermore, heterologous overexpression of leuO from X. nematophila in the closely related Xenorhabdus szentirmaii resulted in overproduction of several natural products including novel compounds. The presented findings could be of importance for establishing a tool for overproduction of secondary metabolites and subsequent identification of novel compounds.

  6. Dual-site phosphorylation of the control of virulence regulator impacts group a streptococcal global gene expression and pathogenesis.

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    Nicola Horstmann

    2014-05-01

    Full Text Available Phosphorylation relays are a major mechanism by which bacteria alter transcription in response to environmental signals, but understanding of the functional consequences of bacterial response regulator phosphorylation is limited. We sought to characterize how phosphorylation of the control of virulence regulator (CovR protein from the major human pathogen group A Streptococcus (GAS influences GAS global gene expression and pathogenesis. CovR mainly serves to repress GAS virulence factor-encoding genes and has been shown to homodimerize following phosphorylation on aspartate-53 (D53 in vitro. We discovered that CovR is phosphorylated in vivo and that such phosphorylation is partially heat-stable, suggesting additional phosphorylation at non-aspartate residues. Using mass spectroscopy along with targeted mutagenesis, we identified threonine-65 (T65 as an additional CovR phosphorylation site under control of the serine/threonine kinase (Stk. Phosphorylation on T65, as mimicked by the recombinant CovR T65E variant, abolished in vitro CovR D53 phosphorylation. Similarly, isoallelic GAS strains that were either unable to be phosphorylated at D53 (CovR-D53A or had functional constitutive phosphorylation at T65 (CovR-T65E had essentially an identical gene repression profile to each other and to a CovR-inactivated strain. However, the CovR-D53A and CovR-T65E isoallelic strains retained the ability to positively influence gene expression that was abolished in the CovR-inactivated strain. Consistent with these observations, the CovR-D53A and CovR-T65E strains were hypervirulent compared to the CovR-inactivated strain in a mouse model of invasive GAS disease. Surprisingly, an isoalleic strain unable to be phosphorylated at CovR T65 (CovR-T65A was hypervirulent compared to the wild-type strain, as auto-regulation of covR gene expression resulted in lower covR gene transcript and CovR protein levels in the CovR-T65A strain. Taken together, these data

  7. Kinetic models for xanthan gum production using Xanthomonas campestris from molasses

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    S.L. GILANI

    2011-06-01

    Full Text Available The effects of media temperature, agitation rate and molasses concentration on the yield of fermentation in xanthan gum production process were investigated. Xanthan gum was produced in batch fermentation by Xanthomonas campestris PTCC 1473 from molasses. At 32 C, 500 rpm and media with 30 g/l of total sugar, maximum production of xanthan gum (17.1 g/l was achieved. For the purity of the xanthan FTIR spectrum was obtained. The identified spectrum was compared with the commercial product. In batch culture, several kinetic models for the biochemical reactions were extensively studied. The growth kinetic parameters were evaluated by unstructured model and derived from the related equations. Based on Malthus and Logistic rate equations, the maximum specific growth rate, max, and initial cell dry weight, X0, were defined. Luedeking-Piret and Modified Luedeking-Piret models were applied for the product formation and substrate consumption rates. In batch experiments, the kinetic parameters for the growth associated (m, a and non-growth associated (n, b parameters were determined.

  8. Bioconversion from crude glycerin by Xanthomonas campestris 2103: xanthan production and characterization

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    L. V. Brandão

    2013-12-01

    Full Text Available The production and rheological properties of xanthan gum from crude glycerin fermentation, a primary by-product of the biodiesel industry with environmental and health risks, were evaluated. Batch fermentations (28 °C/250 rpm /120 h were carried out using crude glycerin, 0.01% urea and 0.1% KH2PO4, (% w/v, and compared to a sucrose control under the same operational conditions, using Xanthomonas campestris strain 2103 isolate from Brazil. Its maximal production by crude glycerin fermentation was 7.23±0.1 g·L-1 at 120 h, with an apparent viscosity of 642.57 mPa·s, (2 % w/v, 25 °C, 25 s-1, 70% and 30% higher than from sucrose fermentation, respectively. Its molecular weight varied from 28.2 to 36.2×10(6 Da. The Ostwald-de-Waele model parameters (K and n indicated a pseudoplastic behavior at all concentrations (0.5 to 2.0 %, w/v and temperatures (25-85 °C, while its consistency index indicated promising rheological properties for drilling fluid applications. Therefore, crude glycerin has potential as a cost-effective and alternative substrate for non-food grade xanthan production.

  9. Effect of alcoholic extract of guaco (Mikania glomerata on the control of dark rot (Xanthomonas campestris pv. campestris in cauliflower/ Avaliação da eficácia da tintura etanólica de guaco (Mikania glomerata no controle da podridão negra (Xanthomonas campestris pv. campestris em couve-flor

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    Kátia Regina Freitas Schwan-Estrada

    2006-06-01

    Full Text Available With the use of irrigation and new hybrids of cauliflower, it is possible to get production during all the year with hight yield. However, the crop has been affected by diseases, as the dark rot caused by X. campestris pv. campestris. The objective of this research work was to study the potential of Mikania glomerata for the control of this disease. Alcoholic extract 50 ºGL of M. glomerata was evaluated regarding to: in vitro antimicrobial activity through bacterial growth in 100, 250, 500 and 1000 mg L-1 of the alcoholic extract; induction of local or systemic resistance in 25 days old cauliflower, with spray of alcoholic extract concomitantly and three days before the inoculation with the pathogen (water and bordeau mixture were used as control; peroxidases activity in leaves of cauliflower treated and not treated, and harvested concomitantly, 24, 48 and 72 hours after spraying the alcoholic extract and also after inoculation. The alcoholic extract of M. glomerata showed inhibition of the bacterial growth in vitro at the concentrations of 250, 500 and 1000 mg L-1. The concentrations of 500 mg L-1 and 1000 mg L-1 inhibited 24% and 38% of the bacterial growth. This inhibition could be due to antibacterial compounds in the alcoholic extract. An inhibition of the disease in vivo occurred only in the leaves treated with 100 and 500 mg L-1 of alcoholic extract when applied concomitantly with the bacteria. This result was similar to bordeau mixture, indicating a control by direct antimicrobial activity. There was no systemic resistence induction for all treatments. The peroxidases induction was due to infectious pathogen process and not to the treatments with alcoholic extract. The results indicate the potential of M. glomerata alcoholic extract for the preventive control of cauliflower dark rot disease.Com a prática da irrigação e novos híbridos de couve-flor, é possível produzir durante todo o ano e com alta produtividade. Mas, a cultura tem

  10. Limpeza clonal de mudas de videira infectadas por Xanthomonas campestris pv. viticola

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    Adriano Márcio Freire Silva

    2013-03-01

    Full Text Available O cancro bacteriano da videira é causado por Xanthomonas campestris pv. viticola (Xcv. Visando à limpeza clonal de mudas de 'Red Globe', foram estudados: tamanho ideal de ápices e gemas axilares para cultivo em meio de Galzy modificado (MGM; efeito da termoterapia (38ºC/30 dias; e ação de antibióticos na eliminação de Xcv em videiras infectadas. Os percentuais de contaminação por Xcv e de regeneração foram analisados, e as plantas obtidas foram indexadas em meio ágar nutritivo-dextrose-extrato de levedura-ampicilina (NYDAM, seguindo-se teste de patogenicidade. O cultivo de explantes com 3 mm possibilitou a obtenção de plantas livres da bactéria, com regeneração 14,3 vezes maior que explantes com 1 mm. A termoterapia de mudas infectadas, associada ao cultivo in vitro, não eliminou o patógeno. O cultivo de explantes com 10 mm, durante 40 dias em MGM + cefotaxima (300 mg L-1, proporcionou limpeza clonal das mudas. A indexação de plantas de videira regeneradas in vitro, quanto à infecção por Xcv utilizando NYDAM, seguida de teste de patogenicidade, é uma alternativa econômica e eficiente para produção de mudas de alta qualidade fitossanitária.

  11. Identificação de potenciais plantas hospedeiras alternativas de Xanthomonas campestris pv. viticola

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    Morgana Mateus Santos

    2014-04-01

    Full Text Available Este estudo teve como objetivo identificar possíveis hospedeiras alternativas de Xanthomonas campestris pv. viticola (Xcv, visando a fornecer subsídios para o manejo do cancro bacteriano da videira. Vinte e seis espécies vegetais foram inoculadas artificialmente com o isolado Xcv3 e mantidas em condições de casa de vegetação, sendo avaliada a evolução sintomatológica da doença, como manchas necróticas angulares e lesões nas nervuras. O Xcv3 foi reisolado a partir de cada hospedeiro alternativo com sintomas, sendo identificado por PCR (Polymerase Chain Reaction, com iniciadores específicos. As espécies inoculadas que apresentaram os sintomas típicos da doença foram Glycine sp., Senna obtusifolia, Desmodium discolor, Amaranthus deflexus, Azadirachta indica, Solanum lycopersicum e Vigna unguiculata. As espécies da família Poaceae, Bidens pilosa, Emilia fosbergii, Praxelis pauciflora, Macroptilium lathyroides e Portulaca oleracea não apresentaram sintomas durante o período da avaliação.

  12. Roseomonas soli sp. nov., isolated from an agricultural soil cultivated with Chinese cabbage (Brassica campestris).

    Science.gov (United States)

    Kim, Dong-Uk; Ka, Jong-Ok

    2014-03-01

    A bacterial strain, designated 5N26(T), was isolated from an agricultural soil cultivated with Chinese cabbage (Brassica campestris). Cells of this strain were Gram-reaction-negative, strictly aerobic, motile, non-spore-forming rods, and catalase- and urease-negative. The major fatty acids of strain 5N26(T) were C16 : 0 (7.5 %), C18 : 1 2-OH (13.4 %) and summed feature 8 (C18:1ω6c and/or C18:1ω7c; 63.2%). The polar lipid profile contained diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, phosphatidylmonomethylethanolamine and one unidentified aminolipid. The G+C content of the genomic DNA of strain 5N26(T) was 68.3 mol%. 16S rRNA gene sequence analysis showed that strain 5N26(T) was phylogenetically related to Roseomonas lacus TH-G33(T) and Roseomonas terrae DS-48(T) (97.0 % and 96.6 % sequence similarity, respectively). The results of genotypic and phenotypic data showed that strain 5N26(T) could be distinguished from phylogenetically related species, and that this strain represented a novel species within the genus Roseomonas, for which the name Roseomonas soli sp. nov. (type strain 5N26(T) = KACC 16376(T) = NBRC 109097(T)) is proposed.

  13. Ionizing radiation mediated cytological manifestation in microsporogenesis of Brassica campestris L.(Brassicaceae

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    Girjesh KUMAR

    2012-12-01

    Full Text Available Purpose of the present work is to investigate the mutagenic effects of ionizing radiations (gamma rays on Brassica campestris L. accession no - IC363713. Homogeneous seeds of Brassica were irradiated at four doses of gamma rays i.e. 150 Gy, 300 Gy, 450 Gy and 600 Gy by the gamma-chamber type 60Co at the dose rate of 2 second/Gy. During microsporogenesis, meiotic analysis of young floral buds was carried out in irradiated as well as non-irradiated plant materials. Meiotic study clearly revealed the meiotic malfunctioning of pollen mother cells (PMCs that had shared copious count of cytological abnormalities namely unorientation, stickiness, precocious movement or fragmentation, secondary association of bivalents, asynchronous division, laggards, tripolarity and chromatin bridge. These aberrations were found to be distributed in all the phases of male meiosis. However, this impairing during meiosis has found to be collinearly associated with doses i.e. inclining tendency of abnormality percentage alongwith increasing doses were registered. Perhaps aforementioned chromosomal aberrations may be introduced by asymmetrical distribution of chromatin material in PMCs, had definitely compromised with pollen fertility, resulting the increased frequency of pollen sterility. Hence, pollen fertility registered, simultaneously, a moderate to sharp fall depending upon the intensity of doses.

  14. in silico Analyses of GGDEF Domain Proteins Functioning Differently in Xanthomonas campestris%十字花科黑腐病菌中GGDEF结构域蛋白差异的in silico分析

    Institute of Scientific and Technical Information of China (English)

    张穗生; 姜伟; 玉延华

    2011-01-01

    近年来,含有GGDEF结构域(含有甘氨酸(G) (2个),天冬氨酸(D),谷氨酸(E),苯丙氨酸(F)保守氨基酸)的蛋白受到重视,已证实含GGDEF结构域蛋白在细胞信号转导、生长和致病性等方面发挥了重要作用.十字花科黑腐菌8004菌株(Xanthomonas campestris pv.campestris str.8004,Xcc 8004)有32个基因编码含GGDEF结构域蛋白,实验证明其中部分蛋白与Xcc致病性、胞外酶产生、生物膜形成和泳动等生命活动相关.本文利用互联网提供的生物信息学资源,对Xcc 8004不同功能含GGDEF结构域蛋白进行生物信息学分析,着重分析其结构域架构.对蛋白结构域架构整体比较显示,这些蛋白的整体结构域架构具有多样性,共有结构域架构仅有PAS_4-GGDEF-EAL (分布于参与致病的蛋白中);对结构域架构局部比较显示,在参与致病性的含GGDEF结构域蛋白中,PAS_4-GGDEF和GGDEF-EAL为共有结构域架构;在参与内切葡聚糖酶产生的蛋白中,PAS_4-PAS_4、PAS_4-GGDEF和GGDEF-EAL为共有结构域架构.本研究结果将为蛋白质功能预测提供线索.%It has been reported that GGDEF domain proteins (containing five conserve amino acid residues including two glycines (G) and a aspartic acid (D), glutamic acid (E), phenylalanine (F)) play key roles in essential cell process including signal transduction, growth and virulence. There were 32 GGDEF domain proteins predicted mXanthomonas campestris pv. Campestris str. 8004 (Xcc 8004), and several of them were involved in different cell processes including virulence, extracellular enzyme production, biofilm formation and motility according to experimental evidence. In this work, we analyzed GGDEF domain proteins functioning differently in Xcc using bioinformatics web services, focusing on their domain architectures. The results revealed the proteins were almost different in their global domain architecture except PAS4-GGDEF-EAL in the proteins associated with virulence

  15. Ephrin-A3 reverse signaling regulates hippocampal neuronal damage and astrocytic glutamate transport after transient global ischemia.

    Science.gov (United States)

    Yang, Jinshan; Luo, Xiang; Huang, Xiaojiang; Ning, Qin; Xie, Minjie; Wang, Wei

    2014-11-01

    Increasing evidence indicates that the Eph receptors and their ephrin ligands are involved in the regulation of interactions between neurons and astrocytes. Moreover, astrocytic ephrin-A3 reverse signaling mediated by EphA4 receptors is necessary for controlling the abundance of glial glutamate transporters. However, the role of ephrin-A3 reverse signaling in astrocytic function and neuronal death under ischemic conditions remains unclear. In the present study, we found that the EphA4 receptor and its ephrin-A3 ligand, which were distributed in neurons and astrocytes, respectively, in the hippocampus showed a coincident up-regulation of protein expression in the early stage of ischemia. Application of clustered EphA4 decreased the expressions of astrocytic glutamate transporters together with astrocytic glutamate uptake capacity through activating ephrin-A3 reverse signaling. In consequence, neuronal loss was aggravated in the CA1 region of the hippocampus accompanied by impaired hippocampus-dependent spatial memory when clustered EphA4 treatment was administered prior to transient global ischemia. These findings indicate that EphA4-mediated ephrin-A3 reverse signaling is a crucial mechanism for astrocytes to control glial glutamate transporters and prevent glutamate excitotoxicity under pathological conditions. Astrocytic ephrin-A3 reverse signaling mediated by EphA4 receptor is necessary for controlling the abundance of glial glutamate transporters under physiological conditions. However, the role of ephrin-A3 reverse signaling in astrocytic function and neuronal death under ischemic conditions remains unclear. We found EphA4-mediated ephrin-A3 reverse signaling to be a crucial mechanism for astrocytes to control glial glutamate transporters and protect hippocampal neurons from glutamate excitotoxicity under ischemic conditions, this cascade representing a potential therapeutic target for stroke.

  16. Structure of the Branched-chain Amino Acid and GTP-sensing Global Regulator, CodY, from Bacillus subtilis*

    Science.gov (United States)

    Levdikov, Vladimir M.; Blagova, Elena; Young, Vicki L.; Belitsky, Boris R.; Lebedev, Andrey; Sonenshein, Abraham L.

    2017-01-01

    CodY is a branched-chain amino acid (BCAA) and GTP sensor and a global regulator of transcription in low G + C Gram-positive bacteria. It controls the expression of over 100 genes and operons, principally by repressing during growth genes whose products are required for adaptations to nutrient limitation. However, the mechanism by which BCAA binding regulates transcriptional changes is not clear. It is known that CodY consists of a GAF (cGMP-stimulated phosphodiesterases, adenylate cyclases, FhlA) domain that binds BCAAs and a winged helix-turn-helix (wHTH) domain that binds to DNA, but the way in which these domains interact and the structural basis of the BCAA dependence of this interaction are unknown. To gain new insights, we determined the crystal structure of unliganded CodY from Bacillus subtilis revealing a 10-turn α-helix linking otherwise discrete GAF and wHTH domains. The structure of CodY in complex with isoleucine revealed a reorganized GAF domain. In both complexes CodY was tetrameric. Size exclusion chromatography with multiangle laser light scattering (SEC-MALLS) experiments showed that CodY is a dimer at concentrations found in bacterial cells. Comparison of structures of dimers of unliganded CodY and CodY-Ile derived from the tetramers showed a splaying of the wHTH domains when Ile was bound; splaying is likely to account for the increased affinity of Ile-bound CodY for DNA. Electrophoretic mobility shift and SEC-MALLS analyses of CodY binding to 19–36-bp operator fragments are consistent with isoleucine-dependent binding of two CodY dimers per duplex. The implications of these observations for effector control of CodY activity are discussed. PMID:28011634

  17. Establishment of an in vitro system for studies on the induced resistance of cotton to Xanthomonas campestris pv. malvacearum Estabelecimento de sistema in vitro para estudos da resistência induzida à Xanthomonas campestris pv. malvacearum em algodoeiro

    Directory of Open Access Journals (Sweden)

    ADILSON KENJI KOBAYASHI

    2000-04-01

    Full Text Available An in vitro system for studying the resistance response of cotton (Gossypium hirsutum L. to Xanthomonas campestris pv. malvacearum was investigated. Cell suspension cultures, established from hypocotyl-derived callus of cotton cultivar 101-102B, were treated with bacterial extracellular polysaccharides (EPS extracted from the incompatible race 18 of X. campestris pv. malvacearum. EPS at 600 mug/mL caused pronounced darkening of the suspension cultures, as indicative of cell death, 48 hours after incubation. Protein electrophoresis analysis of the time course of EPS-treated cells showed differential accumulation of several protein bands after 12-24 hours. The time course of protein accumulation and cell death was consistent with an elicitor-mediated hypersensitive response.Desenvolveu-se um sistema in vitro para estudar a resistência do algodoeiro (Gossypium hirsutum L. à Xanthomonas campestris pv. malvacearum. Foram utilizados calos originados a partir de hipocótilos da cultivar de algodoeiro 101-102B para estabelecer culturas de células em suspensão, as quais foram tratadas com polissacarídeos extracelulares bacterianos (EPS extraídos da raça incompatível 18 de X. campestris pv. malvacearum. O tratamento com EPS, na concentração de 600 mig/mL, causou acentuado escurecimento das culturas em suspensão, indicativo de morte celular, 48 horas após a incubação. A análise temporal do perfil eletroforético de proteínas extraídas das células tratadas com EPS mostrou um acúmulo diferencial de diversas proteínas após 12-24 horas. O acúmulo de proteínas e a morte celular ao longo do período estudado foram consistentes com um padrão de resposta de hipersensibilidade causada por elicitores.

  18. Knock out deletion and functional analysis of glucose transportation system in Xanthomonas campestris pv.campestris%黄单胞菌葡萄糖转运系统相关基因的敲除及功能分析

    Institute of Scientific and Technical Information of China (English)

    马辰; 梁如冰; 刘建华

    2014-01-01

    Three glucose transporters and two membrane-bound glucose dehydrogenases were knocked out in the phy-topathogenic bacterium Xanthomonas campestris pv.campestris 8004.The five mutants and Xcc8004 had little differ-ence in their basic metabolisms , such as cell growth curve , extra-cellular polysaccharide production and cellulases activities when cultured in nutrition-rich medium.However, the deletion of sodium/glucose transporter gene (XC_2460) influenced the cell growth when glucose was used as carbon source ,but its extra-cellular glucose yield in car-boxymethyl cellulose degradation test was about 1.67-fold higher than those of other strains .These results demonstra-ted the hypothesis that the extracellular glucose concentration from cellulose could be increased significantly by block of glucose influx transport system without affecting basic cell metabolism is feasible .%分别敲除了植物病原体野油菜黄单胞菌( Xanthomonas campestris pv.campestris 8004)的3个葡萄糖转运蛋白和2个葡萄糖脱氢酶,获得了5株相应基因敲除的突变体。在营养丰富的培养基中,这5株突变体的生长曲线、胞外纤维素酶活性和胞外多糖量与野生型相比并无显著差异。在以葡萄糖为唯一碳源的M63培养基中,XC_2460基因的敲除显著影响了黄单胞菌的生长;在以CMC作为唯一碳源的M63培养基中, XC_2460基因的敲除使突变体的胞外葡萄糖累积量达到野生菌株的1.67倍。这些结果首次显示阻遏葡萄糖的跨膜转运是改进纤维素分解菌株积累葡萄糖量的有益途径。

  19. Global Analysis of Gene Expression Profiles in Brassica napus Developing Seeds Reveals a Conserved Lipid Metabolism Regulation with Arabidopsis thaliana

    Institute of Scientific and Technical Information of China (English)

    Ya Niu; Guo-Zhang Wu; Rui Ye; Wen-Hui Lin; Qiu-Ming Shi; Liang-Jiao Xue; Xiao-Dong Xu; Yao Li; Yu-Guang; Hong-Wei Xue

    2009-01-01

    In order to study Brassica napus fatty acid (FA) metabolism and relevant regulatory networks, a systematic identification of fatty acid (FA) biosynthesis-related genes was conducted. Following gene identification, gene expression profiles during B. napus seed development and FA metabolism were performed by cDNA chip hybridization (>8000 EST clones from seed). The results showed that FA biosynthesis and regulation, and carbon flux, were conserved between B. napus and Arabidopsis. However, a more critical role of starch metabolism was detected for B. napus seed FA metabolism and storage-component accumulation when compared with Arabidopsis. In addition, a crucial stage for the transition of seed-to-sink tissue was 17-21 d after flowering (DAF), whereas FA biosynthesis-related genes were highly expressed pri-marily at 21 DAF. Hormone (auxin and jasmonate) signaling is found to be important for FA metabolism. This study helps to reveal the global regulatory network of FA metabolism in developing B. napus seeds.

  20. Global regulation of reactive oxygen species scavenging genes in alfalfa root and shoot under gradual drought stress and recovery.

    Science.gov (United States)

    Kang, Yun; Udvardi, Michael

    2012-05-01

    Reactive oxygen species (ROS) production and scavenging in plants under drought stress have been studied intensively in recent years. Here we report a global analysis of gene expression for the major ROS generating and scavenging proteins in alfalfa root and shoot under gradual drought stress followed by one-day recovery. Data from two alfalfa varieties, one drought tolerant and one drought sensitive, were compared and no qualitative differences in ROS gene regulation between the two were found. Conserved, tissue-specific patterns of gene expression in response to drought were observed for several ROS-scavenging gene families, including ascorbate peroxidase, monodehydroascorbate reductase, and peroxiredoxin. In addition, differential gene expression within families was observed. Genes for the ROS-generating enzyme, NADPH oxidase were generally induced under drought, while those for glycolate oxidase were repressed. Among the ROS-scavenging protein genes, Ferritin, Cu/Zn superoxide dismutase (SOD), and the majority of the glutathione peroxidase family members were induced under drought in both roots and shoots of both alfalfa varieties. In contrast, Fe-SOD, CC-type glutaredoxins, and thoiredoxins were downregulated.

  1. The Staphylococcus aureus Global Regulator MgrA Modulates Clumping and Virulence by Controlling Surface Protein Expression.

    Directory of Open Access Journals (Sweden)

    Heidi A Crosby

    2016-05-01

    Full Text Available Staphylococcus aureus is a human commensal and opportunistic pathogen that causes devastating infections in a wide range of locations within the body. One of the defining characteristics of S. aureus is its ability to form clumps in the presence of soluble fibrinogen, which likely has a protective benefit and facilitates adhesion to host tissue. We have previously shown that the ArlRS two-component regulatory system controls clumping, in part by repressing production of the large surface protein Ebh. In this work we show that ArlRS does not directly regulate Ebh, but instead ArlRS activates expression of the global regulator MgrA. Strains lacking mgrA fail to clump in the presence of fibrinogen, and clumping can be restored to an arlRS mutant by overexpressing either arlRS or mgrA, indicating that ArlRS and MgrA constitute a regulatory pathway. We used RNA-seq to show that MgrA represses ebh, as well as seven cell wall-associated proteins (SraP, Spa, FnbB, SasG, SasC, FmtB, and SdrD. EMSA analysis showed that MgrA directly represses expression of ebh and sraP. Clumping can be restored to an mgrA mutant by deleting the genes for Ebh, SraP and SasG, suggesting that increased expression of these proteins blocks clumping by steric hindrance. We show that mgrA mutants are less virulent in a rabbit model of endocarditis, and virulence can be partially restored by deleting the genes for the surface proteins ebh, sraP, and sasG. While mgrA mutants are unable to clump, they are known to have enhanced biofilm capacity. We demonstrate that this increase in biofilm formation is partially due to up-regulation of SasG, a surface protein known to promote intercellular interactions. These results confirm that ArlRS and MgrA constitute a regulatory cascade, and that they control expression of a number of genes important for virulence, including those for eight large surface proteins.

  2. Variaciones en el contenido de los polifenoles foliares en Smilax campestris Griseb. -Smilacaceae- según su grado de desarrollo

    OpenAIRE

    Rugna, Ana Zulema; Ricco, Rafael Alejandro; Gurni, Alberto Angel; Wagner, Marcelo Luis

    2008-01-01

    Smilax campestris Griseb. -Smilacaceae - es una enredadera dioica, a la cual se le atribuyen propiedades farmacológicas, que crece en regiones cálidas y templadas de la Argentina. Los polifenoles son compuestos que están presentes en ella y que cumplen un rol importante en las interacciones bióticas y abióticas de la planta con su entorno. Se estableció como objetivo del presente trabajo determinar las variaciones de los polifenoles según el grado de desarrollo de las hojas. Se utilizaron ...

  3. Development of a New Semiselective Medium for Isolating Xanthomonas campestris pv. manihotis from Plant Material and Soil.

    Science.gov (United States)

    Fessehaie, A; Wydra, K; Rudolph, K

    1999-07-01

    ABSTRACT An effective control for bacterial blight of cassava (Manihot esculenta), caused by Xanthomonas campestris pv. manihotis, requires the use of non-contaminated cuttings and seeds. Using classical agar plating techniques for screening planting material for contamination has not been very successful because of the lack of a reliable semiselective agar medium. The pathogen grows slowly on general plating media and is easily overgrown by saprophytic bacteria during isolation from diseased plants. In an effort to develop a semiselective medium, the utilization of several carbon and nitrogen sources was studied. Results of these tests provided information used to design a basal medium allowing good growth of the target organism while suppressing growth of several common saprophytes. Additional selectivity was achieved by incorporating three antibiotics into the basal medium. The new semiselective agar medium, designated cefazolin trehalose agar (CTA) medium, contained (per liter) 3.0 g of K(2)HPO(4), 1.0 g of NaH(2)PO(4), 0.3 g of MgSO(4).7H(2)O, 1.0 g of NH(4)Cl, 9.0 g of D(+)-trehalose, 1.0 D(+)-glucose, 1.0 g of yeast extract, 0.025 g of cefazolin, 0.0012 g of lincomycin, 0.0025 g of phosphomycin, 0.25 g of cycloheximide, and 14.0 g of agar. In comparison to a starch-based semiselective medium (SXM), plating efficiencies using pure cultures of 10 strains of X. campestris pv. manihotis were significantly higher on CTA, with an average of 85 and 50%, respectively. Likewise, isolation and recovery of X. campestris pv. manihotis from infected cassava leaves and contaminated soil were much higher on CTA than on SXM agar. When X. campestris pv. manihotis occurs in high concentrations in diseased tissue, the standard yeast trehalose glucose agar medium supplemented with 250 mug of cycloheximide per ml appears to be satisfactory. The newly developed CTA medium should prove useful for control strategies to identify and remove infected planting material of cassava, as

  4. Alelopatia de Salacia campestris Walp. sobre a germinação e crescimento inicial de alface e tomate

    OpenAIRE

    F. S. Santana; R. S. P. Malheiros; M. V. Linhares Neto; T. M. B. Falcão; L. L. Machado; A. M. Mapeli

    2014-01-01

    Muitos metabólitos sintetizados pelas plantas e liberados no ambiente, afetam o desenvolvimento de outras espécies vegetais, afetando principalmente a germinação e o crescimento inicial das plântulas, fenômeno este chamado de alelopatia. Em vista disso o trabalho teve como objetivo investigar os efeitos alelopáticos do extrato etanólico do caule de Salacia campestris Walp. na germinação e crescimento inicial de alface e tomate. O extrato foi ensaiado nas concentrações 0, 250, 500 e 1000 mg/L....

  5. Salacia campestris root bark extract: peroxidase inhibition, antioxidant and antiradical profile

    Directory of Open Access Journals (Sweden)

    José Carlos Rebuglio Vellosa

    2009-03-01

    Full Text Available Reactive oxygen species (ROS and free radical species have been implicated in initiating or accompanying many diseases in living organisms; there is thus, a continual need for antioxidants molecules to inactivate ROS/free radicals. Many studies of plants crude extracts have demonstrated free-radical scavenging and antioxidant action. Salacia species have long been used, in several countries, as traditional medicines against certain diseases and for their anti-inflammatory properties. In this study, Salacia campestris Walp (Hippocrateaceae root bark ethanol extract (ScEtOH was assessed for its ability to scavenge free radicals and reactive oxygen species; the results were expressed as percentage inhibition of the active species. ScEtOH was efficient against studied species: DPPH radical (obtained inhibition = 30%, ABTS•+ (IC50 = 1.8±0.8 μg/mL, HOCl (IC50 = 1.7 ± 0.1 μg/mL, O2•- (obtained inhibition = 32%, and NO• (obtained inhibition = 18 %. Peroxidase activity inhibition was evaluated through the guaiacol oxidation reaction catalyzed by hemin, HRP and myeloperoxidase (MPO; data showed that ScEtOH at 10 μg/mL led to 54 and 51% of inhibition, respectively, for the hemin and HRP systems. In the MPO system, ScEtOH promoted a 50% inhibition at 8.9 μg/mL, whereas quercetin, a powerful MPO inhibitor, inhibited this system at 1.35 μg/mL.Espécies reativas do oxigênio (ERO e radicais livres estão relacionados ao início ou à exacerbação de muitas doenças em organismos vivos; existindo portanto uma necessidade contínua por moléculas antioxidantes que inativem as ERO e radicais livres. Muitos estudos com extratos brutos de plantas têm demonstrado propriedades antioxidantes e seqüestradoras de radicais livres. Espécies de Salacia são utilizadas, em muitos países, como remédio tradicional contra certas doenças e por suas propriedades antiinflamatórias. Neste estudo, o extrato bruto etanólico da casca da raiz da Salacia

  6. Genotipos de frijol (Phaseolus Vulgaris l. resistentes a Xanthomonas campestris pv. phaseoli de Mexico

    Directory of Open Access Journals (Sweden)

    Rosa Navarrete

    2000-01-01

    Full Text Available Genotipos de frijol (Phaseolus vulgaris L. resistentes a Xanthomonas campestris pv. phaseoli de México. Durante 1995 se evaluó la reacción de genotipos de frijol de diversos origenes a Xcp, bajo condiciones de invernadero en el Campo Experimental del Valle de México, del INIFAP. Se realizaron tres experimentos con a120, b44 y csiete genotipos de frijol. Las plantas se inocularon por corte con navajas en la etapa V3, a y b con una mezcla de nueve cepas de Xcp y el c, con cada una de siete cepas con diferente grado de patogenicidad. La severidad se evaluó 20 días después de la inoculación, por comparación con una escala visual de nueve grados. Los datos se analizaron bajo un diseño completamente al azar. En a, los genotipos que mostraron reacción de resistencia a Xcp fueron: A 36, A 475, G 5686, G 11867, Harowood, SEA 14, XAN 266, MCD 4012 y REN 27. En b los genotipos resistentes fueron: Sequía Durango, Taylor y XAN 30. En los experimentos anteriores la severidad de la enfermedad mostró una distribución normal, con el máximo número de genotipos en el grado de severidad cinco en a y seis en b. Los resultados obtenidos indican que el uso de mezclas de cepas de bacterias con diferente patogenicidad es eficiente para identificar genotipos de frijol resistentes a Xcp. Los genotipos resistentes identificados en el último experimento, mostraron respuesta diferencial e interacciones genotipo por cepa. REN 27 y SEA 14 mostraron resistencia a las cepas utilizadas

  7. Immunohistochemical evidence of seasonal changes of gonadotropes in male ruin lizard (Podarcis sicula campestris De Betta

    Directory of Open Access Journals (Sweden)

    G De Metrio

    2009-12-01

    Full Text Available The pars distalis from the pituitary gland of adult male ruin lizards (Podarcis sicula campestris De Betta, captured during the five periods of the annual sexual cycle (emergence from hibernation, reproductive period, summer regression, autumnal recrudescence, winter arrest, was studied immunohistochemically using specific antibodies against hFSHb, hLHb, oFSHb, and oLHb with the avidinbiotin complex (ABC procedure to monitor the seasonal changes in shape, size and percentage area taken up from gonadotropes. FSH containing cells were specifically identified with anti-hFSHb and anti-oFSHb sera, whereas the LH cells were localized by anti-hLHb. The anti-oLHb serum showed cross-reactivity with the cells immunostained by the three above antisera (anti-hFSHb, anti-oFSHb, and anti-hLHb. None of the cells containing both gonadotropic hormones as shown by the doubleimmunostaining procedure. Generally, FSH cells were larger and more numerous than LH cells. FSH cells were elongated or pyriform in shape from spring to autumn, whereas they were round or oval during the winter stasis and until the emergence from hibernation. The size and the percentage area occupied by FSH cells showed an annual pattern with two distinct peaks in the reproductive and in the autumnal recrudescence periods. LH cells did not show seasonal changes in shape, being round or oval throughout the reproductive cycle, whereas their size and the area they occupied underwent seasonal variations. The LH cells reached the largest size during the reproductive period and the smallest size during the summer regression. The percentage area occupied by LH cells in the pars distalis peaked at the emergence from hibernation and during the summer refractory period, when FSH cells displayed their lowest values.

  8. Sobrevivência de Xanthomonas campestris pv. viticola em tecido infectado de videira

    Directory of Open Access Journals (Sweden)

    Adriano Márcio Freire Silva

    2012-09-01

    Full Text Available Tecidos de plantas infectados constituem uma importante fonte de inóculo primário para fitobacterioses. O objetivo deste trabalho foi investigar a sobrevivência de Xanthomonas campestris pv. viticola (Xcv, agente do cancro bacteriano da videira, em tecidos infectados na superfície do solo e durante a compostagem de restos de poda. Mudas de videira 'Festival' foram inoculadas com mutante resistente à rifampicina Xcv2Rif e mantidas em casa de vegetação até apresentarem alta severidade da doença. No primeiro experimento, ramos fragmentados e folhas inteiras destas plantas foram acondicionados em bolsas de malha plástica e colocados na superfície de microparcelas. No segundo experimento, ramos e folhas fragmentados foram acondicionados em bolsas plásticas e depositados no interior de pilhas de compostagem de restos de poda de videira. A sobrevivência de Xcv2Rif em tecidos infectados foi monitorada a intervalos de 8 e 10 dias a partir do início do primeiro e segundo experimentos, respectivamente. No primeiro experimento, foi também avaliada a decomposição de tecidos, e no segundo, as curvas de temperatura das pilhas, conteúdo de fenóis e microbiota antagonista a Xcv2Rif. O patógeno sobreviveu em altas populações até 80 dias em tecidos infectados na superfície do solo. A compostagem eliminou Xcv2Rif de restos culturais em 10 dias, devido às altas temperaturas, liberação de compostos fenólicos e antagonismo microbiano. Concluindo, em tecidos infectados de videira Xcv sobrevive na superfície do solo por, pelo menos, 80 dias mas é eliminada pela compostagem em 10 dias.

  9. Aconitase B is required for optimal growth of Xanthomonas campestris pv. vesicatoria in pepper plants.

    Directory of Open Access Journals (Sweden)

    Janine Kirchberg

    Full Text Available The aerobic plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria (Xcv colonizes the intercellular spaces of pepper and tomato. One enzyme that might contribute to the successful proliferation of Xcv in the host is the iron-sulfur protein aconitase, which catalyzes the conversion of citrate to isocitrate in the tricarboxylic acid (TCA cycle and might also sense reactive oxygen species (ROS and changes in cellular iron levels. Xcv contains three putative aconitases, two of which, acnA and acnB, are encoded by a single chromosomal locus. The focus of this study is aconitase B (AcnB. acnB is co-transcribed with two genes, XCV1925 and XCV1926, encoding putative nucleic acid-binding proteins. In vitro growth of acnB mutants was like wild type, whereas in planta growth and symptom formation in pepper plants were impaired. While acnA, XCV1925 or XCV1926 mutants showed a wild-type phenotype with respect to bacterial growth and in planta symptom formation, proliferation of the acnB mutant in susceptible pepper plants was significantly impaired. Furthermore, the deletion of acnB led to reduced HR induction in resistant pepper plants and an increased susceptibility to the superoxide-generating compound menadione. As AcnB complemented the growth deficiency of an Escherichia coli aconitase mutant, it is likely to be an active aconitase. We therefore propose that optimal growth and survival of Xcv in pepper plants depends on AcnB, which might be required for the utilization of citrate as carbon source and could also help protect the bacterium against oxidative stress.

  10. 十字花科黑腐病菌dsbA基因控制的亚细胞蛋白质组分析%Identification of Subcellular Proteomes Controlled by ds bA in Xanthomonas campestris pv.campestris

    Institute of Scientific and Technical Information of China (English)

    岑卫健; 刘龙宇; 于凯; 甘永亮; 付强; 姜伯乐

    2016-01-01

    本研究以十字花科黑腐病菌(Xanthomonas campestris pv.campestris,Xcc)8004菌株为研究对象,采用双向电泳—质谱技术分析比较了dsbA1A2突变体和野生型菌株的分泌蛋白、周质蛋白表达谱.与野生型菌株相比,选取的31个差异蛋白中,14个蛋白点显著上调,17个蛋白点显著下调.对这些蛋白质点进行质谱鉴定和分析,结果显示,dsbA1A2基因的缺失导致了周质蛋白中与β桶结构膜蛋白形成有关的伴侣蛋白SurA的含量降低,几种未知功能的分泌蛋白的分泌量减少以及外膜蛋白OmpW、OmpW1在周质空间的积累.推测这些蛋白质对Xcc8004的致病性至关重要,为进一步研究Xcc8004中DSB系统的作用机理提供了依据.

  11. 假定蛋白基因XC2038与十字花科黑腐病菌致病相关%Hypothetical Protein Gene XC2038 is Involved in the Pathogenicity of Xanthomonas campestris pv.campestris

    Institute of Scientific and Technical Information of China (English)

    蒋国凤; 吴秋菊; 韩路芬; 姜伯乐

    2015-01-01

    十字花科黑腐病菌(Xanthomonas campestris pv.campestris,Xcc)是研究植物病原细菌和寄主互作的模式细菌,鉴定其致病相关基因对于控制作物病害有重要的意义.XC2038在Xcc 8004中注释为功能未知的假定蛋白基因.本研究利用实验室前期构建的XC2038基因的Tn5gusA5插入突变体164H09,并构建了该突变体的互补菌株C164H09,随后对各菌株的致病性及相关表型进行了检测.结果表明,164H09影响Xcc 8004胞外多糖、泳动性及生物被膜的形成,影响在寄主满身红萝卜上的致病性,而突变体的互补菌株能将以上表型恢复至野生型水平.综上可知,假定蛋白基因XC2038与十字花科黑腐病菌致病相关.

  12. A hypothetical gene XC_3605 contributes to pathogenicity of Xanthomonas campestris pv.campestris%十字花科黑腐病菌中一个假定蛋白基因XC_3605与致病相关

    Institute of Scientific and Technical Information of China (English)

    王凛; 徐勇; 韦载娲; 阳丽艳; 杨丽超; 姜伯乐

    2016-01-01

    十字花科黑腐病菌(Xanthomonas campestris pv.campestris,Xcc)是全球范围内能引起十字花科植物黑腐病的重要植物病原细菌,也是研究植物病原细菌与植物互作机制的模式细菌.利用自杀质粒pK18mobsacB诱变十字花科黑腐病菌Xcc 8004的XC_3605基因,获得缺失突变体D3605.表型分析发现D3605胞外多糖合成能力、游动能力及致病力显著降低,积聚形成生物被膜的能力增强.用带有全长XC_3605基因序列的pLAFRJ对D3605进行功能互补,其胞外多糖产量、游动性、致病力和生物被膜均得到恢复.研究结果表明,XC_3605基因在十字花科黑腐病菌致病过程中发挥作用.

  13. The Xanthomonas campestris type III effector XopJ targets the host cell proteasome to suppress salicylic-acid mediated plant defence.

