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Sample records for burst oxidase homologues

  1. Strboh A homologue of NADPH oxidase regulates wound-induced oxidative burst and facilitates wound-healing in potato tubers.

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    Kumar, G N Mohan; Iyer, Suresh; Knowles, N Richard

    2007-12-01

    During 30-months of storage at 4 degrees C, potato (Solanum tuberosum L.) tubers progressively lose the ability to produce superoxide in response to wounding, resist microbial infection, and develop a suberized wound periderm. Using differentially aged tubers, we demonstrate that Strboh A is responsible for the wound-induced oxidative burst in potato and aging attenuates its expression. In vivo superoxide production and NADPH oxidase (NOX) activity from 1-month-old tubers increased to a maximum 18-24 h after wounding and then decreased to barely detectable levels by 72 h. Wounding also induced a 68% increase in microsomal protein within 18 h. These wound-induced responses were lost over a 25- to 30-month storage period. Superoxide production and NOX activity were inhibited by diphenylene iodonium chloride, a specific inhibitor of NOX, which in turn effectively inhibited wound-healing and increased susceptibility to microbial infection and decay in 1-month-old tubers. Wound-induced superoxide production was also inhibited by EGTA-mediated destabilization of membranes. The ability to restore superoxide production to EGTA-treated tissue with Ca(+2) declined with advancing tuber age, likely a consequence of age-related changes in membrane architecture. Of the five homologues of NOX (Strboh A-D and F), wounding induced the expression of Strboh A in 6-month-old tubers but this response was absent in tubers stored for 25-30 months. Strboh A thus mediates the initial burst of superoxide in response to wounding of potato tubers; loss of its expression increases the susceptibility to microbial infection and contributes to the age-induced loss of wound-healing ability.

  2. Isolation of a cotton NADP(H oxidase homologue induced by drought stress

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    NEPOMUCENO ALEXANDRE LIMA

    2000-01-01

    Full Text Available The aim of this study was to identify and isolate genes that are differentially expressed in four selected cotton (Gossypium hirsutum L. genotypes contrasting according to their tolerance to water deficit. The genotypes studied were Siokra L-23, Stoneville 506, CS 50 and T-1521. Physiological, morphological and developmental changes that confer drought tolerance in plants must have a molecular genetic basis. To identify and isolate the genes, the mRNA Differential Display (DD technique was used. Messenger RNAs differentially expressed during water deficit were identified, isolated, cloned and sequenced. The cloned transcript A12B15-5, a NADP(H oxidase homologue, was up regulated only during the water deficit stress and only in Siokra L-23, a drought tolerant genotype. Ribonuclease protection assay confirmed that transcription.

  3. Isolation of the respiratory burst oxidase: the role of a flavoprotein component.

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    Parkinson, J F; Gabig, T G

    1988-12-01

    The article reviews the enzymatic and electron transfer properties of a low-potential FAD-dependent flavoprotein that is a component of the NADPH-dependent O2-.-generating respiratory burst oxidase of phagocytes. Current methods available for isolation of the respiratory burst oxidase and the flavoprotein component of the complex are also reviewed. These studies and data obtained from affinity-labeling of respiratory burst oxidase components, suggest that the flavoprotein has a molecular weight of 65-67 kD. The prevailing evidence suggests that the flavoprotein functions as a dehydrogenase/electron transferase and can directly catalyse NADPH-dependent O2-.formation when isolated. However, in neutrophil plasma membranes, the prevailing evidence suggests that the flavoprotein functions primarily to transfer electrons from NADPH to cytochrome b-245 and that this latter redox component is the catalytic side of O2-.formation. A working model for the arrangement of the flavoprotein and cytochrome b-245 components of the respiratory burst oxidase in neutrophil membranes is proposed.

  4. Identification of NoxD/Pro41 as the homologue of the p22phox NADPH oxidase subunit in fungi.

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    Lacaze, Isabelle; Lalucque, Hervé; Siegmund, Ulrike; Silar, Philippe; Brun, Sylvain

    2015-03-01

    NADPH oxidases (Nox) are membrane complexes that produce O2(-). Researches in mammals, plants and fungi highlight the involvement of Nox-generated ROS in cell proliferation, differentiation and defense. In mammals, the core enzyme gp91(phox)/Nox2 is associated with p22(phox) forming the flavocytochrome b558 ready for activation by a cytosolic complex. Intriguingly, no homologue of the p22(phox) gene has been found in fungal genomes, questioning how the flavoenzyme forms. Using whole genome sequencing combined with phylogenetic analysis and structural studies, we identify the fungal p22(phox) homologue as being mutated in the Podospora anserina mutant IDC(509). Functional studies show that the fungal p22(phox), PaNoxD, acts along PaNox1, but not PaNox2, a second fungal gp91(phox) homologue. Finally, cytological analysis of functional tagged versions of PaNox1, PaNoxD and PaNoxR shows clear co-localization of PaNoxD and PaNox1 and unravel a dynamic assembly of the complex in the endoplasmic reticulum and in the vacuolar system.

  5. The respiratory burst oxidase of human neutrophils. Further studies of the purified enzyme.

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    Glass, G A; DeLisle, D M; DeTogni, P; Gabig, T G; Magee, B H; Markert, M; Babior, B M

    1986-10-05

    A superoxide-forming oxidase from activated human neutrophil membranes was solubilized by two slightly different methods, then purified by "dye-affinity" chromatography. Kinetic studies of the purified preparations gave Vmax values of 5-10 mumol of O-2/min/mg of protein, and Km values for NADH and NADPH that were in reasonable agreement with values determined previously using particulate and crude solubilized preparations of the respiratory burst oxidase. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis showed prominent bands at 67, 48, and 32 kDa, together with some minor contaminants, whereas gel electrophoresis under non-denaturing conditions gave a single major band that when eluted and re-electrophoresed in the presence of sodium dodecyl sulfate showed bands at 67, 48, 32 kDa. We believe that all three bands represent oxidase components. The flavin content of the purified enzyme was 20.4 +/- 2.0 S.E. pmol of FAD/microgram of protein, whereas heme averaged 0.1 +/- 0.02 pmol/microgram and ubiquinone could not be detected. Assuming that the enzyme is composed of one 67-kDa subunit, one 48-kDa subunit, and one 32-kDa subunit (i.e. that its molecular mass is approximately 150 kDa), it can be calculated to have a turnover number of 700-1500 min-1, in agreement with a value reported previously for oxidase in a particulate O-2-forming system (Cross, A. R., Parkinson, J. F., and Jones, O. T. G. (1985) Biochem. J. 226, 881-884), and to contain the following quantities of redox carriers (mol/mol): FAD, 3.0; heme, 0.015; ubiquinone, less than 0.06. It remains to be determined whether this preparation represents the complete respiratory burst oxidase or is only the pyridine nucleotide dehydrogenating component of a more complex enzyme.

  6. Cloning and expression analysis of the Ccrboh gene encoding respiratory burst oxidase in Citrullus colocynthis and grafting onto Citrullus lanatus (watermelon).

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    Si, Ying; Dane, Fenny; Rashotte, Aaron; Kang, Kwonkyoo; Singh, Narendra K

    2010-06-01

    A full-length drought-responsive gene Ccrboh, encoding the respiratory burst oxidase homologue (rboh), was cloned in Citrullus colocynthis, a very drought-tolerant cucurbit species. The robh protein, also named NADPH oxidase, is conserved in plants and animals, and functions in the production of reactive oxygen species (ROS). The Ccrboh gene accumulated in a tissue-specific pattern when C. colocynthis was treated with PEG, abscisic acid (ABA), salicylic acid (SA), jasmonic acid (JA), or NaCl, while the homologous rboh gene did not show any change in C. lanatus var. lanatus, cultivated watermelon, during drought. Grafting experiments were conducted using C. colocynthis or C. lanatus as the rootstock or scion. Results showed that the rootstock significantly affects gene expression in the scion, and some signals might be transported from the root to the shoot. Ccrboh in C. colocynthis was found to function early during plant development, reaching high mRNA transcript levels 3 d after germination. The subcellular location of Ccrboh was investigated by transient expression of the 35S::Ccrboh::GFP fusion construct in protoplasts. The result confirmed that Ccrboh is a transmembrane protein. Our data suggest that Ccrboh might be functionally important during the acclimation of plants to stress and also in plant development. It holds great promise for improving drought tolerance of other cucurbit species.

  7. Rapid deactivation of NADPH oxidase in neutrophils: continuous replacement by newly activated enzyme sustains the respiratory burst.

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    Akard, L P; English, D; Gabig, T G

    1988-07-01

    The cell-free system for activation of the neutrophil NADPH oxidase allowed us to examine activation of the oxidase in the absence of its NADPH-dependent turnover. The covalent sulfhydryl-modifying reagent N-ethylmaleimide completely inhibited the activation step (Ki = 40 mumol/L) in the cell-free system but had no effect on turnover of the preactivated particulate NADPH oxidase (up to 1 mmol/L). When N-ethylmaleimide was added to intact neutrophils during the period of maximal O2 generation in response to stimuli that activate the respiratory burst (phorbol myristate acetate, f-Met-Leu-Phe, opsonized zymosan, arachidonic acid), O2- generation ceased within seconds. Study of components of the cell-free activation system indicated that the cytosolic cofactor was irreversibly inhibited by N-ethylmaleimide whereas the N-ethylmaleimide-treated, membrane-associated oxidase could be activated by arachidonate and control cytosolic cofactor. Likewise, the cell-free system prepared from intact neutrophils that had been briefly exposed to N-ethylmaleimide and then washed reflected the effects of N-ethylmaleimide on the isolated cell-free components: cytosolic cofactor activity was absent, but the membrane oxidase remained fully activatable. Thus inhibition of oxidase activation by N-ethylamaleimide unmasked a rapid deactivation step that was operative in intact neutrophils but not in isolated particulate NADPH oxidase preparations. The demonstrated specificity of N-ethylmaleimide for oxidase activation and lack of effect on turnover of the NADPH oxidase suggested that sustained O2- generation by intact neutrophils was a result of continued replenishment of a small pool of active oxidase. The existence of an inactive pool of NADPH oxidase molecules in particulate preparations from stimulated neutrophils was supported more directly by activating these preparations again in the cell-free system.

  8. Narboh D, a Respiratory Burst Oxidase Homolog in Nicotiana attenuata, is Required for Late Defense Responses After Herbivore Attack

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    Jinsong Wu; Lei Wang; Hendrik Wünsche; Ian T.Baldwin

    2013-01-01

    The superoxide (O2-)-generating NADPH oxidases are crucial for the defense of plants against attack from pathogens; however,it remains unknown whether they also mediate responses against chewing insect herbivores.The transcripts of the respiratory burst NADPH oxidase homolog Narboh D in Nicotiana attenuate are rapidly and transiently elicited by wounding,and are amplified when Manduca sexta oral secretions (OS) are added to the wounds.The fatty-acid-amino-acid-conjugates (FACs),demonstrably the major elicitors in M.sexta OS,are responsible for the increase in Narboh D transcripts.Silencing Narboh D significantly reduced reactive oxygen species (ROS) levels after OS elicitation,but neither OS-elicited jasmonic acid (JA) or JA-isoleucine (JA-Ile) bursts,pivotal hormones that regulates plant resistance to herbivores,nor early transcripts of herbivore defense-related genes (NaJAR4 and NaPAL1),were influenced.However,late OS-elicited increases in trypsin proteinase inhibitors (TPIs),as well as the transcript levels of defense genes such as polyphenol oxidase,TPI and Thionin were significantly reduced.In addition,Narboh D-silenced plants were more vulnerable to insect herbivores,especially the larvae of the generalist Spodoptera littoralis.We thus conclude that Narboh D-based defenses play an important role in late herbivore-elicited responses.

  9. A proposed interplay between peroxidase, amine oxidase and lipoxygenase in the wounding-induced oxidative burst in Pisum sativum seedlings.

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    Roach, Thomas; Colville, Louise; Beckett, Richard P; Minibayeva, Farida V; Havaux, Michel; Kranner, Ilse

    2015-04-01

    Plant surfaces form the barrier between a plant and its environment. Upon damage, the wound healing process begins immediately and is accompanied by a rapid production of extracellular reactive oxygen species (ROS), essential in deterring pathogens, signalling responses and cell wall restructuring. Although many enzymes produce extracellular ROS, it is unclear if ROS-producing enzymes act synergistically. We characterised the oxidative burst of superoxide (O2(·-)) and hydrogen peroxide (H2O2) that follows wounding in pea (Pisum sativum L.) seedlings. Rates of ROS production were manipulated by exogenous application of enzyme substrates and inhibitors. The results indicate significant roles for di-amine oxidases (DAO) and peroxidases (Prx) rather than NADPH oxidase. The burst of O2(·-) was strongly dependent on the presence of H2O2 produced by DAO. Potential substrates released from wounded seedlings included linoleic acid that, upon exogenous application, strongly stimulated catalase-sensitive O2(·-) production. Moreover, a 65kD plasma membrane (PM) guaiacol Prx was found in the secretome of wounded seedlings and showed dependence on linoleic acid for O2(·-) production. Lipoxygenases are suggested to modulate O2(·-) production by consuming polyunsaturated fatty acids in the apoplast. Overall, a O2(·-)-producing mechanism involving H2O2-derived from DAO, linoleic acid and a PM-associated Prx is proposed. Copyright © 2014 Elsevier Ltd. All rights reserved.

  10. Pyridox(am)ine-5-Phosphate Oxidase Deficiency Treatable Cause of Neonatal Epileptic Encephalopathy With Burst Suppression: Case Report and Review of the Literature.

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    Guerin, Andrea; Aziz, Aly S; Mutch, Carly; Lewis, Jillian; Go, Cristina Y; Mercimek-Mahmutoglu, Saadet

    2015-08-01

    Pyridox(am)ine-5-phosphate oxidase deficiency is an autosomal recessive disorder of pyridoxine metabolism. Intractable neonatal epileptic encephalopathy is the classical presentation. Pyridoxal-5-phosphate or pyridoxine supplementation improves symptoms. We report a patient with myoclonic and tonic seizures at the age of 1 hour. Pyridoxal-5-phosphate was started on the first day of life and seizures stopped at the age of 3 days, but encephalopathy persisted for 4 weeks. She had normal neurodevelopmental outcome at the age of 12 months on pyridoxal-5-phosphate monotherapy. She had novel homozygous pathogenic frameshift mutation (c.448_451del;p.Pro150Argfs*27) in the PNPO gene. Long-lasting encephalopathy despite well-controlled clinical seizures does neither confirm nor exclude pyridox(am)ine-5-phosphate oxidase deficiency. Normal neurodevelopmental outcome of our patient emphasizes the importance of pyridoxal-5-phosphate treatment. Pyridox(am)ine-5-phosphate oxidase deficiency should be included in the differential diagnosis of Ohtahara syndrome and neonatal myoclonic encephalopathy as a treatable underlying cause. In addition, we reviewed the literature for pyridox(am)ine-5-phosphate oxidase deficiency and summarized herein all confirmed cases.

  11. Pepsin homologues in bacteria

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    Bateman Alex

    2009-09-01

    Full Text Available Abstract Background Peptidase family A1, to which pepsin belongs, had been assumed to be restricted to eukaryotes. The tertiary structure of pepsin shows two lobes with similar folds and it has been suggested that the gene has arisen from an ancient duplication and fusion event. The only sequence similarity between the lobes is restricted to the motif around the active site aspartate and a hydrophobic-hydrophobic-Gly motif. Together, these contribute to an essential structural feature known as a psi-loop. There is one such psi-loop in each lobe, and so each lobe presents an active Asp. The human immunodeficiency virus peptidase, retropepsin, from peptidase family A2 also has a similar fold but consists of one lobe only and has to dimerize to be active. All known members of family A1 show the bilobed structure, but it is unclear if the ancestor of family A1 was similar to an A2 peptidase, or if the ancestral retropepsin was derived from a half-pepsin gene. The presence of a pepsin homologue in a prokaryote might give insights into the evolution of the pepsin family. Results Homologues of the aspartic peptidase pepsin have been found in the completed genomic sequences from seven species of bacteria. The bacterial homologues, unlike those from eukaryotes, do not possess signal peptides, and would therefore be intracellular acting at neutral pH. The bacterial homologues have Thr218 replaced by Asp, a change which in renin has been shown to confer activity at neutral pH. No pepsin homologues could be detected in any archaean genome. Conclusion The peptidase family A1 is found in some species of bacteria as well as eukaryotes. The bacterial homologues fall into two groups, one from oceanic bacteria and one from plant symbionts. The bacterial homologues are all predicted to be intracellular proteins, unlike the eukaryotic enzymes. The bacterial homologues are bilobed like pepsin, implying that if no horizontal gene transfer has occurred the duplication

  12. Legume NADPH Oxidases Have Crucial Roles at Different Stages of Nodulation

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    Jesús Montiel

    2016-05-01

    Full Text Available Plant NADPH oxidases, formerly known as respiratory burst oxidase homologues (RBOHs, are plasma membrane enzymes dedicated to reactive oxygen species (ROS production. These oxidases are implicated in a wide variety of processes, ranging from tissue and organ growth and development to signaling pathways in response to abiotic and biotic stimuli. Research on the roles of RBOHs in the plant’s response to biotic stresses has mainly focused on plant-pathogen interactions; nonetheless, recent findings have shown that these oxidases are also involved in the legume-rhizobia symbiosis. The legume-rhizobia symbiosis leads to the formation of the root nodule, where rhizobia reduce atmospheric nitrogen to ammonia. A complex signaling and developmental pathway in the legume root hair and root facilitate rhizobial entrance and nodule organogenesis, respectively. Interestingly, several reports demonstrate that RBOH-mediated ROS production displays versatile roles at different stages of nodulation. The evidence collected to date indicates that ROS act as signaling molecules that regulate rhizobial invasion and also function in nodule senescence. This review summarizes discoveries that support the key and versatile roles of various RBOH members in the legume-rhizobia symbiosis.

  13. Legume NADPH Oxidases Have Crucial Roles at Different Stages of Nodulation

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    Montiel, Jesús; Arthikala, Manoj-Kumar; Cárdenas, Luis; Quinto, Carmen

    2016-01-01

    Plant NADPH oxidases, formerly known as respiratory burst oxidase homologues (RBOHs), are plasma membrane enzymes dedicated to reactive oxygen species (ROS) production. These oxidases are implicated in a wide variety of processes, ranging from tissue and organ growth and development to signaling pathways in response to abiotic and biotic stimuli. Research on the roles of RBOHs in the plant’s response to biotic stresses has mainly focused on plant-pathogen interactions; nonetheless, recent findings have shown that these oxidases are also involved in the legume-rhizobia symbiosis. The legume-rhizobia symbiosis leads to the formation of the root nodule, where rhizobia reduce atmospheric nitrogen to ammonia. A complex signaling and developmental pathway in the legume root hair and root facilitate rhizobial entrance and nodule organogenesis, respectively. Interestingly, several reports demonstrate that RBOH-mediated ROS production displays versatile roles at different stages of nodulation. The evidence collected to date indicates that ROS act as signaling molecules that regulate rhizobial invasion and also function in nodule senescence. This review summarizes discoveries that support the key and versatile roles of various RBOH members in the legume-rhizobia symbiosis. PMID:27213330

  14. Legume NADPH Oxidases Have Crucial Roles at Different Stages of Nodulation.

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    Montiel, Jesús; Arthikala, Manoj-Kumar; Cárdenas, Luis; Quinto, Carmen

    2016-05-18

    Plant NADPH oxidases, formerly known as respiratory burst oxidase homologues (RBOHs), are plasma membrane enzymes dedicated to reactive oxygen species (ROS) production. These oxidases are implicated in a wide variety of processes, ranging from tissue and organ growth and development to signaling pathways in response to abiotic and biotic stimuli. Research on the roles of RBOHs in the plant's response to biotic stresses has mainly focused on plant-pathogen interactions; nonetheless, recent findings have shown that these oxidases are also involved in the legume-rhizobia symbiosis. The legume-rhizobia symbiosis leads to the formation of the root nodule, where rhizobia reduce atmospheric nitrogen to ammonia. A complex signaling and developmental pathway in the legume root hair and root facilitate rhizobial entrance and nodule organogenesis, respectively. Interestingly, several reports demonstrate that RBOH-mediated ROS production displays versatile roles at different stages of nodulation. The evidence collected to date indicates that ROS act as signaling molecules that regulate rhizobial invasion and also function in nodule senescence. This review summarizes discoveries that support the key and versatile roles of various RBOH members in the legume-rhizobia symbiosis.

  15. Expression of alternative oxidase in tomato

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    Kakefuda, M.; McIntosh, L. (Michigan State Univ., East Lansing (USA))

    1990-05-01

    Tomato fruit ripening is characterized by an increase in ethylene biosynthesis, a burst in respiration (i.e. the climacteric), fruit softening and pigmentation. As whole tomatoes ripened from mature green to red, there was an increase in the alternative oxidase capacity. Aging pink tomato slices for 24 and 48 hrs also showed an increase of alternative oxidase and cytochrome oxidase capacities. Monoclonal antibodies prepared to the Sauromatum guttatum alternative oxidase were used to follow the appearance of alternative oxidase in tomato fruits. There is a corresponding increase in a 36kDa protein with an increase in alternative oxidase capacity. Effects of ethylene and norbornadiene on alternative oxidase capacity were also studied. We are using an alternative oxidase cDNA clone from potato to study the expression of mRNA in ripening and wounded tomatoes to determine if the gene is transcriptionally regulated.

