Identification of a functional interaction between Kv4.3 channels and c-Src tyrosine kinase.
Gomes, Pedro; Saito, Tomoaki; Del Corsso, Cris; Alioua, Abderrahmane; Eghbali, Mansoureh; Toro, Ligia; Stefani, Enrico
2008-10-01
Voltage-gated K(+) (Kv) channels are key determinants of cardiac and neuronal excitability. A substantial body of evidence has accumulated in support of a role for Src family tyrosine kinases in the regulation of Kv channels. In this study, we examined the possibility that c-Src tyrosine kinase participates in the modulation of the transient voltage-dependent K(+) channel Kv4.3. Supporting a mechanistic link between Kv4.3 and c-Src, confocal microscopy analysis of HEK293 cells stably transfected with Kv4.3 showed high degree of co-localization of the two proteins at the plasma membrane. Our results further demonstrate an association between Kv4.3 and c-Src by co-immunoprecipitation and GST pull-down assays, this interaction being mediated by the SH2 and SH3 domains of c-Src. Furthermore, we show that Kv4.3 is tyrosine phosphorylated under basal conditions. The functional relevance of the observed interaction between Kv4.3 and c-Src was established in patch-clamp experiments, where application of the Src inhibitor PP2 caused a decrease in Kv4.3 peak current amplitude, but not the inactive structural analogue PP3. Conversely, intracellular application of recombinant c-Src kinase or the protein tyrosine phosphatase inhibitor bpV(phen) increased Kv4.3 peak current amplitude. In conclusion, our findings provide evidence that c-Src-induced Kv4.3 channel activation involves their association in a macromolecular complex and suggest a role for c-Src-Kv4.3 pathway in regulating cardiac and neuronal excitability.
Estrogen Receptor Folding Modulates cSrc Kinase SH2 Interaction via a Helical Binding Mode.
Nieto, Lidia; Tharun, Inga M; Balk, Mark; Wienk, Hans; Boelens, Rolf; Ottmann, Christian; Milroy, Lech-Gustav; Brunsveld, Luc
2015-11-20
The estrogen receptors (ERs) feature, next to their transcriptional role, important nongenomic signaling actions, with emerging clinical relevance. The Src Homology 2 (SH2) domain mediated interaction between cSrc kinase and ER plays a key role in this; however the molecular determinants of this interaction have not been elucidated. Here, we used phosphorylated ER peptide and semisynthetic protein constructs in a combined biochemical and structural study to, for the first time, provide a quantitative and structural characterization of the cSrc SH2-ER interaction. Fluorescence polarization experiments delineated the SH2 binding motif in the ER sequence. Chemical shift perturbation analysis by nuclear magnetic resonance (NMR) together with molecular dynamics (MD) simulations allowed us to put forward a 3D model of the ER-SH2 interaction. The structural basis of this protein-protein interaction has been compared with that of the high affinity SH2 binding sequence GpYEEI. The ER features a different binding mode from that of the "two-pronged plug two-hole socket" model in the so-called specificity determining region. This alternative binding mode is modulated via the folding of ER helix 12, a structural element directly C-terminal of the key phosphorylated tyrosine. The present findings provide novel molecular entries for understanding nongenomic ER signaling and targeting the corresponding disease states.
EG-1 interacts with c-Src and activates its signaling pathway.
Lu, Ming; Zhang, Liping; Sartippour, Maryam R; Norris, Andrew J; Brooks, Mai N
2006-10-01
EG-1 is significantly elevated in breast, colorectal, and prostate cancers. Overexpression of EG-1 stimulates cellular proliferation, and targeted inhibition blocks mouse xenograft tumor growth. To further clarify the function of EG-1, we investigated its role in c-Src activation. We observed that EG-1 overexpression results in activation of c-Src, but found no evidence that EG-1 is a direct Src substrate. EG-1 also binds to other members of the Src family. Furthermore, EG-1 shows interaction with multiple other SH3- and WW-containing molecules involved in various signaling pathways. These observations suggest that EG-1 may be involved in signaling pathways including c-Src activation.
Estrogen Receptor Folding Modulates cSrc Kinase SH2 Interaction via a Helical Binding Mode
Nieto, Lidia; Tharun, Inga M; Balk, Mark; Wienk, Hans; Boelens, Rolf; Ottmann, Christian; Milroy, Lech-Gustav; Brunsveld, Luc
2015-01-01
The estrogen receptors (ERs) feature, next to their transcriptional role, important nongenomic signaling actions, with emerging clinical relevance. The Src Homology 2 (SH2) domain mediated interaction between cSrc kinase and ER plays a key role in this; however the molecular determinants of this
Estrogen receptor folding modulates cSrc kinase SH2 interaction via a helical binding mode
Nieto, L.; Tharun, I.M.; Balk, M.; Wienk, H.; Boelens, R.; Ottmann, C.; Milroy, L.-G.; Brunsveld, L.
2015-01-01
The estrogen receptors (ERs) feature, next to their transcriptional role, important nongenomic signaling actions, with emerging clinical relevance. The Src Homology 2 (SH2) domain mediated interaction between cSrc kinase and ER plays a key role in this; however the molecular determinants of this
Significance of ERa and c-Src Interaction in the Progression of Hormone Independent Breast Cancer
2005-12-01
defects in estrogen signaling [1]. Because of global defects in estrogen signaling observed in these c-Src deficient mice, we have recently generated...1998). Interestingly, the region of the kinase domain of ErbB-2 that correlates with c-Src association, referred to as TK2 (Segatto et al., 1991...ductive organs that are dependent on ERa in c-Src- deficient mice. We show that the loss of the c-Src tyrosine kinase correlates with defects in ductal
International Nuclear Information System (INIS)
Kim, Min Soo; Kim, Gyoung Mi; Choi, Yun-Jeong; Kim, Hye Joung; Kim, Yoo-Jin; Jin, Wook
2013-01-01
Highlights: •TrkA was mainly present in other types of leukemia including AML. •TrkA enhances the survival of leukemia by activation of PI3K/Akt pathway. •TrkA induced significant hematological malignancies by inducing PLK-1 and Twist-1. •TrkA acted as a key regulator of leukemogenesis and survival through c-Src activation. -- Abstract: Although the kinase receptor TrkA may play an important role in acute myeloid leukemia (AML), its involvement in other types of leukemia has not been reported. Furthermore, how it contributes to leukemogenesis is unknown. Here, we describe a molecular network that is important for TrkA function in leukemogenesis. We found that TrkA is frequently overexpressed in other types of leukemia such as acute lymphoblastic leukemia (ALL), chronic myelogenous leukemia (CML), and myelodysplastic syndrome (MDS) including AML. In addition, TrkA was overexpressed in patients with MDS or secondary AML evolving from MDS. TrkA induced significant hematological malignancies by inducing PLK-1 and Twist-1, and enhanced survival and proliferation of leukemia, which was correlated with activation of the phosphatidylinositol 3-kinase/Akt/mTOR pathway. Moreover, endogenous TrkA associated with c-Src complexes was detected in leukemia. Suppression of c-Src activation by TrkA resulted in markedly decreased expression of PLK-1 and Twist-1 via suppressed activation of Akt/mTOR cascades. These data suggest that TrkA plays a key role in leukemogenesis and reveal an unexpected physiological role for TrkA in the pathogenesis of leukemia. These data have important implications for understanding various hematological malignancies
Energy Technology Data Exchange (ETDEWEB)
Kim, Min Soo; Kim, Gyoung Mi; Choi, Yun-Jeong [Department of Molecular Medicine, School of Medicine, Gachon University, Incheon 406-840 (Korea, Republic of); Kim, Hye Joung [Department of Hematology, Catholic Blood and Marrow Transplantation Center, Seoul St. Mary’s Hospital, College of Medicine, The Catholic University of Korea, Seoul 137-701 (Korea, Republic of); Kim, Yoo-Jin, E-mail: yoojink@catholic.ac.kr [Department of Hematology, Catholic Blood and Marrow Transplantation Center, Seoul St. Mary’s Hospital, College of Medicine, The Catholic University of Korea, Seoul 137-701 (Korea, Republic of); Jin, Wook, E-mail: jinwo@gachon.ac.kr [Department of Molecular Medicine, School of Medicine, Gachon University, Incheon 406-840 (Korea, Republic of); Gachon Medical Research Institute, Gil Medical Center, Incheon 405-760 (Korea, Republic of)
2013-11-15
Highlights: •TrkA was mainly present in other types of leukemia including AML. •TrkA enhances the survival of leukemia by activation of PI3K/Akt pathway. •TrkA induced significant hematological malignancies by inducing PLK-1 and Twist-1. •TrkA acted as a key regulator of leukemogenesis and survival through c-Src activation. -- Abstract: Although the kinase receptor TrkA may play an important role in acute myeloid leukemia (AML), its involvement in other types of leukemia has not been reported. Furthermore, how it contributes to leukemogenesis is unknown. Here, we describe a molecular network that is important for TrkA function in leukemogenesis. We found that TrkA is frequently overexpressed in other types of leukemia such as acute lymphoblastic leukemia (ALL), chronic myelogenous leukemia (CML), and myelodysplastic syndrome (MDS) including AML. In addition, TrkA was overexpressed in patients with MDS or secondary AML evolving from MDS. TrkA induced significant hematological malignancies by inducing PLK-1 and Twist-1, and enhanced survival and proliferation of leukemia, which was correlated with activation of the phosphatidylinositol 3-kinase/Akt/mTOR pathway. Moreover, endogenous TrkA associated with c-Src complexes was detected in leukemia. Suppression of c-Src activation by TrkA resulted in markedly decreased expression of PLK-1 and Twist-1 via suppressed activation of Akt/mTOR cascades. These data suggest that TrkA plays a key role in leukemogenesis and reveal an unexpected physiological role for TrkA in the pathogenesis of leukemia. These data have important implications for understanding various hematological malignancies.
Roles of Raft-Anchored Adaptor Cbp/PAG1 in Spatial Regulation of c-Src Kinase
Oneyama, Chitose; Suzuki, Takashi; Okada, Masato
2014-01-01
The tyrosine kinase c-Src is upregulated in numerous human cancers, implying a role for c-Src in cancer progression. Previously, we have shown that sequestration of activated c-Src into lipid rafts via a transmembrane adaptor, Cbp/PAG1, efficiently suppresses c-Src-induced cell transformation in Csk-deficient cells, suggesting that the transforming activity of c-Src is spatially regulated via Cbp in lipid rafts. To dissect the molecular mechanisms of the Cbp-mediated regulation of c-Src, a combined analysis was performed that included mathematical modeling and in vitro experiments in a c-Src- or Cbp-inducible system. c-Src activity was first determined as a function of c-Src or Cbp levels, using focal adhesion kinase (FAK) as a crucial c-Src substrate. Based on these experimental data, two mathematical models were constructed, the sequestration model and the ternary model. The computational analysis showed that both models supported our proposal that raft localization of Cbp is crucial for the suppression of c-Src function, but the ternary model, which includes a ternary complex consisting of Cbp, c-Src, and FAK, also predicted that c-Src function is dependent on the lipid-raft volume. Experimental analysis revealed that c-Src activity is elevated when lipid rafts are disrupted and the ternary complex forms in non-raft membranes, indicating that the ternary model accurately represents the system. Moreover, the ternary model predicted that, if Cbp enhances the interaction between c-Src and FAK, Cbp could promote c-Src function when lipid rafts are disrupted. These findings underscore the crucial role of lipid rafts in the Cbp-mediated negative regulation of c-Src-transforming activity, and explain the positive role of Cbp in c-Src regulation under particular conditions where lipid rafts are perturbed. PMID:24675741
Interplay of Matrix Stiffness and c-SRC in Hepatic Fibrosis.
Directory of Open Access Journals (Sweden)
Jan eGörtzen
2015-12-01
Full Text Available Introduction:In liver fibrosis activation of hepatic stellate cells (HSC comprises phenotypical change into profibrotic and myofibroplastic cells with increased contraction and secretion of extracellular matrix (ECM proteins. The small GTPase RhoA orchestrates cytoskeleton formation, migration and mobility via non-receptor tyrosine-protein kinase c-SRC (cellular sarcoma in different cells. Furthermore, RhoA and its downstream effector Rho-kinase also play a crucial role in hepatic stellate cells and hepatic fibrogenesis. Matrix stiffness promotes HSC activation via cytoskeleton modulation. This study investigated the interaction of c-SRC and RhoA under different matrix stiffness conditions.Methods:Liver fibrosis was induced in rats using bile duct ligation (BDL, thioacetamide (TAA or carbon tetrachloride (CCl4 models. mRNA levels of albumin, PDGF-R, RHOA, COL1A1 and αSMA were analyzed via qRT-PCR. Western Blots using phospho-specific antibodies against p-c-SRC418 and p-c-SRC530 analyzed the levels of activating and inactivating c-SRC respectively. LX2 cells and hepatocytes were cultured on acrylamide gels of 1kPa and 12kPa or on plastic to mimic non-fibrotic, fibrotic or cirrhotic environments, then exposed to SRC-inhibitor PP2. Overexpression of RhoA was performed by transfection using RhoA-plasmids. Additionally, samples from cirrhotic patients and controls were collected at liver transplantations and tumor resections were analyzed for RhoA and c-SRC protein expression by Western Blot.Results:Transcription of albumin and RhoA was decreased, whereas transcription and activation of c-SRC was increased in hepatocytes cultured on 12kPa compared to 1kPa gels. LX2 cells cultured on 12kPa gels showed upregulation of RHOA, COL1A1 and αSMA mRNA levels. Inhibition of c-SRC by PP2 in LX2 cells led to an increase in COL1A1 and αSMA most prominently in 12kPa gels. In LX2 cells with RhoA overexpression, c-SRC inhibition by PP2 failed to improve fibrosis
DEFF Research Database (Denmark)
Rösner, Heike I; Poulsen, Flemming Martin
2010-01-01
-src loop to the third beta-strand, exhibited an apparent helicity of nearly 45%. Furthermore, the RT loop and the diverging turn appeared to adopt non-native-like helical conformations. Interestingly, none of the residues found in transient helical conformations exhibited significant varphi-values [Riddle......Secondary chemical shift analysis has been used to characterize the unfolded state of acid-denatured c-src SH3. Even though native c-src SH3 adopts an all-beta fold, we found evidence of transient helicity in regions corresponding to native loops. In particular, residues 40-46, connecting the n...
Trihydrophobin 1 Phosphorylation by c-Src Regulates MAPK/ERK Signaling and Cell Migration
Wu, Weibin; Sun, Zhichao; Wu, Jingwen; Peng, Xiaomin; Gan, Huacheng; Zhang, Chunyi; Ji, Lingling; Xie, Jianhui; Zhu, Haiyan; Ren, Shifang
2012-01-01
c-Src activates Ras-MAPK/ERK signaling pathway and regulates cell migration, while trihydrophobin 1 (TH1) inhibits MAPK/ERK activation and cell migration through interaction with A-Raf and PAK1 and inhibiting their kinase activities. Here we show that c-Src interacts with TH1 by GST-pull down assay, coimmunoprecipitation and confocal microscopy assay. The interaction leads to phosphorylation of TH1 at Tyr-6 in vivo and in vitro. Phosphorylation of TH1 decreases its association with A-Raf and PAK1. Further study reveals that Tyr-6 phosphorylation of TH1 reduces its inhibition on MAPK/ERK signaling, enhances c-Src mediated cell migration. Moreover, induced tyrosine phosphorylation of TH1 has been found by EGF and estrogen treatments. Taken together, our findings demonstrate a novel mechanism for the comprehensive regulation of Ras/Raf/MEK/ERK signaling and cell migration involving tyrosine phosphorylation of TH1 by c-Src. PMID:22238675
Directory of Open Access Journals (Sweden)
Julio Bacarizo
Full Text Available The SH3 domain of the c-Src tyrosine kinase (c-Src-SH3 aggregates to form intertwined dimers and amyloid fibrils at mild acid pHs. In this work, we show that a single mutation of residue Gln128 of this SH3 domain has a significant effect on: (i its thermal stability; and (ii its propensity to form amyloid fibrils. The Gln128Glu mutant forms amyloid fibrils at neutral pH but not at mild acid pH, while Gln128Lys and Gln128Arg mutants do not form these aggregates under any of the conditions assayed. We have also solved the crystallographic structures of the wild-type (WT and Gln128Glu, Gln128Lys and Gln128Arg mutants from crystals obtained at different pHs. At pH 5.0, crystals belong to the hexagonal space group P6₅22 and the asymmetric unit is formed by one chain of the protomer of the c-Src-SH3 domain in an open conformation. At pH 7.0, crystals belong to the orthorhombic space group P2₁2₁2₁, with two molecules at the asymmetric unit showing the characteristic fold of the SH3 domain. Analysis of these crystallographic structures shows that the residue at position 128 is connected to Glu106 at the diverging β-turn through a cluster of water molecules. Changes in this hydrogen-bond network lead to the displacement of the c-Src-SH3 distal loop, resulting also in conformational changes of Leu100 that might be related to the binding of proline rich motifs. Our findings show that electrostatic interactions and solvation of residues close to the folding nucleation site of the c-Src-SH3 domain might play an important role during the folding reaction and the amyloid fibril formation.
Energy Technology Data Exchange (ETDEWEB)
Huang, Chunfa, E-mail: chunfa.huang@case.edu [Louis Stokes Cleveland Veteran Affairs Medical Center, Case Western Reserve University (United States); Department of Medicine, Case Western Reserve University (United States); Rammelkamp Center for Research and Education, MetroHealth System Campus, Cleveland, OH 44106 (United States); Bruggeman, Leslie A. [Department of Medicine, Case Western Reserve University (United States); Rammelkamp Center for Research and Education, MetroHealth System Campus, Cleveland, OH 44106 (United States); Hydo, Lindsey M. [Louis Stokes Cleveland Veteran Affairs Medical Center, Case Western Reserve University (United States); Miller, R. Tyler [Louis Stokes Cleveland Veteran Affairs Medical Center, Case Western Reserve University (United States); Department of Medicine, Case Western Reserve University (United States); Rammelkamp Center for Research and Education, MetroHealth System Campus, Cleveland, OH 44106 (United States)
2012-06-10
The glomerular capillary wall, composed of endothelial cells, the glomerular basement membrane and the podocytes, is continually subjected to hemodynamic force arising from tractional stress due to blood pressure and shear stress due to blood flow. Exposure of glomeruli to abnormal hemodynamic force such as hyperfiltration is associated with glomerular injury and progressive renal disease, and the conversion of mechanical stimuli to chemical signals in the regulation of the process is poorly understood in podocytes. By examining DNA fragmentation, apoptotic nuclear changes and cytochrome c release, we found that shear stress induced cell apoptosis in cultured podocytes. Meanwhile, podocytes exposed to shear stress also stimulated c-Src phosphorylation, phospholipase D (PLD) activation and mammalian target of rapamycin (mTOR) signaling. Using the antibodies against c-Src, PLD{sub 1}, and PLD{sub 2} to perform reciprocal co-immunoprecipitations and in vitro PLD activity assay, our data indicated that c-Src interacted with and activated PLD{sub 1} but not PLD{sub 2}. The inhibition of shear stress-induced c-Src phosphorylation by PP{sub 2} (a specific inhibitor of c-Src kinase) resulted in reduced PLD activity. Phosphatidic acid, produced by shear stress-induced PLD activation, stimulated mTOR signaling, and caused podocyte hypertrophy and apoptosis.
Interplay of Matrix Stiffness and c-SRC in Hepatic Fibrosis
DEFF Research Database (Denmark)
Görtzen, Jan; Schierwagen, Robert; Bierwolf, Jeanette
2015-01-01
. This study investigated the interaction of c-SRC and RhoA under different matrix stiffness conditions. METHODS: Liver fibrosis was induced in rats using bile duct ligation (BDL), thioacetamide (TAA) or carbon tetrachloride (CCl4) models. mRNA levels of albumin, PDGF-R, RHOA, COL1A1, and αSMA were analyzed......INTRODUCTION: In liver fibrosis activation of hepatic stellate cells (HSC) comprises phenotypical change into profibrotic and myofibroplastic cells with increased contraction and secretion of extracellular matrix (ECM) proteins. The small GTPase RhoA orchestrates cytoskeleton formation, migration......, and mobility via non-receptor tyrosine-protein kinase c-SRC (cellular sarcoma) in different cells. Furthermore, RhoA and its downstream effector Rho-kinase also play a crucial role in hepatic stellate cells and hepatic fibrogenesis. Matrix stiffness promotes HSC activation via cytoskeleton modulation...
International Nuclear Information System (INIS)
Peña, Delfina; Pontillo, Carolina; García, María Alejandra; Cocca, Claudia; Alvarez, Laura; Chiappini, Florencia; Bourguignon, Nadia; Frahm, Isabel; Bergoc, Rosa; Kleiman de Pisarev, Diana; Randi, Andrea
2012-01-01
Hexachlorobenzene (HCB) is an organochlorine pesticide that acts as an endocrine disruptor in humans and rodents. The development of breast cancer strongly depends on endocrine conditions modulated by environmental factors. We have demonstrated that HCB is a tumor co-carcinogen in rats and an inducer of proliferation in MCF-7 cells, in an estrogen receptor α (ERα)-dependent manner, and of migration in MDA-MB-231 breast cancer cell line. In the present study, we examined HCB effect on c-Src/human epidermal growth factor receptor (HER1) and ERα signaling pathways in mammary glands and in N-nitroso-N-methylurea (NMU)-induced mammary tumors in rats. Furthermore, we evaluated histopathological changes and serum hormone levels. Rats were separated into four groups: control, HCB (100 mg/kg b.w.), NMU (50 mg/kg b.w.) and NMU-HCB. Our data show that HCB increases c-Src and HER1 activation, c-Src/HER1 association, and Y699-STAT5b and ERK1/2 phosphorylation in mammary glands. HCB also enhances Y537-ERα phosphorylation and ERα/c-Src physical interaction. In tumors, HCB also induces c-Src and HER1 activation, c-Src/HER1 association, as well as T308-Akt and Y699-STAT5b phosphorylation. In addition, the pesticide increases ERα protein content and decreases p-Y537-ERα levels and ERα/c-Src association in tumors. HCB increases serum 17-beta estradiol and prolactin contents and decreases progesterone, FSH and LH levels in rats without tumors, while the opposite effect was observed in rats with tumors. Taken together, our results indicate that HCB induces an estrogenic effect in mammary gland, increasing c-Src/HER1 and ERα signaling pathways. HCB stimulates c-Src/HER1 pathway, but decreases ERα activity in tumors, appearing to shift them towards a higher malignancy phenotype.
International Nuclear Information System (INIS)
Piserchio, Andrea; Ghose, Ranajeet; Cowburn, David
2009-01-01
Progression of a host of human cancers is associated with elevated levels of expression and catalytic activity of the Src family of tyrosine kinases (SFKs), making them key therapeutic targets. Even with the availability of multiple crystal structures of active and inactive forms of the SFK catalytic domain (CD), a complete understanding of its catalytic regulation is unavailable. Also unavailable are atomic or near-atomic resolution information about their interactions, often weak or transient, with regulating phosphatases and downstream targets. Solution NMR, the biophysical method best suited to tackle this problem, was previously hindered by difficulties in bacterial expression and purification of sufficient quantities of soluble, properly folded protein for economically viable labeling with NMR-active isotopes. Through a choice of optimal constructs, co-expression with chaperones and optimization of the purification protocol, we have achieved the ability to bacterially produce large quantities of the isotopically-labeled CD of c-Src, the prototypical SFK, and of its activating Tyr-phosphorylated form. All constructs produce excellent spectra allowing solution NMR studies of this family in an efficient manner
Mechanism of c-Src Synergy with the EGFR in Breast Cancer
National Research Council Canada - National Science Library
Tice, David
1997-01-01
.... To gain further insights into the mechanism of c-Src synergy with the EGFR, stable cell lines containing various c-Src mutants and overexpressed wt EGFR were generated and examined for tumorigenic...
Moroco, Jamie A; Baumgartner, Matthew P; Rust, Heather L; Choi, Hwan Geun; Hur, Wooyoung; Gray, Nathanael S; Camacho, Carlos J; Smithgall, Thomas E
2015-08-01
The c-Src tyrosine kinase co-operates with the focal adhesion kinase to regulate cell adhesion and motility. Focal adhesion kinase engages the regulatory SH3 and SH2 domains of c-Src, resulting in localized kinase activation that contributes to tumor cell metastasis. Using assay conditions where c-Src kinase activity required binding to a tyrosine phosphopeptide based on the focal adhesion kinase SH3-SH2 docking sequence, we screened a kinase-biased library for selective inhibitors of the Src/focal adhesion kinase peptide complex versus c-Src alone. This approach identified an aminopyrimidinyl carbamate compound, WH-4-124-2, with nanomolar inhibitory potency and fivefold selectivity for c-Src when bound to the phospho-focal adhesion kinase peptide. Molecular docking studies indicate that WH-4-124-2 may preferentially inhibit the 'DFG-out' conformation of the kinase active site. These findings suggest that interaction of c-Src with focal adhesion kinase induces a unique kinase domain conformation amenable to selective inhibition. © 2014 John Wiley & Sons A/S.
International Nuclear Information System (INIS)
Zhao, Song; Li, Hongdan; Wang, Qingjun; Su, Chang; Wang, Guan; Song, Huijuan; Zhao, Liang; Luan, Zhidong; Su, Rongjian
2015-01-01
Emerging data have suggested that cell surface GRP78 is a multifunctional receptor and has been linked to proliferative and antiapoptotic signaling cascades. Activated α 2− macroglobin (α 2 M*) is a natural circulating ligand of cell surface GRP78. Association of cell surface GRP78 with α 2 M* is involved in the regulation of cell proliferation, survival and apoptosis in human cancers. The invasion and metastasis of HCC cells were examined using transwell and wound healing assay; Cell surface expression of GRP78 was detected by in cell western assay. Translocation of GRP78 from cytosol to cell surface was observed by transfection of GRP78-EGFP plus TRIRC-WGA staining. The levels of Src, phosphor-Src, FAK, phospho-FAK, EGFR, phospho-EGFR, phospho-Cortactin, phospho-Paxillin were determined by western blot. Cell surface expression of GRP78 in HCC tissue samples was observed by immunofluorescence. The distribution of Paxillin and Cortactin in HCC cells was also observed by immunofluorescence. The interaction between GRP78 and Src were detected by far-western blot, co-immunoprecipitation and GST pulldown. GRP78 mRNA was detected by RT-PCR. In the current study, we showed that association of cell surface GRP78 with α 2 M* stimulated the invasion and metastasis of HCC. Cell surface GRP78 could interact directly with c-Src, promoted the phosphorylation of c-Src at Y416. Inhibition of the tyrosine kinase activity of c-Src with PP2 reverted the stimulatory effect caused by association of cell surface GRP78 with α 2 M*. Moreover, association of cell surface GRP78 with α 2 M* facilitates the interaction between EGFR and c-Src and consequently phosphorylated EGFR at Y1101 and Y845, promoting the invasion and metastasis of HCCs. However, inhibition of the tyrosine kinase of c-Src do not affect the interaction between EGFR and Src. c-Src plays a critical role in the invasion and metastasis of HCC induced by association of cell surface GRP78 with α 2 M*. Cell surface GRP
Elevated c-Src and c-Yes expression in malignant skin cancers
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Lee Jang
2010-08-01
Full Text Available Abstracts Background Src family kinases (SFKs play an important role in cancer proliferation, survival, motility, invasiveness, metastasis, and angiogenesis. Among the SFKs, c-Src and c-Yes are particularly over-expressed or hyper-activated in many human epithelial cancers. However, only a few studies have attempted to define the expression and role of c-Src and c-Yes in cutaneous carcinomas. Objectives To investigate the expression of c-Src and c-Yes in cutaneous carcinomas to include malignant melanoma (MM, squamous cell carcinoma (SCC and basal cell carcinoma (BCC. Methods We examined 6 normal skin tissues and 18 malignant skin tumor tissues using western blotting for the expression of c-Src and c-Yes. In another set, 16 specimens of MM, 16 SCCs and 16 BCCs were analyzed for the expression of c-Src and c-Yes using immunohistochemical staining. Results Western blotting showed that c-Src was expressed in all malignant skin tumors, but not in normal skin, while c-Yes was expressed in MM and SCC, but not in BCC and normal skin. Immunohistochemical staining results of c-Src and c-Yes in MM, SCC, and BCC mirrored those of the western blot analysis. Conclusions c-Src, rather than c-Yes, plays a key role in the proliferation and progression of malignant skin cancers.
Mechanism of c-Src Synergy with the EGFR In Breast Cancer
National Research Council Canada - National Science Library
Tice, David
1999-01-01
... on tumorigenicity and growth of breast tumor cells. Furthermore, we have discovered a mechanism of c-Src synergy with the EGFR and located specific points at which the pathway can be interdicted...
Increased activity of c-Src and Csk in fibroblasts transformed by v-src oncogene
Czech Academy of Sciences Publication Activity Database
Tuháčková, Zdena; Vojtěchová, Martina; Hlaváček, Jan; Ruzzene, M.; Sovová, Vlasta; Pinna, L. A.
2002-01-01
Roč. 290, č. 42 (2002), s. 790-795 ISSN 0006-291X R&D Projects: GA ČR GV312/96/K205; GA ČR GA301/00/0269; GA MZd NC5428 Institutional research plan: CEZ:AV0Z5052915 Keywords : c-Src, v-Src oncoprotein * C-terminal c-Src kinase * Rous sarcoma virus Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 2.935, year: 2002
Bai, Zhengya; Hou, Shasha; Zhang, Shilei; Li, Zhongyan; Zhou, Peng
2017-04-24
Previously, we have reported a new biomolecular phenomenon spanning between protein folding and binding, termed as self-binding peptides (SBPs), where a short peptide segment in monomeric protein functions as a molecular switch by dynamically binding to/unbinding from its cognate domain in the monomer (Yang et al. J. Chem. Inf. 2015, 55, 329-342). Here, we attempt to raise the SBP as a new class of druggable targets to regulate the biological activity and function of proteins. A case study was performed on the proto-oncogene nonreceptor tyrosine kinase, c-Src, which contains two SBPs that bind separately to SH3 and SH2 domains of the kinase. State-of-the-art molecular dynamics (MD) simulations and post binding energetics analysis revealed that disrupting the kinase-intramolecular interactions of SH3 and SH2 domains with their cognate SBP ligands can result in totally different effects on the structural dynamics of c-Src kinase architecture; targeting the SH2 domain unlocks the autoinhibitory form of the kinase-this is very similar to the pTyr527 dephosphorylation that functionally activates the kinase, whereas targeting the SH3 domain can only release the domain from the tightly packed kinase but has a moderate effect on the kinase activity. Subsequently, based on the cognate SBP sequence we computationally designed a number of SH2-binding phosphopeptides using a motif grafting strategy. Fluorescence polarization (FP) assay observed that most of the designed phosphopeptides have higher binding affinity to SH2 domain as compared to the native SBP segment (K d = 53 nM). Kinase assay identified a typical dose-response relationship of phosphopeptides against kinase activation, substantiating that disruption of SH2-SBP interaction can mimic c-Src dephosphorylation and activate the kinase. Two rationally designed phosphopeptides, namely EPQpYEEIEN and EPQpYEELEN, were determined as strong binders of SH2 domain (K d = 8.3 and 15 nM, respectively) and potent activators of
Mukesh C. Sharma
2016-01-01
A series of 34 substituted purine analogues derivatives were subjected to quantitative structure-activity relationship analyses as inhibitors of c-Src tyrosine kinase. Partial least squares regression was applied to derive QSAR models, which were further validated for statistical significance by internal and external validation. The best QSAR model developed had a good predictive correlation coefficient (r2) of 0.8319, a significant cross-validated correlation coefficient (q2) of 0.7550, and ...
Directory of Open Access Journals (Sweden)
Mukesh C. Sharma
2016-07-01
Full Text Available A series of 34 substituted purine analogues derivatives were subjected to quantitative structure-activity relationship analyses as inhibitors of c-Src tyrosine kinase. Partial least squares regression was applied to derive QSAR models, which were further validated for statistical significance by internal and external validation. The best QSAR model developed had a good predictive correlation coefficient (r2 of 0.8319, a significant cross-validated correlation coefficient (q2 of 0.7550, and an r2 for the external test set (pred_r2 of 0.7983. It was developed from the PLS method with descriptors including the SsCH3E-index, H-Donor Count, T_2_Cl_3, and negative correlation with SsOHcount. The current study provides better insight into the future design of more potent c-Src tyrosine kinase inhibitors prior to synthesis.
Mechanism of c-Src Synergy with the EGFR in Breast Cancer
National Research Council Canada - National Science Library
1998-01-01
.... Specifically, we have shown that kinase-inactive c-Src is able to inhibit tumorigenicity of the IOT 1/2 mouse fibroblast model cells by not phosphorylating the receptor on Tyr 845 in the activation loop of the kinase...
Role of c-Src inhibitor in the regulation of hepatocarcinoma cell ...
African Journals Online (AJOL)
SAM
2014-03-19
Mar 19, 2014 ... BEL-7402 cell line was used as HCC cell model for investigating the regulation of cell migration upon c-. Src inhibitors (PP2 and .... PDGF-BB were purchased from Enzo Life Sciences International,. USA; SU6656 Sigma (USA). .... Statistical analysis was done with Student's t-test for comparison of two ...
The Role of C-SRC Activation in Prostate Tumor Progression
2006-07-01
cancer cell line PANC -1 and prostrate cancer cell line PC-3 (B2-fold increase relative to control in both cell lines), while the Src inhibitory PP2 blocks...at normoxia in PANC -1 and PC-3 cells, its levels significantly increase in response to hypoxia (B4.5–8-fold induction). Inhibition of endo- genous c...Src activation in PANC -1 and PC-3 cells by PP2 drastically reduced HIF-1a levels to below those levels observed at normoxia (Figure 1a). STAT3 has
Directory of Open Access Journals (Sweden)
Thomas Kruewel
Full Text Available BACKGROUND: The non-receptor tyrosine kinases c-Abl and c-Src are overexpressed in various solid human tumours. Inhibition of their hyperactivity represents a molecular rationale in the combat of cancerous diseases. Here we examined the effects of a new family of pyrazolo [3,4-d] pyrimidines on a panel of 11 different murine lung tumour progenitor cell lines, that express stem cell markers, as well as on the human lung adenocarcinoma cell line A549, the human hepatoma cell line HepG2 and the human colon cancer cell line CaCo2 to obtain insight into the mode of action of these experimental drugs. METHODOLOGY/PRINCIPAL FINDINGS: Treatment with the dual kinase inhibitors blocked c-Abl and c-Src kinase activity efficiently in the nanomolar range, induced apoptosis, reduced cell viability and caused cell cycle arrest predominantly at G0/G1 phase while western blot analysis confirmed repressed protein expression of c-Abl and c-Src as well as the interacting partners p38 mitogen activated protein kinase, heterogenous ribonucleoprotein K, cyclin dependent kinase 1 and further proteins that are crucial for tumour progression. Importantly, a significant repression of the epidermal growth factor receptor was observed while whole genome gene expression analysis evidenced regulation of many cell cycle regulated genes as well integrin and focal adhesion kinase (FAK signalling to impact cytoskeleton dynamics, migration, invasion and metastasis. CONCLUSIONS/SIGNIFICANCE: Our experiments and recently published in vivo engraftment studies with various tumour cell lines revealed the dual kinase inhibitors to be efficient in their antitumour activity.
Band 3 tyrosine kinase in avian erythrocyte plasma membrane is immunologically related to pp60c-src
International Nuclear Information System (INIS)
Hillsgrove, D.; Shores, C.G.; Parker, J.C.; Maness, P.F.
1987-01-01
The authors have identified in the plasma membrane of the chicken erythrocyte a 60-kDa tyrosine-specific protein kinase immunologically related to the transforming protein pp60 v-src of Rous sarcoma virus. The erythrocyte protein kinase phosphorylated heavy chains of tumor-bearing rabbit (TBR) antibodies reactive with pp60 c-src at tyrosine in immune complex protein kinase assays. The kinase was identified as a 60-kDa protein by [ 35 S]methionine labeling of erythrocytes and by autophosphorylation in immune complexes. The kinase migrated on two-dimensional gel electrophoresis with an apparent pI and molecular mass similar to pp60 c-src . A plasma membrane-enriched fraction isolated from chicken red cells contained the majority of the kinase activity. Incubation of the plasma membrane fraction with [ 32 P]ATP resulted in tyrosine phosphorylation of the anion transport protein band 3. Band 3 phosphorylation was blocked by TBR antibodies, indicting that the kinase recognized by pp60 c-src antibodies was responsible for band 3 phosphorylation. These results demonstrate that the avian erythrocyte plasma membrane contains a tightly bound tyrosine-specific protein kinase identical or closely related to pp60 c-src and that this kinase is responsible for band 3 phosphorylation in vitro
Role of miR-222-3p in c-Src-Mediated Regulation of Osteoclastogenesis
Directory of Open Access Journals (Sweden)
Shinya Takigawa
2016-02-01
Full Text Available MicroRNAs (miRNAs are small non-coding RNAs that play a mostly post-transcriptional regulatory role in gene expression. Using RAW264.7 pre-osteoclast cells and genome-wide expression analysis, we identified a set of miRNAs that are involved in osteoclastogenesis. Based on in silico analysis, we specifically focused on miR-222-3p and evaluated its role in osteoclastogenesis. The results show that the inhibitor of miR-222-3p upregulated the mRNA levels of nuclear factor of activated T-cells, cytoplasmic 1 (NFATc1 and tartrate-resistant acid phosphatase (TRAP, while its mimicking agent downregulated their mRNA levels. Western blot analysis showed that its inhibitor increased the protein levels of TRAP and cathepsin K, while its mimicking agent decreased their levels. Genome-wide mRNA expression analysis in the presence and absence of receptor activator of nuclear factor κ-B ligand (RANKL predicted c-Src as a potential regulatory target of miR-222-3p. Live cell imaging using a fluorescence resonance energy transfer (FRET technique revealed that miR-222-3p acted as an inhibitor of c-Src activity, and a partial silencing of c-Src suppressed RANKL-induced expression of TRAP and cathepsin K, as well as the number of multi-nucleated osteoclasts and their pit formation. Collectively, the study herein demonstrates that miR-222-3p serves as an inhibitor of osteoclastogenesis and c-Src mediates its inhibition of cathepsin K and TRAP.
DEFF Research Database (Denmark)
Hangaard, Lise; Bouzinova, Elena; Stæhr, Christian Albeck
2017-01-01
Communication between vascular smooth muscle cells (VSMCs) is dependent on gap junctions and is regulated by the Na-K-ATPase. The Na-K-ATPase is therefore important for synchronized VSMC oscillatory activity, i.e., vasomotion. The signaling between the Na-K-ATPase and gap junctions is unknown. We...... coupling in rat mesenteric small arteries in vitro. Phosphorylation of cSrc kinase and connexin43 (Cx43) were semiquantified by Western blotting. Micromole concentration of ouabain reduced the amplitude of norepinephrine-induced vasomotion and desynchronized Ca2+ transients in VSMC in the arterial wall...
Horng, Chi-Ting; Shieh, Po-Chuen; Tan, Tzu-Wei; Yang, Wei-Hung; Tang, Chih-Hsin
2014-01-01
Chondrosarcoma, a primary malignant bone cancer, has potential for local invasion and distant metastasis, especially to the lungs. Patients diagnosed with it show poor prognosis. Paeonol (2'-hydroxy-4'-methoxyacetophenone), the main active compound of traditional Chinese remedy Paeonia lactiflora Pallas, exhibits anti-inflammatory and anti-tumor activity; whether paeonol regulates metastatic chondrosarcoma is largely unknown. Here, we find paeonol do not increase apoptosis. By contrast, at non-cytotoxic concentrations, paeonol suppresses migration and invasion of chondrosarcoma cells. We also demonstrate paeonol enhancing miR-141 expression and miR-141 inhibitor reversing paeonol-inhibited cell motility; paeonol also reduces protein kinase C (PKC)δ and c-Src kinase activity. Since paeonol inhibits migration and invasion of human chondrosarcoma via up-regulation of miR-141 via PKCδ and c-Src pathways, it thus might be a novel anti-metastasis agent for treatment of metastatic chondrosarcoma. PMID:24992595
Energy Technology Data Exchange (ETDEWEB)
Cheng, Xiu-Li [Department of Physiology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine, Peking Union Medical College, Beijing (China); Ding, Fan [Office of Scientific R& D, Tsinghua University, Beijing (China); Li, Hui; Tan, Xiao-Qiu [Department of Physiology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine, Peking Union Medical College, Beijing (China); Liu, Xiao [Department of Pathophysiology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine, Peking Union Medical College, Beijing (China); Cao, Ji-Min, E-mail: caojimin@126.com [Department of Physiology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine, Peking Union Medical College, Beijing (China); Gao, Xue, E-mail: longlongnose@163.com [Department of Pathophysiology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine, Peking Union Medical College, Beijing (China)
2015-05-29
The relationship between glutamate signaling and inflammation has not been well defined. This study aimed to investigate the role of AMPA receptor (AMPAR) in the expression and release of tumor necrosis factor-alpha (TNF-α) from macrophages and the underlying mechanisms. A series of approaches, including confocal microscopy, immunofluorescency, flow cytometry, ELISA and Western blotting, were used to estimate the expression of AMPAR and downstream signaling molecules, TNF-α release and reactive oxygen species (ROS) generation in the macrophage-like RAW264.7 cells. The results demonstrated that AMPAR was expressed in RAW264.7 cells. AMPA significantly enhanced TNF-α release from RAW264.7 cells, and this effect was abolished by CNQX (AMPAR antagonist). AMPA also induced elevation of ROS production, phosphorylation of c-Src and activation of nuclear factor (NF)-κB in RAW264.7 cells. Blocking c-Src by PP2, scavenging ROS by glutathione (GSH) or inhibiting NF-κB activation by pyrrolidine dithiocarbamate (PDTC) decreased TNF-α production from RAW264.7 cells. We concluded that AMPA promotes TNF-α release in RAW264.7 macrophages likely through the following signaling cascade: AMPAR activation → ROS generation → c-Src phosphorylation → NF-κB activation → TNF-α elevation. The study suggests that AMPAR may participate in macrophage activation and inflammation. - Highlights: • AMPAR is expressed in RAW264.7 macrophages and is upregulated by AMPA stimulation. • Activation of AMPAR stimulates TNF-α release in macrophages through the ROS-cSrc-NFκB signaling cascade. • Macrophage AMPAR signaling may play an important role in inflammation.
Thang, Nguyen Dinh; Yajima, Ichiro; Kumasaka, Mayuko Y; Ohnuma, Shoko; Yanagishita, Takeshi; Hayashi, Rumiko; Shekhar, Hossain U; Watanabe, Daisuke; Kato, Masashi
2011-01-01
Explosive increases in skin cancers have been reported in more than 36 million patients with arsenicosis caused by drinking arsenic-polluted well water. This study and previous studies showed high levels of barium as well as arsenic in the well water. However, there have been no reports showing a correlation between barium and cancer. In this study, we examined whether barium (BaCl(2)) may independently have cancer-related effects on human precancerous keratinocytes (HaCaT). Barium (5-50 µM) biologically promoted anchorage-independent growth and invasion of HaCaT cells in vitro. Barium (5 µM) biochemically enhanced activities of c-SRC, FAK, ERK and MT1-MMP molecules, which regulate anchorage-independent growth and/or invasion. A SRC kinase specific inhibitor, protein phosphatase 2 (PP2), blocked barium-mediated promotion of anchorage-independent growth and invasion with decreased c-SRC kinase activity. Barium (2.5-5 µM) also promoted anchorage-independent growth and invasion of fibroblasts (NIH3T3) and immortalized nontumorigenic melanocytes (melan-a), but not transformed cutaneous squamous cell carcinoma (HSC5 and A431) and malignant melanoma (Mel-ret) cells, with activation of c-SRC kinase. Taken together, our biological and biochemical findings newly suggest that the levels of barium shown in drinking well water independently has the cancer-promoting effects on precancerous keratinocytes, fibroblast and melanocytes in vitro.
Puri, Rajinder N; Fan, Ya-Ping; Rattan, Satish
2002-08-01
We examined the role of mitogen-activated protein kinase (p(44/42) MAPK) in ANG II-induced contraction of lower esophageal sphincter (LES) and internal anal sphincter (IAS) smooth muscles. Studies were performed in the isolated smooth muscles and cells (SMC). ANG II-induced changes in the levels of phosphorylation of different signal transduction and effector proteins were determined before and after selective inhibitors. ANG II-induced contraction of the rat LES and IAS SMC was inhibited by genistein, PD-98059 [a specific inhibitor of MAPK kinases (MEK 1/2)], herbimycin A (a pp60(c-src) inhibitor), and antibodies to pp60(c-src) and p(120) ras GTPase-activating protein (p(120) rasGAP). ANG II-induced contraction of the tonic smooth muscles was accompanied by an increase in tyrosine phosphorylation of p(120) rasGAP. These were attenuated by genistein but not by PD-98059. ANG II-induced increase in phosphorylations of p(44/42) MAPKs and caldesmon was attenuated by both genistein and PD-98059. We conclude that pp60(c-src) and p(44/42) MAPKs play an important role in ANG II-induced contraction of LES and IAS smooth muscles.
On topological RNA interaction structures.
Qin, Jing; Reidys, Christian M
2013-07-01
Recently a folding algorithm of topological RNA pseudoknot structures was presented in Reidys et al. (2011). This algorithm folds single-stranded γ-structures, that is, RNA structures composed by distinct motifs of bounded topological genus. In this article, we set the theoretical foundations for the folding of the two backbone analogues of γ structures: the RNA γ-interaction structures. These are RNA-RNA interaction structures that are constructed by a finite number of building blocks over two backbones having genus at most γ. Combinatorial properties of γ-interaction structures are of practical interest since they have direct implications for the folding of topological interaction structures. We compute the generating function of γ-interaction structures and show that it is algebraic, which implies that the numbers of interaction structures can be computed recursively. We obtain simple asymptotic formulas for 0- and 1-interaction structures. The simplest class of interaction structures are the 0-interaction structures, which represent the two backbone analogues of secondary structures.
Wang, Chao-Qun; Huang, Yu-Wen; Wang, Shih-Wei; Huang, Yuan-Li; Tsai, Chun-Hao; Zhao, Yong-Ming; Huang, Bi-Fei; Xu, Guo-Hong; Fong, Yi-Chin; Tang, Chih-Hsin
2017-01-28
Chondrosarcoma is the second most common primary malignancy of bone after myeloma and osteosarcoma. Chondrosarcoma development may be linked to angiogenesis, which is principally elicited by vascular endothelial growth factor-A (VEGF-A). The expression of VEGF-A has been recognized as a prognostic marker in angiogenesis. Amphiregulin (AR), an epidermal growth factor receptor ligand, promotes tumor proliferation, metastasis and angiogenesis. However, the role of AR in VEGF-A expression and angiogenesis in human chondrosarcoma remains largely unknown. This current study shows that AR promoted VEGF-A production and induced angiogenesis of human endothelial progenitor cells. Moreover, AR-enhanced VEGF-A expression and angiogenesis involved the FAK, c-Src and PKCδ signaling pathways, while miR-206 expression was negatively mediated by AR via the FAK, c-Src and PKCδ pathways. Our results illustrate the clinical significance between AR, VEGF-A and miR-206, as well as tumor stage, in human chondrosarcoma. AR may represent a novel therapeutic target in the metastasis and angiogenesis of chondrosarcoma. Copyright Â© 2016 Elsevier Ireland Ltd. All rights reserved.
International Nuclear Information System (INIS)
Takino, Takahisa; Tsuge, Hisashi; Ozawa, Terumasa; Sato, Hiroshi
2010-01-01
Membrane-type 1 matrix metalloproteinase (MT1-MMP) is essential for tumor invasion and growth. We show here that MT1-MMP induces extracellular signal-regulated kinase (ERK) activation in cancer cells cultured in collagen gel, which is indispensable for their proliferation. Inhibition of MT1-MMP by MMP inhibitor or small interfering RNA suppressed activation of focal adhesion kinase (FAK) and ERK in MT1-MMP-expressing cancer cells, which resulted in up-regulation of p21 WAF1 and suppression of cell growth in collagen gel. Cell proliferation was also abrogated by the inhibitor against ERK pathway without affecting FAK phosphorylation. MT1-MMP and integrin α v β 3 were shown to be involved in c-Src activation, which induced FAK and ERK activation in collagen gel. These MT1-MMP-mediated signal transductions were paxillin dependent, as knockdown of paxillin reduced cell growth and ERK activation, and co-expression of MT1-MMP with paxillin induced ERK activation. The results suggest that MT1-MMP contributes to proliferation of cancer cells in the extracellular matrix by activating ERK through c-Src and paxillin.
Structure from interaction events
de Nooy, W.
2015-01-01
In this contribution to the colloquium, I argue why and how I lost interest in the overall structure of social networks even though Big Data techniques are increasingly simplifying the collection, organisation, and analysis of ever larger networks. The challenge that Big Data techniques pose to the
Fluid-structure interaction of submerged structures
International Nuclear Information System (INIS)
Tang, H.T.; Becker, E.B.; Taylor, L.M.
1979-01-01
The purpose of the paper is to investigate fluid-structure interaction (FSI) of submerged structures in a confined fluid-structure system. Our particular interest is the load experienced by a rigid submerged structure subject to a pressure excitation in a fluid domain bounded by a structure which is either flexible or rigid. The objective is to see whether the load experienced by the submerged structure will be influenced by its confinement conditions. This investigation is intended to provide insight into the characteristics of FSI and answer the question as to whether one can obtain FSI independent data by constructing a small scale rigid submerged structure inside a flexible fluid-structure system. (orig.)
The structure of weak interaction
International Nuclear Information System (INIS)
Zee, A.
1977-01-01
The effect of introducing righthanded currents on the structure of weak interaction is discussed. The ΔI=1/2 rule is in the spotlight. The discussion provides an interesting example in which the so-called Iizuka-Okubo-Zweing rule is not only evaded, but completely negated
Dynamic Soil-Structure-Interaction
DEFF Research Database (Denmark)
Kellezi, Lindita
1998-01-01
The aim of this thesis is to investigate and develop alternative methods of analyzing problems in dynamic soil-structure-interaction. The main focus is the major difficulty posed by such an analysis - the phenomenon of waves which radiate outward from the excited structures towards infinity....... In numerical calculations, only a finite region of the foundation metium is analyzed and something is done to prevent the outgoing radiating waves to reflect from the regions's boundary. The prosent work concerns itself with the study of such effects, using the finite element method, and artificial...... transmitting boundary at the edges of the computational mesh. To start with, an investigation of the main effects of the interaction phenomena is carried out employing a widely used model, considering dynamic stiffness of the unbounded soil as frequency independent. Then a complete description...
Directory of Open Access Journals (Sweden)
Jui-Chieh Chen
Full Text Available Bone morphogenic protein (BMP-7 is a member of the transforming growth factor (TGF-beta superfamily, which is originally identified based on its ability to induce cartilage and bone formation. In recent years, BMP-7 is also defined as a potent promoter of cell motility, invasion, and metastasis. However, there is little knowledge of the role of BMP-7 and its cellular function in chondrosarcoma cells. In the present study, we investigated the biological impact of BMP-7 on cell motility using transwell assay. In addition, the intracellular signaling pathways were also investigated by pharmacological and genetic approaches. Our results demonstrated that treatment with exogenous BMP-7 markedly increased cell migration by activating c-Src/PI3K/Akt/IKK/NF-κB signaling pathway, resulting in the transactivation of αvβ3 integrin expression. Indeed, abrogation of signaling activation, by chemical inhibition or expression of a kinase dead form of the protein attenuated BMP-7-induced expression of integrin αvβ3 and cell migration. These findings may provide a useful tool for diagnostic/prognostic purposes and even therapeutically in late-stage chondrosarcoma as an anti-metastatic agent.
Directory of Open Access Journals (Sweden)
Chi-Ming Wu
2013-01-01
Full Text Available Chondrosarcoma is a primary malignant bone cancer, with a potent capacity to invade locally and cause distant metastasis, especially to the lungs. Patients diagnosed with chondrosarcoma have poor prognosis. Berberine, an active component of the Ranunculaceae and Papaveraceae families of plant, has been proven to induce tumor apoptosis and to prevent the metastasis of cancer cells. However, the effects of berberine in human chondrosarcoma are largely unknown. In this study, we found that berberine did not induce cell apoptosis in human primary chondrocytes and chondrosarcoma cells. However, at noncytotoxic concentrations, berberine reduced the migration and invasion of chondrosarcoma cancer cells. Integrins are the major adhesive molecules in mammalian cells and have been associated with the metastasis of cancer cells. We also found that incubation of chondrosarcoma cells with berberine reduced mRNA transcription for, and cell surface expression of, the αvβ3 integrin, with additional inhibitory effects on PKCδ, c-Src, and NF-κB activation. Thus, berberine may be a novel antimetastasis agent for the treatment of metastatic chondrosarcoma.
Structure-soil-structure interaction of nuclear structures
International Nuclear Information System (INIS)
Snyder, M.D.; Shaw, D.E.; Hall, J.R. Jr.
1975-01-01
Structure-to-structure interaction resulting from coupling of the foundations through the soil has traditionally been neglected in the seismic analysis of nuclear power plants. This paper examines the phenomenon and available methods of analytical treatment, including finite element and lumped parameter methods. Finite element techniques have lead to the treatment of through soil coupling of structural foundations using two dimensional plane strain models owing to the difficulty of considering three dimensional finite element models. The coupling problem is treated by means of a lumped parameter model derived from elastic half-space considerations. Consequently, the method is applicable to the interaction of any number of foundations and allows the simultaneous application of tri-directional excitation. The method entails the idealization of interacting structures as lumped mass/shear beams with lumped soil springs and dampers beneath each foundation plus a coupling matrix between the interacting foundations. Utilizing classical elastic half-space methods, the individual foundation soil springs and dampers may be derived, accounting for the effects of embedment and soil layering, analogous to the methods used for single soil-structure, interaction problems. The coupling matrix is derived by generating influence coefficients based on the geometric relationship of the structures using classical half-space solutions. The influence coefficients form the coupling flexibility matrix which is inverted to yield the coupling matrix for the lumped parameter model
QCD Structure of Nuclear Interactions
Energy Technology Data Exchange (ETDEWEB)
Granados, Carlos [Florida Intl Univ., Miami, FL (United States)
2011-05-25
This dissertation investigated selected processes involving baryons and nuclei in hard scattering reactions. Through these processes, this work explored the constituent structure of baryons and the mechanisms through which the interactions between these constituents ultimately control the selected reactions. First, hard nucleon-nucleon elastic scattering was studied considering the quark exchange (QE) between the nucleons to be the dominant mechanism of interaction in the constituent picture. It was found that an angular asymmetry exhibited by proton-neutron (pn) elastic scattering data is explained within this framework if a quark-diquark picture dominates the nucleon's structure instead of a more traditional SU(6) model. The latter yields an asymmetry around 90 deg center of mass scattering with a sign opposite to what is experimentally observed. The second process is the hard breakup by a photon of a nucleon-nucleon system in light nuclei. Proton-proton (pp) and pn breakup in ^{3}He, and double Δ-isobars production in deuteron breakup were analyzed in the hard rescattering model (HRM), which in conjunction with the QE mechanism provides a QCD description of the reaction. Cross sections for both channels in ^{3}He photodisintegration were computed without the need of a fitting parameter. The results presented here for pp breakup show excellent agreement with recent experimental data. In double Δ-isobars production in deuteron breakup, HRM angular distributions for the two double Δ channels were compared to the pn channel and to each other. An important prediction from this study is that the Δ^{++} Δ^{-} channel consistently dominates Δ^{+}Δ^{0}, which is in contrast with models that unlike the HRM consider a double Δ system in the initial state of the interaction. For such models both channels should have the same strength.
Fluid structure interaction with sloshing
International Nuclear Information System (INIS)
Belytschko, T.B.; Liu, W.K.
1983-01-01
In this paper, three different formulations for fluid-structure interaction with sloshing are discussed. When the surface displacements are large, the problems are nonlinear, and Arbitrary Lagrangian Eulerian (ALE) methods and direct time integration are most appropriate. Explicit direct time integration has the disadvantage of a limited time-step whereas implicit method has the disadvantage of nonconvergence and high computational cost. A mixed time method which employs E-mE (explicit-multiple explicit) integration for obtaining the velocity and free surface displacement and I-mI (implicit-multiple implicit) integration for obtaining the pressure is described. An iterative solution procedure is used to enhance the efficiency of the implicit solution procedure as well as to reduce the computer storage. For linear problems, the surface wave effects can be approximated by a perturbation method on the body force term if the surface displacements are small. Furthermore, if the fluid can be idealized as inviscid, incompressible and irrotational, the pressure, velocity, and free surface displacement variables can be eliminated via a velocity potential formulation. (orig.)
Topology of RNA-RNA interaction structures
DEFF Research Database (Denmark)
Andersen, Jørgen Ellegaard; Huang, Fenix Wenda; Penner, Robert
2012-01-01
Abstract The topological filtration of interacting RNA complexes is studied, and the role is analyzed of certain diagrams called irreducible shadows, which form suitable building blocks for more general structures. We prove that, for two interacting RNAs, called interaction structures, there exist...
International Nuclear Information System (INIS)
Timmermans-Sprang, Elpetra P. M.; Gracanin, Ana; Mol, Jan A.
2015-01-01
Elevated basal, ligand-independent, Wnt signaling in some canine breast cancer cells is not caused by classical mutations in APC, β-Catenin or GSK3β but, at least partially, by enhanced LEF1 expression. We examined the expression and function of EGFR/HER-regulated pathways on the ligand-independent Wnt signaling. Twelve canine mammary tumor cell lines with previously reported differential basal Wnt activity were used. The expression levels of genes related to EGF-signaling were analyzed by cluster analysis. Cell lines with a combined overexpression of EGF-related genes and enhanced basal Wnt activity were treated with PI3K/mTor or cSRC inhibitors or transfected with a construct expressing wild-type PTEN. Subsequently, effects were measured on Wnt activity, cell proliferation, gene expression and protein level. High basal Wnt/LEF1 activity was associated with overexpression of HER2/3, ID1, ID2, RAC1 and HSP90 together with low to absent cMET and PTEN mRNA expression, suggesting a connection between Wnt- and HER-signaling pathways. Inhibition of the HER-regulated PI3K/mTor pathway using the dual PI3K/mTor inhibitor BEZ235 or the mTor inhibitor Everolimus® resulted in reduced cell proliferation. In the cell line with high basal Wnt activity, however, an unexpected further increased Wnt activity was found that could be greatly reduced after inhibition of the HER-regulated cSRC activity. Inhibition of the PI3K/mTor pathway was associated with enhanced expression of β-Catenin, Axin2, MUC1, cMET, EGFR and HER2 and a somewhat increased β-Catenin protein content, whereas cSRC inhibition was associated with slightly enhanced HER3 and SLUG mRNA expression. A high protein expression of HER3 was found only in a cell line with high basal Wnt activity. High basal Wnt activity in some mammary cancer cell lines is associated with overexpression of HER-receptor related genes and HER3 protein, and the absence of PTEN. Inhibition of the PI3K/mTor pathway further stimulated
Soil-structure interaction including nonlinear soil
Gicev, Vlado
2008-01-01
There are two types of models of soil-structure system depending upon the rigidity of foundation: models with rigid and models with flexible foundation. Main features of the soil-structure interaction phenomenon: -wave scattering, -radiation damping, -reduction of the system frequencies. In this presentation, the influence of interaction on the development of nonlinear zones in the soil is studied.