    Directory of Open Access Journals (Sweden)

    Suayib Üstün

    Full Text Available The phytopathogenic bacterium Xanthomonas campestris pv. vesicatoria (Xcv requires type III effector proteins (T3Es for virulence. After translocation into the host cell, T3Es are thought to interact with components of host immunity to suppress defence responses. XopJ is a T3E protein from Xcv that interferes with plant immune responses; however, its host cellular target is unknown. Here we show that XopJ interacts with the proteasomal subunit RPT6 in yeast and in planta to inhibit proteasome activity. A C235A mutation within the catalytic triad of XopJ as well as a G2A exchange within the N-terminal myristoylation motif abolishes the ability of XopJ to inhibit the proteasome. Xcv ΔxopJ mutants are impaired in growth and display accelerated symptom development including tissue necrosis on susceptible pepper leaves. Application of the proteasome inhibitor MG132 restored the ability of the Xcv ΔxopJ to attenuate the development of leaf necrosis. The XopJ dependent delay of tissue degeneration correlates with reduced levels of salicylic acid (SA and changes in defence- and senescence-associated gene expression. Necrosis upon infection with Xcv ΔxopJ was greatly reduced in pepper plants with reduced expression of NPR1, a central regulator of SA responses, demonstrating the involvement of SA-signalling in the development of XopJ dependent phenotypes. Our results suggest that XopJ-mediated inhibition of the proteasome interferes with SA-dependent defence response to attenuate onset of necrosis and to alter host transcription. A central role of the proteasome in plant defence is discussed.

  14. The PmrA/PmrB Two-Component System of Legionella pneumophila Is a Global Regulator Required for Intracellular Replication within Macrophages and Protozoa▿ †

    OpenAIRE

    Al-khodor, Souhaila; Kalachikov, Sergey; Morozova, Irina; Price, Christopher T.; Abu Kwaik, Yousef

    2008-01-01

    To examine the role of the PmrA/PmrB two-component system (TCS) of Legionella pneumophila in global gene regulation and in intracellular infection, we constructed pmrA and pmrB isogenic mutants by allelic exchange. Genome-wide microarray gene expression analyses of the pmrA and pmrB mutants at both the exponential and the postexponential phases have shown that the PmrA/PmrB TCS has a global effect on the expression of 279 genes classified into nine groups of genes encoding eukaryotic-like pro...

  15. ADJUSTMENT OF THE ROMANIAN ACCOUNTING REGULATIONS ACCORDING TO THE NEW REQUIREMENTS ENTAILED BY GLOBALIZATION AND THE ACCESSION OF ROMANIA TO THE EUROPEAN UNION

    Directory of Open Access Journals (Sweden)

    Lucian Constantin Gabriel BUDACIA

    2010-03-01

    Full Text Available The integration of inter-state relations and, ultimately, globalization imply the removal of some restrictions, the harmonization of certain regulations which would favor the development of trade exchanges, the expansion of multilateral cooperation, the transfer of technologies, the improvement and accessibility of the international financial-monetary system. As each element of the economic system, accountancy has to undergo changes and adjustments to the new trend of globalization, namely harmonization and integration, try to firstly adjust to local changes generated by the accession and adjustment of Romania to the EU and to international changes.

  16. Can the financialized atmosphere be effectively regulated? A critical analysis of the proposed Australian carbon pollution reduction scheme as a complex market solution to global warming

    Energy Technology Data Exchange (ETDEWEB)

    Windsor, C. [Bond Univ. (Australia); McNicholas, P. [Monash Univ. (Australia)

    2009-07-01

    A large body of scientific evidence indicates that global warming from human induced greenhouse gases (GHG) emissions is producing harmful climate change that will lead to global environmental and economic catastrophe within 10 years. The threat of human induced global warming has been on the international and public policy agenda for several years; for example on 11 December 1998, government representatives of 108 countries signed the United Nations Framework Convention on Climate Change (UNFCCC) an international agreement to reduce global warming or the Kyoto Protocol, with the then exception of the Australian and the United States (U.S.) governments. International action on GHG emissions reduction was thwarted by U.S. and Australian goverments. The then Australian government (1996-2007) surreptitiously funding by vested interests such as the coal industry, had no intention to act even though scientific evidence reported that Australia had begun to experience the detrimental effects of global warming. To fulfil an electoral promise, the center left Labor government signed the Kyoto Protocol on 3 December 2007. To deal with the global warming crisis, the Australian government has proposed an emissions trading scheme now officially called the 'Carbon Pollution Reduction Scheme' or CPRS. The proposed scheme is a cap and trade market mechanism that purportedly encourages businesses to operate more efficiently, thus reducing GHG emissions through price signalling in a government instigated market. Hence credible, transparent and efficient information underpins such a market in a post-Keynes deregulated world. The purpose of this paper is to critically examine the integrity of using current financial and reporting regulation that will oversee and monitor the veracity of newly commoditized carbon financial products, particularly since the global financial crisis has exposed significant financial regulatory weaknesses. Further we contend that current corporate

  17. [Identification of a gene involved in the expression of the pathogenicity-related gene XC3814 in Xanthomonas campestris].

    Science.gov (United States)

    Su, Hui-Zhao; Xiang, Zhi-Jiao; Peng, Fang-Yin; Li, Rui-Fang; An, Shi-Qi; Lu, Guang-Tao; Tang, Ji-Liang

    2010-01-01

    Xanthomonas campestris pv. campestris (Xcc) is the causal agent of the black rot disease of cruciferous plants. Our previous work had demonstrated that XC3814 is required for full virulence and extracellular polysaccharide production. In this work, the reporter plasmid pL3814sac was constructed by fusing the promoter region of XC3814 to the coding region of the gene sacB, and introduced into Xcc wild-type strain 8004. The resulted strain 8004/pL3814sac was mutagenized randomly by the transposon EZ::Tn5, and 3 mutant strains insensitive to sucrose were isolated. One of the mutants was due to the disruption of the open reading frame XC3882, which was assigned to code a hypothetical protein. To verify whether XC3882 has an impact on the expression level of XC3814, the reporter plasmid pGUS3814 was constructed by fusing the promoter region of XC3814 to the coding region of the gusA gene. This construct was introduced into the wild-type strain 8004 and the XC3882 mutant strain 190A10, which was derived from the transposon Tn5gusA5 insertion. The GUS activity, produced by pGUS3814 in the XC3882 mutant background, was reduced by 81.3% compared to that in the wild type background. These results indicate that the expression of XC3814 is influenced by XC3882.

  18. Evaluation of in vitro anticancer activity of Ocimum basilicum, Alhagi maurorum, Calendula officinalis and their parasite Cuscuta campestris.

    Directory of Open Access Journals (Sweden)

    Mandana Behbahani

    Full Text Available The present investigation was carried out to study the relationship between presence of cytotoxic compounds in Ocimum basilicum, Alhagi maurorum, Calendula officinalis and their parasite Cuscuta campestris. The cytotoxic activity of the pure compounds was performed by MTT assay against breast cancer cell lines (MCF-7 and MDA-MB-231 and normal breast cell line (MCF 10A. The induction of apoptosis was measured by the expression levels of p53, bcl-2, bax and caspase-3 genes using quantitative Real Time PCR. Three active fractions were detected by nuclear magnetic resonance as lutein, lupeol and eugenol, respectively, in C. officinalis, A. maurorum and O. basilicum. These compounds and their epoxidized forms were also detected in their parasite C. campestris. The cytotoxic activity of lutein epoxide, lupeol epoxide and eugenol epoxide was significantly more than lutein, lupeol and eugenol. The mRNA expression level of p53, caspase-3 and bax genes were increased in both cancer cells treated with all pure compounds. However, bcl-2 gene expression decreased in treated breast cancer cells. In conclusion, all the data indicated that the epoxide forms of lupeol, lutein and eugenol are potential drug candidates for inducing apoptosis in human breast cancer cells.

  19. Evaluation of in vitro anticancer activity of Ocimum basilicum, Alhagi maurorum, Calendula officinalis and their parasite Cuscuta campestris.

    Science.gov (United States)

    Behbahani, Mandana

    2014-01-01

    The present investigation was carried out to study the relationship between presence of cytotoxic compounds in Ocimum basilicum, Alhagi maurorum, Calendula officinalis and their parasite Cuscuta campestris. The cytotoxic activity of the pure compounds was performed by MTT assay against breast cancer cell lines (MCF-7 and MDA-MB-231) and normal breast cell line (MCF 10A). The induction of apoptosis was measured by the expression levels of p53, bcl-2, bax and caspase-3 genes using quantitative Real Time PCR. Three active fractions were detected by nuclear magnetic resonance as lutein, lupeol and eugenol, respectively, in C. officinalis, A. maurorum and O. basilicum. These compounds and their epoxidized forms were also detected in their parasite C. campestris. The cytotoxic activity of lutein epoxide, lupeol epoxide and eugenol epoxide was significantly more than lutein, lupeol and eugenol. The mRNA expression level of p53, caspase-3 and bax genes were increased in both cancer cells treated with all pure compounds. However, bcl-2 gene expression decreased in treated breast cancer cells. In conclusion, all the data indicated that the epoxide forms of lupeol, lutein and eugenol are potential drug candidates for inducing apoptosis in human breast cancer cells.

  20. Cloning, crystallization and preliminary X-ray study of XC1258, a CN-hydrolase superfamily protein from Xanthomonas campestris

    Energy Technology Data Exchange (ETDEWEB)

    Tsai, Ying-Der; Chin, Ko-Hsin [Institute of Biochemistry, National Chung-Hsing University, Taichung 40227,Taiwan (China); Shr, Hui-Lin [Institute of Biological Chemistry, Academia Sinica, Nankang, Taipei,Taiwan (China); Core Facility for Protein Crystallography, Academia Sinica, Nankang, Taipei,Taiwan (China); Gao, Fei Philip [National High Magnetic Field Laboratory, Florida State University, Tallahassee, FL 32310 (United States); Lyu, Ping-Chiang [Department of Life Science, National Tsing Hua University, Hsin-Chu,Taiwan (China); Wang, Andrew H.-J. [Institute of Biological Chemistry, Academia Sinica, Nankang, Taipei,Taiwan (China); Core Facility for Protein Crystallography, Academia Sinica, Nankang, Taipei,Taiwan (China); Chou, Shan-Ho, E-mail: shchou@nchu.edu.tw [Institute of Biochemistry, National Chung-Hsing University, Taichung 40227,Taiwan (China)

    2006-10-01

    A CN-hydrolase superfamily protein from the plant pathogen X. campestris has been overexpressed in E. coli, purified and crystallized. CN-hydrolase superfamily proteins are involved in a wide variety of non-peptide carbon–nitrogen hydrolysis reactions, producing some important natural products such as auxin, biotin, precursors of antibiotics etc. These reactions all involve attack on a cyano or carbonyl carbon by a conserved novel catalytic triad Glu-Lys-Cys through a thiol acylenzyme intermediate. However, classification into the CN-hydrolase superfamily based on sequence similarity alone is not straightforward and further structural data are necessary to improve this categorization. Here, the cloning, expression, crystallization and preliminary X-ray analysis of XC1258, a CN-hydrolase superfamily protein from the plant pathogen Xanthomonas campestris (Xcc), are reported. The SeMet-substituted XC1258 crystals diffracted to a resolution of 1.73 Å. They are orthorhombic and belong to space group P2{sub 1}2{sub 1}2, with unit-cell parameters a = 143.8, b = 154.63, c = 51.3 Å, respectively.

  1. Onboard Hydrogen/Helium Sensors in Support of the Global Technical Regulation: An Assessment of Performance in Fuel Cell Electric Vehicle Crash Tests

    Energy Technology Data Exchange (ETDEWEB)

    Post, M. B.; Burgess, R.; Rivkin, C.; Buttner, W.; O' Malley, K.; Ruiz, A.

    2012-09-01

    Automobile manufacturers in North America, Europe, and Asia project a 2015 release of commercial hydrogen fuel cell powered light-duty road vehicles. These vehicles will be for general consumer applications, albeit initially in select markets but with much broader market penetration expected by 2025. To assure international harmony, North American, European, and Asian regulatory representatives are striving to base respective national regulations on an international safety standard, the Global Technical Regulation (GTR), Hydrogen Fueled Vehicle, which is part of an international agreement pertaining to wheeled vehicles and equipment for wheeled vehicles.

  2. Significant rewiring of the transcriptome and proteome of an Escherichia coli strain harboring a tailored exogenous global regulator IrrE.

    Directory of Open Access Journals (Sweden)

    Tingjian Chen

    Full Text Available Cell reprogramming for microorganisms via engineered or artificial transcription factors and RNA polymerase mutants has presented a powerful tool for eliciting complex traits that are practically useful particularly for industrial strains, and for understanding at the global level the regulatory network of gene transcription. We previously further showed that an exogenous global regulator IrrE (derived from the extreme radiation-resistant bacterium Deinococcus radiodurans can be tailored to confer Escherichia coli (E. coli with significantly enhanced tolerances to different stresses. In this work, based on comparative transcriptomic and proteomic analyses of the representative strains E1 and E0, harboring the ethanol-tolerant IrrE mutant E1 and the ethanol-intolerant wild type IrrE, respectively, we found that the transcriptome and proteome of E. coli were extensively rewired by the tailored IrrE protein. Overall, 1196 genes (or approximately 27% of E. coli genes were significantly altered at the transcriptomic level, including notably genes in the nitrate-nitrite-nitric oxide (NO pathway, and genes for non-coding RNAs. The proteomic profile revealed significant up- or downregulation of several proteins associated with syntheses of the cell membrane and cell wall. Analyses of the intracellular NO level and cell growth under reduced temperature supported a close correlation between NO and ethanol tolerance, and also suggests a role for membrane fluidity. The significantly different omic profiles of strain E1 indicate that IrrE functions as a global regulator in E. coli, and that IrrE may be evolved for other cellular tolerances. In this sense, it will provide synthetic biology with a practical and evolvable regulatory "part" that operates at a higher level of complexity than local regulators. This work also suggests a possibility of introducing and engineering other exogenous global regulators to rewire the genomes of microorganism cells.

  3. Colonización radical por endófitos fúngicos en Trithrinax campestris (Arecaceae de ecosistemas semiáridos del centro de Argentina Root colonization by fungal endophytes in Trithrinax campestris (Arecaceae from semiarid ecosystems from Central Argentine

    Directory of Open Access Journals (Sweden)

    Mónica A Lugo

    2011-12-01

    Full Text Available En ecosistemas áridos y semiáridos las raíces de las plantas suelen formar simbiosis con hongos, los que les proporcionan nutrientes y agua. Poco se conoce sobre los hongos asociados a palmeras nativas y cómo éstos podrían estar relacionados entre ellos. Se describe y cuantifica la colonización radical de los simbiontes de Trithrinax campestris en poblaciones leve y fuertemente afectadas por el fuego. T. campestris fue colonizada por hongos micorrícico-arbusculares (HMA y endófitos septados oscuros (ESO. La colonización por HMA fue del tipo intermedio entre los tipos Arum y Paris. La colonización por HMA y ESO y la producción de pelos radicales, presentó diferencias entre las poblaciones estudiadas. Los resultados sugieren que en T. campestris la relación entre hongos simbiontes/producción de pelos radicales podrían estar relacionada con su alta tolerancia al fuego y la aridez.In arid and semiarid ecosystems, roots frequently form symbiosis with fungi that provides access to nutrients and water. Knowledge regarding the study of fungal symbionts colonizing native palms roots is still scarce. We described, quantified and compared fungal colonization in roots of Trithrinax campestris from two environmental situations: population with weak-burning-signs and population with strong-burning-signs. T. campestris was colonized by arbuscular-mycorrhizal-fungi (AMF and dark-septate-endophytes (DSE. AMF colonization was an intermediate type between Arum and Paris. The AMF and DSE colonization and root hair production differed between populations. Our results suggest that in T. campestris the relation between fungal-symbionts and root-hair-production might be related to tolerance to burning and aridity.

  4. DNA methylation-mediated down-regulation of DNA methyltransferase-1 (DNMT1) is coincident with, but not essential for, global hypomethylation in human placenta.

    Science.gov (United States)

    Novakovic, Boris; Wong, Nick C; Sibson, Mandy; Ng, Hong-Kiat; Morley, Ruth; Manuelpillai, Ursula; Down, Thomas; Rakyan, Vardhman K; Beck, Stephan; Hiendleder, Stefan; Roberts, Claire T; Craig, Jeffrey M; Saffery, Richard

    2010-03-26

    The genome of extraembryonic tissue, such as the placenta, is hypomethylated relative to that in somatic tissues. However, the origin and role of this hypomethylation remains unclear. The DNA methyltransferases DNMT1, -3A, and -3B are the primary mediators of the establishment and maintenance of DNA methylation in mammals. In this study, we investigated promoter methylation-mediated epigenetic down-regulation of DNMT genes as a potential regulator of global methylation levels in placental tissue. Although DNMT3A and -3B promoters lack methylation in all somatic and extraembryonic tissues tested, we found specific hypermethylation of the maintenance DNA methyltransferase (DNMT1) gene and found hypomethylation of the DNMT3L gene in full term and first trimester placental tissues. Bisulfite DNA sequencing revealed monoallelic methylation of DNMT1, with no evidence of imprinting (parent of origin effect). In vitro reporter experiments confirmed that DNMT1 promoter methylation attenuates transcriptional activity in trophoblast cells. However, global hypomethylation in the absence of DNMT1 down-regulation is apparent in non-primate placentas and in vitro derived human cytotrophoblast stem cells, suggesting that DNMT1 down-regulation is not an absolute requirement for genomic hypomethylation in all instances. These data represent the first demonstration of methylation-mediated regulation of the DNMT1 gene in any system and demonstrate that the unique epigenome of the human placenta includes down-regulation of DNMT1 with concomitant hypomethylation of the DNMT3L gene. This strongly implicates epigenetic regulation of the DNMT gene family in the establishment of the unique epigenetic profile of extraembryonic tissue in humans.

  5. Fertilization in Brassica campestris ssp.pekinensis and its duration of each stage

    Institute of Scientific and Technical Information of China (English)

    PENG Jie; SHEN Jiaheng

    2007-01-01

    This paper reports the process of fertilization in Brassica campestris ssp.pekinensis and the duration of each stage.The results are as follows:(1)Pollen germinates on stigma 2-3 h after pollination.(2)4-8 h after pollination,pollen tube grows in the style.(3)8-14 h after pollination,pollen tube grows in the ovary and gets into the ovule via the micropyle.(4)16 h after pollination,one sperm nucleus moves to the egg and enters it.(5)The sperm nucleus adheres to the nuclear membrane of the egg 18 h after pollination.(6)20 h after pollination,it enters the egg nucleus and male chromatin gradually disperses and 24 h after pollination,a male nucleolus appears.A large female nucleolus and a small male nucleolus occur in the nucleus of the fertilized egg,and zygote formed.The dispersing of sperm chromatin in the egg nucleus takes about 4 h.(7)32--34 h after pollination,the division of zygote begins.The dormancy stage of the zygote lasts for about 8-10 h.(8)The pair polar nuclei lie in the chalazal end of the egg betbre fertilization,which may fuse into a secondary nucleus or not.(9)16-18 h after pollination,the sperm nucleus moves to the polar nuclei or the secondary nucleus.18 h after pollination,the sperm nucleus adheres to the nuclear membrane of the polar nuclei or that of the secondary nucleus.(10)20 h after pollination,the sperm nucleus enters one of the polar nuclei or the secondary nucleus and a triple fusion takes place.The process of fusion is similar to the karyogamy but faster.The dispersing of the sperm chromatin in the polar nucleus or secondary nucleus takes about 2 h.(11)22 h after pollination,the primary endosperm nucleus formed.The female and male nucleoli cannot fuse with each other betbre mitotic division of the primary endosperm nucleus.(12)24 h after pollination,the division of the primary endosperm nucleus actually takes place.

  6. Crystal structure and functional analysis of the glutaminyl cyclase from Xanthomonas campestris.

    Science.gov (United States)

    Huang, Wei-Lin; Wang, Yu-Ruei; Ko, Tzu-Ping; Chia, Cho-Yun; Huang, Kai-Fa; Wang, Andrew H-J

    2010-08-20

    Glutaminyl cyclases (QCs) (EC 2.3.2.5) catalyze the formation of pyroglutamate (pGlu) at the N-terminus of many proteins and peptides, a critical step for the maturation of these bioactive molecules. Proteins having QC activity have been identified in animals and plants, but not in bacteria. Here, we report the first bacterial QC from the plant pathogen Xanthomonas campestris (Xc). The crystal structure of the enzyme was solved and refined to 1.44-A resolution. The structure shows a five-bladed beta-propeller and exhibits a scaffold similar to that of papaya QC (pQC), but with some sequence deletions and conformational changes. In contrast to the pQC structure, the active site of XcQC has a wider substrate-binding pocket, but its accessibility is modulated by a protruding loop acting as a flap. Enzyme activity analyses showed that the wild-type XcQC possesses only 3% QC activity compared to that of pQC. Superposition of those two structures revealed that an active-site glutamine residue in pQC is substituted by a glutamate (Glu(45)) in XcQC, although position 45 is a glutamine in most bacterial QC sequences. The E45Q mutation increased the QC activity by an order of magnitude, but the mutation E45A led to a drop in the enzyme activity, indicating the critical catalytic role of this residue. Further mutagenesis studies support the catalytic role of Glu(89) as proposed previously and confirm the importance of several conserved amino acids around the substrate-binding pocket. XcQC was shown to be weakly resistant to guanidine hydrochloride, extreme pH, and heat denaturations, in contrast to the extremely high stability of pQC, despite their similar scaffold. On the basis of structure comparison, the low stability of XcQC may be attributed to the absence of both a disulfide linkage and some hydrogen bonds in the closure of beta-propeller structure. These results significantly improve our understanding of the catalytic mechanism and extreme stability of type I QCs

  7. Comment on ‘An index-based framework for assessing patterns and trends in river fragmentation and flow regulation by global dams at multiple scales’

    Science.gov (United States)

    Hennig, Thomas; Magee, Darrin

    2017-03-01

    In their article ‘An index-based framework for assessing patterns and trends in river fragmentation and flow regulation by global dams at multiple scales’ (2015 Environ. Res. Lett. 10 015001), Grill et al utilized a graph-based river routing model to simultaneously assess flow regulation and fragmentation by dams at multiple scales. Using global dam data they developed the river fragmentation index and the river regulation index, both based on river volume. Their results indicate that, on a global basis, 48% of river volume is moderately to severely impacted by either flow regulation, fragmentation, or both. Assuming completion of all dams planned and under construction in their future scenario, Grill et al find this number would rise to 93%, an effect they attribute largely to dam construction in the Amazon Basin. They also provide evidence for the importance of considering small- to medium-sized dams. We find this approach interesting and the analysis straightforward, but in this response note some limitations to the Asia-specific data on which the analysis is based. China and India are not only the two most populous countries, but are home to the vast majority of the world’s largest dams and reservoirs, numbers which will rapidly increase in the future. Grill et al however, limit their modeling and subsequent basin assessment (flow regulation and river fragmentation) to less than ten percent of existing and forthcoming dams in those two countries. While we suspect this is due to data limitations, it results in what we feel are significant misinterpretations of the future of dams and rivers across much of Asia.

  8. Identification of a virulence gene of Xanthomonas campestris pv. campestris%十字花科黑腐病菌一个致病相关基因的鉴定

    Institute of Scientific and Technical Information of China (English)

    何勇强; 赵露金; 陈博雯; 孙伟; 张穗生; 刘丹; 王兵; 唐纪良

    2009-01-01

    十字花科黑腐病菌(Xanthomonas campestris pv.campestris,简称Xcc)8004菌株的一个转座子插入突变体186807,其Tn5gusA5插入位点位于一个推测的双组分调控系统的感受蛋白基因XC2229中.该突变体对寄主植物满身红萝卜的致病力显著降低.为了进一步证实XC2229基因与该菌致病力之间的相关性,本工作构建了该基因的缺失突变体DM2229.DM2229与186B07在寄主上的致病力基本一致,均显著低于野生型Xcc 8004.生化及表型检测结果表明,DM2229的胞外多糖(exopolysaccharides,EPS)产量降低,细胞运动能力减弱.用带有完整XC2229基因的pLALR6互补DM2229,互补菌株CDM2229在EPS合成、细胞运动能力以及致病力方面与野生型Xcc 8004基本一致.这些实验结果表明,XC2229是一个与EPS合成、细菌运动相关的基因.推测该基因通过调控EPS的生成和运动能力而影响Xcc的致病力.

  9. Identification of a Gene Involved in Pigment Synthesis in Xanthomonas campestris pv.campestris%十字花科黑腐病菌中一个与黄色素合成相关基因的鉴定

    Institute of Scientific and Technical Information of China (English)

    杨国奎; 祁艳华; 朱艳宁; 冷明; 叶玉云; 苏辉昭; 陆光涛

    2014-01-01

    十字花科黑腐病菌(Xanthomonas campestris pv.campestris,简称Xcc)能够产生大量的胞外多糖.胞外多糖商品名又称为黄原胶,具有广泛用途,在食品生产中可作为添加剂使用.为了得到不含黄色素的黄原胶,我们采用转座子EZ-Tn5随机插入诱变的方法对8004菌株进行突变,获得了一株不产黄色素的突变体.通过对突变体的转座子EZ-Tn5插入位点进行分析,发现该突变体是由于编号为XC_ 4097的基因被插入突变后衍生而来.同源性分析表明XC 4097编码一种脂质酰基转移酶,它与脂质的合成有关.采用同源双交换方法构建XC 4097基因的缺失突变体.通过对野生菌、突变体以及功能回补体的表型分析进一步证实了XC 4097基因功能的丧失只影响黑腐病菌黄色素的合成,而不影响细菌生长以及胞外多糖的合成.这为工业上生产无黄色素的黄原胶提供了应用基础.

  10. A global transcriptional regulator in Thermococcus kodakaraensis controls the expression levels of both glycolytic and gluconeogenic enzyme-encoding genes

    NARCIS (Netherlands)

    Kanai, T.; Akerboom, A.P.; Takedomi, S.; Werken, van de H.J.G.; Blombach, F.; Oost, van der J.; Murakami, T.; Atomi, H.; Imanaka, T.

    2007-01-01

    We identified a novel regulator, Thermococcales glycolytic regulator (Tgr), functioning as both an activator and a repressor of transcription in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1. Tgr (TK1769) displays similarity (28% identical) to Pyrococcus furiosus TrmB (PF1743), a tr

  11. A Csr-type regulatory system, including small non-coding RNAs, regulates the global virulence regulator RovA of Yersinia pseudotuberculosis through RovM.

    Science.gov (United States)

    Heroven, Ann Kathrin; Böhme, Katja; Rohde, Manfred; Dersch, Petra

    2008-06-01

    The MarR-type regulator RovA controls expression of virulence genes of Yersinia pseudotuberculosis in response to environmental signals. Using a genetic strategy to discover components that influence rovA expression, we identified new regulatory factors with homology to components of the carbon storage regulator system (Csr). We showed that overexpression of a CsrB- or a CsrC-type RNA activates rovA, whereas a CsrA-like protein represses RovA synthesis. We further demonstrate that influence of the Csr system on rovA is indirect and occurs through control of the LysR regulator RovM, which inhibits rovA transcription. The CsrA protein had also a major influence on the motility of Yersinia, which was independent of RovM. The CsrB and CsrC RNAs are differentially expressed in Yersinia. CsrC is highly induced in complex but not in minimal media, indicating that medium-dependent rovM expression is mediated through CsrC. CsrB synthesis is generally very low. However, overexpression of the response regulator UvrY was found to activate CsrB production, which in turn represses CsrC synthesis independent of the growth medium. In summary, the post-transcriptional Csr-type components were shown to be key regulators in the co-ordinated environmental control of physiological processes and virulence factors, which are crucial for the initiation of Yersinia infections.

  12. The Future of Governance in the Global Bioeconomy: Policy, Regulation, and Investment Challenges for the Biotechnology and Bioenergy Sectors

    NARCIS (Netherlands)

    Wesseler, J.H.H.; Spielmann, M.; Demont, M.

    2010-01-01

    Today more than ever, the global bioeconomy is the subject of focused attention from public policymakers, corporate decision makers, researchers in the social and biophysical sciences, and the general public. With both short- and long-term shifts in the world’s demand and supply of agricultural and

  13. Proteomic Analysis of a Global Regulator GacS Sensor Kinase in the Rhizobacterium, Pseudomonas chlororaphis O6

    Directory of Open Access Journals (Sweden)

    Chul Hong Kim

    2014-06-01

    Full Text Available The GacS/GacA system in the root colonizer Pseudomonas chlororaphis O6 is a key regulator of many traits relevant to the biocontrol function of this bacterium. Proteomic analysis revealed 12 proteins were down-regulated in a gacS mutant of P. chlororaphis O6. These GacS-regulated proteins functioned in combating oxidative stress, cell signaling, biosynthesis of secondary metabolism, and secretion. The extent of regulation was shown by real-time RT-PCR to vary between the genes. Mutants of P. chlororaphis O6 were generated in two GacS-regulated genes, trpE, encoding a protein involved in tryptophan synthesis, and prnA, required for conversion of tryptophan to the antimicrobial compound, pyrrolitrin. Failure of the trpE mutant to induce systemic resistance in tobacco against a foliar pathogen causing soft rot, Pectobacterium carotovorum SCCI, correlated with reduced colonization of root surfaces implying an inadequate supply of tryptophan to support growth. Although colonization was not affected by mutation in the prnA gene, induction of systemic resistance was reduced, suggesting that pyrrolnitrin was an activator of plant resistance as well as an antifungal agent. Study of mutants in the other GacS-regulated proteins will indicate further the features required for biocontrol-activity in this rhizobacterium.

  14. Role of the global transcriptional regulator PrrA in Rhodobacter sphaeroides 2.4.1: combined transcriptome and proteome analysis

    Energy Technology Data Exchange (ETDEWEB)

    Eraso, Jesus M.; Roh, Jung Hyeob; Zeng, Xiaohua; Callister, Stephen J.; Lipton, Mary S.; Kaplan, Samuel

    2008-07-01

    The PrrBA two-component regulatory system is a major global regulator in Rhodobacter sphaeroides 2.4.1. In this study we have compared the transcriptome and proteome profiles of the wild type (WT) and mutant PrrA2 cells grown anaerobically, in the dark, with DMSO as electron acceptor. Approximately 25% of the genes present in the genome are PrrA-regulated, at the transcriptional level, either directly or indirectly, by ≥ 2-fold relative to wild type. The genes affected are widespread throughout all COG functional categories, with previously unsuspected “metabolic” genes affected when in the PrrA mutant background. PrrA was found to act both as an activator and a repressor of transcription, with more genes being repressed in the presence of PrrA (9:5 ratio). An analysis of the genes encoding the 1,536 peptides detected through our chromatographic study, which corresponds to 36% coverage of the genome, revealed that approximately 20% of the genes encoding these proteins were positively regulated, whereas approximately 32% were negatively regulated by PrrA, which is in excellent agreement with the percentages obtained for the whole genomic transcriptome profile. In addition, comparison of the transcriptome and proteome mean parameter values chosen between WT and PrrA2 showed good qualitative agreement, indicating that transcript regulation paralleled the corresponding protein abundance, although not one for one. The microarray analysis was validated by direct mRNA measurement of randomly selected, both positively and negatively regulated genes. lacZ transcriptional and kan translational fusions enabled us to map putative PrrA binding sites, as well as revealing potential gene targets for indirect regulation by PrrA.

  15. IrrE, a global regulator of extreme radiation resistance in Deinococcus radiodurans, enhances salt tolerance in Escherichia coli and Brassica napus.

    Directory of Open Access Journals (Sweden)

    Jie Pan

    Full Text Available BACKGROUND: Globally, about 20% of cultivated land is now affected by salinity. Salt tolerance is a trait of importance to all crops in saline soils. Previous efforts to improve salt tolerance in crop plants have met with only limited success. Bacteria of the genus Deinococcus are known for their ability to survive highly stressful conditions, and therefore possess a unique pool of genes conferring extreme resistance. In Deinococcus radiodurans, the irrE gene encodes a global regulator responsible for extreme radioresistance. METHODOLOGY/PRINCIPAL FINDINGS: Using plate assays, we showed that IrrE protected E. coli cells against salt shock and other abiotic stresses such as oxidative, osmotic and thermal shocks. Comparative proteomic analysis revealed that IrrE functions as a switch to regulate different sets of proteins such as stress responsive proteins, protein kinases, glycerol-degrading enzymes, detoxification proteins, and growth-related proteins in E. coli. We also used quantitative RT-PCR to investigate expression of nine selected stress-responsive genes in transgenic and wild-type Brassica napus plants. Transgenic B. napus plants expressing the IrrE protein can tolerate 350 mM NaCl, a concentration that inhibits the growth of almost all crop plants. CONCLUSIONS: Expression of IrrE, a global regulator for extreme radiation resistance in D. radiodurans, confers significantly enhanced salt tolerance in both E. coli and B. napus. We thus propose that the irrE gene might be used as a potentially promising transgene to improve abiotic stress tolerances in crop plants.

  16. GLOBALIZATION AND BUSINESS ETHICS

    OpenAIRE

    Khadartseva, L.; Agnaeva, L.

    2014-01-01

    It is assumed that local conditions of markets may be different, but some global markets, ethics and social responsibility principles should be applicable to all markets. As markets globalize and an increasing proportion of business activity transcends national borders, institutions need to help manage, regulate, and police the global marketplace, and to promote the establishment of multinational treaties to govern the global business system

  17. Multiplex PCR for specific and robust detection of Xanthomonas campestris pv. musacearum in pure culture and infected plant material

    DEFF Research Database (Denmark)

    Adriko, John; Aritua, V.; Mortensen, Carmen Nieves

    2012-01-01

    The present study developed a pathovar-specific PCR for the detection of Xanthomonas campestris pv. musacearum (Xcm), the cause of banana xanthomonas wilt, by amplification of a 265-bp region of the gene encoding the general secretion pathway protein D (GspD). A distinct DNA fragment of the expec......The present study developed a pathovar-specific PCR for the detection of Xanthomonas campestris pv. musacearum (Xcm), the cause of banana xanthomonas wilt, by amplification of a 265-bp region of the gene encoding the general secretion pathway protein D (GspD). A distinct DNA fragment...... was subsequently demonstrated in tests on artificially inoculated screenhouse cultivars of banana and field bananas with and without symptoms sampled from different parts of Uganda. This study therefore demonstrated a robust and specific Xcm diagnostic tool with the added advantage of applying internal PCR...

  18. Transcriptome meta-analysis reveals common differential and global gene expression profiles in cystic fibrosis and other respiratory disorders and identifies CFTR regulators.

    Science.gov (United States)

    Clarke, Luka A; Botelho, Hugo M; Sousa, Lisete; Falcao, Andre O; Amaral, Margarida D

    2015-11-01

    A meta-analysis of 13 independent microarray data sets was performed and gene expression profiles from cystic fibrosis (CF), similar disorders (COPD: chronic obstructive pulmonary disease, IPF: idiopathic pulmonary fibrosis, asthma), environmental conditions (smoking, epithelial injury), related cellular processes (epithelial differentiation/regeneration), and non-respiratory "control" conditions (schizophrenia, dieting), were compared. Similarity among differentially expressed (DE) gene lists was assessed using a permutation test, and a clustergram was constructed, identifying common gene markers. Global gene expression values were standardized using a novel approach, revealing that similarities between independent data sets run deeper than shared DE genes. Correlation of gene expression values identified putative gene regulators of the CF transmembrane conductance regulator (CFTR) gene, of potential therapeutic significance. Our study provides a novel perspective on CF epithelial gene expression in the context of other lung disorders and conditions, and highlights the contribution of differentiation/EMT and injury to gene signatures of respiratory disease.

  19. ChIP-seq reveals the global regulator AlgR mediating cyclic di-GMP synthesis in Pseudomonas aeruginosa.

    Science.gov (United States)

    Kong, Weina; Zhao, Jingru; Kang, Huaping; Zhu, Miao; Zhou, Tianhong; Deng, Xin; Liang, Haihua

    2015-09-30

    AlgR is a key transcriptional regulator required for the expression of multiple virulence factors, including type IV pili and alginate in Pseudomonas aeruginosa. However, the regulon and molecular regulatory mechanism of AlgR have yet to be fully elucidated. Here, among 157 loci that were identified by a ChIP-seq assay, we characterized a gene, mucR, which encodes an enzyme that synthesizes the intracellular second messenger cyclic diguanylate (c-di-GMP). A ΔalgR strain produced lesser biofilm than did the wild-type strain, which is consistent with a phenotype controlled by c-di-GMP. AlgR positively regulates mucR via direct binding to its promoter. A ΔalgRΔmucR double mutant produced lesser biofilm than did the single ΔalgR mutant, demonstrating that c-di-GMP is a positive regulator of biofilm formation. AlgR controls the levels of c-di-GMP synthesis via direct regulation of mucR. In addition, the cognate sensor of AlgR, FimS/AlgZ, also plays an important role in P. aeruginosa virulence. Taken together, this study provides new insights into the AlgR regulon and reveals the involvement of c-di-GMP in the mechanism underlying AlgR regulation.

  20. Global genomic profiling reveals an extensive p53-regulated autophagy program contributing to key p53 responses

    OpenAIRE

    Kenzelmann Broz, Daniela; Spano Mello, Stephano; Bieging, Kathryn T.; Jiang, Dadi; Dusek, Rachel L.; Brady, Colleen A.; Sidow, Arend; Attardi, Laura D

    2013-01-01

    To gain new insights into p53 biology, Kenzelmann Broz et al. used high-throughput sequencing to analyze global p53 transcriptional networks in primary mouse embryo fibroblasts in response to DNA damage. This approach identified autophagy genes as direct p53 target genes. p53-induced autophagy was important for both p53-dependent apoptosis and transformation suppression by p53. These data highlight an intimate connection between p53 and autophagy and suggest that autophagy contributes to p53-...

  1. Global Health Observatory (GHO)

    Science.gov (United States)

    ... Data repository Reports Country statistics Map gallery Standards Global Health Observatory (GHO) data Monitoring health for the ... Health financing Health workforce 3.d National and global health risks International Health Regulations (2005) Monitoring Framework ...

  2. Genome-Wide Analysis of the Role of Global Transcriptional Regulator GntR1 in Corynebacterium glutamicum

    OpenAIRE

    Tanaka, Yuya; Takemoto, Norihiko; Ito, Terukazu; Teramoto, Haruhiko; Yukawa, Hideaki; Inui, Masayuki

    2014-01-01

    The transcriptional regulator GntR1 downregulates the genes for gluconate catabolism and pentose phosphate pathway in Corynebacterium glutamicum. Gluconate lowers the DNA binding affinity of GntR1, which is probably the mechanism of gluconate-dependent induction of these genes. In addition, GntR1 positively regulates ptsG, a gene encoding a major glucose transporter, and pck, a gene encoding phosphoenolpyruvate carboxykinase. Here, we searched for the new target of GntR1 on a genome-wide scal...

  3. Role of the multidrug resistance regulator MarA in global regulation of the hdeAB acid resistance operon in Escherichia coli.

    Science.gov (United States)

    Ruiz, Cristian; McMurry, Laura M; Levy, Stuart B

    2008-02-01

    MarA, a transcriptional regulator in Escherichia coli, affects functions such as multiple-antibiotic resistance (Mar) and virulence. Usually an activator, MarA is a repressor of hdeAB and other acid resistance genes. We found that, in wild-type cells grown in LB medium at pH 7.0 or pH 5.5, repression of hdeAB by MarA occurred only in stationary phase and was reduced in the absence of H-NS and GadE, the main regulators of hdeAB. Moreover, repression of hdeAB by MarA was greater in the absence of GadX or Lrp in exponential phase at pH 7.0 and in the absence of GadW or RpoS in stationary phase at pH 5.5. In turn, MarA enhanced repression of hdeAB by H-NS and hindered activation by GadE in stationary phase and also reduced the activity of GadX, GadW, RpoS, and Lrp on hdeAB under some conditions. As a result of its direct and indirect effects, overexpression of MarA prevented most of the induction of hdeAB expression as cells entered stationary phase and made the cells sevenfold more sensitive to acid challenge at pH 2.5. These findings show that repression of hdeAB by MarA depends on pH, growth phase, and other regulators of hdeAB and is associated with reduced resistance to acid conditions.

  4. In silico clustering of Salmonella global gene expression data reveals novel genes co-regulated with the SPI-1 virulence genes through HilD

    Science.gov (United States)

    Martínez-Flores, Irma; Pérez-Morales, Deyanira; Sánchez-Pérez, Mishael; Paredes, Claudia C.; Collado-Vides, Julio; Salgado, Heladia; Bustamante, Víctor H.

    2016-01-01

    A wide variety of Salmonella enterica serovars cause intestinal and systemic infections to humans and animals. Salmonella Patogenicity Island 1 (SPI-1) is a chromosomal region containing 39 genes that have crucial virulence roles. The AraC-like transcriptional regulator HilD, encoded in SPI-1, positively controls the expression of the SPI-1 genes, as well as of several other virulence genes located outside SPI-1. In this study, we applied a clustering method to the global gene expression data of S. enterica serovar Typhimurium from the COLOMBOS database; thus genes that show an expression pattern similar to that of SPI-1 genes were selected. This analysis revealed nine novel genes that are co-expressed with SPI-1, which are located in different chromosomal regions. Expression analyses and protein-DNA interaction assays showed regulation by HilD for six of these genes: gtgE, phoH, sinR, SL1263 (lpxR) and SL4247 were regulated directly, whereas SL1896 was regulated indirectly. Interestingly, phoH is an ancestral gene conserved in most of bacteria, whereas the other genes show characteristics of genes acquired by Salmonella. A role in virulence has been previously demonstrated for gtgE, lpxR and sinR. Our results further expand the regulon of HilD and thus identify novel possible Salmonella virulence genes. PMID:27886269

  5. Inducible Expression of the De-Novo Designed Antimicrobial Peptide SP1-1 in Tomato Confers Resistance to Xanthomonas campestris pv. vesicatoria

    Science.gov (United States)

    Herrera Diaz, Areli; Kovacs, Izabella; Lindermayr, Christian

    2016-01-01

    Antimicrobial peptides (AMPs) are small peptides with less than 50 amino acids and are part of the innate immune response in almost all organisms, including bacteria, vertebrates, invertebrates and plants. AMPs are active against a broad-spectrum of pathogens. The inducible expression of AMPs in plants is a promising approach to combat plant pathogens with minimal negative side effects, such as phytotoxicity or infertility. In this study, inducible expression of the de-novo designed AMP SP1-1 in Micro Tom tomato protected tomato fruits against bacterial spot disease caused by Xanthomonas campestris pv. vesicatoria. The peptide SP1-1 was targeted to the apoplast which is the primary infection site for plant pathogens, by fusing SP1-1 peptide to the signal peptide RsAFP1 of radish (Raphanus sativus). The pathogen inducibility of the expression was enabled by using an optimized inducible 4XW2/4XS promoter. As a result, the tomato fruits of independently generated SP1-1 transgenic lines were significantly more resistant to X. campestris pv. vesicatoria than WT tomato fruits. In transgenic lines, bacterial infection was reduced up to 65% in comparison to the infection of WT plants. Our study demonstrates that the combination of the 4XW2/4XS cis-element from parsley with the synthetic antimicrobial peptide SP1-1 is a good alternative to protect tomato fruits against infections with X. campestris pv. vesicatoria. PMID:27706237

  6. Characterization of BcMF23a and BcMF23b, two putative pectin methylesterase genes related to pollen development in Brassica campestris ssp. chinensis.