  16. NDS27 combines the effect of curcumin lysinate and hydroxypropyl-β-cyclodextrin to inhibit equine PKCδ and NADPH oxidase involved in the oxidative burst of neutrophils

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    Sandrine Derochette

    2014-01-01

    Full Text Available Polymorphonuclear neutrophils (PMNs are involved in host defence against infections by the production of reactive oxygen species (ROS, but excessive PMN stimulation is associated with the development of inflammatory diseases. After appropriate stimuli, protein kinase C (PKC triggers the assembly of NADPH oxidase (Nox2 which produces superoxide anion (O2¯−, from which ROS derive. The therapeutic use of polyphenols is proposed to lower ROS production by limiting Nox2 and PKC activities. The purpose of this study was to compare the antioxidant effect of NDS27 and NDS28, two water-soluble forms of curcumin lysinate respectively complexed with hydroxypropyl-β-cyclodextrin (HPβCD and γ-cyclodextrin (γ-CD, on the activity of Nox2 and PKCδ, involved in the Nox2 activation pathway. Our results, showed that NDS27 is the best inhibitor for Nox2 and PKCδ. This was illustrated by the combined effect of HPβCD and curcumin lysinate: HPβCD, but not γ-CD, improved the release of curcumin lysinate and its exchange against lipid or cholesterol as demonstrated by the lipid colouration with Oil Red O, the extraction of radical lipophilic probes recorded by ESR and the HPLC measurements of curcumin. HPβCD not only solubilised and transported curcumin, but also indirectly enhanced its action on both PKC and Nox2 activities. The modulatory effect of NDS27 on the Nox2 activation pathway of neutrophils may open therapeutic perspectives for the control of pathologies with excessive inflammatory reactions.

  17. Magnetar Bursts

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    Kouveliotou, Chryssa

    2014-01-01

    The Fermi/Gamma-ray Burst Monitor (GBM) was launched in June 2008. During the last five years the instrument has observed several hundreds of bursts from 8 confirmed magnetars and 19 events from unconfirmed sources. I will discuss the results of the GBM magnetar burst catalog, expand on the different properties of their diverse source population, and compare these results with the bursting activity of past sources. I will then conclude with thoughts of how these properties fit the magnetar theoretical models.

  18. The pathogenic development of Sclerotinia sclerotiorum in soybean requires specific host NADPH oxidases.

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    Ranjan, Ashish; Jayaraman, Dhileepkumar; Grau, Craig; Hill, John H; Whitham, Steven A; Ané, Jean-Michel; Smith, Damon L; Kabbage, Mehdi

    2017-04-05

    The plant membrane-localized NADPH oxidases, also known as respiratory burst oxidase homologues (RBOHs), play crucial roles in various cellular activities, including plant disease responses, and are a major source of reactive oxygen species (ROS). Sclerotinia sclerotiorum is a cosmopolitan fungal pathogen that causes Sclerotinia stem rot (SSR) in soybean. Via a key virulence factor, oxalic acid, it induces programmed cell death (PCD) in the host plant, a process that is reliant on ROS generation. In this study, using protein sequence similarity searches, we identified 17 soybean RBOHs (GmRBOHs) and studied their contribution to SSR disease development, drought tolerance and nodulation. We clustered the soybean RBOH genes into six groups of orthologues based on phylogenetic analysis with their Arabidopsis counterparts. Transcript analysis of all 17 GmRBOHs revealed that, of the six identified groups, group VI (GmRBOH-VI) was specifically and drastically induced following S. sclerotiorum challenge. Virus-induced gene silencing (VIGS) of GmRBOH-VI using Bean pod mottle virus (BPMV) resulted in enhanced resistance to S. sclerotiorum and markedly reduced ROS levels during disease development. Coincidently, GmRBOH-VI-silenced plants were also found to be drought tolerant, but showed a reduced capacity to form nodules. Our results indicate that the pathogenic development of S. sclerotiorum in soybean requires the active participation of specific host RBOHs, to induce ROS and cell death, thus leading to the establishment of disease. © 2017 BSPP AND JOHN WILEY & SONS LTD.

  19. Tomato SlRbohB, a member of the NADPH oxidase family, is required for disease resistance against Botrytis cinerea and tolerance to drought stress

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    Xiaohui eLi

    2015-06-01

    Full Text Available NADPH oxidases (also known as respiratory burst oxidase homologues, Rbohs are the enzymes that catalyze the generation of reactive oxygen species (ROS in plants. In the present study, eight SlRboh genes were identified in tomato and their possible involvement in resistance to Botrytis cinerea and drought tolerance was examined. Expression of SlRbohs was induced by B. cinerea and Pseudomonas syringae pv. tomato but displayed distinct patterns. Virus-induced gene silencing (VIGS-based silencing of SlRbohB resulted in reduced resistance to B. cinerea but silencing of each of other SlRbohs did not affect the resistance. The SlRbohB-silenced plants accumulated more ROS and attenuated expression of defense genes after infection of B. cinerea than the nonsilenced plants. Silencing of SlRbohB also suppressed flg22-induced ROS burst and the expression of SlLrr22, a marker gene related to PAMP-triggered immunity (PTI. Transient expression of SlRbohB in Nicotiana benthamiana led to enhanced resistance to B. cinerea. Furthermore, silencing of SlRbohB resulted in decreased drought tolerance, accelerated water loss in leaves and altered expression of drought-responsive genes. Our data demonstrate that SlRbohB positively regulates the resistance to B. cinerea, flg22-induced PTI and drought tolerance in tomato.

  20. Structure-function characterization reveals new catalytic diversity in the galactose oxidase and glyoxal oxidase family.

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    Yin, DeLu Tyler; Urresti, Saioa; Lafond, Mickael; Johnston, Esther M; Derikvand, Fatemeh; Ciano, Luisa; Berrin, Jean-Guy; Henrissat, Bernard; Walton, Paul H; Davies, Gideon J; Brumer, Harry

    2015-12-18

    Alcohol oxidases, including carbohydrate oxidases, have a long history of research that has generated fundamental biological understanding and biotechnological applications. Despite a long history of study, the galactose 6-oxidase/glyoxal oxidase family of mononuclear copper-radical oxidases, Auxiliary Activity Family 5 (AA5), is currently represented by only very few characterized members. Here we report the recombinant production and detailed structure-function analyses of two homologues from the phytopathogenic fungi Colletotrichum graminicola and C. gloeosporioides, CgrAlcOx and CglAlcOx, respectively, to explore the wider biocatalytic potential in AA5. EPR spectroscopy and crystallographic analysis confirm a common active-site structure vis-à-vis the archetypal galactose 6-oxidase from Fusarium graminearum. Strikingly, however, CgrAlcOx and CglAlcOx are essentially incapable of oxidizing galactose and galactosides, but instead efficiently catalyse the oxidation of diverse aliphatic alcohols. The results highlight the significant potential of prospecting the evolutionary diversity of AA5 to reveal novel enzyme specificities, thereby informing both biology and applications.

  1. Crystal chemistry of sartorite homologues and related sulfosalts

    DEFF Research Database (Denmark)

    Berlepsch, Peter; Makovicky, Emil; Balic-Zunic, Tonci

    2001-01-01

    sartorite homologues, sulfosalt, crystal chemistry, coordination polyhedra, bond-pairs, crankshaft chains......sartorite homologues, sulfosalt, crystal chemistry, coordination polyhedra, bond-pairs, crankshaft chains...

  2. The contributions of protein disulfide isomerase and its homologues to oxidative protein folding in the yeast endoplasmic reticulum

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    Xiao, Ruoyu; Wilkinson, Bonney; Solovyov, Anton

    2004-01-01

    In vitro, protein disulfide isomerase (Pdi1p) introduces disulfides into proteins (oxidase activity) and provides quality control by catalyzing the rearrangement of incorrect disulfides (isomerase activity). Protein disulfide isomerase (PDI) is an essential protein in Saccharomyces cerevisiae......, but the contributions of the catalytic activities of PDI to oxidative protein folding in the endoplasmic reticulum (ER) are unclear. Using variants of Pdi1p with impaired oxidase or isomerase activity, we show that isomerase-deficient mutants of PDI support wild-type growth even in a strain in which all of the PDI...... homologues of the yeast ER have been deleted. Although the oxidase activity of PDI is sufficient for wild-type growth, pulse-chase experiments monitoring the maturation of carboxypeptidase Y reveal that oxidative folding is greatly compromised in mutants that are defective in isomerase activity. Pdi1p...

  3. NADPH Oxidases in Chronic Liver Diseases

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    Joy X. Jiang

    2014-01-01

    Full Text Available Oxidative stress is a common feature observed in a wide spectrum of chronic liver diseases including viral hepatitis, alcoholic, and nonalcoholic steatohepatitis. The nicotinamide adenine dinucleotide phosphate (NADPH oxidases (NOXs are emerging as major sources of reactive oxygen species (ROS. Several major isoforms are expressed in the liver, including NOX1, NOX2, and NOX4. While the phagocytic NOX2 has been known to play an important role in Kupffer cell and neutrophil phagocytic activity and inflammation, the nonphagocytic NOX homologues are increasingly recognized as key enzymes in oxidative injury and wound healing. In this review, we will summarize the current advances in knowledge on the regulatory pathways of NOX activation, their cellular distribution, and their role in the modulation of redox signaling in liver diseases.

  4. Crystal chemical formula for sartorite homologues

    DEFF Research Database (Denmark)

    Makovicky, Emil; Topa, Dan

    2015-01-01

    The members of the sartorite homologous series are complex sulfides Me 2+ 8N–16–2X Me 3+ 16+X Me + XS8N+8where Me 2+ is Pb and Me 3+ is As and Sb, whereas Me + is Ag and/or Tl. This paper presents calculation formulae for the homologue order N and for the separate substitution percentages for Tl ...... + (As,Sb) ↔ 2Pb and Ag + (As,Sb) ↔ 2Pb substitutions. This enables one to evaluate the crystal chemistry and build a systematic classification of the sartorite homologues...

  5. Burst Mechanisms in Hydrodynamics

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    Knobloch, E

    1999-01-01

    Different mechanisms believed to be responsible for the generation of bursts in hydrodynamical systems are reviewed and a new mechanism capable of generating regular or irregular bursts of large dynamic range near threshold is described. The new mechanism is present in the interaction between oscillatory modes of odd and even parity in systems of large but finite aspect ratio, and provides an explanation for the bursting behavior observed in binary fluid convection. Additional applications of the new mechanism are proposed.

  6. Propeller tone bursts

    Science.gov (United States)

    Succi, G. P.; Munro, D. H.; Ingard, K. U.

    1983-01-01

    Intense high frequency (25-38 kHz) tone bursts have been observed in acoustic tests of a scale model of a general aviation propeller. The amplitude of the tone burst is approximately equal to the amplitude of the propeller noise signature. The conditions necessary for the production of these tone bursts are described. The experiments indicate that the origin of these bursts is a periodic flow oscillation on the suction surface of the propeller blade tips which may be due to the interaction between an oscillating shock wave and a laminar boundary layer.

  7. The Drift Burst Hypothesis

    DEFF Research Database (Denmark)

    Christensen, Kim; Oomen, Roel; Renò, Roberto

    The Drift Burst Hypothesis postulates the existence of short-lived locally explosive trends in the price paths of financial assets. The recent US equity and Treasury flash crashes can be viewed as two high profile manifestations of such dynamics, but we argue that drift bursts of varying magnitude......, currencies and commodities. We find that the majority of identified drift bursts are accompanied by strong price reversals and these can therefore be regarded as “flash crashes” that span brief periods of severe market disruption without any material longer term price impacts....

  8. Fast Radio Bursts

    Indian Academy of Sciences (India)

    Akshaya Rane; Duncan Lorimer

    2017-09-01

    We summarize our current state of knowledge of fast radio bursts (FRBs) which were first discovered a decade ago. Following an introduction to radio transients in general, including pulsars and rotating radio transients, we discuss the discovery of FRBs. We then discuss FRB follow-up observations in the context of repeat bursts before moving on to review propagation effects on FRB signals, FRB progenitor models and an outlook on FRBs as potential cosmological tools.

  9. Induction of reactive oxygen species and the potential role of NADPH oxidase in hyperhydricity of garlic plantlets in vitro.

    Science.gov (United States)

    Tian, Jie; Cheng, Yaqi; Kong, Xiangyu; Liu, Min; Jiang, Fangling; Wu, Zhen

    2017-01-01

    Hyperhydricity is a physiological disorder associated with oxidative stress. Reactive oxygen species (ROS) generation in plants is initiated by various enzymatic sources, including plasma membrane-localized nicotinamide adenine dinucleotide phosphate (NADPH) oxidases, cell wall-bound peroxidase (POD), and apoplastic polyamine oxidase (PAO). The origin of the oxidative burst associated with hyperhydricity remains unknown. To investigate the role of NADPH oxidases, POD, and PAO in ROS production and hyperhydricity, exogenous hydrogen peroxide (H2O2) and inhibitors of each ROS-producing enzyme were applied to explore the mechanism of oxidative stress induction in garlic plantlets in vitro. A concentration of 1.5 mM H2O2 increased endogenous ROS production and hyperhydricity occurrence and enhanced the activities of NADPH oxidases, POD, and PAO. During the entire treatment period, NADPH oxidase activity increased continuously, whereas POD and PAO activities exhibited a transient increase and subsequently declined. Histochemical and cytochemical visualization demonstrated that specific inhibitors of each enzyme effectively suppressed ROS accumulation. Moreover, superoxide anion generation, H2O2 content, and hyperhydric shoot frequency in H2O2-stressed plantlets decreased significantly. The NADPH oxidase inhibitor was the most effective at suppressing superoxide anion production. The results suggested that NADPH oxidases, POD, and PAO were responsible for endogenous ROS induction. NADPH oxidase activation might play a pivotal role in the oxidative burst in garlic plantlets in vitro during hyperhydricity.

  10. Isolated sulfite oxidase deficiency.

    Science.gov (United States)

    Relinque, B; Bardallo, L; Granero, M; Jiménez, P J; Luna, S

    2015-03-10

    Sulfite oxidase deficiency is an uncommon metabolic disease. Only few cases of its isolated form have been reported in the literature. We report a case of severe neonatal onset. A newborn baby of 41 weeks gestational age, weighted at birth of 3240 grams and had an Apgar score of 6-10-10. Fifty-three hours after being born, the baby started with seizures that were refractory to antiepileptic treatment. Brain function was monitored using a-EEG. Laboratory and imaging tests were performed. All of them were consistent with sulfite oxidase deficiency. The diagnosis was confirmed by genetic testing. We highlight the importance of this disease as part of the differential diagnosis of seizures during the neonatal period, as well as the importance of the therapeutic support based on dietary restrictions. It's also remarkable the possibility of prenatal diagnosis by quantifying enzyme activity and it's also possible carrying out DNA mutational analysis.

  11. Interplanetary Type IV Bursts

    CERN Document Server

    Hillaris, Alexander; Nindos, Alexander

    2016-01-01

    In this work we study the characteristics of moving type IV radio bursts which extend to the hectometric wavelengths (interplanetary type IV or type IV IP bursts) and their relationship with energetic phenomena on the Sun. Our dataset comprised 48 Interplanetary type IV bursts observed by the Wind/WAVES in the 13.825 MHz?20 KHz frequency range. The dynamic spec tra of the RSTN, DAM, ARTEMIS-IV, CULGOORA, Hiraiso and IZMIRAN Radio-spectrographs were used to track the evolution of the events in the low corona; these were supplemented with SXR ?ux recordings from GOES and CME data from LASCO. Positional information for the coronal bursts were obtained by the Nan\\c{c}ay radioheliograph (NRH). We examined the relationship of the type IV events with coronal radio bursts, CMEs and SXR ?ares. The majority of the events (45) were characterized as compact; their duration was on average 106 min. This type of events were, mostly, associated with M and X class ?ares (40 out of 45) and fast CMEs; 32 of these events had CME...

  12. NADPH Oxidase as a Therapeutic Target for Neuroprotection against Ischaemic Stroke: Future Perspectives

    Directory of Open Access Journals (Sweden)

    Carli L. Roulston

    2013-04-01

    Full Text Available Oxidative stress caused by an excess of reactive oxygen species (ROS is known to contribute to stroke injury, particularly during reperfusion, and antioxidants targeting this process have resulted in improved outcomes experimentally. Unfortunately these improvements have not been successfully translated to the clinical setting. Targeting the source of oxidative stress may provide a superior therapeutic approach. The NADPH oxidases are a family of enzymes dedicated solely to ROS production and pre-clinical animal studies targeting NADPH oxidases have shown promising results. However there are multiple factors that need to be considered for future drug development: There are several homologues of the catalytic subunit of NADPH oxidase. All have differing physiological roles and may contribute differentially to oxidative damage after stroke. Additionally, the role of ROS in brain repair is largely unexplored, which should be taken into consideration when developing drugs that inhibit specific NADPH oxidases after injury. This article focuses on the current knowledge regarding NADPH oxidase after stroke including in vivo genetic and inhibitor studies. The caution required when interpreting reports of positive outcomes after NADPH oxidase inhibition is also discussed, as effects on long term recovery are yet to be investigated and are likely to affect successful clinical translation.

  13. Characterization of the C. elegans erlin homologue

    Directory of Open Access Journals (Sweden)

    Hoegg Maja B

    2012-01-01

    Full Text Available Abstract Background Erlins are highly conserved proteins associated with lipid rafts within the endoplasmic reticulum (ER. Biochemical studies in mammalian cell lines have shown that erlins are required for ER associated protein degradation (ERAD of activated inositol-1,4,5-trisphosphate receptors (IP3Rs, implying that erlin proteins might negatively regulate IP3R signalling. In humans, loss of erlin function appears to cause progressive intellectual disability, motor dysfunction and joint contractures. However, it is unknown if defects in IP3R ERAD are the underlying cause of this disease phenotype, whether ERAD of activated IP3Rs is the only function of erlin proteins, and what role ERAD plays in regulating IP3R-dependent processes in the context of an intact animal or embryo. In this study, we characterize the erlin homologue of the nematode Caenorhabditis elegans and examine erlin function in vivo. We specifically set out to test whether C. elegans erlin modulates IP3R-dependent processes, such as egg laying, embryonic development and defecation rates. We also explore the possibility that erlin might play a more general role in the ERAD pathway of C. elegans. Results We first show that the C. elegans erlin homologue, ERL-1, is highly similar to mammalian erlins with respect to amino acid sequence, domain structure, biochemical properties and subcellular location. ERL-1 is present throughout the C. elegans embryo; in adult worms, ERL-1 appears restricted to the germline. The expression pattern of ERL-1 thus only partially overlaps with that of ITR-1, eliminating the possibility of ERL-1 being a ubiquitous and necessary regulator of ITR-1. We show that loss of ERL-1 does not affect overall phenotype, or alter brood size, embryonic development or defecation cycle length in either wild type or sensitized itr-1 mutant animals. Moreover we show that ERL-1 deficient worms respond normally to ER stress conditions, suggesting that ERL-1 is not an

  14. A Burst to See

    Science.gov (United States)

    2008-04-01

    On 19 March, Nature was particularly generous and provided astronomers with the wealth of four gamma-ray bursts on the same day. But that was not all: one of them is the most luminous object ever observed in the Universe. Despite being located in a distant galaxy, billions of light years away, it was so bright that it could have been seen, for a brief while, with the unaided eye. ESO PR Photo 08a/08 ESO PR Photo 08a/08 The REM Telescope and TORTORA Camera Gamma-ray bursts (GRBs) are short flashes of energetic gamma-rays lasting from less than a second to several minutes. They release a tremendous quantity of energy in this short time making them the most powerful events since the Big Bang. It is now widely accepted that the majority of the gamma-ray bursts signal the explosion of very massive, highly evolved stars that collapse into black holes. Gamma-ray bursts, which are invisible to our eyes, are discovered by telescopes in space. After releasing their intense burst of high-energy radiation, they become detectable for a short while in the optical and in the near-infrared. This 'afterglow' fades very rapidly, making detailed analysis possible for only a few hours after the gamma-ray detection. This analysis is important in particular in order to determine the GRB's distance and, hence, intrinsic brightness. The gamma-ray burst GRB 080319B was detected by the NASA/STFC/ASI Swift satellite. "It was so bright that it almost blinded the Swift instruments for a while," says Guido Chincarini, Italian principal investigator of the mission. A bright optical counterpart was soon identified in the Boötes Constellation (the "Bear Driver" or "Herdsman"). A host of ground-based telescopes reacted promptly to study this new object in the sky. In particular, the optical emission was detected by a few wide-field cameras on telescopes that constantly monitor a large fraction of the sky, including the TORTORA camera in symbiosis with the 0.6-m REM telescope located at La Silla

  15. The Glast Burst Monitor

    Science.gov (United States)

    Meegan, Charles

    2000-01-01

    The Gamma-Ray Large Area Space Telescope (GLAST) will include a secondary instrument to augment the observatory's capabilities for GRB studies. The GLAST Burst Monitor (GBK is a collaboration between Marshall Space Flight Center, the University of Huntsville, Alabama, and the Max Plank Institute for Extraterrestrial Physics. The purpose of the GBM is to extend energy coverage below the main instrument's lower limit of about 20 MeV, and to provide an on-board burst trigger and approximate location. The instrument consists of twelve NaI detectors and two BGO detectors. This combination provides energy coverage from a few keV up to about 30 MeV.

  16. Interplanetary Type IV Bursts

    Science.gov (United States)

    Hillaris, A.; Bouratzis, C.; Nindos, A.