Fluid Structure Interaction for Hydraulic Problems
International Nuclear Information System (INIS)
Souli, Mhamed; Aquelet, Nicolas
2011-01-01
Fluid Structure interaction plays an important role in engineering applications. Physical phenomena such as flow induced vibration in nuclear industry, fuel sloshing tank in automotive industry or rotor stator interaction in turbo machinery, can lead to structure deformation and sometimes to failure. In order to solve fluid structure interaction problems, the majority of numerical tests consists in using two different codes to separately solve pressure of the fluid and structural displacements. In this paper, a unique code with an ALE formulation approach is used to implicitly calculate the pressure of an incompressible fluid applied to the structure. The development of the ALE method as well as the coupling in a computational structural dynamic code, allows to solve more large industrial problems related to fluid structure coupling. (authors)
EPRI research on soil-structure interaction
International Nuclear Information System (INIS)
Tang, H.T.
1986-01-01
The paper briefly discusses the background of soil-structure interaction research and identifies the nuclear industry's need for a realistic, experimentally qualified soil-structure interaction analysis methodology for nuclear power plant design to reduce excessive conservatism and stabilize the licensing process. EPRI research and joint research efforts between EPRI and Niagara Mohawk Power Corporation, Taiwan Power Company, and the Japanese Century Research Institute for Electric Power Industry are outlined. As a result of these and other research efforts, improvement in soil-structure interactions methodologies is being realized
TECHNICAL NOTES SEISMIC SOIL-STRUCTURE INTERACTION ...
African Journals Online (AJOL)
dell
SEISMIC SOIL-STRUCTURE INTERACTION AS A POTENTIAL TOOL FOR. ECONOMICAL ... ground motion at the interface with the rock. The soil can .... half space have an elastic modulus of E and a mass density of ρ . .... The trial solution to.
Toolkit Design for Interactive Structured Graphics
National Research Council Canada - National Science Library
Bederson, Benjamin B; Grosjean, Jesse; Meyer, Jon
2003-01-01
.... We describe Jazz (a polylithic toolkit) and Piccolo (a monolithic toolkit), each of which we built to support interactive 2D structured graphics applications in general, and Zoomable User Interface applications in particular...
PSAIA – Protein Structure and Interaction Analyzer
Directory of Open Access Journals (Sweden)
Vlahoviček Kristian
2008-04-01
Full Text Available Abstract Background PSAIA (Protein Structure and Interaction Analyzer was developed to compute geometric parameters for large sets of protein structures in order to predict and investigate protein-protein interaction sites. Results In addition to most relevant established algorithms, PSAIA offers a new method PIADA (Protein Interaction Atom Distance Algorithm for the determination of residue interaction pairs. We found that PIADA produced more satisfactory results than comparable algorithms implemented in PSAIA. Particular advantages of PSAIA include its capacity to combine different methods to detect the locations and types of interactions between residues and its ability, without any further automation steps, to handle large numbers of protein structures and complexes. Generally, the integration of a variety of methods enables PSAIA to offer easier automation of analysis and greater reliability of results. PSAIA can be used either via a graphical user interface or from the command-line. Results are generated in either tabular or XML format. Conclusion In a straightforward fashion and for large sets of protein structures, PSAIA enables the calculation of protein geometric parameters and the determination of location and type for protein-protein interaction sites. XML formatted output enables easy conversion of results to various formats suitable for statistic analysis. Results from smaller data sets demonstrated the influence of geometry on protein interaction sites. Comprehensive analysis of properties of large data sets lead to new information useful in the prediction of protein-protein interaction sites.
Fundamental trends in fluid-structure interaction
Galdi, Giovanni P
2010-01-01
The interaction of a fluid with a solid body is a widespread phenomenon in nature, occurring at different scales and different applied disciplines. Interestingly enough, even though the mathematical theory of the motion of bodies in a liquid is one of the oldest and most classical problems in fluid mechanics, mathematicians have, only very recently, become interested in a systematic study of the basic problems related to fluid-structure interaction, from both analytical and numerical viewpoints. ""Fundamental Trends in Fluid-Structure Interaction"" is a unique collection of important papers wr
Cation-π interactions in structural biology
Gallivan, Justin P.; Dougherty, Dennis A.
1999-01-01
Cation-pi interactions in protein structures are identified and evaluated by using an energy-based criterion for selecting significant sidechain pairs. Cation-pi interactions are found to be common among structures in the Protein Data Bank, and it is clearly demonstrated that, when a cationic sidechain (Lys or Arg) is near an aromatic sidechain (Phe, Tyr, or Trp), the geometry is biased toward one that would experience a favorable cation-pi interaction. The sidechain of Arg is more likely tha...
International Nuclear Information System (INIS)
Druce, C.H.; Moszkowski, S.A.
1986-01-01
The surface delta interaction is used as an effective nucleon-nucleon interaction to investigate the structure and interaction of the bosons in the interacting boson model. We have obtained analytical expressions for the coefficients of a multipole expansion of the neutron-boson-proton-boson interaction for the case of degenerate orbits. A connection is made between these coefficients and the parameters of the interaction boson model Hamiltonian. A link between the latter parameters and the single boson energies is suggested
Energy Technology Data Exchange (ETDEWEB)
Druce, C.H.; Moszkowski, S.A.
1986-01-01
The surface delta interaction is used as an effective nucleon-nucleon interaction to investigate the structure and interaction of the bosons in the interacting boson model. We have obtained analytical expressions for the coefficients of a multipole expansion of the neutron-boson-proton-boson interaction for the case of degenerate orbits. A connection is made between these coefficients and the parameters of the interaction boson model Hamiltonian. A link between the latter parameters and the single boson energies is suggested.
Guo, Xiaoguang; Kashihara, Toshihide; Nakada, Tsutomu; Aoyama, Toshifumi; Yamada, Mitsuhiko
2018-06-01
In atherosclerosis, vascular smooth muscle cells (VSMC) migrate from the media toward the intima of the arteries in response to cytokines, such as platelet-derived growth factor (PDGF). However, molecular mechanism underlying the PDGF-induced migration of VSMCs remains unclear. The migration of rat aorta-derived synthetic VSMCs, A7r5, in response to PDGF was potently inhibited by a Ca V 1.2 channel inhibitor, nifedipine, and a Src family tyrosine kinase (SFK)/Abl inhibitor, bosutinib, in a less-than-additive manner. PDGF significantly increased Ca V 1.2 channel currents without altering Ca V 1.2 protein expression levels in A7r5 cells. This reaction was inhibited by C-terminal Src kinase, a selective inhibitor of SFKs. In contractile VSMCs, the C-terminus of Ca V 1.2 is proteolytically cleaved into proximal and distal C-termini (PCT and DCT, respectively). Clipped DCT is noncovalently reassociated with PCT to autoinhibit the channel activity. Conversely, in synthetic A7r5 cells, full-length Ca V 1.2 (Ca V 1.2FL) is expressed much more abundantly than truncated Ca V 1.2. In a heterologous expression system, c-Src activated Ca V 1.2 channels composed of Ca V 1.2FL but not truncated Ca V 1.2 (Ca V 1.2Δ1763) or Ca V 1.2Δ1763 plus clipped DCT. Further, c-Src enhanced the coupling efficiency between the voltage-sensing domain and activation gate of Ca V 1.2FL channels by phosphorylating Tyr1709 and Tyr1758 in PCT. Compared with Ca V 1.2Δ1763, c-Src could more efficiently bind to and phosphorylate Ca V 1.2FL irrespective of the presence or absence of clipped DCT. Therefore, in atherosclerotic lesions, phenotypic switching of VSMCs may facilitate pro-migratory effects of PDGF on VSMCs by suppressing posttranslational Ca V 1.2 modifications.
Analysis of Pumphouse RCC Frame Structure for Soil Structure Interaction
Mr A.S. Thombare; Prof. V.P. Kumbhar; Prof. A.H. Kumbhar
2016-01-01
When structure is built on ground some elements of structure are direct contact with soil. When loads are applied on structure internal forces are developed in both the structure as well as in soil. It results in deformation of both the components which are independent to each other. This are called soil structure interaction. The analysis is done by using (Bentley STAAD.Pro V8i Version 2007) software. The analysis carried out been pump house structure R.C.C. frame structure find ...
Mode Interaction in Structures - An Overview
DEFF Research Database (Denmark)
Byskov, Esben
2004-01-01
Abstract Koiter [1] was the first to formulate an asymptotic expansion to investigate postbuckling behavior and imperfection sensitivity of elastic structures. Since then, a large number of analyses of particular structures have appeared as well as some new expansions aimed at specific problems, ...... analyses must always be preferred because asymptotic expansions are obsolete. Keywords: stability, elastic, mode interaction....
Hybrid modelling of soil-structure interaction for embedded structures
International Nuclear Information System (INIS)
Gupta, S.; Penzien, J.
1981-01-01
The basic methods currently being used for the analysis of soil-structure interaction fail to properly model three-dimensional embedded structures with flexible foundations. A hybrid model for the analysis of soil-structure interaction is developed in this investigation which takes advantage of the desirable features of both the finite element and substructure methods and which minimizes their undesirable features. The hybrid model is obtained by partitioning the total soil-structure system into a nearfield and a far-field with a smooth hemispherical interface. The near-field consists of the structure and a finite region of soil immediately surrounding its base. The entire near-field may be modelled in three-dimensional form using the finite element method; thus, taking advantage of its ability to model irregular geometries, and the non-linear soil behavior in the immediate vicinity of the structure. (orig./WL)
Algebraic structure of open string interactions
International Nuclear Information System (INIS)
Ramond, P.; Rodgers, V.G.J.
1986-05-01
Starting from the gauge invariant equations of motion for the free open string we show how to generate interactions by analogy with Yang-Mills. We postulate Non-Abelian transformation laws acting on the fields of the gauge invariant free open string theory. By demanding algebraic closure we then derive a set of consistency requirements and show that they lead to the construction of the minimal interacting equations which contain no cubic terms away from the physical gauge. We present explicit solutions to lowest interacting order for both vertices and structure functions. 14 refs
Algebraic structure of open-string interactions
International Nuclear Information System (INIS)
Ramond, P.; Rodgers, V.G.J.
1986-01-01
Starting from the gauge-invariant equations of motion for the free open string we show how to generate interactions by analogy with the Yang-Mills system. We postulate non-Abelian transformation laws acting on the fields of the gauge-invariant free open-string theory. By demanding algebraic closure we then derive a set of consistency requirements and show that they lead to the construction of the minimal interacting equations which contain no cubic terms away from the physical gauge. We present explicit solutions to lowest interacting order for both vertices and structure functions
Hadronic interaction and structure of exotic nuclei
International Nuclear Information System (INIS)
Otsuka, Takaharu
2009-01-01
I will overview recent studies on the evolution of the shell structure in stable and exotic nuclei, and will show its relevance to hadronic interaction, including nuclear forces. This shell evolution is primarily due to the tensor force. The robust mechanism and some examples will be presented. Such examples include the disappearance of existing magic numbers and the appearance of new ones. The shell structure and existing limit of nuclei depend also on the three-body interaction in a specific way. I will sketch how the Δ-hole excitation induced three-body force (Fujita-Miyazawa force) modifies them. (author)
Non-linear soil-structure interaction
International Nuclear Information System (INIS)
Wolf, J.P.
1984-01-01
The basic equation of motion to analyse the interaction of a non-linear structure and an irregular soil with the linear unbounded soil is formulated in the time domain. The contribution of the unbounded soil involves convolution integrals of the dynamic-stiffness coefficients in the time domain and the corresponding motions. As another possibility, a flexibility formulation fot the contribution of the unbounded soil using the dynamic-flexibility coefficients in the time domain, together with the direct-stiffness method for the structure and the irregular soil can be applied. As an example of a non-linear soil-structure-interaction analysis, the partial uplift of the basemat of a structure is examined. (Author) [pt
Interaction of multiwalled carbon nanotube produces structural ...
African Journals Online (AJOL)
Abstract. Multiwalled carbon nanotube (MWCNT) has been found to produce structural changes in Calf Thymus-DNA (CT-DNA). The interaction or binding of the multi-walled carbon nanotubes (MWCNT) was investigated in order to discover if it brings about any significant changes of the DNA double helix using CD spectra ...
Strategy elimination in games with interaction structures
Witzel, A.; Apt, K.R.; Zvesper, J.A.
2009-01-01
We study games in the presence of an interaction structure, which allows players to communicate their preferences, assuming that each player initially only knows his own preferences. We study the outcomes of iterated elimination of strictly dominated strategies (IESDS) that can be obtained in any
Modeling of soil-water-structure interaction
DEFF Research Database (Denmark)
Tang, Tian
as the developed nonlinear soil displacements and stresses under monotonic and cyclic loading. With the FVM nonlinear coupled soil models as a basis, multiphysics modeling of wave-seabed-structure interaction is carried out. The computations are done in an open source code environment, OpenFOAM, where FVM models...
On some structure-turbulence interaction problems
Maekawa, S.; Lin, Y. K.
1976-01-01
The interactions between a turbulent flow structure; responding to its excitation were studied. The turbulence was typical of those associated with a boundary layer, having a cross-spectral density indicative of convection and statistical decay. A number of structural models were considered. Among the one-dimensional models were an unsupported infinite beam and a periodically supported infinite beam. The fuselage construction of an aircraft was then considered. For the two-dimensional case a simple membrane was used to illustrate the type of formulation applicable to most two-dimensional structures. Both the one-dimensional and two-dimensional structures studied were backed by a cavity filled with an initially quiescent fluid to simulate the acoustic environment when the structure forms one side of a cabin of a sea vessel or aircraft.
Fluid-structure interaction investigations for pipelines
International Nuclear Information System (INIS)
Altstadt, E.; Carl, H.; Weiss, R.
2003-12-01
In existing Nuclear Power Plants water hammers can occur in case of an inflow of sub-cooled water into pipes or other parts of the equipment, which are filled with steam or steam-water mixture. They also may appear as the consequence of fast valve closing or opening actions or of breaks in pipelines, with single phase or two-phase flow. In the latter case, shock waves in two-phase flow must be expected. In all cases, strong dynamic stresses are induced in the wall of the equipment. Further, the change of the momentum of the liquid motion and the deformation of the component due to the dynamic stresses generate high loads on the support structures of the component, in which the water hammer respectively the shock wave occurs. The influence of the fluid-structure interaction on the magnitude of the loads on pipe walls and support structures is not yet completely understood. In case of a dynamic load caused by a pressure wave, the stresses in pipe walls, especially in bends, are different from the static case. The propagating pressure wave may cause additional non-symmetric deformations which increase the equivalent stresses in comparison to the symmetric load created by a static inner pressure. On the other hand, fluid-structure interaction causes the structure to deform, which leads to a decrease of the resulting stresses. The lack of experimental data obtained at well defined geometric boundary conditions is a significant obstacle for the validation of codes which consider fluid-structure interaction. Furthermore, up to now the feedback from structural deformations to the fluid mechanics has not been fully implemented in existing calculation software codes. Therefore, at FZR a cold water hammer test facility (CWHTF) was designed and built up. (orig.)
Soil-structure interaction - an engineering evaluation
International Nuclear Information System (INIS)
Hadjian, A.H.
1976-01-01
The two methods of analysis for structure interaction, the impedance and the finite element methods, are reviewed with regard to their present capabilities to address the significant factors of the problem. The objective of the paper is to evaluate if an adequate engineering solution to the problem is provided by either approach. Questions related to the reduction of seismic motions with depth scattering of incident waves, the three-dimensionality of the real problem, soil damping, strain dependency of soil properties and the uncertainties associated with all of the above are discussed in sufficient detail. All conclusions made are based on referenced material. It appears that both methods as presently practised have not yet completely solved the problem, the impedance approach has come closer to addressing the more significant issues. Because of this finding, in addition to its simplicity and low cost, the impedance approach is the perfect engineering method for soil-structure interaction. (Auth.)
Fluid structure interaction in tube bundles
International Nuclear Information System (INIS)
Brochard, D.; Jedrzejewski, F.; Gibert, R.J.
1995-01-01
A lot of industrial components contain tube bundles immersed in a fluid. The mechanical analysis of such systems requires the study of the fluid structure interaction in the tube bundle. Simplified methods, based on homogenization methods, have been developed to analyse such phenomenon and have been validated through experimental results. Generally, these methods consider only the fluid motion in a plan normal to the bundle axis. This paper will analyse, in a first part, the fluid structure interaction in a tube bundle through a 2D finite element model representing the bundle cross section. The influence of various parameters like the bundle size, and the bundle confinement will be studied. These results will be then compared with results from homogenization methods. Finally, the influence of the 3D fluid motion will be investigated, in using simplified methods. (authors). 11 refs., 12 figs., 2 tabs
Many Body Structure of Strongly Interacting Systems
Arenhövel, Hartmuth; Drechsel, Dieter; Friedrich, Jörg; Kaiser, Karl-Heinz; Walcher, Thomas; Symposium on 20 Years of Physics at the Mainz Microtron MAMI
2006-01-01
This carefully edited proceedings volume provides an extensive review and analysis of the work carried out over the past 20 years at the Mainz Microtron (MAMI). This research centered around the application of Quantum Chromodynamics in the strictly nonperturbative regime at hadronic scales of about 1 fm. Due to the many degrees of freedom in hadrons at this scale the leitmotiv of this research is "Many body structure of strongly interacting systems". Further, an outlook on the research with the forthcoming upgrade of MAMI is given. This volume is an authoritative source of reference for everyone interested in the field of the electro-weak probing of the structure of hadrons.
Proton-neutron interaction and nuclear structure
International Nuclear Information System (INIS)
Casten, R.F.
1986-01-01
The pervasive role of the proton-neutron interaction in nuclear structure is discussed. Particular emphasis is given to its influence on the onset of collectivity and deformation, on intruder states, and on the evolution of subshell structure. The N/sub p/N/sub n/ scheme is outlined and some applications of it to collective model calculations and to nuclei far off stability are described. The concept of N/sub p/N/sub n/ multiplets is introduced. 32 refs., 20 figs
Dissipative Structures At Laser-Solid Interactions
Nanai, Laszlo
1989-05-01
The questions which are discussed in this lecture refer to one of sections of laser-solid interactions, namely: to formation of different dissipative structures on the surface of metals and semiconductors when they are irradiated by intensive laser light in chemically active media (f.e.air). Some particular examples of the development at different spatial and time instabilities, periodic and stochastic structures, auto-wave processes are present-ed using testing materials vanadium metal and semiconducting V205 single crystals and light sources: cw and pulsed CO2 and YAG lasers.
SOIL STRUCTURE INTERACTION EFFECTS ON MULTISTOREY R/C STRUCTURES
Directory of Open Access Journals (Sweden)
Muberra ESER AYDEMIR
2013-01-01
Full Text Available This paper addresses the behavior of multistorey structures considering soil structure interaction under earthquake excitation. For this purpose, sample 3, 6, 9 storey RC frames are designed based on Turkish Seismic Design Code and analyzed in time domain with incremental dynamic analysis. Strength reduction factors are investigated for generated sample plane frames for 64 different earthquake motions recorded on different site conditions such as rock, stiff soil, soft soil and very soft soil. According to the analysis result, strength reduction factors of sample buildings considering soil structure interaction are found to be almost always smaller than design strength reduction factors given in current seismic design codes, which cause an unsafe design and nonconservative design forces.
Soil/Structure Interactions in Earthquakes
Ramey, G. W.; Moore, R. K.; Yoo, C. H.; Bush, Thomas D., Jr.; Stallings, J. M.
1986-01-01
In effort to improve design of Earthquake-resistant structures, mathematical study undertaken to simulate interactions among soil, foundation, and superstructure during various kinds of vibrational excitation. System modeled as three lumped masses connected vertically by springs, with lowest mass connected to horizontal vibrator (representing ground) through springs and dashpot. Behavior of springs described by elastic or elastoplastic force/deformation relationships. Relationships used to approximate nonlinear system behavior and soil/foundation-interface behavior.
PFEM application in fluid structure interaction problems
Celigueta Jordana, Miguel Ángel; Larese De Tetto, Antonia; Latorre, Salvador
2008-01-01
In the current paper the Particle Finite Element Method (PFEM), an innovative numerical method for solving a wide spectrum of problems involving the interaction of fluid and structures, is briefly presented. Many examples of the use of the PFEM with GiD support are shown. GiD framework provides a useful pre and post processor for the specific features of the method. Its advantages and shortcomings are pointed out in the present work. Peer Reviewed
Weakly interacting massive particles and stellar structure
International Nuclear Information System (INIS)
Bouquet, A.
1988-01-01
The existence of weakly interacting massive particles (WIMPs) may solve both the dark matter problem and the solar neutrino problem. Such particles affect the energy transport in the stellar cores and change the stellar structure. We present the results of an analytic approximation to compute these effects in a self-consistent way. These results can be applied to many different stars, but we focus on the decrease of the 8 B neutrino flux in the case of the Sun
Structure of the human chromosome interaction network.
Directory of Open Access Journals (Sweden)
Sergio Sarnataro
Full Text Available New Hi-C technologies have revealed that chromosomes have a complex network of spatial contacts in the cell nucleus of higher organisms, whose organisation is only partially understood. Here, we investigate the structure of such a network in human GM12878 cells, to derive a large scale picture of nuclear architecture. We find that the intensity of intra-chromosomal interactions is power-law distributed. Inter-chromosomal interactions are two orders of magnitude weaker and exponentially distributed, yet they are not randomly arranged along the genomic sequence. Intra-chromosomal contacts broadly occur between epigenomically homologous regions, whereas inter-chromosomal contacts are especially associated with regions rich in highly expressed genes. Overall, genomic contacts in the nucleus appear to be structured as a network of networks where a set of strongly individual chromosomal units, as envisaged in the 'chromosomal territory' scenario derived from microscopy, interact with each other via on average weaker, yet far from random and functionally important interactions.
PCNA Structure and Interactions with Partner Proteins
Oke, Muse; Zaher, Manal S.; Hamdan, Samir
2018-01-01
Proliferating cell nuclear antigen (PCNA) consists of three identical monomers that topologically encircle double-stranded DNA. PCNA stimulates the processivity of DNA polymerase δ and, to a less extent, the intrinsically highly processive DNA polymerase ε. It also functions as a platform that recruits and coordinates the activities of a large number of DNA processing proteins. Emerging structural and biochemical studies suggest that the nature of PCNA-partner proteins interactions is complex. A hydrophobic groove at the front side of PCNA serves as a primary docking site for the consensus PIP box motifs present in many PCNA-binding partners. Sequences that immediately flank the PIP box motif or regions that are distant from it could also interact with the hydrophobic groove and other regions of PCNA. Posttranslational modifications on the backside of PCNA could add another dimension to its interaction with partner proteins. An encounter of PCNA with different DNA structures might also be involved in coordinating its interactions. Finally, the ability of PCNA to bind up to three proteins while topologically linked to DNA suggests that it would be a versatile toolbox in many different DNA processing reactions.
PCNA Structure and Interactions with Partner Proteins
Oke, Muse
2018-01-29
Proliferating cell nuclear antigen (PCNA) consists of three identical monomers that topologically encircle double-stranded DNA. PCNA stimulates the processivity of DNA polymerase δ and, to a less extent, the intrinsically highly processive DNA polymerase ε. It also functions as a platform that recruits and coordinates the activities of a large number of DNA processing proteins. Emerging structural and biochemical studies suggest that the nature of PCNA-partner proteins interactions is complex. A hydrophobic groove at the front side of PCNA serves as a primary docking site for the consensus PIP box motifs present in many PCNA-binding partners. Sequences that immediately flank the PIP box motif or regions that are distant from it could also interact with the hydrophobic groove and other regions of PCNA. Posttranslational modifications on the backside of PCNA could add another dimension to its interaction with partner proteins. An encounter of PCNA with different DNA structures might also be involved in coordinating its interactions. Finally, the ability of PCNA to bind up to three proteins while topologically linked to DNA suggests that it would be a versatile toolbox in many different DNA processing reactions.
Advances in soil-structure interaction studies
International Nuclear Information System (INIS)
Maheshwari, B.K.
2011-01-01
It is utmost important that lifeline infrastructures (such as bridges, hospitals, power plants, dams etc.) are safe and functional during earthquakes as damage or collapse of these structures may have far reaching implications. A lifeline's failure may hamper relief and rescue operations required just after an earthquake and secondly its indirect economical losses may be very severe. Therefore, safety of these structures during earthquakes is vital. Further, damage to nuclear facilities during earthquake may lead to disaster. These structures should be designed adequately taking into account all the important issues. Soil-Structure Interaction (SSI) is one of the design issues, which is often overlooked and even in some cases ignored. The effects of dynamic SSI are well understood and practiced in the nuclear power industry (for large foundations of the nuclear containment structures) since sixties. However, in last decade, there are many advances in techniques of SSI and those need to be incorporated in practice. Failures of many structures occurred during the 1989 Loma Prieta and 1994 Northridge, California earthquakes and the 1995 Kobe, Japan earthquake due to SSI or a related issue. Many jetties had failed in Andaman and Nicobar islands due to Sumatra earthquake and ensuing tsunamis. It is because of this recent experience that the importance of SSI on dynamic response of structures during earthquakes has been fully realized. General belief that the SSI effects are always beneficial for the structure is not correct. Some cases have been presented where it is shown that SSI effects are detrimental for the stability of the structure. This paper addresses the effects of dynamic SSI on the response of the structures and explains its importance. Further advances in SSI studies have been discussed
SSI [soil-structure interactions] and structural benchmarks
International Nuclear Information System (INIS)
Philippacopoulos, A.J.; Miller, C.A.; Costantino, C.J.; Graves, H.
1986-01-01
This paper presents the latest results of the ongoing program entitled, ''Standard Problems for Structural Computer Codes'', currently being worked on at BNL for the USNRC, Office of Nuclear Regulatory Research. During FY 1986, efforts were focussed on three tasks, namely, (1) an investigation of ground water effects on the response of Category I structures, (2) the Soil-Structure Interaction Workshop and (3) studies on structural benchmarks associated with Category I structures. The objective of the studies on ground water effects is to verify the applicability and the limitations of the SSI methods currently used by the industry in performing seismic evaluations of nuclear plants which are located at sites with high water tables. In a previous study by BNL (NUREG/CR-4588), it has been concluded that the pore water can influence significantly the soil-structure interaction process. This result, however, is based on the assumption of fully saturated soil profiles. Consequently, the work was further extended to include cases associated with variable water table depths. In this paper, results related to ''cut-off'' depths beyond which the pore water effects can be ignored in seismic calculations, are addressed. Comprehensive numerical data are given for soil configurations typical to those encountered in nuclear plant sites. These data were generated by using a modified version of the SLAM code which is capable of handling problems related to the dynamic response of saturated soils
Principles of fluid-structure interaction
International Nuclear Information System (INIS)
Schumann, U.; Kernforschungszentrum Karlsruhe G.m.b.H.
1981-01-01
Fluid-structure interaction (FSI) is an important physical phenomenon which has attracted significant attention in nuclear reactor safety analysis. Here, simple explanations of the principle effects of FSI are given and illustrated by reference to numerical and experimental results. First, a very simple fluid-structure model is introduced which consists of a spring supported piston closing a fluid filled rigid pipe. The motion of the piston and the fluid is approximately described by one degree of freedom, respectively. Depending on the load frequency and material parameters one finds that the coupled system is characterized by virtual masses and stiffnesses or by the inverse properties which are termed virtual fluidities and compressibilities. Thus the two parts interact as if they are connected in series or in parallel. The two eigenfrequencies of the coupled system enclose the eigenfrequencies of the individual fluid and structure parts. Second, the great importance of Hamilton's principle for derivation of the coupled equations of motion is emphasized. From this principle upper and lower bounds for the effective density of a heterogeneous fluid-solid mixture are deduced. Continuum models for such mixtures contain a virtual density tensor. Finally, we discuss FSI for the case of a loss-of-coolant accident (LOCA) in a pressurized water reactor (PWR) in the first (subcooled) blowdown period. Here, the fluid imposes pressure loadings on internal structures like the core barrel and the motion of these structures influences the fluid motion. Recent experimental results obtained at the HDR are compared with numerical predictions of the FLUX 2-code. The fair agreement confirms that we have well understood the principal effects of FSI. (orig.) [de
Fluid structure interaction in piping systems
Energy Technology Data Exchange (ETDEWEB)
Svingen, Bjoernar
1996-12-31
The Dr. ing. thesis relates to an analysis of fluid structure interaction in piping systems in the frequency domain. The governing equations are the water hammer equations for the liquid, and the beam-equations for the structure. The fluid and structural equations are coupled through axial stresses and fluid continuity relations controlled by the contraction factor (Poisson coupling), and continuity and force relations at the boundaries (junction coupling). A computer program has been developed using the finite element method as a discretization technique both for the fluid and for the structure. This is made for permitting analyses of large systems including branches and loops, as well as including hydraulic piping components, and experiments are executed. Excitations are made in a frequency range from zero Hz and up to at least one thousand Hz. Frequency dependent friction is modelled as stiffness proportional Rayleigh damping both for the fluid and for the structure. With respect to the water hammer equations, stiffness proportional damping is seen as an artificial (bulk) viscosity term. A physical interpretation of this term in relation to transient/oscillating hydraulic pipe-friction is given. 77 refs., 72 figs., 4 tabs.
Enzyme structure and interaction with inhibitors
International Nuclear Information System (INIS)
London, R.E.
1983-01-01
This article reviews some of the results of studies on the 13 C-labeled enzyme dihydrofolate reductase (DHFR). Nuclear magnetic resonance (NMR) techniques are used in combination with isotopic labeling to learn about the structure and dynamics of this enzyme. 13 C-labeling is used for the purpose of studying enzyme/substrate and enzyme/inhibitor interactions. A second set of studies with DHFR was designed to investigate the basis for the high affinity between the inhibitor methotrexate and DHFR. The label was placed on the inhibitor, rather than the enzyme
Earthquake response analysis considering structure-soil-structure interaction
International Nuclear Information System (INIS)
Shiomi, T.; Takahashi, K.; Oguro, E.
1981-01-01
This paper proposes a numerical method of earthquake response analysis considering the structure-soil-structure interaction between two adjacent buildings. In this paper an analytical study is presented in order to show some typical features of coupling effects of two reactor buildings of the BWR-type nuclear power plant. The technical approach is a kind of substructure method, which at first evaluates the compliance properties with the foundation-soil-foundation interaction and then uses the compliance in determining seismic responses of two super-structures during earthquake motions. For this purpose, it is assumed that the soil medium is an elastic half space for modeling and that the rigidity of any type of structures such as piping facilities connecting the adjacent buildings is negligible. The technical approach is mainly based on the following procedures. Supersturcture stiffness is calculated by using the method which has been developed in our laboratory based on the Thin-Wall Beam Theory. Soil stiffness is expressed by a matrix with 12 x 12 elements as a function of frequency, which is calculated using the soil compliance functions proposed in Dr. Tajimi's Theory. These stiffness values may be expressed by complex numbers for modeling the damping mechanism of superstructures. We can solve eigenvalue problems with frequency dependent stiffness and the large-scale matrix using our method which is based on condensing the matrix to the suitable size by Rayleigh-Ritz method. Earthquake responses can be solved in the frequency domain by Fourier Transform. (orig./RW)
Structural insights into microtubule doublet interactions inaxonemes
Energy Technology Data Exchange (ETDEWEB)
Downing, Kenneth H.; Sui, Haixin
2007-06-06
Coordinated sliding of microtubule doublets, driven by dynein motors, produces periodic beating of the axoneme. Recent structural studies of the axoneme have used cryo-electron tomography to reveal new details of the interactions among some of the multitude of proteins that form the axoneme and regulate its movement. Connections among the several sets of dyneins, in particular, suggest ways in which their actions may be coordinated. Study of the molecular architecture of isolated doublets has provided a structural basis for understanding the doublet's mechanical properties that are related to the bending of the axoneme, and has also offered insight into its potential role in the mechanism of dynein activity regulation.
Nuclear structure and neutrino-nucleus interaction
International Nuclear Information System (INIS)
Krmpotic, Francisco
2011-01-01
Recent years have witnessed an intense experimental and theoretical activity oriented towards a better comprehension of neutrino nucleus interaction. While the main motivation for this task is the demand coming from oscillation experiments in their search for a precise determination of neutrino properties, the relevance of neutrino interaction with matter is more wide-ranging. It is imperative for astrophysics, hadronic and nuclear physics, and physics beyond the standard model. The experimental information on neutrino induced reactions is rapidly growing, and the corresponding theoretical description is a challenging proposition, since the energy scales of interest span a vast region, going from few MeV for solar neutrinos, to tens of MeV for the interpretation of experiments with the muon and pion decay at rest and the detection of neutrinos coming from the core collapse of supernova, and to hundreds of MeV or few GeV for the detection of atmospheric neutrinos, and for the neutrino oscillation program of the MiniBooNE experiment. The presence of neutrinos, being chargeless particles, can only be inferred by detecting the secondary particles created in colliding and interacting with the matter. Nuclei are often used as neutrino detectors, and in particular 12 C which is a component of many scintillator detectors. Thus, the interpretation of neutrino data heavily relies on detailed and quantitative knowledge of the features of the neutrino-nucleus interaction. The nuclear structure methods used in the evaluation of the neutrino-nucleus cross section are reviewed. Detailed comparison between the experimental and theoretical results establishes benchmarks needed for verification and/or parameter adjustment of the nuclear models. Having a reliable tool for such calculation is of great importance in a variety of applications, such as the description of the r-process nucleosynthesis. (author)
Interaction and the structures of coal
Opaprakasit, Pakorn
The origin of a decrease in the amount of soluble material from coal upon a reflux treatment has been investigated in an attempt to obtain insight into the nature of the interaction in the macromolecular network structure of coal. This decrease in the extractable material is a result of an increase in the amount of physical cross-links associated with secondary interactions. The alternate possibility of covalent cross-link formation by ether linkage was found to be unlikely because the coal hydroxyl content remains unchanged upon heat treatment. The functional groups responsible for forming these physical cross-links and their contents vary from coal to coal with coal rank. Carboxylate/cation complexes, similar to those found in ionomers, dominate in low rank coal. In high rank coal, the clusters involving pi-cation interactions were observed. Both mechanisms seem to play a role in mid rank coals. These physical cross-links are responsible for a lowering of the extraction yield of coal, but are disrupted by a treatment with acid solution, resulting in an increase in the extraction yield. As a consequence, the cross-links in coal structure should be classified into two types; a "permanent" covalent cross-link, which break under extreme conditions such as chemical reaction and pyrolysis, and "reversible" cross-links, largely associated with ionomer-like structure and pi-cation interactions. The interaction between a "magic" solvent of N-methylpyrollidone and carbon disulfide (NMP/CS2) and its role in the unusual extractability enhancement of Upper Freeport coal has also been investigated. The results strongly suggest that NMP/CS2 mixed solvents form complexes with cations. These mixed solvents are capable of forming a solid complex with cations from NaOH and some simple salts, such as NaCl and LiCl. Given that Upper Freeport coal contains a large amount of mineral matter, it is not surprising that these types of complexes could be formed in the present of the mixed
Fluid-structure interaction and biomedical applications
Galdi, Giovanni; Nečasová, Šárka
2014-01-01
This book presents, in a methodical way, updated and comprehensive descriptions and analyses of some of the most relevant problems in the context of fluid-structure interaction (FSI). Generally speaking, FSI is among the most popular and intriguing problems in applied sciences and includes industrial as well as biological applications. Various fundamental aspects of FSI are addressed from different perspectives, with a focus on biomedical applications. More specifically, the book presents a mathematical analysis of basic questions like the well-posedness of the relevant initial and boundary value problems, as well as the modeling and the numerical simulation of a number of fundamental phenomena related to human biology. These latter research topics include blood flow in arteries and veins, blood coagulation and speech modeling. We believe that the variety of the topics discussed, along with the different approaches used to address and solve the corresponding problems, will help readers to develop a more holis...
Difference analysis for fluid-structure interaction
International Nuclear Information System (INIS)
Giencke, E.; Forkel, M.
1979-01-01
For solving fluid structure interaction problems it is possible to organize the compter programs for the difference method in the same way as for the finite element method by establishing the difference equations with the principial of virtual work. In the finite element method the individual localized functions for the approximation of the potential function PHI will be chosen also as virtual functions delta PHI. Deriving difference equations the virtual states are simple as possible and the approximation of the potential function may be linear or parabolic. The equations become symmetric both for points in the interiour and the boundaries and for grids with rectangular and triangular elements. The boundary and edge-conditions shall established for elastic walls and for the free surface. For regular rectangular and triangular grids it is possible to derive on the same way multipoint difference equations, which for the same numbers of unknowns are two orders better in accuracy as the usual difference or the finite element equations. Some examples for the pressure distribution in a BWR-steel-containment due to steam bubble collaps at the condenser pipes will be shown. (orig.)
Implications of interaction between Humans and Structures
DEFF Research Database (Denmark)
Pedersen, Lars
2015-01-01
Many civil engineering structures are occupied by humans, and often humans are considered as a static load in calculations. However, active humans on structures can cause structural vibrations. Passive humans might also be present on that structure and they do change the structural system (such a...
Study on Human-structure Dynamic Interaction in Civil Engineering
Gao, Feng; Cao, Li Lin; Li, Xing Hua
2018-06-01
The research of human-structure dynamic interaction are reviewed. Firstly, the influence of the crowd load on structural dynamic characteristics is introduced and the advantages and disadvantages of different crowd load models are analyzed. Then, discussing the influence of structural vibration on the human-induced load, especially the influence of different stiffness structures on the crowd load. Finally, questions about human-structure interaction that require further study are presented.
Some Implications of Human-Structure Interaction
DEFF Research Database (Denmark)
Pedersen, Lars
2013-01-01
On structures, humans may be active which may cause structural vibrations as human activity can excite structural vibration modes. However, humans may also be passive (sitting or standing on the structure). The paper addresses this subject and explores the implications of having passive humans...
Structure of local interactions in complex financial dynamics.
Jiang, X F; Chen, T T; Zheng, B
2014-06-17
With the network methods and random matrix theory, we investigate the interaction structure of communities in financial markets. In particular, based on the random matrix decomposition, we clarify that the local interactions between the business sectors (subsectors) are mainly contained in the sector mode. In the sector mode, the average correlation inside the sectors is positive, while that between the sectors is negative. Further, we explore the time evolution of the interaction structure of the business sectors, and observe that the local interaction structure changes dramatically during a financial bubble or crisis.
Structural study of surfactant-dependent interaction with protein
Energy Technology Data Exchange (ETDEWEB)
Mehan, Sumit; Aswal, Vinod K., E-mail: vkaswal@barc.gov.in [Solid State Physics Division, Bhabha Atomic Research Centre, Mumbai 400 085 (India); Kohlbrecher, Joachim [Laboratory for Neutron Scattering, Paul Scherrer Institut, CH-5232 PSI Villigen (Switzerland)
2015-06-24
Small-angle neutron scattering (SANS) has been used to study the complex structure of anionic BSA protein with three different (cationic DTAB, anionic SDS and non-ionic C12E10) surfactants. These systems form very different surfactant-dependent complexes. We show that the structure of protein-surfactant complex is initiated by the site-specific electrostatic interaction between the components, followed by the hydrophobic interaction at high surfactant concentrations. It is also found that hydrophobic interaction is preferred over the electrostatic interaction in deciding the resultant structure of protein-surfactant complexes.
Electronic structures in ion-surface interactions
International Nuclear Information System (INIS)
Kiuchi, Masato; Takeuchi, Takae; Yamamoto, Masao.
1997-01-01
A chemical bond generated by the interaction between low energy ion and base was investigated by ab initio molecular orbital method. The effects of ion charge were studied by calculation of this method. When carbon ion approached to graphite base (C 24 H 12 ), the positive ion and the neutral atom covalently bonded, but the negative ion did not combine with it. When carbon ion was injected into h-BN base (B 12 N 12 H 12 , hexagonal system boron nitride), the positive ion and the neutron atom formed covalent bond and the van der Waals binding, and the negative ion interacted statically with it. (S.Y.)
Wave Interaction with Porous Coastal Structures
DEFF Research Database (Denmark)
Jensen, Bjarne
with the simulation of a rock toe structure on a rubble mound breakwater. The stones in the toe structure were resolved directly in the model while the rest of the breakwater was included with the porosity model. In Chapter 6 both experimental and numerical topics are included. The physical experiments includes...
Understanding Protein-Protein Interactions Using Local Structural Features
DEFF Research Database (Denmark)
Planas-Iglesias, Joan; Bonet, Jaume; García-García, Javier
2013-01-01
Protein-protein interactions (PPIs) play a relevant role among the different functions of a cell. Identifying the PPI network of a given organism (interactome) is useful to shed light on the key molecular mechanisms within a biological system. In this work, we show the role of structural features...... interacting and non-interacting protein pairs to classify the structural features that sustain the binding (or non-binding) behavior. Our study indicates that not only the interacting region but also the rest of the protein surface are important for the interaction fate. The interpretation...... to score the likelihood of the interaction between two proteins and to develop a method for the prediction of PPIs. We have tested our method on several sets with unbalanced ratios of interactions and non-interactions to simulate real conditions, obtaining accuracies higher than 25% in the most unfavorable...
International Nuclear Information System (INIS)
Joshi, J.R.
2000-01-01
The Process, Purification and Stack Buildings are collocated safety related concrete shear wall structures with plan dimensions in excess of 100 feet. An important aspect of their seismic analysis was the determination of structure soil structure interaction (SSSI) effects, if any. The SSSI analysis of the Process Building, with one other building at a time, was performed with the SASSI computer code for up to 50 frequencies. Each combined model had about 1500 interaction nodes. Results of the SSSI analysis were compared with those from soil structure interaction (SSI) analysis of the individual buildings, done with ABAQUS and SASSI codes, for three parameters: peak accelerations, seismic forces and the in-structure floor response spectra (FRS). The results may be of wider interest due to the model size and the potential applicability to other deep soil layered sites. Results obtained from the ABAQUS analysis were consistently higher, as expected, than those from the SSI and SSSI analyses using the SASSI. The SSSI effect between the Process and Purification Buildings was not significant. The Process and Stack Building results demonstrated that under certain conditions a massive structure can have an observable effect on the seismic response of a smaller and less stiff structure
Spatial-structural interaction and strain energy structural optimisation
Hofmeyer, H.; Davila Delgado, J.M.; Borrmann, A.; Geyer, P.; Rafiq, Y.; Wilde, de P.
2012-01-01
A research engine iteratively transforms spatial designs into structural designs and vice versa. Furthermore, spatial and structural designs are optimised. It is suggested to optimise a structural design by evaluating the strain energy of its elements and by then removing, adding, or changing the
International Nuclear Information System (INIS)
Gantayat, A.; Kamil, H.
1981-01-01
The dynamic soil-structure and structure-to-structure interaction effects may be determined in one of the two ways: by modeling the entire soil-structure system by a finite-element model, or by using a frequency-dependent (or frequency-independent) impedance function approach. In seismic design of nuclear power plant structures, the normal practice is to use the first approach because of its simplicity and easy availability of computer codes to perform such analyses. However, in the finite-element approach, because of the size and cost restrictions, the three-dimensional behavior of the entire soil-structure system and the radiation damping in soil are only approximately included by using a two-dimensional finite-element mesh. In using the impedance function approach, the soil-structure analyses can be performed in four steps: (a) determination of the dynamic properties of the fixed base superstructure, (b) determination of foundation and structure impedance matrices and input motions, (c) evaluation of foundation motion, (d) analysis of the fixed base superstructure using computed foundation motion. (orig./RW)
Structural priority approach to fluid-structure interaction problems
International Nuclear Information System (INIS)
Au-Yang, M.K.; Galford, J.E.
1981-01-01
In a large class of dynamic problems occurring in nuclear reactor safety analysis, the forcing function is derived from the fluid enclosed within the structure itself. Since the structural displacement depends on the fluid pressure, which in turn depends on the structural boundaries, a rigorous approach to this class of problems involves simultaneous solution of the coupled fluid mechanics and structural dynamics equations with the structural response and the fluid pressure as unknowns. This paper offers an alternate approach to the foregoing problems. 8 refs
Charge structure of K-p interactions
International Nuclear Information System (INIS)
Goettgens, R.; Ransone, G.; Sixel, P.
1981-01-01
The charge transfer distribution, its average, dispersion and skewness are studied in K - p interactions at 110 GeV/c and lower energies. The ratio of dispersion squared to rapidity plateau height is found to be energy independent as suggested by the neutral cluster models. The short range charge correlations in rapidity are observed at all energies; at 110 GeV/c there is also evidence for a long range component. (author)
Cellular structures in a system of interacting particles
International Nuclear Information System (INIS)
Lev, B.I.
2009-01-01
The general description of the formation of a cellular structure in the system of interacting particles is proposed. The analytical results for possible cellular structures in the usual colloidal systems, systems of particles immersed in a liquid crystal, and gravitational systems have been presented. It is shown that the formation of a cellular structure in all systems of interacting particles at different temperatures and concentrations of particles has the same physical nature
Mahmoudpour, Sanaz; Attarnejad, Reza; Behnia, Cambyse
2011-01-01
Analysis and design of structures subjected to arbitrary dynamic loadings especially earthquakes have been studied during past decades. In practice, the effects of soil-structure interaction on the dynamic response of structures are usually neglected. In this study, the effect of soil-structure interaction on the dynamic response of structures has been examined. The substructure method using dynamic stiffness of soil is used to analyze soil-structure system. A coupled model based on finite el...
Validation of seismic soil-structure interaction
International Nuclear Information System (INIS)
Finn, Liam W.D.; Ledbetter, R.H.; Beratan, L.L.
1988-01-01
Simulated earthquake tests were conducted on centrifuged model structures embedded in dry and saturated sand foundations. Accelerations and pore water pressures were recorded at many locations during the test. Model responses were analyzed using the program TARA-3 which incorporates a procedure for nonlinear dynamic effective stress analysis. Computed and measured responses agreed quite closely. (author)
Human-structure Interaction and Implications
DEFF Research Database (Denmark)
Pedersen, Lars
2016-01-01
On civil engineering structures human occupancy is often modeled as a static load. Modeling humans as a static load is a simplification of matters, as will be demonstrated in the paper. The paper addresses the complexity of having both passive humans (sitting or standing) as well as active humans...
Validation of seismic soil-structure interaction
Energy Technology Data Exchange (ETDEWEB)
Finn, Liam W.D. [Department of Civil Engineering, University of British Columbia, Vancouver (Canada); Ledbetter, R H [USAE Waterways Experiment Station, Vicksburg (United States); Beratan, L L [U.S. Nuclear Regulatory Commission, Office of Research, Washington, DC (United States)
1988-07-01
Simulated earthquake tests were conducted on centrifuged model structures embedded in dry and saturated sand foundations. Accelerations and pore water pressures were recorded at many locations during the test. Model responses were analyzed using the program TARA-3 which incorporates a procedure for nonlinear dynamic effective stress analysis. Computed and measured responses agreed quite closely. (author)
Topology optimization for acoustic-structure interaction problems
DEFF Research Database (Denmark)
Yoon, Gil Ho; Jensen, Jakob Søndergaard; Sigmund, Ole
2006-01-01
We propose a gradient based topology optimization algorithm for acoustic-structure (vibro-acoustic) interaction problems without an explicit interfacing boundary representation. In acoustic-structure interaction problems, the pressure field and the displacement field are governed by the Helmholtz...... to subdomain interfaces evolving during the optimization process. In this paper, we propose to use a mixed finite element formulation with displacements and pressure as primary variables (u/p formulation) which eliminates the need for explicit boundary representation. In order to describe the Helmholtz......-dimensional acoustic-structure interaction problems are optimized to show the validity of the proposed method....
Cluster structures influenced by interaction with a surface.
Witt, Christopher; Dieterich, Johannes M; Hartke, Bernd
2018-05-30
Clusters on surfaces are vitally important for nanotechnological applications. Clearly, cluster-surface interactions heavily influence the preferred cluster structures, compared to clusters in vacuum. Nevertheless, systematic explorations and an in-depth understanding of these interactions and how they determine the cluster structures are still lacking. Here we present an extension of our well-established non-deterministic global optimization package OGOLEM from isolated clusters to clusters on surfaces. Applying this approach to intentionally simple Lennard-Jones test systems, we produce a first systematic exploration that relates changes in cluster-surface interactions to resulting changes in adsorbed cluster structures.
MRI in Optic Neuritis: Structure, Function, Interactions
DEFF Research Database (Denmark)
Fuglø, Dan
2011-01-01
resonance imaging (MRI), and the visual evoked potential (VEP) continues to show a delayed P100 indicating persistent demyelination. The explanation for this apparent discrepancy between structure and function could be due to either a redundancy in the visual pathways so that some degree of signal loss...... will have very few or no clinical symptoms, or it could be due to compensatory mechanisms in the visual pathway or the visual cortex. In order to understand the pathophysiology and recovery processes in ON it is essential to have sensitive methods to asses both structure and function. These methods...... are low. Functional MRI (fMRI) is a non-invasive technique that can measure brain activity with a high spatial resolution. Recently, technical and methodological advancements have made it feasible to record VEPs and fMRI simultaneously and the relationship between averaged VEPs and averaged fMRI signals...
Interactive visualization tools for the structural biologist.
Porebski, Benjamin T; Ho, Bosco K; Buckle, Ashley M
2013-10-01
In structural biology, management of a large number of Protein Data Bank (PDB) files and raw X-ray diffraction images often presents a major organizational problem. Existing software packages that manipulate these file types were not designed for these kinds of file-management tasks. This is typically encountered when browsing through a folder of hundreds of X-ray images, with the aim of rapidly inspecting the diffraction quality of a data set. To solve this problem, a useful functionality of the Macintosh operating system (OSX) has been exploited that allows custom visualization plugins to be attached to certain file types. Software plugins have been developed for diffraction images and PDB files, which in many scenarios can save considerable time and effort. The direct visualization of diffraction images and PDB structures in the file browser can be used to identify key files of interest simply by scrolling through a list of files.
Structural biology by NMR: structure, dynamics, and interactions.
Directory of Open Access Journals (Sweden)
Phineus R L Markwick
2008-09-01
Full Text Available The function of bio-macromolecules is determined by both their 3D structure and conformational dynamics. These molecules are inherently flexible systems displaying a broad range of dynamics on time-scales from picoseconds to seconds. Nuclear Magnetic Resonance (NMR spectroscopy has emerged as the method of choice for studying both protein structure and dynamics in solution. Typically, NMR experiments are sensitive both to structural features and to dynamics, and hence the measured data contain information on both. Despite major progress in both experimental approaches and computational methods, obtaining a consistent view of structure and dynamics from experimental NMR data remains a challenge. Molecular dynamics simulations have emerged as an indispensable tool in the analysis of NMR data.
Soil-structure interaction analysis of ZPR6 reactor facility
International Nuclear Information System (INIS)
Ma, D.C.; Ahmed, H.U.
1981-01-01
Due to the computer storage limitation and economic concern, the current practice of soil-structure interaction analysis is limited to two dimensional analysis. The 2-D plane strain finite element program, FLUSH, is one often most used program in the analysis. Seismic response of soil and basement can be determined very well by FLUSH. The response of the structure above ground level, however, is often underestimated. This is mainly due to the three dimensional characteristics of the structures. This paper describes a detailed soil-structure interaction analysis of a rectangular embedded structure in conjunction with FLUSH program. The objective of the analysis is to derive the mean interaction motions at the structure base and the soil dynamic forces exerted on the basement lateral walls. The base motions and lateral soil dynamic forces are the specified boundary conditions for the later 3-D building response analysis. (orig./RW)
Electromagnetic and structural interaction analysis of curved shell structures
International Nuclear Information System (INIS)
Horie, T.; Niho, T.
1993-01-01
This paper describes a finite element formulation of the eddy current and structure coupled problem for curved shell structures. Coupling terms produced by curved geometry as well as flat plate geometry were obtained. Both matrix equations for eddy current and structure were solved simultaneously using coupling sub-matrices. TEAM Workshop bench mark problem 16 was solved to verify the formulation and the computer code. Agreement with experimental results was very good for such plate problem. A coupled problem for cylindrical shell structure was also analyzed. Influence of each coupling term was examined. The next topic is the eigenvalues of the coupled equations. Although the coupled matrix equations are not symmetric, symmetry was obtained by introducing a symmetrizing variable. The eigenvalues of the coupled matrix equations are different from those obtained from the uncoupled equations because of the influence of the coupling sub-matrix components. Some parameters obtained by the eigenvalue analysis have characteristics of parameters which indicate the intensity of electromagnetic structural coupling effect. (author)
Three-Dimensional Structural Aspects of Protein–Polysaccharide Interactions
Directory of Open Access Journals (Sweden)
Masamichi Nagae
2014-03-01
Full Text Available Linear polysaccharides are typically composed of repeating mono- or disaccharide units and are ubiquitous among living organisms. Polysaccharide diversity arises from chain-length variation, branching, and additional modifications. Structural diversity is associated with various physiological functions, which are often regulated by cognate polysaccharide-binding proteins. Proteins that interact with linear polysaccharides have been identified or developed, such as galectins and polysaccharide-specific antibodies, respectively. Currently, data is accumulating on the three-dimensional structure of polysaccharide-binding proteins. These proteins are classified into two types: exo-type and endo-type. The former group specifically interacts with the terminal units of polysaccharides, whereas the latter with internal units. In this review, we describe the structural aspects of exo-type and endo-type protein-polysaccharide interactions. Further, we discuss the structural basis for affinity and specificity enhancement in the face of inherently weak binding interactions.
Dynamic soil-structure interactions on embedded buildings
International Nuclear Information System (INIS)
Kobarg, J.; Werkle, H.; Henseleit, O.
1983-01-01
The dynamic soil-structure interaction on the horizontal seismic excitation is investigated on two typical embedded auxiliary buildings of a nuclear power plant. The structure and the soil are modelled by various analytical and numerical methods. Under the condition of the linear viscoelastic theory, i.e. soil characteristic constant in time and independent of strain, the interaction influences between a homogenous soil layer and a structure are analysied for the following parameters: 4) mathematical soil modells; 4) mathematical structure modells; 4) shear wave velocities; 3) embedment conditions; 4) earthquake time histories. (orig.) [de
Wu, Li; Chai, Dinggeng; Fraser, Marie E.; Zimmerly, Steven
2012-01-01
Tetraloop-receptor interactions are prevalent structural units in RNAs, and include the GAAA/11-nt and GNRA-minor groove interactions. In this study, we have compiled a set of 78 nonredundant loop-helix interactions from X-ray crystal structures, and examined them for the extent of their sequence and structural variation. Of the 78 interactions in the set, only four were classical GAAA/11-nt motifs, while over half (48) were GNRA-minor groove interactions. The GNRA-minor groove interactions were not a homogeneous set, but were divided into five subclasses. The most predominant subclass is characterized by two triple base pair interactions in the minor groove, flanked by two ribose zipper contacts. This geometry may be considered the “standard” GNRA-minor groove interaction, while the other four subclasses are alternative ways to form interfaces between a minor groove and tetraloop. The remaining 26 structures in the set of 78 have loops interacting with mostly idiosyncratic receptors. Among the entire set, a number of sequence-structure correlations can be identified, which may be used as initial hypotheses in predicting three-dimensional structures from primary sequences. Conversely, other sequence patterns are not predictive; for example, GAAA loop sequences and GG/CC receptors bind to each other with three distinct geometries. Finally, we observe an example of structural evolution in group II introns, in which loop-receptor motifs are substituted for each other while maintaining the larger three-dimensional geometry. Overall, the study gives a more complete view of RNA loop-helix interactions that exist in nature. PMID:23152878
Predicting and validating protein interactions using network structure.
Directory of Open Access Journals (Sweden)
Pao-Yang Chen
2008-07-01
Full Text Available Protein interactions play a vital part in the function of a cell. As experimental techniques for detection and validation of protein interactions are time consuming, there is a need for computational methods for this task. Protein interactions appear to form a network with a relatively high degree of local clustering. In this paper we exploit this clustering by suggesting a score based on triplets of observed protein interactions. The score utilises both protein characteristics and network properties. Our score based on triplets is shown to complement existing techniques for predicting protein interactions, outperforming them on data sets which display a high degree of clustering. The predicted interactions score highly against test measures for accuracy. Compared to a similar score derived from pairwise interactions only, the triplet score displays higher sensitivity and specificity. By looking at specific examples, we show how an experimental set of interactions can be enriched and validated. As part of this work we also examine the effect of different prior databases upon the accuracy of prediction and find that the interactions from the same kingdom give better results than from across kingdoms, suggesting that there may be fundamental differences between the networks. These results all emphasize that network structure is important and helps in the accurate prediction of protein interactions. The protein interaction data set and the program used in our analysis, and a list of predictions and validations, are available at http://www.stats.ox.ac.uk/bioinfo/resources/PredictingInteractions.
Applications in soil-structure interactions. Final report, June 1979
International Nuclear Information System (INIS)
Jhaveri, D.P.
1979-01-01
Complex phenomenon of soil-structure interaction was assessed. Relationships between the characteristics of the earthquake ground motions, the local soil and geologic conditions, and the response of the structures to the ground motions were studied. (I) The use of the explicit finite-difference method to study linear elastic soil-structure interaction is described. A linear two-dimensional study of different conditions that influence the dynamic compliance and scattering properties of foundations is presented. (II) The FLUSH computer code was used to compute the soil-structure interaction during SIMQUAKE 1B, an experimental underground blast excitation of a 1/12-scale model of a nuclear containment structure. Evaluation was performed using transient excitation, applied to a finite-difference grid. Dynamic foundation properties were studied. Results indicate that the orientation and location of the source relative to the site and the wave environment at the site may be important parameters to be considered. Differences between the computed and experimental recorded responses are indicated, and reasons for the discrepancy are suggested. (III) A case study that examined structural and ground response data tabulated and catalogued from tests at the Nevada Test Site for its applicability to the soil-structure interaction questions of interest is presented. Description, methods, and evaluation of data on soil-structure interaction from forced vibration tests are presented. A two-dimensional finite-difference grid representing a relatively rigid structure resting on uniform ground was analyzed and monitored. Fourier spectra of monitored time histories were also evaluated and are presented. Results show clear evidence of soil-structure interaction and significant agreement with theory. 128 figures, 18 tables
Aromatic-Aromatic Interactions in Biological System: Structure Activity Relationships
International Nuclear Information System (INIS)
Rajagopal, Appavu; Deepa, Mohan; Govindaraju, Munisamy
2016-01-01
While, intramolecular hydrogen bonds have attracted the greatest attention in studies of peptide conformations, the recognition that several other weakly polar interactions may be important determinants of folded structure has been growing. Burley and Petsko provided a comprehensive overview of the importance of weakly polar interactions, in shaping protein structures. The interactions between aromatic rings, which are spatially approximate, have attracted special attention. A survey of the proximal aromatic residue pairs in proteins, allowed Burley and Petsko to suggest that, “phenyl ring centroids are separated by a preferential distance of between 4.5 and 7 Å, and dihedral angles approximately 90° are most common”
Aromatic-Aromatic Interactions in Biological System: Structure Activity Relationships
Energy Technology Data Exchange (ETDEWEB)
Rajagopal, Appavu; Deepa, Mohan [Molecular Biophysics Unit, Indian Institute of Sciences-Bangalore, Karnataka (India); Govindaraju, Munisamy [Bio-Spatial Technology Research Unit, Department of Environmental Biotechnology, School of Environmental Sciences, Bharathidasan University, Tiruchirappalli, Tamil Nadu (India)
2016-02-26
While, intramolecular hydrogen bonds have attracted the greatest attention in studies of peptide conformations, the recognition that several other weakly polar interactions may be important determinants of folded structure has been growing. Burley and Petsko provided a comprehensive overview of the importance of weakly polar interactions, in shaping protein structures. The interactions between aromatic rings, which are spatially approximate, have attracted special attention. A survey of the proximal aromatic residue pairs in proteins, allowed Burley and Petsko to suggest that, “phenyl ring centroids are separated by a preferential distance of between 4.5 and 7 Å, and dihedral angles approximately 90° are most common”.