    Science.gov (United States)

    Lin, Sue; Huang, Li; Yu, Xiaolin; Xiong, Xingpeng; Yue, Xiaoyan; Liu, Tingting; Liang, Ying; Lv, Meiling; Cao, Jiashu

    2017-02-01

    Two homologous genes, Brassica campestris Male Fertility 23a (BcMF23a) and Brassica campestris Male Fertility 23b (BcMF23b), encoding putative pectin methylesterases (PMEs) were isolated from Brassica campestris ssp. chinensis (syn. Brassica rapa ssp. chinensis). These two genes sharing high sequence identity with each other were highly expressed in the fertile flower buds but silenced in the sterile ones of genic male sterile line system ('Bcajh97-01A/B'). Results of RT-PCR and in situ hybridization suggested that BcMF23a and BcMF23b were pollen-expressed genes, whose transcripts were first detected at the binucleate pollen and maintained throughout to the mature pollen grains. Western blot indicated that both of the putative BcMF23a and BcMF23b proteins are approximately 40 kDa, which exhibited extracellular localization revealed by transient expression analysis in the onion epidermal cells. The promoter of BcMF23a was active specifically in pollen during the late pollen developmental stages, while, in addition to the pollen, BcMF23b promoter drove an extra gene expression in the valve margins, abscission layer at the base of the first true leaves, taproot and lateral roots in seedlings.

  7. Global transcriptome analysis of peripheral blood identifies the most significantly down-regulated genes associated with metabolism regulation in Klinefelter syndrome.

    Science.gov (United States)

    Huang, Jin; Zhang, Liang; Deng, Hua; Chang, Liang; Liu, Qinli; Liu, Ping

    2015-01-01

    The molecular pathogenesis of Klinefelter Syndrome (KS) is not fully understood. The aim of this study was to determine differences in gene expression patterns between KS patients and control individuals to help identify disease-related genes and biological pathways. Gene expression profiles of five KS patients and five healthy men were determined by microarray; 21 differentially expressed genes with a fold-change >1.5 and q-value <0.05 were identified between the groups. Genes associated with metabolism regulation and encoding liver fatty acid-binding protein (FABP1), aldehyde dehydrogenase 1 family member L1 (ALDH1L1), and vitronectin (VTN) were the most-significantly down-regulated in KS, as confirmed by quantitative reverse transcription PCR. Notably, none of these differentially expressed genes are normally found on the X chromosome. Thus, our results indicate that aberrant metabolism is involved in the pathogenesis of KS. Further elucidation of the how aberrant expression of metabolism-related genes affect the pathogenesis of KS may lead to the development of novel preventative and therapeutic strategies.

  8. Integration of regulatory signals through involvement of multiple global regulators: control of the Escherichia coli gltBDF operon by Lrp, IHF, Crp, and ArgR

    Directory of Open Access Journals (Sweden)

    Mishra Pankaj K

    2007-01-01

    Full Text Available Abstract Background The glutamate synthase operon (gltBDF contributes to one of the two main pathways of ammonia assimilation in Escherichia coli. Of the seven most-global regulators, together affecting expression of about half of all E. coli genes, two were previously shown to exert direct, positive control on gltBDF transcription: Lrp and IHF. The involvement of Lrp is unusual in two respects: first, it is insensitive to the usual coregulator leucine, and second, Lrp binds more than 150 bp upstream of the transcription starting point. There was indirect evidence for involvement of a third global regulator, Crp. Given the physiological importance of gltBDF, and the potential opportunity to learn about integration of global regulatory signals, a combination of in vivo and in vitro approaches was used to investigate the involvement of additional regulatory proteins, and to determine their relative binding positions and potential interactions with one another and with RNA polymerase (RNAP. Results Crp and a more local regulator, ArgR, directly control gltBDF transcription, both acting negatively. Crp-cAMP binds a sequence centered at -65.5 relative to the transcript start. Mutation of conserved nucleotides in the Crp binding site abolishes the Crp-dependent repression. ArgR also binds to the gltBDF promoter region, upstream of the Lrp binding sites, and decreases transcription. RNAP only yields a defined DNAse I footprint under two tested conditions: in the presence of both Lrp and IHF, or in the presence of Crp-cAMP. The DNAse I footprint of RNAP in the presence of Lrp and IHF is altered by ArgR. Conclusion The involvement of nearly half of E. coli's most-global regulatory proteins in the control of gltBDF transcription is striking, but seems consistent with the central metabolic role of this operon. Determining the mechanisms of activation and repression for gltBDF was beyond the scope of this study. However the results are consistent with a

  9. An index-based framework for assessing patterns and trends in river fragmentation and flow regulation by global dams at multiple scales

    Science.gov (United States)

    Grill, Günther; Lehner, Bernhard; Lumsdon, Alexander E.; MacDonald, Graham K.; Zarfl, Christiane; Reidy Liermann, Catherine

    2015-01-01

    The global number of dam constructions has increased dramatically over the past six decades and is forecast to continue to rise, particularly in less industrialized regions. Identifying development pathways that can deliver the benefits of new infrastructure while also maintaining healthy and productive river systems is a great challenge that requires understanding the multifaceted impacts of dams at a range of scales. New approaches and advanced methodologies are needed to improve predictions of how future dam construction will affect biodiversity, ecosystem functioning, and fluvial geomorphology worldwide, helping to frame a global strategy to achieve sustainable dam development. Here, we respond to this need by applying a graph-based river routing model to simultaneously assess flow regulation and fragmentation by dams at multiple scales using data at high spatial resolution. We calculated the cumulative impact of a set of 6374 large existing dams and 3377 planned or proposed dams on river connectivity and river flow at basin and subbasin scales by fusing two novel indicators to create a holistic dam impact matrix for the period 1930-2030. Static network descriptors such as basin area or channel length are of limited use in hierarchically nested and dynamic river systems, so we developed the river fragmentation index and the river regulation index, which are based on river volume. These indicators are less sensitive to the effects of network configuration, offering increased comparability among studies with disparate hydrographies as well as across scales. Our results indicate that, on a global basis, 48% of river volume is moderately to severely impacted by either flow regulation, fragmentation, or both. Assuming completion of all dams planned and under construction in our future scenario, this number would nearly double to 93%, largely due to major dam construction in the Amazon Basin. We provide evidence for the importance of considering small to medium sized

  10. Accounting for global-mean warming and scaling uncertainties in climate change impact studies: application to a regulated lake system

    Directory of Open Access Journals (Sweden)

    2007-01-01

    Full Text Available A probabilistic assessment of climate change and related impacts should consider a large range of potential future climate scenarios. State-of-the-art climate models, especially coupled atmosphere-ocean general circulation models and Regional Climate Models (RCMs cannot, however, be used to simulate such a large number of scenarios. This paper presents a methodology for obtaining future climate scenarios through a simple scaling methodology. The projections of several key meteorological variables obtained from a few regional climate model runs are scaled, based on different global-mean warming projections drawn in a probability distribution of future global-mean warming. The resulting climate change scenarios are used to drive a hydrological and a water management model to analyse the potential climate change impacts on a water resources system. This methodology enables a joint quantification of the climate change impact uncertainty induced by the global-mean warming scenarios and the regional climate response. It is applied to a case study in Switzerland, a water resources system formed by three interconnected lakes located in the Jura Mountains. The system behaviour is simulated for a control period (1961–1990 and a future period (2070–2099. The potential climate change impacts are assessed through a set of impact indices related to different fields of interest (hydrology, agriculture and ecology. The results obtained show that future climate conditions will have a significant influence on the performance of the system and that the uncertainty induced by the inter-RCM variability will contribute to much of the uncertainty of the prediction of the total impact. These CSRs cover the area considered in the 2001–2004 EU funded project SWURVE.

  11. A generalised PID-type control scheme with simple tuning for the global regulation of robot manipulators with constrained inputs

    Science.gov (United States)

    Mendoza, Marco; Zavala-Río, Arturo; Santibáñez, Víctor; Reyes, Fernando

    2015-10-01

    In this paper, a globally stabilising PID-type control scheme with a generalised saturating structure for robot manipulators under input constraints is proposed. It gives rise to various families of bounded PID-type controllers whose implementation is released from the exact knowledge of the system parameters and model structure. Compared to previous approaches of the kind, the proposed scheme is not only characterised by its generalised structure but also by its very simple tuning criterion, the simplest hitherto obtained in the considered analytical framework. Experimental results on a 3-degree-of-freedom direct-drive manipulator corroborate the efficiency of the proposed approach.

  12. Mutation Analysis of a Gene Involved in Chemotaxis in Xanthomonas campestris pv.Campestris%十字花科黑腐病菌中一个与趋化性相关基因的突变分析

    Institute of Scientific and Technical Information of China (English)

    丘献娟; 吴柳; 陈正培; 陆光涛

    2015-01-01

    十字花科作物黑腐病,又称为野油菜黄单胞菌野油菜变种(Xanthomonas campestris pv.campestris,简称Xcc),该细菌是引起十字花科作物等植物发生黑腐病的病原菌,同时该细菌也是人们研究寄主与病原微生物相互作用的具体分子机理的模式菌之一.在Xcc 8004菌株基因组中,XC 2304编码的产物为一个趋化性蛋白.由于细菌的趋化性在病原学方面的意义是非常重要的,为评估XC 2304的功能,本研究利用pK18mobSacB对XC_2304进行缺失突变,获得缺失突变体DM2304.植株试验发现,突变体DM2304对寄主植物的致病力下降约30%,其互补菌株CDM2304的致病力基本恢复至野生型水平,这表明XC 2304与Xcc致病力有关.利用毛细管法检测DM2304对18种物质的趋化性,结果表明突变体对木糖、苯丙氨酸、精氨酸、蔗糖以及核糖的趋化性比野生型弱.运动性分析发现,DM2304在含有0.3%、0.6%琼脂的NYGA板的游动性稍微降低,表明XC 2304与游动性有关.而DM2304的胞外纤维素酶、胞外蛋白酶、胞外淀粉酶、EPS产量、HR与野生型菌株相比均没有明显差异.本研究为十字花科黑腐病菌中其它与趋化性相关基因提供实验思路,对病原菌如何趋利避害的机制的研究具有一定的意义.

  13. MarA, SoxS and Rob of Escherichia coli - Global regulators of multidrug resistance, virulence and stress response.

    Science.gov (United States)

    Duval, Valérie; Lister, Ida M

    2013-01-01

    Bacteria have a great capacity for adjusting their metabolism in response to environmental changes by linking extracellular stimuli to the regulation of genes by transcription factors. By working in a co-operative manner, transcription factors provide a rapid response to external threats, allowing the bacteria to survive. This review will focus on transcription factors MarA, SoxS and Rob in Escherichia coli, three members of the AraC family of proteins. These homologous proteins exemplify the ability to respond to multiple threats such as oxidative stress, drugs and toxic compounds, acidic pH, and host antimicrobial peptides. MarA, SoxS and Rob recognize similar DNA sequences in the promoter region of more than 40 regulatory target genes. As their regulons overlap, a finely tuned adaptive response allows E. coli to survive in the presence of different assaults in a co-ordinated manner. These regulators are well conserved amongst Enterobacteriaceae and due to their broad involvement in bacterial adaptation in the host, have recently been explored as targets to develop new anti-virulence agents. The regulators are also being examined for their roles in novel technologies such as biofuel production.

  14. Brucella melitensis global gene expression study provides novel information on growth phase-specific gene regulation with potential insights for understanding Brucella:host initial interactions

    Directory of Open Access Journals (Sweden)

    Garner Harold R

    2009-05-01

    Full Text Available Abstract Background Brucella spp. are the etiological agents of brucellosis, a zoonotic infectious disease that causes abortion in animals and chronic debilitating illness in humans. Natural Brucella infections occur primarily through an incompletely defined mechanism of adhesion to and penetration of mucosal epithelium. In this study, we characterized changes in genome-wide transcript abundance of the most and the least invasive growth phases of B. melitensis cultures to HeLa cells, as a preliminary approach for identifying candidate pathogen genes involved in invasion of epithelial cells. Results B. melitensis at the late logarithmic phase of growth are more invasive to HeLa cells than mid-logarithmic or stationary growth phases. Microarray analysis of B. melitensis gene expression identified 414 up- and 40 down-regulated genes in late-log growth phase (the most invasive culture compared to the stationary growth phase (the least invasive culture. As expected, the majority of up-regulated genes in late-log phase cultures were those associated with growth, including DNA replication, transcription, translation, intermediate metabolism, energy production and conversion, membrane transport, and biogenesis of the cell envelope and outer membrane; while the down-regulated genes were distributed among several functional categories. Conclusion This Brucella global expression profile study provides novel information on growth phase-specific gene expression. Further characterization of some genes found differentially expressed in the most invasive culture will likely bring new insights into the initial molecular interactions between Brucella and its host.

  15. Inactivation of the global regulator LaeA in Monascus ruber results in a species-dependent response in sporulation and secondary metabolism.

    Science.gov (United States)

    Liu, Qingpei; Cai, Li; Shao, Yanchun; Zhou, Youxiang; Li, Mu; Wang, Xiaohong; Chen, Fusheng

    2016-03-01

    The nuclear regulator LaeA has been proven to globally govern fungal development and secondary metabolism, but its function may be species-dependent, even though its amino acid sequences are well conserved in numerous fungi. Herein we identified the LaeA in Monascus ruber M7 (MrLaeA), and verified its role to mediate growth, sporulation and secondary metabolism. Results showed that the radial growth rate of the selected MrlaeA knock-out mutant (MrΔlaeA-22) was significantly faster than that of the parental strain M. ruber M7, and growth was accompanied by the formation of an abnormal colony phenotype with more abundant aerial hyphae. Interestingly, conidia production of the MrΔlaeA-22 strain was about thrice that of M. ruber M7, but ascospores were not observed in the MrΔlaeA-22 strain. Additionally, compared to M. ruber M7, MrΔlaeA-22 exhibited drastically reduced production of multiple secondary metabolites, especially those of the six well-known Monascus pigments and citrinin. Simultaneously, the selected MrlaeA complementation strain (MrΔlaeA::laeA-45) nearly recovered the capacity for sporulation and secondary metabolism observed in the parental strain. These results demonstrate that MrLaeA regulates not only secondary metabolism, but also asexual and sexual differentiation in M. ruber, but some of its regulation appears to differ from other fungi.

  16. Identification of Astrotactin2 as a Genetic Modifier That Regulates the Global Orientation of Mammalian Hair Follicles.

    Directory of Open Access Journals (Sweden)

    Hao Chang

    Full Text Available Planar cell polarity (PCP signaling controls the global orientation of surface structures, such as hairs and bristles, in both vertebrates and invertebrates. In Frizzled6(-/- (Fz6(-/- mice, hair follicle orientations on the head and back are nearly random at birth, but reorient during early postnatal development to eventually generate a nearly parallel anterior-to-posterior array. We report the identification of a naturally occurring exon 5 deletion in Astrotactin2 (Astn2 that acts as a recessive genetic modifier of the Fz6(-/- hair patterning phenotype. A genetically engineered Astn2 exon 5 deletion recapitulates the modifier phenotype. In Fz6(-/-;Astn2(ex5del/del mice, hair orientation on the back is subtly biased from posterior-to-anterior, leading to a 180-degree orientation reversal in mature mice. These experiments suggest that Astn2, an endosomal membrane protein, modulates PCP signaling.

  17. Arabidopsis plastid AMOS1/EGY1 integrates abscisic acid signaling to regulate global gene expression response to ammonium stress

    KAUST Repository

    Li, Baohai

    2012-10-12

    Ammonium (NH4 +) is a ubiquitous intermediate of nitrogen metabolism but is notorious for its toxic effects on most organisms. Extensive studies of the underlying mechanisms of NH4 + toxicity have been reported in plants, but it is poorly understood how plants acclimate to high levels of NH4 +. Here, we identified an Arabidopsis (Arabidopsis thaliana) mutant, ammonium overly sensitive1 (amos1), that displays severe chlorosis under NH4 + stress. Map-based cloning shows amos1 to carry a mutation in EGY1 (for ethylene-dependent, gravitropism-deficient, and yellow-green-like protein1), which encodes a plastid metalloprotease. Transcriptomic analysis reveals that among the genes activated in response to NH4 +, 90% are regulated dependent on AMOS1/ EGY1. Furthermore, 63% of AMOS1/EGY1-dependent NH4 +-activated genes contain an ACGTG motif in their promoter region, a core motif of abscisic acid (ABA)-responsive elements. Consistent with this, our physiological, pharmacological, transcriptomic, and genetic data show that ABA signaling is a critical, but not the sole, downstream component of the AMOS1/EGY1-dependent pathway that regulates the expression of NH4 +-responsive genes and maintains chloroplast functionality under NH4 + stress. Importantly, abi4 mutants defective in ABA-dependent and retrograde signaling, but not ABA-deficient mutants, mimic leaf NH4 + hypersensitivity of amos1. In summary, our findings suggest that an NH4 +-responsive plastid retrograde pathway, which depends on AMOS1/EGY1 function and integrates with ABA signaling, is required for the regulation of expression of the presence of high NH4 + levels. © 2012 American Society of Plant Biologists. All Rights Reserved.

  18. Transcriptomic analysis of Streptomyces clavuligerus ΔccaR::tsr: effects of the cephamycin C-clavulanic acid cluster regulator CcaR on global regulation.

    Science.gov (United States)

    Alvarez-Álvarez, R; Rodríguez-García, A; Santamarta, I; Pérez-Redondo, R; Prieto-Domínguez, A; Martínez-Burgo, Y; Liras, P

    2014-05-01

    Streptomyces clavuligerus ATCC 27064 and S. clavuligerus ΔccaR::tsr cultures were grown in asparagine-starch medium, and samples were taken in the exponential and stationary growth phases. Transcriptomic analysis showed that the expression of 186 genes was altered in the ccaR-deleted mutant. These genes belong to the cephamycin C gene cluster, clavulanic acid gene cluster, clavams, holomycin, differentiation, carbon, nitrogen, amino acids or phosphate metabolism and energy production. All the clavulanic acid biosynthesis genes showed Mc values in the order of -4.23. The blip gene-encoding a β-lactamase inhibitory protein was also controlled by the cephamycin C-clavulanic acid cluster regulator (Mc -2.54). The expression of the cephamycin C biosynthesis genes was greatly reduced in the mutant (Mc values up to -7.1), while the genes involved in putative β-lactam resistance were less affected (Mc average -0.88). Genes for holomycin biosynthesis were upregulated. In addition, the lack of clavulanic acid and cephamycin production negatively affected the expression of genes for the clavulanic acid precursor arginine and of miscellaneous genes involved in nitrogen metabolism (amtB, glnB, glnA3, glnA2, glnA1). The transcriptomic results were validated by quantative reverse transcription polymerase chain reaction and luciferase assay of luxAB-coupled promoters. Transcriptomic analysis of the homologous genes of S. coelicolor validated the results obtained for S. clavuligerus primary metabolism genes.

  19. The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum

    Directory of Open Access Journals (Sweden)

    Hüser Andrea T

    2006-02-01

    Full Text Available Abstract Background The knowledge about complete bacterial genome sequences opens the way to reconstruct the qualitative topology and global connectivity of transcriptional regulatory networks. Since iron is essential for a variety of cellular processes but also poses problems in biological systems due to its high toxicity, bacteria have evolved complex transcriptional regulatory networks to achieve an effective iron homeostasis. Here, we apply a combination of transcriptomics, bioinformatics, in vitro assays, and comparative genomics to decipher the regulatory network of the iron-dependent transcriptional regulator DtxR of Corynebacterium glutamicum. Results A deletion of the dtxR gene of C. glutamicum ATCC 13032 led to the mutant strain C. glutamicum IB2103 that was able to grow in minimal medium only under low-iron conditions. By performing genome-wide DNA microarray hybridizations, differentially expressed genes involved in iron metabolism of C. glutamicum were detected in the dtxR mutant. Bioinformatics analysis of the genome sequence identified a common 19-bp motif within the upstream region of 31 genes, whose differential expression in C. glutamicum IB2103 was verified by real-time reverse transcription PCR. Binding of a His-tagged DtxR protein to oligonucleotides containing the 19-bp motifs was demonstrated in vitro by DNA band shift assays. At least 64 genes encoding a variety of physiological functions in iron transport and utilization, in central carbohydrate metabolism and in transcriptional regulation are controlled directly by the DtxR protein. A comparison with the bioinformatically predicted networks of C. efficiens, C. diphtheriae and C. jeikeium identified evolutionary conserved elements of the DtxR network. Conclusion This work adds considerably to our currrent understanding of the transcriptional regulatory network of C. glutamicum genes that are controlled by DtxR. The DtxR protein has a major role in controlling the

  20. Engineering of global regulator cAMP receptor protein (CRP) in Escherichia coli for improved lycopene production.

    Science.gov (United States)

    Huang, Lei; Pu, Yue; Yang, Xiuliang; Zhu, Xiangcheng; Cai, Jin; Xu, Zhinan

    2015-04-10

    Transcriptional engineering has received significant attention for improving strains by modulating the behavior of transcription factors, which could be used to reprogram a series of gene transcriptions and enable multiple simultaneous modifications at the genomic level. In this study, engineering of the cAMP receptor protein (CRP) was explored with the aim of subtly balancing entire pathway networks and potentially improving lycopene production without significant genetic intervention in other pathways. Amino acid mutations were introduced to CRP by error-prone PCR, and three variants (mcrp26, mcrp159 and mcrp424) with increased lycopene productivity were screened. Combinations of three point mutations were then created via site-directed mutagenesis. The best mutant gene (mcrp26) was integrated into the genome of E. coli BW25113-BIE to replace the wild-type crp gene (MT-1), which resulted in a higher lycopene production (18.49mg/g DCW) compared to the original strain (WT). The mutant strain MT-1 was further investigated in a 10-L bench-top fermentor with a lycopene yield of 128mg/l at 20h, approximately 25% higher than WT. DNA microarray analyses showed that 396 genes (229 up-regulated and 167 down-regulated) were differentially expressed in the mutant MT-1 compared to WT. Finally, the introduction of the mutant crp gene (mcrp26) increased β-carotene production in E. coli. This is the first report of improving the phenotype for metabolite overproduction in E. coli using a CRP engineering strategy.

  1. Comparative Assessment of the Adverse Effect of Silver Nanoparticles to Vigna Radiata and Brassica Campestris Crop Plants.

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    Harajyoti Mazumdar

    2014-05-01

    Full Text Available Inspite of very wide application of different types of nanoparticles in different commercial fields including pharmaceutical and food industries, the toxic effects of these nanoparticles on living systems have not been clearly established. Increased applications of nanoparticles by human beings lead to accumulation of more and more nanoparticles in the environment which ultimately affect the ecosystem. The current study focused on phytotoxicity of silver nanoparticles to V.radiata and B.campestris crop plants. Effect on seedling growth by nanoparticles is comparatively more than ions solution during treatment period. The test plants exposed to nanoparticle shows that the average particle size was about 25.3 nm which was determined by X-Ray Diffractions spectrophotometer. In addition, result from Fourier Transform Infrared spectrometer reported no change in chemical composition on the basis of vibrations of functional group of molecules in treated root samples. However, Scanning Electron Microscope images revealed depositions of isolated small and spherical nanoparticles in root cells. The nanoparticles appeared to be either filling the epidermal crypt or adhering onto the root surface of test plants.

  2. Analysis of Hydroxy Fatty Acids from the Pollen of Brassica campestris L. var. oleifera DC. by UPLC-MS/MS

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    Nian-Yun Yang

    2013-01-01

    Full Text Available Ultraperformance liquid chromatography coupled with negative electrospray tandem mass spectrometry (UPLC-ESI-MS/MS was used to determine 7 hydroxy fatty acids in the pollen of Brassica campestris L. var. oleifera DC. All the investigated hydroxy fatty acids showed strong deprotonated molecular ions [M–H]−, which underwent two major fragment pathways of the allyl scission and the β-fission of the alcoholic hydroxyl group. By comparison of their molecular ions and abundant fragment ions with those of reference compounds, they were tentatively assigned as 15,16-dihydroxy-9Z,12Z-octadecadienoic acid (1, 10,11,12-trihydroxy-(7Z,14Z-heptadecadienoic acid (2, 7,15,16-trihydroxy-9Z,12Z-octadecadienoic acid (3, 15,16-dihydroxy-9Z,12Z-octadecadienoic acid (4, 15-hydroxy-6Z,9Z,12Z-octadecatrienoic acid (5, 15-hydroxy-9Z,12Z- octadecadienoic acid (6, and 15-hydroxy-12Z-octadecaenoic acid (7, respectively. Compounds 3, 5, and 7 are reported for the first time.

  3. Membrane topology of conserved components of the type III secretion system from the plant pathogen Xanthomonas campestris pv. vesicatoria.

    Science.gov (United States)

    Berger, Carolin; Robin, Guillaume P; Bonas, Ulla; Koebnik, Ralf

    2010-07-01

    Type III secretion (T3S) systems play key roles in the assembly of flagella and the translocation of bacterial effector proteins into eukaryotic host cells. Eleven proteins which are conserved among gram-negative plant and animal pathogenic bacteria have been proposed to build up the basal structure of the T3S system, which spans both inner and outer bacterial membranes. We studied six conserved proteins, termed Hrc, predicted to reside in the inner membrane of the plant pathogen Xanthomonas campestris pv. vesicatoria. The membrane topology of HrcD, HrcR, HrcS, HrcT, HrcU and HrcV was studied by translational fusions to a dual alkaline phosphatase-beta-galactosidase reporter protein. Two proteins, HrcU and HrcV, were found to have the same membrane topology as the Yersinia homologues YscU and YscV. For HrcR, the membrane topology differed from the model for the homologue from Yersinia, YscR. For our data on three other protein families, exemplified by HrcD, HrcS and HrcT, we derived the first topology models. Our results provide what is believed to be the first complete model of the inner membrane topology of any bacterial T3S system and will aid in elucidating the architecture of T3S systems by ultrastructural analysis.

  4. Output-Feedback Adaptive SP-SD-Type Control with an Extended Continuous Adaptation Algorithm for the Global Regulation of Robot Manipulators with Bounded Inputs

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    Daniela J. López-Araujo

    2013-01-01

    Full Text Available In this work, an output‐feedback adaptive SP‐SD‐type control scheme for the global position stabilization of robot manipulators with bounded inputs is proposed. Compared with the output‐feedback adaptive approaches previously developed in a bounded‐ input context, the proposed velocity‐free feedback controller guarantees the adaptive regulation objective globally (i.e. for any initial condition, avoiding discontinuities throughout the scheme, preventing the inputs from reaching their natural saturation bounds and imposing no saturation-avoidance restrictions on the choice of the P and D control gains. Moreover, through its extended structure, the adaptation algorithm may be configured to evolve either in parallel (independently or interconnected to the velocity estimation (motion dissipation auxiliary dynamics, giving an additional degree of design flexibility. Furthermore, the proposed scheme is not restricted to the use of a specific saturation function to achieve the required boundedness, but may involve any one within a set of smooth and non‐smooth (Lipschitz‐continuous bounded passive functions that include the hyperbolic tangent and the conventional saturation as particular cases. Experimental results on a 3‐ degree‐of‐freedom manipulator corroborate the efficiency of the proposed scheme.

  5. Testicular Dnmt3 expression and global DNA methylation are down-regulated by gonadotropin releasing hormones in the ricefield eel Monopterus albus

    Science.gov (United States)

    Zhang, Yize; Sun, Xin; Zhang, Lihong; Zhang, Weimin

    2017-01-01

    In vertebrates, DNA methyltransferase 3 (Dnmt3) homologues are responsible for de novo DNA methylation and play important roles in germ cell development. In the present study, four dnmt3 genes, dnmt3aa, dnmt3ab, dnmt3ba and dnmt3bb.1, were identified in ricefield eels. Real-time quantitative PCR analysis showed that all four dnmt3 mRNAs were detected broadly in tissues examined, with testicular expression at relatively high levels. In the testis, immunostaining for all four Dnmt3 forms was mainly localized to spermatocytes, which also contained highly methylated DNA. All three forms of Gonadotropin-releasing hormone (Gnrh) in the ricefield eel were shown to decrease the expression of dnmt3 genes in the in vitro incubated testicular fragments through cAMP and IP3/Ca2+ pathways. Moreover, in vivo treatment of male fish with three forms of Gnrh decreased significantly the testicular Dnmt3 expression at both mRNA and protein levels, and the global DNA methylation levels. These results suggest that the expression of Dnmt3 and global DNA methylation in the testis of ricefield eels are potentially down-regulated by Gnrh, and reveal a novel regulatory mechanism of testicular Dnmt3 expression in vertebrates. PMID:28225069

  6. Importance of the global regulators Agr and SaeRS in the pathogenesis of CA-MRSA USA300 infection.

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    Christopher P Montgomery

    Full Text Available CA-MRSA infection, driven by the emergence of the USA300 genetic background, has become epidemic in the United States. USA300 isolates are hypervirulent, compared with other CA- and HA-MRSA strains, in experimental models of necrotizing pneumonia and skin infection. Interestingly, USA300 isolates also have increased expression of core genomic global regulatory and virulence factor genes, including agr and saeRS. To test the hypothesis that agr and saeRS promote the observed hypervirulent phenotype of USA300, isogenic deletion mutants of each were constructed in USA300. The effects of gene deletion on expression and protein abundance of selected downstream virulence genes were assessed by semiquantitative real-time reverse-transcriptase PCR (qRT-PCR and western blot, respectively. The effects of gene deletion were also assessed in mouse models of necrotizing pneumonia and skin infection. Deletion of saeRS, and, to a lesser extent, agr, resulted in attenuated expression of the genes encoding α-hemolysin (hla and the Panton-Valentine leukocidin (lukSF-PV. Despite the differences in hla transcription, the toxin was undetectable in culture supernatants of either of the deletion mutants. Deletion of agr, but not saeRS, markedly increased the expression of the gene encoding protein A (spa, which correlated with increased protein abundance. Each deletion mutant demonstrated significant attenuation of virulence, compared with wild-type USA300, in mouse models of necrotizing pneumonia and skin infection. We conclude that agr and saeRS each independently contribute to the remarkable virulence of USA300, likely by means of their effects on expression of secreted toxins.

  7. The Arabidopsis Mediator CDK8 module genes CCT (MED12) and GCT (MED13) are global regulators of developmental phase transitions.

    Science.gov (United States)

    Gillmor, C Stewart; Silva-Ortega, Claudia O; Willmann, Matthew R; Buendía-Monreal, Manuel; Poethig, R Scott

    2014-12-01

    Temporal coordination of developmental programs is necessary for normal ontogeny, but the mechanism by which this is accomplished is still poorly understood. We have previously shown that two components of the Mediator CDK8 module encoded by CENTER CITY (CCT; Arabidopsis MED12) and GRAND CENTRAL (GCT; Arabidopsis MED13) are required for timing of pattern formation during embryogenesis. A morphological, molecular and genomic analysis of the post-embryonic phenotype of gct and cct mutants demonstrated that these genes also promote at least three subsequent developmental transitions: germination, vegetative phase change, and flowering. Genetic and molecular analyses indicate that GCT and CCT operate in parallel to gibberellic acid, a phytohormone known to regulate these same three transitions. We demonstrate that the delay in vegetative phase change in gct and cct is largely due to overexpression of miR156, and that the delay in flowering is due in part to upregulation of FLC. Thus, GCT and CCT coordinate vegetative and floral transitions by repressing the repressors miR156 and FLC. Our results suggest that MED12 and MED13 act as global regulators of developmental timing by fine-tuning the expression of temporal regulatory genes.

  8. A direct link between the global regulator PhoP and the Csr regulon in Y. pseudotuberculosis through the small regulatory RNA CsrC.

    Science.gov (United States)

    Nuss, Aaron M; Schuster, Franziska; Kathrin Heroven, Ann; Heine, Wiebke; Pisano, Fabio; Dersch, Petra

    2014-01-01

    In this study we investigated the influence of the global response regulator PhoP on the complex regulatory cascade controlling expression of early stage virulence genes of Yersinia pseudotuberculosis via the virulence regulator RovA. Our analysis revealed the following novel features: (1) PhoP activates expression of the CsrC RNA in Y. pseudotuberculosis, leading to activation of RovA synthesis through the CsrABC-RovM cascade, (2) activation of csrC transcription is direct and PhoP is shown to bind to two separate PhoP box-like sites, (3) PhoP-mediated activation results in transcription from two different promoters closely downstream of the PhoP binding sites, leading to two distinct CsrC RNAs, and (4) the stability of the CsrC RNAs differs significantly between the Y. pseudotuberculosis strains YPIII and IP32953 due to a 20 nucleotides insertion in CsrC(IP32953), which renders the transcript more susceptible to degradation. In summary, our study showed that PhoP-mediated influence on the regulatory cascade controlling the Csr system and RovA in Y. pseudotuberculosis varies within the species, suggesting that the Csr system is a focal point to readjust and adapt the genus to different hosts and reservoirs.

  9. SUMO: regulating the regulator

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    Bossis Guillaume

    2006-06-01

    Full Text Available Abstract Post-translational modifiers of the SUMO (Small Ubiquitin-related Modifier family have emerged as key regulators of protein function and fate. While the past few years have seen an enormous increase in knowledge on SUMO enzymes, substrates, and consequences of modification, regulation of SUMO conjugation is far from being understood. This brief review will provide an overview on recent advances concerning (i the interplay between sumoylation and other post-translational modifications at the level of individual targets and (ii global regulation of SUMO conjugation and deconjugation.

  10. 十字花科黑腐病菌一个新的Ⅲ型效应物XC3176的鉴定%Identification of a new type Ⅲ effector XC3176 in Xanthomonas campestris pv.campestris

    Institute of Scientific and Technical Information of China (English)

    杨丽超; 苏华; 杨凤; 蹇华哗; 周敏; 姜伟; 姜伯乐

    2015-01-01

    [目的]在十字花科黑腐病菌(Xanthomonas campestris pv.campestris,Xcc)的致病因子中,Ⅲ型分泌系统(Type Ⅲ Secretion System,T3 SS)是至关重要的致病系统,Ⅲ型效应物通过Ⅲ型分泌系统直接转运到寄主植物细胞内.本研究通过效应物水平转移的特征获得候选基因,旨在鉴定一个新的依赖于Ⅲ型分泌的效应物.[方法]以缺失了N-端58个氨基酸的AvrBs1作为报告系统构建效应物鉴定报告质粒pLJB3176,导入△avrBs1和△hrcV,通过检测报告菌株在辣椒ECW-10R上的过敏反应来鉴定XC3176是否为Ⅲ型效应物.构建XC3176融合GUS报告质粒pLGUS3176,导入野生菌株Xcc 8004、△hrpG和△hrpX,通过测定菌株GUS活性检测hrpG、hrpX对XC3176的调控作用.构建XC3176缺失突变体和互补菌株,通过剪叶法接种检测XC3176对Xcc 8004致病性的影响.[结果]XC3176融合AvrBs1报告菌株在非寄主辣椒ECW-10R上能引发过敏反应,GUS活性检测显示△hrpG/pLGUS3176、△hrpX/pLGUS3176比8004/pLGUS3176的GUS酶活显著降低,致病性检测显示突变体△3176与野生型Xcc 8004相比在寄主满身红萝卜上的病斑长度有显著减少,互补菌株C3176的病斑长度能补回到野生型水平.[结论]XC3176是依赖于hrcV分泌的Ⅲ型效应物,hrpG、hrpX正调控XC3176,XC3176与Xcc致病相关.

  11. Role of nitrification inhibitor DMPP( 3,4-dimethylpyrazole phosphate) in NO3--N accumulation in greengrocery( Brassica campestris L. Ssp. Chinensis )and vegetable soil

    Institute of Scientific and Technical Information of China (English)

    XU Chao; WU Liang-huan; JU Xiao-tang; ZHANG Fu-suo

    2005-01-01

    The influence of nitrification inhibitor(NI) 3,4-dimethylpyrazole phosphate (DMPP) on nitrate accumulation in greengrocery( Brassica campestris L. ssp. chinensis) and vegetable soil at surface layer were investigated in field experiments in 2002 and 2003.Results showed that NI DMPP took no significant effect on yields of edible parts of greengrocery, but it could significantly decrease NO3- -N concentration in greengrccery and in vegetable soil at surface layer. In addition, NI DMPP could reduce the NO3--N concentration during the prophase stage of storage.

  12. Role of nitrification inhibitor DMPP (3, 4-dimethylpyrazole phosphate) in NO(3-)-N accumulation in greengrocery( Brassica campestris L. ssp. chinensis) and vegetable soil.

    Science.gov (United States)

    Xu, Chao; Wu, Liang-huan; Ju, Xiao-tang; Zhang, Fu-suo

    2005-01-01

    The influence of nitrification inhibitor (NI) 3, 4-dimethylpyrazole phosphate (DMPP) on nitrate accumulation in greengrocery (Brassica campestris L. ssp. chinensis) and vegetable soil at surface layer were investigated in field experiments in 2002 and 2003. Results showed that NI DMPP took no significant effect on yields of edible parts of greengrocery, but it could significantly decrease NO(3-)-N concentration in greengrocery and in vegetable soil at surface layer. In addition, NI DMPP could reduce the NO(3-)-N concentration during the prophase stage of storage.

  13. Ensayo del efecto diurético de los extractos acuosos de Amaranthus muricatus (Moquin) Gill. Ex Hicken, Bauhinia candicans Benth. y Smilax campestris Griseb.

    OpenAIRE

    2000-01-01

    Los extractos acuosos de Amaranthus muricatus (Amarantaceae), Smilax campestris (Liliaceae) y Bauhinia candicans (Leguminosae) fueron ensayados con relación a su actividad diurética en ratas. La evaluación farmacológica revela que la administración oral de los extractos de las especies citadas a dosis de 250,500 y 1000 mg/kg de peso no producen un aumento significativo en el volumen de orina excretado, por lo que el uso tradicional como diurético de las tres especies estudiadas no pudo ser de...

  14. Development of a molecular method for detection and identification of Xanthomonas campestris pv. viticola Desenvolvimento de um método molecular para detecção e identificação de Xanthomonas campestris pv. viticola

    Directory of Open Access Journals (Sweden)

    Loiselene Carvalho da Trindade

    2007-03-01

    Full Text Available In order to develop a molecular method for detection and identification of Xanthomonas campestris pv. viticola (Xcv the causal agent of grapevine bacterial canker, primers were designed based on the partial sequence of the hrpB gene. Primer pairs Xcv1F/Xcv3R and RST2/Xcv3R, which amplified 243- and 340-bp fragments, respectively, were tested for specificity and sensitivity in detecting DNA from Xcv. Amplification was positive with DNA from 44 Xcv strains and with DNA from four strains of X. campestris pv. mangiferaeindicae and five strains of X. axonopodis pv. passiflorae, with both primer pairs. However, the enzymatic digestion of PCR products could differentiate Xcv strains from the others. None of the primer pairs amplified DNA from grapevine, from 20 strains of nonpathogenic bacteria from grape leaves and 10 strains from six representative genera of plant pathogenic bacteria. Sensitivity of primers Xcv1F/Xcv3R and RST2/Xcv3R was 10 pg and 1 pg of purified Xcv DNA, respectively. Detection limit of primers RST2/Xcv3R was 10(4 CFU/ml, but this limit could be lowered to 10² CFU/ml with a second round of amplification using the internal primer Xcv1F. Presence of Xcv in tissues of grapevine petioles previously inoculated with Xcv could not be detected by PCR using macerated extract added directly in the reaction. However, amplification was positive with the introduction of an agar plating step prior to PCR. Xcv could be detected in 1 µl of the plate wash and from a cell suspension obtained from a single colony. Bacterium identity was confirmed by RFLP analysis of the RST2/Xcv3R amplification products digested with Hae III.Com o objetivo de desenvolver um método molecular para detecção e identificação de Xanthomonas campestris pv. viticola (Xcv, agente causal do cancro bacteriano da videira, oligonucleotídeos (primers foram desenhados com base na seqüência parcial do gene hrpB. As combinações de primers Xcv1F/Xcv3R e RST2/Xcv3R que

  15. Characterization of the TrmB-like protein, PF0124, a TGM-recognizing global transcriptional regulator of the hyperthermophilic archaeon Pyrococcus furiosus.

    Science.gov (United States)

    Lee, Sung-Jae; Surma, Melanie; Seitz, Sabine; Hausner, Winfried; Thomm, Michael; Boos, Winfried

    2007-07-01

    The characterization of the transcriptional regulator TrmBL1 of the hyperthermophilic archaeon Pyrococcus furiosus, homologous to TrmB (transcriptional regulator of the maltose system), was studied. The genome of P. furiosus contains three TrmB paralogues. One of the TrmB-like proteins (TrmBL), PF0124 (TrmBL1), was analysed in more detail. It regulated the expression of the genes encoding enzymes of the glycolytic pathway as well as the maltodextrin (MD) ABC transporter. By molecular sieve chromatography, purified TrmBL1 behaved at ambient temperature as a tetramer of 148.8 kDa. In the presence of 1 mM maltotriose or 5 mM maltose TrmBL1 formed octamers. As shown by electrophoretic mobility shift assay (EMSA) TrmBL1 was found to bind the MD (maltodextrin ABC transport genes) promoter DNA with sixfold higher binding affinity (K(d) 0.2 microM) than to the trehalose/maltose ABC transporter (TM) promoter (K(d) 1.2 microM). Maltotriose and maltose interfered in these assays indicating inducer function. In vitro transcription assays using purified transcription components corroborated the data obtained with EMSA and showed inhibition of transcription of the MD promoter by TrmBL1. Recently, van de Werken et al. (FEMS Microbiol Lett 2006; 260: 69-76) identified TGM, a conserved sequence (Thermococcales-Glycolytic-Motif) upstream of genes encoding glycolytic enzymes and the MD ABC transporter. The position of TGM is invariably located downstream of the BRE-TATA box and overlapping the transcription start site on each promoter. By footprint analysis TrmBL1 was found to recognize the TGM sequence in several TGM-containing promoter sequences. We identified the recognition helix in TrmBL1 revealing tyrosine (Y49) to be essential for target DNA binding. However, the TGM motif was not essential for TrmBL1 binding. We conclude that TrmBL1 is a global sugar-sensing transcriptional regulator controlling the genes of transport systems and of sugar-metabolizing enzymes.