    2016-08-01

    We study the characteristics of moving type IV radio bursts that extend to hectometric wavelengths (interplanetary type IV or type {IV}_{{IP}} bursts) and their relationship with energetic phenomena on the Sun. Our dataset comprises 48 interplanetary type IV bursts observed with the Radio and Plasma Wave Investigation (WAVES) instrument onboard Wind in the 13.825 MHz - 20 kHz frequency range. The dynamic spectra of the Radio Solar Telescope Network (RSTN), the Nançay Decametric Array (DAM), the Appareil de Routine pour le Traitement et l' Enregistrement Magnetique de l' Information Spectral (ARTEMIS-IV), the Culgoora, Hiraso, and the Institute of Terrestrial Magnetism, Ionosphere and Radio Wave Propagation (IZMIRAN) Radio Spectrographs were used to track the evolution of the events in the low corona. These were supplemented with soft X-ray (SXR) flux-measurements from the Geostationary Operational Environmental Satellite (GOES) and coronal mass ejections (CME) data from the Large Angle and Spectroscopic Coronagraph (LASCO) onboard the Solar and Heliospheric Observatory (SOHO). Positional information of the coronal bursts was obtained by the Nançay Radioheliograph (NRH). We examined the relationship of the type IV events with coronal radio bursts, CMEs, and SXR flares. The majority of the events (45) were characterized as compact, their duration was on average 106 minutes. This type of events was, mostly, associated with M- and X-class flares (40 out of 45) and fast CMEs, 32 of these events had CMEs faster than 1000 km s^{-1}. Furthermore, in 43 compact events the CME was possibly subjected to reduced aerodynamic drag as it was propagating in the wake of a previous CME. A minority (three) of long-lived type {IV}_{{IP}} bursts was detected, with durations from 960 minutes to 115 hours. These events are referred to as extended or long duration and appear to replenish their energetic electron content, possibly from electrons escaping from the corresponding coronal

  17. Is the Prosthetic Homologue Necessary for Embodiment?

    Science.gov (United States)

    Dornfeld, Chelsea; Swanston, Michelle; Cassella, Joseph; Beasley, Casey; Green, Jacob; Moshayev, Yonatan; Wininger, Michael

    2016-01-01

    Embodiment is the process by which patients with limb loss come to accept their peripheral device as a natural extension of self. However, there is little guidance as to how exacting the prosthesis must be in order for embodiment to take place: is it necessary for the prosthetic hand to look just like the absent hand? Here, we describe a protocol for testing whether an individual would select a hand that looks like their own from among a selection of five hands, and whether the hand selection (regardless of homology) is consistent across multiple exposures to the same (but reordered) set of candidate hands. Pilot results using healthy volunteers reveals that hand selection is only modestly consistent, and that selection of the prosthetic homologue is atypical (61 of 192 total exposures). Our protocol can be executed in minutes, and makes use of readily available equipment and softwares. We present both a face-to-face and a virtual protocol, for maximum flexibility of implementation. PMID:28066228

  18. Is the prosthetic homologue necessary for embodiment?

    Directory of Open Access Journals (Sweden)

    Chelsea Dornfeld

    2016-12-01

    Full Text Available Embodiment is the process by which patients with limb loss come to accept their peripheral device as a natural extension of self. However, there is little guidance as to how exacting the prosthesis must be in order for embodiment to take place: is it necessary for the prosthetic hand to look just like the absent hand? Here, we describe a protocol for testing whether an individual would select a hand that looks like their own from among a selection of 5 hands, and whether the hand selection (regardless of homology is consistent across multiple exposures to the same (but reordered set of candidate hands. Pilot results using healthy volunteers reveals that hand selection is only modestly consistent, and that selection of the prosthetic homologue is atypical (61 of 192 total exposures. Our protocol can be executed in minutes, and makes use of readily available equipment and softwares. We present both a face-to-face and a virtual protocol, for maximum flexibility of implementation.

  19. The oxidative burst reaction in mammalian cells depends on gravity.

    Science.gov (United States)

    Adrian, Astrid; Schoppmann, Kathrin; Sromicki, Juri; Brungs, Sonja; von der Wiesche, Melanie; Hock, Bertold; Kolanus, Waldemar; Hemmersbach, Ruth; Ullrich, Oliver

    2013-12-20

    Gravity has been a constant force throughout the Earth's evolutionary history. Thus, one of the fundamental biological questions is if and how complex cellular and molecular functions of life on Earth require gravity. In this study, we investigated the influence of gravity on the oxidative burst reaction in macrophages, one of the key elements in innate immune response and cellular signaling. An important step is the production of superoxide by the NADPH oxidase, which is rapidly converted to H2O2 by spontaneous and enzymatic dismutation. The phagozytosis-mediated oxidative burst under altered gravity conditions was studied in NR8383 rat alveolar macrophages by means of a luminol assay. Ground-based experiments in "functional weightlessness" were performed using a 2 D clinostat combined with a photomultiplier (PMT clinostat). The same technical set-up was used during the 13th DLR and 51st ESA parabolic flight campaign. Furthermore, hypergravity conditions were provided by using the Multi-Sample Incubation Centrifuge (MuSIC) and the Short Arm Human Centrifuge (SAHC). The results demonstrate that release of reactive oxygen species (ROS) during the oxidative burst reaction depends greatly on gravity conditions. ROS release is 1.) reduced in microgravity, 2.) enhanced in hypergravity and 3.) responds rapidly and reversible to altered gravity within seconds. We substantiated the effect of altered gravity on oxidative burst reaction in two independent experimental systems, parabolic flights and 2D clinostat / centrifuge experiments. Furthermore, the results obtained in simulated microgravity (2D clinorotation experiments) were proven by experiments in real microgravity as in both cases a pronounced reduction in ROS was observed. Our experiments indicate that gravity-sensitive steps are located both in the initial activation pathways and in the final oxidative burst reaction itself, which could be explained by the role of cytoskeletal dynamics in the assembly and function

  20. Peroxisomal Polyamine Oxidase and NADPH-Oxidase cross-talk for ROS homeostasis which affects respiration rate in Arabidopsis thaliana

    Directory of Open Access Journals (Sweden)

    Efthimios A. Andronis

    2014-04-01

    Full Text Available Homeostasis of reactive oxygen species (ROS in the intracellular compartments is of critical importance as ROS have been linked with nearly all cellular processes and more importantly with diseases and aging. PAs are nitrogenous molecules with an evolutionary conserved role in the regulation of metabolic and energetic status of cells. Recent evidence also suggests that polyamines (PA are major regulators of ROS homeostasis. In Arabidopsis the backconversion of the PAs spermidine (Spd and spermine (Spm to putrescine (Put and Spd, respectively is catalyzed by two peroxisomal PA oxidases (AtPAO. However, the physiological role of this pathway remains largely elusive. Here we explore the role of peroxisomal PA backconversion and in particular that catalyzed by the highly expressed AtPAO3 in the regulation of ROS homeostasis and mitochondrial respiratory burst. Exogenous PAs exert an NADPH-oxidase dependent stimulation of oxygen consumption, with Spd exerting the strongest effect. This increase is attenuated by treatment with the NADPH-oxidase blocker diphenyleneiodonium iodide (DPI. Loss-of-function of AtPAO3 gene results to increased NADPH-oxidase-dependent production of superoxide anions (O2.-, but not H2O2, which activate the mitochondrial alternative oxidase pathway (AOX. On the contrary, overexpression of AtPAO3 results to an increased but balanced production of both H2O2 and O2.-. These results suggest that the ratio of O2.-/H2O2 regulates respiratory chain in mitochondria, with PA-dependent production of O2.- by NADPH-oxidase tilting the balance of electron transfer chain in favor of the AOX pathway. In addition, AtPAO3 seems to be an important component in the regulating module of ROS homeostasis, while a conserved role for PA backconversion and ROS across kingdoms is discussed.

  1. A Repeating Fast Radio Burst

    CERN Document Server

    Spitler, L G; Hessels, J W T; Bogdanov, S; Brazier, A; Camilo, F; Chatterjee, S; Cordes, J M; Crawford, F; Deneva, J; Ferdman, R D; Freire, P C C; Kaspi, V M; Lazarus, P; Lynch, R; Madsen, E C; McLaughlin, M A; Patel, C; Ransom, S M; Seymour, A; Stairs, I H; Stappers, B W; van Leeuwen, J; Zhu, W W

    2016-01-01

    Fast Radio Bursts are millisecond-duration astronomical radio pulses of unknown physical origin that appear to come from extragalactic distances. Previous follow-up observations have failed to find additional bursts at the same dispersion measures (i.e. integrated column density of free electrons between source and telescope) and sky position as the original detections. The apparent non-repeating nature of the fast radio bursts has led several authors to hypothesise that they originate in cataclysmic astrophysical events. Here we report the detection of ten additional bursts from the direction of FRB121102, using the 305-m Arecibo telescope. These new bursts have dispersion measures and sky positions consistent with the original burst. This unambiguously identifies FRB121102 as repeating and demonstrates that its source survives the energetic events that cause the bursts. Additionally, the bursts from FRB121102 show a wide range of spectral shapes that appear to be predominantly intrinsic to the source and wh...

  2. The Double Firing Burst

    Science.gov (United States)

    2008-09-01

    Astronomers from around the world combined data from ground- and space-based telescopes to paint a detailed portrait of the brightest explosion ever seen. The observations reveal that the jets of the gamma-ray burst called GRB 080319B were aimed almost directly at the Earth. Uncovering the disc ESO PR Photo 28/08 A Gamma-Ray Burst with Two Jets Read more on this illuminating blast in the additional story. GRB 080319B was so intense that, despite happening halfway across the Universe, it could have been seen briefly with the unaided eye (ESO 08/08). In a paper to appear in the 11 September issue of Nature, Judith Racusin of Penn State University, Pennsylvania (USA), and a team of 92 co-authors report observations across the electromagnetic spectrum that began 30 minutes before the explosion and followed it for months afterwards. "We conclude that the burst's extraordinary brightness arose from a jet that shot material almost directly towards Earth at almost the speed of light - the difference is only 1 part in 20 000," says Guido Chincarini, a member of the team. Gamma-ray bursts are the Universe's most luminous explosions. Most occur when massive stars run out of fuel. As a star collapses, it creates a black hole or neutron star that, through processes not fully understood, drives powerful gas jets outward. As the jets shoot into space, they strike gas previously shed by the star and heat it, thereby generating bright afterglows. The team believes the jet directed toward Earth contained an ultra-fast component just 0.4 degrees across (this is slightly smaller than the apparent size of the Full Moon). This jet is contained within another slightly less energetic jet about 20 times wider. The broad component is more typical of other bursts. "Perhaps every gamma-ray burst has a narrow jet, but astronomers miss it most of the time," says team member Stefano Covino. "We happened to view this monster down the barrel of the very narrow and energetic jet, and the chance for

  3. Lysyl oxidase in colorectal cancer.

    Science.gov (United States)

    Cox, Thomas R; Erler, Janine T

    2013-11-15

    Colorectal cancer is the third most prevalent form of cancer worldwide and fourth-leading cause of cancer-related mortality, leading to ~600,000 deaths annually, predominantly affecting the developed world. Lysyl oxidase is a secreted, extracellular matrix-modifying enzyme previously suggested to act as a tumor suppressor in colorectal cancer. However, emerging evidence has rapidly implicated lysyl oxidase in promoting metastasis of solid tumors and in particular colorectal cancer at multiple stages, affecting tumor cell proliferation, invasion, and angiogenesis. This emerging research has stimulated significant interest in lysyl oxidase as a strong candidate for developing and deploying inhibitors as functional efficacious cancer therapeutics. In this review, we discuss the rapidly expanding body of knowledge concerning lysyl oxidase in solid tumor progression, highlighting recent advancements in the field of colorectal cancer.

  4. Solar Partial N-burst

    Institute of Scientific and Technical Information of China (English)

    Zong-Jun Ning; Yu-Ying Liu; Qi-Jun Fu; Fu-Ying Xu

    2003-01-01

    We present a new sub-class of type III solar radio burst at the highfrequencies around 6.0 GHz. In addition to a descending and an ascending branchon the dynamic spectrum, it has an inverted morphology different from the simpletype U-burst. We call it "partial N-burst" because it is interpreted as the knownN-burst minus its first branch. The partial N-burst presented here was detectedamong a reverse slope type III (RS-III) burst group prior to the type V solar radiocontinuum and was simultaneously recorded by two spectrometers at the NationalAstronomical Observatories, Chinese Academy of Sciences (NAOC, 5.20-7.60 GHz)and at Purple Mountain Observatory (PMO, 4.50-7.50 GHz) on 1999 August 25.After the N-burst and M-burst, the partial N-burst is a third piece of evidence for amagnetic mirror effect in solar radio observation, when the same electron is reflectedat a pinched foot of a flare loop.

  5. Gamma-ray burst spectra

    Science.gov (United States)

    Teegarden, B. J.

    1982-01-01

    A review of recent results in gamma-ray burst spectroscopy is given. Particular attention is paid to the recent discovery of emission and absorption features in the burst spectra. These lines represent the strongest evidence to date that gamma-ray bursts originate on or near neutron stars. Line parameters give information on the temperature, magnetic field and possibly the gravitational potential of the neutron star. The behavior of the continuum spectrum is also discussed. A remarkably good fit to nearly all bursts is obtained with a thermal-bremsstrahlung-like continuum. Significant evolution is observed of both the continuum and line features within most events.

  6. Detection of a Yersinia pestis gene homologue in rodent samples

    Directory of Open Access Journals (Sweden)

    Timothy A. Giles

    2016-08-01

    Full Text Available A homologue to a widely used genetic marker, pla, for Yersinia pestis has been identified in tissue samples of two species of rat (Rattus rattus and Rattus norvegicus and of mice (Mus musculus and Apodemus sylvaticus using a microarray based platform to screen for zoonotic pathogens of interest. Samples were from urban locations in the UK (Liverpool and Canada (Vancouver. The results indicate the presence of an unknown bacterium that shares a homologue for the pla gene of Yersinia pestis, so caution should be taken when using this gene as a diagnostic marker.

  7. Proton stoichiometry associated with human neutrophil respiratory-burst reactions.

    Science.gov (United States)

    Gabig, T G; Lefker, B A; Ossanna, P J; Weiss, S J

    1984-11-10

    Control of the intraphagosomal pH in neutrophils may be of importance in creating a microbicidal environment by regulating the activity of the O2-.-generating NADPH oxidase and the lysosomal enzymes discharged into this compartment. In this study, we examined the proton stoichiometry associated with the primary enzymatic reaction underlying the respiratory burst. A preparation of the neutrophil-derived, membrane oxidase consumed NADPH and generated O2-. with a stoichiometry of 1 NADPH:2 O2-. When the enzymatically produced O2-. was prevented from undergoing dismutation, net protons were released in an approximate 1:2 stoichiometry with O2-. generated. In contrast, when O2-. was allowed to dismutate to H2O2, net protons were consumed in a 1:1 stoichiometry with the accumulated H2O2. Thus, the delta pH associated with the NADPH oxidase-dependent production of O2-. was dictated by the fate of the generated radical. The consumption of the oxidase-generated H2O2 by the lysosomal enzyme myeloperoxidase resulted in the formation of HOCl which was trapped in the presence of taurine as the N-chloro derivative. The ratio of chlorinated product formed to H+ consumed was 1:1. The implications of these results are discussed in terms of the known intraphagosomal pH changes that occur following neutrophil stimulation. We conclude that the O2-.-generating oxidase plays a dual role in the phagosome by simultaneously creating an oxidizing environment that optimizes pH-dependent microbicidal processes.

  8. Dark Gamma Ray Bursts

    CERN Document Server

    Brdar, Vedran; Liu, Jia

    2016-01-01

    Many theories of dark matter (DM) predict that DM particles can be captured by stars via scattering on ordinary matter. They subsequently condense into a DM core close to the center of the star and eventually annihilate. In this work, we trace DM capture and annihilation rates throughout the life of a massive star and show that this evolution culminates in an intense annihilation burst coincident with the death of the star in a core collapse supernova. The reason is that, along with the stellar interior, also its DM core heats up and contracts, so that the DM density increases rapidly during the final stages of stellar evolution. We argue that, counterintuitively, the annihilation burst is more intense if DM annihilation is a p-wave process than for s-wave annihilation because in the former case, more DM particles survive until the supernova. If among the DM annihilation products are particles like dark photons that can escape the exploding star and decay to Standard Model particles later, the annihilation bu...

  9. Short duration gamma ray bursts

    Indian Academy of Sciences (India)

    Patrick Das Gupta

    2004-10-01

    After a short review of gamma ray bursts (GRBs), we discuss the physical implications of strong statistical correlations seen among some of the parameters of short duration bursts (90 < 2 s). Finally, we conclude with a brief sketch of a new unified model for long and short GRBs.

  10. Isolation and characterization of an AGAMOUS homologue from cocoa

    NARCIS (Netherlands)

    Chaidamsari, T.; Sugiarit, H.; Santoso, D.; Angenent, G.C.; Maagd, de R.A.

    2006-01-01

    We report the cloning of a cDNA from TcAG, an AG (Arabidopsis thaliana MADS-box C-type transcription factor gene AGAMOUS) homologue from cocoa (Theobroma cacao L.). TcAG was in the cocoa flower expressed primarily in stamens and ovaries, comparable to AG in Arabidopsis. Additionally, we found that T

  11. Bursts de raios gama

    Science.gov (United States)

    Braga, J.

    2003-02-01

    Nos últimos anos, graças principalmente aos dados obtidos pelo Compton Gamma-Ray Observatory e pelo satélite ítalo-holandês BeppoSAX, grandes avanços foram obtidos no nosso conhecimento sobre os fascinantes e enigmáticos fenômenos conhecidos por "bursts"de raios gama. Neste trabalho é feita uma revisão sobre a fenomenologia desses misteriosos objetos e são apresentados os desenvolvimentos recentes nessa área palpitante da astrofísica moderna, ressaltando tanto os resultados observacionais obtidos até o momento quanto os modelos teóricos propostos para explixá-los.

  12. Quantum Key Based Burst Confidentiality in Optical Burst Switched Networks

    Directory of Open Access Journals (Sweden)

    A. M. Balamurugan

    2014-01-01

    Full Text Available The optical burst switching (OBS is an emergent result to the technology concern that could achieve a feasible network in future. They are endowed with the ability to meet the bandwidth requirement of those applications that require intensive bandwidth. There are more domains opening up in the OBS that evidently shows their advantages and their capability to face the future network traffic. However, the concept of OBS is still far from perfection facing issues in case of security threat. The transfer of optical switching paradigm to optical burst switching faces serious downfall in the fields of burst aggregation, routing, authentication, dispute resolution, and quality of service (QoS. This paper deals with employing RC4 (stream cipher to encrypt and decrypt bursts thereby ensuring the confidentiality of the burst. Although the use of AES algorithm has already been proposed for the same issue, by contrasting the two algorithms under the parameters of burst encryption and decryption time, end-to-end delay, it was found that RC4 provided better results. This paper looks to provide a better solution for the confidentiality of the burst in OBS networks.

  13. Quantum key based burst confidentiality in optical burst switched networks.

    Science.gov (United States)

    Balamurugan, A M; Sivasubramanian, A

    2014-01-01

    The optical burst switching (OBS) is an emergent result to the technology concern that could achieve a feasible network in future. They are endowed with the ability to meet the bandwidth requirement of those applications that require intensive bandwidth. There are more domains opening up in the OBS that evidently shows their advantages and their capability to face the future network traffic. However, the concept of OBS is still far from perfection facing issues in case of security threat. The transfer of optical switching paradigm to optical burst switching faces serious downfall in the fields of burst aggregation, routing, authentication, dispute resolution, and quality of service (QoS). This paper deals with employing RC4 (stream cipher) to encrypt and decrypt bursts thereby ensuring the confidentiality of the burst. Although the use of AES algorithm has already been proposed for the same issue, by contrasting the two algorithms under the parameters of burst encryption and decryption time, end-to-end delay, it was found that RC4 provided better results. This paper looks to provide a better solution for the confidentiality of the burst in OBS networks.

  14. NADPH Oxidase-Dependent NLRP3 Inflammasome Activation and its Important Role in Lung Fibrosis by Multiwalled Carbon Nanotubes.

    Science.gov (United States)

    Sun, Bingbing; Wang, Xiang; Ji, Zhaoxia; Wang, Meiying; Liao, Yu-Pei; Chang, Chong Hyun; Li, Ruibin; Zhang, Haiyuan; Nel, André E; Xia, Tian

    2015-05-06

    The purpose of this paper is to elucidate the key role of NADPH oxidase in NLRP3 inflammasome activation and generation of pulmonary fibrosis by multi-walled carbon nanotubes (MWCNTs). Although it is known that oxidative stress plays a role in pulmonary fibrosis by single-walled CNTs, the role of specific sources of reactive oxygen species, including NADPH oxidase, in inflammasome activation remains to be clarified. In this study, three long aspect ratio (LAR) materials (MWCNTs, single-walled carbon nanotubes, and silver nanowires) are used to compare with spherical carbon black and silver nanoparticles for their ability to trigger oxygen burst activity and NLRP3 assembly. All LAR materials but not spherical nanoparticles induce robust NADPH oxidase activation and respiratory burst activity in THP-1 cells, which are blunted in p22(phox) -deficient cells. The NADPH oxidase is directly involved in lysosomal damage by LAR materials, as demonstrated by decreased cathepsin B release and IL-1β production in p22(phox) -deficient cells. Reduced respiratory burst activity and inflammasome activation are also observed in bone marrow-derived macrophages from p47(phox) -deficient mice. Moreover, p47(phox) -deficient mice have reduced IL-1β production and lung collagen deposition in response to MWCNTs. Lung fibrosis is also suppressed by N-acetyl-cysteine in wild-type animals exposed to MWCNTs.

  15. Lysyl oxidase in colorectal cancer

    DEFF Research Database (Denmark)

    Cox, Thomas R; Erler, Janine T

    2013-01-01

    Colorectal cancer is the third most prevalent form of cancer worldwide and fourth-leading cause of cancer-related mortality, leading to ~600,000 deaths annually, predominantly affecting the developed world. Lysyl oxidase is a secreted, extracellular matrix-modifying enzyme previously suggested...... to act as a tumor suppressor in colorectal cancer. However, emerging evidence has rapidly implicated lysyl oxidase in promoting metastasis of solid tumors and in particular colorectal cancer at multiple stages, affecting tumor cell proliferation, invasion, and angiogenesis. This emerging research has...... advancements in the field of colorectal cancer....

  16. The GLAST Burst Monitor (GBM)

    OpenAIRE

    Lichti, G. G.; Briggs, M.S.; Diehl, R.; Fishman, G.; Georgii, R.; Kippen, R. M.; Kouveliotou, C.; Meegan, C.; Paciesas, W.; Preece, R.; Schoenfelder, V.; von Kienlin, A.