Computation of wave fields and soil structure interaction
International Nuclear Information System (INIS)
Lysmer, J.W.
1982-01-01
The basic message of the lecture is that the determination of the temporal and spatial variation of the free-field motions is the most important part of any soil-structure interaction analysis. Any interaction motions may be considered as small aberrations superimposed on the free-field motions. The current definition of the soil-structure interaction problem implies that superposition must be used, directly or indirectly, in any rational method of analysis of this problem. This implies that the use of nonlinear procedures in any part of a soil-structure interaction analysis must be questioned. Currently the most important part of the soil-structure interaction analysis, the free-field problem, cannot be solved by nonlinear methods. Hence, it does not seem reasonable to spend a large effort on trying to obtain nonlinear solutions for the interaction part of the problem. Even if such solutions are obtained they cannot legally be superimposed on the free-field motions to obtain the total motions of the structure. This of course does not preclude the possibility that such an illegal procedure may lead to solutions which are close enough for engineering purposes. However, further research is required to make a decision on this issue
Connecting Protein Structure to Intermolecular Interactions: A Computer Modeling Laboratory
Abualia, Mohammed; Schroeder, Lianne; Garcia, Megan; Daubenmire, Patrick L.; Wink, Donald J.; Clark, Ginevra A.
2016-01-01
An understanding of protein folding relies on a solid foundation of a number of critical chemical concepts, such as molecular structure, intra-/intermolecular interactions, and relating structure to function. Recent reports show that students struggle on all levels to achieve these understandings and use them in meaningful ways. Further, several…
Some aspects of the interaction between systems- and structural reliability
International Nuclear Information System (INIS)
Schueller, G.K.; Schmitt, W.
1979-01-01
The purpose of this paper is to study the interaction between systems- and structural reliability analysis with reference to the design of structural components of LWR. Presently the evaluation of systems reliability is carried out apart from structural reliability analysis. Moreover, two basically different methodologies are used for analysis. While in systems analysis the simplified binary approach is still generally accepted, in structural reliability one has to resort to more sophisticated procedures to obtain realistic results. The interactive effect may be illustrated as follows: For example, the integrity of the primary circuit interacts with the integrity of the containment structure. This means that the probability of occurrence of the pipe rupture which may cause a LOCA and consequently leads to a build-up of temperature and pressure within the containment affects directly its structural reliability. The piping system, particularly the primary piping, in turn interacts with the protective system, which is part of the safety system. This piping structure is also subjected to various operational loading conditions. In a numerical example dealing with leakage probabilities of pipes it is shown how methods of structural reliability may be used to gain more insight in the estimation of failure rates of system components. (orig.)
Structural stability of interaction networks against negative external fields
Yoon, S.; Goltsev, A. V.; Mendes, J. F. F.
2018-04-01
We explore structural stability of weighted and unweighted networks of positively interacting agents against a negative external field. We study how the agents support the activity of each other to confront the negative field, which suppresses the activity of agents and can lead to collapse of the whole network. The competition between the interactions and the field shape the structure of stable states of the system. In unweighted networks (uniform interactions) the stable states have the structure of k -cores of the interaction network. The interplay between the topology and the distribution of weights (heterogeneous interactions) impacts strongly the structural stability against a negative field, especially in the case of fat-tailed distributions of weights. We show that apart from critical slowing down there is also a critical change in the system structure that precedes the network collapse. The change can serve as an early warning of the critical transition. To characterize changes of network structure we develop a method based on statistical analysis of the k -core organization and so-called "corona" clusters belonging to the k -cores.
ERCOFTAC Symposium on Unsteady Separation in Fluid-Structure Interaction
Bottaro, Alessandro; Thompson, Mark
2016-01-01
This book addresses flow separation within the context of fluid-structure interaction phenomena. Here, new findings from two research communities focusing on fluids and structures are brought together, emphasizing the importance of a unified multidisciplinary approach. The book covers the theory, experimental findings, numerical simulations, and modeling in fluid dynamics and structural mechanics for both incompressible and compressible separated unsteady flows. There is a focus on the morphing of lifting structures in order to increase their aerodynamic and/or hydrodynamic performances, to control separation and to reduce noise, as well as to inspire the design of novel structures. The different chapters are based on contributions presented at the ERCOFTAC Symposium on Unsteady Separation in Fluid-Structure Interaction held in Mykonos, Greece, 17-21 June, 2013 and include extended discussions and new highlights. The book is intended for students, researchers and practitioners in the broad field of computatio...
Semenova, Larissa A.; Kazantseva, Anastassiya I.; Sergeyeva, Valeriya V.; Raklova, Yekaterina M.; Baiseitova, Zhanar B.
2016-01-01
The study covers the problems of pedagogical technologies and their experimental implementation in the learning process. The theoretical aspects of the "student-teacher" interaction are investigated. A structural and functional model of pedagogical interaction is offered, which determines the conditions for improving pedagogical…
Interactive Hangman teaches amino acid structures and abbreviations
Pennington, BO; Sears, D; Clegg, DO
2014-01-01
© 2014 by The International Union of Biochemistry and Molecular Biology, 42(6):495-500, 2014. We developed an interactive exercise to teach students how to draw the structures of the 20 standard amino acids and to identify the one-letter abbreviations by modifying the familiar game of "Hangman." Amino acid structures were used to represent single letters throughout the game. To provide additional practice in identifying structures, hints to the answers were written in "amino acid sentences" f...
Reliability evaluation of containments including soil-structure interaction
International Nuclear Information System (INIS)
Pires, J.; Hwang, H.; Reich, M.
1985-12-01
Soil-structure interaction effects on the reliability assessment of containment structures are examined. The probability-based method for reliability evaluation of nuclear structures developed at Brookhaven National Laboratory is extended to include soil-structure interaction effects. In this method, reliability of structures is expressed in terms of limit state probabilities. Furthermore, random vibration theory is utilized to calculate limit state probabilities under random seismic loads. Earthquake ground motion is modeled by a segment of a zero-mean, stationary, filtered Gaussian white noise random process, represented by its power spectrum. All possible seismic hazards at a site, represented by a hazard curve, are also included in the analysis. The soil-foundation system is represented by a rigid surface foundation on an elastic halfspace. Random and other uncertainties in the strength properties of the structure, in the stiffness and internal damping of the soil, are also included in the analysis. Finally, a realistic reinforced concrete containment is analyzed to demonstrate the application of the method. For this containment, the soil-structure interaction effects on; (1) limit state probabilities, (2) structural fragility curves, (3) floor response spectra with probabilistic content, and (4) correlation coefficients for total acceleration response at specified structural locations, are examined in detail. 25 refs., 21 figs., 12 tabs
Universality Classes of Interaction Structures for NK Fitness Landscapes
Hwang, Sungmin; Schmiegelt, Benjamin; Ferretti, Luca; Krug, Joachim
2018-02-01
Kauffman's NK-model is a paradigmatic example of a class of stochastic models of genotypic fitness landscapes that aim to capture generic features of epistatic interactions in multilocus systems. Genotypes are represented as sequences of L binary loci. The fitness assigned to a genotype is a sum of contributions, each of which is a random function defined on a subset of k ≤ L loci. These subsets or neighborhoods determine the genetic interactions of the model. Whereas earlier work on the NK model suggested that most of its properties are robust with regard to the choice of neighborhoods, recent work has revealed an important and sometimes counter-intuitive influence of the interaction structure on the properties of NK fitness landscapes. Here we review these developments and present new results concerning the number of local fitness maxima and the statistics of selectively accessible (that is, fitness-monotonic) mutational pathways. In particular, we develop a unified framework for computing the exponential growth rate of the expected number of local fitness maxima as a function of L, and identify two different universality classes of interaction structures that display different asymptotics of this quantity for large k. Moreover, we show that the probability that the fitness landscape can be traversed along an accessible path decreases exponentially in L for a large class of interaction structures that we characterize as locally bounded. Finally, we discuss the impact of the NK interaction structures on the dynamics of evolution using adaptive walk models.
Optimization of mathematical models for soil structure interaction
International Nuclear Information System (INIS)
Vallenas, J.M.; Wong, C.K.; Wong, D.L.
1993-01-01
Accounting for soil-structure interaction in the design and analysis of major structures for DOE facilities can involve significant costs in terms of modeling and computer time. Using computer programs like SASSI for modeling major structures, especially buried structures, requires the use of models with a large number of soil-structure interaction nodes. The computer time requirements (and costs) increase as a function of the number of interaction nodes to the third power. The added computer and labor cost for data manipulation and post-processing can further increase the total cost. This paper provides a methodology to significantly reduce the number of interaction nodes. This is achieved by selectively increasing the thickness of soil layers modeled based on the need for the mathematical model to capture as input only those frequencies that can actually be transmitted by the soil media. The authors have rarely found that a model needs to capture frequencies as high as 33 Hz. Typically coarser meshes (and a lesser number of interaction nodes) are adequate
Two stage approach to dynamic soil structure interaction
International Nuclear Information System (INIS)
Nelson, I.
1981-01-01
A two stage approach is used to reduce the effective size of soil island required to solve dynamic soil structure interaction problems. The ficticious boundaries of the conventional soil island are chosen sufficiently far from the structure so that the presence of the structure causes only a slight perturbation on the soil response near the boundaries. While the resulting finite element model of the soil structure system can be solved, it requires a formidable computational effort. Currently, a two stage approach is used to reduce this effort. The combined soil structure system has many frequencies and wavelengths. For a stiff structure, the lowest frequencies are those associated with the motion of the structure as a rigid body. In the soil, these modes have the longest wavelengths and attenuate most slowly. The higher frequency deformational modes of the structure have shorter wavelengths and their effect attenuates more rapidly with distance from the structure. The difference in soil response between a computation with a refined structural model, and one with a crude model, tends towards zero a very short distance from the structure. In the current work, the 'crude model' is a rigid structure with the same geometry and inertial properties as the refined model. Preliminary calculations indicated that a rigid structure would be a good low frequency approximation to the actual structure, provided the structure was much stiffer than the native soil. (orig./RW)
Hollmann, Ferdinand
2013-01-01
This contributed volume collects the scientific results of the DFG Priority Program 1180 Prediction and Manipulation of Interactions between Structure and Process. The research program has been conducted during the years 2005 and 2012, whereas the primary goal was the analysis of the interactions between processes and structures in modern production facilities. This book presents the findings of the 20 interdisciplinary subprojects, focusing on different manufacturing processes such as high performance milling, tool grinding or metal forming. It contains experimental investigations as well as mathematical modeling of production processes and machine interactions. New experimental advancements and novel simulation approaches are also included.
Influence of soil-structure interaction on floor response spectra
International Nuclear Information System (INIS)
Costantino, C.J.; Miller, C.A.; Curreri, J.R.
1985-01-01
A study was undertaken to investigate the influence of soil-structure interaction on floor response spectra developed in typical nuclear power plant structures. A horizontal earthquake time history, whose spectra envelops the Reg. Guide 1.60 criteria and is scaled to a 1 g peak acceleration, was used as input to structural models. Two different structural stick models were used, representing typical BWR and PWR facilities. By varying the structural and soil stiffness parameters, a wide range of system behaviors were investigated. Floor response spectra, required to assess equipment qualification, were of primary interest. It was found from a variation of parameter study that the interaction soil parameters, particularly radiation damping, greatly affect the nature of the calculated responses. (orig.)
A review of experimental soil-structure interaction damping
International Nuclear Information System (INIS)
Tsai, N.C.
1981-01-01
In soil-structure interaction analysis, the foundation soil is usually represented by impedance springs and dampers. The impedance damping includes the effect of both the material damping and the radiation damping. Because the impedance theory normally assumes a rigid structural base and an elastic bond between the soil and structure, it is generally held that the radiation damping has been overestimated by the theory. There are some published information on the dynamic tests of footings and structures that allow direct or indirect assessments of the validity of the analytical radiation damping. An overview of such information is presented here. Based on these limited test data, it is concluded that for horizontal soil-structure interaction analysis the analytical radiation damping alone is sufficient to represent the combined material and radiation damping in the field. On the other hand, for vertical analysis it appears that the theory may have overestimated the radiation damping and certain reduction is recommended. (orig.)
Influence of soil-structure interaction on floor response spectra
International Nuclear Information System (INIS)
Costantino, C.J.; Miller, C.A.; Curreri, J.R.
1985-01-01
A study was undertaken to investigate the influence of soil-structure interaction on floor response spectra developed in typical nuclear power plant structures. A horizontal earthquake time history, whose spectra envelops the Regulatory Guide 1.60 criteria and is scaled to a log peak acceleration, was used as input to structural models. Two different structural stick models were used, representing typical BWR and PWR facilities. By varying the structural and soil stiffness parameters, a wide range of system behaviors were investigated. Floor response spectra, required to assess equipment qualification, were of primary interest. It was found from a variation of parameter study that the interaction soil parameters, particularly radiation damping, greatly affect the nature of the calculated responses. 2 refs., 2 figs., 2 tabs
Fluid-structure interactions models, analysis and finite elements
Richter, Thomas
2017-01-01
This book starts by introducing the fundamental concepts of mathematical continuum mechanics for fluids and solids and their coupling. Special attention is given to the derivation of variational formulations for the subproblems describing fluid- and solid-mechanics as well as the coupled fluid-structure interaction problem. Two monolithic formulations for fluid-structure interactions are described in detail: the well-established ALE formulation and the modern Fully Eulerian formulation, which can effectively deal with problems featuring large deformation and contact. Further, the book provides details on state-of-the-art discretization schemes for fluid- and solid-mechanics and considers the special needs of coupled problems with interface-tracking and interface-capturing techniques. Lastly, advanced topics like goal-oriented error estimation, multigrid solution and gradient-based optimization schemes are discussed in the context of fluid-structure interaction problems.
Directory of Open Access Journals (Sweden)
Pan Dan-guang
2015-01-01
Full Text Available For realizing the variation of structural dynamic characteristics due to neighbor structure in buildings group, the surface structure is idealized as an equivalent single degree of freedom system with rigid base whose site consists of a single homogeneous layer. Based on the model, a equivalent method on the equivalent seismic excitation is proposed. Then, the differences of seismic response and equivalent seismic input between soil - structure interaction (SSI system and structure -soil-structure interaction (SSSI system are investigated by harmonic analysis. The numerical results show that dynamic responses would be underestimated in SSSI system when the forcing frequencies are close to the Natural frequency if the effects of neighborhood structure were ignored. Neighborhood structure would make the translational displacement increase and rocking vibration decrease. When establishing an effective seismic input, it is necessary to consider the impact of inertia interaction.
Some considerations on the dynamic structure-soil-structure interactions analysis
International Nuclear Information System (INIS)
Matthees, W.
1979-01-01
A mixed method has been developed for the approximate analysis of soil-structure or structure-soil-structure interaction problems due to earthquakes. In order to produce comparable results of interaction problems as well as for shallow and for deep soils due to the same earthquake excitation (accelerogram) situated always at the lower bedrock boundary, the analysis is performed in two steps: 1) Calculation of the complex transfer function and the response of the upper interior boundary of a layered soil-system which is connected at its top to a soil-structure-system, using the one-dimensional deconvolution. 2) By making a complete interaction analysis of the surface soil-structure-system using the interior boundary excitation of the calculated response from step 1. The depth of the soil-structure-system must be chosen large enough to exclude interaction effects down to the layered soil-system's interior boundary. (orig.)
Multi-physics fluid-structure interaction modelling software
CSIR Research Space (South Africa)
Malan, AG
2008-11-01
Full Text Available -structure interaction modelling software AG MALAN AND O OXTOBY CSIR Defence, Peace, Safety and Security, PO Box 395, Pretoria, 0001 Email: amalan@csir.co.za – www.csir.co.za Internationally leading aerospace company Airbus sponsored key components... of the development of the CSIR fl uid-structure interaction (FSI) software. Below are extracts from their evaluation of the devel- oped technology: “The fi eld of FSI covers a massive range of engineering problems, each with their own multi-parameter, individual...
An overset grid approach to linear wave-structure interaction
DEFF Research Database (Denmark)
Read, Robert; Bingham, Harry B.
2012-01-01
A finite-difference based approach to wave-structure interaction is reported that employs the overset approach to grid generation. A two-dimensional code that utilizes the Overture C++ library has been developed to solve the linear radiation problem for a floating body of arbitrary form. This sof......A finite-difference based approach to wave-structure interaction is reported that employs the overset approach to grid generation. A two-dimensional code that utilizes the Overture C++ library has been developed to solve the linear radiation problem for a floating body of arbitrary form...
International Nuclear Information System (INIS)
Matthees, W.; Magiera, G.
1982-01-01
A sensitivity study for the interaction effects of adjacent structures of nuclear power plants caused by horizontal seismic excitation has been performed. The key structural and soil parameters for linear and for nonlinear behaviour were varied within their applicable bandwidth. It has been shown that the interaction phenomena can contribute to the response of structures to such a large extent that it cannot be disregarded. (orig.)
Structure, complexity and cooperation in parallel external chat interactions
DEFF Research Database (Denmark)
Grønning, Anette
2012-01-01
This article examines structure, complexity and cooperation in external chat interactions at the workplace in which one of the participants is taking part in multiple parallel conversations. The investigation is based on an analysis of nine chat interactions in a work-related context, with partic......This article examines structure, complexity and cooperation in external chat interactions at the workplace in which one of the participants is taking part in multiple parallel conversations. The investigation is based on an analysis of nine chat interactions in a work-related context...... focus is on “turn-taking organisation as the fundamental and generic aspect of interaction organisation” (Drew & Heritage, 1992, p. 25), including the use of turn-taking rules, adjacency pairs, and the importance of pauses. Even though the employee and the union members do not know one another...... and cannot see, hear, or touch one another, it is possible to detect an informal, pleasant tone in their interactions. This challenges the basically asymmetrical relationship between employee and customer, and one can sense a further level of asymmetry. In terms of medium, chat interactions exist via various...
Topology optimization of fluid-structure-interaction problems in poroelasticity
DEFF Research Database (Denmark)
Andreasen, Casper Schousboe; Sigmund, Ole
2013-01-01
This paper presents a method for applying topology optimization to fluid-structure interaction problems in saturated poroelastic media. The method relies on a multiple-scale method applied to periodic media. The resulting model couples the Stokes flow in the pores of the structure with the deform...... by topology optimization in order to optimize the performance of a shock absorber and test the pressure loading capabilities and optimization of an internally pressurized lid. © 2013 Published by Elsevier B.V....
Interactive diversity promotes the evolution of cooperation in structured populations
International Nuclear Information System (INIS)
Su, Qi; Li, Aming; Zhou, Lei; Wang, Long
2016-01-01
Evolutionary games on networks traditionally assume that each individual adopts an identical strategy to interact with all its neighbors in each generation. Considering the prevalent diversity of individual interactions in the real society, here we propose the concept of interactive diversity, which allows individuals to adopt different strategies against different neighbors in each generation. We investigate the evolution of cooperation based on the edge dynamics rather than the traditional nodal dynamics in networked systems. The results show that, without invoking any other mechanisms, interactive diversity drives the frequency of cooperation to a high level for a wide range of parameters in both well-mixed and structured populations. Even in highly connected populations, cooperation still thrives. When interactive diversity and large topological heterogeneity are combined together, however, in the relaxed social dilemma, cooperation level is lower than that with just one of them, implying that the combination of many promotive factors may make a worse outcome. By an analytical approximation, we get the condition under which interactive diversity provides more advantages for cooperation than traditional evolutionary dynamics does. Numerical simulations validating the approximation are also presented. Our work provides a new line to explore the latent relation between the ubiquitous cooperation and individuals’ distinct responses in different interactions. The presented results suggest that interactive diversity should receive more attention in pursuing mechanisms fostering cooperation. (paper)
Performance of partitioned procedures in fluid-structure interaction
Degroote, J.; Haelterman, R.; Annerel, S.; Bruggeman, P.J.; Vierendeels, J.
2010-01-01
Partitioned simulations of fluid–structure interaction can be solved for the interface’s position with Newton–Raphson iterations but obtaining the exact Jacobian is impossible if the solvers are "black boxes". It is demonstrated that only an approximate Jacobian is needed, as long as it describes
Standard problems to evaluate soil structure interaction computer codes
International Nuclear Information System (INIS)
Miller, C.A.; Costantino, C.J.; Philippacopoulos, A.J.
1979-01-01
The seismic response of nuclear power plant structures is often calculated using lumped parameter methods. A finite element model of the structure is coupled to the soil with a spring-dashpot system used to represent the interaction process. The parameters of the interaction model are based on analytic solutions to simple problems which are idealizations of the actual problems of interest. The objective of the work reported in this paper is to compare predicted responses using the standard lumped parameter models with experimental data. These comparisons are shown to be good for a fairly uniform soil system and for loadings which do not result in nonlinear interaction effects such as liftoff. 7 references, 7 figures
Structural mode significance using INCA. [Interactive Controls Analysis computer program
Bauer, Frank H.; Downing, John P.; Thorpe, Christopher J.
1990-01-01
Structural finite element models are often too large to be used in the design and analysis of control systems. Model reduction techniques must be applied to reduce the structural model to manageable size. In the past, engineers either performed the model order reduction by hand or used distinct computer programs to retrieve the data, to perform the significance analysis and to reduce the order of the model. To expedite this process, the latest version of INCA has been expanded to include an interactive graphical structural mode significance and model order reduction capability.
Fluid-Structure Interaction Mechanisms for Close-In Explosions
Directory of Open Access Journals (Sweden)
Andrew B. Wardlaw Jr.
2000-01-01
Full Text Available This paper examines fluid-structure interaction for close-in internal and external underwater explosions. The resulting flow field is impacted by the interaction between the reflected explosion shock and the explosion bubble. This shock reflects off the bubble as an expansion that reduces the pressure level between the bubble and the target, inducing cavitation and its subsequent collapse that reloads the target. Computational examples of several close-in interaction cases are presented to document the occurrence of these mechanisms. By comparing deformable and rigid body simulations, it is shown that cavitation collapse can occur solely from the shock-bubble interaction without the benefit of target deformation. Addition of a deforming target lowers the flow field pressure, facilitates cavitation and cavitation collapse, as well as reducing the impulse of the initial shock loading.
Directory of Open Access Journals (Sweden)
Yakhlef O.
2017-06-01
Full Text Available A fixed point algorithmis proposed to solve a fluid-structure interaction problem with the supplementary constraint that the structure displacements are limited by a rigid obstacle. Fictitious domain approach with penalization is used for the fluid equations. The surface forces from the fluid acting on the structure are computed using the fluid solution in the structure domain. The continuity of the fluid and structure velocities is imposed through the penalization parameter. The constraint of non-penetration of the elastic structure into the rigid obstacle is treated weakly. A convex constrained optimization problem is solved in order to get the structure displacements. Numerical results are presented.
Fluid/structure interaction in BERDYNE (Level 4)
International Nuclear Information System (INIS)
Fox, M.J.H.
1988-02-01
A fluid-structure interaction capability has been developed for Level 4 of the finite element dynamics code BERDYNE, as part of the BERSAFE structural analysis system. This permits analysis of small amplitude free or forced vibration of systems comprising elastic structural components and inviscid volumes of possibly compressible fluid. Free fluid surfaces under the influence of gravity may be present. The formulation chosen uses the rigid walled fluid modes, calculated in a preliminary stage, as a basis for description of the coupled system, providing symmetric system matrices for which efficient solution procedures are available. The inclusion of the fluid modal variables within the system matrices is carried out through the use of the BERDYNE 'substructuring' feature, which allows the inclusion of very general 'super-elements' among the normal structural elements. The program also has a seismic analysis capability, used for the analysis of fluid-structure systems subjected to a specified support acceleration time history. In this case analysis is carried out in terms of relative structural motions, but absolute fluid pressures. Application of the BERDYNE fluid/structure interaction capability to some simple test cases produced results in good agreement with results obtained by analytic or independent numerical techniques. Full instructions on the use of the facility will be included in the BERDYNE Level 4 documentation. Interim documentation for the pre-release version is available from the author. (author)
Universal structure of a strongly interacting Fermi gas
Energy Technology Data Exchange (ETDEWEB)
Kuhnle, Eva; Dyke, Paul; Hoinka, Sascha; Mark, Michael; Hu Hui; Liu Xiaji; Drummond, Peter; Hannaford, Peter; Vale, Chris, E-mail: cvale@swin.edu.au [ARC Centre of Excellence for Quantum Atom Optics, Swinburne University of Technology, Hawthorn 3122 (Australia)
2011-01-10
This paper presents studies of the universal properties of strongly interacting Fermi gases using Bragg spectroscopy. We focus on pair-correlations, their relationship to the contact C introduced by Tan, and their dependence on both the momentum and temperature. We show that short-range pair correlations obey a universal law, first derived by Tan through measurements of the static structure factor, which displays a universal scaling with the ratio of the contact to the momentum C/q. Bragg spectroscopy of ultracold {sup 6}Li atoms is employed to measure the structure factor for a wide range of momenta and interaction strengths, providing broad confirmation of this universal law. We show that calibrating our Bragg spectra using the f-sum rule leads to a dramatic improvement in the accuracy of the structure factor measurement. We also measure the temperature dependence of the contact in a unitary gas and compare our results to calculations based on a virial expansion.
Generation of equipment response spectrum considering equipment-structure interaction
International Nuclear Information System (INIS)
Lee, Sang Hoon; Yoo, Kwang Hoon
2005-01-01
Floor response spectra for dynamic response of subsystem such as equipment, or piping in nuclear power plant are usually generated without considering dynamic interaction between main structure and subsystem. Since the dynamic structural response generally has the narrow-banded shapes, the resulting floor response spectra developed for various locations in the structure usually have high spectral peak amplitudes in the narrow frequency bands corresponding to the natural frequencies of the structural system. The application of such spectra for design of subsystems often leads to excessive design conservatisms, especially when the equipment frequency and structure are at resonance condition. Thus, in order to provide a rational and realistic design input for dynamic analysis and design of equipment, dynamic equipment-structure interaction (ESI) should be considered in developing equipment response spectrum which is particularly important for equipment at the resonance condition. Many analytical methods have been proposed in the past for developing equipment response spectra considering ESI. However, most of these methods have not been adapted to the practical applications because of either the complexities or the lack of rigorousness of the methods. At one hand, mass ratio among the equipment and structure was used as an important parameter to obtain equipment response spectra. Similarly, Tseng has also proposed the analytical method for developing equipment response spectra using mass ratio in the frequency domain. This method is analytically rigorous and can be easily validated. It is based on the dynamic substructuring method as applied to the dynamic soil-structure interaction (SSI) analysis, and can relatively easily be implemented for practical applications without to change the current dynamic analysis and design practice for subsystems. The equipment response spectra derived in this study are also based on Tseng's proposed method
Dynamical soil-structure interactions: influence of soil behaviour nonlinearities
International Nuclear Information System (INIS)
Gandomzadeh, Ali
2011-01-01
The interaction of the soil with the structure has been largely explored the assumption of material and geometrical linearity of the soil. Nevertheless, for moderate or strong seismic events, the maximum shear strain can easily reach the elastic limit of the soil behavior. Considering soil-structure interaction, the nonlinear effects may change the soil stiffness at the base of the structure and therefore energy dissipation into the soil. Consequently, ignoring the nonlinear characteristics of the dynamic soil-structure interaction (DSSI) this phenomenon could lead to erroneous predictions of structural response. The goal of this work is to implement a fully nonlinear constitutive model for soils into a numerical code in order to investigate the effect of soil nonlinearity on dynamic soil structure interaction. Moreover, different issues are taken into account such as the effect of confining stress on the shear modulus of the soil, initial static condition, contact elements in the soil-structure interface, etc. During this work, a simple absorbing layer method based on a Rayleigh/Caughey damping formulation, which is often already available in existing Finite Element softwares, is also presented. The stability conditions of the wave propagation problems are studied and it is shown that the linear and nonlinear behavior are very different when dealing with numerical dispersion. It is shown that the 10 points per wavelength rule, recommended in the literature for the elastic media is not sufficient for the nonlinear case. The implemented model is first numerically verified by comparing the results with other known numerical codes. Afterward, a parametric study is carried out for different types of structures and various soil profiles to characterize nonlinear effects. Different features of the DSSI are compared to the linear case: modification of the amplitude and frequency content of the waves propagated into the soil, fundamental frequency, energy dissipation in
Soil-structure interaction Vol.3. Influence of ground water
Energy Technology Data Exchange (ETDEWEB)
Costantino, C J
1986-04-01
This study has been performed for the Nuclear Regulatory Commission (NRC) by the Structural Analysis Division of Brookhaven National Laboratory (BNL). The study was conducted during the fiscal year 1965 on the program entitled 'Benchmarking of Structural Engineering Problems' sponsored by NRC. The program considered three separate but complementary problems, each associated with the soil-structure interaction (551) phase of the seismic response analysis of nuclear plant facilities. The reports, all entitled Soil-Structure Interaction, are presented in three separate volumes, namely: Vol. 1 Influence of Layering by AJ Philippacopoulos, Vol. 2 Influence of Lift-Off by C.A. Miller, Vol. 3 Influence of Ground Water by C.J. Costantino. The two problems presented in Volumes 2 and 3 were conducted at the City University of New York (CUNY) under subcontract to BNL. This report, Volume 3 of the report, presents a summary of the first year's effort on the subject of the influence of foundation ground water on the SSI phenomenon. A finite element computer program was developed for the two-phased formulation of the combined soil-water problem. This formulation is based on the Biot dynamic equations of motion for both the solid and fluid phases of a typical soil. Frequency dependent interaction coefficients were generated for the two-dimensional plane problem of a rigid surface footing moving against a saturated linear soil. The results indicate that interaction coefficients are significantly modified as compared to the comparable values for a dry soil, particularly for the rocking mode of response. Calculations were made to study the impact of the modified interaction coefficients on the response of a typical nuclear reactor building. The amplification factors for a stick model placed atop a dry and saturated soil were computed. It was found that pore water caused the rocking response to decrease and translational response to increase over the frequency range of interest, as
Centrifuge modelling of seismic soil structure interaction effects
International Nuclear Information System (INIS)
Ghosh, B.; Madabhushi, S.P.G.
2007-01-01
Proper understanding of the role of unbounded soil in the evaluation of dynamic soil structure interaction (SSI) problem is very important for structures used in the nuclear industry. In this paper, the results from a series of dynamic centrifuge tests are reported. These tests were performed on different types of soil stratifications supporting a rigid containment structure. Test results indicate that accelerations transmitted to the structure's base are dependent on the stiffness degradation in the supporting soil. Steady build up of excess pore pressure leads to softening of the soil, which decreases the shear modulus and shear strength and subsequently changes the dynamic responses. It is also shown that the presence of the structure reduces the translational component of the input base motion and induces rocking of the structure. The test results are compared with some standard formulae used for evaluating interaction in the various building codes. It was concluded that the dynamic shear modulus values used should be representative of the site conditions and can vary dramatically due to softening. Damping values used are still very uncertain and contain many factors, which cannot be accounted in the experiments. It is emphasized that simplified design processes are important to gain an insight into the behaviour of the physical mechanism but for a complete understanding of the SSI effects sophisticated methods are necessary to account for non-linear behaviour of the soil material
Considerations about soil-structures interaction in nuclear power plants
International Nuclear Information System (INIS)
Muzzi, F.
1977-01-01
The main features of the soil-structure interaction for nuclear power plant are presented as they resulted from conservations that the author carried out at the Berkeley (California) University, at the California Institute of Technology and at the U.S. Nuclear Regulatory Commission in Washington (Dec 1975). The complete and inertial interaction approaches of analysis are discussed. The complete approach by the use of finite element technique as suggested by the U.S.N.R.C. Standard Review Plan 3.7.1. (June 1975) is finally described. (author)
Studies on melt-water-structure interaction during severe accidents
International Nuclear Information System (INIS)
Sehgal, B.R.; Dinh, T.N.; Okkonen, T.J.; Bui, V.A.; Nourgaliev, R.R.; Andersson, J.
1996-10-01
Results of a series of studies, on melt-water-structure interactions which occur during the progression of a core melt-down accident, are described. The emphasis is on the in-vessel interactions and the studies are both experimental and analytical. Since, the studies performed resulted in papers published in proceedings of the technical meetings, and in journals, copies of a set of selected papers are attached to provide details. A summary of the results obtained is provided for the reader who does not, or cannot, venture into the perusal of the attached papers. (au)
Studies on melt-water-structure interaction during severe accidents
Energy Technology Data Exchange (ETDEWEB)
Sehgal, B.R.; Dinh, T.N.; Okkonen, T.J.; Bui, V.A.; Nourgaliev, R.R.; Andersson, J. [Royal Inst. of Technology, Div. of Nucl. Power Safety, Stockholm (Sweden)
1996-10-01
Results of a series of studies, on melt-water-structure interactions which occur during the progression of a core melt-down accident, are described. The emphasis is on the in-vessel interactions and the studies are both experimental and analytical. Since, the studies performed resulted in papers published in proceedings of the technical meetings, and in journals, copies of a set of selected papers are attached to provide details. A summary of the results obtained is provided for the reader who does not, or cannot, venture into the perusal of the attached papers. (au).
An experimental study on soil-structure interaction effects
International Nuclear Information System (INIS)
Mita, Akira; Kumagai, Shigeru
1989-01-01
The soil-structure interaction effects play an important role in the earthquake response of large scale structures such as nuclear power plants. Recent decades, many experimental and analytical studies have been conducted. Even though sophisticated analytical tools are ready to use, complicated soil-structure interaction problems such as those with a complex geometry can not be solved yet. For such problems a laboratory experiment is a powerful alternative. In the laboratory experiment, a device to absorb the reflected waves is always necessary to be attached on the boundaries of the soil model to simulate the semi-infiniteness of the actual ground. But unfortunately absorbing devices currently available are far from satisfactory. In this paper, a new experimental method is employed for soil-structure interaction problems to simulate the semi-infiniteness of the actual ground. The present method utilizes the characteristics of transient response to an impulse load so that no special treatment on the boundaries of the soil model is required. This technique is applicable to a linear elastic system whose impulse response decreases to a small enough value before observing the reflected waves. (author)
Structure, complexity and cooperation in parallel external chat interactions
Directory of Open Access Journals (Sweden)
Anette Grønning
2012-09-01
Full Text Available This article examines structure, complexity and cooperation in external chat interactions at the workplace in which one of the participants is taking part in multiple parallel conversations. The investigation is based on an analysis of nine chat interactions in a work-related context, with particular focus on the content of the parallel time spans of the chat interactions. The analysis was inspired by applied conversation analysis (CA. The empirical material has been placed at my disposal by Kristelig Fagbevægelse (Krifa, which is Denmark’s third-largest trade union. The article’s overall focus is on “turn-taking organisation as the fundamental and generic aspect of interaction organisation” (Drew & Heritage, 1992, p. 25, including the use of turn-taking rules, adjacency pairs, and the importance of pauses. Even though the employee and the union members do not know one another and cannot see, hear, or touch one another, it is possible to detect an informal, pleasant tone in their interactions. This challenges the basically asymmetrical relationship between employee and customer, and one can sense a further level of asymmetry. In terms of medium, chat interactions exist via various references to other media, including telephone calls and e-mails.
Significance of structure–soil–structure interaction for closely spaced structures
International Nuclear Information System (INIS)
Roy, Christine; Bolourchi, Said; Eggers, Daniel
2015-01-01
Nuclear facilities typically consist of many closely spaced structures with different sizes and depths of embedment. Seismic response of each structure could be influenced by dynamic structure–soil–structure interaction (SSSI) behavior of adjacent closely spaced structures. This paper examines the impact of SSSI on the in-structure response spectra (ISRS) and peak accelerations of a light structure adjacent to a heavy structure and of a heavy structure adjacent to a similar heavy structure for several soil cases, foundation embedment depths, and separation distances. The impacts of a heavy surface or embedded structure on adjacent ground motions were studied. The analyses demonstrated the adjacent ground motions are sensitive to foundation embedment, soil profile, response frequency, and distance from the structure. Seismic responses of a light structure located near a heavy structure are calculated either by modeling both structures subjected to free field motions, or performing a cascade analysis by considering the light structure model subjected to modified ground motions due to the heavy structure. Cascade SSSI analyses are shown to adequately account for the effect of the heavy structure on the light structure without explicitly modeling both structures together in a single analysis. To further study the influence of SSSI behavior, this paper examines dynamic response of two adjacent heavy structures and compares this response to response of a single heavy structure neglecting adjacent structures. The SSSI responses of the two heavy structures are evaluated for varying soil conditions and structure separation distances using three-dimensional linear SSI analyses and considering anti-symmetry boundary conditions. The analyses demonstrate that the SSSI response of a light or a heavy structure can be influenced by the presence of a nearby heavy structure. Although this study considers linear analysis methodology, the conclusion of SSSI influences on dynamic
Oligomeric protein structure networks: insights into protein-protein interactions
Directory of Open Access Journals (Sweden)
Brinda KV
2005-12-01
Full Text Available Abstract Background Protein-protein association is essential for a variety of cellular processes and hence a large number of investigations are being carried out to understand the principles of protein-protein interactions. In this study, oligomeric protein structures are viewed from a network perspective to obtain new insights into protein association. Structure graphs of proteins have been constructed from a non-redundant set of protein oligomer crystal structures by considering amino acid residues as nodes and the edges are based on the strength of the non-covalent interactions between the residues. The analysis of such networks has been carried out in terms of amino acid clusters and hubs (highly connected residues with special emphasis to protein interfaces. Results A variety of interactions such as hydrogen bond, salt bridges, aromatic and hydrophobic interactions, which occur at the interfaces are identified in a consolidated manner as amino acid clusters at the interface, from this study. Moreover, the characterization of the highly connected hub-forming residues at the interfaces and their comparison with the hubs from the non-interface regions and the non-hubs in the interface regions show that there is a predominance of charged interactions at the interfaces. Further, strong and weak interfaces are identified on the basis of the interaction strength between amino acid residues and the sizes of the interface clusters, which also show that many protein interfaces are stronger than their monomeric protein cores. The interface strengths evaluated based on the interface clusters and hubs also correlate well with experimentally determined dissociation constants for known complexes. Finally, the interface hubs identified using the present method correlate very well with experimentally determined hotspots in the interfaces of protein complexes obtained from the Alanine Scanning Energetics database (ASEdb. A few predictions of interface hot
On RNA-RNA interaction structures of fixed topological genus.
Fu, Benjamin M M; Han, Hillary S W; Reidys, Christian M
2015-04-01
Interacting RNA complexes are studied via bicellular maps using a filtration via their topological genus. Our main result is a new bijection for RNA-RNA interaction structures and a linear time uniform sampling algorithm for RNA complexes of fixed topological genus. The bijection allows to either reduce the topological genus of a bicellular map directly, or to lose connectivity by decomposing the complex into a pair of single stranded RNA structures. Our main result is proved bijectively. It provides an explicit algorithm of how to rewire the corresponding complexes and an unambiguous decomposition grammar. Using the concept of genus induction, we construct bicellular maps of fixed topological genus g uniformly in linear time. We present various statistics on these topological RNA complexes and compare our findings with biological complexes. Furthermore we show how to construct loop-energy based complexes using our decomposition grammar. Copyright © 2015 Elsevier Inc. All rights reserved.
A sensitivity study for soil-structure interaction
International Nuclear Information System (INIS)
Kunar, R.R.; White, D.C.; Ashdown, M.J.; Waker, C.H.; Daintith, D.
1981-01-01
This paper presents the results of a study in which the sensitivity of a containment building typical of one type of construction used in the nuclear reprocessing industry is examined for variations in soil data and seismic input. A number of dynamic soil-structure interaction analyses are performed on the structure and its foundations using parametric variations of the depth of soil layer, soil material properties, bedrock flexibility, seismic input location and time and phase characteristics of the earthquake excitation. Previous experience is combined with the results obtained to gneralise conclusions regarding the conditions under which each of the uncertainties will be significant enough to merit proper statistical treatment. (orig.)
CISM Summer School on Fluid-Structure Interactions in Acoustics
1999-01-01
The subject of the book is directly related to environmental noise and vibration phenomena (sound emission by vibrating structures, prediction and reduction, ...). Transportation noise is one of the main applications. The book presents an overview of the most recent knowledge on interaction phenomena between a structure and a fluid, including nonlinear aspects. It covers all aspects of the phenomena, from the mathematical modeling up to the applications to automotive industrial problems. The aim is to provide readers with a good understanding of the physical phenomena as well as the most recent knowledge of predictive methods.
Optimization of morphing flaps based on fluid structure interaction modeling
DEFF Research Database (Denmark)
Barlas, Athanasios; Akay, Busra
2018-01-01
This article describes the design optimization of morphing trailing edge flaps for wind turbines with ‘smart blades’. A high fidelity Fluid Structure Interaction (FSI) simulation framework is utilized, comprised of 2D Finite Element Analysis (FEA) and Computational Fluid Dynamics (CFD) models....... A coupled aero-structural simulation of a 10% chordwise length morphing trailing edge flap for a 4 MW wind turbine rotor is carried out and response surfaces are produced with respect to the flap internal geometry design parameters for the design conditions. Surrogate model based optimization is applied...
Dynamic soil-structure interaction of monopod and polypod foundations
DEFF Research Database (Denmark)
Andersen, Lars Vabbersgaard
2016-01-01
within the time domain, frequency-independent lumped-parameter models are developed. The paper proposes a decision criterion for determination of which components must be included within a lumped-parameter model in order to account for the structure–soil–structure interaction in an adequate and efficient......The paper concerns the importance of through–soil coupling for structures having foundations with more footings. First, a model for dynamic analysis of polypod footings is established in the frequency domain, employing Green’s function for wave propagation in a layered half-space. To allow analysis...
Seismic soil structure interaction: analysis and centrifuge model studies
International Nuclear Information System (INIS)
Finn, W.D.L.; Ledbetter, R.H.; Beratan, L.L.
1985-01-01
A method for non-linear dynamic effective stress analysis is introduced which is applicable to soil-structure interaction problems. Full interaction including slip between structure and foundation is taken into account and the major factors are included which must be considered when computing dynamic soil response. An experimental investigation was conducted using simulated earthquake tests on centrifuged geotechnical models in order to obtain prototype response data of foundation soils carrying both surface and embedded structures and to validate the dynamic effective stress analysis. Horizontal and vertical accelerations were measured at various points on structures and in the sand foundation. Seismically-induced pore water pressure changes were also measured at various locations in the foundation. Computer plots of the data were obtained while the centrifuge was in flight and representative samples are presented. The results show clearly the pronounced effect that increasing pore water pressures have on dynamic response. It is demonstrated that a coherent picture of dynamic response of soil-structure systems is provided by dynamic effective stress non-linear analysis. Based on preliminary results, it appears that the pore water pressure effects can be predicted
Seismic soil-structure interaction: Analysis and centrifuge model studies
International Nuclear Information System (INIS)
Finn, W.D.L.; Ledbetter, R.H.; Beratan, L.L.
1986-01-01
A method for nonlinear dynamic effective stress analysis applicable to soil-structure interaction problems is introduced. Full interaction including slip between structure and foundation is taken into account and the major factors that must be considered when computing dynamic soil response are included. An experimental investigation using simulated earthquake tests on centrifuged geotechnical models was conducted to obtain prototype response data of foundation soils carrying both surface and embedded structures and to validate the dynamic effective stress analysis. The centrifuge tests were conducted in the Geotechnical Centrifuge at Cambridge University, England. Horizontal and vertical accelerations were measured at various points on structures and in the sand foundation. Seismically induced pore water pressure changes were also measured at various locations in the foundation. Computer plots of the data were obtained while the centrifuge was in flight and representative samples are presented. The results clearly show the pronounced effect of increasing pore water pressures on dynamic response. It is demonstrated that a coherent picture of dynamic response of soil-structure systems is provided by dynamic effective stress nonlinear analysis. On the basis of preliminary results, it appears that the effects of pore water pressure can be predicted. (orig.)
High frequency flow-structural interaction in dense subsonic fluids
Liu, Baw-Lin; Ofarrell, J. M.
1995-01-01
Prediction of the detailed dynamic behavior in rocket propellant feed systems and engines and other such high-energy fluid systems requires precise analysis to assure structural performance. Designs sometimes require placement of bluff bodies in a flow passage. Additionally, there are flexibilities in ducts, liners, and piping systems. A design handbook and interactive data base have been developed for assessing flow/structural interactions to be used as a tool in design and development, to evaluate applicable geometries before problems develop, or to eliminate or minimize problems with existing hardware. This is a compilation of analytical/empirical data and techniques to evaluate detailed dynamic characteristics of both the fluid and structures. These techniques have direct applicability to rocket engine internal flow passages, hot gas drive systems, and vehicle propellant feed systems. Organization of the handbook is by basic geometries for estimating Strouhal numbers, added mass effects, mode shapes for various end constraints, critical onset flow conditions, and possible structural response amplitudes. Emphasis is on dense fluids and high structural loading potential for fatigue at low subsonic flow speeds where high-frequency excitations are possible. Avoidance and corrective measure illustrations are presented together with analytical curve fits for predictions compiled from a comprehensive data base.
Interactive physically-based structural modeling of hydrocarbon systems
International Nuclear Information System (INIS)
Bosson, Mael; Grudinin, Sergei; Bouju, Xavier; Redon, Stephane
2012-01-01
Hydrocarbon systems have been intensively studied via numerical methods, including electronic structure computations, molecular dynamics and Monte Carlo simulations. Typically, these methods require an initial structural model (atomic positions and types, topology, etc.) that may be produced using scripts and/or modeling tools. For many systems, however, these building methods may be ineffective, as the user may have to specify the positions of numerous atoms while maintaining structural plausibility. In this paper, we present an interactive physically-based modeling tool to construct structural models of hydrocarbon systems. As the user edits the geometry of the system, atomic positions are also influenced by the Brenner potential, a well-known bond-order reactive potential. In order to be able to interactively edit systems containing numerous atoms, we introduce a new adaptive simulation algorithm, as well as a novel algorithm to incrementally update the forces and the total potential energy based on the list of updated relative atomic positions. The computational cost of the adaptive simulation algorithm depends on user-defined error thresholds, and our potential update algorithm depends linearly with the number of updated bonds. This allows us to enable efficient physically-based editing, since the computational cost is decoupled from the number of atoms in the system. We show that our approach may be used to effectively build realistic models of hydrocarbon structures that would be difficult or impossible to produce using other tools.
Structure of Microgels with Debye–Hückel Interactions
Hideki Kobayashi; Roland G. Winkler
2014-01-01
The structural properties of model microgel particles are investigated by molecular dynamics simulations applying a coarse-grained model. A microgel is comprised of a regular network of polymers internally connected by tetra-functional cross-links and with dangling ends at its surface. The self-avoiding polymers are modeled as bead-spring linear chains. Electrostatic interactions are taken into account by the Debye–Hückel potential. The microgels exhibit a quite uniform density under bad solv...
Structuring Interactive Correctness Proofs by Formalizing Coding Idioms
Gast, Holger
2012-01-01
This paper examines a novel strategy for developing correctness proofs in interactive software verification for C programs. Rather than proceeding backwards from the generated verification conditions, we start by developing a library of the employed data structures and related coding idioms. The application of that library then leads to correctness proofs that reflect informal arguments about the idioms. We apply this strategy to the low-level memory allocator of the L4 microkernel, a case st...
Human cancer protein-protein interaction network: a structural perspective.
Directory of Open Access Journals (Sweden)
Gozde Kar
2009-12-01
Full Text Available Protein-protein interaction networks provide a global picture of cellular function and biological processes. Some proteins act as hub proteins, highly connected to others, whereas some others have few interactions. The dysfunction of some interactions causes many diseases, including cancer. Proteins interact through their interfaces. Therefore, studying the interface properties of cancer-related proteins will help explain their role in the interaction networks. Similar or overlapping binding sites should be used repeatedly in single interface hub proteins, making them promiscuous. Alternatively, multi-interface hub proteins make use of several distinct binding sites to bind to different partners. We propose a methodology to integrate protein interfaces into cancer interaction networks (ciSPIN, cancer structural protein interface network. The interactions in the human protein interaction network are replaced by interfaces, coming from either known or predicted complexes. We provide a detailed analysis of cancer related human protein-protein interfaces and the topological properties of the cancer network. The results reveal that cancer-related proteins have smaller, more planar, more charged and less hydrophobic binding sites than non-cancer proteins, which may indicate low affinity and high specificity of the cancer-related interactions. We also classified the genes in ciSPIN according to phenotypes. Within phenotypes, for breast cancer, colorectal cancer and leukemia, interface properties were found to be discriminating from non-cancer interfaces with an accuracy of 71%, 67%, 61%, respectively. In addition, cancer-related proteins tend to interact with their partners through distinct interfaces, corresponding mostly to multi-interface hubs, which comprise 56% of cancer-related proteins, and constituting the nodes with higher essentiality in the network (76%. We illustrate the interface related affinity properties of two cancer-related hub
Nonlinear dynamic analysis of framed structures including soil-structure interaction effects
International Nuclear Information System (INIS)
Mahmood, M.N.; Ahmed, S.Y.
2008-01-01
The role of oil-structure interaction on seismic behavior of reinforced concrete structures is investigated in this paper. A finite element approach has been adopted to model the interaction system that consists of the reinforced concrete plane frame, soil deposit and interface which represents the frictional between foundation of the structure and subsoil. The analysis is based on the elasto-plastic behavior of the frame members (beams and columns) that is defined by the ultimate axial force-bending moment interaction curve, while the cap model is adopted to govern the elasto-plastic behavior of the soil material. Mohr-Coulomb failure law is used to determine the initiation of slippage at the interface, while the separation is assumed to determine the initiation of slippage at the interface, while the separation is assumed to occur when the stresses at the interface becomes tension stresses. New-Mark's Predictor-Corrector algorithm is adopted for nonlinear dynamic analysis. The main aim of present work is to evaluate the sensitivity of structures to different behavior of the soil and interface layer when subjected to an earthquake excitation. Predicted results of the dynamic analysis of the interaction system indicate that the soil-structure interaction problem can have beneficial effects on the structural behavior when different soil models (elastic and elasto-plastic) and interface conditions (perfect bond and permitted slip)are considered. (author)
Assessment of soil/structure interaction analysis procedures for nuclear power plant structures
International Nuclear Information System (INIS)
Young, G.A.; Wei, B.C.
1977-01-01
The paper presents an assessment of two state-of-the-art soil/structure interaction analysis procedures that are frequently used to provide seismic analyses of nuclear power plant structures. The advantages of large three-dimensional, elastic, discrete mass models and two-dimensional finite element models are compared. The discrete mass models can provide three-dimensional response capability with economical computer costs but only fair soil/structure interaction representation. The two-dimensional finite element models provide good soil/structure interaction representation, but cannot provide out-of-plane response. Three-dimensional finite element models would provide the most informative and complete analyses. For this model, computer costs would be much greater, but modeling costs would be approximately the same as those required for three-dimensional discrete mass models
Gaseous diffusion flames: simple structures and their interaction
Energy Technology Data Exchange (ETDEWEB)
Cavaliere, A. [Universita degli Studi Federico II, Naples (Italy). Dip. di Ingegneria Chimica; Ragucci, R. [Istituto di Ricerche sulla Combustione C,N.R., Naples (Italy)
2001-07-01
This is a synoptic overview of a selection of works dealing with single diffusive structures, with their mutual interaction in simple flows and their statistical modeling in complex flows. The focus is on reacting conditions pertaining to gaseous diffusion flames, but isothermal structures are also described when they are of some conceptual interest. This paper considers only few representative works for each subject, which are functional in explaining the key characteristics of the diffusive structures. The extension, given to single subjects, is not weighed according to the number of related publications but on the relevance to the basic understanding of the general framework concerning diffusion flames. One-dimensional structures are first discussed. They are ordered according to the number of balance equation terms needed for their description. Two-dimensional (2D) structures are then introduced following an order based on their convolution level. Some pioneering work on three-dimensional structures is further quoted. The temporal evolution of simple structures in quiescent or simple flowing 2D systems is considered. The latter case is exploited to present classification of diffusion-controlled mixing regimes. Modeling characterization approach of turbulent diffusion flames is also described in order to yield a self-sufficient didactic presentation. The approach based on the flame surface density model is specifically discussed because of its potential use in the determination of qualitative and quantitative features of simple diffusion flames. (author)
Binzer, Amrei; Guill, Christian; Rall, Björn C; Brose, Ulrich
2016-01-01
Warming and eutrophication are two of the most important global change stressors for natural ecosystems, but their interaction is poorly understood. We used a dynamic model of complex, size-structured food webs to assess interactive effects on diversity and network structure. We found antagonistic impacts: Warming increases diversity in eutrophic systems and decreases it in oligotrophic systems. These effects interact with the community size structure: Communities of similarly sized species such as parasitoid-host systems are stabilized by warming and destabilized by eutrophication, whereas the diversity of size-structured predator-prey networks decreases strongly with warming, but decreases only weakly with eutrophication. Nonrandom extinction risks for generalists and specialists lead to higher connectance in networks without size structure and lower connectance in size-structured communities. Overall, our results unravel interactive impacts of warming and eutrophication and suggest that size structure may serve as an important proxy for predicting the community sensitivity to these global change stressors. © 2015 John Wiley & Sons Ltd.
Soil-structure interaction in fuel handling building
International Nuclear Information System (INIS)
Elaidi, B.M.; Eissa, M.A.
1998-01-01
This paper presents an accurate three-dimensional seismic soil-structure interaction analysis for large structures. The method is applied to the fuel building in nuclear power plants. The analysis is performed numerically in the frequency domain and the responses are obtained by inverse Fourier transformation. The size of the structure matrices is reduced by transforming the equation of motion to the modal coordinate system. The soil is simulated as a layered media on top of viscoelastic half space. Soil impedance matrices are calculated from the principles of continuum mechanics and account for soil stiffness and energy dissipation. Effects of embedment on the field equations is incorporated through the scattering matrices or by simply scaling the soil impedance. Finite element methods are used to discretize the concrete foundation for the generation of the soil interaction matrices. Decoupling of the sloshing water in the spent fuel pools and the free-standing spent fuel racks is simulated. The input seismic motions are defined by three artificial time history accelerations. These input motions are generated to match the ground design basis response spectra and the target power spectral density function. The methods described in this paper can handle arbitrary foundation layouts, allows for large structural models, and accurately represents the soil impedance. Time history acceleration responses were subsequently used to generate floor response spectra at applicable damping values. (orig.)
Numerical Cerebrospinal System Modeling in Fluid-Structure Interaction.
Garnotel, Simon; Salmon, Stéphanie; Balédent, Olivier
2018-01-01
Cerebrospinal fluid (CSF) stroke volume in the aqueduct is widely used to evaluate CSF dynamics disorders. In a healthy population, aqueduct stroke volume represents around 10% of the spinal stroke volume while intracranial subarachnoid space stroke volume represents 90%. The amplitude of the CSF oscillations through the different compartments of the cerebrospinal system is a function of the geometry and the compliances of each compartment, but we suspect that it could also be impacted be the cardiac cycle frequency. To study this CSF distribution, we have developed a numerical model of the cerebrospinal system taking into account cerebral ventricles, intracranial subarachnoid spaces, spinal canal and brain tissue in fluid-structure interactions. A numerical fluid-structure interaction model is implemented using a finite-element method library to model the cerebrospinal system and its interaction with the brain based on fluid mechanics equations and linear elasticity equations coupled in a monolithic formulation. The model geometry, simplified in a first approach, is designed in accordance with realistic volume ratios of the different compartments: a thin tube is used to mimic the high flow resistance of the aqueduct. CSF velocity and pressure and brain displacements are obtained as simulation results, and CSF flow and stroke volume are calculated from these results. Simulation results show a significant variability of aqueduct stroke volume and intracranial subarachnoid space stroke volume in the physiological range of cardiac frequencies. Fluid-structure interactions are numerous in the cerebrospinal system and difficult to understand in the rigid skull. The presented model highlights significant variations of stroke volumes under cardiac frequency variations only.
Dark matter self-interactions and small scale structure
Tulin, Sean; Yu, Hai-Bo
2018-02-01
We review theories of dark matter (DM) beyond the collisionless paradigm, known as self-interacting dark matter (SIDM), and their observable implications for astrophysical structure in the Universe. Self-interactions are motivated, in part, due to the potential to explain long-standing (and more recent) small scale structure observations that are in tension with collisionless cold DM (CDM) predictions. Simple particle physics models for SIDM can provide a universal explanation for these observations across a wide range of mass scales spanning dwarf galaxies, low and high surface brightness spiral galaxies, and clusters of galaxies. At the same time, SIDM leaves intact the success of ΛCDM cosmology on large scales. This report covers the following topics: (1) small scale structure issues, including the core-cusp problem, the diversity problem for rotation curves, the missing satellites problem, and the too-big-to-fail problem, as well as recent progress in hydrodynamical simulations of galaxy formation; (2) N-body simulations for SIDM, including implications for density profiles, halo shapes, substructure, and the interplay between baryons and self-interactions; (3) semi-analytic Jeans-based methods that provide a complementary approach for connecting particle models with observations; (4) merging systems, such as cluster mergers (e.g., the Bullet Cluster) and minor infalls, along with recent simulation results for mergers; (5) particle physics models, including light mediator models and composite DM models; and (6) complementary probes for SIDM, including indirect and direct detection experiments, particle collider searches, and cosmological observations. We provide a summary and critical look for all current constraints on DM self-interactions and an outline for future directions.