  16. Genome-wide analysis of the role of GlnR in Streptomyces venezuelae provides new insights into global nitrogen regulation in actinomycetes

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    Bibb Mervyn J

    2011-04-01

    Full Text Available Abstract Background GlnR is an atypical response regulator found in actinomycetes that modulates the transcription of genes in response to changes in nitrogen availability. We applied a global in vivo approach to identify the GlnR regulon of Streptomyces venezuelae, which, unlike many actinomycetes, grows in a diffuse manner that is suitable for physiological studies. Conditions were defined that facilitated analysis of GlnR-dependent induction of gene expression in response to rapid nitrogen starvation. Microarray analysis identified global transcriptional differences between glnR+ and glnR mutant strains under varying nitrogen conditions. To differentiate between direct and indirect regulatory effects of GlnR, chromatin immuno-precipitation (ChIP using antibodies specific to a FLAG-tagged GlnR protein, coupled with microarray analysis (ChIP-chip, was used to identify GlnR binding sites throughout the S. venezuelae genome. Results GlnR bound to its target sites in both transcriptionally active and apparently inactive forms. Thirty-six GlnR binding sites were identified by ChIP-chip analysis allowing derivation of a consensus GlnR-binding site for S. venezuelae. GlnR-binding regions were associated with genes involved in primary nitrogen metabolism, secondary metabolism, the synthesis of catabolic enzymes and a number of transport-related functions. Conclusions The GlnR regulon of S. venezuelae is extensive and impacts on many facets of the organism's biology. GlnR can apparently bind to its target sites in both transcriptionally active and inactive forms.

  17. Alelopatia de Salacia campestris Walp. sobre a germinação e crescimento inicial de alface e tomate

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    F. S. Santana

    2014-11-01

    Full Text Available Muitos metabólitos sintetizados pelas plantas e liberados no ambiente, afetam o desenvolvimento de outras espécies vegetais, afetando principalmente a germinação e o crescimento inicial das plântulas, fenômeno este chamado de alelopatia. Em vista disso o trabalho teve como objetivo investigar os efeitos alelopáticos do extrato etanólico do caule de Salacia campestris Walp. na germinação e crescimento inicial de alface e tomate. O extrato foi ensaiado nas concentrações 0, 250, 500 e 1000 mg/L. Foram avaliados a porcentagem de germinação (%G, índice de velocidade de germinação (IVG, comprimento da radícula (CR e hipocótilo (CH. O delineamento utilizado foi inteiramente casualizado, com quatro repetições. Os dados obtidos foram submetidos à análise de variância, sendo as médias comparadas pelo teste Scott Knott ao nível de 5% de probabilidade. O extrato promoveu estímulo médio no índice de velocidade de germinação de 60 e 12%, para alface e tomate, respectivamente. Nenhuma diferença significativa foi encontrada no crescimento radicular e do hipocótilo de plântulas de alface. Em plântulas de tomate observou-se decréscimo médio de 20,5% no comprimento do hipocótilo. Assim, a espécie em estudo apresenta potencial alelopatico evidenciado pelo aumento do IVG no alface, e redução das plántulas de tomate, porém novos estudos são necessários.

  18. The Xanthomonas campestris pv. vesicatoria Type-3 Effector XopB Inhibits Plant Defence Responses by Interfering with ROS Production.

    Directory of Open Access Journals (Sweden)

    Johannes Peter Roman Priller

    Full Text Available The bacterial pathogen Xanthomonas campestris pv. vesicatoria 85-10 (Xcv translocates about 30 type-3 effector proteins (T3Es into pepper plants (Capsicum annuum to suppress plant immune responses. Among them is XopB which interferes with PTI, ETI and sugar-mediated defence responses, but the underlying molecular mechanisms and direct targets are unknown so far. Here, we examined the XopB-mediated suppression of plant defence responses in more detail. Infection of susceptible pepper plants with Xcv lacking xopB resulted in delayed symptom development compared to Xcv wild type infection concomitant with an increased formation of salicylic acid (SA and expression of pathogenesis-related (PR genes. Expression of xopB in Arabidopsis thaliana promoted the growth of the virulent Pseudomonas syringae pv. tomato (Pst DC3000 strain. This was paralleled by a decreased SA-pool and a lower induction of SA-dependent PR gene expression. The expression pattern of early flg22-responsive marker genes indicated that MAPK signalling was not altered in the presence of XopB. However, XopB inhibited the flg22-triggered burst of reactive oxygen species (ROS. Consequently, the transcript accumulation of AtOXI1, a ROS-dependent marker gene, was reduced in xopB-expressing Arabidopsis plants as well as callose deposition. The lower ROS production correlated with a low level of basal and flg22-triggered expression of apoplastic peroxidases and the NADPH oxidase RBOHD. Conversely, deletion of xopB in Xcv caused a higher production of ROS in leaves of susceptible pepper plants. Together our results demonstrate that XopB modulates ROS responses and might thereby compromise plant defence.

  19. The Borrelia burgdorferi RelA/SpoT Homolog and Stringent Response Regulate Survival in the Tick Vector and Global Gene Expression during Starvation.

    Directory of Open Access Journals (Sweden)

    Dan Drecktrah

    2015-09-01

    Full Text Available As the Lyme disease bacterium Borrelia burgdorferi traverses its enzootic cycle, alternating between a tick vector and a vertebrate host, the spirochete must adapt and persist in the tick midgut under prolonged nutrient stress between blood meals. In this study, we examined the role of the stringent response in tick persistence and in regulation of gene expression during nutrient limitation. Nutritionally starving B. burgdorferi in vitro increased the levels of guanosine tetraphosphate (ppGpp and guanosine pentaphosphate (pppGpp, collectively referred to as (pppGpp, products of the bifunctional synthetase/hydrolase RelBbu (RelA/SpoT homolog. Conversely, returning B. burgdorferi to a nutrient-rich medium decreased (pppGpp levels. B. burgdorferi survival in ticks between the larval and nymph blood meals, and during starvation in vitro, was dependent on RelBbu. Furthermore, normal morphological conversion from a flat-wave shape to a condensed round body (RB form during starvation was dependent on RelBbu; relBbu mutants more frequently formed RBs, but their membranes were compromised. By differential RNA sequencing analyses, we found that RelBbu regulates an extensive transcriptome, both dependent and independent of nutrient stress. The RelBbu regulon includes the glp operon, which is important for glycerol utilization and persistence in the tick, virulence factors and the late phage operon of the 32-kb circular plasmid (cp32 family. In summary, our data suggest that RelBbu globally modulates transcription in response to nutrient stress by increasing (pppGpp levels to facilitate B. burgdorferi persistence in the tick.

  20. Post-translational serine/threonine phosphorylation and lysine acetylation: a novel regulatory aspect of the global nitrogen response regulator GlnR in S. coelicolor M145.

    Directory of Open Access Journals (Sweden)

    Rafat Amin

    2016-08-01

    Full Text Available Soil-dwelling Streptomyces bacteria such as S. coelicolor have to constantly adapt to the nitrogen (N availability in their habitat. Thus, strict transcriptional and post-translational control of the N-assimilation is fundamental for survival of this species. GlnR is a global response regulator that controls transcription of the genes related to the N-assimilation in S. coelicolor and other members of the Actinomycetales. GlnR represents an atypical orphan response regulator that is not activated by the phosphorylation of the conserved aspartate residue (Asp 50. We have applied transcriptional analysis, LC-MS/MS analysis and electrophoretic mobility shift assays (EMSAs to understand the regulation of GlnR in S. coelicolor M145. The expression of glnR and GlnR-target genes was revisited under four different N-defined conditions and a complex N-rich condition. Although, the expression of selected GlnR-target genes was strongly responsive to changing N-concentrations, the glnR expression itself was independent of the N-availability. Using LC-MS/MSanalysis we demonstrated that GlnR was post-translationally modified. The post-translational modifications of GlnR comprise phosphorylation of the serine/threonine residues and acetylation of lysine residues. In the complex N-rich medium GlnR was phosphorylated on six serine/ threonine residues and acetylated on one lysine residue. Under defined N-excess conditions only two phosphorylated residues were detected whereas under defined N-limiting conditions no phosphorylation was observed. GlnR phosphorylation is thus clearly correlated with N-rich conditions. Furthermore, GlnR was acetylated on four lysine residues independently of the N-concentration in the defined media and on only one lysine residue in the complex N-rich medium. Using EMSAs we demonstrated that phosphorylation inhibited the binding of GlnR to its targets genes, whereas acetylation had little influence on the formation of GlnR-DNA complex

  1. Regulation of semiochemicals - Global aspects

    NARCIS (Netherlands)

    Weatherston, I.; Minks, A.K.

    1995-01-01

    A general awareness of environmental concerns, an increasing chemophobic populace and the reregistration of pesticides, both in the United States and in the European Community, with the concomitant loss of many pest control chemicals through cancellation of their registrations has provided an impetu

  2. Influence of Applying Pig Manure on Arsenic Content of Soil and Brassica campestris%施用猪粪对土壤和菜心砷含量的影响

    Institute of Scientific and Technical Information of China (English)

    彭来真; 刘琳琳; 吕清瑶; 李延

    2011-01-01

    采用盆栽试验的方法,研究施用猪粪对土壤和菜心砷含量的影响.结果表明,随猪粪施用量的增加,土壤全砷、有效态砷和菜心砷含量均提高,且均与猪粪施用量呈极显著的正相关.施用猪粪的同一处理相比较,第2茬土壤全砷、有效态砷和菜心砷含量均高于第1茬.相关分析表明,施用猪粪导致土壤有效态砷含量提高是菜心砷含量增加的主要原因,土壤有效态砷含量可以作为衡量猪粪安全施用的指标.%Pot experiment was conducted to study the influence of applying pig manure on arsenic content of soil and Brassica campestris. The results showed that the content of total, available arsenic in soil and in Brassica campestris increased with pig manure dose raised from 5 g/kg to 60 g/kg. There existed positively significant correlation between the content of total, available arsenic in soil, arsenic in Brassica campestris and pig manure dose. The content of total, available arsenic in soil and in Brassica campestris of second harvest were higher than those of the previous harvest. Statistics analysis showed the uptake coefficient of extractable arsenic content in soil was higher than that of soil total arsenic content, indicating that the increasing of extractable arsenic content in soil coursed by application of pig dung made the increasing of the arsenic content in Brassica campestris. Soil extractable arsenic content could be used as safety index of pig manure application.

  3. Global gene expression analysis and regulation of the principal genes expressed in bovine placenta in relation to the transcription factor AP-2 family

    Directory of Open Access Journals (Sweden)

    Kizaki Keiichiro

    2007-04-01

    Full Text Available Abstract Background Cell-cell communication is an important factor in feto-maternal units during placentogenesis. The placenta produces pivotal hormones and cytokines for communication between cotyledonary villi and the maternal caruncle. Gene expression in bovine placenta throughout pregnancy was comprehensively screened by a cDNA microarray, and we searched for a common transcription factor in a gene cluster that showed increasing expression throughout gestation in cotyledonary villi and caruncle. Methods Placentomal tissues (villi and caruncle were collected from Day 25 to Day 250 of gestation for microarray analysis. Global gene expression profiles were analyzed using the k-means clustering method. A consensus sequence cis-element that may control up-regulated genes in a characteristic cluster was examined in silico. The quantitative expression and localization of a specific transcription factor were investigated in each tissue using quantitative real-time RT-PCR and in situ hybridization. Results The microarray expression profiles were classified into ten clusters. The genes with most markedly increased expression became concentrated in cluster 2 as gestation proceeded. Cluster 2 included placental lactogen (CSH1, pregnancy-associated glycoprotein-1 (PAG1, and sulfotransferase family 1E estrogen-preferring member 1 (SULT1E1, which were mainly detected in giant trophoblast binucleate cells (BNC. Consensus sequence analysis identified transcription factor AP-2 binding sites in some genes in this cluster. Quantitative real-time RT-PCR analysis confirmed that high level expression of transcription factor AP-2 alpha (TFAP2A was common to cluster 2 genes during gestation. In contrast, the expression level of another AP-2 family gene, transcription factor AP-2 beta (TFAP2B, was extremely low over the same period. Another gene of the family, transcription factor AP-2 gamma (TFAP2C, was expressed at medium level compared with TFAP2A and TFAP2B. In

  4. Explicações: modos de regulação de uma atividade globalizada Private tutoring: ways of regulation of a globalized activity

    Directory of Open Access Journals (Sweden)

    António Neto-Mendes

    2008-12-01

    Full Text Available Neste artigo analisamos os modos de regulação de uma atividade - as explicações - que é hoje um caso de sucesso em todo o mundo como oferta educativa privada e que podemos mesmo considerar paralela à do modelo escolar. Num primeiro momento, procedemos à caracterização das políticas de regulação em escala global: a situação nos países que ignoram a atividade das explicações; o caso dos países que escolheram a via da proibição, total ou parcial; o caso dos países que reconheceram a atividade e até formularam políticas educacionais que encontraram nas explicações um aliado para a melhoria dos resultados escolares. Abordaremos depois a situação em Portugal, país onde a atividade existe desde há muito, mas que conhece na atualidade um vigor novo e maior visibilidade social. Quanto às políticas de regulação das explicações em Portugal, podemos falar de uma regulação burocrática sem grande eco na prática dos profissionais, dos estudantes e das famílias. Terminaremos com algumas reflexões sobre a necessidade de se dar dimensão pública à discussão sobre a atividade das explicações, tantas e tão sérias são as suas repercussões sociais e políticas, nomeadamente em matéria de democratização do acesso e do sucesso escolares, questão nuclear que está no cerne da preocupação com a equidade no seio das políticas públicas.In this text we analyze the ways of regulation of private tutoring, an activity that is at present a success story as a private educational product with an widespread use across the world that we can even see as parallel to that of the school model. Firstly, we will characterize the regulation policies that are in place worldwide: i the situation of the countries that ignore the activity of private tutoring; ii the case of the countries that have chosen to prohibit private tutoring, totally or partially; iii the case of the countries that have recognized the activity and that have

  5. Determination of Heavy Metal and Radioactivity in Agaricus campestris Mushroom Collected from Kahramanmaraş and Erzurum Proviences

    Directory of Open Access Journals (Sweden)

    Aysenur Yilmaz

    2016-03-01

    Full Text Available In this study, radioactivity and heavy metals accumulations in Agaricus campestris mushroom collected from Kahramanmaraş and Erzurum provinces was determined. HPGe gamma detector was used for the determination of radioactivity concentrations. Heavy metal content was measured using a ICP-MS. As radioactive element; natural (238U, 232Th 40K and artificial radionuclide (137Cs concentrations were determined. The values of the committed effective dose were calculated. Same measurements were made in soils. Absorbed dose and excess lifetime cancer risk were calculated. Amount of Mg, Al, Ca, Cr, Mn, Fe, Co, Ni, Cu, Zn, As, Se, Cd, Pb206, Pb207 and Pb208 as heavy metals of mushrooms were determined. 238U, 232Th, 40K activity concentrations of mushroom collected from Erzurum was determined as 12.1 ± 0.8, 11.7 ± 0.9, 497.7 ± 17.8 Bq/kg, respectively and 137Cs was not detected by system. 232Th and 40K activity concentrations of mushroom collected from Kahramanmaraş was determined as 13.4 ± 0.5, 134.9 ± 6.3 Bq/kg, respectively, 238U and 137Cs was not detected by system similarly. The value of the committed effective dose collected from Erzurum and Kahramanmaraş were calculated as 75 and 29 μSv respectively and these values were found lower than 290 μSv accepted as world average. Absorbed dose and risk of lifetime cancer for Erzurum was determined as 37.39 nGy/h, 16.5 x 10-5; absorbed dose and excess lifetime cancer risk for Kahramanmaraş was determined as 30.92 nGy/h, 13.3 x 10-5 respectively. Amount of daily intake for each heavy metal was calculated. Radionuclide activity concentrations and accumulations of heavy metal were not founded threaten level to healthy, except from arsenic As (0.025 and 0.039 mg/kg in mushroom collected from both provinces. They were found a bit higher than upper limit (0.015 mg/kg in report which is prepared World Health Organization (WHO and Food and Agriculture Organization of the United Nations (FAO jointly.

  6. Efeito do tratamento de bacelos de videira 'Red Globe' no controle do cancro bacteriano causado por Xanthomonas campestris pv. viticola

    Directory of Open Access Journals (Sweden)

    Carine Rosa Naue

    2014-12-01

    Full Text Available A disseminação de Xanthomonas campestris pv. viticola (Xcv, agente do cancro bacteriano da videira, ocorre, dentre outras formas, por meio de mudas e bacelos infectados. Foi estudada a obtenção de material propagativo livre do patógeno, testando a eficiência do tratamento de bacelos com termoterapia, bactericidas e sanitizantes. Os isolados de Xcv foram testados quanto à patogenicidade e realizado o teste de sensibilidade in vitro aos produtos, em diferentes concentrações. A erradicação de Xcv em bacelos de videira foi testada em experimentos com termoterapia (50ºC por 30 e 40 min; 53ºC por 5 e 10 min; bactericidas [oxitetraciclina+sulfato de cobre (150+2.000; 165+2.200; 180+2.400 e 195+2.600 mg L-1 de H2O e oxitetraciclina (600; 700; 800 e 900 mg L-1]; e sanitizantes [cloreto de dodecildimetil amônio (600; 1.200; 1.800; 2.400 e 3.000 µL L-1; hipoclorito de sódio (5.000; 10.000; 20.000; 30.000 e 40.000 µL L-1 e cloreto de benzalcônio (125; 167;250; 334 e 500 µL L-1]. Foram avaliados período de incubação, incidência e severidade da doença. O bactericida oxitetraciclina e os sanitizantes cloreto de dodecildimetil amônio e hipoclorito de sódio proporcionaram os maiores halos de inibição de Xcv in vitro. No entanto, apesar dos diversos tratamentos testados, não foi possível recomendar tratamento termoterápico ou produto que erradicasse Xcv de bacelos infectados. Porém, ficou confirmada a grande importância destes na disseminação do agente do cancro bacteriano da videira.

  7. Rhizosphere competent Mesorhizobiumloti MP6 induces root hair curling, inhibits Sclerotinia sclerotiorum and enhances growth of Indian mustard (Brassica campestris Mesorhizobium loti MP6 rizosférico competente induz encurvamento do pelo daraiz, inibe Sclerotinia sclerotiorum e estimula o crescimento de mostarda indiana (Brassica campestris

    Directory of Open Access Journals (Sweden)

    Shikha Chandra

    2007-03-01

    Full Text Available The bacterial strain Mesorhizobium loti MP6, isolated from root nodules of Mimosa pudica induced growth and yield of Brassica campestris. The isolate MP6 secreted hydroxamate type siderophore in Chrom-Azurol Siderophore (CAS agar medium. Production of hydrocyanic acid (HCN, indole acetic acid (IAA and phosphate solubilizing ability was also recorded under normal growth conditions. Root hair curling was observed through simple glass-slide technique. In vitro study showed a significant increase in population of M. loti MP6 in rhizosphere due to root exudates of B. campestris. In dual culture technique the strain showed a strong antagonistic effect against Sclerotinia sclerotiorum, a white rot pathogen of Brassica campestris. The growth of S. sclerotiorum was inhibited by 75% after prolonged incubation. Efficient root colonization of mustard seedlings was confirmed by using a streptomycin-resistant marker M. loti MP6strep+. The M. loti MP6 coated seeds proved enhanced seed germination, early vegetative growth and grain yield as compared to control. Also, a drastic decline (99% in the incidence of white rot was observed due to application of M. loti MP6.A cepa bacteriana Mesorhizobium loti MP6 isolada de nódulos de raiz de Mimosa pudica induziu o crescimento e o rendimento de Brassica campestris. A cepa MP6 secretou sideróforo do tipo hidroxamato em meio sólido Chrom-Azurol Siderophore (CAS. Em condições normais de crescimento, a cepa foi também capaz de produzir de ácido cianídrico (HCN e acido indolacético (AIA e solubilizar fosfato. O encurvamento do pelo da raiz foi observado usando a simples técnica de lâmina e lamínula. Estudos in vitro mostraram um aumento significativo na população de M. loti MP6 na rizosfera devido aos exsudatos de B. campestris. Empregando-se técnica de co-cultura, a cepa mostrou um grande efeito antagônico contra o fungo Sclerotinia sclerotiorum, o patógeno da podridão branca de Brassica campestris. Ap

  8. Global transcription regulation by DNA topoisomerase I in exponentially growing Saccharomyces cerevisiae cells: activation of telomere-proximal genes by TOP1 deletion.

    Science.gov (United States)

    Lotito, Luca; Russo, Alessandra; Chillemi, Giovanni; Bueno, Susana; Cavalieri, Duccio; Capranico, Giovanni

    2008-03-21

    To establish the cellular functions of DNA topoisomerase I-B (Top1p) at a global level, we have determined the expression profiles and histone modification patterns affected by TOP1 gene deletion (DeltaTOP1) in Saccharomyces cerevisiae. In exponentially growing cells, DeltaTOP1 specifically increases transcription of telomere-proximal genes and decreases glucose utilization and energy production pathways. Immunoprecipitation data demonstrate that Top1p can bind to and is catalytically active at telomeric DNA repeats, and that both DeltaTOP1 and an inactive Y727F Top1p mutant increase H4 histone acetylation at telomere-proximal regions. Interestingly, while the Y727F mutation has no influence on enzyme recruitment to chromatin sites, it has a marked effect on H4 K16 acetylation at subtelomeric regions. The Top1p mutation also increases H3 histone K4 dimethylation, which has been associated with gene transcription, at 3' termini of subtelomeric genes. No major effect of DeltaTOP1 or mutation was detected on Sir3p recruitment; however, DeltaTOP1 has an effect on transcript levels of genes known to regulate telomeric silencing. Thus, the findings indicate that Top1p activity can favor both a repressed chromatin organization and a reduced gene expression level at telomere-proximal regions in yeast. As telomere-proximal regions are known to be enriched for stress-activated genes, our findings show that Top1p can optimize transcript levels for cell growth in exponentially growing cells under a synthetic medium with glucose.

  9. Governing Global Migration

    OpenAIRE

    2008-01-01

    This study explores the global regulative function of migration politics. Its main aim is to rethink migration politics through an engagement with the Foucauldian governmentality perspective, which focuses on the relation between government and thought. A secondary aim is to use this perspective to explore the global description of migration and migration politics which is emerging with the currently evolving global governance of migration. Doing so, it wishes to contribute both to the study ...

  10. Study on the Residues of Dimethoate in Chinese Cabbage (Brassica campestris)%乐果在小白菜中的残留动态研究

    Institute of Scientific and Technical Information of China (English)

    李俊凯; 雷贤兵; 包淑芳

    2002-01-01

    利用气相色谱法测定小白菜(Brassica campestris)中乐果的残留量,研究了乐果在小白菜中的残留动态.结果表明:乐果在小白菜中的代谢速度较缓慢,露天喷药后5 d和大棚内喷药后6 d还存在着残留超标现象.同时,人工降雨对喷药后初期残留量的影响较大,水冲洗、水浸泡和洗洁精洗涤等3种不同的洗涤方法对降低残留量到安全水平的效果并不很明显.

  11. Monosomic Addition Lines of Flowering Chinese Cabbage (B. campestris L. ssp. chinensis var. parachinensis L. H. Bailey)-Chinese Kale (B. oleracea L. var. alboglabra L. H. Bailey)

    Institute of Scientific and Technical Information of China (English)

    WANG Xi-ne; ZHANG Cheng-he; XUAN Shu-xin; MAN Hong; LIU Hai-he; SHEN Shu-xing

    2008-01-01

    Interspecific alien addition lines have played significant roles in gene mapping, intergenomic gene transfer and chromosomal homoeological identification between closely related species. Selection of alien addition lines was conducted by karyotype analysis and morphological observation with the reference of parents. Triploid interspecies hybrid (AAC, 2n=3x=29) was obtained from Brassica campestris ssp. chinensis var. parachinensis Qinglu 9601 (tetraploid, AAAA, 2n=4x=40)×B. oleracea vat. alboglabra Baihua 9705 (diploid, CC, 2n=2x=18) by immature hybrid embryo culture in vitro. Five different alien monosomic addition lines (AA+C2, AA+C3, AA+C4, AA+C6, AA+C7) were obtained from the backcross progenies of AAC×AA. Each alien monosomic addition line has some specific morphological characters. It is feasible to obtain alien addition lines from the progenies of AAC×AA by karyotype analysis and morphological observation based on the reference of parents.

  12. Nitrogen Dioxide-Induced Responses in Brassica campestris Seedlings: The Role of Hydrogen Peroxide in the Modulation of Antioxidative Level and Induced Resistance

    Institute of Scientific and Technical Information of China (English)

    MA Chun-yan; XU Xin; HAO Lin; CAO Jun

    2007-01-01

    This article investigates the responses of Brassica campestris seedlings to an acute level of nitrogen dioxide (NO2) exposure in a plant growth chamber, and examines whether pretreating plants with hydrogen peroxide (H2O2) will alleviate NO2-caused injury. Twenty-eight-day-old B. campestris plants sprayed with 10 mmol L-1 H2O2 aqueous solution (corresponding to approximate 1.0 mg H2O2 per single plant) were exposed to different concentrations of NO2 (0.25, 0.5, 1.0, and 2.0 μL L-1, respectively) for 24 h under controlled environment. To measure the plant biomass, the plants were fumigated with the same NO2 concentrations as mentioned above for 7 h per day (8.00-15.00) for 7 days. As a control, charcoal filtered air alone was applied. Data were collected on plant biomass, total chlorophyll, photosynthetic rate, stomatal conductance, nitrate and nitrate reductase (NR), antioxidative enzymes, ascorbate (ASA), and malondialdehyde (MDA),immediately after exposure. The results showed that exposure to a moderate dose of NO2 (e.g., 0.25 μL L-1) had a favorable effect on plants, and the dry weight of the above-ground part increased, whereas the exposure to high NO2 concentrations (e.g., 0.5 μL L-1 or higher) caused a reduction in the plant biomass and the total chlorophyll, when compared with the control. In addition, at 0.5 μL L-1 or higher NO2 concentrations, prominent increases in the MDA level and superoxide dismutase (SOD) and NR activities were observed. Exposure to 1 μL L-1 and higher NO2 resulted in necroses appearing on older leaves, and an increase in catalase (CAT) activity, decrease in ASA content, increased accumulation of NO3-, and reduction in photosynthesis, when compared with the controls. No changes were detected in stomatal conductance under NO2 fumigation. The pretreatment with 10 mmol L-1 H2O2 alleviated significantly NO2- caused biomass decrease and photosynthetic inhibition when compared with H2O2-untreated plants. Under NO2 fumigation, further

  13. 利用双向电泳构建十字花科黑腐病菌HrcV控制的分泌蛋白质图谱%Identification of Secreted Proteins Controlled by HrcV in Xanthomonas campestris pv.campestris

    Institute of Scientific and Technical Information of China (English)

    岑卫健; 刘娇; 付秋霞; 杨丽超; 朱平川; 姜伯乐

    2015-01-01

    以十字花科黑腐病菌(Xanthomonas campestris pv.campestris,Xcc) 8004菌株为研究材料,采用双向电泳一质谱技术鉴定HrcV控制的分泌蛋白质组.结果表明,野生型和突变体菌株均获得分辨率高且具有可重复性的双向电泳银染图谱,经过图像软件分析找出差异点61个,以野生型菌株为对照,22个蛋白点上调,39个蛋白点下调.挖取下调蛋白质点39个做质谱分析,质谱成功鉴定出25蛋白质,主要包括各种酶类、转运蛋白、延伸因子、DnaK蛋白、分子伴侣及假定蛋白.推测这些蛋白质可能在Xcc 8004的致病性中起到重要作用,为进一步研究Xcc的致病机理奠定基础.

  14. Global power production scenarios to 2100 and the dual role of forests: accelerated climate damage or regulating and provisioning ecosystem services?

    DEFF Research Database (Denmark)

    Callesen, Ingeborg

    on bioelectricity from forest biomass and the associated environmental impacts are outlined using LCA unit process data. The power production is used as a simplified proxy for the global energy supply. It is assumed that the most suitable land under each scenario is reserved for food production, and that changes......, including non-renewable and renewable energy sources, the potential role of forest biomass is investigated. The demands for forest ecosystem services imposed by the global power production are assessed in the present study. Three global power supply scenarios to 2050 with different emphasis...

  15. Global power production scenarios to 2100 and the dual role of forests: accelerated climate damage or regulating and provisioning ecosystem services?

    DEFF Research Database (Denmark)

    Callesen, Ingeborg

    The worlds' electrical power production is depending on the current energy infrastructure, and future investments in new power supply facilities using renewable and non-renewable energy sources. Continued growth in power production in the 21st century will cause global environmental change (GEC......). GEC with climate change as an important driver will affect the environment and the economy in multiple ways that can be summarized as losses of biodiversity and changing ecosystem services (ES), but with very diverse temporal and spatial impacts. In a simple global growth model for power production......, including non-renewable and renewable energy sources, the potential role of forest biomass is investigated. The demands for forest ecosystem services imposed by the global power production are assessed in the present study. Three global power supply scenarios to 2050 with different emphasis...

  16. Market, Regulation, Market, Regulation

    DEFF Research Database (Denmark)

    Frankel, Christian; Galland, Jean-Pierre

    2015-01-01

    This paper focuses on the European Regulatory system which was settled both for opening the Single Market for products and ensuring the consumers' safety. It claims that the New Approach and Standardization, and the Global Approach to conformity assessment, which suppressed the last technical...... barriers to trade in Europe, realized the free movement of products by organizing progressively several orders of markets and regulation. Based on historical and institutional documents, on technical publications, and on interviews, this article relates how the European Commission and the Member States had...... alternatively recourse to markets and to regulations, at the three main levels of the New Approach Directives implementation. The article focuses also more specifically on the Medical Devices sector, not only because this New Approach sector has long been controversial in Europe, and has recently been concerned...

  17. 全球化背景下的跨国公司国际规范研究%Research on international regulations of transnational companies under the globalization context

    Institute of Scientific and Technical Information of China (English)

    张静

    2011-01-01

    在经济全球化过程中,熟悉国际游戏规则和全球价值规范成为各国企业首先面临的一个问题.本文主要研究跨国公司的国际规范,即跨国公司在不同的国家和地区处理跨国经营问题时,被广泛接受并认可的用于约束跨国公司行为的国际伦理规范.%During the process of globalization, one of the most important questions which many countries encounter is to familiarize the international rule of game and global value regulations. The target of this thesis is to study the international regulations of transnational regulations, that is the widely accepted international ethical guidelines applied to transnational companies when they solving different business issues in different countries or regions.

  18. Formulação de meios de cultivo à base de soro de leite para a produção de goma xantana por X. Campestris C7L Formulation of whey-based media for xanthan gum production by X. Campestris C7L isolate

    Directory of Open Access Journals (Sweden)

    Marcia NITSCHKE

    2001-01-01

    Full Text Available A goma xantana é um polissacarídeo microbiano de grande significado comercial especialmente para a indústria de alimentos. O objetivo deste trabalho foi avaliar a produção de xantana em diferentes meios de cultura à base de soro de leite utilizando o isolado Xanthomonas campestris C7L. Dentre as formulações testadas o meio de soro de leite integral produziu maior viscosidade e concentração final de xantana. Um sistema combinando soro integral (0,35% de proteína e soro filtrado (0,18%de proteína foi proposto. Na primeira fase em soro integral a produção de xantana foi de 13g/L e 45% de rendimento,enquanto que na segunda fase utilizando-se soro filtrado obteve-se um total de 28g/L de xantana e 75% de rendimento. O rendimento geral do processo foi de 55% e a viscosidade final do meio atingiu 18000cP. As soluções de xantana produzidas em soro de leite apresentaram comportamento pseudoplástico e tixotrópico característicos deste tipo de polímero. O isolado C7L demonstrou capacidade de produzir gomas de alta viscosidade e qualidade em soro de leite, constituindo uma alternativa promissora para a produção industrial de goma xantana a partir deste subproduto.Xanthan gum is a microbial polysaccharide of great commercial interest, especially in the food industry. The aim of this work was the evaluation of xanthan gum production from different whey - based media by a lactose utilizing Xanthomonas campestris C7L isolate. Three whey media formulations were tested: unfiltered whey, filtered whey and hydrolyzed whey. The medium composed of unfiltered whey showed the highest viscosities and xanthan concentrations. A two stage fermentation strategy, combining unfiltered whey (0,35% protein and filtered whey (0,18% protein, was proposed. The first stage, using unfiltered whey medium, showed a xanthan production of 12g/L and a 45% yield. The second stage, with filtered whey addition, gave final xanthan concentration of 28g/L and a 75% yield

  19. Globalization, Globalisation

    OpenAIRE

    Ethier, Wilfred J.

    2002-01-01

    This paper addresses a complex of globalization issues: the effect of globalization on the skill premium; the effect of globalization on unemployment; the relative importance of globalization and exogenous technical change; the effect of globalization on the ability of national governments to conduct independent social policies. Thinking about these topics has been dominated by a large empirical literature concluding that trade has played a relatively minor role in the rise of the skill premi...

  20. Against Globalization

    DEFF Research Database (Denmark)

    Philipsen, Lotte; Baggesgaard, Mads Anders

    2013-01-01

    In order to understand globalization, we need to consider what globalization is not. That is, in order to understand the mechanisms and elements that work toward globalization, we must, in a sense, read against globalization, highlighting the limitations of the concept and its inherent conflicts....... Only by employing this as a critical practice will we be analytically able to gain a dynamic understanding of the forces of globalization as they unfold today and as they have developed historically....

  1. Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1 on nitrogen and light regulation in Arabidopsis

    Directory of Open Access Journals (Sweden)

    Obertello Mariana

    2010-08-01

    Full Text Available Abstract Background Nitrogen and light are two major regulators of plant metabolism and development. While genes involved in the control of each of these signals have begun to be identified, regulators that integrate gene responses to nitrogen and light signals have yet to be determined. Here, we evaluate the role of bZIP1, a transcription factor involved in light and nitrogen sensing, by exposing wild-type (WT and bZIP1 T-DNA null mutant plants to a combinatorial space of nitrogen (N and light (L treatment conditions and performing transcriptome analysis. We use ANOVA analysis combined with clustering and Boolean modeling, to evaluate the role of bZIP1 in mediating L and N signaling genome-wide. Results This transcriptome analysis demonstrates that a mutation in the bZIP1 gene can alter the L and/or N-regulation of several gene clusters. More surprisingly, the bZIP1 mutation can also trigger N and/or L regulation of genes that are not normally controlled by these signals in WT plants. This analysis also reveals that bZIP1 can, to a large extent, invert gene regulation (e.g., several genes induced by N in WT plants are repressed by N in the bZIP1 mutant. Conclusion These findings demonstrate that the bZIP1 mutation triggers a genome-wide de-regulation in response to L and/or N signals that range from i a reduction of the L signal effect, to ii unlocking gene regulation in response to L and N combinations. This systems biology approach demonstrates that bZIP1 tunes L and N signaling relationships genome-wide, and can suppress regulatory mechanisms hypothesized to be needed at different developmental stages and/or environmental conditions.

  2. El tratamiento jurídico de las migraciones internacionales a través de las regulaciones globalistas de gestión de mano de obra (The Legal Treatment of International Migrations Through Globalized Labour Management Regulation

    Directory of Open Access Journals (Sweden)

    Iker Barbero González

    2011-05-01

    Full Text Available This article deals with the emerging global tendency to regulate international migrations, not by regarding a universal humanitarian and labour Law, but according to neoliberal normative production standards: flexibility, informality, governance… Supranational institutions such as the WTO, the IOM or the EU are establishing normative agreements (GATS, the NAFTA, the EEC… that regulate migrations as labour and in profit of the global markets. The new contractual models become fragmented titles that recognize rights as immigrant workers and not as a persons or human beings, placing in a legal limbo those who migrate outside the established mechanisms and that not meet the qualification requirements of the global workforce. This text is addressed to the analysis of the categorization of migrants as disposable labour in the global management of the flows.Este texto está dedicado al análisis de la categorización del migrante como mera “mano de obra” en la gestión global de los flujos. Existe una tendencia global a regular las migraciones, no desde un Derecho formal universal, sino desde lo que podría ser denominado en sentido amplio “Soft Law”. Así, las distintas normas que, a nivel mundial, se encargan de ordenar las migraciones son creadas de acuerdo a los criterios de producción jurídica característicos de la etapa contemporánea de globalización neoliberal: flexibilidad, informalidad, descentralización, gobernanza, etc. Instituciones supranacionales como la OIM, la OMC o la Unión Europea (con la intervención de los Estados nación o sin ella establecen estándares normativos (el AGCS o GATS, el TLCNA, la Blue Card, etc, mediante los cuales se regulan los flujos de migrantes atendiendo a las necesidades del mercado mundial. Los nuevos modelos contractuales se convierten en títulos fragmentados reconocedores de derechos en tanto que trabajador inmigrante y no como persona o ser humano, situando de esta manera, en un penoso

  3. Method Research of Proteomic Profile Identification on Xanthomonas campestris pv.campestris by LC-MS/MS%基于LC-MS/MS策略建立十字花科黑腐病菌蛋白质表达谱的方法研究

    Institute of Scientific and Technical Information of China (English)

    岑卫健; 甘永亮; 于凯; 付强; 韦宇拓; 姜伯乐

    2014-01-01

    【目的】建立十字花科黑腐病菌(Xanthomonas campestris pv.campestris ,Xcc )的蛋白质组学研究平台,用于分离、鉴定该菌的致病相关蛋白质。【方法】Xcc 8004经过液体培养,分别提取胞内蛋白质和胞外蛋白质,对所有蛋白质进行液体酶解,通过强阳离子交换色谱预分离多肽混合物,预分离后的馏分采用 EASY-nLC 结合LTQ-Orbitrap 质谱鉴定蛋白质表达谱。【结果】建立了基于 bottom-up 策略的蛋白质组鉴定方法,采用第一维离子交换预分离和第二维反相色谱分离结合,实现了高通量鉴定蛋白质组表达谱的技术体系。通过 SEQUEST 检索,在胞内蛋白质样品中共鉴定蛋白质数目为1595个,胞外蛋白质样品共鉴定蛋白质数目为1241个。【结论】建立的 LC-MS/MS 方法适合用于十字花科黑腐病菌蛋白质组学的研究,为研究微生物植物相互作用奠定了方法与理论基础。%[Objective ]A proteomics technical platform of Xanthomonas campestris pv . campestris (Xcc )was established for the separation and identification of pathogenic bacteria associated proteins.[Methods]The intracellular proteins and extracellular proteins of Xcc 8004 strains were extracted after liquid cultured.After in-solution digestion of total proteins,the peptides mixtures were separated by strong cation exchange (SCX)column.The proteome pro-files were acquired by EASY-nLC combined LTQ-Orbitrap mass spectrometer.[Results]Based on bottom-up method,the proteins were analyzed by cation exchange column and nanoflow re-versed-phase liquid chromatography.The high proteomic profile identification was realized.The mass spectrometry data were searched with SEQUEST.As a result,a total of 1595 proteins were obtained from intracellular proteins and a total of 1241 proteins were obtained from extra-cellular proteins.[Conclusion]LC-MS/MS work-flow could be utilized successfully in the pro-teomics research of Xcc

  4. XopXccP, a putative type Ⅲ effector gene of Xanthomonas campestris pv.campestris,is required for pathogenicity on host plants%一个推测的野油菜黄单胞菌Ⅲ型分泌效应子基因XopXccP对寄主植物的致病性分析

    Institute of Scientific and Technical Information of China (English)

    李伟兰; 戎伟; 何朝族

    2014-01-01

    野油菜黄单胞菌野油菜致病变种(Xanthomonas campestris pv.campestris,Xcc)是一种在全球范围内引起十字花科植物黑腐病的重要病原细菌.Xcc中效应蛋白与植物互作机理的研究还不够全面,在已经测序的菌株Xcc 8004中,Xc_2994基因预测编码一个Ⅲ型分泌效应蛋白XopXccP,其生物学功能尚不清楚.为了探索XopXccP的生物学功能,我们构建了Xcc 8004菌株的XopXccP基因缺失突变体,结果发现XopXccP基因缺失后,病原菌在多个甘蓝、花椰菜以及模式植物拟南芥(Col-0)上的致病性显著下降,甚至几乎不致病.同时,采用农杆菌侵染拟南芥花序的转化方法,获得了转XopXccP基因拟南芥纯系,经过诱导效应蛋白XopXccP在拟南芥中表达,发现转基因拟南芥出现类似病斑的细胞死亡.本研究结果初步证明,XopXccP是一种毒性蛋白,是Xcc 8004对多数十字花科植物致病所必须的.

  5. 十字花科黑腐病菌编码RNA聚合酶ω亚基的基因(rpoZXcc)突变导致细胞生长减慢%Inactivation of rpoZXcc, a gene encodes the ω subunit of RNAP, results in reduced growth rate of Xanthomonas campestris pv. campestris

    Institute of Scientific and Technical Information of China (English)

    周洁; 唐纪良; 唐东阶

    2010-01-01

    ω(Omega)亚基是组成细菌RNA聚合酶(RNA polymerase,RNAP)核心酶的5个亚基(2α、β、β′andω)中最小的一个,也是5个亚基中唯一可以去除而不会导致细胞死亡的亚基.尽管ω亚基存在于所有细菌中并且序列非常保守,但迄今为止,人们对ω亚基的功能却知之甚少.基因组注释结果表明,十字花科黑腐病菌8004菌株(Xanthomonas campestris pv.campestris strain 8004,简称Xcc8004)基因组中存在一个编码ω亚基的基因rpoZXcc(ORF编号为XC0957).为了研究Xcc RNA聚合酶ω亚基的功能,采用自杀质粒pK18mob整合突变方法,构建了rpoZXcc因的非极性突变体NK0957.表型检测结果显示,NK0957在基本培养基MMX和丰富培养基NYG中的生长比野生型菌株Xcc8004的生长明显减慢,而且NK0957的生长缓慢表型能被rpoZXcc反式互补.这些结果说明,ω亚基在Xcc的生长过程中发挥重要作用.