    2001-01-01

    The selection of the GLAST burst monitor (GBM) by NASA will allow the investigation of the relation between the keV and the MeV-GeV emission from gamma-ray bursts. The GBM consists of 12 NaI and 2 BGO crystals allowing a continuous measurement of the energy spectra of gamma-ray bursts from ~5 keV to \\~30 MeV. One feature of the GBM is its high time resolution for time-resolved gamma-ray spectroscopy. Moreover the arrangement of the NaI crystals allows a rapid on-board location (

  17. Concept for LEU Burst Reactor

    Energy Technology Data Exchange (ETDEWEB)

    Klein, Steven Karl [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Kimpland, Robert Herbert [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2016-03-07

    Design and performance of a proposed LEU burst reactor are sketched. Salient conclusions reached are the following: size would be ~1,500 kg or greater, depending on the size of the central cavity; internal stresses during burst require split rings for relief; the reactor would likely require multiple control and safety rods for fine control; the energy spectrum would be comparable to that of HEU machines; and burst yields and steady-state power levels will be significantly greater in an LEU reactor.

  18. Flavoprotein oxidases : classification and applications

    NARCIS (Netherlands)

    Dijkman, Willem P.; de Gonzalo, Gonzalo; Mattevi, Andrea; Fraaije, Marco W.

    2013-01-01

    This review provides an overview of oxidases that utilise a flavin cofactor for catalysis. This class of oxidative flavoenzymes has shown to harbour a large number of biotechnologically interesting enzymes. Applications range from their use as biocatalysts for the synthesis of pharmaceutical compoun

  19. Monolayer structures of alkyl aldehydes: Odd-membered homologues

    Energy Technology Data Exchange (ETDEWEB)

    Phillips, T.K. [BP Institute, Department of Chemistry, University of Cambridge, Cambridge (United Kingdom); Clarke, S.M., E-mail: stuart@bpi.cam.ac.u [BP Institute, Department of Chemistry, University of Cambridge, Cambridge (United Kingdom); Bhinde, T. [BP Institute, Department of Chemistry, University of Cambridge, Cambridge (United Kingdom); Castro, M.A.; Millan, C. [Instituto Ciencia de los Materiales de Sevilla, Departamento de Quimica Inorganica (CSIC-Universidad de Sevilla) (Spain); Medina, S. [Centro de Investigacion, Tecnologia e Innovacion de la Universidad de Sevilla (CITIUS), Sevilla (Spain)

    2011-03-01

    Crystalline monolayers of three aldehydes with an odd number of carbon atoms in the alkyl chain (C{sub 7}, C{sub 9} and C{sub 11}) at low coverages are observed by a combination of X-ray and neutron diffraction. Analysis of the diffraction data is discussed and possible monolayer crystal structures are proposed; although unique structures could not be ascertained for all molecules. We conclude that the structures are flat on the surface, with the molecules lying in the plane of the layer. The C{sub 11} homologue is determined to have a plane group of either p2, pgb or pgg, and for the C{sub 7} homologue the p2 plane group is preferred.

  20. Characterization of mouse Dach2, a homologue of Drosophila dachshund.

    Science.gov (United States)

    Davis, R J; Shen, W; Sandler, Y I; Heanue, T A; Mardon, G

    2001-04-01

    The Drosophila genes eyeless, eyes absent, sine oculis and dachshund cooperate as components of a network to control retinal determination. Vertebrate homologues of these genes have been identified and implicated in the control of cell fate. We present the cloning and characterization of mouse Dach2, a homologue of dachshund. In situ hybridization studies demonstrate Dach2 expression in embryonic nervous tissues, sensory organs and limbs. This pattern is similar to mouse Dach1, suggesting a partially redundant role for these genes during development. In addition, we determine that Dach2 expression in the forebrain of Pax6 mutants and dermamyotome of Pax3 mutants is not detectably altered. Finally, genetic mapping experiments place mouse Dach2 on the X chromosome between Xist and Esx1. The identification of human DACH2 sequences at Xq21 suggests a possible role for this gene in Allan-Herndon syndrome, Miles-Carpenter syndrome, X-linked cleft palate and/or Megalocornea.

  1. 30 CFR 57.3461 - Rock bursts.

    Science.gov (United States)

    2010-07-01

    ... 30 Mineral Resources 1 2010-07-01 2010-07-01 false Rock bursts. 57.3461 Section 57.3461 Mineral...-Underground Only § 57.3461 Rock bursts. (a) Operators of mines which have experienced a rock burst shall— (1) Within twenty four hours report to the nearest MSHA office each rock burst which: (i) Causes persons...

  2. Mammalian homologue of the calcium-sensitive phosphoglycoprotein, parafusin.

    Science.gov (United States)

    Wyroba, E; Widding Høyer, A; Storgaard, P; Satir, B H

    1995-12-01

    Three specific antipeptide antibodies and oligonucleotide probes synthesized to internal sequences of parafusin have been used to search for mammalian counterpart(s) of this protein. Parafusin is an exocytic-sensitive phosphoglycoprotein from a unicellular eukaryote Paramecium that was recently cloned and sequenced (Subramanian et al., Proc. Natl. Acad. Sci. USA 91, 9832-9836 (1994)). Western and Southern blot analyses, polymerase chain reaction (PCR) and reverse transcriptase coupled PCR (RT-PCR) techniques have been used to examine rat liver and pancreas, human pancreas and a murine pancreatic beta-cell line (beta TC3) arising in transgenic mice. The parafusin-specific antibodies showed cross-reaction with a protein at approximately 63 kDa in 4 tissues, whereas a phosphoglucomutase-specific antibody also detected a second band of similar molecular weight in the beta TC3 cells. The presence of two bands shows that parafusin homologue(s) and phosphoglucomutase are separate entities. beta TC3 cells were shown to incorporate [beta 35]UDPGlc into the parafusin homologue in a Ca(++)-sensitive manner characteristic of parafusin. Southern blot analysis revealed that the parafusin-specific probe hybridized with restriction enzyme digests of rat DNA in distinct patterns different from those observed with a phosphoglucomutase-specific probe. Rat genomic DNA and mRNA from the beta TC3 cells were used as the templates for PCR and RT-PCR using internal parafusin primers. In both cases similarly sized products were obtained which hybridized in Southern analysis with a specific parafusion probe located within the amplified region. These results indicate that a parafusin homologue exists in mammalian cells.

  3. Disinhibition Bursting of Dopaminergic Neurons

    Directory of Open Access Journals (Sweden)

    Collin J Lobb

    2011-05-01

    Full Text Available Substantia nigra pars compacta (SNpc dopaminergic neurons receive strong tonic inputs from GABAergic neurons in the substantia nigra pars reticulata (SNpr and globus pallidus (GP, and glutamatergic neurons in the subthalamic nucleus. The presence of these tonic inputs raises the possibility that phasic disinhibition may trigger phasic bursts in dopaminergic neurons. We first applied constant NMDA and GABAA conductances onto a two-compartment single cell model of the dopaminergic neuron (Kuznetsov et al., 2006. The model exhibited disinhibition bursting upon stepwise removal of inhibition. A further bifurcation analysis suggests that disinhibition may be more robust than excitation alone in that for most levels of NMDA conductance, the cell remains capable of bursting even after a complete removal of inhibition, whereas too much excitatory input will drive the cell into depolarization block. To investigate the network dynamics of disinhibition, we used a modified version of an integrate-and-fire based model of the basal ganglia (Humphries et al., 2006. Synaptic activity generated in the network was delivered to the two-compartment single cell dopaminergic neuron. Phasic activation of the D1-expressing medium spiny neurons in the striatum (D1STR produced disinhibition bursts in dopaminergic neurons through the direct pathway (D1STR to SNpr to SNpc. Anatomical studies have shown that D1STR neurons have collaterals that terminate in GP. Adding these collaterals to the model, we found that striatal activation increased the intra-burst firing frequency of the disinhibition burst as the weight of this connection was increased. Our studies suggest that striatal activation is a robust means by which disinhibition bursts can be generated by SNpc dopaminergic neurons, and that recruitment of the indirect pathway via collaterals may enhance disinhibition bursting.

  4. Burst Suppression: A Review and New Insights

    Directory of Open Access Journals (Sweden)

    Jonathan Dillon Kenny

    2014-12-01

    Full Text Available Burst suppression is a pattern of brain electrical activity characterized by alternating periods of high-amplitude bursts and electrical silence. Burst suppression can arise from several different pathological conditions, as well as from general anesthesia. Here we review current algorithms that are used to quantify burst suppression, its various etiologies, and possible underlying mechanisms. We then review clinical applications of anesthetic-induced burst suppression. Finally, we report the results of our new study showing clear electrophysiological differences in burst suppression patterns induced by two common general anesthetics, sevoflurane and propofol. Our data suggest that the circuit mechanisms that generate burst suppression activity may differ between different general anesthetics.

  5. Gamma-ray burst models.

    Science.gov (United States)

    King, Andrew

    2007-05-15

    I consider various possibilities for making gamma-ray bursts, particularly from close binaries. In addition to the much-studied neutron star+neutron star and black hole+neutron star cases usually considered good candidates for short-duration bursts, there are also other possibilities. In particular, neutron star+massive white dwarf has several desirable features. These systems are likely to produce long-duration gamma-ray bursts (GRBs), in some cases definitely without an accompanying supernova, as observed recently. This class of burst would have a strong correlation with star formation and occur close to the host galaxy. However, rare members of the class need not be near star-forming regions and could have any type of host galaxy. Thus, a long-duration burst far from any star-forming region would also be a signature of this class. Estimates based on the existence of a known progenitor suggest that this type of GRB may be quite common, in agreement with the fact that the absence of a supernova can only be established in nearby bursts.

  6. Chromate reduction by rabbit liver aldehyde oxidase

    Energy Technology Data Exchange (ETDEWEB)

    Banks, R.B.; Cooke, R.T. Jr.

    1986-05-29

    Chromate was reduced during the oxidation of 1-methylnicotinamide chlorine by partially purified rabbit liver aldehyde oxidase. In addition to l-methylnicotinamide, several other electron donor substrates for aldehyde oxidase were able to support the enzymatic chromate reduction. The reduction required the presence of both enzyme and the electron donor substrate. The rate of the chromate reduction was retarded by inhibitors or aldehyde oxidase but was not affected by substrates or inhibitors of xanthine oxidase. These results are consistent with the involvement of aldehyde oxidase in the reduction of chromate by rabbit liver cytosolic enzyme preparations.

  7. Do Gamma-Ray Burst Sources Repeat?

    OpenAIRE

    Meegan, Charles A.; Hartmann, Dieter H.; Brainerd, J. J.; Briggs, Michael S.; Paciesas, William S.; Pendleton, Geoffrey; Kouveliotou, Chryssa; Fishman, Gerald; Blumenthal, George; Brock, Martin

    1995-01-01

    The demonstration of repeated gamma-ray bursts from an individual source would severely constrain burst source models. Recent reports (Quashnock and Lamb 1993; Wang and Lingenfelter 1993) of evidence for repetition in the first BATSE burst catalog have generated renewed interest in this issue. Here, we analyze the angular distribution of 585 bursts of the second BATSE catalog (Meegan et al. 1994). We search for evidence of burst recurrence using the nearest and farthest neighbor statistic and...

  8. Multiple amine oxidases in cucumber seedlings.

    Science.gov (United States)

    Percival, F W; Purves, W K

    1974-10-01

    Cell-free extracts of cucumber (Cucumis sativus L. cv. National Pickling) seedlings were found to have amine oxidase activity when assayed with tryptamine as a substrate. Studies of the effect of lowered pH on the extract indicated that this activity was heterogeneous, and three amine oxidases could be separated by ion exchange chromatography. The partially purified enzymes were tested for their activities with several substrates and for their sensitivities to various amine oxidase inhibitors. One of the enzymes may be a monoamine oxidase, although it is inhibited by some diamine oxidase inhibitors. The other two enzymes have properties more characteristic of the diamine oxidases. The possible relationship of the amine oxidases to indoleacetic acid biosynthesis in cucumber seedlings is discussed.

  9. RhoA/ROCK downregulates FPR2-mediated NADPH oxidase activation in mouse bone marrow granulocytes.

    Science.gov (United States)

    Filina, Julia V; Gabdoulkhakova, Aida G; Safronova, Valentina G

    2014-10-01

    Polymorphonuclear neutrophils (PMNs) express the high and low affinity receptors to formylated peptides (mFPR1 and mFPR2 in mice, accordingly). RhoA/ROCK (Rho activated kinase) pathway is crucial for cell motility and oxidase activity regulated via FPRs. There are contradictory data on RhoA-mediated regulation of NADPH oxidase activity in phagocytes. We have shown divergent Rho GTPases signaling via mFPR1 and mFPR2 to NADPH oxidase in PMNs from inflammatory site. The present study was aimed to find out the role of RhoA/ROCK in the respiratory burst activated via mFPR1 and mFPR2 in the bone marrow PMNs. Different kinetics of RhoA activation were detected with 0.1μM fMLF and 1μM WKYMVM operating via mFPR1 and mFPR2, accordingly. RhoA was translocated in fMLF-activated cells towards the cell center and juxtamembrane space versus uniform allocation in the resting cells. Specific inhibition of RhoA by CT04, Rho inhibitor I, weakly depressed the respiratory burst induced via mFPR1, but significantly increased the one induced via mFPR2. Inhibition of ROCK, the main effector of RhoA, by Y27632 led to the same effect on the respiratory burst. Regulation of mFPR2-induced respiratory response by ROCK was impossible under the cytoskeleton disruption by cytochalasin D, whereas it persisted in the case of mFPR1 activation. Thus we suggest RhoA to be one of the regulatory and signal transduction components in the respiratory burst through FPRs in the mouse bone marrow PMNs. Both mFPR1 and mFPR2 binding with a ligand trigger the activation of RhoA. FPR1 signaling through RhoA/ROCK increases NADPH-oxidase activity. But in FPR2 action RhoA/ROCK together with cytoskeleton-linked systems down-regulates NADPH-oxidase. This mechanism could restrain the reactive oxygen species dependent damage of own tissues during the chemotaxis of PMNs and in the resting cells.

  10. Lysyl oxidase in cancer research.

    Science.gov (United States)

    Perryman, Lara; Erler, Janine T

    2014-01-01

    Metastasis is the main reason for cancer-associated deaths and therapies are desperately needed to target the progression of cancer. Lysyl oxidase (LOX) plays a pivotal role in cancer progression, including metastasis, and is therefore is an attractive therapeutic target. In this review we will breakdown the process of cancer progression and the various roles that LOX plays has in the advancement of cancer. We will highlight why LOX is an exciting therapeutic target for the future.

  11. Broadband Spectral Study of Magnetar Bursts

    Science.gov (United States)

    Kirmizibayrak, Demet; Gogus, Ersin; Sasmaz Mus, Sinem; Kaneko, Yuki

    2016-07-01

    Magnetar bursts occur sporadically on random occasions, and every burst-active episode carries unique information about the bursting magnetar. Therefore, in-depth spectral and temporal analyses of each of the magnetar bursts provide new insights into the bursting and radiation mechanisms. There have been a number of studies over the last decade, investigating the spectral and temporal properties of magnetar bursts. The spectra of typical magnetar bursts were generally described with the Comptonized model or the sum of two blackbody functions. However, it was recently shown that the actual spectral nature of these bursts can be conclusively determined if the spectral analysis is performed on a wide energy coverage. We present the results of in-depth systematic broadband (2 - 250 keV) spectral analysis of a large number of bursts originated from three magnetars: SGR 1806-20, SGR 1900+14, and SGR J1550-5418, observed with the Rossi X-ray Timing Explorer.

  12. Molecular evolution of the polyamine oxidase gene family in Metazoa

    Directory of Open Access Journals (Sweden)

    Polticelli Fabio

    2012-06-01

    Full Text Available Abstract Background Polyamine oxidase enzymes catalyze the oxidation of polyamines and acetylpolyamines. Since polyamines are basic regulators of cell growth and proliferation, their homeostasis is crucial for cell life. Members of the polyamine oxidase gene family have been identified in a wide variety of animals, including vertebrates, arthropodes, nematodes, placozoa, as well as in plants and fungi. Polyamine oxidases (PAOs from yeast can oxidize spermine, N1-acetylspermine, and N1-acetylspermidine, however, in vertebrates two different enzymes, namely spermine oxidase (SMO and acetylpolyamine oxidase (APAO, specifically catalyze the oxidation of spermine, and N1-acetylspermine/N1-acetylspermidine, respectively. Little is known about the molecular evolutionary history of these enzymes. However, since the yeast PAO is able to catalyze the oxidation of both acetylated and non acetylated polyamines, and in vertebrates these functions are addressed by two specialized polyamine oxidase subfamilies (APAO and SMO, it can be hypothesized an ancestral reference for the former enzyme from which the latter would have been derived. Results We analysed 36 SMO, 26 APAO, and 14 PAO homologue protein sequences from 54 taxa including various vertebrates and invertebrates. The analysis of the full-length sequences and the principal domains of vertebrate and invertebrate PAOs yielded consensus primary protein sequences for vertebrate SMOs and APAOs, and invertebrate PAOs. This analysis, coupled to molecular modeling techniques, also unveiled sequence regions that confer specific structural and functional properties, including substrate specificity, by the different PAO subfamilies. Molecular phylogenetic trees revealed a basal position of all the invertebrates PAO enzymes relative to vertebrate SMOs and APAOs. PAOs from insects constitute a monophyletic clade. Two PAO variants sampled in the amphioxus are basal to the dichotomy between two well supported

  13. Amplitude-Modulated Bursting: A Novel Class of Bursting Rhythms

    Science.gov (United States)

    Vo, Theodore; Kramer, Mark A.; Kaper, Tasso J.

    2016-12-01

    We report on the discovery of a novel class of bursting rhythms, called amplitude-modulated bursting (AMB), in a model for intracellular calcium dynamics. We find that these rhythms are robust and exist on open parameter sets. We develop a new mathematical framework with broad applicability to detect, classify, and rigorously analyze AMB. Here we illustrate this framework in the context of AMB in a model of intracellular calcium dynamics. In the process, we discover a novel family of singularities, called toral folded singularities, which are the organizing centers for the amplitude modulation and exist generically in slow-fast systems with two or more slow variables.

  14. In vitro dentine remineralization with a potential salivary phosphoprotein homologue.

    Science.gov (United States)

    Romero, Maria Jacinta Rosario H; Nakashima, Syozi; Nikaido, Toru; Sadr, Alireza; Tagami, Junji

    2016-08-01

    Advantages of introducing a salivary phosphoprotein homologue under standardized in vitro conditions to simulate the mineral-stabilizing properties of saliva have been proposed. This study longitudinally investigates the effects of casein, incorporated as a potential salivary phosphoprotein homologue in artificial saliva (AS) solutions with/without fluoride (F) on in vitro dentine lesion remineralization. Thin sections of bovine root dentine were demineralized and allocated randomly into 6 groups (n=18) having equivalent mineral loss (ΔZ) after transverse microradiography (TMR). The specimens were remineralized using AS solutions containing casein 0μg/ml, F 0ppm (C0-F0); casein 0μg/ml, F 1ppm (C0-F1); casein 10μg/ml, F 0ppm (C10-F0); casein 10μg/ml, F 1ppm (C10-F1); casein 100μg/ml, F 0ppm (C100-F0) or casein 100μg/ml, F 1ppm (C100-F1) for 28days with TMR taken every 7 days. Surface mineral precipitation, evident in group C0-F1, was apparently inhibited in groups with casein incorporation. Repeated measures ANOVA with Bonferroni correction revealed higher ΔZ for non-F and non-casein groups than for their counterparts (p<0.001). Subsequent multiple comparisons showed that mineral gain was higher (p<0.001) with 10μg/ml casein than with 100μg/ml when F was present in the earlier stages of remineralization, with both groups achieving almost complete remineralization after 28 days. Casein is a potential salivary phosphoprotein homologue that could be employed for in vitro dentine remineralization studies. Concentration related effects may be clinically significant and thus must be further examined. Copyright © 2016 Elsevier Ltd. All rights reserved.

  15. Bursts in intermittent aeolian saltation

    CERN Document Server

    Carneiro, M V; Herrmann, H J

    2014-01-01

    Close to the onset of Aeolian particle transport through saltation we find in wind tunnel experiments a regime of intermittent flux characterized by bursts of activity. Scaling laws are observed in the time delay between each burst and in the measurements of the wind fluctuations at the critical Shields number $\\theta_c$. The time delay between each burst decreases on average with the increase of the Shields number until saltation becomes non-intermittent and the sand flux becomes continuous. A numerical model for saltation including the wind-entrainment from the turbulent fluctuations can reproduce these observations and gives insight about their origin. We present here also for the first time measurements showing that with feeding it becomes possible to sustain intermittent flux even below the threshold $\\theta_c$ for natural saltation initiation.

  16. Cloning of an agr homologue of Staphylococcus saprophyticus.

    Science.gov (United States)

    Sakinc, Türkan; Kulczak, Pawel; Henne, Karsten; Gatermann, Sören G

    2004-08-01

    An agr homologue of Staphylococcus saprophyticus was identified, cloned and sequenced. The gene locus shows homologies to other staphylococcal agr systems, especially to those of S. epidermidis and S. lugdunensis. A putative RNAIII was identified and found to be differentially expressed during the growth phases. In contrast to the RNAIII molecules of S. epidermidis and S. aureus it does not contain an open reading frame that codes for a protein with homologies to the delta-toxin. Using PCR, the agr was found to be present in clinical isolates of S. saprophyticus.