Structured Light-Matter Interactions Enabled By Novel Photonic Materials
Energy Technology Data Exchange (ETDEWEB)
Litchinitser, Natalia [Univ. at Buffalo, NY (United States); Feng, Liang [Univ. at Buffalo, NY (United States)
2017-05-02
The synergy of complex materials and complex light is expected to add a new dimension to the science of light and its applications [1]. The goal of this program is to investigate novel phenomena emerging at the interface of these two branches of modern optics. While metamaterials research was largely focused on relatively “simple” linearly or circularly polarized light propagation in “complex” nanostructured, carefully designed materials with properties not found in nature, many singular optics studies addressed “complex” structured light transmission in “simple” homogeneous, isotropic, nondispersive transparent media, where both spin and orbital angular momentum are independently conserved. However, if both light and medium are complex so that structured light interacts with a metamaterial whose optical materials properties can be designed at will, the spin or angular momentum can change, which leads to spin-orbit interaction and many novel optical phenomena that will be studied in the proposed project. Indeed, metamaterials enable unprecedented control over light propagation, opening new avenues for using spin and quantum optical phenomena, and design flexibility facilitating new linear and nonlinear optical properties and functionalities, including negative index of refraction, magnetism at optical frequencies, giant optical activity, subwavelength imaging, cloaking, dispersion engineering, and unique phase-matching conditions for nonlinear optical interactions. In this research program we focused on structured light-matter interactions in complex media with three particularly remarkable properties that were enabled only with the emergence of metamaterials: extreme anisotropy, extreme material parameters, and magneto-electric coupling–bi-anisotropy and chirality.
Isotope labeling for NMR studies of macromolecular structure and interactions
International Nuclear Information System (INIS)
Wright, P.E.
1994-01-01
Implementation of biosynthetic methods for uniform or specific isotope labeling of proteins, coupled with the recent development of powerful heteronuclear multidimensional NMR methods, has led to a dramatic increase in the size and complexity of macromolecular systems that are now amenable to NMR structural analysis. In recent years, a new technology has emerged that combines uniform 13 C, 15 N labeling with heteronuclear multidimensional NMR methods to allow NMR structural studies of systems approaching 25 to 30 kDa in molecular weight. In addition, with the introduction of specific 13 C and 15 N labels into ligands, meaningful NMR studies of complexes of even higher molecular weight have become feasible. These advances usher in a new era in which the earlier, rather stringent molecular weight limitations have been greatly surpassed and NMR can begin to address many central biological problems that involve macromolecular structure, dynamics, and interactions
Isotope labeling for NMR studies of macromolecular structure and interactions
Energy Technology Data Exchange (ETDEWEB)
Wright, P.E. [Scripps Research Institute, La Jolla, CA (United States)
1994-12-01
Implementation of biosynthetic methods for uniform or specific isotope labeling of proteins, coupled with the recent development of powerful heteronuclear multidimensional NMR methods, has led to a dramatic increase in the size and complexity of macromolecular systems that are now amenable to NMR structural analysis. In recent years, a new technology has emerged that combines uniform {sup 13}C, {sup 15}N labeling with heteronuclear multidimensional NMR methods to allow NMR structural studies of systems approaching 25 to 30 kDa in molecular weight. In addition, with the introduction of specific {sup 13}C and {sup 15}N labels into ligands, meaningful NMR studies of complexes of even higher molecular weight have become feasible. These advances usher in a new era in which the earlier, rather stringent molecular weight limitations have been greatly surpassed and NMR can begin to address many central biological problems that involve macromolecular structure, dynamics, and interactions.
Nonlinear seismic soil-structure interaction analysis of nuclear power plant structures
International Nuclear Information System (INIS)
Khanna, J.K.; Setlur, A.V.; Pathak, D.V.
1977-01-01
The heterogeneous and nonlinear soil medium and the detailed three-dimensional structure are synthesized to determine the seismic response to soil-structure systems. The approach is particularly attractive in a design office environment since it: a) leads to interactive motion at the soil-structure interface; b) uses existing public domain programs such as SAPIV, LUSH and FLUSH with marginal modifications; and c) meets current regulatory requirements for soil-structure interaction analysis. Past methods differ from each other depending on the approach adopted for soil and structure representations and procedures for solving the governing differential equations. Advantages and limitations of these methods are reviewed. In the current approach, the three-dimensional structure is represented by the dynamic characteristics of its fixed base condition. This representation is ideal when structures are designed to be within elastic range. An important criterion is the design of the nuclear power plant structures. Model damping coefficients are varied to reflect the damping properties of different structural component materials. The detailed structural model is systematically reduced to reflect important dynamic behavior with simultaneous storing of intermediate information for retrieval of detailed structural response. Validity of the approach has been established with simple numerical experiments. (Auth.)
Analytical study on model tests of soil-structure interaction
International Nuclear Information System (INIS)
Odajima, M.; Suzuki, S.; Akino, K.
1987-01-01
Since nuclear power plant (NPP) structures are stiff, heavy and partly-embedded, the behavior of those structures during an earthquake depends on the vibrational characteristics of not only the structure but also the soil. Accordingly, seismic response analyses considering the effects of soil-structure interaction (SSI) are extremely important for seismic design of NPP structures. Many studies have been conducted on analytical techniques concerning SSI and various analytical models and approaches have been proposed. Based on the studies, SSI analytical codes (computer programs) for NPP structures have been improved at JINS (Japan Institute of Nuclear Safety), one of the departments of NUPEC (Nuclear Power Engineering Test Center) in Japan. These codes are soil-spring lumped-mass code (SANLUM), finite element code (SANSSI), thin layered element code (SANSOL). In proceeding with the improvement of the analytical codes, in-situ large-scale forced vibration SSI tests were performed using models simulating light water reactor buildings, and simulation analyses were performed to verify the codes. This paper presents an analytical study to demonstrate the usefulness of the codes
On the interaction of Rayleigh surface waves with structures
International Nuclear Information System (INIS)
Simpson, I.C.
1976-12-01
A two-dimensional soil-structure interaction analysis is carried out for transient Rayleigh surface waves that are incident on a structure. The structure is modelled by a three-degree of freedom rigid basemat to which is attached a flexible superstructure, modelled by a single mass-spring system. The structural responses to a given Rayleigh wave train are compared with those that would have been obtained if the free-field acceleration-time history had been applied as a normally incident body wave. The results clearly exhibit the 'frequency filtering' effects of the rigid basemat on the incident Rayleigh waves. It is shown that, if seismic excitation of a structure is, in fact, due to Rayleigh surface waves, then an analysis assuming normally incident body waves can considerably over-estimate structural response, both at basemat level for horizontal and vertical oscillations of the superstructure. However, in the examples considered here, relatively large rocking effects were induced by the Rayleigh waves, thus giving maximum horizontal accelerations in the superstructure that were of comparable magnitude for Rayleigh and normally incident body waves. (author)
Site response - a critical problem in soil-structure interaction analyses for embedded structures
International Nuclear Information System (INIS)
Seed, H.B.; Lysmer, J.
1986-01-01
Soil-structure interaction analyses for embedded structures must necessarily be based on a knowledge of the manner in which the soil would behave in the absence of any structure - that is on a knowledge and understanding of the spatial distribution of motions in the ground within the depth of embedment of the structure. The nature of these spatial variations is discussed and illustrated by examples of recorded motions. It is shown that both the amplitude of peak acceleration and the form of the acceleration response spectrum for earthquake motions will necessarily vary with depth and failure to take these variations into account may introduce an unwarranted degree of conservatism into the soil-structure interaction analysis procedure
Energy Technology Data Exchange (ETDEWEB)
Luco, J E; Wong, H L [Structural and Earthquake Engineering Consultants, Inc., Sierra Madre, CA (United States); Chang, C -Y; Power, M S; Idriss, I M [Woodward-Clyde Consultants, Walnut Creek, CA (United States)
1986-08-01
This report presents the results of part of a two-task study on the engineering characterization of earthquake ground motion for nuclear power plant design. The overall objective of this research program sponsored by the U.S. Nuclear Regulatory Commission (USNRC) is to develop recommendations for methods for selecting design response spectra or acceleration time histories to be used to characterize motion at the foundation level of nuclear power plants. Task I of the study, which is presented in Vol. 1 of NUREG/CR-3805, developed a basis for selecting design response spectra taking into account the characteristics of free-field ground motion found to be significant in causing structural damage. Task II incorporates additional considerations of effects of spatial variations of ground motions and soil-structure interaction on foundation motions and structural response. The results of Task II are presented in Vols. 2 through of NUREG/CR-3805 as follows: Vol. 2 effects of ground motion characteristics on structural response considering localized structural nonlinearities and soil-structure interaction effects; Vol. 3 observational data on spatial variations of earthquake ground motions; Vol. 4 soil-structure interaction effects on structural response; and Vol. 5, summary based on Tasks I and II studies. This report presents the results of the Vol. 4 studies.
Characterising non-covalent interactions with the Cambridge Structural Database.
Lommerse, J P; Taylor, R
1997-02-01
This review describes how the CSD can be used to study non-covalent interactions. Several different types of information may be obtained. First, the relative frequencies of various interactions can be studied; for example, we have shown that the terminal oxygen atoms of phosphate groups accept hydrogen bonds far more often than the linkage oxygens. Secondly, information can be obtained about the geometries of nonbonded contacts; for example, hydrogen bonds to P-O groups rarely form along the extension of the P-O bond, whereas short contacts between oxygen and carbon-bound iodine show a strong preference for linear C-I ... O angles. Thirdly, the CSD can be searched for novel interactions which may be exploited in inhibitor design; for example, the I ... O contacts just mentioned, and N-H ... pi hydrogen bonds. Finally, the CSD can suggest synthetic targets for medicinal chemistry; for example, molecules containing delocalised electron deficient groups such as trimethylammonium, pyridinium, thaizolium and dinitrophenyl have a good chance of binding to an active-site tryptophan. Although the CSD contains small-molecule crystal structures, not protein-ligand complexes, there is considerable evidence that the contacts seen in the two types of structures are similar. We have illustrated this a number of times in the present review and additional evidence has been given previously by Klebe. The major advantages of the CSD are its size, diversity and experimental accuracy. For these reasons, it is a useful tool for modellers engaged in rational inhibitor design.
Analysis of fluid-structure interaction and structural respones of Chernobyl-4 reactor
International Nuclear Information System (INIS)
Wang, C.Y.; Pizzica, P.A.; Gvildys, J.; Spencer, B.W.
1989-01-01
The accident at Chernobyl-4 occurred during the running of a test to determine the turbogenerator's ability to provide in-house emergency power after shutting off its steam supply. The accident was the result of a large, destructive power excursion. This paper presents an analysis of the energetic events associated with the fuel failures, fuel-coolant thermal interactions, and the fluid-structure interaction
Brocchini, M
2006-01-01
This book contains a collection of 11 research and review papers devoted to the topic of fluid-structure interaction.The subject matter is divided into chapters covering a wide spectrum of recognized areas of research, such as: wall bounded turbulence; quasi 2-D turbulence; canopy turbulence; large eddy simulation; lake hydrodynamics; hydraulic hysteresis; liquid impacts; flow induced vibrations; sloshing flows; transient pipe flow and air entrainment in dropshaft.The purpose of each chapter is to summarize the main results obtained by the individual research unit through a year-long activity on a specific issue of the above list. The main feature of the book is to bring state of the art research on fluid structure interaction to the attention of the broad international community.This book is primarily aimed at fluid mechanics scientists, but it will also be of value to postgraduate students and practitioners in the field of fluid structure interaction.
Pulsed Laser Interactions with Silicon Nano structures in Emitter Formation
International Nuclear Information System (INIS)
Huat, V.L.C.; Leong, C.S.; Kamaruzzaman Sopian, Saleem Hussain Zaidi
2015-01-01
Silicon wafer thinning is now approaching fundamental limits for wafer thickness owing to thermal expansion mismatch between Al and Si, reduced yields in wet-chemical processing as a result of fragility, and reduced optical absorption. An alternate manufacturing approach is needed to eliminate current manufacturing issues. In recent years, pulsed lasers have become readily available and costs have been significantly reduced. Pulsed laser interactions with silicon, in terms of micromachining, diffusions, and edge isolation, are well known, and have become industrial manufacturing tools. In this paper, pulsed laser interactions with silicon nano structures were identified as the most desirable solution for the fundamental limitations discussed above. Silicon nano structures have the capability for extremely high absorption that significantly reduces requirements for laser power, as well as thermal shock to the thinner wafer. Laser-assisted crystallization, in the presence of doping materials, leads to nano structure profiles that are highly desirable for sunlight absorption. The objective of this paper is the replacement of high temperature POCl_3 diffusion by laser-assisted phosphorus layers. With these improvements, complete low-temperature processing of thinner wafers was achievable with 3.7 % efficiency. Two-dimensional laser scanning was proved to be able to form uniformly annealed surfaces with higher fill factor and open-circuit voltage. (author)
Embedment Effect test on soil-structure interaction
International Nuclear Information System (INIS)
Nasuda, Toshiaki; Akino, Kinji; Izumi, Masanori.
1991-01-01
A project consisting of laboratory test and field test has been conducted to clarify the embedment effect on soil-structure interaction. The objective of this project is to obtain the data for improving and preparing seismic analysis codes regarding the behavior of embedded reactor buildings during earthquakes. This project was planned to study the effect of soil-structure interaction using small size soil-structure models as well as the large scale models. The project was started in April, 1986, and is scheduled to end in March, 1994. The laboratory test models and field test models, and the measurement with accelerometers and others are described. As the interim results, the natural frequency and damping factor increased, and the amplitude decreased by the embedment of the test models. Some earthquakes were recorded in a soft rock site. The epicenters of the earthquakes occurred in 1989 are shown. The field tests were carried out in three sites. Two sites were used for the dynamic test with four test models having 8 m x 8 m plane size and 10 m height. One site was used for the static test with one concrete block as a specimen. Two models represent BWR type reactor buildings, and two models represent PWR type buildings. (K.I.)
Control-structure interaction in precision pointing servo loops
Spanos, John T.
1989-01-01
The control-structure interaction problem is addressed via stability analysis of a generic linear servo loop model. With the plant described by the rigid body mode and a single elastic mode, structural flexibility is categorized into one of three types: (1) appendage, (2) in-the-loop minimum phase, and (3) in-the-loop nonminimum phase. Closing the loop with proportional-derivative (PD) control action and introducing sensor roll-off dynamics in the feedback path, stability conditions are obtained. Trade studies are conducted with modal frequency, modal participation, modal damping, loop bandwidth, and sensor bandwidth treated as free parameters. Results indicate that appendage modes are most likely to produce instability if they are near the sensor rolloff, whereas in-the-loop modes are most dangerous near the loop bandwidth. The main goal of this paper is to provide a fundamental understanding of the control-structure interaction problem so that it may benefit the design of complex spacecraft and pointing system servo loops. In this framework, the JPL Pathfinder gimbal pointer is considered as an example.
Seismic response analysis with liquid-structure interaction
International Nuclear Information System (INIS)
Thomas, R.G.; Harrop, L.P.
1983-06-01
A linear transient finite element stress analysis of a water filled tank has been carried out using the proprietary computer code ANSYS. The containment structure was represented as rigidly fixed to ground. The flexibility of the tank wall was modelled together with the hydrostatic and hydrodynamic effects of the water contents and attached concentrated masses. The foundations were considered to be laid in solid rock, and no soil-structure interaction effects were included. The seismic input was a ground response spectrum conservatively representing both the Temblor and Parkfield modified time history records. It was found that the response of the structure was greatest at the front end (furthest from the point at which the tank is connected to a rigid internal structure), and that this was dominated by the fundamental mode. Higher modes are important at the back end. Buckling at the front end of the tank has been identified as a potential failure mechanism, and attention has also been called to the tensile capacity of the wall to base junction in this region. The requirement for a proper criterion against which to assess the margin against plastic collapse in a safe shutdown analysis has been noted. In certain regions the structure does not shake-down under the repeated reversed cyclic loading, and the need for an assessment of the implications of this for fatigue resistance has been indicated. (author)
Directory of Open Access Journals (Sweden)
Sanaz Mahmoudpour
2011-01-01
Full Text Available Analysis and design of structures subjected to arbitrary dynamic loadings especially earthquakes have been studied during past decades. In practice, the effects of soil-structure interaction on the dynamic response of structures are usually neglected. In this study, the effect of soil-structure interaction on the dynamic response of structures has been examined. The substructure method using dynamic stiffness of soil is used to analyze soil-structure system. A coupled model based on finite element method and scaled boundary finite element method is applied. Finite element method is used to analyze the structure, and scaled boundary finite element method is applied in the analysis of unbounded soil region. Due to analytical solution in the radial direction, the radiation condition is satisfied exactly. The material behavior of soil and structure is assumed to be linear. The soil region is considered as a homogeneous half-space. The analysis is performed in time domain. A computer program is prepared to analyze the soil-structure system. Comparing the results with those in literature shows the exactness and competency of the proposed method.
Soil structure interactions of eastern U.S. type earthquakes
International Nuclear Information System (INIS)
Chang Chen; Serhan, S.
1991-01-01
Two types of earthquakes have occurred in the eastern US in the past. One of them was the infrequent major events such as the 1811-1812 New Madrid Earthquakes, or the 1886 Charleston Earthquake. The other type was the frequent shallow earthquakes with high frequency, short duration and high accelerations. Two eastern US nuclear power plants, V.C Summer and Perry, went through extensive licensing effort to obtain fuel load licenses after this type of earthquake was recorded on sites and exceeded the design bases beyond 10 hertz region. This paper discusses the soil-structure interactions of the latter type of earthquakes
Soil structure interaction calculations: a comparison of methods
International Nuclear Information System (INIS)
Wight, L.; Zaslawsky, M.
1976-01-01
Two approaches for calculating soil structure interaction (SSI) are compared: finite element and lumped mass. Results indicate that the calculations with the lumped mass method are generally conservative compared to those obtained by the finite element method. They also suggest that a closer agreement between the two sets of calculations is possible, depending on the use of frequency-dependent soil springs and dashpots in the lumped mass calculations. There is a total lack of suitable guidelines for implementing the lumped mass method of calculating SSI, which leads to the conclusion that the finite element method is generally superior for calculative purposes
Soil structure interaction calculations: a comparison of methods
Energy Technology Data Exchange (ETDEWEB)
Wight, L.; Zaslawsky, M.
1976-07-22
Two approaches for calculating soil structure interaction (SSI) are compared: finite element and lumped mass. Results indicate that the calculations with the lumped mass method are generally conservative compared to those obtained by the finite element method. They also suggest that a closer agreement between the two sets of calculations is possible, depending on the use of frequency-dependent soil springs and dashpots in the lumped mass calculations. There is a total lack of suitable guidelines for implementing the lumped mass method of calculating SSI, which leads to the conclusion that the finite element method is generally superior for calculative purposes.
Decorated Ising models with competing interactions and modulated structures
International Nuclear Information System (INIS)
Tragtenberg, M.H.R.; Yokoi, C.S.O.; Salinas, S.R.A.
1988-01-01
The phase diagrams of a variety of decorated Ising lattices are calculated. The competing interactions among the decorating spins may induce different types of modulated orderings. In particular, the effect of an applied field on the phase diagram of the two-dimensional mock ANNNI model is considered, where only the original horizontal bonds on a square lattice are decorated. Some Bravais lattices and Cayley trees where all bonds are equally decorated are then studied. The Bravais lattices display a few stable modulated structures. The Cayley trees, on the other hand, display a large number of modulated phases, which increases with the lattice coordination number. (authors) [pt
Soil structure interaction in offshore wind turbine collisions
DEFF Research Database (Denmark)
Samsonovs, Artjoms; Giuliani, Luisa; Zania, Varvara
2014-01-01
Vessel impact is one of the load cases which should be accounted for in the design of an offshore wind turbine (OWT) according to design codes, but little guidance or information is given on the employed methodology. This study focuses on the evaluation of the distress induced in a wind turbine...... after a ship collision, thus providing an insight on the consequences of a collision event and on the main aspects to be considered when designing for this load case. In particular, the role of the foundation soil properties (site conditions) on the response of the structural system is investigated....... Dynamic finite element analyses have been performed taking into account the geometric and material nonlinearity of the tower, and the effects of soil structure interaction (SSI) have been studied in two representative collision scenarios of a service vessel with the turbine: a moderate energy impact...
Soil-Framed Structure Interaction Analysis - A New Interface Element
Directory of Open Access Journals (Sweden)
M. Dalili Shoaei
Full Text Available AbstractInterfacial behavior between soil and shallow foundation has been found so influential to combined soil-footing performance and redistribution of forces in the superstructure. This study introduces a new thin-layer interface element formulated within the context of finite element method to idealize interfacial behavior of soil-framed structure interaction with new combination of degrees of freedom at top and bottom sides of the interface element, compatible with both isoparametric beam and quadrilateral element. This research also tends to conduct a parametric study on respective parameters of the new joint element. Presence of interface element showed considerable changes in the performance of the framed structure under quasi-static loading.
VPAC receptors: structure, molecular pharmacology and interaction with accessory proteins.
Couvineau, Alain; Laburthe, Marc
2012-05-01
The vasoactive intestinal peptide (VIP) is a neuropeptide with wide distribution in both central and peripheral nervous systems, where it plays important regulatory role in many physiological processes. VIP displays a large biological functions including regulation of exocrine secretions, hormone release, fetal development, immune responses, etc. VIP appears to exert beneficial effect in neuro-degenerative and inflammatory diseases. The mechanism of action of VIP implicates two subtypes of receptors (VPAC1 and VPAC2), which are members of class B receptors belonging to the super-family of GPCR. This article reviews the current knowledge regarding the structure and molecular pharmacology of VPAC receptors. The structure-function relationship of VPAC1 receptor has been extensively studied, allowing to understand the molecular basis for receptor affinity, specificity, desensitization and coupling to adenylyl cyclase. Those studies have clearly demonstrated the crucial role of the N-terminal ectodomain (N-ted) of VPAC1 receptor in VIP recognition. By using different approaches including directed mutagenesis, photoaffinity labelling, NMR, molecular modelling and molecular dynamic simulation, it has been shown that the VIP molecule interacts with the N-ted of VPAC1 receptor, which is itself structured as a 'Sushi' domain. VPAC1 receptor also interacts with a few accessory proteins that play a role in cell signalling of receptors. Recent advances in the structural characterization of VPAC receptor and more generally of class B GPCRs will lead to the design of new molecules, which could have considerable interest for the treatment of inflammatory and neuro-degenerative diseases. © 2011 The Authors. British Journal of Pharmacology © 2011 The British Pharmacological Society.
Influence of seismic isolation systems and soil-structure interaction on the response of structures
Directory of Open Access Journals (Sweden)
Samah Hasrouri
2018-01-01
Full Text Available The reduction of cyclic loading triggering major damage in urban areas is a major challenge in earthquake engineering. The processes of structural control especially control structures for passive isolation systems and earthquake sinks of energy, which consists in superimposing on the structure a device which modifies the rigidity or the damping of the structural system without the demand for an external energy source and without introducing energy for its operation, these devices with taking account the effect of soilstructure interaction are currently regarded as effective solutions to these problem by reducing the level of acceleration imposed on the structure and consequently forces shear and the relative displacements in the superstructure. This reduction of shear forces and displacements will limit the structural damage.
Fluid-structure interactions in PWR vessels during blowdown
International Nuclear Information System (INIS)
Schumann, U.; Enderle, G.; Katz, F.; Ludwig, A.; Moesinger, H.; Schlechtendahl, E.G.
1979-01-01
For analysis of blowdown loadings and dynamic response of PWR vessel internals several computer codes have been developed at Karlsruhe. The goal is to provide advanced codes which permit a 'best estimate' analysis of the deformations and stresses of the internal structures, in particular the core barrel, such that the safety margins can be evaluated. The stresses reach their maxima during the initial subcooled period of the blowdown in which two-phase phenomena are important in the blowdown pipe only. In this period, the computed results with and without fluid-structural interactions show that the coupling between the water in the downcomer and the rather thin elastic core barrel is of dominant importance. Without coupling the core barrel oscillates with much higher frequencies than with coupling. The amplitudes and stresses are about twice as large initially. Later, the decoupled analysis can result in a meaningless overestimation of the structural response. By comparison of computations for incompressible and for compressible fluid with and without coupling we have found that a correct treatment of the fluid-structure coupling is more important than the description of pressure waves. (orig.)
A symmetric positive definite formulation for monolithic fluid structure interaction
Robinson-Mosher, Avi; Schroeder, Craig; Fedkiw, Ronald
2011-01-01
In this paper we consider a strongly coupled (monolithic) fluid structure interaction framework for incompressible flow, as opposed to a loosely coupled (partitioned) method. This requires solving a single linear system that combines the unknown velocities of the structure with the unknown pressures of the fluid. In our previous work, we were able to obtain a symmetric formulation of this coupled system; however, it was also indefinite, making it more difficult to solve. In fact in practice there have been cases where we have been unable to invert the system. In this paper we take a novel approach that consists of factoring the damping matrix of deformable structures and show that this can be used to obtain a symmetric positive definite system, at least to the extent that the uncoupled systems were symmetric positive definite. We use a traditional MAC grid discretization of the fluid and a fully Lagrangian discretization of the structures for the sake of exposition, noting that our procedure can be generalized to other scenarios. For the special case of rigid bodies, where there are no internal damping forces, we exactly recover the system of Batty et al. (2007) [4]. © 2010 Elsevier Inc.
Fluid-structure interactions of photo-responsive polymer cantilevers
Bin, Jonghoon; Oates, William S.; Yousuff Hussaini, M.
2013-02-01
A new class of photomechanical liquid crystal networks (LCNs) has emerged, which generate large bending deformation and fast response times that scale with the resonance of the polymer films. Here, a numerical study is presented that describes the photomechanical structural dynamic behavior of an LCN in a fluid medium; however, the methodology is also applicable to fluid-structure interactions of a broader range of adaptive structures. Here, we simulate the oscillation of photomechanical cantilevers excited by light while simultaneously modeling the effect of the surrounding fluid at different ambient pressures. The photoactuated LCN is modeled as an elastic thin cantilever plate, and gradients in photostrain from the external light are computed from the assumptions of light absorption and photoisomerization through the film thickness. Numerical approximations of the equations governing the plate are based on cubic B-spline shape functions and a second order implicit Newmark central scheme for time integration. For the fluid, three dimensional unsteady incompressible Navier-Stokes equations are solved using the arbitrary Lagrangian-Eulerian (ALE) method, which employs a structured body-fitted curvilinear coordinate system where the solid-fluid interface is a mesh line of the system, and the complicated interface boundary conditions are accommodated in a conventional finite-volume formulation. Numerical examples are given which provide new insight into material behavior in a fluid medium as a function of ambient pressure.
Magnetic monopole interactions: shell structure of meson and baryon states
International Nuclear Information System (INIS)
Akers, D.
1986-01-01
It is suggested that a low-mass magnetic monopole of Dirac charge g = (137/2)e may be interacting with a c-quark's magnetic dipole moment to produce Zeeman splitting of meson states. The mass M 0 = 2397 MeV of the monopole is in contrast to the 10 16 -GeV monopoles of grand unification theories (GUT). It is shown that shell structure of energy E/sub n/ = M 0 + 1/4nM 0 ... exists for meson states. The presence of symmetric meson states leads to the identification of the shell structure. The possible existence of the 2397-MeV magnetic monopole is shown to quantize quark masses in agreement with calculations of quantum chromodynamics (QCD). From the shell structure of meson states, the existence of two new mesons is predicted: eta(1814 +/- 50 MeV) with I/sup G/(J/sup PC/) = 0 + (0 -+ ) and eta/sub c/ (3907 +/- 100 MeV) with J/sup PC/ = 0 -+ . The presence of shell structure for baryon states is shown
A symmetric positive definite formulation for monolithic fluid structure interaction
Robinson-Mosher, Avi
2011-02-01
In this paper we consider a strongly coupled (monolithic) fluid structure interaction framework for incompressible flow, as opposed to a loosely coupled (partitioned) method. This requires solving a single linear system that combines the unknown velocities of the structure with the unknown pressures of the fluid. In our previous work, we were able to obtain a symmetric formulation of this coupled system; however, it was also indefinite, making it more difficult to solve. In fact in practice there have been cases where we have been unable to invert the system. In this paper we take a novel approach that consists of factoring the damping matrix of deformable structures and show that this can be used to obtain a symmetric positive definite system, at least to the extent that the uncoupled systems were symmetric positive definite. We use a traditional MAC grid discretization of the fluid and a fully Lagrangian discretization of the structures for the sake of exposition, noting that our procedure can be generalized to other scenarios. For the special case of rigid bodies, where there are no internal damping forces, we exactly recover the system of Batty et al. (2007) [4]. © 2010 Elsevier Inc.
Impact of soil-structure interaction on the probabilistic frequency variation of concrete structures
International Nuclear Information System (INIS)
Hadjian, A.H.; Hamilton, C.W.
1975-01-01
Earthquake response of equipment in nuclear power plants is characterized by floor response spectra. Since these spectra peak at the natural frequencies of the structure, it is important, both from safety and cost standpoints, to determine the degree of the expected variability of the calculated structural frequencies. A previous work is extended on the variability of the natural frequencies of structures due to the variations of concrete properties and a rigorous approach is presented to evaluate frequency variations based on the probability distributions of both the structural and soil parameters and jointly determine the distributions of the natural frequencies. It is assumed that the soil-structure interaction coefficients are normally distributed. With the proper choice of coordinates, the simultaneous random variations of both the structural properties and the interaction coefficients can be incorporated in the eigenvalue problem. The key methodology problem is to obtain the probability distribution of eigenvalues of matrices with random variable elements. Since no analytic relation exists between the eigenvalues and the elements, a numerical procedure had to be designed. It was found that the desired accuracy can be best achieved by splitting the joint variation into two parts: the marginal distribution of soil variations and the conditional distribution of structural variations at specific soil fractiles. Then after calculating the actual eigenvalues at judiciously selected paired values of soil and structure parameters, this information is recombined to obtain the desired cumulative distribution of natural frequencies
Simulations of structure formation in interacting dark energy cosmologies
International Nuclear Information System (INIS)
Baldi, M.
2009-01-01
The evidence in favor of a dark energy component dominating the Universe, and driving its presently accelerated expansion, has progressively grown during the last decade of cosmological observations. If this dark energy is given by a dynamic scalar field, it may also have a direct interaction with other matter fields in the Universe, in particular with cold dark matter. Such interaction would imprint new features on the cosmological background evolution as well as on the growth of cosmic structure, like an additional long-range fifth-force between massive particles, or a variation in time of the dark matter particle mass. We present here the implementation of these new physical effects in the N-body code GADGET-2, and we discuss the outcomes of a series of high-resolution N-body simulations for a selected family of interacting dark energy models. We interestingly find, in contrast with previous claims, that the inner overdensity of dark matter halos decreases in these models with respect to ΛCDM, and consistently halo concentrations show a progressive reduction for increasing couplings. Furthermore, the coupling induces a bias in the overdensities of cold dark matter and baryons that determines a decrease of the halo baryon fraction below its cosmological value. These results go in the direction of alleviating tensions between astrophysical observations and the predictions of the ΛCDM model on small scales, thereby opening new room for coupled dark energy models as an alternative to the cosmological constant.
Heparan sulfate proteoglycans: structure, protein interactions and cell signaling
Directory of Open Access Journals (Sweden)
Juliana L. Dreyfuss
2009-09-01
Full Text Available Heparan sulfate proteoglycans are ubiquitously found at the cell surface and extracellular matrix in all the animal species. This review will focus on the structural characteristics of the heparan sulfate proteoglycans related to protein interactions leading to cell signaling. The heparan sulfate chains due to their vast structural diversity are able to bind and interact with a wide variety of proteins, such as growth factors, chemokines, morphogens, extracellular matrix components, enzymes, among others. There is a specificity directing the interactions of heparan sulfates and target proteins, regarding both the fine structure of the polysaccharide chain as well precise protein motifs. Heparan sulfates play a role in cellular signaling either as receptor or co-receptor for different ligands, and the activation of downstream pathways is related to phosphorylation of different cytosolic proteins either directly or involving cytoskeleton interactions leading to gene regulation. The role of the heparan sulfate proteoglycans in cellular signaling and endocytic uptake pathways is also discussed.Proteoglicanos de heparam sulfato são encontrados tanto superfície celular quanto na matriz extracelular em todas as espécies animais. Esta revisão tem enfoque nas características estruturais dos proteoglicanos de heparam sulfato e nas interações destes proteoglicanos com proteínas que levam à sinalização celular. As cadeias de heparam sulfato, devido a sua variedade estrutural, são capazes de se ligar e interagir com ampla gama de proteínas, como fatores de crescimento, quimiocinas, morfógenos, componentes da matriz extracelular, enzimas, entreoutros. Existe uma especificidade estrutural que direciona as interações dos heparam sulfatos e proteínas alvo. Esta especificidade está relacionada com a estrutura da cadeia do polissacarídeo e os motivos conservados da cadeia polipeptídica das proteínas envolvidas nesta interação. Os heparam
Numerically stable fluid–structure interactions between compressible flow and solid structures
Grétarsson, Jón Tómas
2011-04-01
We propose a novel method to implicitly two-way couple Eulerian compressible flow to volumetric Lagrangian solids. The method works for both deformable and rigid solids and for arbitrary equations of state. The method exploits the formulation of [11] which solves compressible fluid in a semi-implicit manner, solving for the advection part explicitly and then correcting the intermediate state to time tn+1 using an implicit pressure, obtained by solving a modified Poisson system. Similar to previous fluid-structure interaction methods, we apply pressure forces to the solid and enforce a velocity boundary condition on the fluid in order to satisfy a no-slip constraint. Unlike previous methods, however, we apply these coupled interactions implicitly by adding the constraint to the pressure system and combining it with any implicit solid forces in order to obtain a strongly coupled, symmetric indefinite system (similar to [17], which only handles incompressible flow). We also show that, under a few reasonable assumptions, this system can be made symmetric positive-definite by following the methodology of [16]. Because our method handles the fluid-structure interactions implicitly, we avoid introducing any new time step restrictions and obtain stable results even for high density-to-mass ratios, where explicit methods struggle or fail. We exactly conserve momentum and kinetic energy (thermal fluid-structure interactions are not considered) at the fluid-structure interface, and hence naturally handle highly non-linear phenomenon such as shocks, contacts and rarefactions. © 2011 Elsevier Inc.
Ditommaso, Rocco; Auletta, Gianluca; Iacovino, Chiara; Nigro, Antonella; Carlo Ponzo, Felice
2017-04-01
In this paper, several nonlinear numerical models of reinforced concrete framed structures have been defined in order to evaluate the effects of non-structural elements and soil-structure interaction on the elastic dynamic behaviour of buildings. In the last few years, many and various studies have highlighted the significant effects derived from the interaction between structural and non-structural components on the main dynamic characteristics of a building. Usually, structural and non-structural elements act together, adding both masses and stiffness. The presence of infill panels is generally neglected in the design process of structural elements, although these elements can significantly increase the lateral stiffness of a structure leading to a modification in the dynamic properties. Particularly, at the Damage Limit State (where an elastic behaviour is expected), soil-structure interaction effects and non-structural elements may further affect the elastic natural period of buildings, changing the spectral accelerations compared with those provided by seismic codes in case of static analyses. In this work, a parametric study has been performed in order to evaluate the elastic fundamental period of vibration of buildings as a function of structural morphology (height, plan area, ratio between plan dimensions), infills presence and distribution and soil characteristics. Acknowledgements This study was partially funded by the Italian Department of Civil Protection within the project DPC-RELUIS 2016 - RS4 ''Seismic observatory of structures and health monitoring'' and by the "Centre of Integrated Geomorphology for the Mediterranean Area - CGIAM" within the Framework Agreement with the University of Basilicata "Study, Research and Experimentation in the Field of Analysis and Monitoring of Seismic Vulnerability of Strategic and Relevant Buildings for the purposes of Civil Protection and Development of Innovative Strategies of Seismic Reinforcement".
International Nuclear Information System (INIS)
Yoon, Kyung Ho; Kim, Jae Yong; Lee, Kang Hee; Lee, Young Ho; Kim, Hyung Kyu
2009-07-01
Tube bundle structures within a Boiler or heat exchanger are laid the fluid-structure, thermal-structure and fluid-thermal-structure coupled boundary condition. In these complicated boundary conditions, Fluid-structure interaction (FSI) occurs when fluid flow causes deformation of the structure. This deformation, in turn, changes the boundary conditions for the fluid flow. The structural analysis have been executed as follows. First of all, divide the fluid and structural analysis discipline, and then independently analyzed each other. However, the fluid dynamic force effect the behavior of the structure, and the vibration amplitude of the structure to fluid. FSI analysis model was separately created fluid and structure model, and then defined the fsi boundary condition, and simultaneously analyzed in one domain. The analysis results were compared with those of the experimental method for validating the analysis model. Flow-induced vibration test was executed with single rod configuration. The vibration amplitudes of a fuel rod were measured by the laser vibro-meter system in x and y-direction. The analyses results were not closely with the test data, but the trend was very similar with the test result. In fsi coupled analysis case, the turbulent model was very important with the reliability of the accuracy of the analysis model. Therefore, the analysis model will be needed to further study
Nonlinear interaction and wave breaking with a submerged porous structure
Hsieh, Chih-Min; Sau, Amalendu; Hwang, Robert R.; Yang, W. C.
2016-12-01
Numerical simulations are performed to investigate interactive velocity, streamline, turbulent kinetic energy, and vorticity perturbations in the near-field of a submerged offshore porous triangular structure, as Stokes waves of different heights pass through. The wave-structure interaction and free-surface breaking for the investigated flow situations are established based on solutions of 2D Reynolds Averaged Navier-Stokes equations in a Cartesian grid in combination with K-ɛ turbulent closure and the volume of fluid methodology. The accuracy and stability of the adopted model are ascertained by extensive comparisons of computed data with the existing experimental and theoretical findings and through efficient predictions of the internal physical kinetics. Simulations unfold "clockwise" and "anticlockwise" rotation of fluid below the trough and the crest of the viscous waves, and the penetrated wave energy creates systematic flow perturbation in the porous body. The interfacial growths of the turbulent kinetic energy and the vorticity appear phenomenal, around the apex of the immersed structure, and enhanced significantly following wave breaking. Different values of porosity parameter and two non-porous cases have been examined in combination with varied incident wave height to reveal/analyze the nonlinear flow behavior in regard to local spectral amplification and phase-plane signatures. The evolution of leading harmonics of the undulating free-surface and the vertical velocity exhibits dominating roles of the first and the second modes in inducing the nonlinearity in the post-breaking near-field that penetrates well below the surface layer. The study further suggests the existence of a critical porosity that can substantially enhance the wave-shoaling and interface breaking.
Influence of ground water on soil-structure interaction
International Nuclear Information System (INIS)
Costantino, C.J.; Lung, R.H.; Graves, H.L.
1987-01-01
The study of structural response to seismic inputs has been extensively studied and, particularly with the advent of the growth of digital computer capability, has lead to the development of numerical methods of analysis which are used as standard tools for the design of structures. One aspect of the soil-structure interaction (SSI) process which has not been developed to the same degree of sophistication is the impact of ground water (or pure water) on the response of the soil-structure system. There are very good reasons for his state of affairs, however, not the least of which is the difficulty of incorporating the true constitutive behavior of saturated soils into the analysis. At the large strain end of the spectrum, the engineer is concerned with the potential development of failure conditions under the structure, and is typically interested in the onset of liquefaction conditions. The current state of the art in this area is to a great extent based on empirical methods of analysis which were developed from investigations of limited failure data from specific sites around the world. Since it is known that analytic solutions are available for only the simplest of configurations, a numerical finite element solution process was developed. Again, in keeping with typical SSI analyses, in order to make the finite element approach yield resonable results, a comparable transmitting boundary formulation was included in the development. The purpose of the transmitting boundary is, of course, to allow for the treatment of extended soil/water half-space problems. For the calculations presented herein, a simple one dimensional transmitting boundary model was developed and utilized
Development of the tube bundle structure for fluid-structure interaction analysis model
International Nuclear Information System (INIS)
Yoon, Kyung Ho; Kim, Jae Yong
2010-02-01
Tube bundle structures within a Boiler or heat exchanger are laid the fluid-structure, thermal-structure and fluid-thermal-structure coupled boundary condition. In these complicated boundary conditions, Fluid-structure interaction (FSI) occurs when fluid flow causes deformation of the structure. This deformation, in turn, changes the boundary conditions for the fluid flow. The structural analysis discipline, and then independently analyzed each other. However, the fluid dynamic force effect the behavior of the structure, and the vibration amplitude of the structure to fluid. FSI analysis model was separately created fluid and structure model, and then defined the fsi boundary condition, and simultaneously analyzed in one domain. The analysis results were compared with those of the experimental method for validating the analysis model. Flow-induced vibration test was executed with single rod configuration. The vibration amplitudes of a fuel rod were measured by the laser vibro-meter system in x and y-direction. The analyses results were not closely with the test data, but the trend was very similar with the test result. In fsi coupled analysis case, the turbulent model was very important with the reliability of the accuracy of the analysis model. Therefore, the analysis model will be needed to further study
Structure homology and interaction redundancy for discovering virus–host protein interactions
de Chassey, Benoît; Meyniel-Schicklin, Laurène; Aublin-Gex, Anne; Navratil, Vincent; Chantier, Thibaut; André, Patrice; Lotteau, Vincent
2013-01-01
Virus–host interactomes are instrumental to understand global perturbations of cellular functions induced by infection and discover new therapies. The construction of such interactomes is, however, technically challenging and time consuming. Here we describe an original method for the prediction of high-confidence interactions between viral and human proteins through a combination of structure and high-quality interactome data. Validation was performed for the NS1 protein of the influenza virus, which led to the identification of new host factors that control viral replication. PMID:24008843
Structure homology and interaction redundancy for discovering virus-host protein interactions.
de Chassey, Benoît; Meyniel-Schicklin, Laurène; Aublin-Gex, Anne; Navratil, Vincent; Chantier, Thibaut; André, Patrice; Lotteau, Vincent
2013-10-01
Virus-host interactomes are instrumental to understand global perturbations of cellular functions induced by infection and discover new therapies. The construction of such interactomes is, however, technically challenging and time consuming. Here we describe an original method for the prediction of high-confidence interactions between viral and human proteins through a combination of structure and high-quality interactome data. Validation was performed for the NS1 protein of the influenza virus, which led to the identification of new host factors that control viral replication.
Assessment of seismic wave effects on soil-structure interaction
International Nuclear Information System (INIS)
Bernreuter, D.L.
1977-01-01
One of the most common hypotheses made for soil-structure interaction analyses is that the earthquake input motion is identical at all points beneath the structure. Several papers have recently shown that this assumption may be overly conservative and that the effect of wave passage is extremely important. These studies typically employ a relatively simple model, namely, the basemat is represented by a rectangular rigid foundation resting on top of the soil and connected to the soil by a continuously distributed set of soil springs. The seismic input is applied at the base of the soil springs and is assumed to be traveling at a constant wave velocity across the site. It ispossible to improve on the soil/structure model by use of finite element methods; however, little is known about how to model the input seismic energy and typically a simple travelling wave is used. In this paper, the author examines the available data to determine: (i) the appropriate wave velocity to use, and (ii) if the currently availble analytic models are adequate. (Auth.)
Numerical simulation of fluid structure interaction in two flexible tubes
International Nuclear Information System (INIS)
Feng Zhipeng; Zang Fenggang; Zhang Yixiong
2014-01-01
In order to further investigate fluid structure interaction problems, occurring in the nuclear field such as the behavior of PWR fuel rods, steam generator and other heat exchanger tubes, a numerical model was presented. It is a three-dimensional fully coupled approach with solving the fluid flow and the structure vibration simultaneously, for the tube bundles in cross flow. The unsteady three-dimensional Navier-Stokes equation and LES turbulence model were solved with finite volume approach on structured grids combined with the technique of dynamic mesh. The dynamic equilibrium equation was discretized according to the finite element theory. The vibration response of a single tube in cross flow was calculated by the numerical model. Both the amplitude and frequency were compared with experimental data and existing models in the literature. It is shown that the present model is reasonable. The flow induced vibration characteristics, for both inline and parallel sets in cross flow, were investigated by the numerical model. The dynamic response and flow characteristics, for both inline tubes and parallel tubes with pitch ratio of 1.2, 1.6, 2, 3 and 4 under different incident velocities, were studied. Critical pitch and critical velocity were obtained. (authors)
Structural interaction between gender and race inequality in Brazil
Directory of Open Access Journals (Sweden)
José Alcides Figueiredo Santos
2010-01-01
Full Text Available This paper is guided by the theoretical notion that social divisions generate effects derived from its structural interaction. Having in mind this theoretical motivation, it estimates the gender earnings gap among white e non white (black and mixed color groups in Brazil. All the eight Generalized Linear Models estimated, whose variables are successively included, show that the gender gap is big across both racial groups but it is bigger among whites. The investigation explores the role of the underlying context of class inequality, as well as others factors, on understanding the racial variation of the gender inequality. The study considers that the characteristics of the racial inequality in Brazil, as well as the intersection between class and race, explain the bigger gender advantage for the white man. The racial hierarchy establishes limits of variation on the gender hierarchy for the non white.
Structure Formation Mechanisms during Solid Ti with Molten Al Interaction
International Nuclear Information System (INIS)
Gurevich, L; Pronichev, D; Trunov, M
2016-01-01
The study discuses advantages and disadvantages of previously proposed mechanisms of the formation of structure between solid Ti and molten Al and presents a new mechanism based on the reviewed and experimental data. The previously proposed mechanisms were classified into three groups: mechanisms of precipitation, mechanisms of destruction and mechanisms of chemical interaction between intermetallics and melt. The reviewed mechanisms did not explain the formation of heterogeneous interlayer with globular aluminide particles and thin layers of pure Al, while the present study reveals variation in the solid Ti/molten Al reaction kinetics during various phases of laminated metal-intermetallic composite formation. The proposed mechanism considers formed during composite fabrication thin oxide interlayers between Ti and Al evolution and its impact on the intermetallic compound formation and explains the initial slow rate of intermetallic interlayer formation and its subsequent acceleration when the oxide foils are ruptured. (paper)
Fluid-Structure Interaction Analysis of Parachute Finite Mass Inflation
Directory of Open Access Journals (Sweden)
Xinglong Gao
2016-01-01
Full Text Available Parachute inflation is coupled with sophisticated fluid-structure interaction (FSI and flight mechanic behaviors in a finite mass situation. During opening, the canopy often experiences the largest deformation and loading. To predict the opening phase of a parachute, a computational FSI model for the inflation of a parachute, with slots on its canopy fabric, is developed using the arbitrary Lagrangian-Euler coupling penalty method. In a finite mass situation, the fluid around the parachute typically has an unsteady flow; therefore, a more complex opening phase and FSI dynamics of a parachute are investigated. Navier-Stokes (N-S equations for uncompressible flow are solved using an explicit central difference method. The three-dimensional visualization of canopy deformation as well as the evolution of dropping velocity and overload is obtained and compared with the experimental results. This technique could be further applied in the airdrop test of a parachute for true prediction of the inflation characteristics.
Dynamic Analysis of Wind Turbines Including Soil-Structure Interaction
DEFF Research Database (Denmark)
Harte, M.; Basu, B.; Nielsen, Søren R.K.
2012-01-01
This paper investigates the along-wind forced vibration response of an onshore wind turbine. The study includes the dynamic interaction effects between the foundation and the underlying soil, as softer soils can influence the dynamic response of wind turbines. A Multi-Degree-of-Freedom (MDOF......) horizontal axes onshore wind turbine model is developed for dynamic analysis using an Euler–Lagrangian approach. The model is comprised of a rotor blade system, a nacelle and a flexible tower connected to a foundation system using a substructuring approach. The rotor blade system consists of three rotating...... for displacement of the turbine system are obtained and the modal frequencies of the combined turbine-foundation system are estimated. Simulations are presented for the MDOF turbine structure subjected to wind loading for different soil stiffness conditions. Steady state and turbulent wind loading, developed using...
Pose Estimation of Interacting People using Pictorial Structures
DEFF Research Database (Denmark)
Fihl, Preben; Moeslund, Thomas B.
2010-01-01
Pose estimation of people have had great progress in recent years but so far research has dealt with single persons. In this paper we address some of the challenges that arise when doing pose estimation of interacting people. We build on the pictorial structures framework and make important...... contributions by combining color-based appearance and edge information using a measure of the local quality of the appearance feature. In this way we not only combine the two types of features but dynamically find the optimal weighting of them. We further enable the method to handle occlusions by searching...... a foreground mask for possible occluded body parts and then applying extra strong kinematic constraints to find the true occluded body parts. The effect of applying our two contributions are show through both qualitative and quantitative tests and show a clear improvement on the ability to correctly localize...
Non-Newtonian fluid structure interaction in flexible biomimetic microchannels
Kiran, M.; Dasgupta, Sunando; Chakraborty, Suman
2017-11-01
To investigate the complex fluid structure interactions in a physiologically relevant microchannel with deformable wall and non-Newtonian fluid that flows within it, we fabricated cylindrical microchannels of various softness out of PDMS. Experiments to measure the transient pressure drop across the channel were carried out with high sampling frequencies to capture the intricate flow physics. In particular, we showed that the waveforms varies greatly for each of the non-Newtonian and Newtonian cases for both non-deformable and deformable microchannels in terms of the peak amplitude, r.m.s amplitude and the crest factor. In addition, we carried out frequency sweep experiments to evaluate the frequency response of the system. We believe that these results will aid in the design of polymer based microfluidic phantoms for arterial FSI studies, and in particular for studying blood analog fluids in cylindrical microchannels as well as developing frequency specific Lab-on-chip systems for medical diagnostics.
Fluid transport due to nonlinear fluid-structure interaction
DEFF Research Database (Denmark)
Jensen, Jakob Søndergaard
1997-01-01
This work considers nonlinear fluid-structure interaction for a vibrating pipe containing fluid. Transverse pipe vibrations will force the fluid to move relative to the pipe creating unidirectional fluid flow towards the pipe end. The fluid flow induced affects the damping and the stiffness...... of the pipe. The behavior of the system in response to lateral resonant base excitation is analysed numerically and by the use of a perturbation method (multiple scales). Exciting the pipe in the fundamental mode of vibration seems to be most effective for transferring energy from the shaker to the fluid......, whereas higher modes of vibration can be used to transport fluid with pipe vibrations of smaller amplitude. The effect of the nonlinear geometrical terms is analysed and these terms are shown to affect the response for higher modes of vibration. Experimental investigations show good agreement...
Inferring the interaction structure of resistance to antimicrobials.
Zawack, Kelson; Love, Will; Lanzas, Cristina; Booth, James G; Gröhn, Yrjö T
2018-04-01
The growth of antimicrobial resistance presents a significant threat to human and animal health. Of particular concern is multi-drug resistance, as this increases the chances an infection will be untreatable by any antibiotic. In order to understand multi-drug resistance, it is essential to understand the association between drug resistances. Pairwise associations characterize the connectivity between resistances and are useful in making decisions about courses of treatment, or the design of drug cocktails. Higher-order associations, interactions, which tie together groups of drugs can suggest commonalities in resistance mechanism and lead to their identification. To capture interactions, we apply log-linear models of contingency tables to analyze publically available data on the resistance of Escheresia coli isolated from chicken and turkey meat by the National Antimicrobial Resistance Monitoring System. Standard large sample and conditional exact testing approaches for assessing significance of parameters in these models breakdown due to structured patterns inherent to antimicrobial resistance. To address this, we adopt a Bayesian approach which reveals that E. coli resistance associations can be broken into two subnetworks. The first subnetwork is characterized by a hierarchy of β-lactams which is consistent across the chicken and turkey datasets. Tier one in this hierarchy is a near equivalency between amoxicillin-clavulanic acid, ceftriaxone and cefoxitin. Susceptibility to tier one then implies susceptibility to ceftiofur. The second subnetwork is characterized by more complex interactions between a variety of drug classes that vary between the chicken and turkey datasets. Copyright © 2018 Elsevier B.V. All rights reserved.
Role of pn-pairs interaction in nuclear structure
International Nuclear Information System (INIS)
Nie, G.K.
2004-01-01
Full text: The nuclear structure approach is based on theory of interaction of pn-pairs with suggestion that proton and neutron of one pair have the same nuclear potential. In frame of this model nuclei with N=Z were analyzed in [1,2]. In [1] radii of position of last proton were estimated on difference of proton and neutron separation energies. In [2] a phenomenological formula for calculation of binding energy of alpha- cluster nuclei was found. Present work is devoted to developing the nuclear structure model. Coulomb energy of nuclei with N=Z has been found from sum of differences of separation energies of protons and neutrons belonging to one pairs. From analysis of nuclei 12 C and 16 O the value of energy of Coulomb repulsion between 2 α -clusters has been estimated equal to ε C α =1.925 MeV [3], which means that value of nuclear (meson) interaction between 2 α -clusters is expected to be ε m αα = ε cov αα + ε C α =4.350 MeV. From suggestion that energy of long range Coulomb repulsion is compensated by surface tension energy an equation has been found to calculate radius of position of last proton on value of Z. Charge radii of nuclei from 58 Ni to 208 Bi and further have been calculated with difference from experimental ones in several hundredths of fm. In the approach binding energy of excess neutrons stays beyond the consideration. Therefore, in calculation of binding energies of nuclei the experimental values of separation energies of excess neutrons are used. There is a good agreement between calculated values of binding energies of some isotopes of all known elements as well as separation energies of alpha particle and deuteron and experimental data. The difference from experimental binding energy in most of the cases is about 0.5% and less
Interactive computer graphics displays for hierarchical data structures
International Nuclear Information System (INIS)
Cahn, D.F.; Murano, C.V.
1980-05-01
An interactive computer graphical display program was developed as an aid to user visualization and manipulation of hierarchically structured data systems such as thesauri. In the present configuration, a thesaurus term and its primary and secondary conceptual neighbors are presented to the user in tree graph form on a CRT; the user then designates, via light pen or keyboard, any of the neighbors as the next term of interest and receives a new display centered on this term. By successive specification of broader, narrower, and related terms, the user can course rapidly through the thesaurus space and refine his search file. At any stage, he deals with a term-centered, conceptually meaningful picture of a localized portion of the thesaurus, and is freed from the artificial difficulties of handling the traditional alphabetized thesaurus. Intentional limitation of the associative range of each display frame, and the use of color, case, and interconnecting vectors to encode relationships among terms, enhance interpretability of the display. Facile movement through the term space, provided by interactive computation, allows the display to remain simple, and is an essential element of the system. 3 figures
Fluid-structure interactions in one-dimensional linear cases
International Nuclear Information System (INIS)
Schumann, U.
1979-01-01
The interaction of pressure waves in a pipe with an elastic endwall (piston) is analyzed using a linear ('acoustic') model. Two transient and two periodic cases are investigated. In the transient cases the motions are initiated by either a sudden pressure drop at the opeen end (breaking membrane) or by a sudden release of the piston from a non-equilibrium position ('snapback'); in the latter case the other end of the pipe is closed. In the periodic cases harmonic oscillations of the piston and the fluid are investigated with the other end of the pipe being either closed or open (kept at constant pressure). The problem is characterized by three non-dimensional numbers (e.g.: Mach-, Strouhal-, and an interaction-number). The solution of the wave equation for the pressure accounting for the coupling to the structure can be reduced analytically to the problem of integrating one ordinary differential equation of second order in time. This differential equation in turn can be integrated analytically at least for a certain time period. At later times this ordinary differential equation is integrated numerically. For the periodic cases eigenvalue-problems arise with an infinite number of solutions. The first few eigensolutions are given. (orig./RW) [de
Quasi-Eulerian formulation for fluid-structure interaction
International Nuclear Information System (INIS)
Kennedy, J.M.; Belytschko, T.B.
1979-01-01
In this paper, recent developments of a quasi-Eulerian finite element formulation for the treatment of the fluid in fluid-structure interaction problems are described. The present formulation is applicable both to plane two-dimensional and axisymmetric three-dimensional problems. In order to reduce the noise associated with the convection terms, an amplification factor is used to implement an up-winding type scheme. The application of the method is illustrated in two problems which are of importance in nuclear reactor safety: 1. A two-dimensional model of a cross section of a subassembly configuration, where the quasi-Eulerian formulation is used to model the fluid adjacent to the structures and in the channel between the subassemblies. 2. Pressure transients in a straight pipe, where the axisymmetric formulation is used to model the fluid in the pipe. These results are compared to experimental results for these problems and compare quite well. The major problem in the application of these methods appears to be the automation of the scheme for moving the fluid nodes. Several alternative schemes are used in the problems described here, and a more general scheme which appears to offer a reasonable (orig.)
Structure of Microgels with Debye–Hückel Interactions
Directory of Open Access Journals (Sweden)
Hideki Kobayashi
2014-05-01
Full Text Available The structural properties of model microgel particles are investigated by molecular dynamics simulations applying a coarse-grained model. A microgel is comprised of a regular network of polymers internally connected by tetra-functional cross-links and with dangling ends at its surface. The self-avoiding polymers are modeled as bead-spring linear chains. Electrostatic interactions are taken into account by the Debye–Hückel potential. The microgels exhibit a quite uniform density under bad solvent conditions with a rather sharp surface. With increasing Debye length, structural inhomogeneities appear, their surface becomes fuzzy and, at very large Debye lengths, well defined again. Similarly, the polymer conformations change from a self-avoiding walk to a rod-like behavior. Thereby, the average polymer radius of gyration follows a scaling curve in terms of polymer length and persistence length, with an asymptotic rod-like behavior for swollen microgels and self-avoiding walk behavior for weakly swollen gel particles.
Directory of Open Access Journals (Sweden)
Chi-Seung Lee
2012-06-01
Full Text Available In the present study, the structural response of breakwaters installed on container carriers against green water impact loads was numerically investigated on the basis of the fluid-structure interaction analysis. A series of numerical studies is carried out to induce breakwater collapse under such conditions, whereby a widely accepted fluid-structure interaction analysis technique is adopted to realistically consider the phenomenon of green water impact loads. In addition, the structural behaviour of these breakwaters under green water impact loads is investigated simultaneously throughout the transient analysis. A verification study of the numerical results is performed using data from actual collapse incidents of breakwaters on container carriers. On the basis of the results of a series of numerical analyses, the pressure distribution of green water was accurately predicted with respect to wave mass and velocity. It is expected that the proposed analytical methodology and predicted pressure distribution could be used as a practical guideline for the design of breakwaters on container carriers.
A test to evaluation non-linear soil structure interaction
International Nuclear Information System (INIS)
Hagiwara, T.; Kitada, Y.