  6. In silico analysis of two component system genes and its protein domain arrangement in Xanthomonas campestris pv.campestris 8004%野油菜黄单胞菌Xcc 8004双组分信号转导系统基因及其蛋白架构分析

    Institute of Scientific and Technical Information of China (English)

    潘俊霞; 付珊; 姚任之; 唐学慧; 何勇强; 姜伟

    2015-01-01

    Xanthomonas campestris pv.campestris(Xcc 8004)是一个拥有复杂代谢循环的革兰氏阴性植物病原菌,它能侵染几乎所有的十字花科植物引起黑腐病.基因注释表明,该基因组存在大量编码双组分信号转导系统的基因,本研究利用生物信息学方法鉴定编码双组分信号转导系统感受蛋白和响应调控蛋白基因,结果表明,Xcc 8004共有111个双组分信号转导系统基因,55个感受基因中的30个与响应调控基因成对存在,很有可能组成一个双组分信号转导系统,25个感受基因和26个响应调控基因独立存在于基因组中.另外,还发现3个HKs和2个RRs未被注释.本文拟通过分析双组分信号转导系统基因及其编码蛋白的功能域架构,为Xcc 8004双组分调控系统的功能研究和防治病害提供参考.

  7. Type Ⅳ secretion system of Xanthomonas campestris pv.campestris is induced in MMX and related to stress resistance%十字花科黑腐病菌Ⅳ型分泌系统的诱导表达与抗逆功能分析

    Institute of Scientific and Technical Information of China (English)

    蒋国凤; 韦蕾蕾; 张正淳; 徐勇; 张君成; 何勇强; 姜伯乐

    2015-01-01

    细菌通过Ⅳ型分泌系统(TypeⅣSecretion System,T4SS)的接合系统、效应物转运系统和释放/吸收系统3个子家族进行DNA、蛋白质及毒素的分泌和转运.十字花科黑腐病菌(Xanthomonas campestris pv.campestris,Xcc)是一种重要的植物病原菌,也是研究植物病原细菌与植物相互作用机理的模式细菌之一.本研究通过检测Xcc 8004野生型菌株和T4SS突变体在不同条件下的生长、诱导情况及对过敏反应的影响发现:T4SS不影响在培养基中的生长,与野生型菌株相比,T4SS突变体在非寄主辣椒ECW-10R上的过敏反应减弱;T4SS相关基因受基本培养基MMX诱导表达,且与Ni2+、H2O2、Phenol等抗逆相关.推测T4SS相关基因在该病原菌的接触、识别阶段起作用.

  8. Establishment and Optimization Analysis of Two-Dimensional Electrophoresis System for the Secreted Proteins of Xanthomonas campestris pv.campestris%十字花科黑腐病菌分泌蛋白质双向电泳条件的构建及优化

    Institute of Scientific and Technical Information of China (English)

    岑卫健; 成春燕; 杨丽超; 王凛; 姜伯乐

    2015-01-01

    本研究旨在建立一套适合于十字花科黑腐病菌(Xanthomonas campestris pv.campestris 8004,Xcc 8004)分泌蛋白质的双向电泳技术(two-dimensional electrophoresis,2-DE),以便更好的利用蛋白质组学技术鉴定Xcc 8004的分泌蛋白质.我们就MME和XCM2两种培养基对分泌蛋白质的诱导能力、蛋白质提取方法以及样品上样量等方面对2-DE的影响进行了比较,结果表明,XCM2培养基对Xcc 8004分泌蛋白质的诱导能力比MME强.用TCA/丙酮法沉淀蛋白质得到的双向电泳图谱背景清晰,分辨率高.分别采用400 μg、300μg、250 μg和150 μg四个不同的上样量进行双向电泳,结果显示在上样量为250~300 μg时(IPG pH 3-10,24 cm),电泳图谱分辨率最好.综上可知,XCM2培养基比较适合用于Xcc 8004分泌蛋白质的诱导,TCA/丙酮法提取分泌蛋白质为较优方法,250~300 μg是较为合适的上样量.

  9. 十字花科黑腐病菌基因XC0596的突变体构建及其致病性研究%Construction of XC0596 Gene Mutant in Xanthomonas Campestris Pv.campestris and Research of Its Pathogenicity

    Institute of Scientific and Technical Information of China (English)

    伍燕

    2012-01-01

    十字花科黑腐病菌(Xantyomonas campestris pv.campestris,简称Xcc),能引起十字花科植物产生黑腐病。本研究采用自杀质粒pKl8Mob介导的整合突变体办法构建了十字花科黑腐病菌Xcc8004菌株中编码假设蛋白的基因XC0596的极性突变体pK0596。对突变体的致病力检测发现这一研究表明,XC0596与十字花科黑腐病菌生长有关,并在致病中发挥重要作用。%Xanthomonas campestris pv.eampestris (Xcc)is the causal agent of black rot disease of crucifers plant, resulting significant reduction in yield and quality. A polar mutant pK0596 of coding the conserved hypothetical protein gene XC0596 of the Xcc 8004 wild strain was constructed by homologous integration with a suicide plasmid pK18mob.The mutant pK0596 showed significandy reduced in virulence compared to wild-type strain, delayed the ability to induce a hypersensitive response (HR) in the nonhost pepper plant (EWC- 10R).In addition, the growth of the mutant pK0596 in the minimal medium showed that its became smaller and slowly than the wild-type Xcc 8004. This study suggests that the conserved hypothetical gene XC0596 is required for the growth of Xcc 8004 in the minimal medium and plays an important role in virulence of this pathogen.

  10. The Impact of Metal Ions on Expression of Different Virulence System in Xanthomonas campestris pv.campestris%金属离子对十字花科黑腐病菌不同致病系统表达的影响

    Institute of Scientific and Technical Information of China (English)

    唐江涛; 王成; 周乐; 韦载娲; 付秋霞; 杨丽超; 梁晓夏; 姜伯乐

    2015-01-01

    十字花科黑腐病菌(Xanthomonas campestris pv.campestris,Xcc)是引起十字花科植物黑腐病的病原细菌,其通过不同的分泌系统将效应物蛋白或细胞毒素转运进真核宿主细胞产生病害,对农业生产造成巨大的经济损失.本研究利用GUS融合报告系统,考察了常见的几种不同金属离子(Zn2+,Mn2+,Ca2+,Fe2+)对Xcc 8004不同致病系统装置基因表达的影响.结果表明,在1 μmol/L~1 mmol/L浓度区间,Zn2+和Mn2+同时对XccⅡ型分泌系统(T2SS)和Ⅲ型分泌系统(T3SS)有抑制作用;在大于0.01 mmol/L浓度时,Ca2+特异性抑制T3SS;Fe2+同时抑制T2SS、T3SS和Ⅳ型分泌系统(T4SS)装置基因的表达.金属离子Zn2+、Mn2+、Ca2+和Fe2+在不同浓度下对Xcc的致病系统均有抑制作用.本研究为分析病原细菌不同分泌系统响应金属离子的模式奠定了基础.

  11. Global Strategy

    DEFF Research Database (Denmark)

    Li, Peter Ping

    2013-01-01

    Global strategy differs from domestic strategy in terms of content and process as well as context and structure. The content of global strategy can contain five key elements, while the process of global strategy can have six major stages. These are expounded below. Global strategy is influenced...... by rich and complementary local contexts with diverse resource pools and game rules at the national level to form a broad ecosystem at the global level. Further, global strategy dictates the interaction or balance between different entry strategies at the levels of internal and external networks....

  12. Global Health

    Science.gov (United States)

    ... globalhealth/what/default.htm) CDC protects Americans through global health. frame support disabled and/or not supported ... Public Health Emergencies More stories Infographic More infographics Global Health & You OUTBREAKS DISEASES & CONDITIONS TRAVEL CDC JOBS ...

  13. Globalization & technology

    DEFF Research Database (Denmark)

    Narula, Rajneesh

    Technology and globalization are interdependent processes. Globalization has a fundamental influence on the creation and diffusion of technology, which, in turn, affects the interdependence of firms and locations. This volume examines the international aspect of this interdependence at two levels...

  14. Transgenic expression of the rice Xa21 pattern-recognition receptor in banana (Musa sp.) confers resistance to Xanthomonas campestris pv. musacearum.

    Science.gov (United States)

    Tripathi, Jaindra N; Lorenzen, Jim; Bahar, Ofir; Ronald, Pamela; Tripathi, Leena

    2014-08-01

    Banana Xanthomonas wilt (BXW), caused by the bacterium Xanthomonas campestris pv. musacearum (Xcm), is the most devastating disease of banana in east and central Africa. The spread of BXW threatens the livelihood of millions of African farmers who depend on banana for food security and income. There are no commercial chemicals, biocontrol agents or resistant cultivars available to control BXW. Here, we take advantage of the robust resistance conferred by the rice pattern-recognition receptor (PRR), XA21, to the rice pathogen Xanthomonas oryzae pv. oryzae (Xoo). We identified a set of genes required for activation of Xa21-mediated immunity (rax) that were conserved in both Xoo and Xcm. Based on the conservation, we hypothesized that intergeneric transfer of Xa21 would confer resistance to Xcm. We evaluated 25 transgenic lines of the banana cultivar 'Gonja manjaya' (AAB) using a rapid bioassay and 12 transgenic lines in the glasshouse for resistance against Xcm. About 50% of the transgenic lines showed complete resistance to Xcm in both assays. In contrast, all of the nontransgenic control plants showed severe symptoms that progressed to complete wilting. These results indicate that the constitutive expression of the rice Xa21 gene in banana results in enhanced resistance against Xcm. Furthermore, this work demonstrates the feasibility of PRR gene transfer between monocotyledonous species and provides a valuable new tool for controlling the BXW pandemic of banana, a staple food for 100 million people in east Africa.

  15. Promotion by 5-Aminolevulinic Acid of Germination of Pakchoi (Brassica campestris ssp. chinensis var. communis Tsen et Lee) Seeds Under Salt Stress

    Institute of Scientific and Technical Information of China (English)

    Liang-Ju WANG; Wei-Bing JIANG; Hui LIU; Wei-Qin LIU; Lang KANG; Xi-Lin HOU

    2005-01-01

    The seed germination and seedling growth of pakchoi (Brassica campestris ssp. chinensis var.communis Tsen et Lee cv. Hanxiao) were not significantly inhibited until the concentration of NaCl was increased to150 mmol/L. Treatment of pakchoi seeds with exogenous 5-aminolevulinic acid (ALA), at concentrations ranging from 0.01 to 10.00 mg/L, promoted seed germination when seeds were stressed by salinity, whereas levulinic acid (LA), an inhibitor of ALA dehydrase, significantly inhibited seed germination and seedling growth, suggesting that metabolism of ALA into porphyrin compounds was necessary for seed germination and seedling growth. Determination of respiratory rate during seed germination showed that ALA increased seed respiration under both normal conditions and salt stress. Furthermore, salt stress decreased levels of endogenous ALA, as well as heme, in etiolated seedlings. More salt-tolerant cultivars of pakchoi contained higher relative levels of endogenous ALA and heme under conditions of salt stress.These results indicate that salt stress may inhibit the biosynthesis of endogenous ALA and then heme,which is necessary for seed germination, and treatment of seeds with exogenous ALA prior to germination may be associated with the biosynthesis of heme.

  16. Bioaccumulation and translocation of cadmium in cole (Brassica campestris L.) and celery (Apium graveolens) grown in the polluted oasis soil,Northwest of China

    Institute of Scientific and Technical Information of China (English)

    Yiming Yang; Zhongren Nan; Zhuanjun Zhao; Zhaowei Wang; Shengli Wang; Xia Wang; Wangqiang Jin; Cuicui Zhao

    2011-01-01

    A pot experiment was conducted to study the bioaccumulation and translocation of cadmium (Cd) in cole (Brassica campestris L.) and celery (Apium graveolens) grown in the Cd-polluted oasis soil,Northwest of China.The results showed that Cd in the unpolluted oasis soil was mainly bound to carbonate fraction (F2) and Fe-Mn oxide fraction (F3).However,marked change of Cd fractions was observed with increasing soil Cd concentrations,in which the concentration of Cd in F1 (exchangeable fraction),F2 and F3 increased significantly (p < 0.001 for F1,F2 and F3).The growth of cole and celery could be facilitated by low concentrations of Cd,but inhibited by high concentrations.The correlation analysis between the fraction distribution coefficient of Cd in the soil and Cd concentration accumulated in the two vegetables showed that Cd in FI in the soil made the greatest contribution on the accumulation of Cd in the two vegetables.The high bio-concentration factor and the translocation factor of Cd in both cole and celery were observed,and Cd had higher accumulation in the edible parts of the two vegetables.Therefore,both cole and celery grown in Cd-polluted oasis soil have higher risk to human health.And the two vegetables are not suitable to be cultivated as vegetables consumed by human in the Cd-polluted oasis soil.

  17. Removal of dimethoate residues in Brassica campestris through different methods%上海青残留乐果的去除方法

    Institute of Scientific and Technical Information of China (English)

    游泳; 王长方; 王俊; 陈峰; 胡进锋

    2008-01-01

    比较水浸泡、洗洁精浸洗、臭氧处理、光照等不同处理方法对上海青[Brassica campestris L.ssp.Chinensis (L.) Makino]上乐果残留的去除效果.结果表明,在pH值为11的水中浸泡30 min,乐果残留的去除率为61.43%;用含0.05%完美芦荟蔬果洁净剂的水浸洗30 min,残留去除率为63.22%;通臭氧30 min的水浸泡30 min,去除率达46.28%;100 W高压汞灯照射60 min,去除率达61.55%.各种方法对乐果农药残留都有不同程度的去除作用.

  18. Production of intergeneric allotetraploid between autotetraploid non-heading Chinese cabbage (Brassica campestris ssp. chinensis Makino and autotetraploid radish (Raphanus sativus L.

    Directory of Open Access Journals (Sweden)

    Sun Cheng-Zhen

    2014-03-01

    Full Text Available Intergeneric hybrids between non-heading Chinese cabbage (Brassica campestris ssp. chinensis Makino; 2n = 4x = 40 and radish (Raphanus sativus L.; 2n = 4x = 36 were obtained through ovary culture and embryo rescue. Some hybrid embryos (0.11 per ovary were produced, but only 4 of them germinated. As most hybrid embryos failed to develop into plantlets directly, plants were regenerated by inducing shoots on the cultured cotyledon and inducing roots on the root induction medium. All hybrid plants were morphologically uniform. They resembled the non-heading Chinese cabbage in the long-lived habit, the plant status, the vernalization requirement and the petiole color, while the petiole shape, leaf venation pattern and flowers were more similar to those of radish. Upon examination of the flowers, these were found to have normal pistil, but rudimentary anthers with non-functional pollen grains. The somatic chromosome number of F1 plants was 38. Analysis of SSR banding patterns provided additional confirmation of hybridity.

  19. Interaction effects on uptake and toxicity of perfluoroalkyl substances and cadmium in wheat (Triticum aestivum L.) and rapeseed (Brassica campestris L.) from co-contaminated soil.

    Science.gov (United States)

    Zhao, Shuyan; Fan, Ziyan; Sun, Lihui; Zhou, Tao; Xing, Yuliang; Liu, Lifen

    2017-03-01

    A vegetation study was conducted to investigate the interactive effects of perfluoroalkyl substances (PFASs), including perfluorooctanoic acid (PFOA) and perfluorooctane sulfonate (PFOS), and Cadmium (Cd) on soil enzyme activities, phytotoxicity and bioaccumulation of wheat (Triticum aestivum L.) and rapeseed (Brassica campestris L.) from co-contaminated soil. Soil urease activities were inhibited significantly but catalase activities were promoted significantly by interaction of PFASs and Cd which had few effects on sucrase activities. Joint stress with PFASs and Cd decreased the biomass of plants and chlorophyll (Chl) content in both wheat and rapeseed, and malondialdehyde (MDA) content, superoxide dismutase (SOD) and peroxidase (POD) activities were increased in wheat but inhibited in rapeseed compared with single treatments. The bioconcentration abilities of PFASs in wheat and rapeseed were decreased, and the translocation factor of PFASs was decreased in wheat but increased in rapeseed with Cd addition. The bioaccumulation and translocation abilities of Cd were increased significantly in both wheat and rapeseed with PFASs addition. These findings suggested important evidence that the co-existence of PFASs and Cd reduced the bioavailability of PFASs while enhanced the bioavailability of Cd in soil, which increased the associated environmental risk for Cd but decreased for PFASs.

  20. Evaluation of the roles that alkyl hydroperoxide reductase and Ohr play in organic peroxide-induced gene expression and protection against organic peroxides in Xanthomonas campestris.

    Science.gov (United States)

    Vattanaviboon, Paiboon; Whangsuk, Wirongrong; Panmanee, Warunya; Klomsiri, Chananat; Dharmsthiti, Saovanee; Mongkolsuk, Skorn

    2002-11-29

    Alkyl hydroperoxide reductase (ahpC) and organic hydroperoxide resistance (ohr) are distinct genes, structurally and regulatory, but have similar physiological functions. In Xanthomonas campestris pv. phaseoli inactivation of either gene results in increased sensitivity to killing with organic peroxides. An ahpC1-ohr double mutant was highly sensitive to both growth inhibition and killing treatment with organic peroxides. High level expression of ahpC or ohr only partially complemented the phenotype of the double mutant, suggesting that these genes function synergistically, but through different pathways, to protect Xanthomonas from organic peroxide toxicity. Functional analyses of Ohr and AhpC abilities to degrade organic hydroperoxides revealed that both Ohr and AhpC could degrade tert-butyl hydroperoxide (tBOOH) while the former was more efficient at degrading cumene hydroperoxide (CuOOH). Expression analysis of these genes in the mutants showed no compensatory alterations in the levels of AhpC or Ohr. However, CuOOH induced expression of these genes in the mutants was affected. CuOOH induced ahpC expression was higher in the ohr mutant than in the parental strain; in contrast, the ahpC mutation has no effect on the level of induced ohr expression. These analyses reveal complex physiological roles and expression patterns of seemingly functionally similar genes.

  1. Differential Expression Analysis of Genic Male Sterility A/B Lines in Chinese Cabbage-Pak-Choi(Brassica Campestris ssp. chinensis Makino)

    Institute of Scientific and Technical Information of China (English)

    WANG Yong-qin; CAO Jia-shu; FU Qing-gong; YU Xiao-lin; YE Wan-zhi; XIANG Xun

    2003-01-01

    To determine differential expression of genic male sterility A/B lines in Chinese cabbage-pakchoi (Brassica campestris ssp. chinensis Makino var. communis Teen et Lee), we used the RNA fingerprinting technique, cDNA-AFLP analysis, in different developmental stages and different tissues. While no obvious differential expressions were observed in rosette leaves, florescence leaves, and scapes, some differential expressions were found in alabstrums of A/B lines and among leaves, scapes and alabstrums. We analyzed the alabstrums collected in different developmental stages with 10 primer combinations. We got a unique band between middle size alabstrums and large alabstrums in B line in one of the ten pair primers, and in another one pair, one band reflecting a higher gene-expression level in A line than that in B line was obtained. No unique bands were found with the other primer combinations. The bands reflecting different gene-expression level were confirmed by Northern hybridization. The results indicated that cDNA-AFLP was a suitable tool for studying differential expression of genic male sterility in plants. SDS-polyacrylamide gel electrophoresis patterns of soluble proteins further verified the difference in A/B lines.

  2. Effect of Mentha spicata L. and Artemisia campestris extracts on the shelf life and quality of vacuum-packed refrigerated sardine (Sardina pilchardus) fillets.

    Science.gov (United States)

    Houicher, Abderrahmane; Kuley, Esmeray; Bendeddouche, Badis; Ozogul, Fatih

    2013-10-01

    The present study investigated the effects of ethanolic extracts obtained from Mentha spicata and Artemisia campestris on the shelf life and the quality of vacuum-packed sardine fillets stored at 3 ± 1°C for a period of 21 days. The three groups were tested were VC, control group; VM, group treated with 1 % mint extract; and VA, group treated with 1 % artemisia extract. The observed shelf life of sardine fillets was 10 days for control samples, whereas the combination of vacuum packaging with mint and artemisia extracts extended the product's shelf life to 17 days. Among the chemical indices determined, the thiobarbituric acid-reactive substances values were significantly lower in VM samples. Total volatile base nitrogen was maintained at low levels in VA samples until 17 days of chilled storage. Results of aerobic plate counts and coliform counts showed the existence of a reduced growth in VA group, whereas lactic acid bacteria did not show a significant difference among groups. Natural extract treatments combined with vacuum packaging showed lower microbiological and chemical indices, indicating that the presence of phenolic compounds in mint and artemisia extracts and the removal of oxygen in the pack retarded lipid oxidation and reduced the growth of microorganisms, which resulted in preventing spoilage and extending the product's shelf life.

  3. Molecular cloning and characterization of a novel pollen predominantly membrane protein gene BcMF12 from Brassica campestris ssp. chinensis.

    Science.gov (United States)

    Song, Jianghua; Zhang, Lixin; Cao, Jiashu

    2009-11-01

    A novel membrane protein gene, BcMF12, was isolated from Chinese cabbage (Brassica campestris L. ssp. chinensis Makino) using rapid amplification of the cDNA ends based on a pollen-specific cDNA fragment (DN237936). The cDNA was 1,155 bp in length with an open reading frame of 894 bp capable of encoding a putative polypeptide of 297 amino acids with an estimated molecular mass of 34.6 kDa and a predicted isoelectric point of 9.6. Comparative and bioinformatics analyses revealed that BcMF12 showed high similarities with some membrane protein sequences previously published in the public database and contained six highly conserved transmembrane domains corresponding to six highly hydrophobic regions. This indicates that BcMF12 may be a putative membrane protein. RNA gel blot analysis indicated that the transcripts of BcMF12 were abundant in the flower bud, flower and anther, but not detected in the root, stem, leaf and pistil. Moreover, the BcMF12 transcripts were detectable at the late stages of pollen development. Morphological investigations of pollen from the BcMF12 antisense transgenic plants showed that most of pollen grains of transgenic plants were abnormal. These results strongly suggest that BcMF12 is a novel pollen-preferentially membrane protein which play an important role during the pollen development in Chinese cabbage.

  4. PEMANASAN GLOBAL

    Directory of Open Access Journals (Sweden)

    Vivi Triana

    2008-03-01

    Full Text Available Pemanasan global (global warming pada dasarnya merupakan fenomena peningkatan temperature global dari tahun ke tahun karena terjadinya efek rumah kaca (greenhouse effect yang disebabkan oleh meningkatnya emisi gas-gas seperti karbondioksida (CO2, metana (CH4, dinitrooksida (N2O dan CFC sehingga energy matahari terperangkap dalam atmosfer bumi. Berbagai literatur menunjukkan kenaikan temperatur global termasuk Indonesia yang terjadi pada kisaran 1,5 – 40 °C pada akhir abad 21.

  5. Global Europa

    DEFF Research Database (Denmark)

    Manners, Ian

    2010-01-01

    at the mythology of ‘global Europa' - the EU in the world. It concludes with a reflection on the way in which the many diverse myths of global Europa compete for daily attention, whether as lore, ideology, or pleasure. In this respect the mythology of global Europa is part of our everyday existence, part of the EU...

  6. Insights from the Cold Transcriptome and Metabolome of Dendrobium officinale: Global Reprogramming of Metabolic and Gene Regulation Networks during Cold Acclimation

    Science.gov (United States)

    Wu, Zhi-Gang; Jiang, Wu; Chen, Song-Lin; Mantri, Nitin; Tao, Zheng-Ming; Jiang, Cheng-Xi

    2016-01-01

    Plant cold acclimation (CA) is a genetically complex phenomenon involving gene regulation and expression. Little is known about the cascading pattern of gene regulatroy network and the link between genes and metabolites during CA. Dendrobium officinale (DOKM) is an important medicinal and ornamental plant and hypersensitive to low temperature. Here, we used the large scale metabolomic and transcriptomic technologies to reveal the response to CA in DOKM seedlings based on the physiological profile analyses. Lowering temperature from 4 to –2°C resulted in significant increase (P antioxidant activities and electrolyte leakage (EL) during 24 h. The fitness CA piont of 0°C and control (20°C) during 20 h were firstly obtained according to physiological analyses. Subsequently, massive transcriptome and metabolome reprogramming occurred during CA. The gene to metabolite network demonstrated that the CA associated processes are highly energy demanding through activating hydrolysis of sugars, amino acids catabolism and citrate cycle. The expression levels of 2,767 genes were significantly affected by CA, including 153-fold upregulation of CBF transcription factor, 56-fold upregulation of MAPKKK16 protein kinase. Moreover, the gene interaction and regulation network analysis revealed that the CA as an active process, was regulated at the transcriptional, post-transcriptional, translational and post-translational levels. Our findings highligted a comprehensive regulatory mechanism including cold signal transduction, transcriptional regulation, and gene expression, which contributes a deeper understanding of the highly complex regulatory program during CA in DOKM. Some marker genes identified in DOKM seedlings will allow us to understand the role of each individual during CA by further functional analyses. PMID:27877182

  7. Global usability

    CERN Document Server

    Douglas, Ian

    2011-01-01

    The concept of usability has become an increasingly important consideration in the design of all kinds of technology. As more products are aimed at global markets and developed through internationally distributed teams, usability design needs to be addressed in global terms. Interest in usability as a design issue and specialist area of research and education has developed steadily in North America and Europe since the 1980's. However, it is only over the last ten years that it has emerged as a global concern. Global Usability provides an introduction to the important issues in globalizing des

  8. Global Kinetic Analysis of Mammalian E3 Reveals pH-dependent NAD+/NADH Regulation, Physiological Kinetic Reversibility, and Catalytic Optimum.

    Science.gov (United States)

    Moxley, Michael A; Beard, Daniel A; Bazil, Jason N

    2016-02-05

    Mammalian E3 is an essential mitochondrial enzyme responsible for catalyzing the terminal reaction in the oxidative catabolism of several metabolites. E3 is a key regulator of metabolic fuel selection as a component of the pyruvate dehydrogenase complex (PDHc). E3 regulates PDHc activity by altering the affinity of pyruvate dehydrogenase kinase, an inhibitor of the enzyme complex, through changes in reduction and acetylation state of lipoamide moieties set by the NAD(+)/NADH ratio. Thus, an accurate kinetic model of E3 is needed to predict overall mammalian PDHc activity. Here, we have combined numerous literature data sets and new equilibrium spectroscopic experiments with a multitude of independently collected forward and reverse steady-state kinetic assays using pig heart E3. The latter kinetic assays demonstrate a pH-dependent transition of NAD(+) activation to inhibition, shown here, to our knowledge, for the first time in a single consistent data set. Experimental data were analyzed to yield a thermodynamically constrained four-redox-state model of E3 that simulates pH-dependent activation/inhibition and active site redox states for various conditions. The developed model was used to determine substrate/product conditions that give maximal E3 rates and show that, due to non-Michaelis-Menten behavior, the maximal flux is different compared with the classically defined kcat.

  9. Global RNA Fold and Molecular Recognition for a pfl Riboswitch Bound to ZMP, a Master Regulator of One-Carbon Metabolism.

    Science.gov (United States)

    Ren, Aiming; Rajashankar, Kanagalaghatta R; Patel, Dinshaw J

    2015-08-04

    ZTP, the pyrophosphorylated analog of ZMP (5-amino-4-imidazole carboxamide ribose-5'-monophosphate), was identified as an alarmone that senses 10-formyl-tetrahydroflate deficiency in bacteria. Recently, a pfl riboswitch was identified that selectively binds ZMP and regulates genes associated with purine biosynthesis and one-carbon metabolism. We report on the structure of the ZMP-bound Thermosinus carboxydivorans pfl riboswitch sensing domain, thereby defining the pseudoknot-based tertiary RNA fold, the binding-pocket architecture, and principles underlying ligand recognition specificity. Molecular recognition involves shape complementarity, with the ZMP 5-amino and carboxamide groups paired with the Watson-Crick edge of an invariant uracil, and the imidazole ring sandwiched between guanines, while the sugar hydroxyls form intermolecular hydrogen bond contacts. The burial of the ZMP base and ribose moieties, together with unanticipated coordination of the carboxamide by Mg(2+), contrasts with exposure of the 5'-phosphate to solvent. Our studies highlight the principles underlying RNA-based recognition of ZMP, a master regulator of one-carbon metabolism.

  10. 芸苔EPSPs基因cDNA的克隆和表达载体的构建%The Cloning and Analysis of the cDNA of EPSPs Gene from Brassica campestris

    Institute of Scientific and Technical Information of China (English)

    游大慧; 骞宇; 王健美; 郭经宇; 杨毅; 李旭锋

    2004-01-01

    作者从芸苔(Brassica campestris)中用RT-PCR方法获得了EPSPs基因的cDNA.与其他物种中的EPSPs基因进行了比对和分析发现:芸苔EPSPs基因的cDNA与欧洲油菜的同源性最高,为93%,与水稻同源性最低,仅为64%.将芸苔EPSPs的ORF片段插入到GTK融合表达载体中,为EPSPs的原核表达奠定了基础.

  11. 紫菜薹色素的提取及其理化性质研究%Studies on the Extraction and Stability of Purple Pigment from Brassica Campestris

    Institute of Scientific and Technical Information of China (English)

    雷钢铁; 陈效兰

    2001-01-01

    以紫菜薹为原料,用30%乙醇溶液浸提制得紫菜薹色素,并对其理化性质进行了研究。结果表示该色素在弱酸性条件下,具有较好的稳定性,在食品工业中有一定的开发利用价值。%The extraction of purple pigment from Brassica campestris and its stability were studied. The pigment is stable under acidic condition, worth to develop in food industry.

  12. MoSET1 (Histone H3K4 Methyltransferase in Magnaporthe oryzae Regulates Global Gene Expression during Infection-Related Morphogenesis.

    Directory of Open Access Journals (Sweden)

    Kieu Thi Minh Pham

    2015-07-01

    Full Text Available Here we report the genetic analyses of histone lysine methyltransferase (KMT genes in the phytopathogenic fungus Magnaporthe oryzae. Eight putative M. oryzae KMT genes were targeted for gene disruption by homologous recombination. Phenotypic assays revealed that the eight KMTs were involved in various infection processes at varying degrees. Moset1 disruptants (Δmoset1 impaired in histone H3 lysine 4 methylation (H3K4me showed the most severe defects in infection-related morphogenesis, including conidiation and appressorium formation. Consequently, Δmoset1 lost pathogenicity on wheat host plants, thus indicating that H3K4me is an important epigenetic mark for infection-related gene expression in M. oryzae. Interestingly, appressorium formation was greatly restored in the Δmoset1 mutants by exogenous addition of cAMP or of the cutin monomer, 16-hydroxypalmitic acid. The Δmoset1 mutants were still infectious on the super-susceptible barley cultivar Nigrate. These results suggested that MoSET1 plays roles in various aspects of infection, including signal perception and overcoming host-specific resistance. However, since Δmoset1 was also impaired in vegetative growth, the impact of MoSET1 on gene regulation was not infection specific. ChIP-seq analysis of H3K4 di- and tri-methylation (H3K4me2/me3 and MoSET1 protein during infection-related morphogenesis, together with RNA-seq analysis of the Δmoset1 mutant, led to the following conclusions: 1 Approximately 5% of M. oryzae genes showed significant changes in H3K4-me2 or -me3 abundance during infection-related morphogenesis. 2 In general, H3K4-me2 and -me3 abundance was positively associated with active transcription. 3 Lack of MoSET1 methyltransferase, however, resulted in up-regulation of a significant portion of the M. oryzae genes in the vegetative mycelia (1,491 genes, and during infection-related morphogenesis (1,385 genes, indicating that MoSET1 has a role in gene repression either

  13. Global Mindset

    DEFF Research Database (Denmark)

    Sørensen, Olav Jull

    2016-01-01

    The concept of Global Mindset (GM) – the way to think about the global reality – is on the agenda of multinational companies concomitant with the increase in global complexity, uncertainty and diversity. In spite of a number of studies, the concept is still fluid and far from a managerial...... way of thinking about the global business reality. The other extreme is a GM as an organizational capability and process with a GM in a continuous state of becoming – and thus in a continuously alignment with a dynamic context. In addition, we argue for what we call “situational capabilities”, i...

  14. Final Report [Regulated mRNA Decay in Arabidopsis: A global analysis of differential control by hormones and the circadian clock

    Energy Technology Data Exchange (ETDEWEB)

    Green, Pamela J.

    2010-03-18

    The long-term goal of this research was to better understand the influence of mRNA stability on gene regulation, particularly in response to hormones and the circadian clock. The primary aim of this project was to examine this using DNA microarrays, small RNA analysis and other approaches. We accomplished these objectives, although we were only able to detect small changes in mRNA stability in response to these stimuli. However, the work also contributed to a major breakthrough allowing the identification of small RNAs on a genomic scale in eukaryotes. Moreover, the project prompted us to develop a new way to analyze mRNA decay genome wide. Thus, the research was hugely successful beyond our objectives.

  15. Global regulation of virulence and the stress response by CsrA in the highly adapted human gastric pathogen Helicobacter pylori

    DEFF Research Database (Denmark)

    Barnard, F.M.; Loughlin, M.F.; Fainberg, H.P.

    2004-01-01

    -induced transcriptional responses of napA and ahpC, the acid induction of napA, cagA, vacA, the urease operon, and fur, as well as the heat shock responses of napA, groESL and hspR. Although the level of napA transcript was higher in the csrA mutant, its stability was similar in the wild-type and mutant strains, and less...... NapA protein was produced in the mutant strain. Finally, H. pylori strains deficient in the production of CsrA were significantly attenuated for virulence in a mouse model of infection. This work provides evidence that CsrA has a broad role in regulating the physiology of H. pylori in response...

  16. Beta-lactams interfering with PBP1 induce Panton-Valentine leukocidin expression by triggering sarA and rot global regulators of Staphylococcus aureus.

    Science.gov (United States)

    Dumitrescu, Oana; Choudhury, Priya; Boisset, Sandrine; Badiou, Cédric; Bes, Michele; Benito, Yvonne; Wolz, Christiane; Vandenesch, François; Etienne, Jerome; Cheung, Ambrose L; Bowden, Maria Gabriela; Lina, Gerard

    2011-07-01

    Previous articles reported that beta-lactam antibiotics increase the expression of Staphylococcus aureus Panton-Valentine leukocidin (PVL) by activating its transcription. We investigated the mechanisms underlying the inductor effect of beta-lactams on PVL expression by determining targets and regulatory pathways possibly implicated in this process. We measured PVL production in the presence of oxacillin (nonselective), imipenem (penicillin-binding protein 1 [PBP1] selective), cefotaxime (PBP2 selective), cefaclore (PBP3 selective), and cefoxitin (PBP4 selective). In vitro, we observed increased PVL production consistent with luk-PV mRNA levels that were 20 to 25 times higher for community-acquired methicillin-resistant S. aureus (CA-MRSA) cultures treated with PBP1-binding oxacillin and imipenem than for cultures treated with other beta-lactams or no antibiotic at all. This effect was also observed in vivo, with increased PVL mRNA levels in lung tissues from CA-MRSA-infected mice treated with imipenem but not cefoxitin. To confirm the involvement of PBP1 inhibition in this pathway, PBP1 depletion by use of an inducible pbp1 antisense RNA showed a dose-dependent relationship between the level of pbp1 antisense RNA and the luk-PV mRNA level. Upon imipenem treatment of exponential-phase cultures, we observed an increased sarA mRNA level after 30 min of incubation followed by a decreased rot mRNA level after 1 to 4 h of incubation. Unlike the agr and saeRS positive regulators, which were nonessential for PVL induction by beta-lactams, the sarA (positive) and rot (negative) PVL regulators were necessary for PVL induction by imipenem. Our results suggest that antibiotics binding to PBP1 increase PVL expression by modulating sarA and rot, which are essential mediators of the inductor effect of beta-lactams on PVL expression.

  17. 菜心组织培养技术初探%Preliminary Study on Tissue Culture Technique in Brassica campestris L. ssp. chinensis var. utilis

    Institute of Scientific and Technical Information of China (English)

    乔燕春; 黄红弟; 张华; 李光光; 郑岩松; 刘自珠

    2014-01-01

    In order to establish rapid propagation system of Brassica campestris ssp. chinensis var. utilis, the anthers as explants were in vitro cultured. The results showed that the anthers should be selected from unopened buds, which stigma was slightly higher than petal, and most of microspores were at uninucleate stage. The pollen germination rate was not high, and that in autumn and winter was higher than that in summer. The callus induction medium for anthers was MS+1.0 mg L-1 KT+1.0 mg L-1 2,4-D+3%sugar+6 g L-1 agar+8%coconut milk (pH=5.8). The adventitious bud differentiation medium was MS+2.0 mg L-1 6-BA+0.5 mg L-1 NAA+1.0 g L-1 active carbon+2%sugar+6 g L-1 agar or MS+2.0 mg L-1 ZT+0.5 mg L-1 IAA+0.5 g L-1 AgNO3+1.0 g L-1 active carbon+2%sugar+6 g L-1 agar (pH=5.8). The adventitious bud rate inducted from anthers was 36.7%, and the regeneration plantlet rate was low owing to adventitious buds browning, while the regeneration plantlet rate reached to 80%induced from cotyledon or petioles.%为建立菜心(Brassica campestris ssp. chinensis var. utilis)的快繁技术体系,以花药和子叶-子叶柄为外植体进行组织培养研究。结果表明,花药培养以选取未开放的花蕾为宜,且花柱略高于花瓣,此时小孢子多数处于单核靠边期。菜心花粉的萌发率不高,且秋冬季的花粉比夏季的萌发率高。菜心花药愈伤组织诱导培养基为:MS+1.0 mg L-1 KT+1.0 mg L-12,4-D+3%糖+6 g L-1琼脂+8%椰乳,不定芽诱导培养基为:MS+2.0 mg L-16-BA+0.5 mg L-1 NAA+1.0 g L-1活性炭+2%糖+6 g L-1琼脂或MS+2.0 mg L-1 ZT+0.5 mg L-1 IAA+0.5 g L-1 AgNO3+1.0 g L-1活性炭+2%糖+6 g L-1琼脂。花药培养的不定芽诱导率为36.7%,不定芽培养出现褐化现象,不能形成再生植株;而以子叶-子叶柄为外植体培养获得的植株再生率可达80%。

  18. Desenvolvimento vegetativo de Mentha campestris Schur e produção de mentol em diferentes espaçamentos de plantio e épocas de colheita Vegetative development of Mentha campestris Schur and menthol production in different row spaces and harvest times

    Directory of Open Access Journals (Sweden)

    R. Monteiro

    2011-01-01

    Full Text Available A produção de óleos essenciais nas plantas aromáticas é influenciada por fatores bióticos e abióticos. A demanda por esses produtos tem aumentado, sendo os óleos essenciais do gênero Mentha de grande interesse nas indústrias farmacêutica, de cosméticos, alimentícia e agrícola, principalmente em função do composto mentol. Esse trabalho teve como objetivo avaliar o efeito de três espaçamentos de plantio (0,60 x 0,15 m; 0,60 x 0,30 m e 0,60 x 0,45 m e duas épocas de colheita (60 e 90 dias após o plantio na espécie Mentha campestris Schur. O experimento foi conduzido no Centro de Estações Experimentais do Canguiri-UFPR, em Pinhais-PR, no período de janeiro a abril de 2008. O delineamento utilizado foi o de blocos ao acaso em esquema de parcelas subdivididas. Houve diferença significativa para todas as variáveis analisadas. As massas secas de folhas, ramos e total foram maiores que na primeira época. Para a biomassa seca de folhas foram observados maiores valores no menor espaçamento de plantio. O rendimento de óleo essencial foi maior na segunda época de colheita e nos espaçamentos maiores. A produtividade do óleo também foi maior na segunda época de colheita, porém no espaçamento mais adensado. Pode-se concluir como recomendação para M. campestris Schur o espaçamento 0,60 x 0,15 m e colheita aos 90 dias, por terem atingido maior biomassa, rendimento de óleo essencial e produtividade de mentol por hectare.Essential oil production in aromatic plants is influenced by biotic and abiotic factors. The demand for these products has increased, and essential oils from the genus Mentha have been of great interest for pharmaceutical, cosmetic, food and agronomic industries, especially because of the compound menthol. This study aimed to evaluate the effect of three row spaces (0.60 x 0.15 m; 0.60 x 0.30 m and 0.60 x 0.45 m and two harvest times (60 and 90 days after planting on the species Mentha campestris Schur. The

  19. Real time expression of ACC oxidase and PR-protein genes mediated by Methylobacterium spp. in tomato plants challenged with Xanthomonas campestris pv. vesicatoria.

    Science.gov (United States)

    Yim, W J; Kim, K Y; Lee, Y W; Sundaram, S P; Lee, Y; Sa, T M

    2014-07-15

    Biotic stress like pathogenic infection increases ethylene biosynthesis in plants and ethylene inhibitors are known to alleviate the severity of plant disease incidence. This study aimed to reduce the bacterial spot disease incidence in tomato plants caused by Xanthomonas campestris pv. vesicatoria (XCV) by modulating stress ethylene with 1-aminocyclopropane-1-carboxylate (ACC) deaminase activity of Methylobacterium strains. Under greenhouse condition, Methylobacterium strains inoculated and pathogen challenged tomato plants had low ethylene emission compared to pathogen infected ones. ACC accumulation and ACC oxidase (ACO) activity with ACO related gene expression increased in XCV infected tomato plants over Methylobacterium strains inoculated plants. Among the Methylobacterium spp., CBMB12 resulted lowest ACO related gene expression (1.46 Normalized Fold Expression), whereas CBMB20 had high gene expression (3.42 Normalized Fold Expression) in pathogen challenged tomato. But a significant increase in ACO gene expression (7.09 Normalized Fold Expression) was observed in the bacterial pathogen infected plants. In contrast, Methylobacterium strains enhanced β-1,3-glucanase and phenylalanine ammonia-lyase (PAL) enzyme activities in pathogen challenged tomato plants. The respective increase in β-1,3-glucanase related gene expressions due to CBMB12, CBMB15, and CBMB20 strains were 66.3, 25.5 and 10.4% higher over pathogen infected plants. Similarly, PAL gene expression was high with 0.67 and 0.30 Normalized Fold Expression, in pathogen challenged tomato plants inoculated with CBMB12 and CBMB15 strains. The results suggest that ethylene is a crucial factor in bacterial spot disease incidence and that methylobacteria with ACC deaminase activity can reduce the disease severity with ultimate pathogenesis-related protein increase in tomato.