  17. Alkylresorcinol content and homologue composition in durum wheat (Triticum durum) kernels and pasta products.

    Science.gov (United States)

    Landberg, Rikard; Kamal-Eldin, Afaf; Andersson, Roger; Aman, Per

    2006-04-19

    The total alkylresorcinol (AR) content and relative homologue composition of 21 durum wheat (Triticum durum) kernel samples, as well as 5 pasta products and the corresponding flour mixtures, were determined. Durum wheat contained on average 455 microg/g ARs, and the average relative homologue composition was C17:0 (0.4%), C19:0 (14%), C21:0 (58%), C23:0 (21%), and C25:0 (6.5%). The homologue composition was found to be relatively consistent among samples, with durum wheat being different from common wheat by having a higher proportion of the longer homologues. No differences in content or homologue composition were observed in pasta products compared to flour ingredients, showing that alkylresorcinols are stable during pasta processing. The ratio of the homologues C17:0 to C21:0 was wheat products, which is different from those of common wheat (0.1) and rye (0.9).

  18. High Redshift Gamma Ray Bursts

    Science.gov (United States)

    Gehrels, Neil

    2012-01-01

    The Swift Observatory has been detecting 100 gamma-ray bursts per year for 7 years and has greatly stimulated the field with new findings. Observations are made of the X-ray and optical afterglow from 1 minute after the burst, continuing for days. GRBs are providing a new tool to study the high redshift universe. Swift has detected several events at z>5 and one at z=9.4 giving information on metallicity, star formation rate and reionization. The talk will present the latest results.

  19. Selected chromone derivatives as inhibitors of monoamine oxidase.

    Science.gov (United States)

    Legoabe, Lesetja J; Petzer, Anél; Petzer, Jacobus P

    2012-09-01

    A previous study has shown that a series of C6-benzyloxy substituted chromones exhibit high binding affinities for human monoamine oxidase (MAO) B. In an attempt to discover additional chromones with potent and selective MAO-B inhibitory potencies and to further examine the structure-activity relationships of MAO-B inhibition by chromones, the series was expanded with homologues containing polar functional groups on C3 of the chromone ring. The results demonstrate that 6-[(3-bromobenzyl)oxy]chromones containing acidic and aldehydic functional groups on C3 act as potent reversible MAO-B inhibitors with IC(50) values of 2.8 and 3.7 nM, respectively. Interestingly, a 2-hydroxy-2,3-dihydro-1-benzopyran-4-one derivative as well as open-ring 2-acetylphenol analogues of the chromones also were potent MAO-B inhibitors with IC(50) values ranging from 4 to 11 nM. Chromone derivatives containing the benzyloxy substituent on C5 of the chromone ring, however, exhibit MAO-B inhibition potencies that are several orders of magnitude weaker. High potency inhibitors of MAO-B may find application in the therapy of neurodegenerative disorders such as Parkinson's disease. Copyright © 2012 Elsevier Ltd. All rights reserved.

  20. Fungal phytopathogens encode functional homologues of plant rapid alkalinization factor (RALF) peptides.

    Science.gov (United States)

    Thynne, Elisha; Saur, Isabel M L; Simbaqueba, Jaime; Ogilvie, Huw A; Gonzalez-Cendales, Yvonne; Mead, Oliver; Taranto, Adam; Catanzariti, Ann-Maree; McDonald, Megan C; Schwessinger, Benjamin; Jones, David A; Rathjen, John P; Solomon, Peter S

    2016-06-13

    In this article, we describe the presence of genes encoding close homologues of an endogenous plant peptide, rapid alkalinization factor (RALF), within the genomes of 26 species of phytopathogenic fungi. Members of the RALF family are key growth factors in plants, and the sequence of the RALF active region is well conserved between plant and fungal proteins. RALF1-like sequences were observed in most cases; however, RALF27-like sequences were present in the Sphaerulina musiva and Septoria populicola genomes. These two species are pathogens of poplar and, interestingly, the closest relative to their respective RALF genes is a poplar RALF27-like sequence. RALF peptides control cellular expansion during plant development, but were originally defined on the basis of their ability to induce rapid alkalinization in tobacco cell cultures. To test whether the fungal RALF peptides were biologically active in plants, we synthesized RALF peptides corresponding to those encoded by two sequenced genomes of the tomato pathogen Fusarium oxysporum f. sp. lycopersici. One of these peptides inhibited the growth of tomato seedlings and elicited responses in tomato and Nicotiana benthamiana typical of endogenous plant RALF peptides (reactive oxygen species burst, induced alkalinization and mitogen-activated protein kinase activation). Gene expression analysis confirmed that a RALF-encoding gene in F. oxysporum f. sp. lycopersici was expressed during infection on tomato. However, a subsequent reverse genetics approach revealed that the RALF peptide was not required by F. oxysporum f. sp. lycopersici for infection on tomato roots. This study has demonstrated the presence of functionally active RALF peptides encoded within phytopathogens that harbour an as yet undetermined role in plant-pathogen interactions.

  1. The terminal oxidases of Paracoccus denitrificans

    OpenAIRE

    de Gier, Jan-Willem L.; Lübben, Mathias; Reijnders, Willem N.M.; Tipker, Corinne A.; Slotboom, Dirk-Jan; Van Spanning, Rob J. M.; Stouthamer, Adriaan H.; van der Oost, John

    1994-01-01

    Three distinct types of terminal oxidases participate in the aerobic respiratory pathways of Paracoccus denitrificans. Two alternative genes encoding subunit I of the aa3-type cytochrome c oxidase have been isolated before, namely ctaDI and ctaDII. Each of these genes can be expressed separately to complement a double mutant (ΔctaDI, ΔctaDII), indicating that they are isoforms of subunit I of the aa3-type oxidase. The genomic locus of a quinol oxidase has been isolated: cyoABC. This protohaem...

  2. Structure of a DsbF homologue from Corynebacterium diphtheriae.

    Science.gov (United States)

    Um, Si-Hyeon; Kim, Jin-Sik; Lee, Kangseok; Ha, Nam-Chul

    2014-09-01

    Disulfide-bond formation, mediated by the Dsb family of proteins, is important in the correct folding of secreted or extracellular proteins in bacteria. In Gram-negative bacteria, disulfide bonds are introduced into the folding proteins in the periplasm by DsbA. DsbE from Escherichia coli has been implicated in the reduction of disulfide bonds in the maturation of cytochrome c. The Gram-positive bacterium Mycobacterium tuberculosis encodes DsbE and its homologue DsbF, the structures of which have been determined. However, the two mycobacterial proteins are able to oxidatively fold a protein in vitro, unlike DsbE from E. coli. In this study, the crystal structure of a DsbE or DsbF homologue protein from Corynebacterium diphtheriae has been determined, which revealed a thioredoxin-like domain with a typical CXXC active site. Structural comparison with M. tuberculosis DsbF would help in understanding the function of the C. diphtheriae protein.

  3. FERMIGBRST - Fermi GBM Burst Catalog

    Data.gov (United States)

    National Aeronautics and Space Administration — This table lists all of the triggers observed by a subset of the 14 GBM detectors (12 NaI and 2 BGO) which have been classified as gamma-ray bursts (GRBs). Note that...

  4. Microscopic characteristics of burst coal seams

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, H.; Wang, C. [Shandong University of Science and Technology (China)

    2000-08-01

    Based on the analytical results of coal samples with microscope and scanning electron microscope, the paper explains the petrographic characteristics and microscopic depredation of burst coal. Quantitative analysis on the components and microstructures of the burst coal is conducted. The influence of the microscopic characteristics on coal burst is discussed. For coal seams with burst tendency, it has provided the necessary forecasting parameters. 2 refs., 1 fig., 2 tabs.

  5. Millisecond extragalactic radio bursts as magnetar flares

    CERN Document Server

    Popov, S B

    2013-01-01

    Properties of the population of millisecond extragalactic radio bursts discovered by Thornton et al. (2013) are in good correspondence with the hypothesis that such events are related to hyperflares of magnetars, as was proposed by us after the first observation of an extragalactic millisecond radio burst by Lorimer et al. (2007). We also point that some of multiple millisecond radio bursts from M31 discovered by Rubio-Herrera et al. (2013) also can be related to weaker magnetar bursts.

  6. Flavonoids Inhibit the Respiratory Burst of Neutrophils in Mammals

    Directory of Open Access Journals (Sweden)

    Milan Ciz

    2012-01-01

    Full Text Available Neutrophils represent the front-line defence cells in protecting organisms against infection and play an irreplaceable role in the proper performance of the immune system. As early as within the first minutes of stimulation, neutrophilic NADPH oxidase is activated, and cells release large quantities of highly toxic reactive oxygen species (ROS. These oxidants can be highly toxic not only for infectious agents but also for neighboring host tissues. Since flavonoids exhibit antioxidant and anti-inflammatory effects, they are subjects of interest for pharmacological modulation of ROS production. The present paper summarizes contemporary knowledge on the effects of various flavonoids on the respiratory burst of mammalian neutrophils. It can be summarized that the inhibitory effects of flavonoids on the respiratory burst of phagocytes are mediated via inhibition of enzymes involved in cell signaling as well as via modulation of redox status. However, the effects of flavonoids are even more complex, and several sites of action, depending upon the flavonoid structure and way of application, are included.

  7. Histamine homologues discriminating between two functional H3 receptor assays. Evidence for H3 receptor heterogeneity?.

    Science.gov (United States)

    Leurs, R; Kathmann, M; Vollinga, R C; Menge, W M; Schlicker, E; Timmerman, H

    1996-03-01

    We studied several histamine homologues as potential ligands for the histamine H3 receptor in two binding assays ([125l]iodophenpropit and N alpha-[3H]methylhistamine binding to rat brain cortex membranes) and two functional H3 receptor models (inhibition of the neurogenic contraction in the guinea pig jejunum and of [3H]noradrenaline release in mouse brain cortex slices). The histamine homologues acted all as competitive H3 antagonists at the guinea pig jejunum. The potency in this model and/or the affinity for N alpha-[3H]methylhistamine binding was higher for the butylene (pA2 = 7.7; pKi = 9.4) and pentylene homologue (impentamine, pA2 = 8.4; pKi = 9.1) than for the propylene, hexylene and octylene homologues (pA2 = 5.9-7.8; pKi = 6.1-7.6). In the mouse brain cortex the propylene, butylene and pentylene homologues acted as partial agonists (alpha = 0.3-0.6) and the hexylene and octylene homologues acted as antagonists. [125I]Iodophenpropit binding was displaced monophasically by the propylene, hexylene and octylene homologues and biphasically by the butylene and pentylene homologues. Biphasic displacement curves were converted to monophasic ones by 10 microM guanosine-5'-O-(3-thiotriphosphate. In conclusion, the homologue of histamine with five methylene groups is a more potent H3 receptor antagonist in the guinea pig jejunum than the other homologues tested. Furthermore, the propylene, butylene and pentylene homologues can discriminate between the two functional H3 receptor models in the guinea pig jejunum and mouse brain. These data are discussed in relation to the efficiency of receptor coupling and receptor heterogeneity.

  8. Mitochondrial cytochrome c oxidase deficiency.

    Science.gov (United States)

    Rak, Malgorzata; Bénit, Paule; Chrétien, Dominique; Bouchereau, Juliette; Schiff, Manuel; El-Khoury, Riyad; Tzagoloff, Alexander; Rustin, Pierre

    2016-03-01

    As with other mitochondrial respiratory chain components, marked clinical and genetic heterogeneity is observed in patients with a cytochrome c oxidase deficiency. This constitutes a considerable diagnostic challenge and raises a number of puzzling questions. So far, pathological mutations have been reported in more than 30 genes, in both mitochondrial and nuclear DNA, affecting either structural subunits of the enzyme or proteins involved in its biogenesis. In this review, we discuss the possible causes of the discrepancy between the spectacular advances made in the identification of the molecular bases of cytochrome oxidase deficiency and the lack of any efficient treatment in diseases resulting from such deficiencies. This brings back many unsolved questions related to the frequent delay of clinical manifestation, variable course and severity, and tissue-involvement often associated with these diseases. In this context, we stress the importance of studying different models of these diseases, but also discuss the limitations encountered in most available disease models. In the future, with the possible exception of replacement therapy using genes, cells or organs, a better understanding of underlying mechanism(s) of these mitochondrial diseases is presumably required to develop efficient therapy.

  9. Structure of a bacterial homologue of vitamin K epoxide reductase

    Energy Technology Data Exchange (ETDEWEB)

    Li, Weikai; Schulman, Sol; Dutton, Rachel J.; Boyd, Dana; Beckwith, Jon; Rapoport, Tom A. (Harvard-Med); (HHMI)

    2010-03-19

    Vitamin K epoxide reductase (VKOR) generates vitamin K hydroquinone to sustain {gamma}-carboxylation of many blood coagulation factors. Here, we report the 3.6 {angstrom} crystal structure of a bacterial homologue of VKOR from Synechococcus sp. The structure shows VKOR in complex with its naturally fused redox partner, a thioredoxin-like domain, and corresponds to an arrested state of electron transfer. The catalytic core of VKOR is a four transmembrane helix bundle that surrounds a quinone, connected through an additional transmembrane segment with the periplasmic thioredoxin-like domain. We propose a pathway for how VKOR uses electrons from cysteines of newly synthesized proteins to reduce a quinone, a mechanism confirmed by in vitro reconstitution of vitamin K-dependent disulphide bridge formation. Our results have implications for the mechanism of the mammalian VKOR and explain how mutations can cause resistance to the VKOR inhibitor warfarin, the most commonly used oral anticoagulant.

  10. Isolation and characterization of the human MRE11 homologue

    Energy Technology Data Exchange (ETDEWEB)

    Petrini, J.H.J.; Walsh, M.E.; DiMare, C. [Harvard Medical School, Boston, MA (United States)] [and others

    1995-09-01

    Mutation of the Saccharomyces cerevisiae RAD52 epistasis group gene, MRE11, blocks meiotic recombination, confers profound sensitivity to double-strand break damage, and has a hyperrecombinational phenotype in mitotic cells. We isolated a highly conserved human MRE11 homologue using a two-hybrid screen for DNA ligase I-interacting proteins. Human MRE11 shares approximately 50% identity with its yeast counterpart over the N-terminal half of the protein. MRE11 is expressed at the highest levels in proliferating tissues, but is also observed in other tissues. The MRE11 locus maps to human chromosome 11q21 in a region frequently associated with cancer-related chromosomal abnormalities. A MRE11-related locus was found on chromosome 7q11.2-q11.3. 60 refs., 4 figs.

  11. Spindle Bursts in Neonatal Rat Cerebral Cortex

    Directory of Open Access Journals (Sweden)

    Jenq-Wei Yang

    2016-01-01

    Full Text Available Spontaneous and sensory evoked spindle bursts represent a functional hallmark of the developing cerebral cortex in vitro and in vivo. They have been observed in various neocortical areas of numerous species, including newborn rodents and preterm human infants. Spindle bursts are generated in complex neocortical-subcortical circuits involving in many cases the participation of motor brain regions. Together with early gamma oscillations, spindle bursts synchronize the activity of a local neuronal network organized in a cortical column. Disturbances in spindle burst activity during corticogenesis may contribute to disorders in cortical architecture and in the activity-dependent control of programmed cell death. In this review we discuss (i the functional properties of spindle bursts, (ii the mechanisms underlying their generation, (iii the synchronous patterns and cortical networks associated with spindle bursts, and (iv the physiological and pathophysiological role of spindle bursts during early cortical development.

  12. Spindle Bursts in Neonatal Rat Cerebral Cortex.

    Science.gov (United States)

    Yang, Jenq-Wei; Reyes-Puerta, Vicente; Kilb, Werner; Luhmann, Heiko J

    2016-01-01

    Spontaneous and sensory evoked spindle bursts represent a functional hallmark of the developing cerebral cortex in vitro and in vivo. They have been observed in various neocortical areas of numerous species, including newborn rodents and preterm human infants. Spindle bursts are generated in complex neocortical-subcortical circuits involving in many cases the participation of motor brain regions. Together with early gamma oscillations, spindle bursts synchronize the activity of a local neuronal network organized in a cortical column. Disturbances in spindle burst activity during corticogenesis may contribute to disorders in cortical architecture and in the activity-dependent control of programmed cell death. In this review we discuss (i) the functional properties of spindle bursts, (ii) the mechanisms underlying their generation, (iii) the synchronous patterns and cortical networks associated with spindle bursts, and (iv) the physiological and pathophysiological role of spindle bursts during early cortical development.

  13. Listeriolysin O suppresses phospholipase C-mediated activation of the microbicidal NADPH oxidase to promote Listeria monocytogenes infection.

    Science.gov (United States)

    Lam, Grace Y; Fattouh, Ramzi; Muise, Aleixo M; Grinstein, Sergio; Higgins, Darren E; Brumell, John H

    2011-12-15

    The intracellular bacterial pathogen Listeria monocytogenes produces phospholipases C (PI-PLC and PC-PLC) and the pore-forming cytolysin listeriolysin O (LLO) to escape the phagosome and replicate within the host cytosol. We found that PLCs can also activate the phagocyte NADPH oxidase during L. monocytogenes infection, a response that would adversely affect pathogen survival. However, secretion of LLO inhibits the NADPH oxidase by preventing its localization to phagosomes. LLO-deficient bacteria can be complemented by perfringolysin O, a related cytolysin, suggesting that other pathogens may also use pore-forming cytolysins to inhibit the NADPH oxidase. Our studies demonstrate that while the PLCs induce antimicrobial NADPH oxidase activity, this effect is alleviated by the pore-forming activity of LLO. Therefore, the combined activities of PLCs and LLO on membrane lysis and the inhibitory effects of LLO on NADPH oxidase activity allow L. monocytogenes to efficiently escape the phagosome while avoiding the microbicidal respiratory burst. Copyright © 2011 Elsevier Inc. All rights reserved.

  14. Oxidase-based biocatalytic processes

    DEFF Research Database (Denmark)

    Ramesh, Hemalata; Woodley, John; Krühne, Ulrich

    the reaction species (substrate and product volatility for example) and the process (such as oxygen supply, ability to control pH) and are classified as reaction-related and process-related constraintsrespectively. Although the development of biocatalyst and process engineering tools offers a number...... ofsolutions to overcome the limitations, it is often complicated to identify the key limitation of the system that prevents economic scale-up. Hence, development of a systematic method for identifying the limitations during early-stage development of a biocatalytic process and potentially the order in which...... theyneed to be tackled would offer a valuable tool for process development.Biocatalytic oxidationsare potentially of great value because of theselective chemistry that they offer,resulting in higher yieldscompared to thoseachievable through chemical catalysis. Oxidases areparticularly...

  15. Cucumber Seedling Indoleacetaldehyde Oxidase 1

    Science.gov (United States)

    Bower, Peter J.; Brown, Hugh M.; Purves, William K.

    1978-01-01

    Extracts of light-grown Cucumis sativus L. seedlings catalyzed the oxidation of indole-3-acetaldehyde to indole-3-acetic acid. No added cofactors were required. Inhibitor studies indicated that the enzyme is a metalloflavoprotein. While indole-3-aldehyde, benzaldehyde, and phenylacetaldehyde partially inhibited the oxidation of indole-3-acetaldehyde, suggesting that they may serve as alternative substrates, it is proposed that indoleacetaldehyde is the major substrate in vivo. 2,4-Dichlorophenoxyacetic acid strongly inhibited the indoleacetaldehyde oxidase activity, and it is proposed that this enzyme may be subject in vivo to feedback inhibition by indole-3-acetic acid. The enzyme was activated by brief heating or by treatment with mercaptoethanol. PMID:16660220

  16. Role of apoptosis-inducing factor, proline dehydrogenase, and NADPH oxidase in apoptosis and oxidative stress

    Directory of Open Access Journals (Sweden)

    Becker DF

    2012-02-01

    Full Text Available Sathish Kumar Natarajan, Donald F BeckerDepartment of Biochemistry and Redox Biology Center, University of Nebraska-Lincoln, Lincoln, NEAbstract: Flavoproteins catalyze a variety of reactions utilizing flavin mononucleotide or flavin adenine dinucleotide as cofactors. The oxidoreductase properties of flavoenzymes implicate them in redox homeostasis, oxidative stress, and various cellular processes, including programmed cell death. Here we explore three critical flavoproteins involved in apoptosis and redox signaling, ie, apoptosis-inducing factor (AIF, proline dehydrogenase, and NADPH oxidase. These proteins have diverse biochemical functions and influence apoptotic signaling by unique mechanisms. The role of AIF in apoptotic signaling is two-fold, with AIF changing intracellular location from the inner mitochondrial membrane space to the nucleus upon exposure of cells to apoptotic stimuli. In the mitochondria, AIF enhances mitochondrial bioenergetics and complex I activity/assembly to help maintain proper cellular redox homeostasis. After translocating to the nucleus, AIF forms a chromatin degrading complex with other proteins, such as cyclophilin A. AIF translocation from the mitochondria to the nucleus is triggered by oxidative stress, implicating AIF as a mitochondrial redox sensor. Proline dehydrogenase is a membrane-associated flavoenzyme in the mitochondrion that catalyzes the rate-limiting step of proline oxidation. Upregulation of proline dehydrogenase by the tumor suppressor, p53, leads to enhanced mitochondrial reactive oxygen species that induce the intrinsic apoptotic pathway. NADPH oxidases are a group of enzymes that generate reactive oxygen species for oxidative stress and signaling purposes. Upon activation, NADPH oxidase 2 generates a burst of superoxide in neutrophils that leads to killing of microbes during phagocytosis. NADPH oxidases also participate in redox signaling that involves hydrogen peroxide-mediated activation of

  17. Homologue Pairing in Flies and Mammals: Gene Regulation When Two Are Involved

    Directory of Open Access Journals (Sweden)

    Manasi S. Apte

    2012-01-01

    Full Text Available Chromosome pairing is usually discussed in the context of meiosis. Association of homologues in germ cells enables chromosome segregation and is necessary for fertility. A few organisms, such as flies, also pair their entire genomes in somatic cells. Most others, including mammals, display little homologue pairing outside of the germline. Experimental evidence from both flies and mammals suggests that communication between homologues contributes to normal genome regulation. This paper will contrast the role of pairing in transmitting information between homologues in flies and mammals. In mammals, somatic homologue pairing is tightly regulated, occurring at specific loci and in a developmentally regulated fashion. Inappropriate pairing, or loss of normal pairing, is associated with gene misregulation in some disease states. While homologue pairing in flies is capable of influencing gene expression, the significance of this for normal expression remains unknown. The sex chromosomes pose a particularly interesting situation, as females are able to pair X chromosomes, but males cannot. The contribution of homologue pairing to the biology of the X chromosome will also be discussed.