2005-01-01
JNES is planning a new project to study non-linear soil-structure interaction (SSI) effect under large earthquake ground motions equivalent to and/or over a design earthquake ground motion of S2. Concerning the SSI test, it is pointed out that handling of the scale effect of the specimen taking into account the surrounding soil on the earthquake response evaluation to the actual structure is essential issue for the scaled model test. Thus, for the test, the largest specimen possible and the biggest input motion possible are necessary. Taking into account the above issues, new test methodology, which utilizes artificial earthquake ground motion, is considered desirable if it can be performed at a realistic cost. With this motivation, we have studied the test methodology which applying blasting power as for a big earthquake ground motion. The information from a coalmine company in the U.S.A. indicates that the works performed in the surface coalmine to blast a rock covering a coal layer generates a big artificial ground motion, which is similar to earthquake ground motion. Application of this artificial earthquake ground motion for the SSI test is considered very promising because the blasting work is carried out periodically for mining coal so that we can apply artificial motions generated by the work if we construct a building model at a closed point to the blasting work area. The major purposes of the test are to understand (a) basic earthquake response characteristics of a Nuclear Power Plant (NPP) reactor building when a large earthquake strikes the NPP site and (b) nonlinear characteristics of SSI phenomenon during a big earthquake. In the paper of ICONE-13, we will introduce the test method and basic characteristics of measured artificial ground motions generated by the blasting works on an actual site. (authors)
Thermal fatigue. Fluid-structure interaction at thermal mixing events
Energy Technology Data Exchange (ETDEWEB)
Schuler, X.; Herter, K.H.; Moogk, S. [Stuttgart Univ. (Germany). MPA; Laurien, E.; Kloeren, D.; Kulenovic, R.; Kuschewski, M. [Stuttgart Univ. (Germany). Inst. of Nuclear Technology and Energy Systems
2012-07-01
In the framework of the network research project ''Thermal Fatigue - Basics of the system-, outflow- and material-characteristics of piping under thermal fatigue'' funded by the German Federal Ministry of Education and Research (BMBF) fundamental numerical and experimental investigations on the material behaviour under transient thermal-mechanical stress conditions (high cycle fatigue - HCF) are carried out. The project's background and its network of scientific working groups with their individual working tasks are briefly introduced. The main focus is especially on the joint research tasks within the sub-projects of MPA and IKE which are dealing with thermal mixing of flows in a T-junction configuration and the fluidstructure- interactions (FSI). Therefore, experiments were performed with the newly established FSI test facility at MPA which enables single-phase flow experiments of water in typical power plant piping diameters (DN40 and DN80) at high pressure (maximum 75 bar) and temperatures (maximum 280 C). The experimental results serve as validation data base for numerical modelling of thermal flow mixing by means of thermo-fluid dynamics simulations applying CFD techniques and carried out by IKE as well as for modelling of thermal and mechanical loads of the piping structure by structural mechanics simulations with FEM methods which are executed by MPA. The FSI test facility will be described inclusively the applied measurement techniques, e. g. in particular the novel near-wall LED-induced Fluorescence method for non-intrusive flow temperature measurements. First experimental data and numerical results from CFD and FEM simulations of the thermal mixing of flows in the T-junction are presented.
Nonlinear dynamic soil-structure interaction in earthquake engineering
International Nuclear Information System (INIS)
Nieto-Ferro, Alex
2013-01-01
The present work addresses a computational methodology to solve dynamic problems coupling time and Laplace domain discretizations within a domain decomposition approach. In particular, the proposed methodology aims at meeting the industrial need of performing more accurate seismic risk assessments by accounting for three-dimensional dynamic soil-structure interaction (DSSI) in nonlinear analysis. Two subdomains are considered in this problem. On the one hand, the linear and unbounded domain of soil which is modelled by an impedance operator computed in the Laplace domain using a Boundary Element (BE) method; and, on the other hand, the superstructure which refers not only to the structure and its foundations but also to a region of soil that possibly exhibits nonlinear behaviour. The latter sub-domain is formulated in the time domain and discretized using a Finite Element (FE) method. In this framework, the DSSI forces are expressed as a time convolution integral whose kernel is the inverse Laplace transform of the soil impedance matrix. In order to evaluate this convolution in the time domain by means of the soil impedance matrix (available in the Laplace domain), a Convolution Quadrature-based approach called the Hybrid Laplace-Time domain Approach (HLTA), is thus introduced. Its numerical stability when coupled to Newmark time integration schemes is subsequently investigated through several numerical examples of DSSI applications in linear and nonlinear analyses. The HLTA is finally tested on a more complex numerical model, closer to that of an industrial seismic application, and good results are obtained when compared to the reference solutions. (author)
Thermal fatigue. Fluid-structure interaction at thermal mixing events
International Nuclear Information System (INIS)
Schuler, X.; Herter, K.H.; Moogk, S.; Laurien, E.; Kloeren, D.; Kulenovic, R.; Kuschewski, M.
2012-01-01
In the framework of the network research project ''Thermal Fatigue - Basics of the system-, outflow- and material-characteristics of piping under thermal fatigue'' funded by the German Federal Ministry of Education and Research (BMBF) fundamental numerical and experimental investigations on the material behaviour under transient thermal-mechanical stress conditions (high cycle fatigue - HCF) are carried out. The project's background and its network of scientific working groups with their individual working tasks are briefly introduced. The main focus is especially on the joint research tasks within the sub-projects of MPA and IKE which are dealing with thermal mixing of flows in a T-junction configuration and the fluidstructure- interactions (FSI). Therefore, experiments were performed with the newly established FSI test facility at MPA which enables single-phase flow experiments of water in typical power plant piping diameters (DN40 and DN80) at high pressure (maximum 75 bar) and temperatures (maximum 280 C). The experimental results serve as validation data base for numerical modelling of thermal flow mixing by means of thermo-fluid dynamics simulations applying CFD techniques and carried out by IKE as well as for modelling of thermal and mechanical loads of the piping structure by structural mechanics simulations with FEM methods which are executed by MPA. The FSI test facility will be described inclusively the applied measurement techniques, e. g. in particular the novel near-wall LED-induced Fluorescence method for non-intrusive flow temperature measurements. First experimental data and numerical results from CFD and FEM simulations of the thermal mixing of flows in the T-junction are presented.
Numerical simulation of the fluid-structure interaction between air blast waves and soil structure
Umar, S.; Risby, M. S.; Albert, A. Luthfi; Norazman, M.; Ariffin, I.; Alias, Y. Muhamad
2014-03-01
Normally, an explosion threat on free field especially from high explosives is very dangerous due to the ground shocks generated that have high impulsive load. Nowadays, explosion threats do not only occur in the battlefield, but also in industries and urban areas. In industries such as oil and gas, explosion threats may occur on logistic transportation, maintenance, production, and distribution pipeline that are located underground to supply crude oil. Therefore, the appropriate blast resistances are a priority requirement that can be obtained through an assessment on the structural response, material strength and impact pattern of material due to ground shock. A highly impulsive load from ground shocks is a dynamic load due to its loading time which is faster than ground response time. Of late, almost all blast studies consider and analyze the ground shock in the fluid-structure interaction (FSI) because of its influence on the propagation and interaction of ground shock. Furthermore, analysis in the FSI integrates action of ground shock and reaction of ground on calculations of velocity, pressure and force. Therefore, this integration of the FSI has the capability to deliver the ground shock analysis on simulation to be closer to experimental investigation results. In this study, the FSI was implemented on AUTODYN computer code by using Euler-Godunov and the arbitrary Lagrangian-Eulerian (ALE). Euler-Godunov has the capability to deliver a structural computation on a 3D analysis, while ALE delivers an arbitrary calculation that is appropriate for a FSI analysis. In addition, ALE scheme delivers fine approach on little deformation analysis with an arbitrary motion, while the Euler-Godunov scheme delivers fine approach on a large deformation analysis. An integrated scheme based on Euler-Godunov and the arbitrary Lagrangian-Eulerian allows us to analyze the blast propagation waves and structural interaction simultaneously.
International Nuclear Information System (INIS)
Wallace, S.T.
1998-10-01
This Ph.D. thesis concerns the structural characterization of RNA. The work is split into two sections: 1) in vitro selection and characterization of RNAs which bind antibiotics and 2) crystal structure of a nuclease resistant RNA molecule used in antisense applications. Understanding antibiotic-RNA interactions is crucial in aiding rational drug design. We were interested in studying antibiotic interactions with RNAs small enough to characterize at the molecular and possibly at the atomic level. In order to do so, we previously performed in vitro selection to find small RNAs which bind to the peptide antibiotic viomycin and the aminoglycoside antibiotic streptomycin. The characterization of the viomycin-binding RNAs revealed the necessity of a pseudoknot-structure in order to interact with the antibiotic. The RNAs which were selected to interact with streptomycin require the presence of magnesium to bind the antibiotic. One of the RNAs, upon interacting with streptomycin undergoes a significant conformational change spanning the entire RNA sequence needed to bind the antibiotic. In a quest to design oligodeoxynucleotides (ODNs) which are able to specifically bid and inactivate the mRNA of a gene, it is necessary to fulfill two criteria: 1) increase binding affinity between the ODN and the target RNA and 2) increase the ODN's resistance to nuclease degradation. An ODN with an aminopropyl modification at the 2' position of its ribose has emerged as the most successful candidate at fulfilling both criteria. It is the most nuclease resistant modification known to date. We were interested in explaining how this modification is able to circumvent degradation by nucleases. A dodecamer containing a single 2'-O-aminopropyl modified nucleotide was crystallized and the structure was solved to a resolution of 1.6 A. In an attempt to explain the nuclease resistance, the crystal coordinates were modeled into the active exonuclease site of DNA polymerase I. We propose the
Electromagnetic Structure and Electron Acceleration in Shock–Shock Interaction
Energy Technology Data Exchange (ETDEWEB)
Nakanotani, Masaru [Interdisciplinary Graduate School of Engineering Sciences, Kyushu University, 6-1 Kasuga-Koen, Kasuga, Fukuoka, 816-8580 (Japan); Matsukiyo, Shuichi; Hada, Tohru [Faculty of Engineering Sciences, Kyushu University, 6-1 Kasuga-Koen, Kasuga, Fukuoka, 816-8580 (Japan); Mazelle, Christian X., E-mail: nakanot@esst.kyushu-u.ac.jp [IRAP, Université Paul Sabatier Toulouse III-CNRS, F-31028 Toulouse Cedex 4 (France)
2017-09-10
A shock–shock interaction is investigated by using a one-dimensional full particle-in-cell simulation. The simulation reproduces the collision of two symmetrical high Mach number quasi-perpendicular shocks. The basic structure of the shocks and ion dynamics is similar to that obtained by previous hybrid simulations. The new aspects obtained here are as follows. Electrons are already strongly accelerated before the two shocks collide through multiple reflection. The reflected electrons self-generate waves upstream between the two shocks before they collide. The waves far upstream are generated through the right-hand resonant instability with the anomalous Doppler effect. The waves generated near the shock are due to firehose instability and have much larger amplitudes than those due to the resonant instability. The high-energy electrons are efficiently scattered by the waves so that some of them gain large pitch angles. Those electrons can be easily reflected at the shock of the other side. The accelerated electrons form a power-law energy spectrum. Due to the accelerated electrons, the pressure of upstream electrons increases with time. This appears to cause the deceleration of the approaching shock speed. The accelerated electrons having sufficiently large Larmor radii are further accelerated through the similar mechanism working for ions when the two shocks are colliding.
Assessing Spurious Interaction Effects in Structural Equation Modeling
Harring, Jeffrey R.; Weiss, Brandi A.; Li, Ming
2015-01-01
Several studies have stressed the importance of simultaneously estimating interaction and quadratic effects in multiple regression analyses, even if theory only suggests an interaction effect should be present. Specifically, past studies suggested that failing to simultaneously include quadratic effects when testing for interaction effects could…
International Nuclear Information System (INIS)
Machida, S; Hirai, H; Kawamura, T; Yamamoto, Y; Yagi, T
2010-01-01
High-pressure experiments of hydrogen hydrate were performed using a diamond anvil cell under conditions of 0.1-44.2 GPa and at room temperature. Also, high pressure Raman studies of solid hydrogen were performed in the pressure range of 0.1-43.7 GPa. X-ray diffractometry (XRD) for hydrogen hydrate revealed that a known high-pressure structure, filled ice Ic structure, of hydrogen hydrate transformed to a new high-pressure structure at approximately 35-40 GPa. A comparison of the Raman spectroscopy of a vibron for hydrogen molecules between hydrogen hydrate and solid hydrogen revealed that the extraction of hydrogen molecules from hydrogen hydrate occurred above 20 GPa. Also, the Raman spectra of a roton revealed that the rotation of hydrogen molecules in hydrogen hydrate was suppressed at around 20 GPa and that the rotation recovered under higher pressure. These results indicated that remarkable intermolecular interactions in hydrogen hydrate between neighboring hydrogen molecules and between guest hydrogen molecules and host water molecules might occur. These intermolecular interactions could produce the stability of hydrogen hydrate.
Studies on Pounding Response Considering Structure-Soil-Structure Interaction under Seismic Loads
Directory of Open Access Journals (Sweden)
Peizhen Li
2017-12-01
Full Text Available Pounding phenomena considering structure–soil–structure interaction (SSSI under seismic loads are investigated in this paper. Based on a practical engineering project, this work presents a three-dimensional finite element numerical simulation method using ANSYS software. According to Chinese design code, the models of adjacent shear wall structures on Shanghai soft soil with the rigid foundation, box foundation and pile foundation are built respectively. In the simulation, the Davidenkov model of the soil skeleton curve is assumed for soil behavior, and the contact elements with Kelvin model are adopted to simulate pounding phenomena between adjacent structures. Finally, the dynamic responses of adjacent structures considering the pounding and SSSI effects are analyzed. The results show that pounding phenomena may occur, indicating that the seismic separation requirement for adjacent buildings of Chinese design code may not be enough to avoid pounding effect. Pounding and SSSI effects worsen the adjacent buildings’ conditions because their acceleration and shear responses are amplified after pounding considering SSSI. These results are significant for studying the effect of pounding and SSSI phenomena on seismic responses of structures and national sustainable development, especially in earthquake prevention and disaster reduction.
Numerical simulation of fluid-structure interaction of compressible flow and elastic structure
Czech Academy of Sciences Publication Activity Database
Hasnedlová, J.; Feistauer, M.; Horáček, Jaromír; Kosík, A.; Kučera, V.
2013-01-01
Roč. 95, Suppl 1 (2013), s. 343-361 ISSN 0010-485X R&D Projects: GA ČR(CZ) GAP101/11/0207 Institutional research plan: CEZ:AV0Z20760514 Institutional support: RVO:61388998 Keywords : fluid–structure interaction * compressible flow * discontinuous Galerkin finite element method * coupling algorithms Subject RIV: BI - Acoustics Impact factor: 1.055, year: 2013 http://link.springer.com/article/10.1007%2Fs00607-012-0240-x
Yang, Bingen
2005-01-01
Stress, Strain, and Structural Dynamics is a comprehensive and definitive reference to statics and dynamics of solids and structures, including mechanics of materials, structural mechanics, elasticity, rigid-body dynamics, vibrations, structural dynamics, and structural controls. This text integrates the development of fundamental theories, formulas and mathematical models with user-friendly interactive computer programs, written in the powerful and popular MATLAB. This unique merger of technical referencing and interactive computing allows instant solution of a variety of engineering problems
Soil-structure interaction effects on the reliability evaluation of reactor containments
International Nuclear Information System (INIS)
Pires, J.; Hwang, H.; Reich, M.
1986-01-01
The probability-based method for the seismic reliability assessment of nuclear structures, which has been developed at Brookhaven National Laboratory (BNL), is extended to include the effects of soil-structure interaction. A reinforced concrete containment building is analyzed in order to examine soil-structure interaction effects on: (1) structural fragilities; (2) floor response spectra statistics; and (3) correlation coefficients for total acceleration responses at specified structural locations
Investigation of physical structures and interactions at high energy
International Nuclear Information System (INIS)
Anderson, E.W.
1991-01-01
Contract AC02-85ER40193 supports the investigation of fundamental structures and interactions at high energy by the Iowa State University Alpha HEP Group. Three major activities constitute the present focus of our research. Experiment E-735, performed at the Fermilab Tevatron Collider, is a search for a deconfined quark-gluon plasma phase of hadronic matter predicted to occur when temperatures of 240 MeV are achieved. The primary data were obtained in 1988--1989, from these data the collaboration is analyzing the charged particle multiplicity and transverse momentum distributions of the produced secondaries. These measurements are regarded on theoretical grounds to be sensitive indicators of the formation of a high-temperature plasma. The TPC detector, installed in the PEP ring at SLAC, has accumulated about 60,000 hadronic events at 29 GeV center-of-mass energy. Several thousand events have high-precision vertex chamber measurements. Physics analysis of charmed quark events, in addition to a measurement of the QCD strong coupling, are in progress. Our identification and reconstruction of D o , D*, and D s , charmed mesons will be useful for subsequent B meson studies in the TPC detector. The SSC liquid argon major subsystem tests at BNL and studies of gauge boson identification and reconstruction for large SSC detectors are in progress. Several crucial problems related to calorimeter geometries, coil geometries, and discrimination methods in full SSC events have been solved, and work is in progress on a one million event test of WW scattering capability up to 2 TeV. Our participation in the subsystem proposal involves construction of the module, data-taking at the AGS, and data analysis
Zhao, Xuefei; Wang, Shuguang; Du, Dongsheng; Liu, Weiqing
2017-01-01
In this study, simplified numerical models are developed to analyze the soil-structure interaction (SSI) effect on frame structures equipped with viscoelastic dampers (VEDs) based on pile group foundation. First, a single degree-of-freedom (SDOF) oscillator is successfully utilized to replace the SDOF energy dissipated structure considering the SSI effect. The equivalent period and damping ratio of the system are obtained through analogical analysis using the frequency transfer function with adoption of the modal strain energy (MSE) technique. A parametric analysis is carried out to study the SSI effect on the performance of VEDs. Then the equilibrium equations of the multi degree-of-freedom (MDOF) structure with VEDs considering SSI effect are established in the frequency domain. Based on the assumption that the superstructure of the coupled system possesses the classical normal mode, the MDOF superstructure is decoupled to a set of individual SDOF systems resting on a rigid foundation with adoption of the MSE technique through formula derivation. Numerical results demonstrate that the proposed methods have the advantage of reducing computational cost, however, retaining the satisfactory accuracy. The numerical method proposed herein can provide a fast evaluation of the efficiency of VEDs considering the SSI effect.
Earthquake analysis of structures including structure-soil interaction by a substructure method
International Nuclear Information System (INIS)
Chopra, A.K.; Guttierrez, J.A.
1977-01-01
A general substructure method for analysis of response of nuclear power plant structures to earthquake ground motion, including the effects of structure-soil interaction, is summarized. The method is applicable to complex structures idealized as finite element systems and the soil region treated as either a continuum, for example as a viscoelastic halfspace, or idealized as a finite element system. The halfspace idealization permits reliable analysis for sites where essentially similar soils extend to large depths and there is no rigid boundary such as soil-rock interface. For sites where layers of soft soil are underlain by rock at shallow depth, finite element idealization of the soil region is appropriate; in this case, the direct and substructure methods would lead to equivalent results but the latter provides the better alternative. Treating the free field motion directly as the earthquake input in the substructure method eliminates the deconvolution calculations and the related assumption -regarding type and direction of earthquake waves- required in the direct method. The substructure method is computationally efficient because the two substructures-the structure and the soil region- are analyzed separately; and, more important, it permits taking advantage of the important feature that response to earthquake ground motion is essentially contained in the lower few natural modes of vibration of the structure on fixed base. For sites where essentially similar soils extend to large depths and there is no obvious rigid boundary such as a soil-rock interface, numerical results for earthquake response of a nuclear reactor structure are presented to demonstrate that the commonly used finite element method may lead to unacceptable errors; but the substructure method leads to reliable results
Models test on dynamic structure-structure interaction of nuclear power plant buildings
International Nuclear Information System (INIS)
Kitada, Y.; Hirotani, T.
1999-01-01
A reactor building of an NPP (nuclear power plant) is generally constructed closely adjacent to a turbine building and other buildings such as the auxiliary building, and in increasing numbers of NPPs, multiple plants are being planned and constructed closely on a single site. In these situations, adjacent buildings are considered to influence each other through the soil during earthquakes and to exhibit dynamic behaviour different from that of separate buildings, because those buildings in NPP are generally heavy and massive. The dynamic interaction between buildings during earthquake through the soil is termed here as 'dynamic cross interaction (DCI)'. In order to comprehend DCI appropriately, forced vibration tests and earthquake observation are needed using closely constructed building models. Standing on this background, Nuclear Power Engineering Corporation (NUPEC) had planned the project to investigate the DCI effect in 1993 after the preceding SSI (soil-structure interaction) investigation project, 'model tests on embedment effect of reactor building'. The project consists of field and laboratory tests. The field test is being carried out using three different building construction conditions, e.g. a single reactor building to be used for the comparison purposes as for a reference, two same reactor buildings used to evaluate pure DCI effects, and two different buildings, reactor and turbine building models to evaluate DCI effects under the actual plant conditions. Forced vibration tests and earthquake observations are planned in the field test. The laboratory test is planned to evaluate basic characteristics of the DCI effects using simple soil model made of silicon rubber and structure models made of aluminum. In this test, forced vibration tests and shaking table tests are planned. The project was started in April 1994 and will be completed in March 2002. This paper describes an outline and the summary of the current status of this project. (orig.)
Cold crucible technique for interaction test of molten corium with structure
International Nuclear Information System (INIS)
Ha, Kwang Soon; An, Sang Mo; Min, Beong Tae; Kim, Hwan Yeol
2012-01-01
During a severe accident, the molten corium might interact with several structures in a nuclear power plant such as core peripheral structures, lower plenum, lower head vessel, and external structures of a reactor vessel. The interaction of the molten corium with the structure depends on the molten corium composition, temperature, structural materials, and environmental conditions such as pressure and humidity. For example, the interaction of a metallic molten corium containing metal uranium (U) and zirconium (Zr) with the oxidized steel structure (Fe 2O3 ) is affected by not only thermal ablation but oxidation reduction reaction because the oxidation quotients of the U and Zr are higher than that of Fe. KAERI set up an experimental facility and technique using a cold crucible melting method to verify the interaction mechanism between the metallic molten corium and structural materials. This technique includes the generation of the metallic melt, melt delivery, measurement of the interaction process, and post analyses after the test
An Interactive Exercise To Learn Eukaryotic Cell Structure and Organelle Function.
Klionsky, Daniel J.; Tomashek, John J.
1999-01-01
Describes a cooperative, interactive problem-solving exercise for studying eukaryotic cell structure and function. Highlights the dynamic aspects of movement through the cell. Contains 15 references. (WRM)
Directory of Open Access Journals (Sweden)
Gwendlyn Kollmorgen
Full Text Available Cub domain containing protein 1 (CDCP1 is strongly expressed in tumors derived from lung, colon, ovary, or kidney. It is a membrane protein that is phosphorylated and then bound by Src family kinases. Although expression and phosphorylation of CDCP1 have been investigated in many tumor cell lines, the CDCP1 features responsible for transformation have not been fully evaluated. This is in part due to the lack of an experimental system in which cellular transformation depends on expression of exogenous CDCP1 and Src. Here we use retrovirus mediated co-overexpression of c-Src and CDCP1 to induce focus formation of NIH3T3 cells. Employing different mutants of CDCP1 we show that for a full transformation capacity, the intact amino- and carboxy-termini of CDCP1 are essential. Mutation of any of the core intracellular tyrosine residues (Y734, Y743, or Y762 abolished transformation, and mutation of a palmitoylation motif (C689,690G strongly reduced it. Src kinase binding to CDCP1 was not required since Src with a defective SH2 domain generated even more CDCP1 dependent foci whereas Src myristoylation was necessary. Taken together, the focus formation assay allowed us to define structural requirements of CDCP1/Src dependent transformation and to characterize the interaction of CDCP1 and Src.
International Nuclear Information System (INIS)
Bhaumik, Lopamudra; Raychowdhury, Prishati
2013-01-01
Highlights: • Seismic response analysis of an internal shearwall of a reactor is done. • Incremental dynamic analysis is performed with 30 recorded ground motions. • Equivalent viscous damping increases up to twice when nonlinear SSI is considered. • Roof drift demand increases up to 25% upon consideration of foundation nonlinearity. • Base shear, base moment and ductility reduce up to 62%, 40%, and 35%, respectively. - Abstract: This study focuses on the seismic response analysis of an internal shearwall of a typical Indian reactor resting on a medium dense sandy silty soil, incorporating the nonlinear behavior of the soil-foundation interface. The modeling is done in an open-source finite element framework, OpenSees, where the soil-structure interaction (SSI) is modeled using a Beam-on-Nonlinear-Winkler-Foundation (BNWF) approach. Static pushover analysis and cyclic analysis are performed followed by an incremental dynamic analysis (IDA) with 30 recorded ground motions. For performing IDA, the spectral acceleration of each motion corresponding to the fundamental period, S a (T 1 )is incremented from 0.1 g to 1.0 g with an increment step of 0.1 g. It is observed from the cyclic analysis that the equivalent viscous damping of the system increases upto twice upon incorporation of inelastic SSI. The IDA results demonstrate that the average peak base shear, base moment and displacement ductility demand reduces as much as 62%, 40%, and 35%, respectively, whereas the roof drift demand increases up to 25% upon consideration of foundation nonlinearity for the highest intensity motion. These observations indicate the need of critical consideration of nonlinear soil-structure interaction as any deficient modeling of the same may lead to an inaccurate estimation of the seismic demands of the structure
Energy Technology Data Exchange (ETDEWEB)
Bhaumik, Lopamudra, E-mail: lbhaumi2@illinois.edu [University of Illinois at Urbana-Champaign (United States); Raychowdhury, Prishati, E-mail: prishati@iitk.ac.in [Indian Institute of Technology Kanpur (India)
2013-12-15
Highlights: • Seismic response analysis of an internal shearwall of a reactor is done. • Incremental dynamic analysis is performed with 30 recorded ground motions. • Equivalent viscous damping increases up to twice when nonlinear SSI is considered. • Roof drift demand increases up to 25% upon consideration of foundation nonlinearity. • Base shear, base moment and ductility reduce up to 62%, 40%, and 35%, respectively. - Abstract: This study focuses on the seismic response analysis of an internal shearwall of a typical Indian reactor resting on a medium dense sandy silty soil, incorporating the nonlinear behavior of the soil-foundation interface. The modeling is done in an open-source finite element framework, OpenSees, where the soil-structure interaction (SSI) is modeled using a Beam-on-Nonlinear-Winkler-Foundation (BNWF) approach. Static pushover analysis and cyclic analysis are performed followed by an incremental dynamic analysis (IDA) with 30 recorded ground motions. For performing IDA, the spectral acceleration of each motion corresponding to the fundamental period, S{sub a}(T{sub 1})is incremented from 0.1 g to 1.0 g with an increment step of 0.1 g. It is observed from the cyclic analysis that the equivalent viscous damping of the system increases upto twice upon incorporation of inelastic SSI. The IDA results demonstrate that the average peak base shear, base moment and displacement ductility demand reduces as much as 62%, 40%, and 35%, respectively, whereas the roof drift demand increases up to 25% upon consideration of foundation nonlinearity for the highest intensity motion. These observations indicate the need of critical consideration of nonlinear soil-structure interaction as any deficient modeling of the same may lead to an inaccurate estimation of the seismic demands of the structure.
Magnetic interactions and electronic structure of Ni–Mn–In
Energy Technology Data Exchange (ETDEWEB)
D' Souza, Sunil Wilfred [UGC-DAE Consortium for Scientific Research, Khandwa Road, Indore 452001, Madhya Pradesh (India); Chakrabarti, Aparna [Raja Ramanna Centre for Advanced Technology, Indore 452013, Madhya Pradesh (India); Barman, Sudipta Roy, E-mail: barmansr@gmail.com [UGC-DAE Consortium for Scientific Research, Khandwa Road, Indore 452001, Madhya Pradesh (India)
2016-04-15
Highlights: • The ground state of Ni{sub 2}Mn{sub 1.4}In{sub 0.6} is ferromagnetic. • The magnetic moments of Ni–Mn–In are in good agreement with the magnetization measurements. • Exchange coupling parameters exhibit a strong competition between ferromagnetic and antiferromagnetic configurations. • Jahn–Teller splitting of the Ni 3d e{sub g} states drives the martensite transformation. - Abstract: The electronic structure and magnetic properties of a magnetic shape memory alloy Ni–Mn–In have been studied using spin polarized fully relativistic Korringa–Kohn–Rostoker (SPRKKR) method. The total energy calculations with different starting magnetic spin configurations show that the ground state of Ni{sub 2}Mn{sub 1.4}In{sub 0.6} is ferromagnetic. The spin and orbital magnetic moments of Ni{sub 2}Mn{sub 1.4}In{sub 0.6} and Ni{sub 2}MnIn are in good agreement with the magnetization measurements. The exchange coupling parameters of the different sublattice interactions exhibit a strong competition between ferromagnetic and antiferromagnetic configurations, due to the substitution of excess Mn atoms at the In site in Ni{sub 2}Mn{sub 1.4}In{sub 0.6}. The Curie temperature of Ni{sub 2}MnIn, calculated under a mean field approximation, is found to be in relatively good agreement with the experimental values. While Ni{sub 2}MnIn does not undergo martensite transition, it is shown that a Jahn–Teller splitting of the Ni 3d e{sub g} states plays an important role in driving the martensite transformation in Ni{sub 2}Mn{sub 1.4}In{sub 0.6}. We find that both the calculated ultra-violet photoemission spectra and the inverse photoemission spectra are in good agreement with the existing experimental data.
Shaking table test and analysis of embedded structure soil interaction considering input motion
International Nuclear Information System (INIS)
Matsushima, Y.; Mizuno, H.; Machida, N.; Sato, K.; Okano, H.
1987-01-01
The dynamic interaction between soil and structure is decomposed into inertial interaction (II) and kinematic interaction (KI). II denotes the interaction due to inertial force applied on foundations. KI denotes the interaction of massless foundations subjected to seismic waves. Forced vibration tests by exciters are not enough to evaluate the complete soil-structure interaction due to the lack of KI. To clarify the effects of KI on the seismic response of structure, the authors intended to carry out shaking table tests of the interaction between the soil and the embedded structure. A method to decompose II and KI is introduced which reveals the construction of embedment effects. Finally, the authors discuss the validity of three kinds of simulation analyses, that is, two-dimensional, approximate three-dimensional and rigorous three-dimensional analyses, comparing with the test results
Directory of Open Access Journals (Sweden)
E Wang
2016-09-01
Full Text Available Three material systems: E-glass Vinyl-Ester (EVE composites, sandwich composites with EVE facesheet and monolithic foam core (2 different core thicknesses, and monolithic aluminum alloy plates, were subjected to shock wave loading to study their blast response and fluid-structure interaction behaviors. High-speed photography systems were utilized to obtain the real-time side-view and back face deformation images. A 3-D Digital Image Correlation (DIC technique was used to analyze the real-time back face displacement fields and subsequently obtain the characteristic fluid-structure interaction time. The reflected pressure profiles and the deflection of the back face center point reveal that the areal density plays an important role in the fluid-structure interaction. The predictions from Taylor's model (classical solution, does not consider the compressibility and model by Wang et al. (considers the compressibility were compared with the experimental results. These results indicated that the model by Wang et al. can predict the experimental results accurately, especially during the characteristic fluid-structure interaction time. Further study revealed that the fluid-structure interaction between the fluid and the sandwich composites cannot be simplified as the fluid-structure interaction between the fluid and the facesheet. Also, it was observed that the core thickness affects the fluid-structure interaction behavior of sandwich composites.
Toma, Milan; Einstein, Daniel R; Bloodworth, Charles H; Cochran, Richard P; Yoganathan, Ajit P; Kunzelman, Karyn S
2017-04-01
Over the years, three-dimensional models of the mitral valve have generally been organized around a simplified anatomy. Leaflets have been typically modeled as membranes, tethered to discrete chordae typically modeled as one-dimensional, non-linear cables. Yet, recent, high-resolution medical images have revealed that there is no clear boundary between the chordae and the leaflets. In fact, the mitral valve has been revealed to be more of a webbed structure whose architecture is continuous with the chordae and their extensions into the leaflets. Such detailed images can serve as the basis of anatomically accurate, subject-specific models, wherein the entire valve is modeled with solid elements that more faithfully represent the chordae, the leaflets, and the transition between the two. These models have the potential to enhance our understanding of mitral valve mechanics and to re-examine the role of the mitral valve chordae, which heretofore have been considered to be 'invisible' to the fluid and to be of secondary importance to the leaflets. However, these new models also require a rethinking of modeling assumptions. In this study, we examine the conventional practice of loading the leaflets only and not the chordae in order to study the structural response of the mitral valve apparatus. Specifically, we demonstrate that fully resolved 3D models of the mitral valve require a fluid-structure interaction analysis to correctly load the valve even in the case of quasi-static mechanics. While a fluid-structure interaction mode is still more computationally expensive than a structural-only model, we also show that advances in GPU computing have made such models tractable. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.
Trinus, F P; Braver-Chernobul'skaia, B S; Luĭk, A I; Boldeskul, A E; Velichko, A N
1984-01-01
High affinity interactions between blood serum albumin and five substances of various chemical structure, exhibiting distinct physiological activity, were accompanied by alterations in the protein tertiary structure, while the albumin secondary structure was involved in conformational transformation after less effective affinity binding.
Earthquake analysis of structures including structure-soil interaction by a substructure method
International Nuclear Information System (INIS)
Chopra, A.K.; Guttierrez, J.A.
1977-01-01
A general substructure method for analysis of response of nuclear power plant structures to earthquake ground motion, including the effects of structure-soil interaction, is summarized. The method is applicable to complex structures idealized as finite element systems and the soil region treated as either a continuum, for example as a viscoelastic halfspace, or idealized as a finite element system. The halfspace idealization permits reliable analysis for sites where essentially similar soils extend to large depths and there is no rigid boundary such as soil-rock interface. For sites where layers of soft soil are underlain by rock at shallow depth, finite element idealization of the soil region is appropriate; in this case, the direct and substructure methods would lead to equivalent results but the latter provides the better alternative. Treating the free field motion directly as the earthquake input in the substructure eliminates the deconvolution calculations and the related assumption-regarding type and direction of earthquake waves-required in the direct method. (Auth.)
Dynamic analysis of an industrial structure with fluid-structure interaction
International Nuclear Information System (INIS)
Sigrist, J.F.
2006-01-01
The present paper deals with the dynamic analysis of a nuclear reactor subjected to a shock loading with fluid-structure interaction modeling. The general framework of the study is that of linear vibrations, which are investigated for coupled fluid-structure problems. From a methodological point of view, energy deformation and modal mass calculation are exposed for elasto-acoustic systems. From an industrial point of view, the influence of elasto-acoustic coupling effects are highlighted for the studied structure. The dynamic analysis of the coupled system is carried out with various procedures (static, spectral and temporal methods), which are exposed and compared. As a general result, the spectral method is proved to be the most effective for the industrial problem. From the numerical point of view, the discretization procedure is based on a finite element method for the coupled problem, using a displacement and pressure-displacement potential coupled formulation with axi-symmetric representation of the problem unknowns. A finite element code is developed within MATLAB for the specific study, the numerical calculations presented in the paper are used as reference test cases for integration of the (u,p,φ) formulation in the commercial finite element code Ansys. (author)
Modelling microbial interactions and food structure in predictive microbiology
Malakar, P.K.
2002-01-01
Keywords: modelling, dynamic models, microbial interactions, diffusion, microgradients, colony growth, predictive microbiology.
Growth response of microorganisms in foods is a complex process. Innovations in food production and preservation techniques have resulted in adoption of
Water-mediated ionic interactions in protein structures
Indian Academy of Sciences (India)
ISHWARYA( R SARANI( M KIRTI VAISHNAVI and K SEKAR. Supplementary table 1. List of complete water-mediated ionic interactions formed by different combinations of charged atoms and their corresponding occurrences. S. No. Type.
Structure-Interaction Theory: Conceptual, Contextual and Strategic Influences on Human Communication
Directory of Open Access Journals (Sweden)
Стивен А Биби
2015-12-01
Full Text Available This paper addresses Structure-Interaction Theory (SIT, a theoretical framework that both describes communication messages as well as assists in making predictions about how human communication can be improved based on listener preferences for message structure or interaction. Communication messages may be characterized as existing on a continuum of structure-interaction. Communication structure is the inherent way information in a message is organized. A highly structured message is one in which the message is strategically organized using a planned arrangement of symbols to create meaning. Communication interaction is a way of viewing a message with give-and-take, less sustained “notes,” more change in note sequence and briefer notes. SIT seeks to provide a framework to assist communicators in appropriately adapting a message for maximum effectiveness. Although Structure-Interaction Theory newly articulated here, it is anchored in both classic ways of describing communication, such as rhetoric and dialectic (Aristotle, 1959, as well as more contemporary communication theories (Salem, 2012; Littlejohn & Foss, 2008. Specifically, the paper provides an overview of the theory and its conceptual assumptions, identifies how the theory can help explain and predict communication in several communication contexts (interpersonal, group, public communication, and suggests how SIT may help identify strategies to enhance human development. Structure-Interaction Theory is based on an assumption that a human communication message which is understood, achieves the intended effect of the communicator, and is ethical, requires an appropriate balance of two things: structure and interaction. Communication structure is the inherent way a message is constructed to provide a sustained direction to present information to another person. In linking structure and interaction to Aristotle’s description of messages, rhetoric is a more structured, sustained speech
Effect of groundwater on soil-structure interaction
International Nuclear Information System (INIS)
Xu, J.; Bandyopadhyay, K.K.; Kassir, M.K.
1995-01-01
This paper presents results of a parametric study performed to investigate the effect of pore water in saturated soils on the response of nuclear containment structures to seismic motions. The technique employed uses frequency domain algorithm which incorporates impedances for both dry and saturated soils into an SSI model. A frequency domain time history analysis is carried out using the computer code CARES for a typical PWR containment structure. Structural responses presented in terms of floor response spectra indicate that considering the presence of the pore water in soils could benefit the design of massive nuclear containment structures
Calibrated and Interactive Modelling of Form-Active Hybrid Structures
DEFF Research Database (Denmark)
Quinn, Gregory; Holden Deleuran, Anders; Piker, Daniel
2016-01-01
Form-active hybrid structures (FAHS) couple two or more different structural elements of low self weight and low or negligible bending flexural stiffness (such as slender beams, cables and membranes) into one structural assembly of high global stiffness. They offer high load-bearing capacity...... software packages which introduce interruptions and data exchange issues in the modelling pipeline. The mechanical precision, stability and open software architecture of Kangaroo has facilitated the development of proof-of-concept modelling pipelines which tackle this challenge and enable powerful...... materially-informed sketching. Making use of a projection-based dynamic relaxation solver for structural analysis, explorative design has proven to be highly effective....
Takeda, Takako; Hao, Ming; Cheng, Tiejun; Bryant, Stephen H.; Wang, Yanli
2017-01-01
Drug?drug interactions (DDIs) may lead to adverse effects and potentially result in drug withdrawal from the market. Predicting DDIs during drug development would help reduce development costs and time by rigorous evaluation of drug candidates. The primary mechanisms of DDIs are based on pharmacokinetics (PK) and pharmacodynamics (PD). This study examines the effects of 2D structural similarities of drugs on DDI prediction through interaction networks including both PD and PK knowledge. Our a...
Assessment of soil-structure interaction effects based on simple modes
International Nuclear Information System (INIS)
Philippacopoulos, A.J.; Miller, C.A.
1983-01-01
Soil-structure interaction effects are investigated using a simple mathematical model which employs three degrees-of-freedom. The foundation is approximated by a homogeneous, isotropic, elastic half-space. Harmonic functions and a recorded earthquake are used to represent the free-field input motion. Variations of the response characteristics due to structural and interaction parameters are demonstrated. Response spectra are presented that display the magnitude of the maximum structural response for a range of fixed-base structural frequencies, interaction frequencies and damping. Conclusions are obtained regarding the behavior of the response of the soil-structure system. The findings reported herein can be used for the interpretation of the results of soil-structure interaction analyses of nuclear plant structures that are performed with available computer codes
Robust Numerical Methods for Nonlinear Wave-Structure Interaction in a Moving Frame of Reference
DEFF Research Database (Denmark)
Kontos, Stavros; Lindberg, Ole
This project is focused on improving the state of the art for predicting the interaction between nonlinear ocean waves and marine structures. To achieve this goal, a flexible order finite difference potential flow solver has been extended to calculate for fully nonlinear wave-structure interaction...
Investigating the interaction of x-ray free electron laser radiation with grating structure
Gaudin, J.; Ozkan, C.; Chalupsky, J.; Bajt, S.; Burian, T.; Vysin, L.; Coppola, N.; Farahani, S. D.; Chapman, H. N.; Galasso, G.; Hajkova, V.; Harmand, M.; Juha, L.; Jurek, M.; Loch, R. A.; Möller, S.; Nagasono, M.; Stormer, M.; Sinn, H.; Saksl, K.; Sobierajski, R.; Schulz, J.; Sovak, P.; Toleikis, S.; Tiedtke, K.; Tschentscher, T.; Krzywinski, J.
2012-01-01
The interaction of free electron laser pulses with grating structure is investigated using 4.6 +/- 0.1 nm radiation at the FLASH facility in Hamburg. For fluences above 63.7 +/- 8.7 mJ/cm(2), the interaction triggers a damage process starting at the edge of the grating structure as evidenced by
Ammenwerth, Elske; Hackl, Werner O
2017-01-01
Learning as a constructive process works best in interaction with other learners. Support of social interaction processes is a particular challenge within online learning settings due to the spatial and temporal distribution of participants. It should thus be carefully monitored. We present structural network analysis and related indicators to analyse and visualize interaction patterns of participants in online learning settings. We validate this approach in two online courses and show how the visualization helps to monitor interaction and to identify activity profiles of learners. Structural network analysis is a feasible approach for an analysis of the intensity and direction of interaction in online learning settings.
Dynamic analysis of structures with solid-fluid interaction
International Nuclear Information System (INIS)
Nahavandi, A.N.; Pedrido, R.R.; Cloud, R.L.
1977-01-01
This study develops a finite element model for interaction between an elastic solid and fluid medium (flow-induced vibrations in nuclear reactor components). Plane triangular finite elements have been used separately for fluid, solid, and solid-fluid continuua and the equivalent mass, damping, and stiffness matrices and interaction load arrays for all elements are derived and assembled into global matrices. The global matrix differential equation of motion developed is solved in time to obtain the pressure and velocity distributions in the fluid, as well as the displacements in the solid. Two independent computer programs are used to obtain the dynamic solution. The first program is a finite element program developed for solid-fluid interaction studies. This program uses the modal superposition technique in which the eigenvalues and eigenvectors for the system are found and used to uncouple the equations. This approach allows an analytic solution in each integration time step. The second program is WECAN finite element program in which a new element library subroutine for solid-fluid interaction was incorporated. This program can employ a NASTRAN direct integration scheme based on a central difference formula for the acceleration and velocity terms and an implicit representation of the displacement term. This reduces the problem to a matrix equation whose right hand side is updated in every time step and is solved by a variation of the Gaussian elimination method known as the wave front technique. Results have been obtained for the case of water, between two flat elastic parallel plates, initially at rest and accelerated suddenly by applying a step pressure. The results obtained from the above-mentioned two independent finite element programs are in full agreement. This verification provides the confidence needed to initiate parametric studies. Both rigid wall (no solid-fluid interaction) and flexible wall (including solid-fluid interaction) cases were examined
Interactive comparison and remediation of collections of macromolecular structures.
Moriarty, Nigel W; Liebschner, Dorothee; Klei, Herbert E; Echols, Nathaniel; Afonine, Pavel V; Headd, Jeffrey J; Poon, Billy K; Adams, Paul D
2018-01-01
Often similar structures need to be compared to reveal local differences throughout the entire model or between related copies within the model. Therefore, a program to compare multiple structures and enable correction any differences not supported by the density map was written within the Phenix framework (Adams et al., Acta Cryst 2010; D66:213-221). This program, called Structure Comparison, can also be used for structures with multiple copies of the same protein chain in the asymmetric unit, that is, as a result of non-crystallographic symmetry (NCS). Structure Comparison was designed to interface with Coot(Emsley et al., Acta Cryst 2010; D66:486-501) and PyMOL(DeLano, PyMOL 0.99; 2002) to facilitate comparison of large numbers of related structures. Structure Comparison analyzes collections of protein structures using several metrics, such as the rotamer conformation of equivalent residues, displays the results in tabular form and allows superimposed protein chains and density maps to be quickly inspected and edited (via the tools in Coot) for consistency, completeness and correctness. © 2017 The Protein Society.
National Aeronautics and Space Administration — The overall objective of this proposal (Phases I and II) is to develop a robust and accurate solver for fluid-structure interaction computations capable of...
Thermal fluid-structure interaction - a few scaling considerations
International Nuclear Information System (INIS)
Dimitrov, B.; Schwan, H.
1984-01-01
Scaling laws for modeling of nuclear reactor systems primarily consider relations between thermalhydraulic parameters in the control volumes for the model and the prototype. Usually the influence of structural heat is neglected. This report describes, how scaling criteria are improved by parameters concerning structural heat, because during thermal transients there is a strong coupling between the thermalhydraulic system and the surrounding structures. Volumetric scaling laws are applied to a straight pipe of the primary loop of a pressurized water reactor (PWR). For the prototype pipe data of a KWU standard PWR with four loops are chosen. Theoretical studies and RELAP 5/MOD 1 calculations regarding the influence of structural heat on thermalhydraulic response of the fluid are performed. Recommendations are given for minimization of distortions due to influence of structural heat between model and prototype. (orig.) [de
International Nuclear Information System (INIS)
Ma, D.C.; Shin, Y.S.; Brochard, D.; Fujita, K.
1994-01-01
This volume is comprised of papers presented in two symposia at the 1994 ASME Pressure Vessels and Piping Conference. These sessions, sponsored by the Fluid-Structure Interaction and Seismic Engineering Technical Committees, provided a forum for the discussion of recent advances in sloshing, fluid-structure interaction, and structural dynamics produced by high energy excitations. The papers presented at the four technical sessions on Sloshing and Fluid-Structure Interaction represent a broad spectrum of fluid-structure systems: sloshing, fluid-structure interaction, and dynamic and seismic response of various fluid-structure systems such as reactor components, liquid storage tanks, submerged structures and piping systems, etc. The paper presented at the session on Structural Dynamics Produced by High-Energy Excitations cover underwater explosion effects on submerged structures, bubble loading phenomena, finite element mesh refinements on failure predictions, penetration and impact problems, and dynamic design of blast containment vessels. Also included are numerical analysis, design, and testing to understand difficult transient response phenomena. Separate abstracts were prepared for 24 papers in this volume
3D, parallel fluid-structure interaction code
CSIR Research Space (South Africa)
Oxtoby, Oliver F
2011-01-01
Full Text Available The authors describe the development of a 3D parallel Fluid–Structure–Interaction (FSI) solver and its application to benchmark problems. Fluid and solid domains are discretised using and edge-based finite-volume scheme for efficient parallel...
Interacting with molecular structures : user performance versus system complexity
Liere, van R.; Martens, J.B.; Kok, A.J.F.; van Tienen, M.H.A.; Blach, R.; Kjems, E.
2005-01-01
Effective interaction in a virtual environment requires that the user can adequately judge the spatial relationships between the objects in a 3D scene. In order to accomplish adequate depth perception, existing virtual environments create useful perceptual cues through stereoscopy, motion parallax
Effects of Sibling Structure and Interaction on Children's Categorization Style
Cicirelli, Victor G.
1973-01-01
One hundred sixty sibling pairs from two child families were sampled for sibling interaction behaviors as they relate to measures of categorization style. The study provides additional evidence of the importance of a child's siblings to his cognitive development. (Editor/RK)
Structural interaction of novel dendrimer and subunits with water
African Journals Online (AJOL)
Preferred Customer
interaction study with solvents are essential [4-6] and several subunits are used for .... slowed down the viscous flow with higher excess limiting viscosities of the 2,4,6- ..... Practical Organic Chemistry, 5th ed.; Wiley: New York; 1989; p 300. 14.
Soil Structure Interaction Effect on High Rise and Low Rise Buildings
Divya Pathak; PAresh H. SHAH
2000-01-01
Effect of supporting soil on the response of structure has been analyzed in the present study. A low rise (G+ 5 storey) and a high rise (G+12 storey) building has been taken for the analysis. For both type of buildings, the response of building with and without consideration of soil structure interaction effect has been compared.Without interaction case is the case in which ends of the structure are assumed to be fixed while in interaction case, structure is assumed to be...
Flow-Structural Interaction in Solid Rocket Motors
National Research Council Canada - National Science Library
Murdock, John
2004-01-01
.... The static test failure of the Titan solid rocket motor upgrade (SRMU) that occurred on 1 April, 1991, demonstrated the importance of flow-structural modeling in the design of large, solid rocket motors...
Density functional study of molecular interactions in secondary structures of proteins.
Takano, Yu; Kusaka, Ayumi; Nakamura, Haruki
2016-01-01
Proteins play diverse and vital roles in biology, which are dominated by their three-dimensional structures. The three-dimensional structure of a protein determines its functions and chemical properties. Protein secondary structures, including α-helices and β-sheets, are key components of the protein architecture. Molecular interactions, in particular hydrogen bonds, play significant roles in the formation of protein secondary structures. Precise and quantitative estimations of these interactions are required to understand the principles underlying the formation of three-dimensional protein structures. In the present study, we have investigated the molecular interactions in α-helices and β-sheets, using ab initio wave function-based methods, the Hartree-Fock method (HF) and the second-order Møller-Plesset perturbation theory (MP2), density functional theory, and molecular mechanics. The characteristic interactions essential for forming the secondary structures are discussed quantitatively.
Competition for vitamin B1 (thiamin) structures numerous ecological interactions.
Kraft, Clifford E; Angert, Esther R
2017-06-01
Thiamin (vitamin B1) is a cofactor required for essential biochemical reactions in all living organisms, yet free thiamin is scarce in the environment. The diversity of biochemical pathways involved in the acquisition, degradation, and synthesis of thiamin indicates that organisms have evolved numerous ecological strategies for meeting this nutritional requirement. In this review we synthesize information from multiple disciplines to show how the complex biochemistry of thiamin influences ecological outcomes of interactions between organisms in environments ranging from the open ocean and the Australian outback to the gastrointestinal tract of animals. We highlight population and ecosystem responses to the availability or absence of thiamin. These include widespread mortality of fishes, birds, and mammals, as well as the thiamin-dependent regulation of ocean productivity. Overall, we portray thiamin biochemistry as the foundation for molecularly mediated ecological interactions that influence survival and abundance of a vast array of organisms.
Electron-lattice Interaction and Nonlinear Excitations in Cuprate Structures
International Nuclear Information System (INIS)
Paulsen, J.; Eschrig, H.; Drechsler, S.L.; Malek, J.
1995-01-01
A low temperature lattice modulation of the chains of the YBa 2 Cu 3 O 7 is considered by deriving a Hamiltonian of electron-lattice interaction from density-functional calculations for deformed lattice and solving it for the groundstate. Hubbard-type Coulomb interaction is included. The obtained groundstate is a charge-density-wave state with a pereodicity of four lattice constants and a gap for one-electron excitations of about 1eV, sensitively depending on parameters of the Hamiltonian. There are lots of polaronic and solitonic excitations with formation energies deep in the gap, which can pin the Fermi level and thus produce again metallicity of the chain. They might also contribute to pairing of holes in adjacent CuO 2 -planes. (author)
Heavy flavour decays and the structure of weak interactions
International Nuclear Information System (INIS)
Bigi, I.
1984-01-01
The so-called Standard Model has been developed describing the electro-weak interactions by an SU(2) L xU(1) gauge theory the community's almost unanimous choice of the candidate theory for the strong interactions is QCD based on an SU(3) gauge theory. It is very instructive to recall the similarities and differences of these two theoretical frameworks. Both are based on non-abelian gauge theories with spin -1/2 matter fields and spin -1 radiation fields the latter being the carriers of the forces. Beyond this basic correspondence there are however crucial differences which I sketch under the headings ''computational tools'' and ''predictive power''; there exist of course correlations between these two items. (orig./HSI)
Flow-structure-seabed interactions in coastal and marine environments
DEFF Research Database (Denmark)
Sumer, B. Mutlu
2014-01-01
Flow–structure–seabed interaction in coastal and marine environments is a rapidly growing area of research and applications. In this vision paper, this area is discussed with a view of identifying its state of the art and current research challenges. The discussion draws attention to key issues......, among other areas, as an emerging branch of Marine Civil Engineering. Predictions of the field development for the forthcoming years are also briefly outlined....
Industry interactions of the electronic structure research community in Europe
Goldbeck, Gerhard
2014-01-01
This report explores the interactions of the academic Psi-k community with industry. The evidence presented is mainly based on a semi-quantitative survey and interviews of network members. All Psi-k board, working group and advisory group members, a total of about 120 people were invited to take part in the study, and 40 people responded, representing more than 400 scientists from 33 different institutions in 12 European countries. 90% of respondents work with industry. Main industry sectors ...
Nuclear structure calculations in the dynamic-interaction propagator approach
International Nuclear Information System (INIS)
Engelbrecht, C.A.; Hahne, F.J.W.; Heiss, W.D.
1978-01-01
The dynamic-interaction propagator approach provides a natural method for the handling of energy-dependent effective two-body interactions induced by collective excitations of a many-body system. In this work this technique is applied to the calculation of energy spectra and two-particle strengths in mass-18 nuclei. The energy dependence is induced by the dynamic exchange of the lowest 3 - octupole phonon in O 16 , which is described within a normal static particle-hole RPA. This leads to poles in the two-body self-energy, which can be calculated if other fermion lines are restricted to particle states. The two-body interaction parameters are chosen to provide the correct phonon energy and reasonable negative-parity mass-17 and positive-parity mass-18 spectra. The fermion lines must be dressed consistently with the same exchange phonon to avoid redundant solutions or ghosts. The negative-parity states are then calculated in a parameter-free way which gives good agreement with the observed spectra [af
Prediction of protein–protein interactions: unifying evolution and structure at protein interfaces
International Nuclear Information System (INIS)
Tuncbag, Nurcan; Gursoy, Attila; Keskin, Ozlem
2011-01-01
The vast majority of the chores in the living cell involve protein–protein interactions. Providing details of protein interactions at the residue level and incorporating them into protein interaction networks are crucial toward the elucidation of a dynamic picture of cells. Despite the rapid increase in the number of structurally known protein complexes, we are still far away from a complete network. Given experimental limitations, computational modeling of protein interactions is a prerequisite to proceed on the way to complete structural networks. In this work, we focus on the question 'how do proteins interact?' rather than 'which proteins interact?' and we review structure-based protein–protein interaction prediction approaches. As a sample approach for modeling protein interactions, PRISM is detailed which combines structural similarity and evolutionary conservation in protein interfaces to infer structures of complexes in the protein interaction network. This will ultimately help us to understand the role of protein interfaces in predicting bound conformations
Use of Lanczos vectors in fluid/structure interaction problems
International Nuclear Information System (INIS)
Jeans, R.; Mathews, I.C.
1992-01-01
The goals of any numerical computational technique used for the solution of structural acoustics problems in the exterior infinite domain should be of accuracy with rapid convergence, robustness, and computational efficiency. A computer program has been developed to achieve each of these three goals. Accuracy and robustness in the numerical representation of the integral equations used to represent the infinite fluid was attained through the use of boundary element implementations of the surface Helmholtz integral equations. The computational efficiency was resolved through the use of Lanczos vectors to model the deformation characteristics of the structure. The authors have developed collocation and variational techniques to overcome the difficulties previously encountered in the numerical implementation of the hypersingular integral operator. The Cauchy singularity present in the integral formulation is made numerically amenable through the use of tangential derivatives in both the collocation and variational techniques. The variational approach has the advantage that the resulting added fluid mass term is symmetric and combines efficiently with a finite element approximation of the structural elastic response. Several different strategies making use of the Lanczos vectors have been investigated. The first involved the use of Lanczos vectors solely to characterize the structural response. This reduced form of the structural dynamical matrix was then substituted back into a Burton and Miller formulation of the acoustic problem. The second strategy investigated involved forming the complex Lanzcos vectors of the dynamical matrix formed from the addition of a symmetrical added fluid matrix to the structural mass matrix. The size of resultant matrix equation set solved at each frequency for this strategy is determined by the number of Lanczos vectors used. 19 refs., 10 figs., 2 tabs
Description of a method for computing fluid-structure interaction
International Nuclear Information System (INIS)
Gantenbein, F.
1982-02-01
A general formulation allowing computation of structure vibrations in a dense fluid is described. It is based on fluid modelisation by fluid finite elements. For each fluid node are associated two variables: the pressure p and a variable π defined as p=d 2 π/dt 2 . Coupling between structure and fluid is introduced by surface elements. This method is easy to introduce in a general finite element code. Validation was obtained by analytical calculus and tests. It is widely used for vibrational and seismic studies of pipes and internals of nuclear reactors some applications are presented [fr
Ngamkhanong, Chayut; Kaewunruen, Sakdirat; Baniotopoulos, Charalampos; Papaelias, Mayorkinos
2017-10-01
Nowadays, the electric train becomes one of the efficient railway systems that are lighter, cleaner, quieter, cheaper and faster than a conventional train. Overhead line equipment (OHLE), which supplies electric power to the trains, is designed on the principle of overhead wires placed over the railway track. The OHLE is supported by mast structure which located at the lineside along the track. Normally, mast structure is a steel column or truss structure which supports the overhead wire carrying the power. Due to the running train and severe periodic force, such as an earthquake, in surrounding area may cause damage to the OHLE structure especially mast structure which leads to the failure of the electrical system. The mast structure needs to be discussed in order to resist the random forces. Due to the vibration effect, the natural frequencies of the structure are necessary. This is because when the external applied force occurs within a range of frequency of the structure, resonance effect can be expected which lead to the large oscillations and deflections. The natural frequency of a system is dependent only on the stiffness of the structure and the mass which participates with the structure, including self-weight. The modal analysis is used in order to calculate the mode shapes and natural frequencies of the mast structure during free vibration. A mast structure with varying rotational soil stiffness is used to observe the influence of soil-structure action. It is common to use finite element analysis to perform a modal analysis. This paper presents the fundamental mode shapes, natural frequencies and crossing phenomena of three-dimensional mast structure considering soil-structure interaction. The sensitivity of mode shapes to the variation of soil-structure interaction is discussed. The outcome of this study will improve the understanding of the fundamental dynamic behaviour of the mast structure which supports the OHLE. Moreover, this study will be a
Modeling turbulence structure. Chemical kinetics interaction in turbulent reactive flows
Energy Technology Data Exchange (ETDEWEB)
Magnussen, B F [The Norwegian Univ. of Science and Technology, Trondheim (Norway)
1998-12-31
The challenge of the mathematical modelling is to transfer basic physical knowledge into a mathematical formulation such that this knowledge can be utilized in computational simulation of practical problems. The combustion phenomena can be subdivided into a large set of interconnected phenomena like flow, turbulence, thermodynamics, chemical kinetics, radiation, extinction, ignition etc. Combustion in one application differs from combustion in another area by the relative importance of the various phenomena. The difference in fuel, geometry and operational conditions often causes the differences. The computer offers the opportunity to treat the individual phenomena and their interactions by models with wide operational domains. The relative magnitude of the various phenomena therefore becomes the consequence of operational conditions and geometry and need not to be specified on the basis of experience for the given problem. In mathematical modelling of turbulent combustion, one of the big challenges is how to treat the interaction between the chemical reactions and the fluid flow i.e. the turbulence. Different scientists adhere to different concepts like the laminar flamelet approach, the pdf approach of the Eddy Dissipation Concept. Each of these approaches offers different opportunities and problems. All these models are based on a sound physical basis, however none of these have general validity in taking into consideration all detail of the physical chemical interaction. The merits of the models can only be judged by their ability to reproduce physical reality and consequences of operational and geometric conditions in a combustion system. The presentation demonstrates and discusses the development of a coherent combustion technology for energy conversion and safety based on the Eddy Dissipation Concept by Magnussen. (author) 30 refs.