  20. Characterization of a novel gene, BcMF7, that is expressed preferentially in pollen of Brassica campestris L. ssp. Chinensis Makino

    Institute of Scientific and Technical Information of China (English)

    HUANG Li; CAO JiaShu; ZHANG YuChao; YE YiQun

    2007-01-01

    Pollen formation is important for plant sexual reproduction, To identify the genes that are involved in pollen formation, we performed the genome-wide transcriptional profiling in the flower buds of both male meiotic cytokinesis (mmc) mutant and its wild-type plants of Brassica campestris L. ssp. chinensis, syn. B. rapa L. ssp. chinensis, cDNA-amplified fragment length polymorphism (cDNA-AFLP) analysis showed that the mmc mutation resulted in changes in expression of a variety of genes. BcMF7, a transcript-derived fragment (TDF) accumulated in the wild-type flower buds was further characterized.The BcMF7 gene has 1161 bp in length with two introns. The full-length BcMF7 cDNA has 609 bp in length and encodes a protein of 129 amino acids. The deduced amino acid sequence of BcMF7 protein shares no similarity to any function-known protein in Swiss-Prot database, but has 8 protein kinase C phosphorylation sites, 2 casein kinase Ⅱ phosphorylation sites, 2 tyrosine kinase phosphorylation sites,2 N-glycosylation sites and 2 N-myristoylation sites. Spatial and temporal expression patterns analysis showed that BcMF7 was expressed exclusively in pollen. The expression signal of BcMF7 was first detected at the tetrad stage of microspore development, reached a peak level at the uninucleate stage,and decreased to a slightly low level at the mature pollen stage. All these results show that BcMF7 may play a certain role in the signal transduction during pollen development.

  1. Cloning and Characterization of the Microspore Development-Related Gene BcMF2 in Chinese Cabbage Pak-Choi (Brassica campestris L. ssp. chinensis Makino)

    Institute of Scientific and Technical Information of China (English)

    Yong-Qin WANG; Wan-Zhi YE; Jia-Shu CAO; Xiao-Lin YU; Xun XIANG; Gang LU

    2005-01-01

    For the sake of providing some important information relevant to the study of the molecular mechanism of genic male sterility in plants, gene differential expression in flower buds at different developmental stages, as well as in rosette leaves, florescence leaves, and scapes was analyzed using cDNA amplified fragment length polymorphism (cDNA-AFLP) in the genic male sterile A and fertile B line of Chinese cabbage pak-choi. Following amplification of 125 pairs of primer combinations, 11 differential fragments were obtained, of which eight were from the B line and the other three were from the A line. Of 11 differential fragments, four were verified by Northern hybridization that were expressed preferentially in fertile flower buds. Results of GenBank BLAST showed that one fragment was with unknown function,whereas the other fragments have strong nucleotide sequence similarities with the polygalacturonase (PG)gene, the pectinesterase (PE) gene, and the polygalacturonase inhibitory protein (PGIP4) gene. Only fulllength cDNA from the differential fragment BcMF-A18T16-1 was amplified by rapid amplification of cDNA ends (RACE) and Northern analysis showed that this fragment was expressed only in medium and largesized flower buds of the B line. The full-length cDNA, designated as BcMF2 (Brassica campestris Male Fertile 2), was 1 485 bp long and was composed of a 1 263-bp open reading frame, which had 83% nucleotide similarity to a PG gene from Arabidopsis encoding polygalacturonase. Analysis of the basic structure of the protein revealed that it had one polygalacturonase active site (RVTCGPGHGLSVGS) at 256th site of amino acids and was classified as being a member of family 28 of the glycosyl hydrolases. The role of the BcMF2 gene on microspore development is discussed in the present paper.

  2. Characterization of a novel gene, BcMF7,that is expressed preferentially in pollen of Brassica campestris L.ssp. chinensis Makino

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Pollen formation is important for plant sexual reproduction. To identify the genes that are involved in pollen formation, we performed the genome-wide transcriptional profiling in the flower buds of both male meiotic cytokinesis (mmc) mutant and its wild-type plants of Brassica campestris L. ssp. chinen-sis, syn. B. rapa L. ssp. chinensis. cDNA-amplified fragment length polymorphism (cDNA-AFLP) analy-sis showed that the mmc mutation resulted in changes in expression of a variety of genes. BcMF7, a transcript-derived fragment (TDF) accumulated in the wild-type flower buds was further characterized. The BcMF7 gene has 1161 bp in length with two introns. The full-length BcMF7 cDNA has 609 bp in length and encodes a protein of 129 amino acids. The deduced amino acid sequence of BcMF7 protein shares no similarity to any function-known protein in Swiss-Prot database, but has 8 protein kinase C phosphorylation sites, 2 casein kinase II phosphorylation sites, 2 tyrosine kinase phosphorylation sites, 2 N-glycosylation sites and 2 N-myristoylation sites. Spatial and temporal expression patterns analysis showed that BcMF7 was expressed exclusively in pollen. The expression signal of BcMF7 was first detected at the tetrad stage of microspore development, reached a peak level at the uninucleate stage, and decreased to a slightly low level at the mature pollen stage. All these results show that BcMF7 may play a certain role in the signal transduction during pollen development.

  3. Gendering Globalization

    DEFF Research Database (Denmark)

    2009-01-01

    The current global financial situation bluntly and brutally brings home the fact that the global and local are closely connected in times of opportunity as well as crises. The articles in this issue of Asia Insights are about ontra-action between Asia, particularly China, and the Nordic countries...

  4. Global fordeling

    DEFF Research Database (Denmark)

    Busck, Ole Gunni

    2015-01-01

    Øgede globale økologiske distributionskonflikter i kraft af neoliberal globalisering drevet af kravet om økonomisk vækst......Øgede globale økologiske distributionskonflikter i kraft af neoliberal globalisering drevet af kravet om økonomisk vækst...

  5. Global Uddannelse

    DEFF Research Database (Denmark)

    Jensen, Niels Rosendal

    Antologien handler om "demokratiproblemer i den globale sammenhæng" (del I) og "demokratiproblemer i uddannelse og for de offentligt ansatte" (del II), bundet sammen af et mellemstykke, der rækker ud mod begge poler både det globale og det lokale ved at knytte det til forholdet mellem marked...

  6. Identification and Cloning of a Novel Gene Involved in EPS Biosynthesis of Xanthomonas campestris pv. campestris%野油菜黄单胞菌野油菜致病变种中一个与EPS合成有关的新基因的鉴定

    Institute of Scientific and Technical Information of China (English)

    陆光涛; 唐纪良; 何勇强; 陈保善; 唐东阶

    2003-01-01

    利用转座子Tn5gusA5对野油菜黄单胞菌野油菜致病变种(Xanthomonas campestris pv. campestris,简称Xcc)野生型菌株8004进行诱变,分离到一批胞外多糖(EPS)合成减少的突变体.采用TAIL-PCR(thermal asymmetric interlaced PCR)分析突变体的Tn5gusA5插入位点,发现其中一株编号为151D09的突变体的插入位点位于Xcc 8004菌株的基因组编号为XC3695的ORF内,该ORF功能尚未见报道.序列分析表明,该ORF演绎的编码产物与Serratia marcescens的kdtX基因和Klebsiella pneumoniae的waaE基因演绎的编码产物分别具有52%和50%的相似性,并具有第2家族糖基转移酶的功能域, 因此暂将该ORF命名为waxE基因.用同源双交换方法构建了waxE基因的缺失突变体,并采用PCR和Southern杂交的方法对突变体进行了验证.waxE基因缺失突变体在营养丰富培养基的生长繁殖不受影响,但其EPS产量与野生型菌株8004相比,降低35%左右,并且一段PCR合成的包含waxE基因的DNA片段能反式互补waxE基因缺失突变体,恢复缺失突变体的EPS产量,表明Xcc waxE基因与EPS的生物合成有关.

  7. Global Mindsets

    DEFF Research Database (Denmark)

    . The second section provides and examines empirical evidence about how different organizations in different parts of the world practice global mindset in different aspects of their managerial functions. The book supports and complements research publications that come from strategy and management areas......Global Mindsets: Exploration and Perspectives seeks to tackle a topic that is relatively new in research and practice, and is considered by many to be critical for firms seeking to conduct global business. It argues that multiple mindsets exist (across and within organizations), that they operate...... in a global context, and that they are dynamic and undergo change and action. Part of the mindset(s) may depend upon place, situation and context where individuals and organizations operate. The book will examine the notion of "mindset" is situational and dynamic, especially in a global setting, why...

  8. Co-regulation of Iron Metabolism and Virulence Associated Functions by Iron and XibR, a Novel Iron Binding Transcription Factor, in the Plant Pathogen Xanthomonas.

    Science.gov (United States)

    Pandey, Sheo Shankar; Patnana, Pradeep Kumar; Lomada, Santosh Kumar; Tomar, Archana; Chatterjee, Subhadeep

    2016-11-01

    Abilities of bacterial pathogens to adapt to the iron limitation present in hosts is critical to their virulence. Bacterial pathogens have evolved diverse strategies to coordinately regulate iron metabolism and virulence associated functions to maintain iron homeostasis in response to changing iron availability in the environment. In many bacteria the ferric uptake regulator (Fur) functions as transcription factor that utilize ferrous form of iron as cofactor to regulate transcription of iron metabolism and many cellular functions. However, mechanisms of fine-tuning and coordinated regulation of virulence associated function beyond iron and Fur-Fe2+ remain undefined. In this study, we show that a novel transcriptional regulator XibR (named Xanthomonas iron binding regulator) of the NtrC family, is required for fine-tuning and co-coordinately regulating the expression of several iron regulated genes and virulence associated functions in phytopathogen Xanthomonas campestris pv. campestris (Xcc). Genome wide expression analysis of iron-starvation stimulon and XibR regulon, GUS assays, genetic and functional studies of xibR mutant revealed that XibR positively regulates functions involved in iron storage and uptake, chemotaxis, motility and negatively regulates siderophore production, in response to iron. Furthermore, chromatin immunoprecipitation followed by quantitative real-time PCR indicated that iron promoted binding of the XibR to the upstream regulatory sequence of operon's involved in chemotaxis and motility. Circular dichroism spectroscopy showed that purified XibR bound ferric form of iron. Electrophoretic mobility shift assay revealed that iron positively affected the binding of XibR to the upstream regulatory sequences of the target virulence genes, an effect that was reversed by ferric iron chelator deferoxamine. Taken together, these data revealed that how XibR coordinately regulates virulence associated and iron metabolism functions in Xanthomonads in

  9. Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.

    Science.gov (United States)

    Simino, Jeannette; Shi, Gang; Bis, Joshua C; Chasman, Daniel I; Ehret, Georg B; Gu, Xiangjun; Guo, Xiuqing; Hwang, Shih-Jen; Sijbrands, Eric; Smith, Albert V; Verwoert, Germaine C; Bragg-Gresham, Jennifer L; Cadby, Gemma; Chen, Peng; Cheng, Ching-Yu; Corre, Tanguy; de Boer, Rudolf A; Goel, Anuj; Johnson, Toby; Khor, Chiea-Chuen; Lluís-Ganella, Carla; Luan, Jian'an; Lyytikäinen, Leo-Pekka; Nolte, Ilja M; Sim, Xueling; Sõber, Siim; van der Most, Peter J; Verweij, Niek; Zhao, Jing Hua; Amin, Najaf; Boerwinkle, Eric; Bouchard, Claude; Dehghan, Abbas; Eiriksdottir, Gudny; Elosua, Roberto; Franco, Oscar H; Gieger, Christian; Harris, Tamara B; Hercberg, Serge; Hofman, Albert; James, Alan L; Johnson, Andrew D; Kähönen, Mika; Khaw, Kay-Tee; Kutalik, Zoltan; Larson, Martin G; Launer, Lenore J; Li, Guo; Liu, Jianjun; Liu, Kiang; Morrison, Alanna C; Navis, Gerjan; Ong, Rick Twee-Hee; Papanicolau, George J; Penninx, Brenda W; Psaty, Bruce M; Raffel, Leslie J; Raitakari, Olli T; Rice, Kenneth; Rivadeneira, Fernando; Rose, Lynda M; Sanna, Serena; Scott, Robert A; Siscovick, David S; Stolk, Ronald P; Uitterlinden, Andre G; Vaidya, Dhananjay; van der Klauw, Melanie M; Vasan, Ramachandran S; Vithana, Eranga Nishanthie; Völker, Uwe; Völzke, Henry; Watkins, Hugh; Young, Terri L; Aung, Tin; Bochud, Murielle; Farrall, Martin; Hartman, Catharina A; Laan, Maris; Lakatta, Edward G; Lehtimäki, Terho; Loos, Ruth J F; Lucas, Gavin; Meneton, Pierre; Palmer, Lyle J; Rettig, Rainer; Snieder, Harold; Tai, E Shyong; Teo, Yik-Ying; van der Harst, Pim; Wareham, Nicholas J; Wijmenga, Cisca; Wong, Tien Yin; Fornage, Myriam; Gudnason, Vilmundur; Levy, Daniel; Palmas, Walter; Ridker, Paul M; Rotter, Jerome I; van Duijn, Cornelia M; Witteman, Jacqueline C M; Chakravarti, Aravinda; Rao, Dabeeru C

    2014-07-03

    Although age-dependent effects on blood pressure (BP) have been reported, they have not been systematically investigated in large-scale genome-wide association studies (GWASs). We leveraged the infrastructure of three well-established consortia (CHARGE, GBPgen, and ICBP) and a nonstandard approach (age stratification and metaregression) to conduct a genome-wide search of common variants with age-dependent effects on systolic (SBP), diastolic (DBP), mean arterial (MAP), and pulse (PP) pressure. In a two-staged design using 99,241 individuals of European ancestry, we identified 20 genome-wide significant (p ≤ 5 × 10(-8)) loci by using joint tests of the SNP main effect and SNP-age interaction. Nine of the significant loci demonstrated nominal evidence of age-dependent effects on BP by tests of the interactions alone. Index SNPs in the EHBP1L1 (DBP and MAP), CASZ1 (SBP and MAP), and GOSR2 (PP) loci exhibited the largest age interactions, with opposite directions of effect in the young versus the old. The changes in the genetic effects over time were small but nonnegligible (up to 1.58 mm Hg over 60 years). The EHBP1L1 locus was discovered through gene-age interactions only in whites but had DBP main effects replicated (p = 8.3 × 10(-4)) in 8,682 Asians from Singapore, indicating potential interethnic heterogeneity. A secondary analysis revealed 22 loci with evidence of age-specific effects (e.g., only in 20 to 29-year-olds). Age can be used to select samples with larger genetic effect sizes and more homogenous phenotypes, which may increase statistical power. Age-dependent effects identified through novel statistical approaches can provide insight into the biology and temporal regulation underlying BP associations.

  10. Cellular inhibitors of apoptosis are global regulators of NF-κB and MAPK activation by members of the TNF family of receptors.

    Science.gov (United States)

    Varfolomeev, Eugene; Goncharov, Tatiana; Maecker, Heather; Zobel, Kerry; Kömüves, László G; Deshayes, Kurt; Vucic, Domagoj

    2012-03-20

    Tumor necrosis factor (TNF) family members are essential for the development and proper functioning of the immune system. TNF receptor (TNFR) signaling is mediated through the assembly of protein signaling complexes that activate the nuclear factor κB (NF-κB) and mitogen-activated protein kinase (MAPK) pathways in a ubiquitin-dependent manner. The cellular inhibitor of apoptosis (c-IAP) proteins c-IAP1 and c-IAP2 are E3 ubiquitin ligases that are recruited to TNFR signaling complexes through their constitutive association with the adaptor protein TNFR-associated factor 2 (TRAF2). We demonstrated that c-IAP1 and c-IAP2 were required for canonical activation of NF-κB and MAPK by members of the TNFR family. c-IAPs were required for the recruitment of inhibitor of κB kinase β (IKKβ), the IKK regulatory subunit NF-κB essential modulator (NEMO), and RBCK1/Hoil1-interacting protein (HOIP) to TNFR signaling complexes and the induction of gene expression by TNF family members. In contrast, TNFRs that stimulated the noncanonical NF-κB pathway triggered translocation of c-IAPs, TRAF2, and TRAF3 from the cytosol to membrane fractions, which led to their proteasomal and lysosomal degradation. Finally, we established that signaling by B cell-activating factor receptor 3 induced the cytosolic depletion of TRAF3, which enabled noncanonical NF-κB activation. These results define c-IAP proteins as critical regulators of the activation of NF-κB and MAPK signaling pathways by members of the TNFR superfamily.

  11. Crystal structure of Pseudomonas aeruginosa RsaL bound to promoter DNA reaffirms its role as a global regulator involved in quorum-sensing

    Science.gov (United States)

    Kang, Huaping; Gan, Jianhua; Zhao, Jingru; Kong, Weina; Zhang, Jing; zhu, Miao; Li, Fan; Song, Yaqin; Qin, Jin; Liang, Haihua

    2017-01-01

    Pseudomonas aeruginosa possesses at least three well-defined quorum-sensing (QS) (las, rhl and pqs) systems that control a variety of important functions including virulence. RsaL is a QS repressor that reduces QS signal production and ensures homeostasis by functioning in opposition to LasR. However, its regulatory role in signal homeostasis remains elusive. Here, we conducted a ChIP-seq assay and revealed that RsaL bound to two new targets, the intergenic regions of PA2228/PA2229 and pqsH/cdpR, which are required for PQS synthesis. Deletion of rsaL reduced transcription of pqsH and cdpR, thus decreasing PQS signal production. The ΔrsaL strain exhibited increased pyocyanin production and reduced biofilm formation, which are dependent on CdpR or PqsH activity. In addition, we solved the structure of the RsaL–DNA complex at a 2.4 Å resolution. Although the overall sequence similarity is quite low, RsaL folds into a HTH-like structure, which is conserved among many transcriptional regulators. Complementation results of the rsaL knockout cells with different rsaL mutants further confirmed the critical role of the DNA-binding residues (including Arg20, Gln27, Gln38, Gly35, Ser37 and Ser42) that are essential for DNA binding. Our findings reveal new targets of RsaL and provide insight into the detailed characterization of the RsaL–DNA interaction. PMID:27924027

  12. Research Progress of the Global Regulator IrrE in Deinococcus radiodurans%耐辐射异常球菌全局调控蛋白IrrE的研究进展

    Institute of Scientific and Technical Information of China (English)

    陈震; 周正富; 张维; 陈明; 宋渊; 林敏

    2013-01-01

      全局调控蛋白 IrrE 是异常球菌属中所特有的一种 DNA 损伤修复调节因子,可以显著提高细胞受到损伤时各修复基因的表达。在目前已经完成测序的异常球菌中共发现7种不同来源的 IrrE 蛋白,经序列比对与同源建模,发现其氨基酸序列相似性较高且具有相同的保守结构域,这可能预示了其功能上的相似性。此外,irrE 在大肠杆菌及油菜中表达后,能明显增强宿主的耐盐性,体现了较高应用价值。本综述介绍了异常球菌属及其全局调控蛋白 IrrE 的发现、结构与相关功能,分析与展望了该调控蛋白潜在的应用前景。%  The unique global regulator IrrE, found in Deinococcus, can up-regulate the expression of DNA repair genes in response to DNA damage. Seven types of IrrE protein had been identified in different strains of Deinococcus, the results of sequence alignment and homology modeling suggest that they share a high identity in amino acid sequence and have the same conserved protein regions, which may indicate the similarity in their functions. Besides, when gene irrE expressed in E. coli and B. napus, the salt tolerance of both hosts can be significantly enhanced, which show a very promising future in application. This review introduced the basic traits of Deinococcus and the discovery, structure and related functions of the global regulator IrrE, then we analyzed and prospected its potential application.

  13. 进一步推进武汉市洪山菜薹产业化实施方案%Implementation Plan on Promoting Industrial Development of Hongshan Brassica campestris in Wuhan

    Institute of Scientific and Technical Information of China (English)

    程耀明; 朱林耀; 马幼菊; 姜正军

    2013-01-01

      武汉市洪山菜薹实施了品牌保护和开发,实现了市场化和产业化运作,但仍存在原产地环境质量不断恶化、提纯复壮工作未形成长效机制、企业龙头作用未能充分发挥等问题。今后,应从土壤环境质量、品种资源保护、市场开发等各方面齐心协力,确保洪山菜薹产业持续健康发展。%Though we implemented the brand protection and development strategy, market-oriented and industrial operation in the production of Hongshan Brassica campestris, many problems were still existed, such as worsening of environment, unsustainable developing of purification and rejuvenation work and failing to give full play to the leading role of enterprises. Therefore we should improve the quality of soil and environment, protect species resources and develop new markets as well, to ensure the sustainable and healthy development of Hongshan B. campestris industry.

  14. BcMF26a and BcMF26b Are Duplicated Polygalacturonase Genes with Divergent Expression Patterns and Functions in Pollen Development and Pollen Tube Formation in Brassica campestris.

    Directory of Open Access Journals (Sweden)

    Meiling Lyu

    Full Text Available Polygalacturonase (PG is one of the cell wall hydrolytic enzymes involving in pectin degradation. A comparison of two highly conserved duplicated PG genes, namely, Brassica campestris Male Fertility 26a (BcMF26a and BcMF26b, revealed the different features of their expression patterns and functions. We found that these two genes were orthologous genes of At4g33440, and they originated from a chromosomal segmental duplication. Although structurally similar, their regulatory and intron sequences largely diverged. QRT-PCR analysis showed that the expression level of BcMF26b was higher than that of BcMF26a in almost all the tested organs and tissues in Brassica campestris. Promoter activity analysis showed that, at reproductive development stages, BcMF26b promoter was active in tapetum, pollen grains, and pistils, whereas BcMF26a promoter was only active in pistils. In the subcellular localization experiment, BcMF26a and BcMF26b proteins could be localized to the cell wall. When the two genes were co-inhibited, pollen intine was formed abnormally and pollen tubes could not grow or stretch. Moreover, the knockout mutants of At4g33440 delayed the growth of pollen tubes. Therefore, BcMF26a/b can participate in the construction of pollen wall by modulating intine information and BcMF26b may play a major role in co-inhibiting transformed plants.

  15. Global marketing and globalization miths

    OpenAIRE

    2012-01-01

    Global marketing and advertising: understanding cultural paradoxes, de Marieke de Mooij, 3rd ed. Thousand Oaks, CA. Sage Publications, 2010, 322p. Global marketing and advertising: understanding cultural paradoxes, de Marieke de Mooij, 3rd ed. Thousand Oaks, CA. Sage Publications, 2010, 322p.

  16. The Xanthomonas campestris effector protein XopDXcc8004 triggers plant disease tolerance by targeting DELLA proteins.

    Science.gov (United States)

    Tan, Leitao; Rong, Wei; Luo, Hongli; Chen, Yinhua; He, Chaozu

    2014-11-01

    Plants protect themselves from the harmful effects of pathogens by resistance and tolerance. Disease resistance, which eliminates pathogens, can be modulated by bacterial type III effectors. Little is known about whether disease tolerance, which sustains host fitness with a given pathogen burden, is regulated by effectors. Here, we examined the effects of the Xanthomonas effector protein XopDXcc8004 on plant disease defenses by constructing knockout and complemented Xanthomonas strains, and performing inoculation studies in radish (Raphanus sativus L. var. radiculus XiaoJinZhong) and Arabidopsis plants. XopDXcc8004 suppresses disease symptoms without changing bacterial titers in infected leaves. In Arabidopsis, XopDXcc8004 delays the hormone gibberellin (GA)-mediated degradation of RGA (repressor of ga1-3), one of five DELLA proteins that repress GA signaling and promote plant tolerance under biotic and abiotic stresses. The ERF-associated amphiphilic repression (EAR) motif-containing region of XopDXcc8004 interacts with the DELLA domain of RGA and might interfere with the GA-induced binding of GID1, a GA receptor, to RGA. The EAR motif was found to be present in a number of plant transcriptional regulators. Thus, our data suggest that bacterial pathogens might have evolved effectors, which probably mimic host components, to initiate disease tolerance and enhance their survival.

  17. Going Global

    DEFF Research Database (Denmark)

    Harrington, Brooke

    2015-01-01

    This study links theories of relationality and institutional change to deepen understanding of professionals’ role in globalization. In previous institutional research, it has been conventional to treat professionals as agents of firms or transnational organizations, and institutional change...... environment. It also broadens the model of agency to include invention and improvisation by individual professionals, as a counterpart to collective strategic action. The argument is based on data from a 16-nation study exploring the emergence of a particular ‘globalized localism’: the transformation...... to specify a new, more detailed model of the ways local practices and ideas develop into global institutions....

  18. Global Rome

    DEFF Research Database (Denmark)

    Is 21st-century Rome a global city? Is it part of Europe's core or periphery? This volume examines the “real city” beyond Rome's historical center, exploring the diversity and challenges of life in neighborhoods affected by immigration, neoliberalism, formal urban planning, and grassroots social...... movements. The contributors engage with themes of contemporary urban studies–the global city, the self-made city, alternative modernities, capital cities and nations, urban change from below, and sustainability. Global Rome serves as a provocative introduction to the Eternal City and makes an original...

  19. 3种接种方法对十字花科黑腐病菌Xcc8004菌株在拟南芥Col-0上致病力的影响%Effect of 3 Inoculation Methods on the Virulence of Xanthomonas campestris pathovar campestris strain 8004 on Arabidopsis thaliana Col-0

    Institute of Scientific and Technical Information of China (English)

    梅雄; 李振江; 张慧; 唐纪良; 唐东阶

    2011-01-01

    Xanthomonas campestris pathovar campestris (Xcc) is the causal agent of black rot disease of cruciferous crops, and is a model strain for studying the molecular mechanisms of plant-microbe interactions. Xcc infects almost all the members of crucifer family (Brassicaceae) such as cabbage, radish and cauliflower, and the model plant Arabidopsis thaliana. Since the whole genome of Arabidopsis thaliana has been sequenced, which has became the best host plant for studying the molecular basis for the host defense against Xcc. However, the method for testing the pathogenicity of Xcc on A rabidopsis thaliana has not been well established so far. For this, in this study, the response ofthe wild type A rabidopsis thaliana ecoype Colombia 0 (Col-0) to the infection by Xcc strain 8004 (Xcc8004)was respectively tested by using leaf-infiltration, leaf-clipping and leaf main vein-piercing method. The results show that Xcc8004 can cause disease on the leaf of Arabidopsis thaliana Col-0 by leaf-infiltration, but not by leaf-clipping or leaf central vein-piercing. These results reveal that the pathogenicity of Xcc 8004 in Arabidopsis is strongly affected by the inoculation method used, and leaf-infiltration is a suitable method but leaf-clipping or leaf central vein-piercing is not a suitable method for which. In addition, a simple and efficient Arabidopsis thaliana planting method was established in this study.%十字花科黑腐病菌(Xanthomonas campestris pathovar campestris,Xcc)是引起十字花科植物黑腐病的病原菌,也是研究寄主与病原微生物相互作用分子机理的模式菌之一.Xcc可以感染白菜、萝卜和甘蓝等十字花科农作物,也可以感染重要的模式植物拟南芥(Arabidopsis thaliana).由于拟南芥的全基因组测序已经完成,因此,拟南芥是研究寄主植物对Xcc浸染的防卫反应的分子机理的最理想的寄主材料.但是,到现在为止,一套完善的在拟南芥上进行Xcc致病检测的实验系统还

  20. Global Derivatives

    DEFF Research Database (Denmark)

    Andersen, Torben Juul

    ." - Steen Parsholt, Chairman and CEO, Aon Nordic Region. "Andersen has done a wonderful job of developing a comprehensive text that deals with risk management in global markets. I would recommend this book to any student or businessman who has a need to better understand the risks and risk management...... management practice. Of particular note is the global and integrated approach chosen in this book which should be of special interest to aspiring managers active in global and international markets." - Dr Jean-Pierre Zigrand, Lecturer in Finance, London School of Economics, UK. More than 90 per cent...... management situations. Its key features include: derivatives are introduced in a global market perspective; describes major derivative pricing models for practical use, extending these principles to valuation of real options; practical applications of derivative instruments are richly illustrated...

  1. Global Managers

    DEFF Research Database (Denmark)

    Barakat, Livia L.; Lorenz, Melanie P.; Ramsey, Jase R.

    2016-01-01

    urpose: – The purpose of this paper is to examine the effect of cultural intelligence (CQ) on the job performance of global managers. Design/methodology/approach: – In total, 332 global managers were surveyed from multinational companies operating in Brazil. The mediating effect of job satisfaction...... was tested on the CQ-job performance relationship. Findings: – The findings suggest that job satisfaction transmits the effect of CQ to job performance, such that global managers high in CQ exhibit more job satisfaction in an international setting, and therefore perform better at their jobs. Practical...... implications: – Results imply that global managers should increase their CQ in order to improve their job satisfaction and ultimately perform better in an international context. Originality/value: – The authors make three primary contributions to the international business literature. First, the authors...

  2. Global warming

    CERN Document Server

    Hulme, M

    1998-01-01

    Global warming-like deforestation, the ozone hole and the loss of species- has become one of the late 20the century icons of global environmental damage. The threat, is not the reality, of such a global climate change has motivated governments. businesses and environmental organisations, to take serious action ot try and achieve serious control of the future climate. This culminated last December in Kyoto in the agreement for legally-binding climate protocol. In this series of three lectures I will provide a perspective on the phenomenon of global warming that accepts the scientific basis for our concern, but one that also recognises the dynamic interaction between climate and society that has always exited The future will be no different. The challenge of global warning is not to pretend it is not happening (as with some pressure groups), nor to pretend it threatens global civilisation (as with other pressure groups), and it is not even a challenge to try and stop it from happening-we are too far down the ro...

  3. Crystal Structures of Xanthomonas campestris OleA Reveal Features That Promote Head-to-Head Condensation of Two Long-Chain Fatty Acids

    Energy Technology Data Exchange (ETDEWEB)

    Goblirsch, Brandon R.; Frias, Janice A.; Wackett, Lawrence P.; Wilmot, Carrie M. (UMM)

    2012-10-25

    OleA is a thiolase superfamily enzyme that has been shown to catalyze the condensation of two long-chain fatty acyl-coenzyme A (CoA) substrates. The enzyme is part of a larger gene cluster responsible for generating long-chain olefin products, a potential biofuel precursor. In thiolase superfamily enzymes, catalysis is achieved via a ping-pong mechanism. The first substrate forms a covalent intermediate with an active site cysteine that is followed by reaction with the second substrate. For OleA, this conjugation proceeds by a nondecarboxylative Claisen condensation. The OleA from Xanthomonas campestris has been crystallized and its structure determined, along with inhibitor-bound and xenon-derivatized structures, to improve our understanding of substrate positioning in the context of enzyme turnover. OleA is the first characterized thiolase superfamily member that has two long-chain alkyl substrates that need to be bound simultaneously and therefore uniquely requires an additional alkyl binding channel. The location of the fatty acid biosynthesis inhibitor, cerulenin, that possesses an alkyl chain length in the range of known OleA substrates, in conjunction with a single xenon binding site, leads to the putative assignment of this novel alkyl binding channel. Structural overlays between the OleA homologues, 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) synthase and the fatty acid biosynthesis enzyme FabH, allow assignment of the two remaining channels: one for the thioester-containing pantetheinate arm and the second for the alkyl group of one substrate. A short {beta}-hairpin region is ordered in only one of the crystal forms, and that may suggest open and closed states relevant for substrate binding. Cys143 is the conserved catalytic cysteine within the superfamily, and the site of alkylation by cerulenin. The alkylated structure suggests that a glutamic acid residue (Glu117{beta}) likely promotes Claisen condensation by acting as the catalytic base. Unexpectedly

  4. Crystal Structures of Xanthomonas campestris OleA Reveal Features That Promote Head-to-Head Condensation of Two Long-Chain Fatty Acids

    Energy Technology Data Exchange (ETDEWEB)

    Goblirsch, BR; Frias, JA; Wackett, LP; Wilmot, CM

    2012-05-22

    OleA is a thiolase superfamily enzyme that has been shown to catalyze the condensation of two long-chain fatty acylcoenzyme A (CoA) substrates. The enzyme is part of a larger gene cluster responsible for generating long-chain olefin products, a potential biofuel precursor. In thiolase superfamily enzymes, catalysis is achieved via a ping-pong mechanism. The first substrate forms a covalent intermediate with an active site cysteine that is followed by reaction with the second substrate. For OleA, this conjugation proceeds by a nondecarboxylative Claisen condensation. The OleA from Xanthomonas campestris has been crystallized and its structure determined, along with inhibitor-bound and xenon-derivatized structures, to improve our understanding of substrate positioning in the context of enzyme turnover. OleA is the first characterized thiolase superfamily member that has two long-chain alkyl substrates that need to be bound simultaneously and therefore uniquely requires an additional alkyl binding channel. The location of the fatty acid biosynthesis inhibitor, cerulenin, that possesses an alkyl chain length in the range of known OleA substrates, in conjunction with a single xenon binding site, leads to the putative assignment of this novel alkyl binding channel. Structural overlays between the OleA homologues, 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) synthase and the fatty acid biosynthesis enzyme FabH, allow assignment of the two remaining channels: one for the thioester-containing pantetheinate arm and the second for the alkyl group of one substrate. A short beta-hairpin region is ordered in only one of the crystal forms, and that may suggest open and closed states relevant for substrate binding. Cys143 is the conserved catalytic cysteine within the superfamily, and the site of alkylation by cerulenin. The alkylated structure suggests that a glutamic acid residue (Glu117 beta) likely promotes Claisen condensation by acting as the catalytic base. Unexpectedly, Glu117

  5. Reação de clones de videira a Xanthomonas campestris pv. viticola, baseada nos componentes epidemiológicos do cancro bacteriano

    Directory of Open Access Journals (Sweden)

    Nascimento Ana Rosa Peixoto

    2006-01-01

    Full Text Available O cancro bacteriano, causado por Xanthomonas campestris pv. viticola (Xcv, é a doença bacteriana mais importante da videira na região do Submédio São Francisco. A reação de 20 clones de videira, sendo 13 de copa e sete de porta-enxerto, foi avaliada quanto à resistência ao patógeno, em casa de vegetação. As plantas foram inoculadas com a suspensão do isolado Xcv1 (A570=108UFC mL-1, incubadas em casa de vegetação e observadas diariamente quanto aos componentes epidemiológicos do cancro bacteriano: período de incubação, incidência de folhas com sintomas, incidência de folhas com cancro, severidade da doença, taxa de progresso da incidência da doença, área abaixo da curva de progresso da severidade da doença. Todos os clones foram suscetíveis ao patógeno, embora diferindo significativamente entre si (P=0,05 para a maioria das variáveis analisadas. Em geral, 'Brasil' apresentou os maiores níveis de doença para todas as variáveis testadas, enquanto'Isabel' e 'Paulsen 1103' destacaram-se ao propiciarem os maiores valores de período de incubação e os menores valores de incidência de folhas com sintomas, com cancros, severidade da doença, taxa de progresso de incidência da doença e área abaixo da curva de progresso da severidade da doença, indicando grande potencial de utilização em programas de melhoramento genético e manejo integrado. As correlações significativas (P=0,05 verificadas entre as variáveis estudadas indicam que qualquer delas pode ser utilizada em pesquisas envolvendo reação de clones ao cancro bacteriano da videira. Quando considerado o conjunto dos componentes epidemiológicos, o agrupamento pelo método UPGMA (agrupamento aos pares pela média aritmética não ponderada permitiu a separação dos clones de copa e porta-enxerto em três grupos de similaridade cada.

  6. Genetic analyses of agronomic and seed quality traits of synthetic oilseed Brassica napus produced from interspecific hybridization of B. campestris and B. oleracea

    Indian Academy of Sciences (India)

    Guoqing Zhang; Weijun Zhou

    2006-04-01

    The heritability, the number of segregating genes and the type of gene interaction of nine agronomic traits were analysed based on F2 populations of synthetic oilseed Brassica napus produced from interspecific hybridization of B. campestris and B. oleracea through ovary culture. The nine traits—plant height, stem width, number of branches, length of main raceme, number of pods per plant, number of seeds per pod, length of pod, seed weight per plant and 1000-seed weight—had heritabilities of 0.927, 0.215, 0.172, 0.381, 0.360, 0.972, 0.952, 0.516 and 0.987 respectively, while the mean numbers of controlling genes for these characters were 7.4, 10.4, 9.9, 12.9, 11.5, 21.7, 20.5, 19.8 and 6.4 respectively. According to estimated coefficients of skewness and kurtosis of the traits tested, no significant gene interaction was found for plant height, stem width, number of branches, length of main raceme, number of seeds per pod and 1000-seed weight. Seed yield per plant is an important target for oilseed production. In partial correlation analysis, number of pods per plant, number of seeds per pod and 1000-seed weight were positively correlated with seed yield per plant. On the other hand, length of pod was negatively correlated ($r = -0.69$) with seed yield per plant. Other agronomic characters had no significant correlation to seed yield per plant. In this experiment, the linear regressions of seed yield per plant and other agronomic traits were also analysed. The linear regression equation was $y = 0.074x_{8} + 1.819x_{9} + 6.72x_{12} - 60.78 (R^{2} = 0.993)$, where $x_{8}$, $x_{9}$ and $x_{12}$ represent number of pods per plant, number of seeds per pod and 1000-seed weight respectively. The experiment also showed that erucic acid and oil contents of seeds from F2 plants were lower than those of their maternal parents. However, glucosinolate content was higher than that of the maternal plants. As for protein content, similar results were found in the F2 plants and

  7. Arabidopsis HFR1 is a potential nuclear substrate regulated by the Xanthomonas type III effector XopD(Xcc8004).

    Science.gov (United States)

    Tan, Choon Meng; Li, Meng-Ying; Yang, Pei-Yun; Chang, Shu Heng; Ho, Yi-Ping; Lin, Hong; Deng, Wen-Ling; Yang, Jun-Yi

    2015-01-01

    XopDXcc8004, a type III effector of Xanthomonas campestris pv. campestris (Xcc) 8004, is considered a shorter version of the XopD, which lacks the N-terminal domain. To understand the functions of XopDXcc8004, in planta, a transgenic approach combined with inducible promoter to analyze the effects of XopDXcc8004 in Arabidopsis was done. Here, the expression of XopDXcc8004, in Arabidopsis elicited the accumulation of host defense-response genes. These molecular changes were dependent on salicylic acid and correlated with lesion-mimic phenotypes observed in XVE::XopDXcc8004 transgenic plants. Moreover, XopDXcc8004 was able to desumoylate HFR1, a basic helix-loop-helix transcription factor involved in photomorphogenesis, through SUMO protease activity. Interestingly, the hfr1-201 mutant increased the expression of host defense-response genes and displayed a resistance phenotype to Xcc8004. These data suggest that HFR1 is involved in plant innate immunity and is potentially regulated by XopDXcc8004.

  8. Arabidopsis HFR1 Is a Potential Nuclear Substrate Regulated by the Xanthomonas Type III Effector XopDXcc8004

    Science.gov (United States)

    Tan, Choon Meng; Li, Meng-Ying; Yang, Pei-Yun; Chang, Shu Heng; Ho, Yi-Ping; Lin, Hong; Deng, Wen-Ling; Yang, Jun-Yi

    2015-01-01

    XopDXcc8004, a type III effector of Xanthomonas campestris pv. campestris (Xcc) 8004, is considered a shorter version of the XopD, which lacks the N-terminal domain. To understand the functions of XopDXcc8004, in planta, a transgenic approach combined with inducible promoter to analyze the effects of XopDXcc8004 in Arabidopsis was done. Here, the expression of XopDXcc8004, in Arabidopsis elicited the accumulation of host defense-response genes. These molecular changes were dependent on salicylic acid and correlated with lesion-mimic phenotypes observed in XVE::XopDXcc8004 transgenic plants. Moreover, XopDXcc8004 was able to desumoylate HFR1, a basic helix-loop-helix transcription factor involved in photomorphogenesis, through SUMO protease activity. Interestingly, the hfr1-201 mutant increased the expression of host defense-response genes and displayed a resistance phenotype to Xcc8004. These data suggest that HFR1 is involved in plant innate immunity and is potentially regulated by XopDXcc8004. PMID:25647296

  9. Arabidopsis HFR1 is a potential nuclear substrate regulated by the Xanthomonas type III effector XopD(Xcc8004.

    Directory of Open Access Journals (Sweden)

    Choon Meng Tan

    Full Text Available XopDXcc8004, a type III effector of Xanthomonas campestris pv. campestris (Xcc 8004, is considered a shorter version of the XopD, which lacks the N-terminal domain. To understand the functions of XopDXcc8004, in planta, a transgenic approach combined with inducible promoter to analyze the effects of XopDXcc8004 in Arabidopsis was done. Here, the expression of XopDXcc8004, in Arabidopsis elicited the accumulation of host defense-response genes. These molecular changes were dependent on salicylic acid and correlated with lesion-mimic phenotypes observed in XVE::XopDXcc8004 transgenic plants. Moreover, XopDXcc8004 was able to desumoylate HFR1, a basic helix-loop-helix transcription factor involved in photomorphogenesis, through SUMO protease activity. Interestingly, the hfr1-201 mutant increased the expression of host defense-response genes and displayed a resistance phenotype to Xcc8004. These data suggest that HFR1 is involved in plant innate immunity and is potentially regulated by XopDXcc8004.