  18. Physics of gamma-ray bursts

    Science.gov (United States)

    Lamb, D. Q.

    1984-01-01

    Attention is given to the accumulating evidence for the view that gamma-ray bursts come from strongly magnetic neutron stars, discussing the physical properties of the emission region and the radiation processes expected in strong magnetic fields, and emphasizing that the observed burst spectra require that the emission region be optically thin. This entails that the energy of the emitting plasma and/or the plasma itself be continuously replenished during a burst, and that the cooling time scale of the emitting plasma be much shorter than the observed duration of the bursts. This characteristic of the cooling time scale implies that the burst intensity and spectrum can vary on extremely short time scales, and that the burst duration must have a separate explanation. It is emphasized that synchrotron emission is favored as the gamma-ray production mechanism; it is the only mechanism capable of satisfying the optical thinness constraint while producing the observed luminosity.

  19. Statistics of gamma ray burst temporal asymmetry

    CERN Document Server

    Link, B; Link, Bennett; Epstein, Richard

    1996-01-01

    We study the temporal asymmetry of over 600 bursts from the BATSE 3B catalog, encompassing a 200-fold range in peak flux. By comparing the rates of rise and fall of the flux near the highest burst peak, we find that about two-thirds of the bursts exhibit a preferred asymmetry in the sense that the flux rises more rapidly than it falls, confirming the conclusions of previous studies employing smaller databases. The statistical significance of the average time asymmetry of the sample is >99.999\\%; therefore, models that predict time symmetry of the burst profile are ruled out. We find no statistically significant correlation between burst temporal asymmetry and peak. This result is consistent with both cosmological and local interpretations of the gamma ray burst phenomenon.

  20. Stirling Colgate and Gamma-Ray Bursts

    Science.gov (United States)

    Lamb, Donald

    2014-10-01

    Even before the discovery of gamma-ray bursts (GRBs), Stirling Colgate proposed that bursts of x rays and gamma rays might be produced by a relativistic shock created in the supernova explosion of a massive star. We trace the scientific story of GRBs from their detection to the present, highlighting along the way Stirling's interest in them and his efforts to understand them. We summarize our current understanding that short, soft, repeating bursts are produced by magnetic neutron stars; short, hard bursts are produced by the mergers of neutron star-neutron star binaries; and long, hard bursts are produced by the core collapse of massive stars that have lost their hydrogen and helium envelopes. We then discuss some important open questions about GRBs and how they might be answered. We conclude by describing the recent serendipitous discovery of an x-ray burst of exactly the kind he proposed, and the insights into core collapse supernovae and GRBs that it provided.

  1. Hardness/intensity correlations among BATSE bursts

    Science.gov (United States)

    Paciesas, William S.; Pendleton, Geoffrey N.; Kouveliotou, Chryssa; Fishman, Gerald J.; Meegan, Charles A.; Wilson, Robert B.

    1992-01-01

    Conclusions about the nature of gamma-ray bursts derived from the size-frequency distribution may be altered if a significant correlation exists between burst intensity and spectral shape. Moreover, if gamma-ray bursts have a cosmological origin, such a correlation may be expected to result from the expansion of the universe. We have performed a rudimentary search of the BATSE bursts for hardness/intensity correlations. The range of spectral shapes was determined for each burst by computing the ratio of the intensity in the range 100-300 keV to that in 55-300 keV. We find weak evidence for the existence of a correlation, the strongest effect being present when comparing the maximum hardness ratio for each burst with its maximum rate.

  2. Three types of $\\gamma$-ray bursts

    CERN Document Server

    Mukherjee, S; Babu, G J; Murtagh, F; Fraley, C; Raftery, A E; Mukherjee, Soma; Feigelson, Eric D.; Babu, Gutti Jogesh; Murtagh, Fionn; Fraley, Chris; Raftery, Adrian

    1998-01-01

    A multivariate analysis of gamma-ray burst (GRB) bulk properties is presented to discriminate between distinct classes of GRBs. Several variables representing burst duration, fluence and spectral hardness are considered. Two multivariate clustering procedures are used on a sample of 797 bursts from the Third BATSE Catalog: a nonparametric average linkage hierarchical agglomerative clustering procedure validated with Wilks' $\\Lambda^*$ and other MANOVA tests; and a parametric maximum likelihood model-based clustering procedure assuming multinormal populations calculated with the EM Algorithm and validated with the Bayesian Information Criterion. The two methods yield very similar results. The BATSE GRB population consists of three classes with the following Duration/Fluence/Spectrum bulk properties: Class I with long/bright/intermediate bursts, Class II with short/hard/faint bursts, and Class III with intermediate/intermediate/soft bursts. One outlier with poor data is also present. Classes I and II correspond...

  3. Pulse Phase Dependence of the Magnetar Bursts

    Indian Academy of Sciences (India)

    Chetana Jain; Anjan Dutta; Biswajit Paul

    2007-12-01

    We report here results from a study of X-ray bursts from 3 magnetar candidates (SGR 1806–20, SGR 1900+14 and AXP 1E 2259+586). We have searched for a pulse phase dependence of the X-ray burst rate from these sources. X-ray light curves were obtained with the Proportional Counter Array on-board the Rossi X-ray Timing Explorer during the periods of intense burst activity in these sources. On detailed analysis of the three sources, we found a very significant burst rate for all pulsar phases. However, some locations appear to produce bursts slightly more often, rendering the non-isotropic distribution. Only in the case of SGR 1900+14, there is a clear pulse phase dependence of burst rate.

  4. Ballerina - pirouettes in search of gamma bursts

    Science.gov (United States)

    Brandt, S.; Lund, N.; Pedersen, H.; Hjorth, J.; BALLERINA Collaboration

    1999-09-01

    The cosmological origin of gamma ray bursts has now been established with reasonable certainty. Many more bursts will need to be studied to establish the typical distance scale, and to map out the large diversity in properties which have been indicated by the first handful of events. We are proposing Ballerina, a small satellite to provide accurate positions and new data on the gamma-ray bursts. We anticipate a detection rate an order of magnitude larger than obtained from Beppo-SAX.

  5. United assembly algorithm for optical burst switching

    Institute of Scientific and Technical Information of China (English)

    Jinhui Yu(于金辉); Yijun Yang(杨教军); Yuehua Chen(陈月华); Ge Fan(范戈)

    2003-01-01

    Optical burst switching (OBS) is a promising optical switching technology. The burst assembly algorithm controls burst assembly, which significantly impacts performance of OBS network. This paper provides a new assembly algorithm, united assembly algorithm, which has more practicability than conventional algorithms. In addition, some factors impacting selections of parameters of this algorithm are discussed and the performance of this algorithm is studied by computer simulation.

  6. Fast Radio Burst/Gamma-Ray Burst Cosmography

    Science.gov (United States)

    Gao, He; Li, Zhuo; Zhang, Bing

    2014-06-01

    Recently, both theoretical arguments and observational evidence suggested that a small fraction of fast radio bursts (FRBs) could be associated with gamma-ray bursts (GRBs). If such FRB/GRB association systems are commonly detected in the future, the combination of dispersion measures (DM) derived from FRBs and redshifts derived from GRBs makes these systems a plausible tool to conduct cosmography. We quantify uncertainties in deriving the redshift-dependent DM_{IGM} as a function of z and test how well dark energy models can be constrained with Monte Carlo simulations. We show that with several tens of FRB/GRB systems potentially detected in a decade or so, one may reach reasonable constraints on wCDM models. When combined with Type Ia supernova (SN Ia) data, unprecedented constraints on the dark energy equation of state may be achieved, thanks to the prospects of detecting FRB/GRB systems at relatively high redshifts. The ratio between the mean value \\lt {DM_IGM} (z)\\gt and luminosity distance (D L(z)) is insensitive to dark energy models. This gives the prospect of applying SN Ia data to calibrate \\lt {DM_IGM} (z)\\gt using a relatively small sample of FRB/GRB systems, allowing a reliable constraint on the baryon inhomogeneity distribution as a function of redshift. The methodology developed in this paper can also be applied if the FRB redshifts can be measured by other means. Some caveats of putting this method into practice are also discussed.

  7. Fast radio burst/gamma-ray burst cosmography

    Energy Technology Data Exchange (ETDEWEB)

    Gao, He; Zhang, Bing [Department of Physics and Astronomy, University of Nevada Las Vegas, NV 89154 (United States); Li, Zhuo, E-mail: gaohe@physics.unlv.edu, E-mail: zhang@physics.unlv.edu, E-mail: zhuo.li@pku.edu.cn [Department of Astronomy, School of Physics, Peking University, Beijing 100871 (China)

    2014-06-20

    Recently, both theoretical arguments and observational evidence suggested that a small fraction of fast radio bursts (FRBs) could be associated with gamma-ray bursts (GRBs). If such FRB/GRB association systems are commonly detected in the future, the combination of dispersion measures (DM) derived from FRBs and redshifts derived from GRBs makes these systems a plausible tool to conduct cosmography. We quantify uncertainties in deriving the redshift-dependent DM{sub IGM} as a function of z and test how well dark energy models can be constrained with Monte Carlo simulations. We show that with several tens of FRB/GRB systems potentially detected in a decade or so, one may reach reasonable constraints on wCDM models. When combined with Type Ia supernova (SN Ia) data, unprecedented constraints on the dark energy equation of state may be achieved, thanks to the prospects of detecting FRB/GRB systems at relatively high redshifts. The ratio between the mean value and luminosity distance (D {sub L}(z)) is insensitive to dark energy models. This gives the prospect of applying SN Ia data to calibrate using a relatively small sample of FRB/GRB systems, allowing a reliable constraint on the baryon inhomogeneity distribution as a function of redshift. The methodology developed in this paper can also be applied if the FRB redshifts can be measured by other means. Some caveats of putting this method into practice are also discussed.

  8. Elimination of manganese(II,III) oxidation in Pseudomonas putida GB-1 by a double knockout of two putative multicopper oxidase genes.

    Science.gov (United States)

    Geszvain, Kati; McCarthy, James K; Tebo, Bradley M

    2013-01-01

    Bacterial manganese(II) oxidation impacts the redox cycling of Mn, other elements, and compounds in the environment; therefore, it is important to understand the mechanisms of and enzymes responsible for Mn(II) oxidation. In several Mn(II)-oxidizing organisms, the identified Mn(II) oxidase belongs to either the multicopper oxidase (MCO) or the heme peroxidase family of proteins. However, the identity of the oxidase in Pseudomonas putida GB-1 has long remained unknown. To identify the P. putida GB-1 oxidase, we searched its genome and found several homologues of known or suspected Mn(II) oxidase-encoding genes (mnxG, mofA, moxA, and mopA). To narrow this list, we assumed that the Mn(II) oxidase gene would be conserved among Mn(II)-oxidizing pseudomonads but not in nonoxidizers and performed a genome comparison to 11 Pseudomonas species. We further assumed that the oxidase gene would be regulated by MnxR, a transcription factor required for Mn(II) oxidation. Two loci met all these criteria: PputGB1_2447, which encodes an MCO homologous to MnxG, and PputGB1_2665, which encodes an MCO with very low homology to MofA. In-frame deletions of each locus resulted in strains that retained some ability to oxidize Mn(II) or Mn(III); loss of oxidation was attained only upon deletion of both genes. These results suggest that PputGB1_2447 and PputGB1_2665 encode two MCOs that are independently capable of oxidizing both Mn(II) and Mn(III). The purpose of this redundancy is unclear; however, differences in oxidation phenotype for the single mutants suggest specialization in function for the two enzymes.

  9. Vanillyl-alcohol oxidase, a tasteful biocatalyst

    NARCIS (Netherlands)

    Heuvel, Robert H.H. van den; Fraaije, Marco W.; Mattevi, Andrea; Laane, Colja; Berkel, Willem J.H. van

    2001-01-01

    The covalent flavoenzyme vanillyl-alcohol oxidase (VAO) is a versatile biocatalyst. It converts a wide range of phenolic compounds by catalysing oxidation, deamination, demethylation, dehydrogenation and hydroxylation reactions. The production of natural vanillin, 4-hydroxybenzaldehyde, coniferyl al

  10. Two classes of gamma-ray bursts

    CERN Document Server

    Katz, J I

    1995-01-01

    Data from the 3B Catalogue suggest that short and long GRB are the results of different classes of events, rather than different parameter values within a single class: Short bursts have harder spectra in the BATSE bands, but chiefly long bursts are detected at photon energies over 1 MeV, implying that their hard photons are radiated by a process not found in short bursts. The values of \\langle V/V_{max} \\rangle for short and long bursts differ by 4.3 \\sigma, implying different spatial distributions. Only the soft gamma-ray radiation mechanisms are the same in both classes.

  11. Bubble burst as jamming phase transition

    CERN Document Server

    Nishinari, Katsuhiro; Saito, Yukiko Umeno; Watanabe, Tsutomu

    2010-01-01

    Recently research on bubble and its burst attract much interest of researchers in various field such as economics and physics. Economists have been regarding bubble as a disorder in prices. However, this research strategy has overlooked an importance of the volume of transactions. In this paper, we have proposed a bubble burst model by focusing the transactions incorporating a traffic model that represents spontaneous traffic jam. We find that the phenomenon of bubble burst shares many similar properties with traffic jam formation by comparing data taken from US housing market. Our result suggests that the transaction could be a driving force of bursting phenomenon.

  12. Phosphatase and Tensin Homologue: Novel Regulation by Developmental Signaling

    Directory of Open Access Journals (Sweden)

    Travis J. Jerde

    2015-01-01

    Full Text Available Phosphatase and tensin homologue (PTEN is a critical cell endogenous inhibitor of phosphoinositide signaling in mammalian cells. PTEN dephosphorylates phosphoinositide trisphosphate (PIP3, and by so doing PTEN has the function of negative regulation of Akt, thereby inhibiting this key intracellular signal transduction pathway. In numerous cell types, PTEN loss-of-function mutations result in unopposed Akt signaling, producing numerous effects on cells. Numerous reports exist regarding mutations in PTEN leading to unregulated Akt and human disease, most notably cancer. However, less is commonly known about nonmutational regulation of PTEN. This review focuses on an emerging literature on the regulation of PTEN at the transcriptional, posttranscriptional, translational, and posttranslational levels. Specifically, a focus is placed on the role developmental signaling pathways play in PTEN regulation; this includes insulin-like growth factor, NOTCH, transforming growth factor, bone morphogenetic protein, wnt, and hedgehog signaling. The regulation of PTEN by developmental mediators affects critical biological processes including neuronal and organ development, stem cell maintenance, cell cycle regulation, inflammation, response to hypoxia, repair and recovery, and cell death and survival. Perturbations of PTEN regulation consequently lead to human diseases such as cancer, chronic inflammatory syndromes, developmental abnormalities, diabetes, and neurodegeneration.

  13. Characterization of Major Surface Protease Homologues of Trypanosoma congolense

    Directory of Open Access Journals (Sweden)

    Veronica Marcoux

    2010-01-01

    Full Text Available Trypanosomes encode a family of proteins known as Major Surface Metalloproteases (MSPs. We have identified six putative MSPs encoded within the partially sequenced T. congolense genome. Phylogenic analysis indicates that T. congolense MSPs belong to five subfamilies that are conserved among African trypanosome species. Molecular modeling, based on the known structure of Leishmania Major GP63, reveals subfamily-specific structural variations around the putative active site despite conservation of overall structure, suggesting that each MSP subfamily has evolved to recognize distinct substrates. We have cloned and purified a protein encoding the amino-terminal domain of the T. congolense homologue TcoMSP-D (most closely related to Leishmania GP63. We detect TcoMSP-D in the serum of T. congolense-infected mice. Mice immunized with the amino-terminal domain of TcoMSP-D generate a persisting IgG1 antibody response. Surprisingly, a low-dose challenge of immunized mice with T. congolense significantly increases susceptibility to infection, indicating that immunity to TcoMSP-D is a factor affecting virulence.

  14. Galactose oxidase nanoaggregates: Preparation and characterization

    OpenAIRE

    Mamta Sharma; Minakshi Sharma

    2016-01-01

    Galctose oxidase nanoaggregates have been prepared by chemical desolvation method involving the crosslinkng agent glutaraldehyde. These enzyme nanoagregates have been characterized by transmission electron microscopy(TEM), UV visible spectroscopy, Fourier transform infrared spectroscopy (FTIR). TEM reveals the globular spherical nanostructured form upto the range of 20nm. UV visible spectroscopy of galactose oxidase nanoaggregates shows maximum absorption peak at 237nm. FTIR spectra obtaine...

  15. Analysis of historic bursts and burst detection in water supply areas of different size

    NARCIS (Netherlands)

    Bakker, M.; Trietsch, E.A.; Vreeburg, J.H.G.; Rietveld, L.C.

    2014-01-01

    Pipe bursts in water distribution networks lead to water losses and a risk of damaging the urban environment. We studied hydraulic data and customer contact records of 44 real bursts for a better understanding of the phenomena. We found that most bursts were reported to the water company shortly aft

  16. A Phaseolus vulgaris NADPH oxidase gene is required for root infection by Rhizobia.

    Science.gov (United States)

    Montiel, Jesús; Nava, Noreide; Cárdenas, Luis; Sánchez-López, Rosana; Arthikala, Manoj-Kumar; Santana, Olivia; Sánchez, Federico; Quinto, Carmen

    2012-10-01

    Plant NADPH oxidases [respiratory burst oxidase homologs (RBOHs)] have emerged as key players in the regulation of plant-pathogen interactions. Nonetheless, their role in mutualistic associations, such as the rhizobia-legume symbiosis, is poorly understood. In this work, nine members of the Phaseolus vulgaris Rboh gene family were identified. The transcript of one of these, PvRbohB, accumulated abundantly in shoots, roots and nodules. PvRbohB promoter activity was detected in meristematic regions of P. vulgaris roots, as well as during infection thread (IT) progression and nodule development. RNA interference (RNAi)-mediated PvRbohB down-regulation in transgenic roots reduced reactive oxygen species (ROS) production and lateral root density, and greatly impaired nodulation. Microscopy analysis revealed that progression of the ITs was impeded at the base of root hairs in PvRbohB-RNAi roots. Furthermore, the few nodules that formed in PvRbohB-down-regulated roots displayed abnormally wide ITs and reduced nitrogen fixation. These findings indicate that this common bean NADPH oxidase is crucial for successful rhizobial colonization and probably maintains proper IT growth and shape.

  17. Purification and characterization of a lipid thiobis ester from human neutrophil cytosol that reversibly deactivates the O2- -generating NADPH oxidase.

    Science.gov (United States)

    Eklund, E A; Gabig, T G

    1990-05-25

    Intact neutrophils possess a cellular mechanism that efficiently deactivates the microbicidal O2-generating NADPH oxidase during the respiratory burst (Akard, L. P., English, D., and Gabig, T. G. (1988) Blood 72, 322-327). The present studies directed at identifying the molecular mechanism(s) involved in NADPH oxidase deactivation showed that a heat- and trypsin-insensitive species in the cytosolic fraction from normal unstimulated neutrophils was capable of deactivating the membrane-associated NADPH oxidase isolated from opsonized zymosan- or phorbol 12-myristate 13-acetate-stimulated neutrophils. This cytosolic species also deactivated the cell-free-activated oxidase. Deactivation by this cytosolic species occurred in the absence of NADPH-dependent catalytic turnover and was reversible, since NADPH oxidase activity could be subsequently reactivated in the cell-free system. The sedimentable particulate fraction from unstimulated neutrophils did not demonstrate deactivator activity. Deactivator activity was demonstrated in the neutral lipid fraction of neutrophil cytosol extracted with chloroform:methanol. Following complete purification of cytosolic deactivator activity by thin layer chromatography and reversed phase high performance liquid chromatography, the deactivator species was shown to be a lipid thiobis ester compound by mass spectroscopy. Cellular metabolism of this compound in human neutrophils may reveal a unique mechanism for enzymatic control of the NADPH oxidase system and thereby play an important role in regulation of the inflammatory response.

  18. Magnetars and Gamma Ray Bursts

    CERN Document Server

    Bucciantini, N

    2012-01-01

    In the last few years, evidences for a long-lived and sustained engine in Gamma Ray Bursts (GRBs) have increased the attention to the so called millisecond-magnetar model, as a competitive alternative to the standard collapsar scenario. I will review here the key aspects of the {\\it millisecond magnetar} model for Long Duration Gamma Ray Bursts (LGRBs). I will briefly describe what constraints, present observations put on any engine model, both in term of energetic, outflow properties, and the relation with the associated Supernova (SN). For each of these I will show how the millisecond magnetar model satisfies the requirements, what are the limits of the model, how can it be further tested, and what observations might be used to discriminate against it. I will also discuss numerical results that show the importance of the confinement by the progenitor star in explaining the formation of a collimated outflow, how a detailed model for the evolution of the central engine can be built, and show that a wide varie...