Modeling turbulence structure. Chemical kinetics interaction in turbulent reactive flows
Energy Technology Data Exchange (ETDEWEB)
Magnussen, B.F. [The Norwegian Univ. of Science and Technology, Trondheim (Norway)
1997-12-31
The challenge of the mathematical modelling is to transfer basic physical knowledge into a mathematical formulation such that this knowledge can be utilized in computational simulation of practical problems. The combustion phenomena can be subdivided into a large set of interconnected phenomena like flow, turbulence, thermodynamics, chemical kinetics, radiation, extinction, ignition etc. Combustion in one application differs from combustion in another area by the relative importance of the various phenomena. The difference in fuel, geometry and operational conditions often causes the differences. The computer offers the opportunity to treat the individual phenomena and their interactions by models with wide operational domains. The relative magnitude of the various phenomena therefore becomes the consequence of operational conditions and geometry and need not to be specified on the basis of experience for the given problem. In mathematical modelling of turbulent combustion, one of the big challenges is how to treat the interaction between the chemical reactions and the fluid flow i.e. the turbulence. Different scientists adhere to different concepts like the laminar flamelet approach, the pdf approach of the Eddy Dissipation Concept. Each of these approaches offers different opportunities and problems. All these models are based on a sound physical basis, however none of these have general validity in taking into consideration all detail of the physical chemical interaction. The merits of the models can only be judged by their ability to reproduce physical reality and consequences of operational and geometric conditions in a combustion system. The presentation demonstrates and discusses the development of a coherent combustion technology for energy conversion and safety based on the Eddy Dissipation Concept by Magnussen. (author) 30 refs.
Soil-structure interaction analysis by Green function
International Nuclear Information System (INIS)
Muto, Kiyoshi; Kobayashi, Toshio; Nakahara, Mitsuharu.
1985-01-01
Using the method of discretized Green function which had been suggested by the authors, the parametric study of the effects of base mat foundation thickness and soil stiffness were conducted. There was no upper structure effects from the response and reaction stress of the soil by employing different base mat foundation thicknesses. However, the response stress of base mat itself had considerable effect on the base mat foundation stress. The harder the soil, became larger accelerations, and smaller displacements on the upper structure. The upper structure lines of force were directed onto the soil. In the case of soft soil, the reaction soil stress were distributed evenly over the entire reactor building area. Common characteristics of all cases, in-plane shear deformation of the upper floor occured and in-plane acceleration and displacement at the center of the structure become larger. Also, the soil stresses around the shield wall of the base mat foundation became large cecause of the effect of the shield wall bending. (Kubozono, M.)
Thermal-Interaction Matrix For Resistive Test Structure
Buehler, Martin G.; Dhiman, Jaipal K.; Zamani, Nasser
1990-01-01
Linear mathematical model predicts increase in temperature in each segment of 15-segment resistive structure used to test electromigration. Assumption of linearity based on fact: equations that govern flow of heat are linear and coefficients in equations (heat conductivities and capacities) depend only weakly on temperature and considered constant over limited range of temperature.
Structural differences of xylans affect their interaction with cellulose
Kabel, M.A.; Borne, van den H.; Vincken, J.P.; Voragen, A.G.J.; Schols, H.A.
2007-01-01
The affinity of xylan to cellulose is an important aspect of many industrial processes, e.g. production of cellulose, paper making and bio-ethanol production. However, little is known about the adsorption of structurally different xylans to cellulose. Therefore, the adsorption of various xylans to
Interactions of structural defects with metallic impurities in multicrystalline silicon
International Nuclear Information System (INIS)
McHugo, S.A.; Thompson, A.C.; Hieslmair, H.
1997-01-01
Multicrystalline silicon is one of the most promising materials for terrestrial solar cells. It is critical to getter impurities from the material as well as inhibit contamination during growth and processing. Standard processing steps such as, phosphorus in-diffusion for p-n junction formation and aluminum sintering for backside ohmic contact fabrication, intrinsically possess gettering capabilities. These processes have been shown to improve L n values in regions of multicrystalline silicon with low structural defect densities but not in highly dislocated regions. Recent Deep Level Transient Spectroscopy (DLTS) results indirectly reveal higher concentrations of iron in highly dislocated regions while further work suggests that the release of impurities from structural defects, such as dislocations, is the rate limiting step for gettering in multicrystalline silicon. The work presented here directly demonstrates the relationship between metal impurities, structural defects and solar cell performance in multicrystalline silicon. Edge-defined Film-fed Growth (EFG) multicrystalline silicon in the as-grown state and after full solar cell processing was used in this study. Standard solar cell processing steps were carried out at ASE Americas Inc. Metal impurity concentrations and distributions were determined by use of the x-ray fluorescence microprobe (beamline 10.3.1) at the Advanced Light Source, Lawrence Berkeley National Laboratory. The sample was at atmosphere so only elements with Z greater than silicon could be detected, which includes all metal impurities of interest. Structural defect densities were determined by preferential etching and surface analysis using a Scanning Electron Microscope (SEM) in secondary electron mode. Mapped areas were exactly relocated between the XRF and SEM to allow for direct comparison of impurity and structural defect distributions
Interactive extraction of neural structures with user-guided morphological diffusion
Yong Wan,; Otsuna, H.; Chi-Bin Chien,; Hansen, C.
2012-01-01
Extracting neural structures with their fine details from confocal volumes is essential to quantitative analysis in neurobiology research. Despite the abundance of various segmentation methods and tools, for complex neural structures, both manual and semi-automatic methods are ine ective either in full 3D or when user interactions are restricted to 2D slices. Novel interaction techniques and fast algorithms are demanded by neurobiologists to interactively and intuitively extract neural structures from confocal data. In this paper, we present such an algorithm-technique combination, which lets users interactively select desired structures from visualization results instead of 2D slices. By integrating the segmentation functions with a confocal visualization tool neurobiologists can easily extract complex neural structures within their typical visualization workflow.
Interactive extraction of neural structures with user-guided morphological diffusion
Yong Wan,
2012-10-01
Extracting neural structures with their fine details from confocal volumes is essential to quantitative analysis in neurobiology research. Despite the abundance of various segmentation methods and tools, for complex neural structures, both manual and semi-automatic methods are ine ective either in full 3D or when user interactions are restricted to 2D slices. Novel interaction techniques and fast algorithms are demanded by neurobiologists to interactively and intuitively extract neural structures from confocal data. In this paper, we present such an algorithm-technique combination, which lets users interactively select desired structures from visualization results instead of 2D slices. By integrating the segmentation functions with a confocal visualization tool neurobiologists can easily extract complex neural structures within their typical visualization workflow.
Numerical study of coupled fluid-structure interaction for combustion system
Khatir, Z.; Pozarlik, Artur Krzysztof; Cooper, R.K.; Watterson, J.W.; Kok, Jacobus B.W.
2007-01-01
The computation of fluid–structure interaction (FSI) problems requires solving simultaneously the coupled fluid and structure equations. A partitioned approach using a volume spline solution procedure is applied for the coupling of fluid dynamics and structural dynamics codes. For comparative study,
Structural interaction and functional regulation of polycystin-2 by filamin.
Directory of Open Access Journals (Sweden)
Qian Wang
Full Text Available Filamins are important actin cross-linking proteins implicated in scaffolding, membrane stabilization and signal transduction, through interaction with ion channels, receptors and signaling proteins. Here we report the physical and functional interaction between filamins and polycystin-2, a TRP-type cation channel mutated in 10-15% patients with autosomal dominant polycystic kidney disease. Yeast two-hybrid and GST pull-down experiments demonstrated that the C-termini of filamin isoforms A, B and C directly bind to both the intracellular N- and C-termini of polycystin-2. Reciprocal co-immunoprecipitation experiments showed that endogenous polycystin-2 and filamins are in the same complexes in renal epithelial cells and human melanoma A7 cells. We then examined the effect of filamin on polycystin-2 channel function by electrophysiology studies with a lipid bilayer reconstitution system and found that filamin-A substantially inhibits polycystin-2 channel activity. Our study indicates that filamins are important regulators of polycystin-2 channel function, and further links actin cytoskeletal dynamics to the regulation of this channel protein.
Soil-structure interaction analysis of NPP containments: substructure and frequency domain methods
International Nuclear Information System (INIS)
Venancio-Filho, F.; Almeida, M.C.F.; Ferreira, W.G.; De Barros, F.C.P.
1997-01-01
Substructure and frequency domain methods for soil-structure interaction are addressed in this paper. After a brief description of mathematical models for the soil and of excitation, the equations for dynamic soil-structure interaction are developed for a rigid surface foundation and for an embedded foundation. The equations for the frequency domain analysis of MDOF systems are provided. An example of soil-structure interaction analysis with frequency-dependent soil properties is given and examples of identification of foundation impedance functions and soil properties are presented. (orig.)
Influence of ground water on soil-structure interaction
International Nuclear Information System (INIS)
Costantino, C.J.; Graves, H.L.
1987-01-01
The basic problem consists of a liner flexible structure situated at or near the surface of a soil half-space. In keeping with typical small strain seismic analyses, the soil skeleton is represented as a linear medium in which all potential nonlinearities are at most lumped together into an equivalent hysteretic damping modulus. In addition, the ground water level is located at some depth relatively close to the structure, and in a position to impact on the seismic response of the facility. In order to estimate the response of this oil-water system, the two-phased medium formulation of Biot was used to treat the response of the solids and water as two separate linear media, coupled together through soil permeability and volume effects. (orig./HP)
Interactive Reliability-Based Optimization of Structural Systems
DEFF Research Database (Denmark)
Pedersen, Claus
In order to introduce the basic concepts within the field of reliability-based structural optimization problems, this chapter is devoted to a brief outline of the basic theories. Therefore, this chapter is of a more formal nature and used as a basis for the remaining parts of the thesis. In section...... 2.2 a general non-linear optimization problem and corresponding terminology are presented whereupon optimality conditions and the standard form of an iterative optimization algorithm are outlined. Subsequently, the special properties and characteristics concerning structural optimization problems...... are treated in section 2.3. With respect to the reliability evalutation, the basic theory behind a reliability analysis and estimation of probability of failure by the First-Order Reliability Method (FORM) and the iterative Rackwitz-Fiessler (RF) algorithm are considered in section 2.5 in which...
Interaction fluide-structure souple et legere, application aux voiliers
Durand , Mathieu
2012-01-01
This thesis, devoted to simulations of sailboat sail, was initiated by K-Epsilon, acompany specialized in numerical computations for naval hydrodynamics, IRENav, the Frenchnaval academy laboratory and LHEEA from Ecole Centrale Nantes. In this context a finiteelement program was developed dedicated to computing sail membranes and sailboat structures.The program was coupled with an inviscid fluid solver. A more detailed modeling of the flow andinteraction was realized by implementing a coupling...
Minimal metabolic pathway structure is consistent with associated biomolecular interactions
DEFF Research Database (Denmark)
Bordbar, Aarash; Nagarajan, Harish; Lewis, Nathan E.
2014-01-01
Pathways are a universal paradigm for functionally describing cellular processes. Even though advances in high-throughput data generation have transformed biology, the core of our biological understanding, and hence data interpretation, is still predicated on human-defined pathways. Here, we......, effectively doubling the known regulatory roles for Nac and MntR. This study suggests an underlying and fundamental principle in the evolutionary selection of pathway structures; namely, that pathways may be minimal, independent, and segregated....
Soil-structure interaction effects on high level waste tanks
International Nuclear Information System (INIS)
Miller, C.A.; Costantino, C.J.; Heymsfeld, E.
1991-01-01
High Level Waste Tanks consist of steel tanks located in concrete vaults which are usually completely embedded in the soil. Many of these tanks are old and were designed to seismic standards which are not compatible with current requirements. The objective if this paper is to develop simple methods of modeling SSI effects for such structures and to obtain solutions for a range of parameters that can be used to identify significant aspects of the problem
International Nuclear Information System (INIS)
Chen, R.C.; Maryak, M.E.; Mulliken, J.S.
1993-01-01
A completely buried structure with a heavily loaded roof system has been analyzed for seismic forces. The seismic input was a site-specific spectrum shape anchored at 0.2g zero period acceleration in the horizontal directions, and the vertical input was prescribed at two thirds of the horizontal input. Models of the structure were developed to account for the flexibility of the base mat, walls, and roof, and were analyzed for the above seismic input with uncertainties in the soil properties considered. The results indicate that horizontal rigid body soil-structure interaction effects are negligible and the seismic amplifications are dominated by the soil-structure system natural frequencies. In addition, the analysis shows that the flexibility of the structure and soil-structure interaction cause considerable amplification of the vertical structural response of the facility's roof system. Finally it was shown that the computer program SASSI can be used to predict the soil-structure interaction responses of a completely buried structure
Artificial ferroic systems: novel functionality from structure, interactions and dynamics
International Nuclear Information System (INIS)
Heyderman, L J; Stamps, R L
2013-01-01
Lithographic processing and film growth technologies are continuing to advance, so that it is now possible to create patterned ferroic materials consisting of arrays of sub-1 μm elements with high definition. Some of the most fascinating behaviour of these arrays can be realised by exploiting interactions between the individual elements to create new functionality. The properties of these artificial ferroic systems differ strikingly from those of their constituent components, with novel emergent behaviour arising from the collective dynamics of the interacting elements, which are arranged in specific designs and can be activated by applying magnetic or electric fields. We first focus on artificial spin systems consisting of arrays of dipolar-coupled nanomagnets and, in particular, review the field of artificial spin ice, which demonstrates a wide range of fascinating phenomena arising from the frustration inherent in particular arrangements of nanomagnets, including emergent magnetic monopoles, domains of ordered macrospins, and novel avalanche behaviour. We outline how demagnetisation protocols have been employed as an effective thermal anneal in an attempt to reach the ground state, comment on phenomena that arise in thermally activated systems and discuss strategies for selectively generating specific configurations using applied magnetic fields. We then move on from slow field and temperature driven dynamics to high frequency phenomena, discussing spinwave excitations in the context of magnonic crystals constructed from arrays of patterned magnetic elements. At high frequencies, these arrays are studied in terms of potential applications including magnetic logic, linear and non-linear microwave optics, and fast, efficient switching, and we consider the possibility to create tunable magnonic crystals with artificial spin ice. Finally, we discuss how functional ferroic composites can be incorporated to realise magnetoelectric effects. Specifically, we discuss
Artificial ferroic systems: novel functionality from structure, interactions and dynamics.
Heyderman, L J; Stamps, R L
2013-09-11
Lithographic processing and film growth technologies are continuing to advance, so that it is now possible to create patterned ferroic materials consisting of arrays of sub-1 μm elements with high definition. Some of the most fascinating behaviour of these arrays can be realised by exploiting interactions between the individual elements to create new functionality. The properties of these artificial ferroic systems differ strikingly from those of their constituent components, with novel emergent behaviour arising from the collective dynamics of the interacting elements, which are arranged in specific designs and can be activated by applying magnetic or electric fields. We first focus on artificial spin systems consisting of arrays of dipolar-coupled nanomagnets and, in particular, review the field of artificial spin ice, which demonstrates a wide range of fascinating phenomena arising from the frustration inherent in particular arrangements of nanomagnets, including emergent magnetic monopoles, domains of ordered macrospins, and novel avalanche behaviour. We outline how demagnetisation protocols have been employed as an effective thermal anneal in an attempt to reach the ground state, comment on phenomena that arise in thermally activated systems and discuss strategies for selectively generating specific configurations using applied magnetic fields. We then move on from slow field and temperature driven dynamics to high frequency phenomena, discussing spinwave excitations in the context of magnonic crystals constructed from arrays of patterned magnetic elements. At high frequencies, these arrays are studied in terms of potential applications including magnetic logic, linear and non-linear microwave optics, and fast, efficient switching, and we consider the possibility to create tunable magnonic crystals with artificial spin ice. Finally, we discuss how functional ferroic composites can be incorporated to realise magnetoelectric effects. Specifically, we discuss
Role of experiments in soil-structure interaction methodology verification
International Nuclear Information System (INIS)
Srinivasan, M.G.; Kot, C.A.; Hsieh, B.J.
1986-01-01
Different kinds of experimental data may be useful for partial or full verification of SSI analysis methods. The great bulk of existing data comes from earthquake records and dynamic testing of as-built structures. However, much of this data may not be suitable for the present purpose as the measurement locations were not selected with the verification of SSI analysis in mind and hence are too few in number or inappropriate in character. Data from scale model testing that include the soil in the model - both in-situ and laboratory - are relatively scarce. If the difficulty in satisfying the requirements of similitude laws on the one hand and simulating realistic soil behavior on the other can be resolved, scale model testing may generate very useful data for relatively low cost. The current NRC sponsored programs are expected to generate data very useful for verifying analysis methods for SSI. A systematic effort to inventory, evaluate and classify existing data is first necessary. This effort would probably show that more data is needed for the better understanding of SSI aspects such as spatial variation of ground motion and the related issue of foundation input motion, and soil stiffness. Collection of response data from in-structure and free field (surface and downhole) through instrumentation of selected as-built structures in seismically active regions may be the most efficient way to obtain the needed data. Augmentation of this data from properly designed scale model tests should also be considered
Assessment of seismic wave effects on soil-structure interaction
International Nuclear Information System (INIS)
Bernreuter, D.L.
1977-03-01
It is normally assumed in the seismic analysis of structures that the free-field motion which is used as input is the same for all points on a given level beneath the foundation mat. This represents a simplification, as not all particles of soil describe the same motion simultaneously. As the foundation mat of the structure is rigid in the horizontal direction, it will tend to average the ground motion. Abandoning the assumption of the uniformity of the input motion may lead to a reduction of the translational motion which a foundation mat will experience, as the displacement components will cancel each other to a certain extent. This is of considerable interest for the design of nuclear power plants which are very stiff, large structures. To investigate these effects, the extremely complex phenomenon of the passage of a seismic wave has to be simplified considerably. It is the purpose of this paper to determine if wave passage effects can be determined from the simplified analyses currently used
Electron confinement in thin metal films. Structure, morphology and interactions
Energy Technology Data Exchange (ETDEWEB)
Dil, J.H.
2006-05-15
This thesis investigates the interplay between reduced dimensionality, electronic structure, and interface effects in ultrathin metal layers (Pb, In, Al) on a variety of substrates (Si, Cu, graphite). These layers can be grown with such a perfection that electron confinement in the direction normal to the film leads to the occurrence of quantum well states in their valence bands. These quantum well states are studied in detail, and their behaviour with film thickness, on different substrates, and other parameters of growth are used here to characterise a variety of physical properties of such nanoscale systems. The sections of the thesis deal with a determination of quantum well state energies for a large data set on different systems, the interplay between film morphology and electronic structure, and the influence of substrate electronic structure on their band shape; finally, new ground is broken by demonstrating electron localization and correlation effects, and the possibility to measure the influence of electron-phonon coupling in bulk bands. (orig.)
Interaction of light with hematite hierarchical structures: Experiments and simulations
Distaso, Monica; Zhuromskyy, Oleksander; Seemann, Benjamin; Pflug, Lukas; Mačković, Mirza; Encina, Ezequiel; Taylor, Robin Klupp; Müller, Rolf; Leugering, Günter; Spiecker, Erdmann; Peschel, Ulf; Peukert, Wolfgang
2017-03-01
Mesocrystalline particles have been recognized as a class of multifunctional materials with potential applications in different fields. However, the internal organization of nanocomposite mesocrystals and its influence on the final properties have not yet been investigated. In this paper, a novel strategy based on electrodynamic simulations is developed to shed light on how the internal structure of mesocrystals influences their optical properties. In a first instance, a unified design protocol is reported for the fabrication of hematite/PVP particles with different morphologies such as pseudo-cubes, rods-like and apple-like structures and controlled particle size distributions. The optical properties of hematite/PVP mesocrystals are effectively simulated by taking their aggregate and nanocomposite structure into consideration. The superposition T-Matrix approach accounts for the aggregate nature of mesocrystalline particles and validate the effective medium approximation used in the framework of the Mie theory and electromagnetic simulation such as Finite Element Method. The approach described in our paper provides the framework to understand and predict the optical properties of mesocrystals and more general, of hierarchical nanostructured particles.
Directory of Open Access Journals (Sweden)
Nifatova Olena M.
2017-04-01
Full Text Available The article is aimed at identifying contradictions and developing a compartmentalizing as to the interaction between integrated business structures, taking into consideration the branding approach to management. The main specific features and contradictions that arise in the process of integration in the domestic market of mergers and acquisitions have been allocated. The contradictions identified were systematized and substantiated at three economic levels: macro-, meso-, and microeconomic. A compartmentalizing of the business units interaction in a merge or an acquisition process has been proposed. This compartmentalizing takes account of the branding aspect through the introduction of «brands interaction» – cluster interaction, circular interaction, holding interaction, linear interaction, which enhances the scientific view of exploring the problem of business units interaction in the process of the formations becoming integrated. The development of a compartmentalizing as to the interaction between integrated business structures, taking into consideration the branding approach to management, would provide a more effective use of the fundamental nature of branding as synergistic force in terms of the system of integration of business structures at the current stage of development of the national economy. Further development of branding issues in this sphere will have a significant impact on the functioning of the integrated business structures with the participation of Ukrainian companies.
Seismic soil-structure interaction of foundations with large piles
International Nuclear Information System (INIS)
Zeevaert, L.
1996-01-01
In seismic regions with soft soil deposits subjected to ground surface subsidence, there is the necessity to support the weight of constructions on large diameter piles or piers hearing on deep firm strata. To justify the action of these elements working under flexo compression and shear, it is necessary to perform calculations of soil pile interaction from a practical engineering point of view and estimate the order of magnitude of the forces and displacements to which these elements will be subjected during the seismic action assigned to the foundation. In this paper we defined a pier as a large diameter pile constructed on site. Furthermore, in the seismic analysis it is necessary to evaluate the seismic pore water pressure to learn on the effective seismic soil stresses close to the ground surface. (author)
Accelerating Full Configuration Interaction Calculations for Nuclear Structure
International Nuclear Information System (INIS)
Yang, Chao; Sternberg, Philip; Maris, Pieter; Ng, Esmond; Sosonkina, Masha; Le, Hung Viet; Vary, James; Yang, Chao
2008-01-01
One of the emerging computational approaches in nuclear physics is the full configuration interaction (FCI) method for solving the many-body nuclear Hamiltonian in a sufficiently large single-particle basis space to obtain exact answers - either directly or by extrapolation. The lowest eigenvalues and corresponding eigenvectors for very large, sparse and unstructured nuclear Hamiltonian matrices are obtained and used to evaluate additional experimental quantities. These matrices pose a significant challenge to the design and implementation of efficient and scalable algorithms for obtaining solutions on massively parallel computer systems. In this paper, we describe the computational strategies employed in a state-of-the-art FCI code MFDn (Many Fermion Dynamics - nuclear) as well as techniques we recently developed to enhance the computational efficiency of MFDn. We will demonstrate the current capability of MFDn and report the latest performance improvement we have achieved. We will also outline our future research directions
Structural Analysis of ‘key’ Interactions in Functional RNA Molecules
Chawla, Mohit
2018-04-01
The main objective of the thesis is to carry out structural bioinformatics study along with usage of advanced quantum chemical methods to look at the structural stability and energetics of RNA building blocks. The main focus of the work described here lies on understanding the reasons behind the intrinsic stability of key interactions in nucleic acids. Crystal structures of RNA molecules exhibit fascinating variety of non-covalent interactions, which play an important role in maintaining the three dimensional structures. An accurate atomic level description of these interactions in the structural building blocks of RNA is a key to understand the structure-function relationship in these molecules. An effort has been made to link the conclusions drawn from quantum chemical computations on RNA base pairs in wide biochemical context of their occurrence in RNA structures. The initial attention was on the impact of natural and non-natural modifications of the nucleic acid bases on the structure and stability of base pairs that they are involved in. In the remaining sections we cover other molecular interactions shaping nucleic acids, as the interaction between ribose and the bases, and the fluoride sensing riboswitch system in order to investigate structure and dynamics of nucleic acids at the atomic level and to gain insight into the physical chemistry behind.
Soil-structure interaction effects on containment fragilities and floor response spectra statistics
International Nuclear Information System (INIS)
Pires, J.; Reich, M.; Chokshi, N.C.
1987-01-01
The probability-based method for the reliability evaluation of nuclear structures developed at Brookhaven National Laboratory (BNL) is extended to include soil-structure interaction effects. A reinforced concrete containment is analyzed in order to investigate the soil-structure interaction effects on: structural fragilities; floor response spectra statistics and acceleration response correlations. To include the effect of soil flexibility on the reliability assessment the following two step approach is used. In the first step, the lumped parameter method for soil-structure interaction analysis is used together with a stick model representation of the structure in order to obtain the motions of the foundation plate. These motions, which include both translations and rotations of the foundation plate, are expressed in terms of the power-spectral density of the free-field ground excitation and the transfer function of the total acceleration response of the foundation. The second step involves a detailed finite element model of the structure subjected to the interaction motions computed from step one. Making use of the structural model and interaction motion the reliability analysis method yields the limit stat probabilities and fragility data for the structure
Structural Analysis of ‘key’ Interactions in Functional RNA Molecules
Chawla, Mohit
2018-01-01
The main objective of the thesis is to carry out structural bioinformatics study along with usage of advanced quantum chemical methods to look at the structural stability and energetics of RNA building blocks. The main focus of the work described here lies on understanding the reasons behind the intrinsic stability of key interactions in nucleic acids. Crystal structures of RNA molecules exhibit fascinating variety of non-covalent interactions, which play an important role in maintaining the three dimensional structures. An accurate atomic level description of these interactions in the structural building blocks of RNA is a key to understand the structure-function relationship in these molecules. An effort has been made to link the conclusions drawn from quantum chemical computations on RNA base pairs in wide biochemical context of their occurrence in RNA structures. The initial attention was on the impact of natural and non-natural modifications of the nucleic acid bases on the structure and stability of base pairs that they are involved in. In the remaining sections we cover other molecular interactions shaping nucleic acids, as the interaction between ribose and the bases, and the fluoride sensing riboswitch system in order to investigate structure and dynamics of nucleic acids at the atomic level and to gain insight into the physical chemistry behind.
Implementing a Loosely Coupled Fluid Structure Interaction Finite Element Model in PHASTA
Pope, David
Fluid Structure Interaction problems are an important multi-physics phenomenon in the design of aerospace vehicles and other engineering applications. A variety of computational fluid dynamics solvers capable of resolving the fluid dynamics exist. PHASTA is one such computational fluid dynamics solver. Enhancing the capability of PHASTA to resolve Fluid-Structure Interaction first requires implementing a structural dynamics solver. The implementation also requires a correction of the mesh used to solve the fluid equations to account for the deformation of the structure. This results in mesh motion and causes the need for an Arbitrary Lagrangian-Eulerian modification to the fluid dynamics equations currently implemented in PHASTA. With the implementation of both structural dynamics physics, mesh correction, and the Arbitrary Lagrangian-Eulerian modification of the fluid dynamics equations, PHASTA is made capable of solving Fluid-Structure Interaction problems.
Unconventional Imaging Methods to Capture Transient Structures during Actomyosin Interaction
Directory of Open Access Journals (Sweden)
Eisaku Katayama
2018-05-01
Full Text Available Half a century has passed since the cross-bridge structure was recognized as the molecular machine that generates muscle tension. Despite various approaches by a number of scientists, information on the structural changes in the myosin heads, particularly its transient configurations, remains scant even now, in part because of their small size and rapid stochastic movements during the power stroke. Though progress in cryo-electron microscopy is eagerly awaited as the ultimate means to elucidate structural details, the introduction of some unconventional methods that provide high-contrast raw images of the target protein assemblies is quite useful, if available, to break the current impasse. Quick-freeze deep–etch–replica electron microscopy coupled with dedicated image analysis procedures, and high-speed atomic-force microscopy are two such candidates. We have applied the former to visualize actin-associated myosin heads under in vitro motility assay conditions, and found that they take novel configurations similar to the SH1–SH2-crosslinked myosin that we characterized recently. By incorporating biochemical and biophysical results, we have revised the cross-bridge mechanism to involve the new conformer as an important main player. The latter “microscopy” is unique and advantageous enabling continuous observation of various protein assemblies as they function. Direct observation of myosin-V’s movement along actin filaments revealed several unexpected behaviors such as foot-stomping of the leading head and unwinding of the coiled-coil tail. The potential contribution of these methods with intermediate spatial resolution is discussed.
Emergence of structural patterns out of synchronization in networks with competitive interactions
Assenza, Salvatore; Gutiérrez, Ricardo; Gómez-Gardeñes, Jesús; Latora, Vito; Boccaletti, Stefano
2011-09-01
Synchronization is a collective phenomenon occurring in systems of interacting units, and is ubiquitous in nature, society and technology. Recent studies have enlightened the important role played by the interaction topology on the emergence of synchronized states. However, most of these studies neglect that real world systems change their interaction patterns in time. Here, we analyze synchronization features in networks in which structural and dynamical features co-evolve. The feedback of the node dynamics on the interaction pattern is ruled by the competition of two mechanisms: homophily (reinforcing those interactions with other correlated units in the graph) and homeostasis (preserving the value of the input strength received by each unit). The competition between these two adaptive principles leads to the emergence of key structural properties observed in real world networks, such as modular and scale-free structures, together with a striking enhancement of local synchronization in systems with no global order.
International Nuclear Information System (INIS)
Carbonari, S.; Dezi, F.; Leoni, G.
2008-01-01
This paper presents a study on the seismic response of coupled wall-frame structures founded on piles. A complete soil-structure interaction analysis is carried out with reference to a case study. Three different soils and seven real accelerograms are considered. Local site response analyses are performed in order to evaluate the incoming free-field motion at different depths and the ground motion amplifications. A numerical model, accounting for the pile-soil-pile interaction and for material and radiation damping, is used to evaluate the impedance matrix and the foundation input motion. The domain decomposition technique is adopted to perform time-domain seismic analyses introducing Lumped Parameter Models to take into account the impedance of the soil-structure system. Applications show that the rocking phenomena affect the behaviour of the structure by changing the base shear distribution within the wall and the frame and by increasing the structural displacements
Structures in the Universe by Exact Methods: Formation, Evolution, Interactions
Bolejko, Krzysztof; Krasiński, Andrzej; Hellaby, Charles; Célérier, Marie-Noëlle
2009-10-01
As the structures in our Universe are mapped out on ever larger scales, and with increasing detail, the use of inhomogeneous models is becoming an essential tool for analyzing and understanding them. This book reviews a number of important developments in the application of inhomogeneous solutions of Einstein's field equations to cosmology. It shows how inhomogeneous models can be employed to study the evolution of structures such as galaxy clusters and galaxies with central black holes, and to account for cosmological observations like supernovae dimming, the cosmic microwave background, baryon acoustic oscillations or the dependence of the Hubble parameter on redshift within classical general relativity. Whatever 'dark matter' and 'dark energy' turn out to be, inhomogeneities exist on many scales and need to be investigated with all appropriate methods. This book is of great value to all astrophysicists and researchers working in cosmology, from graduate students to academic researchers. - Presents inhomogeneous cosmological models, allowing readers to familiarise themselves with basic properties of these models - Shows how inhomogeneous models can be used to analyse cosmological observations such as supernovae, cosmic microwave background, and baryon acoustic oscillations - Reviews important developments in the application of inhomogeneous solutions of Einstein's field equations to cosmology
Quasiparticle semiconductor band structures including spin-orbit interactions.
Malone, Brad D; Cohen, Marvin L
2013-03-13
We present first-principles calculations of the quasiparticle band structure of the group IV materials Si and Ge and the group III-V compound semiconductors AlP, AlAs, AlSb, InP, InAs, InSb, GaP, GaAs and GaSb. Calculations are performed using the plane wave pseudopotential method and the 'one-shot' GW method, i.e. G(0)W(0). Quasiparticle band structures, augmented with the effects of spin-orbit, are obtained via a Wannier interpolation of the obtained quasiparticle energies and calculated spin-orbit matrix. Our calculations explicitly treat the shallow semicore states of In and Ga, which are known to be important in the description of the electronic properties, as valence states in the quasiparticle calculation. Our calculated quasiparticle energies, combining both the ab initio evaluation of the electron self-energy and the vector part of the pseudopotential representing the spin-orbit effects, are in generally very good agreement with experimental values. These calculations illustrate the predictive power of the methodology as applied to group IV and III-V semiconductors.
Fluid-Structure Interaction Analysis of Ruptured Mitral Chordae Tendineae.
Toma, Milan; Bloodworth, Charles H; Pierce, Eric L; Einstein, Daniel R; Cochran, Richard P; Yoganathan, Ajit P; Kunzelman, Karyn S
2017-03-01
The chordal structure is a part of mitral valve geometry that has been commonly neglected or simplified in computational modeling due to its complexity. However, these simplifications cannot be used when investigating the roles of individual chordae tendineae in mitral valve closure. For the first time, advancements in imaging, computational techniques, and hardware technology make it possible to create models of the mitral valve without simplifications to its complex geometry, and to quickly run validated computer simulations that more realistically capture its function. Such simulations can then be used for a detailed analysis of chordae-related diseases. In this work, a comprehensive model of a subject-specific mitral valve with detailed chordal structure is used to analyze the distinct role played by individual chordae in closure of the mitral valve leaflets. Mitral closure was simulated for 51 possible chordal rupture points. Resultant regurgitant orifice area and strain change in the chordae at the papillary muscle tips were then calculated to examine the role of each ruptured chorda in the mitral valve closure. For certain subclassifications of chordae, regurgitant orifice area was found to trend positively with ruptured chordal diameter, and strain changes correlated negatively with regurgitant orifice area. Further advancements in clinical imaging modalities, coupled with the next generation of computational techniques will enable more physiologically realistic simulations.
Energy Technology Data Exchange (ETDEWEB)
Kim, Jae Kwan; Lee, J. S.; Yang, T. S.; Cho, J. R.; R, H. [Korea Atomic Energy Research Institute, Taejon (Korea, Republic of)
1997-09-01
In order to establish a correct correlation between them, mechanical characteristics of the ancient structures need to be investigated. Since sedimentary basins are preferred dwelling sites in ancient times, it is necessary to perform SSI analysis to derive correct correlation between the damage and ground motion intensity. Contents of Project are as follows: (1) Generation of stochastic earthquake ground motion considering source mechanism and site effects. (2) Analysis of seismic response of sedimentary basin. (3) Soil-structure interaction analysis of ancient structures (4) Investigation of dynamic response characteristics of ancient structure considering soil-structure interaction effects. A procedure is presented for generation of stochastic earthquake ground motion considering source mechanism and site effects. The simulation method proposed by Boore is used to generate the outcropping rock motion. The free field motion at the soil site is obtained by a convolution analysis. And for the study of wood structures, a nonlinear SDOF model is developed. The effects of soil-structure interaction on the behavior of the wood structures are found to be very minor. But the response can be significantly affected due to the intensity and frequency contents of the input motion. 13 refs., 6 tabs., 31 figs. (author)
Effect of soil–structure interaction on the reliability of reinforced concrete bridges
Directory of Open Access Journals (Sweden)
Kamel Bezih
2015-09-01
Full Text Available In the design of reinforced concrete (RC bridges, the random and nonlinear behavior of soil may lead to insufficient reliability levels. For this reason, it is necessary to take into account the variability of soil properties which can significantly affect the bridge behavior regarding ultimate and serviceability limit states. This study investigates the failure probability for existing reinforced concrete bridges due to the effects of interaction between the soil and the structure. In this paper, a coupled reliability–mechanical approach is developed to study the effect of soil–structure interaction for RC bridges. The modeling of this interaction is incorporated into the mechanical model of RC continuous beams, by considering nonlinear elastic soil stiffness. The reliability analysis highlights the large importance of soil–structure interaction and shows that the structural safety is highly sensitive to the variability of soil properties, especially when the nonlinear behavior of soil is considered.
National Research Council Canada - National Science Library
Vidot, Aidcer
2004-01-01
.... The other effect examined is the soil-structure interaction. First, a direct approach based on a finite element model of the tower, bridge, and dam with the earthquake motion applied at the bedrock is used...
DEFF Research Database (Denmark)
Khan, Sanaullah; Birch, Johnny; Van Calsteren, Marie-Rose
2018-01-01
Despite a very large number of bacterial exopolysaccharides have been reported, detailed knowledge on their molecular structures and associative interactions with proteins is lacking. Small-angle X-ray scattering, dynamic light scattering and analytical ultracentrifugation (AUC) were used...
Soil-structure interaction studies for understanding the behavior of integral abutment bridges.
2012-03-01
Integral Abutment Bridges (IAB) are bridges without any joints within the bridge deck or between the : superstructure and the abutments. An IAB provides many advantages during construction and maintenance of : a bridge. Soil-structure interactions at...
Role of radiation damping in the impedance function approach to soil-structure interaction analysis
International Nuclear Information System (INIS)
1980-05-01
This report was prepared at the request of the Lawrence Livermore Laboratory (LLL) to provide background information for analyzing soil-structure interaction by the frequency-independent impedance function approach. LLL is conducting such analyses as part of its seismic review of selected operating plants under the Systematic Evaluation Program for the US Nuclear Regulatory Commission. The analytical background and basic assumptionsof the impedance function theory are briefly reviewed, and the role of radiation damping in soil-structure interaction analysis is discussed. The validity of modeling soil-structure interaction by using frequency-independent functions is evaluated based on data from several field tests. Finally, the recommended procedures for performing soil-structure interaction analyses are discussed with emphasis on the modal superposition method
Modeling the Effect of Fluid-Structure Interaction on the Impact Dynamics of Pressurized Tank Cars
2009-11-13
This paper presents a computational framework that : analyzes the effect of fluid-structure interaction (FSI) on the : impact dynamics of pressurized commodity tank cars using the : nonlinear dynamic finite element code ABAQUS/Explicit. : There exist...
Shin, Sucheol; Willard, Adam P
2018-06-05
We combine all-atom molecular dynamics simulations with a mean field model of interfacial hydrogen bonding to analyze the effect of surface-water interactions on the structural and energetic properties of the liquid water interface. We show that the molecular structure of water at a weakly interacting ( i.e., hydrophobic) surface is resistant to change unless the strength of surface-water interactions are above a certain threshold. We find that below this threshold water's interfacial structure is homogeneous and insensitive to the details of the disordered surface, however, above this threshold water's interfacial structure is heterogeneous. Despite this heterogeneity, we demonstrate that the equilibrium distribution of molecular orientations can be used to quantify the energetic component of the surface-water interactions that contribute specifically to modifying the interfacial hydrogen bonding network. We identify this specific energetic component as a new measure of hydrophilicity, which we refer to as the intrinsic hydropathy.
CSIR Research Space (South Africa)
Bogaers, Alfred EJ
2015-01-01
Full Text Available In this paper we introduce the idea of combining artificial compressibility (AC) with quasi-Newton (QN) methods to solve strongly coupled, fully/quasi-enclosed fluid-structure interaction (FSI) problems. Partitioned, incompressible, FSI based...
Reduction of Flight Control System/Structural Mode Interaction, Phase I
National Aeronautics and Space Administration — A novel approach is proposed for reducing the degree of interaction of a high gain flight control system with the airframe structural vibration modes, representing a...
An Automated Fluid-Structural Interaction Analysis of a Large Segmented Solid Rocket Motor
National Research Council Canada - National Science Library
Rex, Brian
2003-01-01
.... The fluid-structural interaction (FSI) analysis of the ETM-3 motor used PYTHON, a powerful programming language, and FEM BUILDER, a pre- and post processor developed by ATK Thiokol Propulsion under contract to the AFRL, to automatically...
Advanced Seismic Fragility Modeling using Nonlinear Soil-Structure Interaction Analysis
Energy Technology Data Exchange (ETDEWEB)
Bolisetti, Chandu [Idaho National Lab. (INL), Idaho Falls, ID (United States); Coleman, Justin [Idaho National Lab. (INL), Idaho Falls, ID (United States); Talaat, Mohamed [Simpson-Gupertz & Heger, Waltham, MA (United States); Hashimoto, Philip [Simpson-Gupertz & Heger, Waltham, MA (United States)
2015-09-01
The goal of this effort is to compare the seismic fragilities of a nuclear power plant system obtained by a traditional seismic probabilistic risk assessment (SPRA) and an advanced SPRA that utilizes Nonlinear Soil-Structure Interaction (NLSSI) analysis. Soil-structure interaction (SSI) response analysis for a traditional SPRA involves the linear analysis, which ignores geometric nonlinearities (i.e., soil and structure are glued together and the soil material undergoes tension when the structure uplifts). The NLSSI analysis will consider geometric nonlinearities.
International Nuclear Information System (INIS)
Howard, G.E.; Chitty, D.E.; Oleck, R.F.
1988-04-01
It has long been recognized that soil-structure interaction can significantly influence the earthquake response of massive structures such as nuclear power plant reactor buildings. The linear analysis methods that are widely used to model interaction phenomena can result in often unrecognized safety margins in design for earthquake excitation. Use of improved interaction models which capture nonlinear characteristics of interaction---such as energy dissipation and significant changes in stiffness---can provide realistic predictions of the earthquake loads imposed on nuclear power plant structures and equipment, supplying an improved basis for seismic design review. This report documents the results of a research effort investigating the soil-structure (or structure-media) interaction of reinforced concrete structures founded in backfilled rock sockets. The objectives of the research, which included field testing with semi-scale structural models, were: to examine the influence of the backfilled socket on structural dynamic response; and to develop an experimental data base for the benchmarking of computer simulation procedures
Guidelines for Interactive Reliability-Based Structural Optimization using Quasi-Newton Algorithms
DEFF Research Database (Denmark)
Pedersen, C.; Thoft-Christensen, Palle
increase of the condition number and preserve positive definiteness without discarding previously obtained information. All proposed modifications are also valid for non-interactive optimization problems. Heuristic rules from various optimization problems concerning when and how to impose interactions......Guidelines for interactive reliability-based structural optimization problems are outlined in terms of modifications of standard quasi-Newton algorithms. The proposed modifications minimize the condition number of the approximate Hessian matrix in each iteration, restrict the relative and absolute...
Structures and Interactions of Proteins in the Brain
DEFF Research Database (Denmark)
Nielsen, Lau Dalby
The protein low density lipoprotein receptor related protein 1 (LRP1) plays multiple roles in the biology of amyloid β peptide (Aβ) and Alzheimer’s disease. LRP1 is very important for clearance of Aβ both in the brain and by facilitating Aβ export over the blood brain barrier. In spite of the app......The protein low density lipoprotein receptor related protein 1 (LRP1) plays multiple roles in the biology of amyloid β peptide (Aβ) and Alzheimer’s disease. LRP1 is very important for clearance of Aβ both in the brain and by facilitating Aβ export over the blood brain barrier. In spite...... coding for Arc protein has been domesticated from the same branch of genes that has given rise to retroviruses. We show that even despite the large evolutional distance between Arc and retroviruses. Despite large evolutionary distance Arc still self-assemble into higher order structures that resembles...
Visualization of hierarchically structured information for human-computer interaction
Energy Technology Data Exchange (ETDEWEB)
Cheon, Suh Hyun; Lee, J. K.; Choi, I. K.; Kye, S. C.; Lee, N. K. [Dongguk University, Seoul (Korea)
2001-11-01
Visualization techniques can be used to support operator's information navigation tasks on the system especially consisting of an enormous volume of information, such as operating information display system and computerized operating procedure system in advanced control room of nuclear power plants. By offering an easy understanding environment of hierarchically structured information, these techniques can reduce the operator's supplementary navigation task load. As a result of that, operators can pay more attention on the primary tasks and ultimately improve the cognitive task performance. In this report, an interface was designed and implemented using hyperbolic visualization technique, which is expected to be applied as a means of optimizing operator's information navigation tasks. 15 refs., 19 figs., 32 tabs. (Author)
International Nuclear Information System (INIS)
Lipton, Robert; Polizzi, Anthony
2014-01-01
We employ metamaterial beam-wave interaction structures for tuning the gain and bandwidth of short traveling wave tubes. The interaction structures are made from metal rings of uniform cross section, which are periodically deployed along the length of the traveling wave tube. The aspect ratio of the ring cross sections is adjusted to control both gain and bandwidth. The frequency of operation is controlled by the filling fraction of the ring cross section with respect to the size of the period cell.
An analysis of transient flow in upland watersheds: interactions between structure and process
David Lawrence Brown
1995-01-01
The physical structure and hydrological processes of upland watersheds interact in response to forcing functions such as rainfall, leading to storm runoff generation and pore pressure evolution. Transient fluid flow through distinct flow paths such as the soil matrix, macropores, saprolite, and bedrock may be viewed as a consequence of such interactions. Field...
Directory of Open Access Journals (Sweden)
Ana-Raluca Chiriac
2006-01-01
Full Text Available Between structure, infrastructure (foundation and soil there is an effective interaction, which has to be taken into account as correctly as possible every time we do the calculation. This effective interaction can be analysed in a global form, considering on one hand the entire building, and on the other hand the soil -- establishment surface, or in an analytical form: we consider first the soil -- infrastructure (foundation interaction and then the structure -- infrastructure one. Without considering the interaction, we cannot make neither the calculation (for the soil according to the limiting deformation state which has to be compatible with the structure’s resistance system, nor calculation for the limiting resistance state, because the correct distribution of efforts along the contact surface between the soil and the structure is unknown, so we cannot determine the zones of plastical equilibrium in the soil massive and the conditions of limited equilibrium. Also, without considering the infrastructure, we cannot correctly calculate the efforts and the deformations which may occur in all resistance elements of the building. Therefore, we cannot talk about limiting state calculation without considering the interaction between the soil and the structure itself. The problem of interaction between building, on one hand and soil foundation, on the other hand, is not approached very much in the specialized literature, because of the big difficulties raised by summarizing all the factors that describe the structure and the environment, which would be more accessible to a practical calculation. A lot of buildings or elements of buildings standing on the soil or on another environment with finite rigidity can be taken into account as beams supported on a straining environment, (continuous foundations, resistance walls, longitudinal and transversal membranes of civil and industrial buildings, hydrotechnic works. Therefore, in the present paper we
Directory of Open Access Journals (Sweden)
Elwi Mohammed
2018-01-01
Full Text Available However though the structures are supported on soil, most of the designers do not consider the soil structure interaction and its subsequent effect on structure during an earthquake. Different soil properties can affect seismic waves as they pass through a soil layer. When a structure is subjected to an earthquake excitation, it interacts the foundation and soil, and thus changes the motion of the ground. It means that the movement of the whole ground structure system is influenced by type of soil as well as by the type of structure. Tall buildings are supposed to be of engineered construction in sense that they might have been analyzed and designed to meet the provision of relevant codes of practice and building bye-laws. IS 1893: 2002 “Criteria for Earthquake Resistant Design of Structures” gives response spectrum for different types of soil such as hard, medium and soft. An attempt has been made in this paper to study the effect of Soil-structure interaction on multi storeyed buildings with various foundation systems. Also to study the response of buildings subjected to seismic forces with Rigid and Flexible foundations. Multi storeyed buildings with fixed and flexible support subjected to seismic forces were analyzed under different soil conditions like hard, medium and soft. The buildings were analyzed by Response spectrum method using software SAP2000. The response of building frames such as Lateral deflection, Story drift, Base shear, Axial force and Column moment values for all building frames were presented in this paper.
Generalized added masses computation for fluid structure interaction
International Nuclear Information System (INIS)
Lazzeri, L.; Cecconi, S.; Scala, M.
1983-01-01
The aim of this paper a description of a method to simulate the dynamic effect of a fluid between two structures by means of an added mass and an added stiffness. The method is based on a potential theory which assumes the fluid is inviscid and incompressible (the case of compressibility is discussed); a solution of the corresponding field equation is given as a superposition of elementary conditions (i.e. applicable to elementary boundary conditions). Consequently the pressure and displacements of the fluid on the boundary are given as a function of the series coefficients; the ''work lost'' (i.e. the work done by the pressures on the difference between actual and estimated displacements) is minimized, in this way the expansion coefficients are related to the displacements on the boundaries. Virtual work procedures are then used to compute added masses. The particular case of a free surface (with gravity effects) is discussed, it is shown how the effect can be modelled by means of an added stiffness term. Some examples relative to vibrations in reservoirs are given and discussed. (orig.)
Uncertainty in soil-structure interaction analysis arising from differences in analytical techniques
International Nuclear Information System (INIS)
Maslenikov, O.R.; Chen, J.C.; Johnson, J.J.
1982-07-01
This study addresses uncertainties arising from variations in different modeling approaches to soil-structure interaction of massive structures at a nuclear power plant. To perform a comprehensive systems analysis, it is necessary to quantify, for each phase of the traditional analysis procedure, both the realistic seismic response and the uncertainties associated with them. In this study two linear soil-structure interaction techniques were used to analyze the Zion, Illinois nuclear power plant: a direct method using the FLUSH computer program and a substructure approach using the CLASSI family of computer programs. In-structure response from two earthquakes, one real and one synthetic, was compared. Structure configurations from relatively simple to complicated multi-structure cases were analyzed. The resulting variations help quantify uncertainty in structure response due to analysis procedures
Calderer, Antoni; Guo, Xin; Shen, Lian; Sotiropoulos, Fotis
2018-02-01
We develop a numerical method for simulating coupled interactions of complex floating structures with large-scale ocean waves and atmospheric turbulence. We employ an efficient large-scale model to develop offshore wind and wave environmental conditions, which are then incorporated into a high resolution two-phase flow solver with fluid-structure interaction (FSI). The large-scale wind-wave interaction model is based on a two-fluid dynamically-coupled approach that employs a high-order spectral method for simulating the water motion and a viscous solver with undulatory boundaries for the air motion. The two-phase flow FSI solver is based on the level set method and is capable of simulating the coupled dynamic interaction of arbitrarily complex bodies with airflow and waves. The large-scale wave field solver is coupled with the near-field FSI solver with a one-way coupling approach by feeding into the latter waves via a pressure-forcing method combined with the level set method. We validate the model for both simple wave trains and three-dimensional directional waves and compare the results with experimental and theoretical solutions. Finally, we demonstrate the capabilities of the new computational framework by carrying out large-eddy simulation of a floating offshore wind turbine interacting with realistic ocean wind and waves.
Insights into the fold organization of TIM barrel from interaction energy based structure networks.
Vijayabaskar, M S; Vishveshwara, Saraswathi
2012-01-01
There are many well-known examples of proteins with low sequence similarity, adopting the same structural fold. This aspect of sequence-structure relationship has been extensively studied both experimentally and theoretically, however with limited success. Most of the studies consider remote homology or "sequence conservation" as the basis for their understanding. Recently "interaction energy" based network formalism (Protein Energy Networks (PENs)) was developed to understand the determinants of protein structures. In this paper we have used these PENs to investigate the common non-covalent interactions and their collective features which stabilize the TIM barrel fold. We have also developed a method of aligning PENs in order to understand the spatial conservation of interactions in the fold. We have identified key common interactions responsible for the conservation of the TIM fold, despite high sequence dissimilarity. For instance, the central beta barrel of the TIM fold is stabilized by long-range high energy electrostatic interactions and low-energy contiguous vdW interactions in certain families. The other interfaces like the helix-sheet or the helix-helix seem to be devoid of any high energy conserved interactions. Conserved interactions in the loop regions around the catalytic site of the TIM fold have also been identified, pointing out their significance in both structural and functional evolution. Based on these investigations, we have developed a novel network based phylogenetic analysis for remote homologues, which can perform better than sequence based phylogeny. Such an analysis is more meaningful from both structural and functional evolutionary perspective. We believe that the information obtained through the "interaction conservation" viewpoint and the subsequently developed method of structure network alignment, can shed new light in the fields of fold organization and de novo computational protein design.
ERP evidence on the interaction between information structure and emotional salience of words.
Wang, Lin; Bastiaansen, Marcel; Yang, Yufang; Hagoort, Peter
2013-06-01
Both emotional words and words focused by information structure can capture attention. This study examined the interplay between emotional salience and information structure in modulating attentional resources in the service of integrating emotional words into sentence context. Event-related potentials (ERPs) to affectively negative, neutral, and positive words, which were either focused or nonfocused in question-answer pairs, were evaluated during sentence comprehension. The results revealed an early negative effect (90-200 ms), a P2 effect, as well as an effect in the N400 time window, for both emotional salience and information structure. Moreover, an interaction between emotional salience and information structure occurred within the N400 time window over right posterior electrodes, showing that information structure influences the semantic integration only for neutral words, but not for emotional words. This might reflect the fact that the linguistic salience of emotional words can override the effect of information structure on the integration of words into context. The interaction provides evidence for attention-emotion interactions at a later stage of processing. In addition, the absence of interaction in the early time window suggests that the processing of emotional information is highly automatic and independent of context. The results suggest independent attention capture systems of emotional salience and information structure at the early stage but an interaction between them at a later stage, during the semantic integration of words.
Fluid-Structure Interaction in Continuum Models of Bacterial Biofilms
Hicks, Jared A.
Bacterial biofilms are aggregates of cells that adhere to nearly any solid-fluid interface. While many have harmful effects, such as industrial damage and nosocomial infections, certain biofilm species are now generating renewable energy as the fundamental components of Microbial Fuel Cells (MFCs). In an MFC, bacteria consume organic waste and, as they respire, produce free electrons. To do so efficiently, the bacteria must operate at peak metabolic activity, and so require an ample supply of nutrients. But existing MFC systems face several nutrient delivery problems, including clogging and downstream depletion. Ameliorating these problems will require a better understanding of the interplay between structural development and the surrounding fluid flow. In addition to delivering nutrients that affect biofilm growth, the fluid also exerts stresses that cause erosion, detachment, and deformation. These structural changes, in turn, affect the flow and alter the nutrient distribution. To account for this feedback effect, I have developed a continuum model that couples the growth and deformation processes. My model augments an existing growth model with evolution equations derived from Morphoelasticity Theory, by showing that the growth tensor can be directly related to the biofilm velocity potential. This result helps overcome one of the major practical limitations of Morphoelasticity--there is no physical framework for specifying the growth tensor. Through further analysis of the growth tensor, I define the related adjugate and anisotropic growth tensors, which can be more meaningful measures of growth for some models. Under the assumption of small strain, I show that there exists a small correction to the biofilm growth velocity (the accommodation velocity) that represents the effect of the elastic response on the evolution of the biofilm shape. I derive a solvability condition for the accommodation velocity, and show that it leads to a novel evolution equation for
Interactive computer graphics and its role in control system design of large space structures
Reddy, A. S. S. R.
1985-01-01
This paper attempts to show the relevance of interactive computer graphics in the design of control systems to maintain attitude and shape of large space structures to accomplish the required mission objectives. The typical phases of control system design, starting from the physical model such as modeling the dynamics, modal analysis, and control system design methodology are reviewed and the need of the interactive computer graphics is demonstrated. Typical constituent parts of large space structures such as free-free beams and free-free plates are used to demonstrate the complexity of the control system design and the effectiveness of the interactive computer graphics.
Structural Analysis of DNA Interactions with Magnesium Ion Studied by Raman Spectroscopy
S. Ponkumar; P. Duraisamy; N. Iyandurai
2011-01-01
Problem statement: In the present study, FT Raman spectroscopy had been used to extend our knowledge about Magnesium ion - DNA interactions at various volume ratios (1:50, 1:20, 1:10 and 1:5). Approach: The analysis of FT Raman data supported the existence of structural specificities in the interaction and also the stability of DNA secondary structure. Results: Results from the Raman spectra clearly indicate that the interaction of Magnesium ion with DNA is mainly through the phosphate groups...
International Nuclear Information System (INIS)
Kabir, A.F.; Maryak, M.E.
1991-01-01
Seismic analyses and structural evaluations were performed for a cooling water reservoir of a nuclear reactor facility. The horizontal input seismic motion was the NRC Reg. guide 1.60 spectrum shape anchored at 0.20g zero period acceleration. Vertical input was taken as two-thirds of the horizontal input. Soil structure interaction and hydrodynamic effects were addressed in the seismic analyses. Uncertainties in the soil properties were accounted for by considering three soil profiles. Two 2-dimensional SSI models and a 3-dimensional static model. Representing different areas of the reservoir structures were developed and analyzed to obtain seismic forces and moments, and accelerations at various locations. The results included in this paper indicated that both hydrodynamic and soil-structure interaction effects are significant contributors to the seismic responses of the water-retaining walls of the reservoir
Visualisation and research strategy for computational spatial and structural design interaction
Peeten, D.; Hofmeyer, H.; Thabet, W
2010-01-01
A research engine is under development for studying the interaction of spatial and structural design processes. The design processes are being implemented as two separate configurable transformation steps; a conversion step and an optimisation step. A significant part of the spatial-to-structural
An efficient fluid–structure interaction model for optimizing twistable flapping wings
Wang, Q.; Goosen, J.F.L.; van Keulen, A.
2017-01-01
Spanwise twist can dominate the deformation of flapping wings and alters the aerodynamic performance and power efficiency of flapping wings by changing the local angle of attack. Traditional Fluid–Structure Interaction (FSI) models, based on Computational Structural Dynamics (CSD) and
Fluid-structure interaction with pipe-wall viscoelasticity during water hammer
Keramat, A.; Tijsseling, A.S.; Hou, Q.; Ahmadi, A.
2011-01-01
Fluid-structure interaction (FSI) due to water hammer in a pipeline which has viscoelastic wall behaviour is studied. Appropriate governing equations are derived and numerically solved. In the numerical implementation of the hydraulic and structural equations, viscoelasticity is incorporated using
Fluid-structure interaction with pipe-wall viscoelasticity during water hammer
Keramat, A.; Tijsseling, A.S.; Hou, Q.; Ahmadi, A.
2012-01-01
Fluid–structure interaction (FSI) due to water hammer in a pipeline which has viscoelastic wall behaviour is studied. Appropriate governing equations are derived and numerically solved. In the numerical implementation of the hydraulic and structural equations, viscoelasticity is incorporated using
Structural deformation upon protein-protein interaction: a structural alphabet approach.
Martin, Juliette; Regad, Leslie; Lecornet, Hélène; Camproux, Anne-Claude
2008-02-28
In a number of protein-protein complexes, the 3D structures of bound and unbound partners significantly differ, supporting the induced fit hypothesis for protein-protein binding. In this study, we explore the induced fit modifications on a set of 124 proteins available in both bound and unbound forms, in terms of local structure. The local structure is described thanks to a structural alphabet of 27 structural letters that allows a detailed description of the backbone. Using a control set to distinguish induced fit from experimental error and natural protein flexibility, we show that the fraction of structural letters modified upon binding is significantly greater than in the control set (36% versus 28%). This proportion is even greater in the interface regions (41%). Interface regions preferentially involve coils. Our analysis further reveals that some structural letters in coil are not favored in the interface. We show that certain structural letters in coil are particularly subject to modifications at the interface, and that the severity of structural change also varies. These information are used to derive a structural letter substitution matrix that summarizes the local structural changes observed in our data set. We also illustrate the usefulness of our approach to identify common binding motifs in unrelated proteins. Our study provides qualitative information about induced fit. These results could be of help for flexible docking.