  10. Global Inequality

    DEFF Research Database (Denmark)

    Niño-Zarazúa, Miguel; Roope, Laurence; Tarp, Finn

    2016-01-01

    This paper measures trends in global interpersonal inequality during 1975–2010 using data from the most recent version of the World Income Inequality Database (WIID). The picture that emerges using ‘absolute,’ and even ‘centrist’ measures of inequality, is very different from the results obtained...... using standard ‘relative’ inequality measures such as the Gini coefficient or Coefficient of Variation. Relative global inequality has declined substantially over the decades. In contrast, ‘absolute’ inequality, as captured by the Standard Deviation and Absolute Gini, has increased considerably...... and unabated. Like these ‘absolute’ measures, our ‘centrist’ inequality indicators, the Krtscha measure and an intermediate Gini, also register a pronounced increase in global inequality, albeit, in the case of the latter, with a decline during 2005 to 2010. A critical question posed by our findings is whether...

  11. Global Programs

    Science.gov (United States)

    Lindberg Christensen, Lars; Russo, P.

    2009-05-01

    IYA2009 is a global collaboration between almost 140 nations and more than 50 international organisations sharing the same vision. Besides the common brand, mission, vision and goals, IAU established eleven cornerstones programmes to support the different IYA2009 stakeholder to organize events, activities under a common umbrella. These are global activities centred on specific themes and are aligned with IYA2009's main goals. Whether it is the support and promotion of women in astronomy, the preservation of dark-sky sites around the world or educating and explaining the workings of the Universe to millions, the eleven Cornerstones are key elements in the success of IYA2009. However, the process of implementing global projects across cultural boundaries is challenging and needs central coordination to preserve the pre-established goals. During this talk we will examine the ups and downs of coordinating such a project and present an overview of the principal achievements for the Cornerstones so far.

  12. Another globalization

    Directory of Open Access Journals (Sweden)

    Prof. Ph.D. Ion Bucur

    2007-05-01

    Full Text Available Finding the anachronisms and the failures of the present globalization, as well as the vitiated system of world-wide government, has stimulated the debates regarding the identification of a more equitable form of globalization to favor the acceleration of the economic increase and the reduction of poverty.The deficiency of the present international economic institutions, especially the lack of transparency and democratic responsibility, claims back with acuteness the reformation of the architecture of the international institutional system and the promotion of those economical policies which must ensure the stability world-wide economy and the amelioration of the international equity.

  13. Global transcription regulation of RK2 plasmids: a case study in the combined use of dynamical mathematical models and statistical inference for integration of experimental data and hypothesis exploration

    Directory of Open Access Journals (Sweden)

    Thomas Christopher M

    2011-07-01

    Full Text Available Abstract Background IncP-1 plasmids are broad host range plasmids that have been found in clinical and environmental bacteria. They often carry genes for antibiotic resistance or catabolic pathways. The archetypal IncP-1 plasmid RK2 is a well-characterized biological system, with a fully sequenced and annotated genome and wide range of experimental measurements. Its central control operon, encoding two global regulators KorA and KorB, is a natural example of a negatively self-regulated operon. To increase our understanding of the regulation of this operon, we have constructed a dynamical mathematical model using Ordinary Differential Equations, and employed a Bayesian inference scheme, Markov Chain Monte Carlo (MCMC using the Metropolis-Hastings algorithm, as a way of integrating experimental measurements and a priori knowledge. We also compared MCMC and Metabolic Control Analysis (MCA as approaches for determining the sensitivity of model parameters. Results We identified two distinct sets of parameter values, with different biological interpretations, that fit and explain the experimental data. This allowed us to highlight the proportion of repressor protein as dimers as a key experimental measurement defining the dynamics of the system. Analysis of joint posterior distributions led to the identification of correlations between parameters for protein synthesis and partial repression by KorA or KorB dimers, indicating the necessary use of joint posteriors for correct parameter estimation. Using MCA, we demonstrated that the system is highly sensitive to the growth rate but insensitive to repressor monomerization rates in their selected value regions; the latter outcome was also confirmed by MCMC. Finally, by examining a series of different model refinements for partial repression by KorA or KorB dimers alone, we showed that a model including partial repression by KorA and KorB was most compatible with existing experimental data. Conclusions We

  14. Global Games

    NARCIS (Netherlands)

    van Bottenburg, Maarten

    2001-01-01

    Why is soccer the sport of choice in South America, while baseball has soared to popularity in the Carribean? How did cricket become India's national sport, while China is a stronghold of table tennis? In Global Games, Maarten van Bottenburg asserts that it is the 'hidden competition' of social and

  15. Global glance

    Institute of Scientific and Technical Information of China (English)

    2012-01-01

    Molycorp Announces Successful Close of Neo Materials Acquisition Molycorp, Inc. announced on 11 June 2012 that its acquisition of Canadian-based Neo Material Technologies Inc. has officially closed, creating a global rare earth leader with a combination of a world-class rare earth resource, ultra-high-purity rare earth processing capabilities, and full 'mine-to-magnetics' vertical integration.

  16. Justice Globalism

    NARCIS (Netherlands)

    Wilson, Erin; Steger, Manfred; Siracusa, Joseph; Battersby, Paul

    2014-01-01

    The pursuit of a global order founded on universal rules extends beyond economics into the normative spheres of law, politics and justice. Justice globalists claim universal principles applicable to all societies irrespective of religion or ideology. This view privileges human rights, democracy and

  17. Global overeksponering

    DEFF Research Database (Denmark)

    Rosenstand, Claus A. Foss

    2007-01-01

    - idet min lillebror er blandt de anholdte; og mine forældre derfor skulle være blandt de skyldige. Hvilket har fået mig til at fare i blækhuset, med en alternativ forklaringsmodel, der ikke handler om skyld. Kulturen omkring Ungdomshuset er globalt orienteret, og derfor meget sensible overfor global...... forandringer. Den globale orientering kommer blandt andet til udtryk i det relativt store internationale netværk, som bakker de unge op i deres protester - enten ved tilstedeværelse i København eller andre sympatiaktioner. Siden den 11. september, 2001, er globale realiteter blevet eksponeret i massemedierne...... også sig selv og sin omverden igennem en global optik. Ungdommen af i dag er som børn vokset op i et samfund og dannelseskultur, der ikke har været globalt orienteret, hvor demokratiske værdier som frihed, lighed, menneskerettigheder her hersket i det socialdemokratiske projekt om sammenhængskraft. Og...

  18. A global view of regulations affecting nanomaterials

    DEFF Research Database (Denmark)

    Hansen, Steffen Foss

    2010-01-01

    The 2000s have been characterized by an unprecedented exploration into research and development of nanotechnology and nanomaterials. Despite a slow start, new regulatory initiatives are popping up like mushrooms internationally. Many of these initiatives have yet to materialize themselves...

  19. Putative promoter region of type Ⅲ effector gene avrACXcc8O04 in Xanthomonas campestris pv.campestris%十字花科黑腐病菌Ⅲ型效应物基因avrACXcc8004推测的启动子区

    Institute of Scientific and Technical Information of China (English)

    蒋国凤; 吴秋菊; 梁晓夏; 杨丽超; 阳丽艳; 王凛; 吴小建; 姜伯乐

    2014-01-01

    [目的]十字花科黑腐病菌(Xanthomonas campestris pv.campestris,Xcc),能侵染所有十字花科植物,引起黑腐病.Xcc通过Ⅲ型分泌系统(Type Ⅲ Secretion System,T3 SS)将Ⅲ型效应物(T3SS effector,T3 SE)蛋白直接转运到植物细胞内,T3SEs对于病原菌致病性至关重要.许多已鉴定的T3SEs基因的启动子区都存在植物诱导启动子盒(Plant-inducible promoter,PIP-box)和-10 box,但PIP-box及-10 box与经典的启动子-10区及-35区之间的关系如何未见报道,-10 box的序列保守性如何也未见报道.本研究旨在对T3SE基因avrACXcc8004推测的启动子区进行研究.[方法]首先,通过5'RACE确定其转录起始位点,接着用Fusion PCR对-10 box TACGTT序列中倒数第二个碱基T进行点突变为A/C/G,即:TACGAT、TACGCT和TACGGT,构建GUS融合报告菌株,定量测定GUS酶活.[结果]5'RACE结果显示avrACXcc8004的转录起始位点为A,对比分析得到启动子的-35区位于PIP-box之后8 bp处,而-10区与-10 box重叠;avrA CXcc8004启动子区的PIP-box和-35区、-10 box的整个模体为:TTCAC-N15-TTCGC-N8-TTGATG-N18-TACGTT.最后,GUS定量测定结果表明,突变为C时(TACGCT)的菌株的GUS酶活最高,突变为G时(TACGGT)的酶活增高最少.在△hrpX和△hrpG中的GUS酶活均比在Xcc 8004中有显著的降低.[结论]Xcc的T3 SE基因PIP-box 与-35区前后相衔,-10 box即-10区,-10 box对于avrACXcc8004的转录活性有较大的影响,-10 box突变前后avrACxcc8004均受HrpG和HrpX正向调控.

  20. BRICS COUNTRIES IN GLOBALIZATION PROCESSES

    Directory of Open Access Journals (Sweden)

    Sergey Lunev

    2014-01-01

    Full Text Available Globalization remains the crucial trend of global development, and it is especially evident in economic sphere. Apart from it, political, informational and cultural globalizations are actively discussed. The rapid development of global market, initiated by the West, paradoxically, fostered redistribution of economic influence towards the non-Western countries and primarily to Asia. Therefore, the record of participation of BRICS states (China and India, primarily in global processes is instructive. These two countries achieve significant developmental successes due to their integration in world economy without abandoning active participation of their government in regulation of economic and social activities. Analysis of the strategies adopted of other BRICS countries could appear quite useful for Russia. 

  1. 3种接种方法对十字花科黑腐病菌Xcc8004菌株在拟南芥Col-0上致病力的影响%Effect of 3 Inoculation Methods on the Virulence ofXanthomonas campestris pathovar campestris strain 8004 on A rab idops is thaliana Col-0

    Institute of Scientific and Technical Information of China (English)

    梅雄; 李振江; 张慧; 唐纪良; 唐东阶

    2011-01-01

    Xanthomonas campestris pathovar campestris (Xcc) is the causal agent of black rot disease ofcruciferous crops, and is a model strain for studying the molecular mechanisms of plant-microbe interactions. Xcc infects almost all the members of crucifer family (Brclssicaceae) such as cabbage, radish and cauliflower, and the model plant A r- abidopsis thaliana. Since the whole genome ofArabidopsis thaliana has been sequenced, which has became the best host plant for studying the molecular basis for the host defense against Xcc. However, the method for testing the pathogenicity of Xcc on A rabidopsis thaliana has not been well established so far. For this, in this study, the re- sponse of the wild typeA rabidopsis thaliana ecoype Colombia 0 (Col-0) to the infection byXcc strain 8004 (Xcc8004) was respectively tested by using leaf-infiltration, leaf-clipping and leaf main vein-piercing method. The results show that Xcc8004 can cause disease on the leaf of A rabidopsis thaliana Col-0 by leaf-infiltration, but not by leaf-clipping or leaf central vein-piercing. These results reveal that the pathogenicity of Xcc 8004 in Arabidopsis is strongly affected by the inoculation method used, and leaf-infiltration is a suitable method but leaf-clipping or leaf central vein-piercing is not a suitable method for which. In addition, a simple and efficient Arabidopsis thaliana planting method was established in this study.%十字花科黑腐病菌(Xanthomonas campestris pathovar carnpestris,Xcc)是引起十字花科植物黑腐病的病原菌,也是研究寄主与病原微生物相互作用分子机理的模式菌之一。Xcc可以感染白菜、萝卜和甘蓝等十字花科农作物,也可以感染重要的模式植物拟南芥(AroJoidopsisthaliana)。由于拟南芥的全基因组测序已经完成,因此,拟南芥是研究寄主植物对Xcc浸染的防卫反应的分子机理的最理想的寄主材料。但是,到现在为止,

  2. Effects of Copper Stress on Seedling Growth of Brassica campestris ssp. chinenses (L.) Makino%铜胁迫对小白菜幼苗生长的影响

    Institute of Scientific and Technical Information of China (English)

    韩志平; 张海霞; 赵智灵; 杜清洁

    2015-01-01

    以北京新一号四季小白菜为材料,研究了 CuSO4胁迫对基质栽培小白菜幼苗生长、光合色素含量和膜脂过氧化的影响。试验结果表明,较低浓度 CuSO4使株高、叶片数、最大叶长、最大叶宽、根长及地上部、根系鲜质量和干质量显著增加,较高浓度 CuSO4则显著抑制了各形态指标和生物量积累;20μmol/L CuSO4使叶绿素 a、叶绿素 b 和类胡萝卜素含量显著增加,较高浓度 CuSO4则使各光合色素含量显著降低;随 CuSO4浓度提高,叶片质膜透性显著增加,抗坏血酸含量则呈先升高后降低的趋势。说明低浓度 CuSO4处理对小白菜生长有一定的促进作用,高浓度CuSO4胁迫则使光合能力降低,膜脂过氧化程度加剧,最终造成小白菜生长受到显著抑制。%Taking Beijing New No.1 as material, the experiment studied the effects of CuSO4 stress on the growth, photosynthetic pigment contents and membrane lipid peroxidation of Brassica campestris ssp. chinenses (L.) Makino cultivated in mixed substrate. The results showed that, the plant height, leaf number, maximum leaf length, maximum leaf width, root length and shoot and root fresh weight and dry weight of B. campestris ssp. chinenses (L.) Makino were significantly increased under lower CuSO4 concentration treatments, while all morphological indicators and biomass accumulation were significantly inhibited under higher CuSO4 concentration treatments. The chlorophyll a, chlorophyll b and carotenoid contents were significantly increased when the CuSO4 concentration was 20 μmol/L, while all photosynthetic pigment contents were significantly reduced under higher CuSO4 concentration treatments. with CuSO4 concentration increased, membrane permeability of leaves was significantly increased, and ascorbic acid content was increased firstly and then decreased. The results indicated that lower CuSO4 concentrations could promote the growth of campestris ssp

  3. Functional characterization of annotated trehalose-6-phosphate synthase gene in Xanthmonas campestris%野油菜黄单胞菌中6-磷酸海藻糖合成酶注释基因的功能鉴定

    Institute of Scientific and Technical Information of China (English)

    姚裕群; 谌立峰; 梁晓夏; 姜伟; 姜伯乐; 唐纪良

    2007-01-01

    6-磷酸海藻糖在微生物碳代谢调节及抗逆生理中起着极其重要的作用.在野油菜黄单胞菌野油菜致病变种(Xanthomonas campestris pv.campestris,Xcc)8004菌株的基因组中,XC1076注释为6-磷酸海藻糖合成酶.利用突变和表型检测技术,对 XC1076进行功能鉴定,结果显示,XC1076的Tn5gusA5插入突变体006B12,在含3% NaCl的NYGB培养基中生长明显缓慢,在含葡萄糖为惟一碳源的NCM培养基中几乎不能生长,反式互补能够基本恢复野生型表型,这说明XC1076与碳代谢调控和抗高渗有关.这些表型实验结果揭示,XC1076的ORF编码的蛋白具有6-磷酸海藻糖合成酶活性.致病生化因子检测显示,XC1076与Xcc胞外酶和胞外多糖的分泌无关.

  4. Governing Global Capital

    DEFF Research Database (Denmark)

    Harrington, Brooke

    an institutionalist perspective, the paper examines three ways in which wealth managers, both individually and through their professional society, influence regional competition for power and wealth: 1) by finding loopholes in existing policies that limit the global flow of capital; 2) by lobbying national......How do professions affect the configuration of political economies worldwide? This study addresses the question through interviews with members of a new transnational profession - wealth management - whose innovations are reshaping the balance of power in global finance. Wealth managers specialize...... in helping elites avoid taxes and other forms of regulation. The study documents how the means through which they achieve this objective - shifting billions in private capital wealth between Asia, Africa, India and Europe - and how this affects the balance of regional economic power. Drawing from...

  5. Glycine-aspartic _ acid-serine-leucine esterase Xcc_ est from Xanthomonas campestris pv. campestris 8004 and its esterase domain: gene expression in Escherichia coli, refolding and characterization%野油菜黄单胞菌8004甘天丝亮特征序列酯酶及其酯酶结构域在大肠杆菌中的表达,包涵体复性及性质

    Institute of Scientific and Technical Information of China (English)

    王建军; 杨柳; 曹燕萍; 郑国钧

    2009-01-01

    [目的]了解野油菜黄单胞菌(Xanthomonas campestris pv. campestris)8004 GDSL(蛋白序列中甘氨酸、天冬氨酸、丝氨酸和亮氨酸特征序列)酯酶的性质.[方法]利用PCR方法扩增Xcc _ est及其不同结构域的基因,这些基因以组氨酸标签融合蛋白的形式在大肠杆菌中获得表达.融合蛋白通过镍亲和色谱纯化.[结果]部分纯化的Xcc _ est在催化对硝基苯丁酸酯时,最适pH值为8.0,最适温度为52℃.Xcc _ est对于对硝基苯丁酸酯的Km值和Vmax值分别是47.6±4.6 μmol/L,和67.6±7.8 U/mg,Xcc _ est的酯酶结构域(Xcc _ estN1-334)对于同一底物的Km值和Vmax值分别是469.4±9.8 μmol/L和2.5±0.9 U/mg.Xcc _ est的成熟结构域(Xcc _ estN26-606)可以获得成功复性,但是成熟酯酶结构域(Xcc _ estN26-334)不能获得复性.复性后的Xcc - estN26-606底物谱较广,在室温下具有较高稳定性.[结论]复性的成熟结构域蛋白(Xcc _ estN26-606)具有一定的生物转化应用前景.%[Objective] To characterize the GDSL (glycine, aspartic acid, serine and leucine motif in protein sequence) esterase Xcc_ est from Xanthomonas campestris pv. campestris (Xcc) 8004. [Methods] Xcc _ est gene and different domains of Xcc _ est gene were PCR amplified and expressed in Escherichia coli, the HIS-Tagged fusion proteins were pttrified by Ni-NTA chromatography. [Results] The optimum pH and temperature of partly purified Xcc_ est were 8.0 and 52℃ when pNPB (4-nitrophonylbutyrate) was used as substrate. The Km and Vmax value of Xcc _ est and the passenger domain (Xcc _ estN1-334) for pNPB were 47.6±4.6 mol/L, 67.6±7.8 U/mg and 469.4 ±9.8 mol/L, 2.5±0.9 U/mg respectively. Inclusion bodies of mature domain Xcc _ est (Xcc _ estN26-606) could be refolded but inclusion bodies of the passenger domain (Xcc _ estN26-334) could not be refolded. Refolded mature domain had broad substrate spectrum and showed higher stability than Xcc_ est when stored at 25 ℃. [Conclusions

  6. The Site-Directed A184S Mutation in the HTH Domain of the Global Regulator IrrE Enhances Deinococcus radiodurans R1 Tolerance to UV Radiation and MMC Shock.

    Science.gov (United States)

    Zhang, Chen; Zhou, Zhengfu; Zhang, Wei; Chen, Zhen; Song, Yuan; Lu, Wei; Lin, Min; Chen, Ming

    2015-12-28

    IrrE is a highly conserved global regulator in the Deinococcus genus and contributes to survival from high doses of UV radiation, ionizing radiation, and desiccation. Drad-IrrE and Dgob-IrrE from Deinococcus radiodurans and Deinococcus gobiensis I-0 each share 66% sequence identity. However, Dgob-IrrE showed a stronger protection phenotype against UV radiation than Drad- IrrE in the D. radiodurans irrE-deletion mutant (ΔirrE), which may be due to amino acid residues differences around the DNA-binding HTH domain. Site-directed mutagenesis was used to generate a Drad-IrrE A184S single mutant, which has been characterized and compared with the ΔirrE mutant complemented strain with Drad-irrE, designated ΔirrE-E. The effects of the A184S mutation following UV radiation and mitomycin C (MMC) shock were determined. The A184S mutant displayed significantly increased resistance to UV radiation and MMC shock. The corresponding A184 site in Dgob-IrrE was inversely mutated, generating the S131A mutant, which exhibited a loss of resistance against UV radiation, MMC shock, and desiccation. qPCR analysis revealed that critical genes in the DNA repair system, such as recA, pprA, uvrA, and ddrB, were remarkably induced after UV radiation and MMC shock in the ΔirrE-IE and A184S mutants. These data suggested that A184S improves the ability against UV radiation and MMC shock, providing new insights into the modification of IrrE. We speculated that the serine residue may determine the efficiency of DNA binding, leading to the increased expression of IrrE-dependent genes important for protection against DNA damage.

  7. Global climate experiment; Globales Klimaexperiment

    Energy Technology Data Exchange (ETDEWEB)

    Quasching, V. [Deutsche Zentrum fuer Luft- und Raumfahrt e.V., Plataforma Solar de Almeria (Spain)

    2003-07-01

    Continued greenhouse gas emissions are part of one of our today's largest scientific experiments. Most scientists agree that anthropogenic influences are responsible for already observed climatic changes. Others demand further investigations and justify continued unlimited use of fossil energy sources. This paper describes generally accepted facts on greenhouse gas emissions and climatic change with focus on part and influence of the global energy industry. [German] Mit dem fortgesetzten Ausstoss von Treibhausgasen wird zurzeit ein globales naturwissenschaftliches Experiment betrieben. Viele Wissenschaftler sind sich einig, dass bereits beobachtete Klimaveraenderungen auf den Einfluss des Menschen zurueckzufuehren sind. Andere fordern hingegen weitere Untersuchungen und halten bis dahin eine weitere uneingeschraenkte Verwendung fossiler Energietraeger fuer gerechtfertigt. Dieser Beitrag fasst weitgehend anerkannte Fakten ueber Treibhausgasemissionen und Klimaveraenderungen zusammen und beschreibt die Rolle und den Einfluss der Energiewirtschaft.

  8. Global Noise and Global Englishes

    Directory of Open Access Journals (Sweden)

    Alastair Pennycook

    2013-09-01

    Full Text Available Global Noise: Rap and Hip-Hop Outside the USA, alluding to Tricia Rose’s US rap-music book, Black Noise, aims to do much more than merely extend the reach of the study of rap and hip-hop beyond the USA, as its subtitle might suggest. While acknowledging the importance of the work of both Rose and Potter, this collection’s editor, Tony Mitchell, contests their respective views that rap and hip-hop are essentially expressions of African-American culture, and that all forms of rap and hip-hop derive from these origins. He argues that these forms have become ‘a vehicle for global youth affiliations and a tool for reworking local iden- tity all over the world’.

  9. Global Arrays

    Energy Technology Data Exchange (ETDEWEB)

    Krishnamoorthy, Sriram; Daily, Jeffrey A.; Vishnu, Abhinav; Palmer, Bruce J.

    2015-11-01

    Global Arrays (GA) is a distributed-memory programming model that allows for shared-memory-style programming combined with one-sided communication, to create a set of tools that combine high performance with ease-of-use. GA exposes a relatively straightforward programming abstraction, while supporting fully-distributed data structures, locality of reference, and high-performance communication. GA was originally formulated in the early 1990’s to provide a communication layer for the Northwest Chemistry (NWChem) suite of chemistry modeling codes that was being developed concurrently.

  10. Globalizing Denmark

    DEFF Research Database (Denmark)

    Selmer, Jan; Lauring, Jakob

    2013-01-01

    This exploratory article examines the paradox of being open-minded while ethnocentric as expressed in Danish international management practices at the micro level. With a population of 5.4 million, Denmark is one of the smallest of the European countries. The pressure on many small advanced...... countries to keep up the process of globalization may be substantial, and the economic gains for such countries from adjusting to a more internationally integrated world economy are clear. However, in small- population economies, especially social-democratic welfare states, the internal pressure...

  11. Global teaching of global seismology

    Science.gov (United States)

    Stein, S.; Wysession, M.

    2005-12-01

    Our recent textbook, Introduction to Seismology, Earthquakes, & Earth Structure (Blackwell, 2003) is used in many countries. Part of the reason for this may be our deliberate attempt to write the book for an international audience. This effort appears in several ways. We stress seismology's long tradition of global data interchange. Our brief discussions of the science's history illustrate the contributions of scientists around the world. Perhaps most importantly, our discussions of earthquakes, tectonics, and seismic hazards take a global view. Many examples are from North America, whereas others are from other areas. Our view is that non-North American students should be exposed to North American examples that are type examples, and that North American students should be similarly exposed to examples elsewhere. For example, we illustrate how the Euler vector geometry changes a plate boundary from spreading, to strike-slip, to convergence using both the Pacific-North America boundary from the Gulf of California to Alaska and the Eurasia-Africa boundary from the Azores to the Mediterranean. We illustrate diffuse plate boundary zones using western North America, the Andes, the Himalayas, the Mediterranean, and the East Africa Rift. The subduction zone discussions examine Japan, Tonga, and Chile. We discuss significant earthquakes both in the U.S. and elsewhere, and explore hazard mitigation issues in different contexts. Both comments from foreign colleagues and our experience lecturing overseas indicate that this approach works well. Beyond the specifics of our text, we believe that such a global approach is facilitated by the international traditions of the earth sciences and the world youth culture that gives students worldwide common culture. For example, a video of the scene in New Madrid, Missouri that arose from a nonsensical earthquake prediction in 1990 elicits similar responses from American and European students.

  12. Global environmental policy; Globale Umweltpolitik

    Energy Technology Data Exchange (ETDEWEB)

    Varwick, J. (ed.)

    2008-07-01

    For some years, the interest in global environmental problems and global environmental policy increased substantially. In order to prevent a sustainable and irreversible damage of the global ecological systems, it requires an ecological restructuring of the economy of the industrial nations and a environmental compatible development in the developing countries. Under this aspect, the book under consideration dedicates itself to this problem by means of five scientific contributions: (a) The principle sustainability (Felix Ekardt); (b) Climate change as a world problem (Andreas Rechkemmer); (c) The role of the pioneer of the European Union in the international climate policy: Successes and challenges (Sebastian Oberthuer); (d) Cause for conflict water (Tobias Lindenberg); (e) Environmental political instruments in theory and practice (Johanna Reichenbach/Till Requate). Instruction practice also is concerned with a cross section topic consisting of environmental and European politics: Competent instructions concerning to the European Union - an instruction series for the secondary school I (George Wiesseno, Valentin Eck). Two forum contributions go beyond the topic: (a) Against rigid (society-)political borders in the science (Tim Engartner); (b) Elections in Hamburg - Schwarz-Gruen as new coalition model for the federation? In the column 'the current topic' Gotthard Breit reports on the protests against China on the occasion of the Olympic Games 2008. The author focuses some strangenesses in the debate and pleads for a sober view of the topic. With a report on 'the Beutelsbacher discussions' at 18th to 20th February, 2008, Timo Web finishes this book.

  13. Global trends, needs, issues.

    Science.gov (United States)

    Kieffer, R G

    1998-01-01

    Worldwide, Pharmaceutical Plant Management struggles with the competing priorities of lowering costs, rising customer expectations, more demanding government regulations, and the need to reduce cycle times especially in the introduction of new products. All of this takes place in an environment of global competition, regulatory harmonization, mergers and downsizing, and employee insecurity. Employees are expected to do more with less, work with more sophisticated equipment and processes, take more personal responsibility for quality and productivity, work in teams, etc. In summary, we are talking about CHANGE, the speed of which will accelerate in the years to come. This presentation will discuss how some pharmaceutical plants are addressing these challenges. Examples will be given in the areas of validation, process reengineering, risk analysis, role of the quality function and people. It is my contention that most of the global trends today are insufficient to meet the challenges that we face. I hope that this presentation will generate some ideas on what the global trends should be.

  14. Global warming

    Science.gov (United States)

    Houghton, John

    2005-06-01

    'Global warming' is a phrase that refers to the effect on the climate of human activities, in particular the burning of fossil fuels (coal, oil and gas) and large-scale deforestation, which cause emissions to the atmosphere of large amounts of 'greenhouse gases', of which the most important is carbon dioxide. Such gases absorb infrared radiation emitted by the Earth's surface and act as blankets over the surface keeping it warmer than it would otherwise be. Associated with this warming are changes of climate. The basic science of the 'greenhouse effect' that leads to the warming is well understood. More detailed understanding relies on numerical models of the climate that integrate the basic dynamical and physical equations describing the complete climate system. Many of the likely characteristics of the resulting changes in climate (such as more frequent heat waves, increases in rainfall, increase in frequency and intensity of many extreme climate events) can be identified. Substantial uncertainties remain in knowledge of some of the feedbacks within the climate system (that affect the overall magnitude of change) and in much of the detail of likely regional change. Because of its negative impacts on human communities (including for instance substantial sea-level rise) and on ecosystems, global warming is the most important environmental problem the world faces. Adaptation to the inevitable impacts and mitigation to reduce their magnitude are both necessary. International action is being taken by the world's scientific and political communities. Because of the need for urgent action, the greatest challenge is to move rapidly to much increased energy efficiency and to non-fossil-fuel energy sources.

  15. Global gamesmanship.

    Science.gov (United States)

    MacMillan, Ian C; van Putten, Alexander B; McGrath, Rita Gunther

    2003-05-01

    Competition among multinationals these days is likely to be a three-dimensional game of global chess: The moves an organization makes in one market are designed to achieve goals in another in ways that aren't immediately apparent to its rivals. The authors--all management professors-call this approach "competing under strategic interdependence," or CSI. And where this interdependence exists, the complexity of the situation can quickly overwhelm ordinary analysis. Indeed, most business strategists are terrible at anticipating the consequences of interdependent choices, and they're even worse at using interdependency to their advantage. In this article, the authors offer a process for mapping the competitive landscape and anticipating how your company's moves in one market can influence its competitive interactions in others. They outline the six types of CSI campaigns--onslaughts, contests, guerrilla campaigns, feints, gambits, and harvesting--available to any multiproduct or multimarket corporation that wants to compete skillfully. They cite real-world examples such as the U.S. pricing battle Philip Morris waged with R.J. Reynolds--not to gain market share in the domestic cigarette market but to divert R.J. Reynolds's resources and attention from the opportunities Philip Morris was pursuing in Eastern Europe. And, using data they collected from their studies of consumer-products companies Procter & Gamble and Unilever, the authors describe how to create CSI tables and bubble charts that present a graphical look at the competitive landscape and that may uncover previously hidden opportunities. The CSI mapping process isn't just for global corporations, the authors explain. Smaller organizations that compete with a portfolio of products in just one national or regional market may find it just as useful for planning their next business moves.

  16. GLOBALIZATION AND IMPORT RISKS

    Directory of Open Access Journals (Sweden)

    Popa Ioan

    2014-07-01

    Full Text Available Delocalization of production and diversification of the sources of offer in the global market place the issue of protection of consumer rights in major consumption centres, namely the European Union in a new light. A review of policies for the protection of consumer rights in the EU, USA and China, reveals major differences regarding the protection of consumer rights and the existence of gaps, and in particular the implementation of effective legislation in this regard. As such, the risks associated with imports have become a major concern in the European Union. The consumer has – one can say – a central role in the globalization process, which justifies the measures aimed at its protection. Although worldwide there are major differences in the degree of market regulation in matters of protection of consumer rights, the trend is the continuous adaptation of the offer to the requirements of global demand. However, one can still find significant gaps which translate into risks specific to the consumers in developed countries, namely in the EU. An important issue arises from this radical change of the localization of production centres in relation to the main consumption centres. While in the developed world, consumer rights protection has reached high levels both by creating an appropriate legislative framework and through consumer awareness and activism regarding their rights, in areas where much of the offer comes from the Western market (China, India, etc. modern mentality on the protection of consumer rights is just emerging. A major requirement is therefore the provision of a status of the consumer compatible with the benefits and risks of globalization, a status defined by safety and protection of imports. This paper confirms the thesis that, ultimately, the main factor counteracting the risks in matters of protection of consumer rights is the consumer, its awareness of its rights.

  17. The contradictory impact of globalization and migration on gender equality

    DEFF Research Database (Denmark)

    2009-01-01

    Globalization and migration have increased diversities and inequalities within and between nation-states and have created new problems regarding public policies intented to regulate political and socio-economic problems on national and global levels. Globalization and increased migration thus rep...... represent a thoeretical, normative and political challenge to understanding how gender and diversity at the national level are linked to processes of globalization. This article identifies some of the many issues involved in the Asia-Nordic 'local-global dialectic'....

  18. 硼锰配施对红菜薹营养品质及生理指标的影响%Effect of Combined Use of Boron and Manganese Fertilizers on the Nutritional Quality and Physiological Indices of Brassica campestris L. ssp. chinensis L. var. utilis

    Institute of Scientific and Technical Information of China (English)

    肖伟; 刘红利; 梁英; 黄长干

    2013-01-01

    [Objective] The purpose of this study is to determine the effects of com-bined use of boron and manganese fertilizers on the nutritional quality and physio-logical indices of Brassica campestris. [Method] In the nutrient solutions for growing B. campestris by hydroponics, boric acid and manganese sulfate were added at 0.5, 2.5, and 7.5 mg/L respectively. Another treatment without boron and manganese was prepared as the control. Quality and physiological indices of B. campestris in the 10 treatments were measured. [Result] Boron and manganese shared obvious in-teraction in improving the quality and physiological indices of B. campestris. To cul-tivate B. campestris with high quality and strong resistance, the optimum concentra-tions of boron and manganese in the nutrient solution should be 2.5 mg/L boric acid and 2.5-7.5 mg/L manganese sulfate. [Conclusion] The findings wil provide refer-ence for studying effects of trace elements on nutrient composition of vegetables.%[目的]研究硼锰配施对红菜薹营养品质及生理指标的影响。[方法]在其他营养元素满足的水培条件下,采用双因子3水平组合设计,每升营养液中分别配0.5、2.5和7.5 mg制硼酸、硫酸锰,得到9个不同的硼锰配施处理,测定各处理红菜薹相关品质及生理指标。[结果]硼、锰配施对红菜薹品质和生理指标的影响有明显的交互作用,在水培条件下,保证红菜薹优质、抗性强的硼锰浓度分别为:硼酸的浓度为2.5 mg/L,硫酸锰的浓度为2.5~7.5 mg/L。[结论]该研究为进一步研究微量元素配施对蔬菜营养成分的影响奠定了基础。

  19. cambio global

    Directory of Open Access Journals (Sweden)

    B. Alonso

    2006-01-01

    Full Text Available Un avance significativo dentro del área de la ecología sólo se podrá lograr con la adopción generalizada de un sistema basado en el uso compartido de los datos entre científicos. Esta práctica, apoyada por el desarrollo de metadatos precisos que acompañen a los propios datos, conseguirá aumentar la escala temporal y espacial de los objetos de estudio, ventajas evidentes en un área en la que cuestiones de carácter global como el estudio de los efectos del cambio climático van adquiriendo cada vez mayor importancia. En la actualidad existen numerosos grupos de científicos que trabajan voluntariamente en el desarrollo de herramientas que faciliten a los científicos la documentación y el almacenaje de sus datos. Asimismo, Internet está demostrando ser un potente instrumento para compartirlos. Aprovechar estos recursos es decisión nuestra.

  20. A phytosterol enriched refined extract of Brassica campestris L. pollen significantly improves benign prostatic hyperplasia (BPH) in a rat model as compared to the classical TCM pollen preparation Qianlie Kang Pule'an Tablets.

    Science.gov (United States)

    Wang, Ruwei; Kobayashi, Yuta; Lin, Yu; Rauwald, Hans Wilhelm; Fang, Ling; Qiao, Hongxiang; Kuchta, Kenny

    2015-01-15

    In Qinghai Province, the Brassica campestris L. pollen preparation Qianlie Kang Pule'an Tablet (QKPT) is traditionally used for BPH therapy. However, in QKPT the content of supposedly active phytosterols is relatively low at 2.59%, necessitating high doses for successful therapy. Therefore, a phytosterol enriched (4.54%) refined extract of B. campestris pollen (PE) was developed and compared with QKPT in a BPH rat model. Six groups of rats (n=8 each), namely sham-operated distilled water control, castrated distilled water control, castrated QKPT 2.0g/kg, castrated PE 0.1g/kg, castrated PE 0.2g/kg, and castrated PE 0.4g/kg, were intragastrically treated with the respective daily doses. Testosterone propionate (0.3mg/day) was administered to all castrated rats, while the sham-operated group received placebo injections. After 30 days, the animals were sacrificed and prostates as well as seminal vesicles excised and weighted in order to calculate prostate volume index (PVI) as well as prostate index (PI) and seminal vesicle index (SVI), defined as organ weight in g per 100g body weight. Compared with sham-operated controls, PI (p<0.01), PVI (p<0.01), and SVI (p<0.01) were all significantly increased in all castrated, testosterone treated rats. After treatment with PE at 0.4 and 0.2g/kg or QKPT at 2.0g/kg per day, both indices were significantly reduced (p<0.01) as compared to the castrated distilled water control. For PE at 0.1g/kg per day only PI was significantly reduced (p<0.05). At the highest PE concentration of 0.4g/kg per day both PI and SVI were also significantly reduced when compared to the QKPT group (p<0.05). Both PE and QKPT demonstrated curative effects against BPH in the applied animal model. In its highest dose at 0.4g/kg per day, PE was clearly superior to QKPT.

  1. hexA of Erwinia carotovora ssp. carotovora strain Ecc71 negatively regulates production of RpoS and rsmB RNA, a global regulator of extracellular proteins, plant virulence and the quorum-sensing signal, N-(3-oxohexanoyl)-L-homoserine lactone.

    Science.gov (United States)

    Mukherjee, A; Cui, Y; Ma, W; Liu, Y; Chatterjee, A K

    2000-04-01

    The soft-rotting bacterium, Erwinia carotovora ssp. carotovora (E. c. carotovora), produces an array of extracellular enzymes (= exoenzymes), including pectate lyase (Pel), polygalacturonase (Peh), cellulase (Cel) and protease (Prt), as well as HarpinEcc, the elicitor of hypersensitive reaction (HR). The production of these exoenzymes and HarpinEcc responds to plant products and the quorum-sensing signal [N-(3-oxohexanoyl)-L-homoserine lactone; OHL] and is subject to both transcriptional and post-transcriptional regulation. hexA of E. c. carotovora strain Ecc71 (hereafter hexA71), like that of another E. c. carotovora strain, negatively controls the production of exoenzymes, OHL and virulence in E. c. carotovora strain Ecc71. In addition to exoenzymes, HexA71 negatively regulates the expression of hrpNEcc, the structural gene for HarpinEcc. Exoenzyme overproduction is abolished by OHL deficiency in a HexA- and Ohll- double mutant, indicating that HexA and OHL are components of a common regulatory pathway controlling exoenzyme production. HexA71 negatively affects RpoS, as the levels of this alternative sigma factor are higher in the HexA- mutant than in the HexA+ strain. However, a HexA- and RpoS double mutant produces higher levels of exoenzymes and transcripts of pel-1, peh-1 and celVgenes than the HexA- and RpoS+ parent. Thus, the elevated levels of RpoS protein in the HexA- mutant do not account for exoenzyme overproduction. The following evidence associates for the first time the phenotypic changes in the HexA mutant to overproduction of rsmB RNA, a global regulator of exoenzymes, HarpinEcc, OHL and secondary metabolites. Analyses of rsmB transcripts and expression of an rsmB-lacZoperon fusion in E. c. carotovora strain Ecc71 revealed that HexA71 negatively regulates transcription of rsmB. Multiple copies of hexA71+ DNA suppress various phenotypes, including exoenzyme production in E. c. carotovora strain Ecc71, and concomitantly inhibit the production of rsm

  2. Global Warming on Triton

    Science.gov (United States)

    Elliot, J. L.; Hammel, H. B.; Wasserman, L. H.; Franz, O. G.; McDonald, S. W.; Person, M. J.; Olkin, C. B.; Dunham, E. J.; Spencer, J. R.; Stansberry, J. A.; Buie, M. W.; Pasachoff, J. M.; Babcock, B. A.; McConnochie, T. H.

    1998-01-01

    Triton, Neptune's largest moon, has been predicted to undergo significant seasonal changes that would reveal themselves as changes in its mean frost temperature. But whether this temperature should at the present time be increasing, decreasing or constant depends on a number of parameters (such as the thermal properties of the surface, and frost migration patterns) that are unknown. Here we report observations of a recent stellar occultation by Triton which, when combined with earlier results, show that Triton has undergone a period of global warming since 1989. Our most conservative estimates of the rate of temperature and surface-pressure increase during this period imply that the atmosphere is doubling in bulk every 10 years, significantly faster than predicted by any published frost model for Triton. Our result suggests that permanent polar caps on Triton play a c dominant role in regulating seasonal atmospheric changes. Similar processes should also be active on Pluto.

  3. 31 CFR 594.310 - Specially designated global terrorist; SDGT.

    Science.gov (United States)

    2010-07-01

    ... 31 Money and Finance: Treasury 3 2010-07-01 2010-07-01 false Specially designated global terrorist; SDGT. 594.310 Section 594.310 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY GLOBAL TERRORISM SANCTIONS REGULATIONS General Definitions §...

  4. Making Globalization Work: Towards Global Economic Justice

    OpenAIRE

    Khan, Haider

    2008-01-01

    Globalization as a corporate-led process has come under much justifiable criticism. This paper attempts to give the term analytic content distinct from its more ideological formulations.. It then focuses on a normative analysis of globalization from the capabilities perspective. A freedom-centered perspective such as the capabilities approach emphasizes policies and institutions that can enhance freedom globally and locally. A global governance structure based on transparent principles of bo...

  5. The financial crises of globalization

    Directory of Open Access Journals (Sweden)

    Edgar Vieira Posada

    2014-06-01

    Full Text Available In the twentieth century there was a debate between Keynesian and the market neoliberal economy school and the Keyneysian model prevail until the arrival of contemporary globalization,that adopted the neoliberal paradigm. Instead of a productive globalization a financial globalization was first developed which has led to recurring crises since 1929; the last one erupted in 2008 and it is still having a negative impact on the economic environment of the planet. The result has been to produce a very slow market self-regulation of the neoliberal model by introducing again monitoring and follow-up mechanisms by States and international organisms for predicting the occurrence of such serious crises for world economy

  6. Cloning and Sequence Analysis of a DFR Gene from Brassica campestris L.var. oleifera DC.%白菜型油菜DFR基因的克隆与序列分析

    Institute of Scientific and Technical Information of China (English)

    李运涛; 李加纳; 柴友荣; 杨成军; 雷波

    2005-01-01

    By using RACE (rapid amplification of cDNA ends) based homologous cloning strategy, we have successfully isolated the genomic and full-length cDNA sequences of a gene encoding typical DFR (dihydroflavonol-4-reductase) from black-seeded Brassica campestris L. var. oleifera DC.. The gene, designated BcDFR here, is 1 722bp in length and harbors 5 introns with typical splice sites of plant DFR genes. BcDFR cDNA is 1 311bp in length with a 1 158bp ORF as well as a 25bp 5′ UTR and a 128bp 3′ UTR. The encoded BcDFR protein is 385 aa with a calculated Mw of 42.85kD and a pI value of 5.55. The nucleotide and amino acid sequences of this gene share extensive homologies to plant DFR genes of wide origins especially high similarities to Cruciferous DFR genes. Sequence analyses such as phylogenetic analysis, conserved domain search and substrate specificity region detection all indicated that BcDFR gene is a quite potentially biofunctional gene. Its cloning enables us to further dissect the possible relatedness between DFR gene and Brassica seed coat color traits and to create transgenic novel yellow-seeded rapeseed germplasm through antisense- or RNAi-suppression of DFR gene expression in black-seeded elite cultivars.