  19. NADPH Oxidase-Dependent Superoxide Production in Plant Reproductive Tissues.

    Science.gov (United States)

    Jiménez-Quesada, María J; Traverso, José Á; Alché, Juan de Dios

    2016-01-01

    In the life cycle of a flowering plant, the male gametophyte (pollen grain) produced in the anther reaches the stigmatic surface and initiates the pollen-pistil interaction, an important step in plant reproduction, which ultimately leads to the delivery of two sperm cells to the female gametophyte (embryo sac) inside the ovule. The pollen tube undergoes a strictly apical expansion characterized by a high growth rate, whose targeting should be tightly regulated. A continuous exchange of signals therefore takes place between the haploid pollen and diploid tissue of the pistil until fertilization. In compatible interactions, theses processes result in double fertilization to form a zygote (2n) and the triploid endosperm. Among the large number of signaling mechanisms involved, the redox network appears to be particularly important. Respiratory burst oxidase homologs (Rbohs) are superoxide-producing enzymes involved in a broad range of processes in plant physiology. In this study, we review the latest findings on understanding Rboh activity in sexual plant reproduction, with a particular focus on the male gametophyte from the anther development stages to the crowning point of fertilization. Rboh isoforms have been identified in both the male and female gametophyte and have proven to be tightly regulated. Their role at crucial points such as proper growth of pollen tube, self-incompatibility response and eventual fertilization is discussed.

  20. Role for membrane fusion in the activation of the respiratory burst in human neutrophils

    Energy Technology Data Exchange (ETDEWEB)

    Manara-Shediac, F.S.

    1986-01-01

    Components of the respiratory burst oxidase reside in intracellular membranes of the tertiary granules in resting cells, yet oxidase activity in the activated cells occurs at the neutrophil surface. The role of degranulation in activation of the neutrophil respiratory burst was therefore investigated. Surface labeling experiments were carried out on resting and activated neutrophils using three impermeant labeling methods. Activated neutrophils labeled with (/sup 35/S) diazobenzene sulfonic acid showed a fourfold higher specific radioactivity than resting neutrophils. Similar results were obtained with the pyridoxal phosphate/borotritide labeling method. On the other hand, little difference in labeling was seen using the periodate/borotritide method which detects the carbohydrate of glycoproteins. These results suggest that either a large amount of protein, or a highly reactive protein becomes exposed upon activation. Resting, activated, and enucleated cells were labeled using the (/sup 125/I) lactoperoxidase method, then subjected to polyacrylamide gel electrophoresis. Autoradiograms of these gels showed that two proteins of about 75 and 45 kD, are labeled at the external surface of enucleated and activated cells but not resting cells.

  1. Identification and analysis of cation channel homologues in human pathogenic fungi.

    Directory of Open Access Journals (Sweden)

    David L Prole

    Full Text Available Fungi are major causes of human, animal and plant disease. Human fungal infections can be fatal, but there are limited options for therapy, and resistance to commonly used anti-fungal drugs is widespread. The genomes of many fungi have recently been sequenced, allowing identification of proteins that may become targets for novel therapies. We examined the genomes of human fungal pathogens for genes encoding homologues of cation channels, which are prominent drug targets. Many of the fungal genomes examined contain genes encoding homologues of potassium (K(+, calcium (Ca(2+ and transient receptor potential (Trp channels, but not sodium (Na(+ channels or ligand-gated channels. Some fungal genomes contain multiple genes encoding homologues of K(+ and Trp channel subunits, and genes encoding novel homologues of voltage-gated K(v channel subunits are found in Cryptococcus spp. Only a single gene encoding a homologue of a plasma membrane Ca(2+ channel was identified in the genome of each pathogenic fungus examined. These homologues are similar to the Cch1 Ca(2+ channel of Saccharomyces cerevisiae. The genomes of Aspergillus spp. and Cryptococcus spp., but not those of S. cerevisiae or the other pathogenic fungi examined, also encode homologues of the mitochondrial Ca(2+ uniporter (MCU. In contrast to humans, which express many K(+, Ca(2+ and Trp channels, the genomes of pathogenic fungi encode only very small numbers of K(+, Ca(2+ and Trp channel homologues. Furthermore, the sequences of fungal K(+, Ca(2+, Trp and MCU channels differ from those of human channels in regions that suggest differences in regulation and susceptibility to drugs.

  2. Coding Bounds for Multiple Phased-Burst Correction and Single Burst Correction Codes

    CERN Document Server

    Fong, Wai Han

    2011-01-01

    In this paper, two upper bounds on the achievable code rate of linear block codes for multiple phased-burst correction (MPBC) are presented. One bound is constrained to a maximum correctable cyclic burst length within every subblock, or equivalently a constraint on the minimum error free length or gap within every phased-burst. This bound, when reduced to the special case of a bound for single burst correction (SBC), is shown to be the Abramson bound when the cyclic burst length is less than half the block length. The second MPBC bound is developed without the minimum error free gap constraint and is used as a comparison to the first bound.

  3. Coupling and noise induced spiking-bursting transition in a parabolic bursting model.

    Science.gov (United States)

    Ji, Lin; Zhang, Jia; Lang, Xiufeng; Zhang, Xiuhui

    2013-03-01

    The transition from tonic spiking to bursting is an important dynamic process that carry physiologically relevant information. In this work, coupling and noise induced spiking-bursting transition is investigated in a parabolic bursting model with specific discussion on their cooperation effects. Fast/slow analysis shows that weak coupling may help to induce the bursting by changing the geometric property of the fast subsystem so that the original unstable periodical solution are stabilized. It turned out that noise can play the similar stabilization role and induce bursting at appropriate moderate intensity. However, their cooperation may either strengthen or weaken the overall effect depending on the choice of noise level.

  4. Using temporal bursts for query modeling

    NARCIS (Netherlands)

    Peetz, M.H.; Meij, E.; de Rijke, M.

    2014-01-01

    We present an approach to query modeling that leverages the temporal distribution of documents in an initially retrieved set of documents. In news-related document collections such distributions tend to exhibit bursts. Here, we define a burst to be a time period where unusually many documents are pu

  5. Photospheric radius expansion during magnetar bursts

    NARCIS (Netherlands)

    A.L. Watts; C. Kouveliotou; A.J. van der Horst; E. Göğüş; Y. Kaneko; M. van der Klis; R.A.M.J. Wijers; A.K. Harding; M.G. Baring

    2010-01-01

    On 2008 August 24 the new magnetar SGR 0501+4516 (discovered by Swift) emitted a bright burst with a pronounced double-peaked structure in hard X-rays, reminiscent of the double-peaked temporal structure seen in some bright thermonuclear bursts on accreting neutron stars. In the latter case this is

  6. Astronomy: Radio burst caught red-handed

    Science.gov (United States)

    Falcke, Heino

    2017-01-01

    For almost a decade, astronomers have observed intense bursts of radio waves from the distant cosmos whose origins were unknown. The source of one such burst has now been identified, but this has only deepened the mystery. See Letter p.58

  7. [Patterns of PCDD/Fs, PCBs and PCNs homologues in fly ash from cement kilns].

    Science.gov (United States)

    Zhang, Jing; Ni, Yu-Wen; Zhang, Hai-Jun; Zhang, Xue-Ping; Zhang, Qing; Chen, Ji-Ping

    2009-02-15

    The concentrations and toxic equivalent (TEQ) values of PCDD/Fs, PCBs and PCNs in fly ash collected from three types of cement kilns (vertical shaft kiln, wet-process rotary kiln and dry-process rotary kiln) and two types of waste incinerators were determined, and the patterns of homologues and congeners were compared. The results showed that the total TEQ of PCDD/Fs, PCBs and PCNs in cement kiln fly ash, which were in the range of 4.0-62, 0.069-3.9 and 0.47-2.8 ng x kg(-1) respectively, were much lower than that of fly ash from waste incinerators. In cement kiln fly ash, the predominating PCDD/Fs homologues were TCDFs, and the chief 2, 3, 7, 8-PCDD/Fs congeners were OCDD, 2, 3, 7, 8-TCDF and 1, 2, 3, 4, 6, 7, 8-HpCDF. The patterns of PCBs homologues in cement kiln fly ash were similar to those of waste incinerators in which TeCB were predominating homologues. PCB77, PCB105, PCB118 were at higher concentrations than other co-polar PCBs. Different types of cement kiln fly ash presented similar PCNs homologue patterns. The predominant homologues were TeCN, whereas OcCN were not detected. PCN 66/67 which has dioxin like toxity was the most abundant congener in all fly ash.

  8. Phosphatase and tensin homologue deleted on chromosome 10

    Directory of Open Access Journals (Sweden)

    Imran Haruna Abdulkareem

    2013-01-01

    Full Text Available Phosphatase and tensin homologue deleted on chromosome 10 (PTEN is a tumor suppressor gene deleted or mutated in many human cancers such as glioblastoma, spinal tumors, prostate, bladder, adrenals, thyroid, breast, endometrium, and colon cancers. They result from loss of heterozygosity (LOH for the PTEN gene on chromosome 10q23. Previous studies reported that various drugs, chemicals, and foods can up-regulate PTEN mRNA and protein expression in different cell lines, and they may be useful in the future prevention and/or treatment of these cancers. PTEN has also been observed to have prognostic significance and is gradually being accepted as an independent prognostic factor. This will help in monitoring disease progression and/or recurrence, with a view to improving treatment outcomes and reducing the associated morbidity and mortality from these cancers. Neprilysin (NEP is a zinc-dependent metallopeptidase that cleaves and inactivates some biologically active peptides thus switching off signal transduction at the cell surface. Decreased NEP expression in many cancers has been reported. NEP can form a complex with PTEN and enhance PTEN recruitment to the plasma membrane as well as stabilize its phosphatase activity. MicroRNA-21 (miR-21 post-transcriptionally down-regulates the expression of PTEN and stimulates growth and invasion in non-small cell lung cancer (NSCLC (lung Ca, suggesting that this may be a potential therapeutic target in the future treatment of NSCLC. PTEN is a tumor suppressor gene associated with many human cancers. This has diagnostic, therapeutic, and prognostic significance in the management of many human cancers, and may be a target for new drug development in the future.

  9. The human homologue of macaque area V6A.

    Science.gov (United States)

    Pitzalis, S; Sereno, M I; Committeri, G; Fattori, P; Galati, G; Tosoni, A; Galletti, C

    2013-11-15

    In macaque monkeys, V6A is a visuomotor area located in the anterior bank of the POs, dorsal and anterior to retinotopically-organized extrastriate area V6 (Galletti et al., 1996). Unlike V6, V6A represents both contra- and ipsilateral visual fields and is broadly retinotopically organized (Galletti et al., 1999b). The contralateral lower visual field is over-represented in V6A. The central 20°-30° of the visual field is mainly represented dorsally (V6Ad) and the periphery ventrally (V6Av), at the border with V6. Both sectors of area V6A contain arm movement-related cells, active during spatially-directed reaching movements (Gamberini et al., 2011). In humans, we previously mapped the retinotopic organization of area V6 (Pitzalis et al., 2006). Here, using phase-encoded fMRI, cortical surface-based analysis and wide-field retinotopic mapping, we define a new cortical region that borders V6 anteriorly and shows a clear over-representation of the contralateral lower visual field and the periphery. As with macaque V6A, the eccentricity increases moving ventrally within the area. The new region contains a non-mirror-image representation of the visual field. Functional mapping reveals that, as in macaque V6A, the new region, but not the nearby area V6, responds during finger pointing and reaching movements. Based on similarity in position, retinotopic properties, functional organization and relationship with the neighboring extrastriate visual areas, we propose that the new cortical region is the human homologue of macaque area V6A.

  10. Antidepressant Binding Site in a Bacterial Homologue of Neurotransmitter Transporters

    Energy Technology Data Exchange (ETDEWEB)

    Singh,S.; Yamashita, A.; Gouaux, E.

    2007-01-01

    Sodium-coupled transporters are ubiquitous pumps that harness pre-existing sodium gradients to catalyse the thermodynamically unfavourable uptake of essential nutrients, neurotransmitters and inorganic ions across the lipid bilayer. Dysfunction of these integral membrane proteins has been implicated in glucose/galactose malabsorption, congenital hypothyroidism, Bartter's syndrome, epilepsy, depression, autism and obsessive-compulsive disorder. Sodium-coupled transporters are blocked by a number of therapeutically important compounds, including diuretics, anticonvulsants and antidepressants, many of which have also become indispensable tools in biochemical experiments designed to probe antagonist binding sites and to elucidate transport mechanisms. Steady-state kinetic data have revealed that both competitive and noncompetitive modes of inhibition exist. Antagonist dissociation experiments on the serotonin transporter (SERT) have also unveiled the existence of a low-affinity allosteric site that slows the dissociation of inhibitors from a separate high-affinity site. Despite these strides, atomic-level insights into inhibitor action have remained elusive. Here we screen a panel of molecules for their ability to inhibit LeuT, a prokaryotic homologue of mammalian neurotransmitter sodium symporters, and show that the tricyclic antidepressant (TCA) clomipramine noncompetitively inhibits substrate uptake. Cocrystal structures show that clomipramine, along with two other TCAs, binds in an extracellular-facing vestibule about 11 {angstrom} above the substrate and two sodium ions, apparently stabilizing the extracellular gate in a closed conformation. Off-rate assays establish that clomipramine reduces the rate at which leucine dissociates from LeuT and reinforce our contention that this TCA inhibits LeuT by slowing substrate release. Our results represent a molecular view into noncompetitive inhibition of a sodium-coupled transporter and define principles for the

  11. IMAGING DIAGNOSIS OF THORACOLUMBAR BURST FRACTURES

    Institute of Scientific and Technical Information of China (English)

    Li-yang Dai

    2004-01-01

    Objective To review imaging use in the diagnosis ofthoracolumbar burst fractures and to determine the diagnostic value of different imaging methods.Methods One hundred and fourteen patients with 120 thoracolumbar burst fractures were retrospectively reviewed. Plain radiographs were available in all cases; CT scans and MRI were obtained in 96 and 74 cases, respectively.Results A total of 27 burst fractures were misdiagnosed as other types of fractures on radiographs alone, and accounted for 22.5% of all fractures. The results indicated that plain radiographs often fail to delineate the pathological features of thoracolumbar burst fractures, leading to delay in diagnosis.Conclusion In regard to thoracolumbar injury diagnosis, burst fractures should be differentiated from compression fractures. CT should be routinely indicated and MRI examination, when necessary, may be simultaneously considered.

  12. Bright 30 THz Impulsive Solar Bursts

    CERN Document Server

    Kaufmann, P; Marcon, R; Kudaka, A S; Cabezas, D P; Cassiano, M M; Francile, C; Fernandes, L O T; Ramirez, R F Hidalgo; Luoni, M; Marun, A; Pereyra, P; de Souza, R V

    2015-01-01

    Impulsive 30 THz continuum bursts have been recently observed in solar flares, utilizing small telescopes with a unique and relatively simple optical setup concept. The most intense burst was observed together with a GOES X2 class event on October 27, 2014, also detected at two sub-THz frequencies, RHESSI X-rays and SDO/HMI and EUV. It exhibits strikingly good correlation in time and in space with white light flare emission. It is likely that this association may prove to be very common. All three 30 THz events recently observed exhibited intense fluxes in the range of 104 solar flux units, considerably larger than those measured for the same events at microwave and sub-mm wavelengths. The 30 THz burst emission might be part of the same spectral burst component found at sub-THz frequencies. The 30 THz solar bursts open a promising new window for the study of flares at their origin

  13. FRBCAT: The Fast Radio Burst Catalogue

    Science.gov (United States)

    Petroff, E.; Barr, E. D.; Jameson, A.; Keane, E. F.; Bailes, M.; Kramer, M.; Morello, V.; Tabbara, D.; van Straten, W.

    2016-09-01

    Here, we present a catalogue of known Fast Radio Burst sources in the form of an online catalogue, FRBCAT. The catalogue includes information about the instrumentation used for the observations for each detected burst, the measured quantities from each observation, and model-dependent quantities derived from observed quantities. To aid in consistent comparisons of burst properties such as width and signal-to-noise ratios, we have re-processed all the bursts for which we have access to the raw data, with software which we make available. The originally derived properties are also listed for comparison. The catalogue is hosted online as a Mysql database which can also be downloaded in tabular or plain text format for off-line use. This database will be maintained for use by the community for studies of the Fast Radio Burst population as it grows.

  14. Bursting neurons and ultrasound avoidance in crickets.

    Science.gov (United States)

    Marsat, Gary; Pollack, Gerald S

    2012-01-01

    Decision making in invertebrates often relies on simple neural circuits composed of only a few identified neurons. The relative simplicity of these circuits makes it possible to identify the key computation and neural properties underlying decisions. In this review, we summarize recent research on the neural basis of ultrasound avoidance in crickets, a response that allows escape from echolocating bats. The key neural property shaping behavioral output is high-frequency bursting of an identified interneuron, AN2, which carries information about ultrasound stimuli from receptor neurons to the brain. AN2's spike train consists of clusters of spikes - bursts - that may be interspersed with isolated, non-burst spikes. AN2 firing is necessary and sufficient to trigger avoidance steering but only high-rate firing, such as occurs in bursts, evokes this response. AN2 bursts are therefore at the core of the computation involved in deciding whether or not to steer away from ultrasound. Bursts in AN2 are triggered by synaptic input from nearly synchronous bursts in ultrasound receptors. Thus the population response at the very first stage of sensory processing - the auditory receptor - already differentiates the features of the stimulus that will trigger a behavioral response from those that will not. Adaptation, both intrinsic to AN2 and within ultrasound receptors, scales the burst-generating features according to the stimulus statistics, thus filtering out background noise and ensuring that bursts occur selectively in response to salient peaks in ultrasound intensity. Furthermore AN2's sensitivity to ultrasound varies adaptively with predation pressure, through both developmental and evolutionary mechanisms. We discuss how this key relationship between bursting and the triggering of avoidance behavior is also observed in other invertebrate systems such as the avoidance of looming visual stimuli in locusts or heat avoidance in beetles.

  15. Methods of rock burst prediction

    Energy Technology Data Exchange (ETDEWEB)

    Genkin, V.A.; Minin, Yu.Ya.; Morozov, G.D.; Proskuryakov, V.M.; Cmirnov, V.A.

    1979-07-01

    Some methods of predicting rock bursts in underground coal and iron ore mines are evaluated: using BP-18 indenters and the MGD indenter with automatic recording; seismic method consisting in measuring the speed of shock waves travelling through various layers (apparatus SB-20 is designed for use in coal mines); electrometric method (measuring resistance between two electrodes when electric currents flow through coal and rocks). The design of the AEhSSh-1 measuring instrument, used in the electrometric method in coal mines is also described. Each of the methods is described and mathematical fomulae used as their theoretical basis are presented. The calculating process is explained and brief information on the design and use of the measuring instrument is given. The methods are evaluated from the viewpoint of precision. (In Russian)

  16. Hypoxia selectively inhibits respiratory burst activity and killing of Staphylococcus aureus in human neutrophils.

    Science.gov (United States)

    McGovern, Naomi N; Cowburn, Andrew S; Porter, Linsey; Walmsley, Sarah R; Summers, Charlotte; Thompson, Alfred A R; Anwar, Sadia; Willcocks, Lisa C; Whyte, Moira K B; Condliffe, Alison M; Chilvers, Edwin R

    2011-01-01

    Neutrophils play a central role in the innate immune response and a critical role in bacterial killing. Most studies of neutrophil function have been conducted under conditions of ambient oxygen, but inflamed sites where neutrophils operate may be extremely hypoxic. Previous studies indicate that neutrophils sense and respond to hypoxia via the ubiquitous prolyl hydroxylase/hypoxia-inducible factor pathway and that this can signal for enhanced survival. In the current study, human neutrophils were shown to upregulate hypoxia-inducible factor (HIF)-1α-dependent gene expression under hypoxic incubation conditions (3 kPa), with a consequent substantial delay in the onset of apoptosis. Despite this, polarization and chemotactic responsiveness to IL-8 and fMLP were entirely unaffected by hypoxia. Similarly, hypoxia did not diminish the ability of neutrophils to phagocytose serum-opsonized heat-killed streptococci. Of the secretory functions examined, IL-8 generation was preserved and elastase release was enhanced by hypoxia. Hypoxia did, however, cause a major reduction in respiratory burst activity induced both by the soluble agonist fMLP and by ingestion of opsonized zymosan, without affecting expression of the NADPH oxidase subunits. Critically, this reduction in respiratory burst activity under hypoxia was associated with a significant defect in the killing of Staphylococcus aureus. In contrast, killing of Escherichia coli, which is predominantly oxidase independent, was fully preserved under hypoxia. In conclusion, these studies suggest that although the NADPH oxidase-dependent bacterial killing mechanism may be compromised by hypoxia, neutrophils overall appear extremely well adapted to operate successfully under severely hypoxic conditions.

  17. Influenza infection suppresses NADPH oxidase-dependent phagocytic bacterial clearance and enhances susceptibility to secondary MRSA infection

    Science.gov (United States)

    Sun, Keer; Metzger, Dennis W.