Structural deformation upon protein-protein interaction: A structural alphabet approach
Directory of Open Access Journals (Sweden)
Lecornet Hélène
2008-02-01
Full Text Available Abstract Background In a number of protein-protein complexes, the 3D structures of bound and unbound partners significantly differ, supporting the induced fit hypothesis for protein-protein binding. Results In this study, we explore the induced fit modifications on a set of 124 proteins available in both bound and unbound forms, in terms of local structure. The local structure is described thanks to a structural alphabet of 27 structural letters that allows a detailed description of the backbone. Using a control set to distinguish induced fit from experimental error and natural protein flexibility, we show that the fraction of structural letters modified upon binding is significantly greater than in the control set (36% versus 28%. This proportion is even greater in the interface regions (41%. Interface regions preferentially involve coils. Our analysis further reveals that some structural letters in coil are not favored in the interface. We show that certain structural letters in coil are particularly subject to modifications at the interface, and that the severity of structural change also varies. These information are used to derive a structural letter substitution matrix that summarizes the local structural changes observed in our data set. We also illustrate the usefulness of our approach to identify common binding motifs in unrelated proteins. Conclusion Our study provides qualitative information about induced fit. These results could be of help for flexible docking.
Hoster, Harry E; Roos, Matthias; Breitruck, Achim; Meier, Christoph; Tonigold, Katrin; Waldmann, Thomas; Ziener, Ulrich; Landfester, Katharina; Behm, R Jürgen
2007-11-06
The influence of the substrate and the deposition conditions-vapor deposition versus deposition from solution-on the structures formed upon self-assembly of deposited bis(terpyridine) derivative (2,4'-BTP) monolayers on different hexagonal substrates, including highly oriented pyrolytic graphite (HOPG), Au(111), and (111)-oriented Ag thin films, was investigated by high-resolution scanning tunneling microscopy and by model calculations of the intermolecular energies and the lateral corrugation of the substrate-adsorbate interaction. Similar quasi-quadratic network structures with almost the same lattice constants obtained on all substrates are essentially identical to the optimum configuration expected from an optimization of the adlayer structure with C-H...N-type bridging bonds as a structure-determining factor, which underlines a key role of the intermolecular interactions in adlayer order. Slight distortions from the optimum values to form commensurate adlayer structures on the metal substrates and the preferential orientation of the adlayer with respect to the substrate are attributed to the substrate-adsorbate interactions, specifically, the lateral corrugation in the substrate-adsorbate interaction upon lateral displacement and rotation of the adsorbed BTP molecules. The fact that similar adlayer structures are obtained on HOPG under ultrahigh vacuum conditions (solid|gas interface) and on HOPG in trichlorobenzene (solid|liquid interface) indicates that the intermolecular interactions are not severely affected by the solvent.
Microscopic structure of an interacting boson model in terms of the dyson boson mapping
International Nuclear Information System (INIS)
Geyer, H.B.; Lee, S.Y.
1982-01-01
In an application of the generalized Dyson boson mapping to a shell model Hamiltonian acting in a single j shell, a clear distinction emerges between pair bosons and kinematically determined seniority bosons. As in the Otsuka-Arima-Iachello method it is found that the latter type of boson determines the structure of an interactive boson-model-like Hamiltonian for the single j-shell model. It is furthermore shown that the Dyson boson mapping formalism is equally well suited for investigating possible interactive boson-model-like structures in a multishell case, where dynamical considerations are expected to play a much more important role in determining the structure of physical bosons
International Nuclear Information System (INIS)
Wassermann, K.
1983-01-01
Full-scale dynamic testing on intermediate and high levels was performed at the Heissdampfreaktor (HDR) in 1979. Various types of dynamic forces were applied and response of the reactor containment structure and internal components was measured. Precalculations of dynamic behaviour and response of the structure were made through different mathematical models for the structure and the underlying soil. Soil-Structure Interaction effects are investigated and different theoretical models are compared with experimental results. In each model, the soil is represented by springs attached to the structural model. Stiffnesses of springs are calculated by different finite-element idealizations and half-space approximations. Eigenfrequencies and damping values related to interaction effects (translation, rocking, torsion) are identified from test results. The comparisons of dynamic characteristic of the soil-structure system between precalculations and test results show good agreement in general. (orig.)
Dynamic interaction of components, structure, and foundation of nuclear power facilities
International Nuclear Information System (INIS)
Pajuhesh, J.; Hadjian, A.H.
1977-01-01
A solution is formulated for the dynamic analysis of structures and components with different stiffness and damping characteristics, including the consideration of soil-structure interaction effects. Composite structures are often analysed approximately, in particular with regards to damping. For example, the reactor and other equipment in nuclear power plant structures are often analysed by assuming them uncoupled from the supporting structures. To achieve a better accuracy, the coupled system is hereby analysed as a composite component-structure-soil system. To demonstrate the assembly technique, two examples are considered: (a) a steel structure sitting on a concrete stem and linked by a steel bridge to another concrete structure, and (b) an actual model of a nuclear power plant containment structure. (Auth.)
Kelly, Sinead; O'Rourke, Malachy
2012-04-01
This article describes the use of fluid, solid and fluid-structure interaction simulations on three patient-based abdominal aortic aneurysm geometries. All simulations were carried out using OpenFOAM, which uses the finite volume method to solve both fluid and solid equations. Initially a fluid-only simulation was carried out on a single patient-based geometry and results from this simulation were compared with experimental results. There was good qualitative and quantitative agreement between the experimental and numerical results, suggesting that OpenFOAM is capable of predicting the main features of unsteady flow through a complex patient-based abdominal aortic aneurysm geometry. The intraluminal thrombus and arterial wall were then included, and solid stress and fluid-structure interaction simulations were performed on this, and two other patient-based abdominal aortic aneurysm geometries. It was found that the solid stress simulations resulted in an under-estimation of the maximum stress by up to 5.9% when compared with the fluid-structure interaction simulations. In the fluid-structure interaction simulations, flow induced pressure within the aneurysm was found to be up to 4.8% higher than the value of peak systolic pressure imposed in the solid stress simulations, which is likely to be the cause of the variation in the stress results. In comparing the results from the initial fluid-only simulation with results from the fluid-structure interaction simulation on the same patient, it was found that wall shear stress values varied by up to 35% between the two simulation methods. It was concluded that solid stress simulations are adequate to predict the maximum stress in an aneurysm wall, while fluid-structure interaction simulations should be performed if accurate prediction of the fluid wall shear stress is necessary. Therefore, the decision to perform fluid-structure interaction simulations should be based on the particular variables of interest in a given
International Nuclear Information System (INIS)
Reddy, D.P.
1983-04-01
This volume is divided into six chapters: definition of seismic input ground motion, review of state-of-the-art procedures, analysis guidelines, rock/structure interaction analysis example, comparison of two- and three-dimensional analyses, and comparison of analyses using FLUSH and TRI/SAC Codes
Boundary element method in dynamic interaction of structures with multilayers media
International Nuclear Information System (INIS)
Mihalache, N.; Poterasu, V.F.
1993-01-01
The paper presents the problems of dynamic interaction between the multilayers media and structure by means of B.E.M., using Green's functions. The structure considered by the authors as a particular problem concerns a reinforced concrete shear wall and soil foundation of three layers having different thickness and mechanical characteristics. The authors will present comparatively the stresses and the displacements in static and dynamic regime interaction response of the structure. Theoretical part of the paper presents: Green's functions for the multilayers media in dynamic regime, stiffness matrices, stresses and displacements in the multilayers media exprimed by means of the Green's functions induced by the shear and horizontal forces, computer program, consideration for dynamic, structure-foundation-multilayers soil foundation interaction. (author)
Stiffness and Damping related to steady state soil-structure Interaction of monopiles
DEFF Research Database (Denmark)
Bayat, Mehdi
The present thesis concerns soil–structure interaction affecting the dynamic structural response of offshore wind turbines with focus on soil stiffness and seepage damping due to pore water flow generated by cyclic motion of a monopile. The thesis aims to improve modelling of the dynamic...... and dashpots. An appropriate model based on considering the effect of dynamic behaviour of soil–structure interaction has been explored. In this regard, the coupled equations for porous media have been employed in order to account for soil deformation as well as pore pressure. The effects of drained versus...... undrained behaviour of the soil and the impact of this behaviour on the stiffness and damping related to soil–structure interaction at different load frequencies have been illustrated. Based on the poroelastic and Kelvin models, more realistic dynamic properties have been presented by considering the effect...
Development of soil-structure interaction analysis method (II) - Volume 1
International Nuclear Information System (INIS)
Chang, S. P.; Ko, H. M.; Park, H. K. and others
1994-02-01
This project includes following six items : free field analysis for the determination of site input motions, impedance analysis which simplifies the effects of soil-structure interaction by using lumped parameters, soil-structure interaction analysis including the material nonlinearity of soil depending on the level of strains, strong geometric nonlinearity due to the uplifting of the base, seismic analysis of underground structure such as varied pipes, seismic analysis of liquid storage tanks. Each item contains following contents respectively : state-of-the-art review on each item and data base construction on the past researches, theoretical review on the technology of soil-structure interaction analysis, proposing preferable technology and estimating the domestic applicability, proposing guidelines for evaluation of safety and analysis scheme
Pounding effects during an earthquake, with and without consideration of soil‑structure interaction
Directory of Open Access Journals (Sweden)
Daniela DOBRE
2015-07-01
Full Text Available The pounding between adjacent buildings can cause both architectural and structural damages. The paper presents some aspects related to the Vrancea seismic motions pattern, a review of observed damages after a strong earthquake due to pounding of buildings in Romania, a few causes of pounding, an analytical and numerical modeling study. For the behavior of buildings under structural pounding, an analysis with and without consideration of soil-structure interaction is done.
International Nuclear Information System (INIS)
Schmid, G.; Willms, G.; Huh, Y.; Gibhardt, M.
1988-12-01
SSI 2D/3D is a computer programm to calculate dynamic stiffness matrices for soil-structure-interaction problems in frequency domain. It is applicable to two- or three-dimensional situations. The present report is a detailed manual for the use of the computer code written in FORTRAN 77. In addition it gives a survey of the possibilities of the Boundary Element Method applied to dynamic problems in infinite domains. (orig.) [de
International Nuclear Information System (INIS)
Lee, S.; Kim, J.; Lee, S.J.; Kim, K.S.
1997-01-01
The geometrical and electronic structures of partially hydrated electron systems, in particular, the water hexamer, which have been controversial for decades, have been clarified by an exhaustive search for possible low-lying energy structures. Several competing interaction forces governing the conformation have been examined for the first time. The low-lying energy structures are hybrid (or partially internal and partially surface) excess electron states. Our prediction is evidenced from excellent agreements with available experimental data. The vertical electron-detachment energies are mainly determined by the number of dangling H atoms (H d ) . copyright 1997 The American Physical Society
International Nuclear Information System (INIS)
Sigrist, Jean-Francois; Laine, Christian; Broc, Daniel
2006-01-01
The present paper exposes a homogenization method developed in order to perform the seismic analysis of a nuclear reactor with internal structures modelling and taking fluid structure interaction effects into account. The numerical resolution of fluid-structure interactions has made tremendous progress over the past decades and some applications of the various developed techniques in the industrial field can be found in the literature. As builder of nuclear naval propulsion reactors (ground prototype reactor or embarked reactor on submarines), DCN Propulsion has been working with French nuclear committee CEA for several years in order to integrate fluid-structure analysis in the design stage of current projects. In previous papers modal and seismic analyses of a nuclear reactor with fluid-structure interaction effect were exposed. The studies highlighted the importance of fluid- structure coupling phenomena in the industrial case and focussed on added mass and added stiffness effects. The numerical model used in the previous studies did not take into account the presence of internal structures within the pressure vessel. The present study aims at improving the numerical model of the nuclear reactor to take into account the presence of the internal structures. As the internal structures are periodical within the inner and outer structure of the pressure vessel the proposed model is based on the development of a homogenization method: the presence of internal structure and its effect on the fluid-structure physical interaction is taken into account, although they are not geometrically modeled. The basic theory of the proposed homogenization method is recalled, leading to the modification of fluid-structure coupling operator in the finite element model. The physical consistency of the method is proved by an evaluation of the system mass with the various mass operators (structure, fluid and fluid-structure operators). The method is exposed and validated in a 2 D case
Soil-structure interaction analysis by finite element methods state-of-the-art
International Nuclear Information System (INIS)
Seed, H.B.; Lysmer, J.
1977-01-01
Analyses of soil-structure interaction effects during earthquakes for nuclear power plant structures are usually made by one of two methods - either by means of an idealized complete interaction analysis involving consideration of a compatible variation of motions in the structure and the adjacent soil, or by means of an inertial interaction analysis in which the motions in the adjacent soil are assumed to be the same at all points above the foundation depth. For surface structures, the distribution of free-field motions with depth in the underlying soils has no influence on the structural response and thus, provided the analyses are made in accordance with good practice, good results may be obtained by either method of approach. For embedded structures, however, consideration of the variation of motions with depth is essential if adequate evaluations of soil and structural response are to be obtained without undue conservatism. The finite element analysis procedure is particularly well suited for evaluating the response of embedded structures since it can readily provide consideration of the variation of soil characteristics with depth, the different non-linear deformation and energy absorbing capacities of the various soil strata, the variation of motions with depth in accordance with the general principles of engineering mechanics, the three-dimensional nature of the problem and the effects of adjacent structures on each other
Sonia Kéfi; Berlow, Eric L; Wieters, Evie A; Joppa, Lucas N; Wood, Spencer A; Brose, Ulrich; Navarrete, Sergio A
2015-01-01
How multiple types of non-trophic interactions map onto trophic networks in real communities remains largely unknown. We present the first effort, to our knowledge, describing a comprehensive ecological network that includes all known trophic and diverse non-trophic links among >100 coexisting species for the marine rocky intertidal community of the central Chilean coast. Our results suggest that non-trophic interactions exhibit highly nonrandom structures both alone and with respect to food web structure. The occurrence of different types of interactions, relative to all possible links, was well predicted by trophic structure and simple traits of the source and target species. In this community, competition for space and positive interactions related to habitat/refuge provisioning by sessile and/or basal species were by far the most abundant non-trophic interactions. If these patterns are orroborated in other ecosystems, they may suggest potentially important dynamic constraints on the combined architecture of trophic and non-trophic interactions. The nonrandom patterning of non-trophic interactions suggests a path forward for developing a more comprehensive ecological network theory to predict the functioning and resilience of ecological communities.
Directory of Open Access Journals (Sweden)
Inbar Yuval
2010-07-01
Full Text Available Abstract Background Accurate evaluation and modelling of residue-residue interactions within and between proteins is a key aspect of computational structure prediction including homology modelling, protein-protein docking, refinement of low-resolution structures, and computational protein design. Results Here we introduce a method for accurate protein structure modelling and evaluation based on a novel 4-distance description of residue-residue interaction geometry. Statistical 4-distance preferences were extracted from high-resolution protein structures and were used as a basis for a knowledge-based potential, called Hunter. We demonstrate that 4-distance description of side chain interactions can be used reliably to discriminate the native structure from a set of decoys. Hunter ranked the native structure as the top one in 217 out of 220 high-resolution decoy sets, in 25 out of 28 "Decoys 'R' Us" decoy sets and in 24 out of 27 high-resolution CASP7/8 decoy sets. The same concept was applied to side chain modelling in protein structures. On a set of very high-resolution protein structures the average RMSD was 1.47 Å for all residues and 0.73 Å for buried residues, which is in the range of attainable accuracy for a model. Finally, we show that Hunter performs as good or better than other top methods in homology modelling based on results from the CASP7 experiment. The supporting web site http://bioinfo.weizmann.ac.il/hunter/ was developed to enable the use of Hunter and for visualization and interactive exploration of 4-distance distributions. Conclusions Our results suggest that Hunter can be used as a tool for evaluation and for accurate modelling of residue-residue interactions in protein structures. The same methodology is applicable to other areas involving high-resolution modelling of biomolecules.
International Nuclear Information System (INIS)
Clouteau, D.; Broc, D.; Devesa, G.; Guyonvarh, V.; Massin, P.
2012-01-01
This work aims at improving and validating methods coupling Finite Element (FE) and Boundary Element (BE) Methods in the context of Soil-Structure Interaction (SSI) and Structure-Soil-Structure Interaction (3SI) tests performed by NUPEC on mock-up structures built on an unmade ground. Several cases have been tested: single and juxtaposed buildings, shallow and embedded foundations, with various loading conditions: forced and natural seismic loadings. The numerical simulations of forced vibration tests are in good agreement with the results of the NUPEC experiments in the case of two embedded buildings either in terms of amplitude and resonance. The numerical simulation of seismic response tests by FEM and BEM allows for a proper choice of the 'reference point' where the computed and the experimental displacements coincide. A parametric analysis of Structure-Soil-Structure Interaction carried out by the FEM has allowed to determine the influence of some parameters on SSI. Most of them like the position of the building in the excavation, the direction of the load, the quality of the contact between the sidewalls of the buildings and the soil for embedded foundations, do not show to have a strong influence on the dynamic system behaviour, which is mainly governed by the stiffness of the first soil layer. As far as 3SI is concerned, this paper shows that when the cross interaction has a small effect on the building response in the case of surface foundations, it has a strong influence in the case of embedded foundations with an important decrease of the response at the top of the buildings. (authors)
Aboumoussa, Walid
2014-01-01
Structures placed on hillsides often present a number of challenges and a limited number of economical choices for site design. An option sometimes employed is to use the building frame as a retaining element, comprising a Rigidly Framed Earth Retaining Structure (RFERS). The relationship between temperature and earth pressure acting on RFERS, is explored in this monograph through a 4.5 year monitoring program of a heavily instrumented in service structure. The data indicated that the coefficient of earth pressure behind the monitored RFERS had a strong linear correlation with temperature. The study also revealed that thermal cycles, rather than lateral earth pressure, were the cause of failure in many structural elements. The book demonstrates that depending on the relative stiffness of the retained soil mass and that of the structural frame, the developed lateral earth pressure, during thermal expansion, can reach magnitudes several times larger than those determined using classical earth pressure theories....
Soil-structure interaction for transient loads due to safety relief valve discharges
International Nuclear Information System (INIS)
Tseng, W.S.; Tsai, N.C.
1978-01-01
Dynamic responses of BWR Mark II containment structures subjected to axisymmetric transient pressure loadings due to simultaneous safety relief valve discharges were investigated using finite element analysis, including the soil-structure interaction effect. To properly consider the soil-structure interaction effect, a simplified lumped parameter foundation model and axisymmetric finite element foundation model with viscous boundary impedance are used. Analytical results are presented to demonstrate the effectiveness of the simplified foundation model and to exhibit the dynamic response behavior of the structure as the transient loading frequency and the foundation rigidity vary. The impact of the dynamic structural response due to this type of loading on the equipment design is also discussed. (Auth.)
Soil-structure interaction in nuclear power plants: a comparison of methods
International Nuclear Information System (INIS)
Wight, L.H.
1976-06-01
We performed an extensive parametric survey to analyze the differences between two methods of calculating soil-structure interaction. One method involves discretizing the soil-structure system and solving for the complete response with the LUSH computer code. The other method solves for the lumped mass structural response with Whitman soil springs. Twelve soil-structure interaction problems are solved by each of these methods. Representative results are presented and discussed. The debate within the nuclear industry in the United States over the relative merits of various methods of calculating soil-structure interaction has intensified over the last three years. The debate is largely the result of the U.S. Nuclear Regulatory Commission's position generally favoring the finite element approach. Certain sectors of the industry claim that this ruling is without technical basis, that it requires unnecessary expense, and that it inhibits the judgment of the analyst. We have addressed each of these points through lumped mass and finite element calculations on a set of twelve soil-structure interaction problems. The results of these calculations indicate some of the consequences of the choice of method
Directory of Open Access Journals (Sweden)
Sony Malhotra
Full Text Available Interactions at the molecular level in the cellular environment play a very crucial role in maintaining the physiological functioning of the cell. These molecular interactions exist at varied levels viz. protein-protein interactions, protein-nucleic acid interactions or protein-small molecules interactions. Presently in the field, these interactions and their mechanisms mark intensively studied areas. Molecular interactions can also be studied computationally using the approach named as Molecular Docking. Molecular docking employs search algorithms to predict the possible conformations for interacting partners and then calculates interaction energies. However, docking proposes number of solutions as different docked poses and hence offers a serious challenge to identify the native (or near native structures from the pool of these docked poses. Here, we propose a rigorous scoring scheme called DockScore which can be used to rank the docked poses and identify the best docked pose out of many as proposed by docking algorithm employed. The scoring identifies the optimal interactions between the two protein partners utilising various features of the putative interface like area, short contacts, conservation, spatial clustering and the presence of positively charged and hydrophobic residues. DockScore was first trained on a set of 30 protein-protein complexes to determine the weights for different parameters. Subsequently, we tested the scoring scheme on 30 different protein-protein complexes and native or near-native structure were assigned the top rank from a pool of docked poses in 26 of the tested cases. We tested the ability of DockScore to discriminate likely dimer interactions that differ substantially within a homologous family and also demonstrate that DOCKSCORE can distinguish correct pose for all 10 recent CAPRI targets.
Thermal interaction in crusted melt jets with large-scale structures
Energy Technology Data Exchange (ETDEWEB)
Sugiyama, Ken-ichiro; Sotome, Fuminori; Ishikawa, Michio [Hokkaido Univ., Sapporo (Japan). Faculty of Engineering
1998-01-01
The objective of the present study is to experimentally observe thermal interaction which would be capable of triggering due to entrainment, or entrapment in crusted melt jets with `large-scale structure`. The present experiment was carried out by dropping molten zinc and molten tin of 100 grams, of which mass was sufficient to generate large-scale structures of melt jets. The experimental results show that the thermal interaction of entrapment type occurs in molten-zinc jets with rare probability, and the thermal interaction of entrainment type occurs in molten tin jets with high probability. The difference of thermal interaction between molten zinc and molten tin may attribute to differences of kinematic viscosity and melting point between them. (author)
Interaction of the chaperone calreticulin with proteins and peptides of different structural classes
DEFF Research Database (Denmark)
Duus, K; Sandhu, N; Jørgensen, C S
2009-01-01
The interaction of calreticulin with native and denatured forms and polypeptides in proteolytic digests of proteins representing structural classes of all-alpha-helix (hemoglobin, serum albumin), all-beta-sheet (IgG) and alpha-helix + beta-sheets (lysozyme, ovalbumin) was investigated. The binding...... of calreticulin to denatured proteins was found to depend on conformation and structural class of the protein. No interaction was observed with the native proteins, whereas binding was seen for the denatured proteins, the order of interaction being lysozyme = IgG > ovalbumin >> hemoglobin = serum albumin....... Moreover, the interaction between calreticulin and the heat-denatured proteins depended on the temperature and time used for denaturation and the degree of proteolytic fragmentation. Calreticulin bound well to peptides in proteolytic digests from protease K or chymotrypsin treatment of lysozyme, Ig...
Interaction of negation with tense, modality and information structure in Standard Arabic
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Nasser Al-Horais
2013-06-01
Full Text Available The aim of this paper is to consider the interaction of tense, mood and focus with negation in Standard Arabic. This interaction can be observed via marking the tense and mood of the sentence, or via selecting a particular type of tense, or being associated with Information Structure. Building on this fact, the current paper provides a unified analysis, in which negation in Arabic can be accounted for without a NegP projection.
Numerical Modeling of Fluid-Structure Interaction with Rheologically Complex Fluids
Chen, Xingyuan
2014-01-01
In the present work the interaction between rheologically complex fluids and elastic solids is studied by means of numerical modeling. The investigated complex fluids are non-Newtonian viscoelastic fluids. The fluid-structure interaction (FSI) of this kind is frequently encountered in injection molding, food processing, pharmaceutical engineering and biomedicine. The investigation via experiments is costly, difficult or in some cases, even impossible. Therefore, research is increasingly aided...
Bagli, Enrico; Guidi, Vincenzo
2013-08-01
A toolkit for the simulation of coherent interactions between high-energy charged particles and complex crystal structures, called DYNECHARM++ has been developed. The code has been written in C++ language taking advantage of this object-oriented programing method. The code is capable to evaluating the electrical characteristics of complex atomic structures and to simulate and track the particle trajectory within them. Calculation method of electrical characteristics based on their expansion in Fourier series has been adopted. Two different approaches to simulate the interaction have been adopted, relying on the full integration of particle trajectories under the continuum potential approximation and on the definition of cross-sections of coherent processes. Finally, the code has proved to reproduce experimental results and to simulate interaction of charged particles with complex structures.
Mutations in actin used for structural studies partially disrupt β-thymosin/WH2 domains interaction.
Deville, Célia; Girard-Blanc, Christine; Assrir, Nadine; Nhiri, Naïma; Jacquet, Eric; Bontems, François; Renault, Louis; Petres, Stéphane; van Heijenoort, Carine
2016-10-01
Understanding the structural basis of actin cytoskeleton remodeling requires stabilization of actin monomers, oligomers, and filaments in complex with partner proteins, using various biochemical strategies. Here, we report a dramatic destabilization of the dynamic interaction with a model β-thymosin/WH2 domain induced by mutations in actin. This result underlines that mutant actins should be used with prudence to characterize interactions with intrinsically disordered partners as destabilization of dynamic interactions, although identifiable by NMR, may be invisible to other structural techniques. It also highlights how both β-thymosin/WH2 domains and actin tune local structure and dynamics in regulatory processes involving intrinsically disordered domains. © 2016 Federation of European Biochemical Societies.
Effect of soil-foundation-structure interaction on the seismic response of wind turbines
Directory of Open Access Journals (Sweden)
Sam Austin
2017-09-01
Full Text Available Soil-foundation-structure interaction can affect the seismic response of wind turbines. This paper studies the effects of soil-foundation-structure interaction on the seismic response of 65 kW, 1 MW, and 2 MW horizontal-axis wind turbines with truncated cone steel towers. Four types of foundations with frequency-based design were analyzed, including spread foundation, mono pile, pile group with cap, and anchored spread foundation. Soil is modeled both implicitly (subgrade reaction modulus and explicitly. The finite element model developed using the ANSYS program was first validated using experimental data. Numerical models are then analyzed in both frequency and time domains using the Block Lanczos and generalized HHT-α formulations. Recommendations were given to simplify the soil-foundation-structure interaction analysis of wind turbines subjected to seismic loading.
Fluid-structure interaction analysis of a deck structure during a HCDA
International Nuclear Information System (INIS)
Kulak, R.F.
1979-01-01
Presented is an assessment of the structural integrity of the deck structure of a pool-type LMFBR during a Hypothetical Core Disruptive Accident (HCDA). During this accident the sodium above the core is propelled upward until it impacts against the deck structure. This hydrodynamic loading could produce (1) significant structural damage and (2) sodium leak paths. A finite-element model is used to study the deck dynamics during slug impact. By using the symmetry of the system, a sector model which accounts for the salient features of the system is developed. The main radial I-beam, component support I-beam and bottom annular plate are modeled using triangular plate elements. The concrete fill is modeled using hexahedral continuum elements. Using the above finite-element model the dynamics of the deck during a HCDA are investigated
The effects of soil-structure interaction modeling techniques on in-structure response spectra
International Nuclear Information System (INIS)
Johnson, J.J.; Wesley, D.A.; Almajan, I.T.
1977-01-01
The structure considered for this investigation consisted of the reactor containment building (RCB) and prestressed concrete reactor vessel (PCRV) for a HTGR plant. A conventional lumped-mass dynamic model in three dimensions was used in the study. The horizontal and vertical response, which are uncoupled due to the symmetry of the structure, were determined for horizontal and vertical excitation. Five different site conditions ranging from competent rock to a soft soil site were considered. The simplified approach to the overall plant analysis utilized stiffness proportional composite damping with a limited amount of soil damping consistent with US NRC regulatory guidelines. Selected cases were also analyzed assuming a soil damping value approximating the theoretical value. The results from the simplified approach were compared to those determined by rigorously coupling the structure to a frequency independent half-space representation of the soil. Finally, equivalent modal damping ratios were found by matching the frequency response at a point within the coupled soil-structure system determined by solution of the coupled and uncoupled equations of motion. The basis for comparison of the aforementioned techniques was the response spectra at selected locations within the soil-structure system. Each of the five site conditions was analyzed and in-structure response spectra were generated. The response spectra were combined to form a design envelope which encompasses the entire range of site parameters. Both the design envelopes and the site-by-site results were compared
Prediction of protein-protein interaction sites in sequences and 3D structures by random forests.
Directory of Open Access Journals (Sweden)
Mile Sikić
2009-01-01
Full Text Available Identifying interaction sites in proteins provides important clues to the function of a protein and is becoming increasingly relevant in topics such as systems biology and drug discovery. Although there are numerous papers on the prediction of interaction sites using information derived from structure, there are only a few case reports on the prediction of interaction residues based solely on protein sequence. Here, a sliding window approach is combined with the Random Forests method to predict protein interaction sites using (i a combination of sequence- and structure-derived parameters and (ii sequence information alone. For sequence-based prediction we achieved a precision of 84% with a 26% recall and an F-measure of 40%. When combined with structural information, the prediction performance increases to a precision of 76% and a recall of 38% with an F-measure of 51%. We also present an attempt to rationalize the sliding window size and demonstrate that a nine-residue window is the most suitable for predictor construction. Finally, we demonstrate the applicability of our prediction methods by modeling the Ras-Raf complex using predicted interaction sites as target binding interfaces. Our results suggest that it is possible to predict protein interaction sites with quite a high accuracy using only sequence information.
International Nuclear Information System (INIS)
Nelson, T.A.
1983-12-01
The development of state-of-the-art techniques for analyzing the effects of soil-structure interaction (SSI) on structures during earthquakes is outlined. Emphasis is placed on methods to account for energy dissipation as a result of both wave propagation away from the structure's foundation and hysteretic soil response. Solution techniques are grouped into two major types: substructure methods, which break the problem into a series of steps; and direct methods, which analyze the soil-structure model in one step. In addition to theoretical and historical development of SSI methodology, case studies are presented illustrating the application of these solution techniques. 94 references
International Nuclear Information System (INIS)
Burbery, N.J.; Das, R.; Ferguson, W.G.
2016-01-01
Grain boundaries (GBs) provide a source and/or a sink for crystal defects and store elastic energy due to the non-uniform atomic bonding structure of the GB core. GB structures are thermodynamically driven to transition to the lowest energy configuration possible; however to date there has been little evidence to explain why specific GB structures have a low energy state. Furthermore, there is little quantitative demonstration of the significance of physical and GB structure characteristics on the GB energy, thermal stability, and the effect of temporary local GB structure transformations on defect interactions. This paper evaluates the defect interactions and structure stability of multiple Σ5(310) GB structures in bi-crystals of pure aluminium, and systematically investigates the features at 0 K to characterise multiple metastable structures. Structure stability is evaluated by utilising unstable vacancy defects to initiate GB transformations, and using nudged elastic band simulations to quantify this with the activation energy. The emission of stable vacancy defects from the ‘stable’ and metastable grain boundaries is also evaluated in the same manner. A detailed analysis of dislocation nucleation at the atomistic scale demonstrates that local transformations of GB structure between stable and metastable intermediates can provide a mechanism to accommodate the generation of crystal defects. Kinetic (time-dependent) effects that compete with energetic driving forces for structural transformations of GBs are shown to cause a significant effect on the activation properties that may exceed the influence of GB potential energy. The results demonstrate that GB structural multiplicity can be associated with the generation and absorption of dislocations and vacancies. This paper demonstrates the suitability of atomistic simulations coupled with nudged elastic band simulations to evaluate fundamental thermodynamic properties of pure FCC metals. Overall, this paper
Energy Technology Data Exchange (ETDEWEB)
Burbery, N.J. [Department of Mechanical Engineering, University of Auckland, Auckland 1010 (New Zealand); Das, R., E-mail: r.das@auckland.ac.nz [Department of Mechanical Engineering, University of Auckland, Auckland 1010 (New Zealand); Ferguson, W.G. [Department of Chemical and Materials Engineering, University of Auckland, Auckland 1010 (New Zealand)
2016-08-15
Grain boundaries (GBs) provide a source and/or a sink for crystal defects and store elastic energy due to the non-uniform atomic bonding structure of the GB core. GB structures are thermodynamically driven to transition to the lowest energy configuration possible; however to date there has been little evidence to explain why specific GB structures have a low energy state. Furthermore, there is little quantitative demonstration of the significance of physical and GB structure characteristics on the GB energy, thermal stability, and the effect of temporary local GB structure transformations on defect interactions. This paper evaluates the defect interactions and structure stability of multiple Σ5(310) GB structures in bi-crystals of pure aluminium, and systematically investigates the features at 0 K to characterise multiple metastable structures. Structure stability is evaluated by utilising unstable vacancy defects to initiate GB transformations, and using nudged elastic band simulations to quantify this with the activation energy. The emission of stable vacancy defects from the ‘stable’ and metastable grain boundaries is also evaluated in the same manner. A detailed analysis of dislocation nucleation at the atomistic scale demonstrates that local transformations of GB structure between stable and metastable intermediates can provide a mechanism to accommodate the generation of crystal defects. Kinetic (time-dependent) effects that compete with energetic driving forces for structural transformations of GBs are shown to cause a significant effect on the activation properties that may exceed the influence of GB potential energy. The results demonstrate that GB structural multiplicity can be associated with the generation and absorption of dislocations and vacancies. This paper demonstrates the suitability of atomistic simulations coupled with nudged elastic band simulations to evaluate fundamental thermodynamic properties of pure FCC metals. Overall, this paper
LOADS INTERACTION DOMAINS METHODOLOGY FOR THE DESIGN OF STEEL GREENHOUSE STRUCTURES
Directory of Open Access Journals (Sweden)
Sergio Castellano
2007-03-01
Full Text Available Aim of this research is to develop a design methodology which correlates main structural design parameters, whose production is characterised by high levels of standardization, such as the height of gutter or the distance between frames, with actions on the greenhouse. The methodology, based on the use of charts and abacus, permits a clear and a direct interpretation of the structural response to design load combinations and allows the design of structural improvements with the aim of the optimization of the ratio benefits (structural strength/costs. The study of structural interaction domains allowed a clear and a direct interpretation of the structural response to design load combinations. The diagrams highlight not only if the structure fulfils the standard requirements but also the safety levels with respect to design load combinations and allow the structural designer how to operate in order to optimize the structural response with standard requirements achieving the best ratio benefits (structural safety/ costs. The methodology was developed basing on criteria assigned by EN13031 on two different kinds of greenhouse structures: an arched greenhouse with a film plastic covering and a duo pitched roof greenhouse cover with rigid plastic membranes. Structural interaction domains for arched greenhouse showed a better capability of the structure to resist to vertical loads then to horizontal one. Moreover, the climatic load distribution on the structure assigned by EN13031 is such that the combination of climatic actions is less dangerous for the structure then their individual application. Whilst, duo pitched roof steel greenhouse interaction domains, showed a better capability of the structure to resist to vertical loads then to horizontal one and that, in any case, the serviceability limit states analysis is more strict then the ULS one. The shape of structural domains highlighted that the combination of actions is more dangerous for the
Numerical Analyses of Subsoil-structure Interaction in Original Non-commercial Software based on FEM
Cajka, R.; Vaskova, J.; Vasek, J.
2018-04-01
For decades attention has been paid to interaction of foundation structures and subsoil and development of interaction models. Given that analytical solutions of subsoil-structure interaction could be deduced only for some simple shapes of load, analytical solutions are increasingly being replaced by numerical solutions (eg. FEM – Finite element method). Numerical analyses provides greater possibilities for taking into account the real factors involved in the subsoil-structure interaction and was also used in this article. This makes it possible to design the foundation structures more efficiently and still reliably and securely. Currently there are several software that, can deal with the interaction of foundations and subsoil. It has been demonstrated that non-commercial software called MKPINTER (created by Cajka) provides appropriately results close to actual measured values. In MKPINTER software stress-strain analysis of elastic half-space by means of Gauss numerical integration and Jacobean of transformation is done. Input data for numerical analysis were observed by experimental loading test of concrete slab. The loading was performed using unique experimental equipment which was constructed in the area Faculty of Civil Engineering, VŠB-TU Ostrava. The purpose of this paper is to compare resulting deformation of the slab with values observed during experimental loading test.
International Nuclear Information System (INIS)
Ciepluch, Karol; Katir, Nadia; El Kadib, Abdelkrim; Weber, Monika; Caminade, Anne-Marie; Bousmina, Mostapha; Pierre Majoral, Jean; Bryszewska, Maria
2012-01-01
This work deals with photo-physical and structural interactions between viologen phosphorus dendrimers and human serum albumin (HSA). Viologens are derivatives of 4,4′-bipyridinium salts. Aiming to rationalize the parameters governing such interactions eight types of these polycationic dendrimers in which the generation, the number of charges, the nature of the core and of the terminal groups vary from one to another, were designed and used. The influence of viologen-based dendrimers' on human serum albumin has been investigated. The photo-physical interactions of the two systems have been monitored by fluorescence quenching of free L-tryptophan and of HSA tryptophan residue. Additionally, using circular dichroism (CD) the effect of dendrimers on the secondary structure of albumin was measured. The obtained results show that viologen dendrimers interact with human serum albumin quenching its fluorescence either by collisional (dynamic) way or by forming complexes in a ground state (static quenching). In some cases the quenching is accompanied by changes of the secondary structure of HSA. - Highlights: ► Photo-physical interactions between viologen phosphorus dendrimers and human serum albumin (HSA) were investigated. ► The viologen dendrimers can quench the fluorescence of tryptophan in HSA. ► CD spectra to explain the changes in secondary structure of albumin after exposition of dendrimers.
Energy Technology Data Exchange (ETDEWEB)
Ciepluch, Karol, E-mail: ciepluch@biol.uni.lodz.pl [Department of General Biophysics, University of Lodz, 141/143 Pomorska St., 90-236 Lodz (Poland); Katir, Nadia [Laboratoire de Chimie de Coordination du CNRS (LCC), 205 route de Narbonne, F-31077 Toulouse cedex 4 (France); Institute of Nanomaterials and Nanotechnology (INANOTECH)-MAScIR (Moroccan Foundation for Advanced Science, Innovation and Research), ENSET, Avenue de l' Armee Royale, Madinat El Irfane, 10100 Rabat (Morocco); El Kadib, Abdelkrim [Institute of Nanomaterials and Nanotechnology (INANOTECH)-MAScIR (Moroccan Foundation for Advanced Science, Innovation and Research), ENSET, Avenue de l' Armee Royale, Madinat El Irfane, 10100 Rabat (Morocco); Weber, Monika [Department of General Biophysics, University of Lodz, 141/143 Pomorska St., 90-236 Lodz (Poland); Caminade, Anne-Marie [Laboratoire de Chimie de Coordination du CNRS (LCC), 205 route de Narbonne, F-31077 Toulouse cedex 4 (France); Bousmina, Mostapha [Hassan II Academy of Sciences and Technology, Avenue MVI, Km4, 10220 Rabat (Morocco); Pierre Majoral, Jean [Laboratoire de Chimie de Coordination du CNRS (LCC), 205 route de Narbonne, F-31077 Toulouse cedex 4 (France); Hassan II Academy of Sciences and Technology, Avenue MVI, Km4, 10220 Rabat (Morocco); Bryszewska, Maria [Department of General Biophysics, University of Lodz, 141/143 Pomorska St., 90-236 Lodz (Poland)
2012-06-15
This work deals with photo-physical and structural interactions between viologen phosphorus dendrimers and human serum albumin (HSA). Viologens are derivatives of 4,4 Prime -bipyridinium salts. Aiming to rationalize the parameters governing such interactions eight types of these polycationic dendrimers in which the generation, the number of charges, the nature of the core and of the terminal groups vary from one to another, were designed and used. The influence of viologen-based dendrimers' on human serum albumin has been investigated. The photo-physical interactions of the two systems have been monitored by fluorescence quenching of free L-tryptophan and of HSA tryptophan residue. Additionally, using circular dichroism (CD) the effect of dendrimers on the secondary structure of albumin was measured. The obtained results show that viologen dendrimers interact with human serum albumin quenching its fluorescence either by collisional (dynamic) way or by forming complexes in a ground state (static quenching). In some cases the quenching is accompanied by changes of the secondary structure of HSA. - Highlights: Black-Right-Pointing-Pointer Photo-physical interactions between viologen phosphorus dendrimers and human serum albumin (HSA) were investigated. Black-Right-Pointing-Pointer The viologen dendrimers can quench the fluorescence of tryptophan in HSA. Black-Right-Pointing-Pointer CD spectra to explain the changes in secondary structure of albumin after exposition of dendrimers.
DEFF Research Database (Denmark)
Pawlowski, F; Jorgensen, P; Olsen, Jeppe
2002-01-01
A detailed study is carried out of the accuracy of molecular equilibrium geometries obtained from least-squares fits involving experimental rotational constants B(0) and sums of ab initio vibration-rotation interaction constants alpha(r)(B). The vibration-rotation interaction constants have been...... calculated for 18 single-configuration dominated molecules containing hydrogen and first-row atoms at various standard levels of ab initio theory. Comparisons with the experimental data and tests for the internal consistency of the calculations show that the equilibrium structures generated using Hartree......-Fock vibration-rotation interaction constants have an accuracy similar to that obtained by a direct minimization of the CCSD(T) energy. The most accurate vibration-rotation interaction constants are those calculated at the CCSD(T)/cc-pVQZ level. The equilibrium bond distances determined from these interaction...
A vorticity based approach to handle the fluid-structure interaction problems
Energy Technology Data Exchange (ETDEWEB)
Farahbakhsh, Iman; Ghassemi, Hassan [Department of Ocean Engineering, Amirkabir University of Technology, Tehran (Iran, Islamic Republic of); Sabetghadam, Fereidoun, E-mail: i.farahbakhsh@aut.ac.ir [Mechanical and Aerospace Engineering Department, Science and Research Branch, Islamic Azad University (IAU), Tehran (Iran, Islamic Republic of)
2016-02-15
A vorticity based approach for the numerical solution of the fluid-structure interaction problems is introduced in which the fluid and structure(s) can be viewed as a continuum. Retrieving the vorticity field and recalculating a solenoidal velocity field, specially at the fluid-structure interface, are the kernel of the proposed algorithm. In the suggested method, a variety of constitutive equations as a function of left Cauchy–Green deformation tensor can be applied for modeling the structure domain. A nonlinear Mooney–Rivlin and Saint Venant–Kirchhoff model are expressed in terms of the left Cauchy–Green deformation tensor and the presented method is able to model the behavior of a visco-hyperelastic structure in the incompressible flow. Some numerical experiments, with considering the neo-Hookean model for structure domain, are executed and the results are validated via the available results from literature. (paper)
Post-liquefaction soil-structure interaction for buried structures: Sensitivity analysis studies
International Nuclear Information System (INIS)
Pires, J.A.; Ang, H.S.; Katayama, I.; Satoh, M.
1993-01-01
The post liquefaction behavior of buried conduits is analyzed and sensitivity analysis is conducted to investigate the damage potential of the forces induced in the buried lifelines following seismically induced liquefaction of the surrounding soil. Various lifeline configurations and loading conditions are considered. The loading conditions considered are: buoyancy forces and permanent ground displacements parallel to the lifeline axis. Pertinent parameters for the soil-lifeline interaction following liquefaction are identified. (author)
Soil-structure interaction analysis by finite element methods - state-of-the-art
International Nuclear Information System (INIS)
Seed, H.B.; Lysmer, J.
1977-01-01
Analyses of soil-structure interaction effects during earthquakes for nuclear power plant structures are usually made by one of two methods-either by means of an idealized complete interaction analysis involving consideration of a compatible variation of motion in the structure and the adjacent soil, or by means of an inertial interaction analysis in which the motions in the adjacent soil are assumed to be the same at all points above the foundation depth. For embedded structures, consideration of the variation of motions with depth is essential if adequate evaluations of soil and structural response are to be obtained without undue conservatism. The finite element analysis procedure is particularly well suited for evaluating the response of embedded structures since it can readily provide consideration of the variation of soil characteristics with depth, the different non-linear deformation and energy absorbing capacities of the various soil strata, the variation of motions with depth in accordance with the general principles of engineering mechanics, the three-dimensional nature of the problem and the effects of adjacent structures on each other. (Auth.)
Direct methods of soil-structure interaction analysis for earthquake loadings(II)
Energy Technology Data Exchange (ETDEWEB)
Yun, Chung Bang; Lee, S R; Kim, J M; Park, K L; Oh, S B; Choi, J S; Kim, Y S [Korea Advanced Institute of Science Technology, Daejeon (Korea, Republic of)
1994-07-15
In this study, methods for 3-D soil-structure interaction analysis have been studied. They are 3-D axisymmetric analysis method, 3-D axisymmetric finite element method incorporating infinite elements, and 3-D boundary element methods. The computer code, named as 'KIESSI - PF', has been developed which is based on the 3-D axisymmetric finite element method coupled with infinite element method. It is able to simulate forced vibration test results of a soil-structure interaction system. The Hualien FVT post-correlation analysis before backfill and the blind prediction analysis after backfill have been carried out using the developed computer code 'KIESSI - PF'.
Modal Analysis on Fluid-Structure Interaction of MW-Level Vertical Axis Wind Turbine Tower
Tan Jiqiu; Zhong Dingqing; Wang Qiong
2014-01-01
In order to avoid resonance problem of MW-level vertical axis wind turbine induced by wind, a flow field model of the MW-level vertical axis wind turbine is established by using the fluid flow control equations, calculate flow’s velocity and pressure of the MW-level vertical axis wind turbine and load onto tower’s before and after surface, study the Modal analysis of fluid-structure interaction of MW-level vertical axis wind turbine tower. The results show that fluid-structure interaction fie...
Smoothed particle hydrodynamics modelling in continuum mechanics: fluid-structure interaction
Directory of Open Access Journals (Sweden)
Groenenboom P. H. L.
2009-06-01
Full Text Available Within this study, the implementation of the smoothed particle hydrodynamics (SPH method solving the complex problem of interaction between a quasi-incompressible fluid involving a free surface and an elastic structure is outlined. A brief description of the SPH model for both the quasi-incompressible fluid and the isotropic elastic solid is presented. The interaction between the fluid and the elastic structure is realised through the contact algorithm. The results of numerical computations are confronted with the experimental as well as computational data published in the literature.
Direct methods of soil-structure interaction analysis for earthquake loadings
International Nuclear Information System (INIS)
Yun, J. B.; Kim, J. M.; Kim, Y. S. and others
1993-07-01
The objectives of this study are to review the methods of soil- structure interaction system analysis, particularly the direct method, and to carry out the blind prediction analysis of the Forced Vibration Test(FVT) before backfill in the course of Hualien LSST project. The scope and contents of this study are as follows : theoretical review on soil-structure interaction analysis methods, free-field response analysis methods, modelling methods of unbounded exterior region, hualien LSST FVT blind prediction analysis before backfill. The analysis results are found to be very well compared with the field test results
Direct methods of soil-structure interaction analysis for earthquake loadings(II)
International Nuclear Information System (INIS)
Yun, Chung Bang; Lee, S. R.; Kim, J. M.; Park, K. L.; Oh, S. B.; Choi, J. S.; Kim, Y. S.
1994-07-01
In this study, methods for 3-D soil-structure interaction analysis have been studied. They are 3-D axisymmetric analysis method, 3-D axisymmetric finite element method incorporating infinite elements, and 3-D boundary element methods. The computer code, named as 'KIESSI - PF', has been developed which is based on the 3-D axisymmetric finite element method coupled with infinite element method. It is able to simulate forced vibration test results of a soil-structure interaction system. The Hualien FVT post-correlation analysis before backfill and the blind prediction analysis after backfill have been carried out using the developed computer code 'KIESSI - PF'
Busby, Posy E; Lamit, Louis J; Keith, Arthur R; Newcombe, George; Gehring, Catherine A; Whitham, Thomas G; Dirzo, Rodolfo
2015-07-01
Plant resistance to pathogens or insect herbivores is common, but its potential for indirectly influencing plant-associated communities is poorly known. Here, we test whether pathogens' indirect effects on arthropod communities and herbivory depend on plant resistance to pathogens and/or herbivores, and address the overarching interacting foundation species hypothesis that genetics-based interactions among a few highly interactive species can structure a much larger community. In a manipulative field experiment using replicated genotypes of two Populus species and their interspecific hybrids, we found that genetic variation in plant resistance to both pathogens and insect herbivores modulated the strength of pathogens' indirect effects on arthropod communities and insect herbivory. First, due in part to the pathogens' differential impacts on leaf biomass among the two Populus species and the hybrids, the pathogen most strongly impacted arthropod community composition, richness, and abundance on the pathogen-susceptible tree species. Second, we found similar patterns comparing pathogen-susceptible and pathogen-resistant genotypes within species. Third, within a plant species, pathogens caused a fivefold greater reduction in herbivory on insect-herbivore-susceptible plant genotypes than on herbivore-resistant genotypes, demonstrating that the pathogen-herbivore interaction is genotype dependent. We conclude that interactions among plants, pathogens, and herbivores can structure multitrophic communities, supporting the interacting foundation species hypothesis. Because these interactions are genetically based, evolutionary changes in genetic resistance could result in ecological changes in associated communities, which may in turn feed back to affect plant fitness.
Dynamic interactions of components, structure, and foundation of nuclear power facilities
International Nuclear Information System (INIS)
Pajuhesh, J.; Hadjian, A.H.
1977-01-01
A solution is formulated for the dynamic analysis of structures and components with different stiffness and damping characteristics, including the consideration of soil-structure interaction effects. Composite structures are often analysed approximately, in particular with regards to damping. For example, the reactor and other equipment in nuclear power plant structures are often analysed by assuming them uncoupled from the supporting structures. To achieve a better accuracy, the coupled system is hereby analysed as a composite component-structure-soil system. Although derivation of mass and stiffness matrices for the component-structure-soil system is a simple problem, the determination of the damping characteristics of such a system is more complex. This emphasis on the proper evaluation of system damping is warranted on the grounds that, when resonance conditions occur, the response amplitude is governed to a significant degree by the system damping. The damping information is usually available for each sub-structure separately with its based fixed or devoid of rigid-body modes of motion. The rigid-body motions are often free of damping resistance but sometimes, such as in the case of soil-structure interaction, or in the case of aerodynamic resistance, are uniquely defined. The composite damping matrix for the complete structure is hereby derived from the above-mentioned information. Thus, the damping matrix is first obtained for the free-free model of each sub-structure (the model containing the structural degrees of freedom together with rigid-body modes of motion), and then the submatrices for the free-free models are assembled to form the composite damping matrix in acccordance with an assembly technique relating the sub-structure coordinates to the global coordinates of the composite structure
Brehm, Christoph; Barad, Michael F.; Kiris, Cetin C.
2016-01-01
An immersed boundary method for the compressible Navier-Stokes equation and the additional infrastructure that is needed to solve moving boundary problems and fully coupled fluid-structure interaction is described. All the methods described in this paper were implemented in NASA's LAVA solver framework. The underlying immersed boundary method is based on the locally stabilized immersed boundary method that was previously introduced by the authors. In the present paper this method is extended to account for all aspects that are involved for fluid structure interaction simulations, such as fast geometry queries and stencil computations, the treatment of freshly cleared cells, and the coupling of the computational fluid dynamics solver with a linear structural finite element method. The current approach is validated for moving boundary problems with prescribed body motion and fully coupled fluid structure interaction problems in 2D and 3D. As part of the validation procedure, results from the second AIAA aeroelastic prediction workshop are also presented. The current paper is regarded as a proof of concept study, while more advanced methods for fluid structure interaction are currently being investigated, such as geometric and material nonlinearities, and advanced coupling approaches.
Directory of Open Access Journals (Sweden)
Pietro Scaturro
Full Text Available Non-structural protein 1 (NS1 is one of the most enigmatic proteins of the Dengue virus (DENV, playing distinct functions in immune evasion, pathogenesis and viral replication. The recently reported crystal structure of DENV NS1 revealed its peculiar three-dimensional fold; however, detailed information on NS1 function at different steps of the viral replication cycle is still missing. By using the recently reported crystal structure, as well as amino acid sequence conservation, as a guide for a comprehensive site-directed mutagenesis study, we discovered that in addition to being essential for RNA replication, DENV NS1 is also critically required for the production of infectious virus particles. Taking advantage of a trans-complementation approach based on fully functional epitope-tagged NS1 variants, we identified previously unreported interactions between NS1 and the structural proteins Envelope (E and precursor Membrane (prM. Interestingly, coimmunoprecipitation revealed an additional association with capsid, arguing that NS1 interacts via the structural glycoproteins with DENV particles. Results obtained with mutations residing either in the NS1 Wing domain or in the β-ladder domain suggest that NS1 might have two distinct functions in the assembly of DENV particles. By using a trans-complementation approach with a C-terminally KDEL-tagged ER-resident NS1, we demonstrate that the secretion of NS1 is dispensable for both RNA replication and infectious particle production. In conclusion, our results provide an extensive genetic map of NS1 determinants essential for viral RNA replication and identify a novel role of NS1 in virion production that is mediated via interaction with the structural proteins. These studies extend the list of NS1 functions and argue for a central role in coordinating replication and assembly/release of infectious DENV particles.
International Nuclear Information System (INIS)
Khatibinia, Mohsen; Javad Fadaee, Mohammad; Salajegheh, Javad; Salajegheh, Eysa
2013-01-01
An efficient metamodeling framework in conjunction with the Monte-Carlo Simulation (MCS) is introduced to reduce the computational cost in seismic reliability assessment of existing RC structures. In order to achieve this purpose, the metamodel is designed by combining weighted least squares support vector machine (WLS-SVM) and a wavelet kernel function, called wavelet weighted least squares support vector machine (WWLS-SVM). In this study, the seismic reliability assessment of existing RC structures with consideration of soil–structure interaction (SSI) effects is investigated in accordance with Performance-Based Design (PBD). This study aims to incorporate the acceptable performance levels of PBD into reliability theory for comparing the obtained annual probability of non-performance with the target values for each performance level. The MCS method as the most reliable method is utilized to estimate the annual probability of failure associated with a given performance level in this study. In WWLS-SVM-based MCS, the structural seismic responses are accurately predicted by WWLS-SVM for reducing the computational cost. To show the efficiency and robustness of the proposed metamodel, two RC structures are studied. Numerical results demonstrate the efficiency and computational advantages of the proposed metamodel for the seismic reliability assessment of structures. Furthermore, the consideration of the SSI effects in the seismic reliability assessment of existing RC structures is compared to the fixed base model. It shows which SSI has the significant influence on the seismic reliability assessment of structures.
Nonelastic soil-structure interaction by BE- and FE-methods
International Nuclear Information System (INIS)
Hadjikov, L.; Dineva, P.; Rangelov, T.
1987-01-01
The main purpose of this paper is to study the soil-structure interaction for multilayered, nonlineary physically soil system with arbitrary geometric form of boundaries between the layers, accounting the topographic specifics on the free surface. The behaviour of the structure is described by the finite element method (FEM). For the description of the propagation of the seismic waves in the soil the boundary element method (BEM) is used. The numerical results for the behaviour of the soil-structure interaction for nuclear power plant on a real geological site are obtained. The influence of the nonelastic soil and structure properties and the influence of the topographic specifities of the geological region are investigated. (orig./HP)
Giant amplification in degenerate band edge slow-wave structures interacting with an electron beam
Energy Technology Data Exchange (ETDEWEB)
Othman, Mohamed A. K.; Veysi, Mehdi; Capolino, Filippo [Department of Electrical Engineering and Computer Science, University of California, Irvine, California 92697 (United States); Figotin, Alexander [Department of Mathematics, University of California, Irvine, California 92697 (United States)
2016-03-15
We propose a new amplification regime based on a synchronous operation of four degenerate electromagnetic (EM) modes in a slow-wave structure and the electron beam, referred to as super synchronization. These four EM modes arise in a Fabry-Pérot cavity when degenerate band edge (DBE) condition is satisfied. The modes interact constructively with the electron beam resulting in superior amplification. In particular, much larger gains are achieved for smaller beam currents compared to conventional structures based on synchronization with only a single EM mode. We demonstrate giant gain scaling with respect to the length of the slow-wave structure compared to conventional Pierce type single mode traveling wave tube amplifiers. We construct a coupled transmission line model for a loaded waveguide slow-wave structure exhibiting a DBE, and investigate the phenomenon of giant gain via super synchronization using the Pierce model generalized to multimode interaction.
Timóteo, Sérgio; Correia, Marta; Rodríguez-Echeverría, Susana; Freitas, Helena; Heleno, Ruben
2018-01-10
Species interaction networks are traditionally explored as discrete entities with well-defined spatial borders, an oversimplification likely impairing their applicability. Using a multilayer network approach, explicitly accounting for inter-habitat connectivity, we investigate the spatial structure of seed-dispersal networks across the Gorongosa National Park, Mozambique. We show that the overall seed-dispersal network is composed by spatially explicit communities of dispersers spanning across habitats, functionally linking the landscape mosaic. Inter-habitat connectivity determines spatial structure, which cannot be accurately described with standard monolayer approaches either splitting or merging habitats. Multilayer modularity cannot be predicted by null models randomizing either interactions within each habitat or those linking habitats; however, as habitat connectivity increases, random processes become more important for overall structure. The importance of dispersers for the overall network structure is captured by multilayer versatility but not by standard metrics. Highly versatile species disperse many plant species across multiple habitats, being critical to landscape functional cohesion.
Interaction Deep Excavation Adjacent Structure Numerical Two and Three Dimensional Modeling
International Nuclear Information System (INIS)
Abdallah, M.; Chehade, F. H.; Chehade, W.; Fawaz, A.
2011-01-01
Urban development often requires the construction of deep excavations near to buildings or other structures. We have to study complex material structure interactions where we should take into consideration several particularities. In this paper, we perform a numerical modeling with the finite element method, using PLAXIS software, of the interaction deep excavation-diaphragm wall-soil-structure in the case of non linear soil behavior. We focus our study on a comparison of the results given respectively by two and three dimensional modelings. This allows us to give some recommendations concerning the validity of twodimensional study. We perform a parametric study according to the initial loading on the structure and the struts number. (author)
Lv, X.; Zhao, Y.; Huang, X. Y.; Xia, G. H.; Su, X. H.
2007-07-01
A new three-dimensional (3D) matrix-free implicit unstructured multigrid finite volume (FV) solver for structural dynamics is presented in this paper. The solver is first validated using classical 2D and 3D cantilever problems. It is shown that very accurate predictions of the fundamental natural frequencies of the problems can be obtained by the solver with fast convergence rates. This method has been integrated into our existing FV compressible solver [X. Lv, Y. Zhao, et al., An efficient parallel/unstructured-multigrid preconditioned implicit method for simulating 3d unsteady compressible flows with moving objects, Journal of Computational Physics 215(2) (2006) 661-690] based on the immersed membrane method (IMM) [X. Lv, Y. Zhao, et al., as mentioned above]. Results for the interaction between the fluid and an immersed fixed-free cantilever are also presented to demonstrate the potential of this integrated fluid-structure interaction approach.