  7. Production of the Quinone-Methide Triterpene Maytenin by In Vitro Adventitious Roots of Peritassa campestris (Cambess. A.C.Sm. (Celastraceae and Rapid Detection and Identification by APCI-IT-MS/MS

    Directory of Open Access Journals (Sweden)

    Tiago Antunes Paz

    2013-01-01

    Full Text Available Establishment of adventitious root cultures of Peritassa campestris (Celastraceae was achieved from seed cotyledons cultured in semisolid Woody Plant Medium (WPM supplemented with 2% sucrose, 0.01% PVP, and 4.0 mg L−1 IBA. Culture period on accumulation of biomass and quinone-methide triterpene maytenin in adventitious root were investigated. The accumulation of maytenin in these roots was compared with its accumulation in the roots of seedlings grown in a greenhouse (one year old. A rapid detection and identification of maytenin by direct injection into an atmospheric-pressure chemical ionization ion trap tandem mass spectrometer (APCI-IT-MS/MS were performed without prior chromatographic separation. In vitro, the greatest accumulation of biomass occurred within 60 days of culture. The highest level of maytenin—972.11 μg·g−1 dry weight—was detected at seven days of cultivation; this value was 5.55-fold higher than that found in the roots of seedlings grown in a greenhouse.

  8. NMR and MS evidences for a random assembled O-specific chain structure in the LPS of the bacterium Xanthomonas campestris pv. Vitians. A case of unsystematic biosynthetic polymerization.

    Science.gov (United States)

    Molinaro, Antonio; De Castro, Cristina; Lanzetta, Rosa; Parrilli, Michelangelo; Petersen, Bent O; Broberg, Anders; Duus, Jens Ø

    2002-09-01

    Xanthomonas campestris pv. vitians is a Gram-negative plant-associated bacterium that acts as causative agent of bacterial leaf spot and headrot in lettuce. The lipopolysaccharide of this bacterium is suspected to be an important molecule for adhesion to and infection of the plants. The lipopolysaccharide has been isolated from the phenol phase and the O-specific chain characterized by compositional analysis, high field NMR and MALDI-TOF MS. It consists of a nonrepetitive branched polysaccharide with a rhamnan backbone to which Fuc3NAc is linked. The NMR and MS approach led to the characterization of the fine structure of the polymer, which is randomly assembled. The rhamnan backbone is built up of beta-Rhap and alpha-Rhap, this last is present in one, two or three adjacent units and branched by an alpha-Fucp3NAc unit. This is a real case of a random constituted O-specific chain, therefore biosynthetic studies towards the comprehension of this irregular biosynthesis are needed.

  9. Globalization and Labour Markets Deregulation

    OpenAIRE

    Teodora Dimitrova; Anton Tchipev

    2004-01-01

    We present a model consistent with the stylized fact that rigid Europe has witnessed higher unemployment and a more compressed wage structure than flexible America . A distinguishing feature of the present paper is that it endogenises the labour market regulations that account for this divergent experience. We use our political economy model to investigate the policy responses to globalization, i.e. to an increase in international capital mobility. It turns out that labour market instituti...

  10. Globalization and economic cooperation

    Directory of Open Access Journals (Sweden)

    Javier Divar

    2006-12-01

    Full Text Available Economic globalization is nothing, really, that the universality of capitalism. Not globalized culture, and economic participation, and human rights, ... has only globalized market. We must react by substituting those materialistic values with cooperative economy.

  11. Globalization and inequality

    NARCIS (Netherlands)

    Mills, Melinda

    2009-01-01

    Globalization is increasingly linked to inequality, but with often divergent and polarized findings. Some researchers show that globalization accentuates inequality both within and between countries. Others maintain that these claims are patently incorrect, arguing that globalization has disintegrat

  12. Exploring Late Globalization

    DEFF Research Database (Denmark)

    Turcan, Romeo V.

    2016-01-01

    The purpose of this viewpoint paper is to motivate a program of research on late globalization, a program that could eventually lead to one or more significant theories of late globalization. The paper explores the phenomenon of late globalization as well as the idea of “late” by drawing on sparse...... literature on late globalization from sociocultural and economic perspectives. It illustrates in a vignette the character and features of late globalization observable in the withdrawal from foreign locations or deinternationalization of universities, as late globalizing entitis. The paper discusses...... the range of constructs around the core idea of late globalization, generating questions for future work in a late globalization research program....

  13. Global cities: Global parks: Globalizing of digital leisure networks.

    NARCIS (Netherlands)

    P.A. Arora (Payal)

    2013-01-01

    textabstractThis paper proposes to understand the globalizing of online Social Network Sites (SNS) through the spatial metaphor of global parks. It builds upon a commonly accepted ideation of the city as socially-constructed and that which has been harnessed to understand the spatiality of the Inte

  14. China and Global Governance

    Institute of Scientific and Technical Information of China (English)

    Wang Zaibang

    2007-01-01

    To enhance global governance has become more urgent with rapid development of globalization in the post-Cold War years. China has benefited from the process of globalization and hence should make greater contribution to the global governance in the future.

  15. Globalization challenges in a globalized world

    Directory of Open Access Journals (Sweden)

    Dr.Sc. Gjon Boriçi

    2016-01-01

    Full Text Available Globalization is an ongoing phenomenon trying to redefine the economic, social, cultural and political dynamics of contemporary societies. The communication among countries and not only them, has been increased expanding political ties, making possible greater economic integration and wider cultural relations combined with augmented global wealth across the world. But, the process of globalization is in wider terms considered a beneficial one, but also viewed by some countries as a menace to national sovereignty and national culture. This paper tries to explain the obstacles to the process of globalization and its attendant benefits. Although globalization has arisen as a result of a more stable world, the factors that had contributed to its rise also help the factions interested to bring destabilization. In an academic approach in this article, between the research and comparative methods, I have been trying to get the maxims between economy, politics and diplomacy in their efforts of affecting the global era.

  16. Minimum wages, globalization and poverty in Honduras

    OpenAIRE

    Gindling, T. H.; Terrell, Katherine

    2008-01-01

    To be competitive in the global economy, some argue that Latin American countries need to reduce or eliminate labour market regulations such as minimum wage legislation because they constrain job creation and hence increase poverty. On the other hand, minimum wage increases can have a direct positive impact on family income and may therefore help to reduce poverty. We take advantage of a complex minimum wage system in a poor country that has been exposed to the forces of globalization to test...

  17. Global health and the global economic crisis.

    Science.gov (United States)

    Benatar, Solomon R; Gill, Stephen; Bakker, Isabella

    2011-04-01

    Although the resources and knowledge for achieving improved global health exist, a new, critical paradigm on health as an aspect of human development, human security, and human rights is needed. Such a shift is required to sufficiently modify and credibly reduce the present dominance of perverse market forces on global health. New scientific discoveries can make wide-ranging contributions to improved health; however, improved global health depends on achieving greater social justice, economic redistribution, and enhanced democratization of production, caring social institutions for essential health care, education, and other public goods. As with the quest for an HIV vaccine, the challenge of improved global health requires an ambitious multidisciplinary research program.

  18. Theorising Global Business Spaces

    OpenAIRE

    Jones, A

    2009-01-01

    Over the last decade, geographers have paid a great deal of attention to transnational firms (TNCs) and global production networks (GPNs) in the global economy, to the emergence of a mobile transnational business class and also to the development of global or globalizing cities. All three literatures have made important contributions to understanding the spatiality of global economic activity, but each adopts a fairly discreet theoretical and empirical focus. This article aims to outline a nu...

  19. Globalization and human cooperation.

    Science.gov (United States)

    Buchan, Nancy R; Grimalda, Gianluca; Wilson, Rick; Brewer, Marilynn; Fatas, Enrique; Foddy, Margaret

    2009-03-17

    Globalization magnifies the problems that affect all people and that require large-scale human cooperation, for example, the overharvesting of natural resources and human-induced global warming. However, what does globalization imply for the cooperation needed to address such global social dilemmas? Two competing hypotheses are offered. One hypothesis is that globalization prompts reactionary movements that reinforce parochial distinctions among people. Large-scale cooperation then focuses on favoring one's own ethnic, racial, or language group. The alternative hypothesis suggests that globalization strengthens cosmopolitan attitudes by weakening the relevance of ethnicity, locality, or nationhood as sources of identification. In essence, globalization, the increasing interconnectedness of people worldwide, broadens the group boundaries within which individuals perceive they belong. We test these hypotheses by measuring globalization at both the country and individual levels and analyzing the relationship between globalization and individual cooperation with distal others in multilevel sequential cooperation experiments in which players can contribute to individual, local, and/or global accounts. Our samples were drawn from the general populations of the United States, Italy, Russia, Argentina, South Africa, and Iran. We find that as country and individual levels of globalization increase, so too does individual cooperation at the global level vis-à-vis the local level. In essence, "globalized" individuals draw broader group boundaries than others, eschewing parochial motivations in favor of cosmopolitan ones. Globalization may thus be fundamental in shaping contemporary large-scale cooperation and may be a positive force toward the provision of global public goods.

  20. 野油菜黄单胞菌中gumD基因的过表达对产黄原胶的影响%Effect of by overexpressing gumD in Xanthomonas campestris on the xanthan gum

    Institute of Scientific and Technical Information of China (English)

    王桂兰; 张晓元; 陈晓燕; 朱希强; 凌沛学

    2012-01-01

    Purpose To improve the yield and quality of xanthan gum by overexpressing gumD in Xanthomonas campestris 58 ( Xc58 ). Methods By PCR amplification, plasmid construction, triparental conjugation and other methods,pBBR-gumD was transformed into the original strain Xc58. Results Compared with Xc58,the recombinant strain Xc58-D has increased by 11. 19% in the yield of xanthan gum, by 6.31% increased in viscosity,by 20. 21 % increased in molecular weight,and by 77. 07% increased in acetyl content, but 6. 34% decreased in pyruvate content. Conclusion The recombinant strain has a higher yield and improves the quality of xanthan gum.%目的 在野油菜黄单胞茵58(Xc58)中过量表达产胶基因gumD,提高黄原胶发酵产量和质量.方法 通过PCR扩增、重组质粒构建、三亲本接合等方法,将重组质粒pBBR-gumD转入原始茵Xc58.结果 工程茵与原始茵相比,黄原胶产量提高11.19%,黏度提高6.31%,重均分子质量提高20.21%,乙酰基含量提高77.07%,丙酮酸含量下降6.34%.结论 改造后的菌株的黄原胶发酵产量和质量都较原始茵株有所提高.

  1. Cloning and Expression Analysis of Ty1-copia-like Retrotransposons in Brassica campestris ssp.chinensis%不结球白菜Ty1-copia类逆转座子序列的克隆及表达

    Institute of Scientific and Technical Information of China (English)

    肖栋; 侯喜林; 马景蕃; 王枫; 齐莉; 李音孜

    2009-01-01

    参照Ty1-copia类逆转座子逆转录酶的保守区设计简并引物,分别从10个不结球白菜(Brassica campestris ssp.chinensis)品种的全基因组中均扩增出260 bp左右的目标条带. 将目的条带回收、克隆和测序后进行分析,DNAstar分析发现,这些序列存在高度的异质性,28个核苷酸序列变化范围为224~278 bp,同源性范围为16.7%~83.0%.28条序列通过核苷酸聚类分为8个家族.推导氨基酸序列有移框突变、终止子突变或二者兼有;与已登录的不同物种同一类型逆转录酶氨基酸系统进化树分析表明,不结球白菜Ty1-copia类逆转座子与芥菜型油菜、拟南芥、芜菁、甜菜可能有共同的起源.半定量和实时定量PCR检测表明,水杨酸(salicylic acid)和Peronospora parasitica均能激活不结球白菜Ty1-copia类逆转座子,逆转座子在不结球白菜叶片中的表达特征说明它可能参与寄主对病原菌的抗性.

  2. The Challenge of Global Poliomyelitis Eradication.

    Science.gov (United States)

    Garon, Julie R; Cochi, Stephen L; Orenstein, Walter A

    2015-12-01

    In the United States during the 1950's, polio was on the forefront of every provider and caregiver's mind. Today, most providers in the United States have never seen a case. The Global Polio Eradication Initiative (GPEI), which began in 1988 has reduced the number of cases by over 99%. The world is closer to achieving global eradication of polio than ever before but as long as poliovirus circulates anywhere in the world, every country is vulnerable. The global community can support the polio eradication effort through continued vaccination, surveillance, enforcing travel regulations and contributing financial support, partnerships and advocacy.

  3. Planning for the Next Global Pandemic

    Directory of Open Access Journals (Sweden)

    Allen G.P. Ross

    2015-09-01

    Full Text Available In order to mitigate human and financial losses as a result of future global pandemics, we must plan now. As the Ebola virus pandemic declines, we must reflect on how we have mismanaged this recent international crisis and how we can better prepare for the next global pandemic. Of great concern is the increasing frequency of pandemics occurring over the last few decades. Clearly, the window of opportunity to act is closing. This editorial discusses many issues including priority emerging and re-emerging infectious diseases; the challenges of meeting international health regulations; the strengthening of global health systems; global pandemic funding; and the One Health approach to future pandemic planning. We recommend that the global health community unites to urgently address these issues in order to avoid the next humanitarian crisis.

  4. Global health research needs global networking

    NARCIS (Netherlands)

    Ignaciuk, A.; Leemans, R.

    2012-01-01

    To meet the challenges arising from global environmental change on human health, co-developing common approaches and new alliances of science and society are necessary. The first steps towards defining cross-cutting, health-environment issues were developed by the Global Environmental Change and Hum

  5. Global Mindset in Context:

    DEFF Research Database (Denmark)

    Nielsen, Rikke Kristine

    2017-01-01

    This paper addresses the call for identification of organizational contingencies related to global mindset, exploration of different forms of global mindset and their relationship with global strategies (Osland, Bird, Mendenhall & Osland, 2006). To this end, this paper explores global mindset...... development in the context of a 3-year single case study of middle manager microfoundations of global mindset in a Danish multinational corporation working with deliberate global mindset capability development as a vehicle for strategy execution and facilitation of global performance. A force field analysis...... of individual middle manager behavioural microfoundations of global mindset and associated organizational practices is condensed into four core aspects of individual-organizational practice enabling the enactment of global mindset in context; strategic dialogue, ‘just-enough’ interaction and exposure, imagined...

  6. Global Business Models

    DEFF Research Database (Denmark)

    Rask, Morten

    insight from the literature about business models, international product policy, international entry modes and globalization into a conceptual model of relevant design elements of global business models, enabling global business model innovation to deal with differences in a downstream perspective...... regarding the customer interface and in an upstream perspective regarding the supply infrastructure. The paper offers a coherent conceptual dynamic meta-model of global business model innovation. Students, scholars and managers within the field of international business can use this conceptualization...... to understand, to study, and to create global business model innovation. Managerial and research implications draw on the developed ideal type of global business model innovation....

  7. Global from the Start

    DEFF Research Database (Denmark)

    Tanev, Stoyan

    2012-01-01

    This article provides insights from recent research on firms that are "born global". A born-global firm is a venture launched to exploit a global niche from the first day of its operations. The insights in this article are relevant to technology entrepreneurs and top management teams of new...... technology firms. After discussing various definitions for the term "born global" and identifying the main characteristics of born-global firms, this article lists a few salient characteristics of firms that are born global in the technology sector. The article concludes by identifying opportunities...

  8. Globalization and democracy

    Directory of Open Access Journals (Sweden)

    DEEPAK NAYYAR

    2015-09-01

    Full Text Available ABSTRACTThe gathering momentum of globalization in the world economy has coincided with the spread of political democracy across countries. Economies have become global. But politics remains national. This essay explores the relationship between globalization and democracy, which is neither linear nor characterized by structural rigidities. It seeks to analyze how globalization might constrain degrees of freedom for nation states and space for democratic politics, and how political democracy within countries might exercise some checks and balances on markets and globalization. The essential argument is that the relationship between globalization and democracy is dialectical and does not conform to ideological caricatures.

  9. COMPETING CONCEPTIONS OF GLOBALIZATION

    Directory of Open Access Journals (Sweden)

    Leslie Sklair

    2015-08-01

    Full Text Available Globalization is a relatively new idea in the social sciences, although people who work in and write about the mass media, transnational corporations and international business have been using it for some time. The purpose of this paper is to critically review the ways in which sociologists and other social scientists use ideas of globalization and to evaluate the fruitfulness of these competing conceptions. The central feature of the idea of globalization is that many contemporary problems cannot be adequately studied at the level of nation-states, that is, in terms of each country and its inter-national relations. Instead, they need to be conceptualized in terms of global processes. Some have even gone so far as to predict that global forces, by which they usually mean transnational corporations and other global economic institutions, global culture or globalizing belief systems/ideologies of various types, or a combination of all of these, are becoming so powerful that the continuing existence of the nation-state is in serious doubt. This is not a necessary consequence of most theories of globalization. The argument of this paper is that much of the globalization literature is confused because not all those who use the term distinguish it clearly enough from internation-alization, and some writers appear to use the two terms interchangeably. I argue that a clear distinction must be drawn between the inter-national and the global. The hyphen in inter-national is to distinguish (inadequate conceptions of the global' founded on the existing even if changing system of nation-states, from (genuine conceptions of the global based on the emergence of global processes and a global system of social relations not founded on national characteristics or nation-states. This global system theory is the framework for my own research. Globalization studies can be categorized on the basis of four research clusters:1. The world-systems approach; 2. The global

  10. Global solidarity, migration and global health inequity.

    Science.gov (United States)

    Eckenwiler, Lisa; Straehle, Christine; Chung, Ryoa

    2012-09-01

    The grounds for global solidarity have been theorized and conceptualized in recent years, and many have argued that we need a global concept of solidarity. But the question remains: what can motivate efforts of the international community and nation-states? Our focus is the grounding of solidarity with respect to global inequities in health. We explore what considerations could motivate acts of global solidarity in the specific context of health migration, and sketch briefly what form this kind of solidarity could take. First, we argue that the only plausible conceptualization of persons highlights their interdependence. We draw upon a conception of persons as 'ecological subjects' and from there illustrate what such a conception implies with the example of nurses migrating from low and middle-income countries to more affluent ones. Next, we address potential critics who might counter any such understanding of current international politics with a reference to real-politik and the insights of realist international political theory. We argue that national governments--while not always or even often motivated by moral reasons alone--may nevertheless be motivated to acts of global solidarity by prudential arguments. Solidarity then need not be, as many argue, a function of charitable inclination, or emergent from an acknowledgment of injustice suffered, but may in fact serve national and transnational interests. We conclude on a positive note: global solidarity may be conceptualized to helpfully address global health inequity, to the extent that personal and transnational interdependence are enough to motivate national governments into action.

  11. Global Health System

    Science.gov (United States)

    ... Issue Past Issues From the NIH Director: A Global Health System Past Issues / Spring 2008 Table of ... officials the issues of world health and NIH's global outreach. He spoke with MedlinePlus ' Christopher Klose on ...

  12. Global Citizenship Education

    DEFF Research Database (Denmark)

    Roesgaard, Marie Højlund

    2016-01-01

    Global citizenship as an idea has become an increasingly important issue on the educational agenda since the late 1970’s. The importance allotted to this issue is clear in the attention given to it by for example UNESCO where global citizenship education (GCED) is an area of strategic focus....... Increasingly schools all over the world are attempting to or expected to educate the global citizen, but how exactly do you educate the global citizen? What does this global citizenship consist of? While surely the type of training and education needed to train a global citizen will vary greatly depending......, that it is possible to develop a feeling of global citizenship in a society. However, it is very important to keep in mind that global citizenship education as treated in the literature so far has been quite Eurocentric (this includes North America). A survey of research on GCED found that two thirds of the research...

  13. Global Governance of Migration

    OpenAIRE

    2011-01-01

    The aim of this thesis is to analyze the recently formed global governance of migration, which has got an unprecedented trans-boundary nature due to the impacts og globalization in the post Cold War era. 

  14. The small molecule '1-(4-biphenylylcarbonyl)-4-(5-bromo-2-methoxybenzyl) piperazine oxalate' and its derivatives regulate global protein synthesis by inactivating eukaryotic translation initiation factor 2-alpha.

    Science.gov (United States)

    Hong, Mi-Na; Nam, Ky-Youb; Kim, Kyung Kon; Kim, So-Young; Kim, InKi

    2016-05-01

    By environmental stresses, cells can initiate a signaling pathway in which eukaryotic translation initiation factor 2-alpha (eIF2-α) is involved to regulate the response. Phosphorylation of eIF2-α results in the reduction of overall protein neogenesis, which allows cells to conserve resources and to reprogram energy usage for effective stress control. To investigate the role of eIF2-α in cell stress responses, we conducted a viability-based compound screen under endoplasmic reticulum (ER) stress condition, and identified 1-(4-biphenylylcarbonyl)-4-(5-bromo-2-methoxybenzyl) piperazine oxalate (AMC-01) and its derivatives as eIF2-α-inactivating chemical. Molecular characterization of this signaling pathway revealed that AMC-01 induced inactivation of eIF2-α by phosphorylating serine residue 51 in a dose- and time-dependent manner, while the negative control compounds did not affect eIF2-α phosphorylation. In contrast with ER stress induction by thapsigargin, phosphorylation of eIF2-α persisted for the duration of incubation with AMC-01. By pathway analysis, AMC-01 clearly induced the activation of protein kinase RNA-activated (PKR) kinase and nuclear factor-κB (NF-κB), whereas it did not modulate the activity of PERK or heme-regulated inhibitor (HRI). Finally, we could detect a lower protein translation rate in cells incubated with AMC-01, establishing AMC-01 as a potent chemical probe that can regulate eIF2-α activity. We suggest from these data that AMC-01 and its derivative compounds can be used as chemical probes in future studies of the role of eIF2-α in protein synthesis-related cell physiology.

  15. The Global Value Chain

    DEFF Research Database (Denmark)

    Sørensen, Olav Jull

    The conference paper aims to develop the global value chain concept by including corporate internal value adding activities and competition to the basic framework in order to turn the global value chain into a strategic management tool......The conference paper aims to develop the global value chain concept by including corporate internal value adding activities and competition to the basic framework in order to turn the global value chain into a strategic management tool...

  16. Mapping Global Citizenship

    Science.gov (United States)

    Stein, Sharon

    2015-01-01

    The demand to cultivate global citizenship is frequently invoked as central to colleges' and universities' internationalization efforts. However, the term "global citizenship" remains undertheorized in the context of U.S. higher education. This article maps and engages three common global citizenship positions--entrepreneurial, liberal…

  17. Security Components of Globalization

    Directory of Open Access Journals (Sweden)

    Florin Iftode

    2015-05-01

    Full Text Available The objective of this paper is our intention to present what are the main connections between globalization and international security. In terms of global security we can perceive the globalization as a process by which global state is represented by the UN, with a single world system, represented by major security organizations and with global effects. We will present from the beginning the main theoretical aspects that define the phenomenon of globalization, and then our contribution in assessing the implications of this phenomenon on the regional and global security. The results of our research are materialized in the last part of the paper. They emphasize the personal assessments on how the phenomenon of globalization has direct effect on global security. When talking about government, we think of norms, rules and decisionmaking procedures in the management of international life. The value that we add to the new scientific interpretation of the definition of globalization is represented, primarily, by the valuable bibliographic used resources and the original approach on the concept that refers to the links between globalization and security. This article may be, at any time, a starting point in an interesting research direction in the field of global security.

  18. Globalization and American Education

    Science.gov (United States)

    Merriman, William; Nicoletti, Augustine

    2008-01-01

    Globalization is a potent force in today's world. The welfare of the United States is tied to the welfare of other countries by economics, the environment, politics, culture, information, and technology. This paper identifies the implications of globalization for education, presents applications of important aspects of globalization that teachers…

  19. Global Cancer Humanitarian Award

    Science.gov (United States)

    Pat Garcia-Gonzalez of the Max Foundation accepted the first annual NCI Global Cancer Medicine Humanitarian Award for her work in chronic myeloid leukemia at the NCI, Center for Global Health Symposium for Global Cancer Research, held in Boston on March 25, 2015.

  20. Developing Successful Global Leaders

    Science.gov (United States)

    Training, 2011

    2011-01-01

    Everyone seems to agree the world desperately needs strong leaders who can manage a global workforce and all the inherent challenges that go with it. That's a big part of the raison d'etre for global leadership development programs. But are today's organizations fully utilizing these programs to develop global leaders, and, if so, are they…

  1. Global Governance, Educational Change

    Science.gov (United States)

    Mundy, Karen

    2007-01-01

    In the last half decade, a rising literature has focused on the idea that processes of economic, political and social globalization require analysis in terms of governance at the global level. It is argued in this article that emerging forms of global governance have produced significant challenges to conventional conceptions of international…

  2. Global water governance

    NARCIS (Netherlands)

    Gupta, J.; Falkner, R.

    2013-01-01

    Although (fresh) water challenges are primarily local in nature, globalization has led to feedback effects that make many water challenges global in nature. This chapter examines global water governance. It discusses four phases of water governance, argues that water governance is dispersed and inco

  3. Global Peace through the Global University System

    Directory of Open Access Journals (Sweden)

    Cengiz Hakan AYDIN

    2006-01-01

    Full Text Available Utopia is defined in Encarta Dictionary as “an ideal and perfect place or state, where everyone lives in harmony and everything is for the best.” Developments all around the world especially in the last decade have supported the idea that global peace is nothing but just a utopian dream. However, for centuries a group of believers have always been in search of global peace via different means. This book, titled as “Global Peace through the Global University System”, can be considered as one of the artifacts of this search.Actually this book is a collection of papers presented in working conference on the Global University System (GUS hosted by the University of Tampere, Finland in 1999. The main goal of the conference was bringing international experts to share their philosophy, past and present experiences about the GUS. The conference was held by the University of Tampere because UNESCO has an agreement with the University to establish the UNESCOChair in Global e-Learning.

  4. How Global is Global Civil Society?

    Directory of Open Access Journals (Sweden)

    Neera Chandhoke

    2015-08-01

    Full Text Available In recent times the concept of global civil society has made its appearance on national and international intellectual, as well as political agendas, in a major way. It is of some interest that two other concepts, both of which call for transcendence of national boundaries in precisely the same way as global civil society does, have also made their appearance on the scene of intellectual debates at roughly the same time: the concept of cosmopolitanism and that of transnational justice. All three concepts have dramatically expanded the notion of commitment to one’s fellow beings beyond the nation state. And all three concepts have extended critiques of policies that violate the dignity of human beings from national governments to the practices of inter-national institutions such as the World Bank, the International Monetary Fund, and the World Trade Forum. In sum the inter-related concepts of global civil society, cosmopolitanism, and transnational justice have greatly enlarged the traditional domain of political theory. And yet for any political theorist who is acutely conscious of the phenomenon of power, these concepts are not unproblematic. For the practices of global civil society may just reinforce the intellectual and the moral power of the West over the postcolonial world. This is particularly true of say global human rights organizations. This paper will attempt to raise some questions of the concept and the practices of global civil society from the perspective of the countries of the South.

  5. Globalization in the post - colonial world

    Directory of Open Access Journals (Sweden)

    Korobeynikova Larisa A.

    2016-01-01

    Full Text Available The paper presents a new interpretation of globalization within the boundaries of the author’s concept of soft globalization, which exploits a normatively attractive alternative to the concept of the Empire. It is argued here that the conditions of development of contemporary post - colonial world communities do not require any unification in the form of the Empire, but instead the creation of a non repressive mechanism of social regulation - the implementation of a form of soft globalization, a globalization with a mental form are expedient here. Historically, globalization occurred in a strict material(i.e. economical and military form that prompted the conditions for the evolution of civilization as the Empire: a case in which the development of the world occurs under the power of a single dominating state. Imperialistic politics leads to colonial politics formation. The history of the phenomena of civilization shows many instances of Empire globalization. Globalization in the Empire form was already observed at the time of the Roman Empire. At this time processes of development inside the Empire were manifestations of globalization in its highest cultural shape. But ancient Rome was also a social and political experiment that acquired the attributes of a purely material globalization in the end, and historically brought about the irreversible crash of the Roman Empire itself. Contemporary fluctuations referring to the process of globalization can be registered in the US’s attempts of material domination inside this or that existing case of civilization, which causes colonialism appearance. The main idea stressed in the paper is that only a mental globalization could succeed in the end.

  6. 基于全局低分辨率CT扫描的合成层析成像技术%Global Low-Resolution CT Scan Regulated Tomo-synthesis

    Institute of Scientific and Technical Information of China (English)

    曾凯; 赵世英; Laurie Lee Fajardo; 王革

    2005-01-01

    Tomosynthesis reconstructs a 3D object from a scan (c)onsisting of a limited number of projections. Hence, tomosynthesis requires much less radiation dosage as compared to computed tomography (CT). A major problem with tomosynthesis is image artifacts associated with incompleteness of data. In this paper, we propose a tomosynthesis approach to achieve higher image quality in a region of interest (ROI) than competing techniques. First, a low-resolution global CT scan is acquired. Then, a high-resolution local scan is performed with respect to the ROI. Finally, images of the ROI are reconstructed from these two datasets. Our numerical simulation results show that images of the ROI obtained by our approach are significantly better than the counterparts without using the global scan information.%合成层析成像可由有限几个投影数据重建三维物体,与传统CT相比,该方法所需的射线剂量少得多.由于投影数据不完备,导致的重建图像伪影是合成层析成像的一个主要问题.本文提出一种对感兴趣区域进行合成层析成像方法,和其他方法相比可以得到更好的重建图像质量.该方法首先对目标进行低分辨率全局扫描,然后对感兴趣区域进行高分辨率局部扫描,最后,利用两次扫描的投影数据集合重建感兴趣区域的图像.数值仿真结果表明,用本方法重建感兴趣区域图像,要明显好于没有使用全局扫描信息的方法.

  7. Globalization and Economic Freedom

    DEFF Research Database (Denmark)

    Bjørnskov, Christian

    2006-01-01

    This paper employs a panel data set to estimate the effect of globalization on four measures of economic freedom. Contrary to previous studies, the paper distinguishes between three separate types of globalization: economic, social and political. It also separates effects for poor and rich...... countries, and autocracies and democracies. The results show that economic globalization is negatively associated with government size and positively with regulatory freedom in rich countries; social globalization is positively associated with legal quality in autocracies and with the access to sound money...... in democracies. Political globalization is not associated with economic freedom...

  8. Global Sourcing of Services

    DEFF Research Database (Denmark)

    Ørberg Jensen, Peter D.; Petersen, Bent

    2013-01-01

    The global sourcing of services offers high returns but is also associated with high risks. The extent to which firms engage in ‘transformational’ global sourcing (i.e., global sourcing implying considerable changes in the home organization) chiefly depends on management's comfort zone which......, in turn, is determined by managers' risk perceptions, risk tolerance, and ability to employ risk-reducing measures. Many firms move into transformational global sourcing more or less deliberately. However, as the human asset specificity of the global sourcing operation increases, managers find themselves...

  9. Institutionalizing Global Governance

    DEFF Research Database (Denmark)

    Rasche, Andreas; Gilbert, Dirk Ulrich

    2012-01-01

    The United Nations Global Compact – which is a Global Public Policy Network advocating 10 universal principles in the areas of human rights, labor standards, environmental protection, and anticorruption – has turned into the world's largest corporate responsibility initiative. Although the Global...... Compact is often characterized as a promising way to address global governance gaps, it remains largely unclear why this is the case. To address this problem, we discuss to what extent the initiative represents an institutional solution to exercise global governance. We suggest that new governance modes...

  10. Global Collaborative STEM Education

    Science.gov (United States)

    Meabh Kelly, Susan; Smith, Walter

    2016-04-01

    Global Collaborative STEM Education, as the name suggests, simultaneously supports two sets of knowledge and skills. The first set is STEM -- science, technology, engineering and math. The other set of content knowledge and skills is that of global collaboration. Successful global partnerships require awareness of one's own culture, the biases embedded within that culture, as well as developing awareness of the collaborators' culture. Workforce skills fostered include open-mindedness, perseverance when faced with obstacles, and resourceful use of technological "bridges" to facilitate and sustain communication. In respect for the 2016 GIFT Workshop focus, Global Collaborative STEM Education projects dedicated to astronomy research will be presented. The projects represent different benchmarks within the Global Collaborative STEM Education continuum, culminating in an astronomy research experience that fully reflects how the global STEM workforce collaborates. To facilitate wider engagement in Global Collaborative STEM Education, project summaries, classroom resources and contact information for established international collaborative astronomy research projects will be disseminated.

  11. Subpolítica Reflexiva no Contexto da Mundialização Informativa aplicada à Regulação Supranacional da Internet / Reflexive Sub-Politics in the context of Globalization of Information and the Internet Supranational Regulation

    Directory of Open Access Journals (Sweden)

    Bruna Pinotti Garcia

    2016-05-01

    em espaços virtuais no campo da regulação supranacional das novas tecnologias da informação, apresentando um panorama teórico-fático desses processos de interação subjetiva. Originalidade/Relevância – Os termos globalização e mundialização possuem múltiplos significados, o que não diminui a importância de compreendê-los cientificamente. Por seu turno, evidencia-se que o fenômeno da mundialização impõe o reconhecimento de que não cabe falar na política – e na atividade de regulação – como algo restrito aos Estados. A relevância do tema a ser pesquisado não é acompanhada de uma produção científica suficiente na área, eis que raríssimas são as abordagens sobre a governança digital na regulação da rede em âmbito supranacional. ABSTRACT Purpose – The World Wide Web is emerging not only as a mean of communication but serves as instrumental to the exercise of rights, including participation in sub-politics, so that becomes the interest of the individual put up as participatory actor in the process of discussion of its regulation. In this way, this paper addresses the following research question: Can reflective sub-politics be identified in the comparative scenario of multiple players acting in the regulation of Internet features? Methodology/approach/design – From the outset, the paper earmarks as relevant the understanding of the position of multiple players in the scenario of Internet regulation, which is possible only by supranational law comparative study contextualized with regard to sub-politics. The empirical basis of this paper lies in conferences of the United Nations, the Organization of American States, the European Union and the European Council. Its theoretical basis is focused on Ulrich Beck and Anthony Giddens and the concept of reflexive modernity associated with the policy, forming what is called reflexive sub-politics. Findings – The paper has proved the hypothesis that, regarding regulation of Internet

  12. Global Credit Crunch and Accounting

    Directory of Open Access Journals (Sweden)

    Haluk BENGÜ

    2015-12-01

    Full Text Available The concept of economic crisis is accepted to have entered management literature following the 1929 economic crisis. Can accounting be blamed for economic or financial crises? Is it fair to say that a defect or negligence in accounting and auditing played a role in the occurrence and rapid dissemination of the current global credit crunch? In other words, is it possible to find a link between the reasons for or results of the global financial crisis and the basic principles of accounting, the generally accepted accounting principles, the prevalent accounting approaches, methods and practices, the regulations on accounting, accounting audit and any relevant professional or legal regulation and accounting culture and values? The objective of this communiqué is to open the above-mentioned questions up for discussion. The answers to these questions are quite important, in that they will provide clues that can be used to shape the future of accounting and auditing. This study is expected to be inspirational for further empirical studies to be carried out in this domain.

  13. Globalization, international law, and emerging infectious diseases.

    Science.gov (United States)

    Fidler, D. P.

    1996-01-01

    The global nature of the threat posed by new and reemerging infectious diseases will require international cooperation in identifying, controlling, and preventing these diseases. Because of this need for international cooperation, international law will certainly play a role in the global strategy for the control of emerging diseases. Recognizing this fact, the World Health Organization has already proposed revising the International Health Regulations. This article examines some basic problems that the global campaign against emerging infectious diseases might face in applying international law to facilitate international cooperation. The international legal component of the global control strategy for these diseases needs careful attention because of problems inherent in international law, especially as it applies to emerging infections issues. PMID:8903206

  14. Global warming without global mean precipitation increase?

    Science.gov (United States)

    Salzmann, Marc

    2016-06-01

    Global climate models simulate a robust increase of global mean precipitation of about 1.5 to 2% per kelvin surface warming in response to greenhouse gas (GHG) forcing. Here, it is shown that the sensitivity to aerosol cooling is robust as well, albeit roughly twice as large. This larger sensitivity is consistent with energy budget arguments. At the same time, it is still considerably lower than the 6.5 to 7% K(-1) decrease of the water vapor concentration with cooling from anthropogenic aerosol because the water vapor radiative feedback lowers the hydrological sensitivity to anthropogenic forcings. When GHG and aerosol forcings are combined, the climate models with a realistic 20th century warming indicate that the global mean precipitation increase due to GHG warming has, until recently, been completely masked by aerosol drying. This explains the apparent lack of sensitivity of the global mean precipitation to the net global warming recently found in observations. As the importance of GHG warming increases in the future, a clear signal will emerge.

  15. The regulation of climate engineering

    NARCIS (Netherlands)

    Reynolds, J.L.

    2011-01-01

    Intentional interventions in global physical, chemical, and biological systems on a massive scale are receiving increasing attention in hopes of reducing the threat of anthropogenic climate change. Known as climate engineering, or geoengineering, research is moving forward, but regulation remains in

  16. 全球复合性状转基因作物监管制度的比较分析%The comparison and analysis of global stacked transgenic plant ruling regulations

    Institute of Scientific and Technical Information of China (English)

    朱鹏宇; 黄昆仑; 商颖; 许文涛

    2014-01-01

    首例转基因大豆于1988年诞生以来,越来越多的转基因性状得到了开发,包括:抗虫型,抗除草剂型等。随着农业育种的发展,现有的单一性状转基因作物已经不能满足农业的需求,聚合多种优良性状的复合性状转基因作物成为了转基因作物发展的趋势。复合性状转基因作物的不断研发,使不同的国家和地区制定了不同的复合性状转基因作物的监管和安全评价制度。本文归纳对比了现阶段不同国家和地区针对复合性状转基因作物的监管措施,通过对国际先进的监管制度进行总结,从而对我国的复合性状转基因作物的监管提供有效的依据。%Since the first transgenic soybean had been developed in 1988, more and more characters were achieved, including the insect- and herbicide-resistance. However, as the development of the breeding technology, the transgenic crops of single-character were not able to meet the demands of modern agriculture. The stacked transgenic plants that combine different characters have gradually raised the public’s attention. As the rapid development of the stacked transgenic plants, many countries and groups have declared different ruling and safety assessment regulations to govern the new-developed plants. In this paper, different ruling regulations and safety assessment were inducted; the efficient evidence of the stacked transgenic plants was provided for the supervision of the stacked transgenic plants.

  17. 2008 Küresel Krizinin Kökeninde Yatan Hatalar ve Dodd-Frank Kanunu Düzenlemeler(The Origin Mistakes of the 2008 Global Crisis and Dodd-Frank Act Regulations

    Directory of Open Access Journals (Sweden)

    Hülya KIRCI

    2016-08-01

    Full Text Available There are various scientific publishing which explains the reasons that caused 2008 crisis to emerge, yet, it is observed that a detailed study has not been done to put forth breeding mistakes of the crisis. Whilst,any reason that effects the crisis to break out is a result of a previously done mistake(s. This study is prepared with the aims; considering to be important to prevent probable crisis to clarify the bonds between the mistakes and reasons , previously done mistakes before the crisis and reasons for crisis developed by those mistakes, contribute to satisfying the need in the literature, and to examine the precautions taken by the USA to put away the reasons for the crisis. It is obsreved that the reasons breeding the crisis are arised from a series of chain mistakes starting with liberal policies and ends in focusing on the strong regulations for the management of financial crisis policies instead of liberal policies in the post crisis period

  18. Globalization of the sports economy

    OpenAIRE

    Wladimir Andreff

    2008-01-01

    Introduction – 1. Major features of a globalized sports economy – 2. International economic flows in a global sports economy – 3. Globalization as geographical spread of the sports economy – 4. Globalization of professional sports – Conclusion – References

  19. Globalization, culture and psychology.

    Science.gov (United States)

    Melluish, Steve

    2014-10-01

    This article outlines the cultural and psychological effects of globalization. It looks at the impact of globalization on identity; ideas of privacy and intimacy; the way we understand and perceive psychological distress; and the development of the profession of psychology around the world. The article takes a critical perspective on globalization, seeing it as aligned with the spread of neoliberal capitalism, a tendency towards cultural homogenization, the imposition of dominant 'global north' ideas and the resultant growing inequalities in health and well-being. However, it also argues that the increased interconnectedness created by globalization allows for greater acknowledgement of our common humanity and for collective efforts to be developed to tackle what are increasingly global problems. This requires the development of more nuanced understandings of cultural differences and of indigenous psychologies.

  20. Global Sourcing Flexibility

    DEFF Research Database (Denmark)

    Ørberg Jensen, Peter D.; Petersen, Bent

    2013-01-01

    sourcing flexibility. Here we draw on prior research in the fields of organizational flexibility, international business and global sourcing as well as case examples and secondary studies. In the second part of the paper, we discuss the implications of global sourcing flexibility for firm strategy......Recent studies show that flexibility is a key concern for firms that engage in the global sourcing of services. In this conceptual paper, we seek to explore two central aspects of global sourcing flexibility: In the first part of the paper, we provide a definition of the construct of global...... and operations against the backdrop of the theory-based definition of the construct. We discuss in particular the importance of global sourcing flexibility for operational performance stability, and the trade-off between specialization benefits, emerging from location and service provider specialization, versus...