Structural and energetic study of cation-π-cation interactions in proteins.
Pinheiro, Silvana; Soteras, Ignacio; Gelpí, Josep Lluis; Dehez, François; Chipot, Christophe; Luque, F Javier; Curutchet, Carles
2017-04-12
Cation-π interactions of aromatic rings and positively charged groups are among the most important interactions in structural biology. The role and energetic characteristics of these interactions are well established. However, the occurrence of cation-π-cation interactions is an unexpected motif, which raises intriguing questions about its functional role in proteins. We present a statistical analysis of the occurrence, composition and geometrical preferences of cation-π-cation interactions identified in a set of non-redundant protein structures taken from the Protein Data Bank. Our results demonstrate that this structural motif is observed at a small, albeit non-negligible frequency in proteins, and suggest a preference to establish cation-π-cation motifs with Trp, followed by Tyr and Phe. Furthermore, we have found that cation-π-cation interactions tend to be highly conserved, which supports their structural or functional role. Finally, we have performed an energetic analysis of a representative subset of cation-π-cation complexes combining quantum-chemical and continuum solvation calculations. Our results point out that the protein environment can strongly screen the cation-cation repulsion, leading to an attractive interaction in 64% of the complexes analyzed. Together with the high degree of conservation observed, these results suggest a potential stabilizing role in the protein fold, as demonstrated recently for a miniature protein (Craven et al., J. Am. Chem. Soc. 2016, 138, 1543). From a computational point of view, the significant contribution of non-additive three-body terms challenges the suitability of standard additive force fields for describing cation-π-cation motifs in molecular simulations.
International Nuclear Information System (INIS)
Rubin, Yu.V.; Belous, L.F.
2012-01-01
Self-associates of nucleic acid components (stacking trimers and tetramers of the base pairs of nucleic acids) and short fragments of nucleic acids are nanoparticles (linear sizes of these particles are more than 10 A). Modern quantum-mechanical methods and softwares allow one to perform ab initio calculations of the systems consisting of 150-200 atoms with enough large basis sets (for example, 6-31G * ). The aim of this work is to reveal the peculiarities of molecular and electronic structures, as well as the energy features of nanoparticles of nucleic acid components. We had carried out ab initio calculations of the molecular structure and interactions in the stacking dimer, trimer, and tetramer of nucleic base pairs and in the stacking (TpG)(ApC) dimer and (TpGpC) (ApCpG) trimer of nucleotides, which are small DNA fragments. The performed calculations of molecular structures of dimers and trimers of nucleotide pairs showed that the interplanar distance in the structures studied is equal to 3.2 A on average, and the helical angle in a trimer is approximately equal to 30 o : The distance between phosphor atoms in neighboring chains is 13.1 A. For dimers and trimers under study, we calculated the horizontal interaction energies. The analysis of interplanar distances and angles between nucleic bases and their pairs in the calculated short oligomers of nucleic acid base pairs (stacking dimer, trimer, and tetramer) has been carried out. Studies of interactions in the calculated short oligomers showed a considerable role of the cross interaction in the stabilization of the structures. The contribution of cross interactions to the horizontal interactions grows with the length of an oligomer. Nanoparticle components get electric charges in nanoparticles. Longwave low-intensity bands can appear in the electron spectra of nanoparticles.
Structural interactions between lipids, water and S1-S4 voltage-sensing domains.
Krepkiy, Dmitriy; Gawrisch, Klaus; Swartz, Kenton J
2012-11-02
Membrane proteins serve crucial signaling and transport functions, yet relatively little is known about their structures in membrane environments or how lipids interact with these proteins. For voltage-activated ion channels, X-ray structures suggest that the mobile voltage-sensing S4 helix would be exposed to the membrane, and functional studies reveal that lipid modification can profoundly alter channel activity. Here, we use solid-state NMR to investigate structural interactions of lipids and water with S1-S4 voltage-sensing domains and to explore whether lipids influence the structure of the protein. Our results demonstrate that S1-S4 domains exhibit extensive interactions with lipids and that these domains are heavily hydrated when embedded in a membrane. We also find evidence for preferential interactions of anionic lipids with S1-S4 domains and that these interactions have lifetimes on the timescale of ≤ 10(-3)s. Arg residues within S1-S4 domains are well hydrated and are positioned in close proximity to lipids, exhibiting local interactions with both lipid headgroups and acyl chains. Comparative studies with a positively charged lipid lacking a phosphodiester group reveal that this lipid modification has only modest effects on the structure and hydration of S1-S4 domains. Taken together, our results demonstrate that Arg residues in S1-S4 voltage-sensing domains reside in close proximity to the hydrophobic interior of the membrane yet are well hydrated, a requirement for carrying charge and driving protein motions in response to changes in membrane voltage. Published by Elsevier Ltd.
Components interaction in timber framed masonry structures subjected to lateral forces
Directory of Open Access Journals (Sweden)
Andreea DUTU
2012-07-01
Full Text Available Structures with timber framed masonry represent a special typology that is frequently found in Europe and other countries of the world. They are traditional buildings, non-engineered, which showed an unexpected redundancy during earthquakes where reinforced concrete buildings (improperly constructed collapsed. In the paper, aspects regarding the interaction between timber elements and masonry are mainly addressed, that were observed both in experimental studies, but also in the in situ seismic behavior of this type of structure during important earthquakes.
Seismic analysis of a large LMFBR with fluid-structure interactions
International Nuclear Information System (INIS)
Ma, D.C.
1985-01-01
The seismic analysis of a large LMFBR with many internal components and structures is presented. Both vertical and horizontal seismic excitations are considered. The important hydrodynamic phenomena such as fluid-structure interaction, sloshing, fluid coupling and fluid inertia effects are included in the analysis. The results of this study are discussed in detail. Information which is useful to the design of future reactions under seismic conditions is also given. 4 refs., 12 figs
Directory of Open Access Journals (Sweden)
Vladimir A. Terekhov
2015-09-01
Full Text Available SOI (silicon-on-insulator structures with strained and unstrained silicon layers were studied by ultrasoft X-ray emission spectroscopy and X-ray absorption near edge structure spectroscopy with the use of synchrotron radiation techniques. Analysis of X-ray data has shown a noticeable transformation of the electron energy spectrum and local partial density of states distribution in valence and conduction bands in the strained silicon layer of the SOI structure. USXES Si L2,3 spectra analysis revealed a decrease of the distance between the L2v′ и L1v points in the valence band of the strained silicon layer as well as a shift of the first two maxima of the XANES first derivation spectra to the higher energies with respect to conduction band bottom Ec. At the same time the X-ray standing waves of synchrotron radiation (λ~12–20 nm are formed in the silicon-on-insulator structure with and without strains of the silicon layer. Moreover changing the synchrotron radiation grazing angle θ by 2° leads to a change of the electromagnetic field phase to the opposite.
Identification of structural protein-protein interactions of herpes simplex virus type 1.
Lee, Jin H; Vittone, Valerio; Diefenbach, Eve; Cunningham, Anthony L; Diefenbach, Russell J
2008-09-01
In this study we have defined protein-protein interactions between the structural proteins of herpes simplex virus type 1 (HSV-1) using a LexA yeast two-hybrid system. The majority of the capsid, tegument and envelope proteins of HSV-1 were screened in a matrix approach. A total of 40 binary interactions were detected including 9 out of 10 previously identified tegument-tegument interactions (Vittone, V., Diefenbach, E., Triffett, D., Douglas, M.W., Cunningham, A.L., and Diefenbach, R.J., 2005. Determination of interactions between tegument proteins of herpes simplex virus type 1. J. Virol. 79, 9566-9571). A total of 12 interactions involving the capsid protein pUL35 (VP26) and 11 interactions involving the tegument protein pUL46 (VP11/12) were identified. The most significant novel interactions detected in this study, which are likely to play a role in viral assembly, include pUL35-pUL37 (capsid-tegument), pUL46-pUL37 (tegument-tegument) and pUL49 (VP22)-pUS9 (tegument-envelope). This information will provide further insights into the pathways of HSV-1 assembly and the identified interactions are potential targets for new antiviral drugs.
Structural similarity-based predictions of protein interactions between HIV-1 and Homo sapiens
Directory of Open Access Journals (Sweden)
Gomez Shawn M
2010-04-01
Full Text Available Abstract Background In the course of infection, viruses such as HIV-1 must enter a cell, travel to sites where they can hijack host machinery to transcribe their genes and translate their proteins, assemble, and then leave the cell again, all while evading the host immune system. Thus, successful infection depends on the pathogen's ability to manipulate the biological pathways and processes of the organism it infects. Interactions between HIV-encoded and human proteins provide one means by which HIV-1 can connect into cellular pathways to carry out these survival processes. Results We developed and applied a computational approach to predict interactions between HIV and human proteins based on structural similarity of 9 HIV-1 proteins to human proteins having known interactions. Using functional data from RNAi studies as a filter, we generated over 2000 interaction predictions between HIV proteins and 406 unique human proteins. Additional filtering based on Gene Ontology cellular component annotation reduced the number of predictions to 502 interactions involving 137 human proteins. We find numerous known interactions as well as novel interactions showing significant functional relevance based on supporting Gene Ontology and literature evidence. Conclusions Understanding the interplay between HIV-1 and its human host will help in understanding the viral lifecycle and the ways in which this virus is able to manipulate its host. The results shown here provide a potential set of interactions that are amenable to further experimental manipulation as well as potential targets for therapeutic intervention.
International Nuclear Information System (INIS)
Kaushal, Prem Singh; Talawar, Ramappa K.; Varshney, Umesh; Vijayan, M.
2010-01-01
The molecule of uracil-DNA glycosylase from M. tuberculosis exhibits domain motion on binding to DNA or a proteinaceous inhibitor. The highly conserved DNA-binding region interacts with a citrate ion in the structure. Uracil N-glycosylase (Ung) is the most thoroughly studied of the group of uracil DNA-glycosylase (UDG) enzymes that catalyse the first step in the uracil excision-repair pathway. The overall structure of the enzyme from Mycobacterium tuberculosis is essentially the same as that of the enzyme from other sources. However, differences exist in the N- and C-terminal stretches and some catalytic loops. Comparison with appropriate structures indicate that the two-domain enzyme closes slightly when binding to DNA, while it opens slightly when binding to the proteinaceous inhibitor Ugi. The structural changes in the catalytic loops on complexation reflect the special features of their structure in the mycobacterial protein. A comparative analysis of available sequences of the enzyme from different sources indicates high conservation of amino-acid residues in the catalytic loops. The uracil-binding pocket in the structure is occupied by a citrate ion. The interactions of the citrate ion with the protein mimic those of uracil, in addition to providing insights into other possible interactions that inhibitors could be involved in
Zhao, Mengxian; Chen, Shihui
2018-01-01
The purpose of this study was to investigate the effects of structured physical activity program on social interaction and communication of children with autism spectrum disorder (ASD). Fifty children with ASD from a special school were randomly divided into experimental and control groups. 25 children with ASD were placed in the experimental group, and the other 25 children as the control group participated in regular physical activity. A total of forty-one participants completed the study. A 12-week structured physical activity program was implemented with a total of 24 exercise sessions targeting social interaction and communication of children with ASD, and a quasi-experimental design was used for this study. Data were collected using quantitative and qualitative instruments. SSIS and ABLLS-R results showed that an overall improvement in social skills and social interaction for the experimental group across interim and posttests, F = 8.425, p = 0.001 ( p social interaction, and self-control subdomains ( p 0.005). The study concluded that the special structured physical activity program positively influenced social interaction and communication skills of children with ASD, especially in social skills, communication, prompt response, and frequency of expression.
Zhao, Mengxian
2018-01-01
The purpose of this study was to investigate the effects of structured physical activity program on social interaction and communication of children with autism spectrum disorder (ASD). Fifty children with ASD from a special school were randomly divided into experimental and control groups. 25 children with ASD were placed in the experimental group, and the other 25 children as the control group participated in regular physical activity. A total of forty-one participants completed the study. A 12-week structured physical activity program was implemented with a total of 24 exercise sessions targeting social interaction and communication of children with ASD, and a quasi-experimental design was used for this study. Data were collected using quantitative and qualitative instruments. SSIS and ABLLS-R results showed that an overall improvement in social skills and social interaction for the experimental group across interim and posttests, F = 8.425, p = 0.001 (p social interaction, and self-control subdomains (p 0.005). The study concluded that the special structured physical activity program positively influenced social interaction and communication skills of children with ASD, especially in social skills, communication, prompt response, and frequency of expression. PMID:29568743
Structural Consequences of Anionic Host-Cationic Guest Interactions in a Supramolecular Assembly
Energy Technology Data Exchange (ETDEWEB)
Pluth, Michael D.; Johnson, Darren W.; Szigethy, Geza; Davis, Anna V.; Teat, Simon J.; Oliver, Allen G.; Bergman, Robert G.; Raymond, Kenneth N.
2008-07-09
The molecular structure of the self-assembled supramolecular assembly [M{sub 4}L{sub 6}]{sup 12-} has been explored with different metals (M = Ga{sup III}, Fe{sup III}, Ti{sup IV}) and different encapsulated guests (NEt{sub 4}{sup +}, BnNMe{sub 3}{sup +}, Cp{sub 2}Co{sup +}, Cp*{sub 2}Co{sup +}) by X-ray crystallography. While the identity of the metal ions at the vertices of the M{sub 4}L{sub 6} structure is found to have little effect on the assembly structure, encapsulated guests significantly distort the size and shape of the interior cavity of the assembly. Cations on the exterior of the assembly are found to interact with the assembly through either {pi}-{pi}, cation-{pi}, or CH-{pi} interactions. In some cases, the exterior guests interact with only one assembly, but cations with the ability to form multiple {pi}-{pi} interactions are able to interact with adjacent assemblies in the crystal lattice. The solvent accessible cavity of the assembly is modeled using the rolling probe method and found to range from 253-434 {angstrom}{sup 3}, depending on the encapsulated guest. Based on the volume of the guest and the volume of the cavity, the packing coefficient for each host-guest complex is found to range from 0.47-0.67.
Nonlinear soil-structure interaction analysis of SIMQUAKE II. Final report
International Nuclear Information System (INIS)
Vaughan, D.K.; Isenberg, J.
1982-04-01
This report describes an analytic method for modeling of soil-structure interaction (SSI) for nuclear power plants in earthquakes and discusses its application to SSI analyses of SIMQUAKE II. The method is general and can be used to simulate a three-dimensional structural geometry, nonlinear site characteristics and arbitrary input ground shaking. The analytic approach uses the soil island concept to reduce SSI models to manageable size and cost. Nonlinear constitutive behavior of the soil is represented by the nonlinear, kinematic cap model. In addition, a debonding-rebonding soil-structure interface model is utilized to represent nonlinear effects which singificantly alter structural response in the SIMQUAKE tests. STEALTH, an explicit finite difference code, is used to perform the dynamic, soil-structure interaction analyses. Several two-dimensional posttest SSI analyses of model containment structures in SIMQUAKE II are performed and results compared with measured data. These analyses qualify the analytic method. They also show the importance of including debonding-rebonding at the soil-structure interface. Sensitivity of structural response to compaction characteristics of backfill material is indicated
Seismic sensitivity study of a generic CANDU nuclear power plant: Soil-structure interaction
International Nuclear Information System (INIS)
Lee, L.S.S.; Duff, C.G.
1983-01-01
The seismic sensitivity and capability study for a generic CANDU Plant is part of an overall development program of design standardization. The purpose of this paper is to investigate the sensitivities of structural responses and floor response spectra (FRS) to variations of structural and soil parameters. In the seismic design standardization, a wide range of soil conditions is considered and the envelopes of the resulting site spectra (soil-structure interaction effect) are then used for the design of the generic plant. The nuclear island structures considered herein have different relative stiffness and one of them has two layout/structure schemes: one is relatively flexible and the other is moderately stiff. In the preliminary phase of the seismic sensitivity study presented hereby, the soil-structure interaction seismic analysis is based on the half-space modelling (soil-spring lumped-mass) method and the response spectrum method for the seismic responses. Distinct patterns and sensitivity of the site spectrum analysis for structure schemes of different relative stiffness and for different structural elevations are observed and discussed. (orig.)
Soil structure interaction analysis for the US NRC seismic safety margins research program
International Nuclear Information System (INIS)
Johnson, J.J.
1979-01-01
The soil structure interaction project is described. The initial portion of this task concentrates on defining the state-of-the-art in the analysis of the soil structure interaction phenomenon, an assessment of those aspects of the phenomenon which significantly affect structural response, and recommendations for future development of analytical techniques and their verification. A series of benchmark analytical and test problems for which analytical techniques may be evaluated are also sought. This assessment is to be performed in the context of nuclear power plant structures; i.e., massive stiff structures arranged functionally on a particular site. The best estimate methodology will be utilized to develop transfer functions for the overall systems model. These transfer functions will operate on the free-field ground motion yielding the structural base mat response and selected in-structure response quantities for the particular site being analyzed. The transfer functions will depend on a number of parameters, e.g., soil configuration, soil material properties, frequency of the excitation, structural properties, etc. A limited comparison of alternative methods of analysis including a nonlinear analysis will be performed
Yata, Vinod Kumar; Thapa, Arun; Mattaparthi, Venkata Satish Kumar
2015-01-01
Urease (EC 3.5.1.5., urea amidohydrolase) catalyzes the hydrolysis of urea to ammonia and carbon dioxide. Urease is present to a greater abundance in plants and plays significant role related to nitrogen recycling from urea. But little is known about the structure and function of the urease derived from the Arabidopsis thaliana, the model system of choice for research in plant biology. In this study, a three-dimensional structural model of A. thaliana urease was constructed using computer-aided molecular modeling technique. The characteristic structural features of the modeled structure were then studied using atomistic molecular dynamics simulation. It was observed that the modeled structure was stable and regions between residues index (50-80, 500-700) to be significantly flexible. From the docking studies, we detected the possible binding interactions of modeled urease with urea. Ala399, Ile675, Thr398, and Thr679 residues of A. thaliana urease were observed to be significantly involved in binding with the substrate urea. We also compared the docking studies of ureases from other sources such as Canavalia ensiformis, Helicobacter pylori, and Bacillus pasteurii. In addition, we carried out mutation analysis to find the highly mutable amino acid residues of modeled A. thaliana urease. In this particular study, we observed Met485, Tyr510, Ser786, Val426, and Lys765 to be highly mutable amino acids. These results are significant for the mutagenesis analysis. As a whole, this study expounds the salient structural features as well the binding interactions of the modeled structure of A. thaliana urease.
Combs, Steven A; Mueller, Benjamin K; Meiler, Jens
2018-05-29
Partial covalent interactions (PCIs) in proteins, which include hydrogen bonds, salt bridges, cation-π, and π-π interactions, contribute to thermodynamic stability and facilitate interactions with other biomolecules. Several score functions have been developed within the Rosetta protein modeling framework that identify and evaluate these PCIs through analyzing the geometry between participating atoms. However, we hypothesize that PCIs can be unified through a simplified electron orbital representation. To test this hypothesis, we have introduced orbital based chemical descriptors for PCIs into Rosetta, called the PCI score function. Optimal geometries for the PCIs are derived from a statistical analysis of high-quality protein structures obtained from the Protein Data Bank (PDB), and the relative orientation of electron deficient hydrogen atoms and electron-rich lone pair or π orbitals are evaluated. We demonstrate that nativelike geometries of hydrogen bonds, salt bridges, cation-π, and π-π interactions are recapitulated during minimization of protein conformation. The packing density of tested protein structures increased from the standard score function from 0.62 to 0.64, closer to the native value of 0.70. Overall, rotamer recovery improved when using the PCI score function (75%) as compared to the standard Rosetta score function (74%). The PCI score function represents an improvement over the standard Rosetta score function for protein model scoring; in addition, it provides a platform for future directions in the analysis of small molecule to protein interactions, which depend on partial covalent interactions.
Interactions between fishes and the structure of fish communities in Dutch shallow, eutrophic lakes
Lammens, E.
1986-01-01
This thesis describes the structure of fish communities in Tjeukemeer (21 km ^{2}) and some other surrounding very eutrophic lakes and emphasizes the interactions of the fishes with each other and their food organisms (predation and (exploitative) competition). It is a compilation of seven
Finite element analysis of a fluid-structure interaction in flexible pipe ...
African Journals Online (AJOL)
The obtained mathematical system is constituted of four non-linear hyperbolic partial differential equations describing the wave propagation in both pipe wall and liquid flow. The fluid-structure interaction is found to be governed by Poisson's ratio. In this steady finite element method based on Galerkin formulation is applied.
Christensen, Peer; Fusaroli, Riccardo; Tylén, Kristian
2016-01-01
Where does linguistic structure come from? Recent gesture elicitation studies have indicated that constituent order (corresponding to for instance subject-verb-object, or SVO in English) may be heavily influenced by human cognitive biases constraining gesture production and transmission. Here we explore the alternative hypothesis that syntactic patterns are motivated by multiple environmental and social-interactional constraints that are external to the cognitive domain. In three experiments, we systematically investigate different motivations for structure in the gestural communication of simple transitive events. The first experiment indicates that, if participants communicate about different types of events, manipulation events (e.g. someone throwing a cake) and construction events (e.g. someone baking a cake), they spontaneously and systematically produce different constituent orders, SOV and SVO respectively, thus following the principle of structural iconicity. The second experiment shows that participants' choice of constituent order is also reliably influenced by social-interactional forces of interactive alignment, that is, the tendency to re-use an interlocutor's previous choice of constituent order, thus potentially overriding affordances for iconicity. Lastly, the third experiment finds that the relative frequency distribution of referent event types motivates the stabilization and conventionalization of a single constituent order for the communication of different types of events. Together, our results demonstrate that constituent order in emerging gestural communication systems is shaped and stabilized in response to multiple external environmental and social factors: structural iconicity, interactive alignment and distributional frequency. Copyright © 2015 Elsevier B.V. All rights reserved.
Cross-habitat interactions among bivalve species control community structure on intertidal flats
Donadi, S.; van der Heide, T.; van der Zee, E.M.; Eklöf, J.S.; van de Koppel, J.; Weerman, E.J.; Piersma, T.; Olff, H.; Eriksson, B.K.
2013-01-01
Increasing evidence shows that spatial interactions between sedentary organisms can structure communities and promote landscape complexity in many ecosystems. Here we tested the hypothesis that reef-forming mussels (Mytilus edulis L.), a dominant intertidal ecosystem engineer in the Wadden Sea,
Cross-habitat interactions among bivalve species control community structure on intertidal flats
Donadi, Serena; van der Heide, Tjisse; van der Zee, Els M.; Eklöf, Johan S.; van de Koppel, Johan; Weerman, Ellen J.; Piersma, Theunis; Olff, Han; Eriksson, Britas Klemens
Increasing evidence shows that spatial interactions between sedentary organisms can structure communities and promote landscape complexity in many ecosystems. Here we tested the hypothesis that reef-forming mussels (Mytilus edulis L.), a dominant intertidal ecosystem engineer in the Wadden Sea,
Humphrey, Laura Lynn
1989-01-01
Compared observations of family interactions among anorexic, bulimic-anorexic, bulimic, and normal families (N=74 families) consisting of father, mother, and teenage daughter. Benjamin's structural analysis of social behavior methodology differentiated clinical from normal families. Found unique patterns among subtypes of eating disorders which…
Bridge-in-a-Backpack(TM) task 3.1: investigating soil - structure interaction - experimental design.
2015-07-01
This report includes fulfillment of Task 3.1 of a multi-task contract to further enhance concrete filled FRP tubes, or : the Bridge in a Backpack. Task 3 is an investigation of soil-structure interaction for the FRP tubes. Task 3.1 is the : design of...
Demir Kaymak, Zeliha; Horzum, Mehmet Baris
2013-01-01
Current study tried to determine whether a relationship exists between readiness levels of the online learning students for online learning and the perceived structure and interaction in online learning environments. In the study, cross sectional survey model was used. The study was conducted with 320 voluntary students studying online learning…
Pool Structures: A New Type of Interaction Zones of Lithospheric Plate Flows
Garetskyi, R. G.; Leonov, M. G.
2018-02-01
Study of tectono-geodynamic clusters of the continental lithosphere (the Sloboda cluster of the East European Platform and the Pamir cluster of Central Asia) permitted identification of pool structures, which are a specific type of zone of intraplate interaction of rock masses.
CSIR Research Space (South Africa)
Oxtoby, Oliver F
2012-05-01
Full Text Available In this paper we detail a fast, fully-coupled, partitioned fluid–structure interaction (FSI) scheme. For the incompressible fluid, new fractional-step algorithms are proposed which make possible the fully implicit, but matrixfree, parallel solution...
Long-Distance Interactions Regulate the Structure and Resilience of Coastal Ecosystems
van de Koppel, J.; van der Heide, T.; Altieri, A.H.; Eriksson, B.K.; Bouma, T.J.; Olff, H.; Silliman, B.R.
2015-01-01
Mounting evidence indicates that spatial interactions are important in structuring coastal ecosystems. Until recently, however, most of this work has been focused on seemingly exceptional systems that are characterized by regular, self-organized patterns. In this review, we document that
Relationship of Sibling Structure and Interaction to Categorization Ability. Final Report.
Cicirelli, Victor G.; And Others
This study identified behaviors of sibling pairs interacting on a cognitive task and related these behaviors to sibling structure variables (age and sex of each sibling and age spacing between them) and to measure of cognitive abilities of the younger sibling. Subjects were 160 sibling pairs randomly selected from appropriate subpopulations of…
D5.3 Interaction between currents, wave, structure and subsoil
DEFF Research Database (Denmark)
Christensen, Erik Damgaard; Sumer, B. Mutlu; Schouten, Jan-Joost
2015-01-01
This chapter gives an introduction to deliverable D5.3 - Interaction between currents, waves, structure and subsoil – with respect to the MERMAID project. The deliverable focuses on the conditions in European waters such as the four sites that is addressed in the MERMAID project. The most important...
The Factor Structure and Screening Utility of the Social Interaction Anxiety Scale
Rodebaugh, Thomas L.; Woods, Carol M.; Heimberg, Richard G.; Liebowitz, Michael R.; Schneier, Franklin R.
2006-01-01
The widely used Social Interaction Anxiety Scale (SIAS; R. P. Mattick & J. C. Clarke, 1998) possesses favorable psychometric properties, but questions remain concerning its factor structure and item properties. Analyses included 445 people with social anxiety disorder and 1,689 undergraduates. Simple unifactorial models fit poorly, and models that…
Interaction energies and structures of the Li·(CO) n (n= 1–3 ...
Indian Academy of Sciences (India)
Home; Journals; Journal of Chemical Sciences; Volume 129; Issue 5. Interaction energies ... JAMAL N DAWOUD. Regular Article Volume 129 Issue 5 May 2017 pp 543-552 ... Abstract. The bonding and structures of lithium ion carbonyl complexes, Li⁺·(CO)1−3, were studied at the CCSD and MP2 levels of theories. A linear ...
Water hammer with fluid-structure interaction in thick-walled pipes
Tijsseling, A.S.
2007-01-01
A one-dimensional mathematical model is presented which describes the acoustic behaviour of thick-walled liquid-filled pipes. The model is based on conventional water-hammer and beam theories. Fluid–structure interaction (FSI) is taken into account. The equations governing straight pipes are derived
Simulation of the fluid structure interaction for an aerostatic bearing and a flexible substrate
Olieslagers, R.; Wild, M. de; Melick, S. van; Knaapen, R.
2014-01-01
The fluid structure interaction for an aerostatic bearing and a substrate is solved numerically by a semi-analytical model, programmed in the software package MATLAB. This semi-analytical model uses a fluidic network of resistances and capacities to solve the pressure field in the bearing channel.
High-order finite difference solution for 3D nonlinear wave-structure interaction
DEFF Research Database (Denmark)
Ducrozet, Guillaume; Bingham, Harry B.; Engsig-Karup, Allan Peter
2010-01-01
This contribution presents our recent progress on developing an efficient fully-nonlinear potential flow model for simulating 3D wave-wave and wave-structure interaction over arbitrary depths (i.e. in coastal and offshore environment). The model is based on a high-order finite difference scheme O...
Alting, A.C.; Hamer, R.J.; Kruif, de C.G.
2003-01-01
We identified the contribution of covalent and noncovalent interactions to the scaling behavior of the structural and rheological properties in a cold gelling protein system. The system we studied consisted of two types of whey protein aggregates, equal in size but different in the amount of
International Nuclear Information System (INIS)
Bauer, J.
1980-01-01
Thesis dealing with the analysis of earthquake response of structures. In order to achieve a reliable risk assessment, the results of the seismic risk analysis have to be seen in an overall view together with the results of stochastic vibrational analyses, and the data on maximum supportable stresses of the structure. Taking into account stochastic seismic focus models and calculation methods is of special significance in this connection. Based upon well-known seismic risk assessment models, the calculation of the annual probability for exceeding the acceleration level is carried out also considering the length of the failure zone, assuming that the energy released during an earthquake is uniformly, distributed over this fracture zone. The strong influence of local parameters on the annual exceeding probability is shown by a sensitivity analysis. (orig./RW) [de
Earthquake response analyses of soil-structure system considering kinematic interaction
International Nuclear Information System (INIS)
Murakami, H.; Yokono, K.; Miura, S.; Ishii, K.
1985-01-01
Improvement of soil-structure interaction analysis has been one of major concerns in earthquake engineering field, especially in nuclear industries, to evaluate the safety of structure accurately under earthquake events. This research aims to develop a rational analytical tool which considers effect of the 'kinematic interaction' satisfactory with a proposed simple low-pass filter. In this paper, first the effect of the kinematic interaction is investigated based on earthquake response analysis of a reactor building using the practical design models: the spring-mass-dashpot system and the 'lattice model', in which a building and soil medium are modeled by a system of lumped masses. Next, the filter is developed based on parametrical studies with various sizes of depth and width of foundations embedded in two-layers soil, which represents more general soil condition in practical designs compared with a homogeneous soil medium. (orig.)
Structure and interactions of the human programmed cell death 1 receptor.
Cheng, Xiaoxiao; Veverka, Vaclav; Radhakrishnan, Anand; Waters, Lorna C; Muskett, Frederick W; Morgan, Sara H; Huo, Jiandong; Yu, Chao; Evans, Edward J; Leslie, Alasdair J; Griffiths, Meryn; Stubberfield, Colin; Griffin, Robert; Henry, Alistair J; Jansson, Andreas; Ladbury, John E; Ikemizu, Shinji; Carr, Mark D; Davis, Simon J
2013-04-26
PD-1, a receptor expressed by T cells, B cells, and monocytes, is a potent regulator of immune responses and a promising therapeutic target. The structure and interactions of human PD-1 are, however, incompletely characterized. We present the solution nuclear magnetic resonance (NMR)-based structure of the human PD-1 extracellular region and detailed analyses of its interactions with its ligands, PD-L1 and PD-L2. PD-1 has typical immunoglobulin superfamily topology but differs at the edge of the GFCC' sheet, which is flexible and completely lacks a C" strand. Changes in PD-1 backbone NMR signals induced by ligand binding suggest that, whereas binding is centered on the GFCC' sheet, PD-1 is engaged by its two ligands differently and in ways incompletely explained by crystal structures of mouse PD-1 · ligand complexes. The affinities of these interactions and that of PD-L1 with the costimulatory protein B7-1, measured using surface plasmon resonance, are significantly weaker than expected. The 3-4-fold greater affinity of PD-L2 versus PD-L1 for human PD-1 is principally due to the 3-fold smaller dissociation rate for PD-L2 binding. Isothermal titration calorimetry revealed that the PD-1/PD-L1 interaction is entropically driven, whereas PD-1/PD-L2 binding has a large enthalpic component. Mathematical simulations based on the biophysical data and quantitative expression data suggest an unexpectedly limited contribution of PD-L2 to PD-1 ligation during interactions of activated T cells with antigen-presenting cells. These findings provide a rigorous structural and biophysical framework for interpreting the important functions of PD-1 and reveal that potent inhibitory signaling can be initiated by weakly interacting receptors.
Coupling of impedance functions to nuclear reactor building for soil-structure interaction analysis
International Nuclear Information System (INIS)
Danisch, R.; Delinic, K.; Trbojevic, V.M.
1991-01-01
Finite element model of a nuclear reactor building is coupled to complex soil impedance functions and soil-structure-interaction analysis is carried out in frequency domain. In the second type of analysis applied in this paper, soil impedance functions are used to evaluate equivalent soil springs and dashpots of soil. These are coupled to the structure model in order to carry out the time marching analysis. Three types of soil profiles are considered: hard, medium and soft. Results of two analyzes are compared on the same structural model. Equivalent soil springs and dashpots are determined using new method based on the least square approximation. (author)
Seismic soil-structure-equipment interaction analysis of unit 5/6, Kozloduy NPP
Energy Technology Data Exchange (ETDEWEB)
Kostov, M [Bulgarian Academy of Sciences, Central Laboratory for Seismic Mechanics and Earthquake Engineering, Sofia (Bulgaria)
1995-07-01
This research project is aimed to analyse problems of soil-structure-equipment interaction under seismic excitation in case of Kozloduy NPP. Reevaluation and upgrading of Kozloduy NPP has started after 1977 Vrancea earthquake. New Safe Shutdown Earthquake (SSE) level was defined, upgrading most of structural equipment was performed, seismic instrumentation was installed. New investigations were initiated after 1990 IAEA mission visited the site. A comprehensive site confirmation project was started with a subsequent structural and equipment reevaluation and upgrading. This work deals with Units 5 and 6 of WWER-1000 type only.
RNA-Pareto: interactive analysis of Pareto-optimal RNA sequence-structure alignments.
Schnattinger, Thomas; Schöning, Uwe; Marchfelder, Anita; Kestler, Hans A
2013-12-01
Incorporating secondary structure information into the alignment process improves the quality of RNA sequence alignments. Instead of using fixed weighting parameters, sequence and structure components can be treated as different objectives and optimized simultaneously. The result is not a single, but a Pareto-set of equally optimal solutions, which all represent different possible weighting parameters. We now provide the interactive graphical software tool RNA-Pareto, which allows a direct inspection of all feasible results to the pairwise RNA sequence-structure alignment problem and greatly facilitates the exploration of the optimal solution set.
International Nuclear Information System (INIS)
Llambias, J.M.
1993-01-01
The seismic loading information for use in the seismic design of equipment and minor structures within a nuclear power plant is determined from a dynamic response analysis of the building in which they are located. This dynamic response analysis needs to capture the global response of both the building structure and adjacent soil and is commonly referred to as a soil structure interaction (SSI) analysis. NNC have developed a simple and cost effective methodology for the seismic SSI analysis of buildings in a PWR nuclear power station at a UK soft site. This paper outlines the NNC methodology and describes the approach adopted for its validation
International Nuclear Information System (INIS)
Cao Dongsheng; Liu Shao; Xu Qingsong; Lu Hongmei; Huang Jianhua; Hu Qiannan; Liang Yizeng
2012-01-01
Highlights: ► Drug–target interactions are predicted using an extended SAR methodology. ► A drug–target interaction is regarded as an event triggered by many factors. ► Molecular fingerprint and CTD descriptors are used to represent drugs and proteins. ► Our approach shows compatibility between the new scheme and current SAR methodology. - Abstract: The identification of interactions between drugs and target proteins plays a key role in the process of genomic drug discovery. It is both consuming and costly to determine drug–target interactions by experiments alone. Therefore, there is an urgent need to develop new in silico prediction approaches capable of identifying these potential drug–target interactions in a timely manner. In this article, we aim at extending current structure–activity relationship (SAR) methodology to fulfill such requirements. In some sense, a drug–target interaction can be regarded as an event or property triggered by many influence factors from drugs and target proteins. Thus, each interaction pair can be represented theoretically by using these factors which are based on the structural and physicochemical properties simultaneously from drugs and proteins. To realize this, drug molecules are encoded with MACCS substructure fingerings representing existence of certain functional groups or fragments; and proteins are encoded with some biochemical and physicochemical properties. Four classes of drug–target interaction networks in humans involving enzymes, ion channels, G-protein-coupled receptors (GPCRs) and nuclear receptors, are independently used for establishing predictive models with support vector machines (SVMs). The SVM models gave prediction accuracy of 90.31%, 88.91%, 84.68% and 83.74% for four datasets, respectively. In conclusion, the results demonstrate the ability of our proposed method to predict the drug–target interactions, and show a general compatibility between the new scheme and current SAR
Directory of Open Access Journals (Sweden)
Móczár Balázs
2016-06-01
Full Text Available Design and modelling of raft foundations and selecting the value of coefficient of vertical subgrade reaction are still actively discussed topics in geotechnical and structural engineering. In everyday practice, soil–structure interaction is mostly taken into account by using the theory of ‘beam on elastic foundation’, in which the soil is substituted by a certain set of coefficients of subgrade reaction. In this study, finite element analysis of a building was performed using a geotechnical software (Plaxis 3D, which is capable of modelling the subsoil as a continuum, and a structural software (Axis VM, which uses the concept of ‘beam on elastic foundation’. The evaluation of the results and recommendations for everyday engineering practice are introduced in this paper.
DEFF Research Database (Denmark)
Bucinskas, Paulius; Andersen, Lars Vabbersgaard; Persson, Kent
2016-01-01
Construction of high speed railway lines has been an increasing trend in recent years. Countries like Denmark and Sweden plan to expand and upgrade their railways to accommodate high-speed traffic. To benefit from the full potential of the reduced commuting times, these lines must pass through...... densely populated urban areas with the collateral effect of increased noise and vibrations levels. This paper aims to quantify the vibrations levels in the area surrounding an elevated railway line built as a multi-span bridge structure. The proposed model employs finite-element analysis to model......-space. The paper analyses the effects of structure-soil-structure interaction on the dynamic behaviour of the surrounding soil surface. The effects of different soil stratification and material properties as well as different train speeds are assessed. Finally, the drawbacks of simplifying the numerical model...
Substructure method of soil-structure interaction analysis for earthquake loadings
Energy Technology Data Exchange (ETDEWEB)
Park, H. G.; Joe, Y. H. [Industrial Development Research Center, Univ. of Incheon, Incheon (Korea, Republic of)
1997-07-15
Substructure method has been preferably adopted for soil-structure interaction analysis because of its simplicity and economy in practical application. However, substructure method has some limitation in application and does not always give reliable results especially for embedded structures or layered soil conditions. The objective of this study to validate the reliability of the soil-structure interaction analysis results by the proposed substructure method using lumped-parameter model and suggest a method of seismic design of nuclear power plant structures with specific design conditions. In this study, theoretic background and modeling technique of soil-structure interaction phenomenon have been reviewed and an analysis technique based on substructure method using lumped-parameter model has been suggested. The practicality and reliability of the proposed method have been validated through the application of the method to the seismic analysis of the large-scale seismic test models. A technical guide for practical application and evaluation of the proposed method have been also provided through the various type parametric.
Time Crystal Platform: From Quasicrystal Structures in Time to Systems with Exotic Interactions
Giergiel, Krzysztof; Miroszewski, Artur; Sacha, Krzysztof
2018-04-01
Time crystals are quantum many-body systems that, due to interactions between particles, are able to spontaneously self-organize their motion in a periodic way in time by analogy with the formation of crystalline structures in space in condensed matter physics. In solid state physics properties of space crystals are often investigated with the help of external potentials that are spatially periodic and reflect various crystalline structures. A similar approach can be applied for time crystals, as periodically driven systems constitute counterparts of spatially periodic systems, but in the time domain. Here we show that condensed matter problems ranging from single particles in potentials of quasicrystal structure to many-body systems with exotic long-range interactions can be realized in the time domain with an appropriate periodic driving. Moreover, it is possible to create molecules where atoms are bound together due to destructive interference if the atomic scattering length is modulated in time.
Directory of Open Access Journals (Sweden)
Tian Jiande
2015-01-01
Full Text Available A kind of semi-active hydraulic engine mount is studied in this paper. After careful analysis of its structure and working principle, the FEA simulation of it was divided into two cases. One is the solenoid valve is open, so the air chamber connects to the atmosphere, and Fluid-Structure Interaction was used. Another is the solenoid valve is closed, and the air chamber has pressure, so Fluid-Structure-Gas Interaction was used. The test of this semi-active hydraulic engine mount was carried out to compare with the simulation results, and verify the accuracy of the model. Then the dynamic characteristics-dynamic stiffness and damping angle were analysed by simulation and test. This paper provides theoretical support for the development and optimization of the semi-active hydraulic engine mount.
A rheonomic model for the dynamical analysis of the structure-soil interaction
International Nuclear Information System (INIS)
Chiroiu, V.; Nicolae, V.
1993-01-01
The dynamical analysis of the structure-soil interaction requires an adequate modeling of the geometrical radiation phenomenon (g.r.) i.e. the propagation of the vibrating energy of the structure in the infinite medium. Newton's law of motion is not including the g.r., considered in this paper like an irreversible phenomenon. To incorporate this, a new wave motion equation is proposed, according to a complete analysis of the structure-soil interactions with an adequate formulation of the g.r. By using a system of fundamental dynamical solutions, the rheonom constraint applied to the half-space is represented as a restriction to the displacement solutions. A dimensionless formulation of the problem and the variation of dynamical and energetical quantities in respect to the frequency, as according to the diagram of the characteristic curve of g.r. are presented numerically. Sample results showing the importance of radiation energy for several motions are also shown
Flow-structure Interaction Modeling of a Fish Caudal Fin during Steady Swimming
Liu, Geng; Geng, Biao; Zheng, Xudong; Xue, Qian; Dong, Haibo
2017-11-01
It's widely thought that the flexibilities of fish fins play critical roles in propulsive performance enhancement (such as thrust augment and efficiency improvement) in nature. In order to explore the formation mechanisms of the fish fin's flexible morphing and its hydrodynamic benefits as well, a high-fidelity flow-structure/membrane interaction modeling of the fish caudal fin is conducted in this work. Following the realistic configuration of the fish caudal fin, a thin membrane supported by a series of beams is constructed. The material properties of the membrane and the beams are reversely determined by the realistic fin morphing obtained from the high-speed videos and the high fidelity flow-structure interaction simulations. With the accurate material property, we investigate the interplay between structure, kinematics and fluid flow in caudal fin propulsion. Detailed analyses on the relationship between the flexural stiffness, fin morphing patterns, hydrodynamic forces and vortex dynamics are then conducted.
Description of a general method to compute the fluid-structure interaction
International Nuclear Information System (INIS)
Jeanpierre, F.; Gibert, R.J.; Hoffmann, A.; Livolant, M.
1979-01-01
The vibrational characteristics of a structure in air may be considerably modified when the structure is immersed in a dense fluid. Such fluid structure interaction effects are important for the seismic or flow induced vibrational studies of various nuclear equipments, as for example the PWR internals, the fast reactor vessels, heat exchangers and fuel elements. In some simple situations, the fluid effects can be simulate by added masses, but in general, they are much more complicated. A general formulation to calculate precisely the vibrational behaviour of structures containing dense fluids is presented in this paper. That formulation can be easily introduced in finite elements computer codes, the fluid being described by special fluid elements. Its use is in principle limited to the linear range: small movements of structures, small pressure fluctuations. (orig.)
Directory of Open Access Journals (Sweden)
Fei Wang
Full Text Available Fluid-structural coupling occurs when microcantilever sensors vibrate in a fluid. Due to the complexity of the mechanical characteristics of microcantilevers and lack of high-precision microscopic mechanical testing instruments, effective methods for studying the fluid-structural coupling of microcantilevers are lacking, especially for non-rectangular microcantilevers. Here, we report fluid-structure interactions (FSI of the cable-membrane structure via a macroscopic study. The simplified aeroelastic model was introduced into the microscopic field to establish a fluid-structure coupling vibration model for microcantilever sensors. We used the finite element method to solve the coupled FSI system. Based on the simplified aeroelastic model, simulation analysis of the effects of the air environment on the vibration of the commonly used rectangular microcantilever was also performed. The obtained results are consistent with the literature. The proposed model can also be applied to the auxiliary design of rectangular and non-rectangular sensors used in fluid environments.
Experimental investigation of modal interactions in a beam-mass structure using bispectrum
International Nuclear Information System (INIS)
Khan, K.A.
2001-01-01
Observations and results pertaining to experiments with a beam-mass structure are presented. The experiments were conducted with the objective of understanding and characterizing the nonlinear interactions that occur during the motions of the structure, through the use of third-order spectra (bispectrum and bicoherence spectrum). The structure, tuned for two-to-one internal (autoparametric) resonance between its first two modes. was harmonically excited. The effect of misalignment between the components of the structure on bispectrum was also contemplated. The experimental results are provided in the form of frequency spectra, phase portraits, frequency-response curves, bispectra, and bicoherence spectra. Experimental observations of transitions from periodic to modulated motions are also presented. The potential of bispectral estimates for detecting the quadratic phase coupling among the participating modes during bifurcations and modulated motions is also contemplated. The current study is also relevant to other parametrically resonant structures like ships, rings, shells, and arches, etc. (author)
A mixed implicit/explicit procedure for soil-structure interaction
International Nuclear Information System (INIS)
Kunar, R.R.
1982-01-01
This paper describes an efficient method for the solution of dynamic soil-structure interaction problems. The method which combines implicit and explicit time integration procedures is ideally suited to problems in which the structure is considered linear and the soil non-linear. The equations relating to the linear structures are integrated using an unconditionally stable implicit scheme while the non-linear soil is treated explicitly. The explicit method is ideally suited to non-linear calculations as there is no need for iterative techniques. The structural equations can also be integrated explicitly, but this generally requires a time step that is much smaller than that for the soil. By using an unconditionally stable implicit algorithm for the structure, the complete analysis can be performed using the time step for the soil. The proposed procedure leads to economical solutions with the soil non-linearities handled accurately and efficiently. (orig.)
Nicoludis, John M; Lau, Sze-Yi; Schärfe, Charlotta P I; Marks, Debora S; Weihofen, Wilhelm A; Gaudet, Rachelle
2015-11-03
Clustered protocadherin (Pcdh) proteins mediate dendritic self-avoidance in neurons via specific homophilic interactions in their extracellular cadherin (EC) domains. We determined crystal structures of EC1-EC3, containing the homophilic specificity-determining region, of two mouse clustered Pcdh isoforms (PcdhγA1 and PcdhγC3) to investigate the nature of the homophilic interaction. Within the crystal lattices, we observe antiparallel interfaces consistent with a role in trans cell-cell contact. Antiparallel dimerization is supported by evolutionary correlations. Two interfaces, located primarily on EC2-EC3, involve distinctive clustered Pcdh structure and sequence motifs, lack predicted glycosylation sites, and contain residues highly conserved in orthologs but not paralogs, pointing toward their biological significance as homophilic interaction interfaces. These two interfaces are similar yet distinct, reflecting a possible difference in interaction architecture between clustered Pcdh subfamilies. These structures initiate a molecular understanding of clustered Pcdh assemblies that are required to produce functional neuronal networks. Copyright © 2015 Elsevier Ltd. All rights reserved.
Directory of Open Access Journals (Sweden)
Mengxian Zhao
2018-01-01
Full Text Available The purpose of this study was to investigate the effects of structured physical activity program on social interaction and communication of children with autism spectrum disorder (ASD. Fifty children with ASD from a special school were randomly divided into experimental and control groups. 25 children with ASD were placed in the experimental group, and the other 25 children as the control group participated in regular physical activity. A total of forty-one participants completed the study. A 12-week structured physical activity program was implemented with a total of 24 exercise sessions targeting social interaction and communication of children with ASD, and a quasi-experimental design was used for this study. Data were collected using quantitative and qualitative instruments. SSIS and ABLLS-R results showed that an overall improvement in social skills and social interaction for the experimental group across interim and posttests, F=8.425, p=0.001 (p0.005. The study concluded that the special structured physical activity program positively influenced social interaction and communication skills of children with ASD, especially in social skills, communication, prompt response, and frequency of expression.
Electronic structure and exchange interactions in GdB{sub 4}
Energy Technology Data Exchange (ETDEWEB)
Baranovskiy, A., E-mail: andriy.baranovskiy@gmail.com; Grechnev, A.
2015-02-01
The electronic structure of the antiferromagnetic Shastry–Sutherland compound GdB{sub 4} has been analyzed with density functional theory and the all-electron full-potential linearized augmented-plane wave (FP-LAPW) code. Different magnetic configurations, including the realistic dimer one, have been considered. The exchange interactions were found to be J{sub 1}/k{sub B}=−12K and J{sub 2}/k{sub B}=−2–0.8K, where, J{sub 1} and J{sub 2} are the diagonal exchange interaction and the exchange interaction along the edges of a square, respectively. - Highlights: • Electronic structure of AFM Shastry–Sutherland compound GB{sub 4} is calculated. • The mechanism of exchange parameters evaluation within Heisenberg model is proposed. • Calculated exchange parameters are found to be in agreement with experimental data. • Higher-order exchange interactions are important for dimer structure stabilizing.
Directory of Open Access Journals (Sweden)
Wang Woei-Fuh
2008-03-01
Full Text Available Abstract Background With the abundant information produced by microarray technology, various approaches have been proposed to infer transcriptional regulatory networks. However, few approaches have studied subtle and indirect interaction such as genetic compensation, the existence of which is widely recognized although its mechanism has yet to be clarified. Furthermore, when inferring gene networks most models include only observed variables whereas latent factors, such as proteins and mRNA degradation that are not measured by microarrays, do participate in networks in reality. Results Motivated by inferring transcriptional compensation (TC interactions in yeast, a stepwise structural equation modeling algorithm (SSEM is developed. In addition to observed variables, SSEM also incorporates hidden variables to capture interactions (or regulations from latent factors. Simulated gene networks are used to determine with which of six possible model selection criteria (MSC SSEM works best. SSEM with Bayesian information criterion (BIC results in the highest true positive rates, the largest percentage of correctly predicted interactions from all existing interactions, and the highest true negative (non-existing interactions rates. Next, we apply SSEM using real microarray data to infer TC interactions among (1 small groups of genes that are synthetic sick or lethal (SSL to SGS1, and (2 a group of SSL pairs of 51 yeast genes involved in DNA synthesis and repair that are of interest. For (1, SSEM with BIC is shown to outperform three Bayesian network algorithms and a multivariate autoregressive model, checked against the results of qRT-PCR experiments. The predictions for (2 are shown to coincide with several known pathways of Sgs1 and its partners that are involved in DNA replication, recombination and repair. In addition, experimentally testable interactions of Rad27 are predicted. Conclusion SSEM is a useful tool for inferring genetic networks, and the
The boundary structure in the analysis of reversibly interacting systems by sedimentation velocity.
Zhao, Huaying; Balbo, Andrea; Brown, Patrick H; Schuck, Peter
2011-05-01
Sedimentation velocity (SV) experiments of heterogeneous interacting systems exhibit characteristic boundary structures that can usually be very easily recognized and quantified. For slowly interacting systems, the boundaries represent concentrations of macromolecular species sedimenting at different rates, and they can be interpreted directly with population models based solely on the mass action law. For fast reactions, migration and chemical reactions are coupled, and different, but equally easily discernable boundary structures appear. However, these features have not been commonly utilized for data analysis, for the lack of an intuitive and computationally simple model. The recently introduced effective particle theory (EPT) provides a suitable framework. Here, we review the motivation and theoretical basis of EPT, and explore practical aspects for its application. We introduce an EPT-based design tool for SV experiments of heterogeneous interactions in the software SEDPHAT. As a practical tool for the first step of data analysis, we describe how the boundary resolution of the sedimentation coefficient distribution c(s) can be further improved with a Bayesian adjustment of maximum entropy regularization to the case of heterogeneous interactions between molecules that have been previously studied separately. This can facilitate extracting the characteristic boundary features by integration of c(s). In a second step, these are assembled into isotherms as a function of total loading concentrations and fitted with EPT. Methods for addressing concentration errors in isotherms are discussed. Finally, in an experimental model system of alpha-chymotrypsin interacting with soybean trypsin inhibitor, we show that EPT provides an excellent description of the experimental sedimentation boundary structure of fast interacting systems. Published by Elsevier Inc.
Secondary structure of cell-penetrating peptides during interaction with fungal cells.
Gong, Zifan; Ikonomova, Svetlana P; Karlsson, Amy J
2018-03-01
Cell-penetrating peptides (CPPs) are peptides that cross cell membranes, either alone or while carrying molecular cargo. Although their interactions with mammalian cells have been widely studied, much less is known about their interactions with fungal cells, particularly at the biophysical level. We analyzed the interactions of seven CPPs (penetratin, Pep-1, MPG, pVEC, TP-10, MAP, and cecropin B) with the fungal pathogen Candida albicans using experiments and molecular simulations. Circular dichroism (CD) of the peptides revealed a structural transition from a random coil or weak helix to an α-helix occurs for all peptides when the solvent is changed from aqueous to hydrophobic. However, CD performed in the presence of C. albicans cells showed that proximity to the cell membrane is not necessarily sufficient to induce this structural transition, as penetratin, Pep-1, and MPG did not display a structural shift in the presence of cells. Monte Carlo simulations were performed to further probe the molecular-level interaction with the cell membrane, and these simulations suggested that pVEC, TP-10, MAP, and cecropin B strongly penetrate into the hydrophobic domain of the membrane lipid bilayer, inducing a transition to an α-helical conformation. In contrast, penetratin, Pep-1 and MPG remained in the hydrophilic region without a shift in conformation. The experimental data and MC simulations combine to explain how peptide structure affects their interaction with cells and their mechanism of translocation into cells (direct translocation vs. endocytosis). Our work also highlights the utility of combining biophysical experiments, biological experiments, and molecular modeling to understand biological phenomena. © 2017 The Protein Society.
Time-domain soil-structure interaction analysis of nuclear facilities
International Nuclear Information System (INIS)
Coleman, Justin L.; Bolisetti, Chandrakanth; Whittaker, Andrew S.
2016-01-01
The Nuclear Regulatory Commission (NRC) regulation 10 CFR Part 50 Appendix S requires consideration of soil-structure interaction (SSI) in nuclear power plant (NPP) analysis and design. Soil-structure interaction analysis for NPPs is routinely carried out using guidance provided in the ASCE Standard 4-98 titled “Seismic Analysis of Safety-Related Nuclear Structures and Commentary”. This Standard, which is currently under revision, provides guidance on linear seismic soil-structure-interaction (SSI) analysis of nuclear facilities using deterministic and probabilistic methods. A new appendix has been added to the forthcoming edition of ASCE Standard 4 to provide guidance for time-domain, nonlinear SSI (NLSSI) analysis. Nonlinear SSI analysis will be needed to simulate material nonlinearity in soil and/or structure, static and dynamic soil pressure effects on deeply embedded structures, local soil failure at the foundation-soil interface, nonlinear coupling of soil and pore fluid, uplift or sliding of the foundation, nonlinear effects of gaps between the surrounding soil and the embedded structure and seismic isolation systems, none of which can be addressed explicitly at present. Appendix B of ASCE Standard 4 provides general guidance for NLSSI analysis but will not provide a methodology for performing the analysis. This paper provides a description of an NLSSI methodology developed for application to nuclear facilities, including NPPs. This methodology is described as series of sequential steps to produce reasonable results using any time-domain numerical code. These steps require some numerical capabilities, such as nonlinear soil constitutive models, which are also described in the paper.
International Nuclear Information System (INIS)
Kuwabara, Y.; Ogiwara, Y.; Suzuki, T.; Tsuchiya, H.; Nakayama, M.
1981-01-01
It is generally recognized that the earthquake response of a structure can be significantly affected by the dynamic interaction between the structure and the surrounding soil. Dynamic soil-structure interaction effects are usually analyzed by using a lumped mass model or a finite element model. In the lumped mass model, the soil is represented by springs and dashpots based on the half-space elastic theory. Each model has its advantages and limitations. The Three Dimensional Thin Layered Element Theory has been developed by Dr. Hiroshi Tajimi based on the combined results of the abovementioned lumped mass model and finite element model. The main characteristic of this theory is that, in consideration and can be applied in the analysis of many problems in soil-structure interaction, such as those involving radiation damping, embedded structures, and multi-layered soil deposits. This paper describes test results on a small scale model used to prove the validity of the computer program based on the Thin Layered Element Theory. As a numerical example, the response analysis of a PWR nuclear power plant is carried out using this program. The vibration test model is simplified and the scale is 1/750 for line. The soil layer of the model is made of congealed gelatine. The test soil layer is 80 cm long, 35 cm wide and 10 cm thick. The super structure is a one mass model made of metal sheet spring and solid mass metal. As fixed inputs, sinusoidal waves (10, 20 gal level) are used. The displacements of the top and base of the super structure, and the accelerations and the displacements of the shaking table are measured. The main parameter of the test is the shear wave velocity of the soil layer. (orig./RW)
Zapata-Mesa, Natalya; Montoya-Bustamante, Sebastián; Murillo-García, Oscar E.
2017-11-01
Mutualistic interactions, such as seed dispersal, are important for the maintenance of structure and stability of tropical communities. However, there is a lack of information about spatial and temporal variation in plant-animal interaction networks. Thus, our goal was to assess the effect of bat's foraging strategies on temporal variation in the structure and robustness of bat-fruit networks in both a dry and a rain tropical forest. We evaluated monthly variation in bat-fruit networks by using seven structure metrics: network size, average path length, nestedness, modularity, complementary specialization, normalized degree and betweenness centrality. Seed dispersal networks showed variations in size, species composition and modularity; did not present nested structures and their complementary specialization was high compared to other studies. Both networks presented short path lengths, and a constantly high robustness, despite their monthly variations. Sedentary bat species were recorded during all the study periods and occupied more central positions than nomadic species. We conclude that foraging strategies are important structuring factors that affect the dynamic of networks by determining the functional roles of frugivorous bats over time; thus sedentary bats are more important than nomadic species for the maintenance of the network structure, and their conservation is a must.
Directory of Open Access Journals (Sweden)
Sathishkumar Natarajan
2015-12-01
Full Text Available Myrosinase, which is present in cruciferous plant species, plays an important role in the hydrolysis of glycosides such as glucosinolates and is involved in plant defense. Brassicaceae myrosinases are diverse although they share common ancestry, and structural knowledge about myrosinases from cabbage (Brassica oleracea was needed. To address this, we constructed a three-dimensional model structure of myrosinase based on Sinapis alba structures using Iterative Threading ASSEmbly Refinement server (I-TASSER webserver, and refined model coordinates were evaluated with ProQ and Verify3D. The resulting model was predicted with β/α fold, ten conserved N-glycosylation sites, and three disulfide bridges. In addition, this model shared features with the known Sinapis alba myrosinase structure. To obtain a better understanding of myrosinase–sinigrin interaction, the refined model was docked using Autodock Vina with crucial key amino acids. The key nucleophile residues GLN207 and GLU427 were found to interact with sinigrin to form a hydrogen bond. Further, 20-ns molecular dynamics simulation was performed to examine myrosinase–sinigrin complex stability, revealing that residue GLU207 maintained its hydrogen bond stability throughout the entire simulation and structural orientation was similar to that of the docked state. This conceptual model should be useful for understanding the structural features of myrosinase and their binding orientation with sinigrin.