    2014-01-01

    Methicillin-resistant S. aureus (MRSA) has emerged as a leading contributor to mortality during recent influenza pandemics. The mechanism for this influenza-induced susceptibility to secondary S. aureus infection is poorly understood. Here we show that innate antibacterial immunity was significantly suppressed during the recovery stage of influenza infection, despite the fact that MRSA super-infection had no significant effect on viral burdens. Compared to mice infected with bacteria alone, post-influenza MRSA infected mice exhibited impaired bacterial clearance, which was not due to defective phagocyte recruitment, but rather coincided with reduced intracellular reactive oxygen species (ROS) levels in alveolar macrophages and neutrophils. NADPH oxidase is responsible for ROS production during phagocytic bacterial killing, a process also known as oxidative burst. We found that gp91phox-containing NADPH oxidase activity in macrophages and neutrophils was essential for optimal bacterial clearance during respiratory MRSA infections. In contrast to WT animals, gp91phox−/− mice exhibited similar defects in MRSA clearance before and after influenza infection. Using gp91phox+/− mosaic mice, we further demonstrate that influenza infection inhibits a cell-intrinsic contribution of NADPH oxidase to phagocyte bactericidal activity. Together, our results establish that influenza infection suppresses NADPH oxidase-dependent bacterial clearance and leads to susceptibility to secondary MRSA infection. PMID:24563256

  18. Observing a Burst with Sunglasses

    Science.gov (United States)

    2003-11-01

    Unique Five-Week VLT Study of the Polarisation of a Gamma-Ray Burst Afterglow "Gamma-ray bursts (GRBs)" are certainly amongst the most dramatic events known in astrophysics. These short flashes of energetic gamma-rays, first detected in the late 1960's by military satellites, last from less than one second to several minutes. GRBs have been found to be situated at extremely large ("cosmological") distances. The energy released in a few seconds during such an event is larger than that of the Sun during its entire lifetime of more than 10,000 million years. The GRBs are indeed the most powerful events since the Big Bang known in the Universe, cf. ESO PR 08/99 and ESO PR 20/00. During the past years circumstantial evidence has mounted that GRBs signal the collapse of extremely massive stars, the so-called hypernovae. This was finally demonstrated some months ago when astronomers, using the FORS instrument on ESO's Very Large Telescope (VLT), documented in unprecedented detail the changes in the spectrum of the light source ("the optical afterglow") of the gamma-ray burst GRB 030329 (cf. ESO PR 16/03). A conclusive and direct link between cosmological gamma-ray bursts and explosions of very massive stars was provided on this occasion. Gamma-Ray Burst GRB 030329 was discovered on March 29, 2003 by NASA's High Energy Transient Explorer spacecraft. Follow-up observations with the UVES spectrograph at the 8.2-m VLT KUEYEN telescope at the Paranal Observatory (Chile) showed the burst to have a redshift of 0.1685 [1]. This corresponds to a distance of about 2,650 million light-years, making GRB 030329 the second-nearest long-duration GRB ever detected. The proximity of GRB 030329 resulted in very bright afterglow emission, permitting the most extensive follow-up observations of any afterglow to date. A team of astronomers [2] led by Jochen Greiner of the Max-Planck-Institut für extraterrestrische Physik (Germany) decided to make use of this unique opportunity to study the

  19. Vanillin suppresses Kupffer cell-related colloidal carbon-induced respiratory burst activity in isolated perfused rat liver: anti-inflammatory implications.

    Science.gov (United States)

    Galgani, José E; Núñez, Bárbara; Videla, Luis A

    2012-12-01

    The inhibition of NADPH oxidase has become a potential therapeutic target for oxidative stress-related diseases. We investigated whether vanillin modifies hepatic O(2) consumption associated with Kupffer cell functioning. The influence of vanillin on Kupffer cell functioning was studied in isolated perfused rat liver by colloidal carbon (CC) infusion (0.5 mg ml(-1)), concomitantly with sinusoidal efflux of lactate dehydrogenase (LDH) as an organ viability parameter. CC infusion increased the rate of O(2) consumption of the liver above basal values, an effect that represents the respiratory burst activity of Kupffer cells. However, CC-dependent respiratory burst activity was suppressed by previous infusion of 2 mM vanillin. Vanillin did not affect the liver CC uptake rate and liver sinusoidal efflux of LDH efflux. These findings, elicited by vanillin, were reproduced by the well-established NADPH oxidase inhibitor apocynin. In conclusion, vanillin suppresses the respiratory burst activity of Kupffer cells as assessed in intact liver, which may be associated with the inhibition of macrophage NADPH oxidase activity. Such a finding may have relevance in conditions underlying Kupffer cell-dependent up-regulation of the expression and release of pro-inflammatory mediators by redox-dependent mechanisms.

  20. New insights into the regulation of NADPH oxidase dependent reactive oxygen species signaling during the plant immune response

    OpenAIRE

    2015-01-01

    Las NADPH oxidasas de plantas, denominadas “respiratory burst oxidase homologues” (RBOHs), producen especies reactivas del oxígeno (ROS) que median un amplio rango de funciones. En la célula vegetal, el ajuste preciso de la producción de ROS aporta la especificidad de señal para generar una respuesta apropiada ante las amenazas ambientales. RbohD y RbohF, dos de los diez genes Rboh de Arabidopsis, son pleiotrópicos y median diversos procesos fisiológicos en respuesta a patógenos. El control e...

  1. Observational properties of decameter type IV bursts

    Science.gov (United States)

    Melnik, Valentin; Brazhenko, Anatoly; Rucker, Helmut; Konovalenko, Alexander; Briand, Carine; Dorovskyy, Vladimir; Zarka, Philippe; Frantzusenko, Anatoly; Panchenko, Michael; Poedts, Stefan; Zaqarashvili, Teimuraz; Shergelashvili, Bidzina

    2013-04-01

    Oscillations of decameter type IV bursts were registered during observations of solar radio emission by UTR-2, URAN-2 and NDA in 2011-2012. Large majority of these bursts were accompanied by coronal mass ejections (CMEs), which were observed by SOHO and STEREO in the visible light. Only in some cases decameter type IV bursts were not associated with CMEs. The largest periods of oscillations P were some tens of minutes. There were some modes of long periods of oscillations simultaneously. Periods of oscillations in flux and in polarization profiles were close. Detailed properties of oscillations at different frequencies were analyzed on the example of two type IV bursts. One of them was observed on April 7, 2011 when a CME happened. Another one (August 1, 2011) was registered without any CME. The 7 April type IV burst had two periods in the frames 75-85 and 35-85 minutes. Interesting feature of these oscillations is decreasing periods with time. The observed decreasing rates dP/dt equaled 0.03-0.07. Concerning type IV burst observed on August 1, 2011 the period of its oscillations increases from 17 min. at 30 MHz to 44 min. at 10 MHz. Connection of type IV burst oscillations with oscillations of magnetic arches and CMEs at corresponding altitudes are discussed. The work is fulfilled in the frame of FP7 project "SOLSPANET".

  2. Bursting neurons and ultrasound avoidance in crickets

    Directory of Open Access Journals (Sweden)

    Gary eMarsat

    2012-07-01

    Full Text Available Decision making in invertebrates often relies on simple neural circuits composed of only a few identified neurons. The relative simplicity of these circuits makes it possible to identify the key computation and neural properties underlying decisions. In this review, we summarize recent research on the neural basis of ultrasound avoidance in crickets, a response that allows escape from echolocating bats. The key neural property shaping behavioral output is high-frequency bursting of an identified interneuron, AN2, which carries information about ultrasound stimuli from receptor neurons to the brain. AN2's spike train consists of clusters of spikes –bursts– that may be interspersed with isolated, non-burst spikes. AN2 firing is necessary and sufficient to trigger avoidance steering but only high-rate firing, such as occurs in bursts, evokes this response. AN2 bursts are therefore at the core of the computation involved in deciding whether or not to steer away from ultrasound. Bursts in AN2 are triggered by synaptic input from nearly synchronous bursts in ultrasound receptors. Thus the population response at the very first stage of sensory processing –the auditory receptor- already differentiates the features of the stimulus that will trigger a behavioral response from those that will not. Adaptation, both intrinsic to AN2 and within ultrasound receptors, scales the burst-generating features according to the stimulus statistics, thus filtering out background noise and ensuring that bursts occur selectively in response to salient peaks in ultrasound intensity. Furthermore AN2’s sensitivity to ultrasound varies adaptively with predation pressure, through both developmental and evolutionary mechanisms. We discuss how this key relationship between bursting and the triggering of avoidance behavior is also observed in other invertebrate systems such as the avoidance of looming visual stimuli in locusts or heat avoidance in beetles.

  3. multicopper oxidases important for human iron metabolism

    Directory of Open Access Journals (Sweden)

    Diana Wierzbicka

    2014-01-01

    Full Text Available Multi-copper oxidases are a group of proteins which demonstrate enzymatic activity and are capable of oxidizing their substrates with the concomitant reduction of dioxygen to two water molecules. For some multi-copper oxidases there has been demonstrated ferroxidase activity which is related to their specific structure characterized by the presence of copper centres and iron-binding sites. Three multi-copper oxidases have been included in this group: ceruloplasmin, hephaestin and zyklopen. Multi copper oxidases which are expressed in different tissues are capable of oxidizing a wide spectrum of substrates. Multi-copper oxidases are capable of oxidizing a wide spectrum of substrates. Ceruloplasmin exhibits antioxidant activity as well as being involved in many other biological processes. The observations of phenotypic effects of absence or low expression of multi-copper ferroxidase-coding genes suggest that the main role of these proteins is taking part in iron metabolism. The main role of ceruloplasmin in iron turnover is oxidizing Fe2+ into Fe3+, a process which is essential for iron binding to transferrin (the main iron-transporting protein, as well as to ferritin (the main iron-storage protein. The function of hephaestin as ferroxidase is essential for iron binding to apotransferrin in the lamina propria of the intestinal mucosa, a process that is important for further transport of iron to the liver by the portal vein. Available data indicate that zyklopen is responsible for the placental iron transport. The presence of three multi-copper oxidases with ferroxidase activity emphasizes the significance of oxidation for iron metabolism. The distribution of multi-copper ferroxidases in many tissues ensures the proper iron turnover in the body as well as preventing toxic effects related to the presence of Fe2+ ions. These ions contribute to generation of free radicals, including the highly reactive hydroxyl radical, through the Fenton and Haber

  4. The Arecibo Fast Radio Burst: Dense Circum-burst Medium

    CERN Document Server

    Kulkarni, S R; Neill, J D

    2015-01-01

    The nature of fast radio bursts (FRB) has been extensively debated. Here we investigate FRB121102, detected at Arecibo telescope and remarkable for its unusually large spectral index. After extensive study we conclude that the spectral index is caused by a nebula with free-free absorption. We find that putative nebula must lie beyond the Milky Way. We conclude that FRBs are of extra-galactic origin and that they arise in dense star-forming regions. The challenge with extra-galactic models is the the high volumetric rate of FRBs. This high rate allows us to eliminate all models of catastrophic stellar deaths. Hyper-giant flares from young magnetars emerge as the most likely progenitors. Some of the consequences are: (i) Intergalactic FRB models can be safely ignored. (ii) The rich ISM environment of young magnetars can result in significant contribution to DM, Rotation Measure (RM) and in some cases to significant free-free optical depth. (iii) The star-forming regions in the host galaxies can contribute signi...

  5. Peroxidase-dependent apoplastic oxidative burst in Arabidopsis required for pathogen resistance

    Science.gov (United States)

    Bindschedler, Laurence V.; Dewdney, Julia; Blee, Kris A.; Stone, Julie M.; Asai, Tsuneaki; Plotnikov, Julia; Denoux, Carine; Hayes, Tezni; Gerrish, Chris; Davies, Dewi R.; Ausubel, Frederick M.; Bolwell, G. Paul

    2011-01-01

    Summary The oxidative burst is an early response to pathogen attack leading to the production of reactive oxygen species (ROS) including hydrogen peroxide. Two major mechanisms involving either NADPH oxidases or peroxidases that may exist singly or in combination in different plant species have been proposed for the generation of ROS. We identified an Arabidopsis thaliana azide-sensitive but diphenylene iodonium-insensitive apoplastic oxidative burst that generates H2O2 in response to a Fusarium oxysporum cell-wall preparation. Transgenic Arabidopsis plants expressing an anti-sense cDNA encoding a type III peroxidase, French bean peroxidase type 1 (FBP1) exhibited an impaired oxidative burst and were more susceptible than wild-type plants to both fungal and bacterial pathogens. Transcriptional profiling and RT-PCR analysis showed that the anti-sense (FBP1) transgenic plants had reduced levels of specific peroxidase-encoding mRNAs, including mRNAs corresponding to Arabidopsis genes At3g49120 (AtPCb) and At3g49110 (AtPCa) that encode two class III peroxidases with a high degree of homology to FBP1. These data indicate that peroxidases play a significant role in generating H2O2 during the Arabidopsis defense response and in conferring resistance to a wide range of pathogens. PMID:16889645

  6. Ballerina - pirouettes in search of gamma bursts

    DEFF Research Database (Denmark)

    Brandt, Søren Kristian; Lund, Niels; Pedersen, Henrik

    1999-01-01

    The cosmological origin of gamma ray bursts has now been established with reasonable certainty, Many more bursts will need to be studied to establish the typical distance scale, and to map out the large diversity in properties which have been indicated by the first handful of events. We are propo...... are proposing Ballerina, a small satellite to provide accurate positions and new data on the gamma-ray bursts. We anticipate a detection rate an order of magnitude larger than obtained from Beppo-SAX....

  7. ESTIMATE OF BURSTING PRESSURE OF MILD STEEL PRESSURE VESSEL AND PRESENTATION OF BURSTING FORMULA

    Institute of Scientific and Technical Information of China (English)

    ZHENG Chuanxiang

    2006-01-01

    In order to get more precise bursting pressure formula of mild steel, hundreds of bursting experiments of mild steel pressure vessels such as Q235(Gr.D) and 20R(1020) are done. Based on statistical data of bursting pressure and modification of Faupel formula, a more precise modified formula is given out according to the experimental data. It is proved to be more accurate after examining other bursting pressure value presented in many references. This bursting formula is very accurate in these experiments using pressure vessels with different diameter and shell thickness.Obviously, this modified bursting formula can be used in mild steel pressure vessels with different diameter and thickness of shell.

  8. Evolution of the bursting-layer wave during a Type 1 X-ray burst

    CERN Document Server

    Berkhout, R G

    2007-01-01

    In a popular scenario due to Heyl, quasi periodic oscillations (QPOs) which are seen during type 1 X-ray bursts are produced by giant travelling waves in neutron-star oceans. Piro and Bildsten have proposed that during the burst cooling the wave in the bursting layer may convert into a deep crustal interface wave, which would cut off the visible QPOs. This cut-off would help explain the magnitude of the QPO frequency drift, which is otherwise overpredicted by a factor of several in Heyl's scenario. In this paper, we study the coupling between the bursting layer and the deep ocean. The coupling turns out to be weak and only a small fraction of the surface-wave energy gets transferred to that of the crustal-interface wave during the burst. Thus the crustal-interface wave plays no dynamical role during the burst, and no early QPO cut-off should occur.

  9. Separation of bacteriochlorophyll homologues from green photosynthetic sulfur bacteria by reversed-phase HPLC.

    Science.gov (United States)

    Borrego, C M; Garcia-Gil, L J

    1994-07-01

    A reversed-phase High Performance Liquid Cromatography (HPLC) method has been developed to accurately separate bacteriochlorophyllsc, d ande homologues in a reasonably short run time of 60 minutes. By using this method, two well-defined groups of bacteriochlorophyll homologue peaks can be discriminated. The first one consists of 4 peaks (min 24 to 30), which corresponds to the four main farnesyl homologues. The second peak subset is formed by a cluster of up to 10 minor peaks (min 33 to 40). These peaks can be related with series of several alcohol esters of the different chlorosome chlorophylls. The number of homologues was, however, quite variable depending on both, the bacteriochlorophyll and the bacterial species. The method hereby described, also provides a good separation of other photosynthetic pigments, either bacterial (Bacteriochlorophylla, chlorobactene, isorenieratene and okenone) or algal ones (Chlorophylla, Pheophytina and β-carotene). A preliminary screening of the homologue composition of several green photosynthetic bacterial species and isolates, has revealed different relative quantitative patterns. These differences seem to be related to physiological aspects rather than to taxonomic ones. The application of the method to the study of natural populations avoids the typical drawbacks on the pigment identification of overlapping eukaryotic and prokaryotic phototrophic microorganisms, giving further information about their physiological status.

  10. Gamma-Ray Burst Progenitors

    Science.gov (United States)

    Levan, Andrew; Crowther, Paul; de Grijs, Richard; Langer, Norbert; Xu, Dong; Yoon, Sung-Chul

    2016-12-01

    We review our current understanding of the progenitors of both long and short duration gamma-ray bursts (GRBs). Constraints can be derived from multiple directions, and we use three distinct strands; (i) direct observations of GRBs and their host galaxies, (ii) parameters derived from modelling, both via population synthesis and direct numerical simulation and (iii) our understanding of plausible analog progenitor systems observed in the local Universe. From these joint constraints, we describe the likely routes that can drive massive stars to the creation of long GRBs, and our best estimates of the scenarios that can create compact object binaries which will ultimately form short GRBs, as well as the associated rates of both long and short GRBs. We further discuss how different the progenitors may be in the case of black hole engine or millisecond-magnetar models for the production of GRBs, and how central engines may provide a unifying theme between many classes of extremely luminous transient, from luminous and super-luminous supernovae to long and short GRBs.

  11. On Gamma-Ray Bursts

    CERN Document Server

    Ruffini, Remo; Bianco, Carlo Luciano; Caito, Letizia; Chardonnet, Pascal; Cherubini, Christian; Dainotti, Maria Giovanna; Fraschetti, Federico; Geralico, Andrea; Guida, Roberto; Patricelli, Barbara; Rotondo, Michael; Hernandez, Jorge Armando Rueda; Vereshchagin, Gregory; Xue, She-Sheng

    2008-01-01

    (Shortened) We show by example how the uncoding of Gamma-Ray Bursts (GRBs) offers unprecedented possibilities to foster new knowledge in fundamental physics and in astrophysics. After recalling some of the classic work on vacuum polarization in uniform electric fields by Klein, Sauter, Heisenberg, Euler and Schwinger, we summarize some of the efforts to observe these effects in heavy ions and high energy ion collisions. We then turn to the theory of vacuum polarization around a Kerr-Newman black hole, leading to the extraction of the blackholic energy, to the concept of dyadosphere and dyadotorus, and to the creation of an electron-positron-photon plasma. We then present a new theoretical approach encompassing the physics of neutron stars and heavy nuclei. It is shown that configurations of nuclear matter in bulk with global charge neutrality can exist on macroscopic scales and with electric fields close to the critical value near their surfaces. These configurations may represent an initial condition for the...

  12. Gamma-ray burst progenitors

    CERN Document Server

    Levan, Andrew; de Grijs, Richard; Langer, Norbert; Xu, Dong; Yoon, Sung-Chul

    2016-01-01

    We review our current understanding of the progenitors of both long and short duration gamma-ray bursts (GRBs). Constraints can be derived from multiple directions, and we use three distinct strands; i) direct observations of GRBs and their host galaxies, ii) parameters derived from modeling, both via population synthesis and direct numerical simulation and iii) our understanding of plausible analog progenitor systems observed in the local Universe. From these joint constraints, we describe the likely routes that can drive massive stars to the creation of long GRBs, and our best estimates of the scenarios that can create compact object binaries which will ultimately form short GRBs, as well as the associated rates of both long and short GRBs. We further discuss how different the progenitors may be in the case of black hole engine or millisecond-magnetar models for the production of GRBs, and how central engines may provide a unifying theme between many classes of extremely luminous transient, from luminous an...

  13. Gamma-ray Burst Cosmology

    CERN Document Server

    Wang, F Y; Liang, E W

    2015-01-01

    Gamma-ray bursts (GRBs) are the most luminous electromagnetic explosions in the Universe, which emit up to $8.8\\times10^{54}$ erg isotropic equivalent energy in the hard X-ray band. The high luminosity makes them detectable out to the largest distances yet explored in the Universe. GRBs, as bright beacons in the deep Universe, would be the ideal tool to probe the properties of high-redshift universe: including the cosmic expansion and dark energy, star formation rate, the reionization epoch and the metal enrichment history of the Universe. In this article, we review the luminosity correlations of GRBs, and implications for constraining the cosmological parameters and dark energy. Observations show that the progenitors of long GRBs are massive stars. So it is expected that long GRBs are tracers of star formation rate. We also review the high-redshift star formation rate derived from GRBs, and implications for the cosmic reionization history. The afterglows of GRBs generally have broken power-law spectra, so it...

  14. Bursting Smoke as an Infrared Countermeasure

    National Research Council Canada - National Science Library

    Amarjit Singh; P. J. Kamale; S. A. Joshi; L. K. Bankar

    1998-01-01

    ...) using cadmium-mercury-telluride (CMI) detector cooled by liquid nitrogen. The particle size and shape of the powders used in the bursting smokes were determined microscopically using Carl Zeiss Jena Neophot- 21...

  15. Expected Performance of the GLAST Burst Monitor

    Science.gov (United States)

    Meegan, Charles; Fishman, Gerald; Kouveliotou, Chryssa; Wilson-Hodge, Colleen; Paciesas, William; Preece, Robert; Briggs, Michael; Bhat, Narayana; Connaughton, Valerie; Greiner, Jochen; vonKienlin, Andreas; Diehl, Roland; Steinle, Helmut; Bissaldi, Elisabetta; Kippen, R. Marc

    2007-01-01

    The GLAST Burst Monitor (GBM) will enhance LAT observations of GRBs by extending the spectral coverage from the LAT threshold down to approx. 8 kev, and will provide a trigger for re-orienting the spacecraft to observe delayed emission from selected bursts outside the LAT field of view. GBM consists of twelve NaI scintillation detectors operating in the 8 kev to 1 MeV energy range and two BGO scintillation detectors operating in the 150 keV to 30 MeV energy range. Detector resolution, effective area, and angular response have been determined by calibrations. Analyses indicate that the on-board burst threshold will be approx. 0.7 photon/cm2/s and the on-board burst localization accuracy will typically be better than 8 degrees.

  16. Plasma Bursts in Deep Penetration Laser Welding

    Science.gov (United States)

    Mrňa, L.; Šarbort, M.

    We present an experimental study of the deep penetration laser welding process which aims to analyze the plasma plume oscillations on a short time scale. Using the high-speed camera we show that the plasma comes out of the keyhole in the form of short bursts rather than the continuous flow. We detect these bursts as the short-time intensity oscillations of light emissions coming from the plasma plume. We determine the period of bursts using the statistical signal processing methods and the short-time frequency analysis. Finally, we compare the characteristics of plasma bursts and the geometry of resulting welds carried out on a 2 kW Yb:YAG laser welding machine for the steel workpiece and various welding parameters settings.

  17. Long Burst Error Correcting Codes Project

    Data.gov (United States)

    National Aeronautics and Space Administration — Long burst error mitigation is an enabling technology for the use of Ka band for high rate commercial and government users. Multiple NASA, government, and commercial...

  18. GLAST Burst Monitor Trigger Classification Algorithm

    Science.gov (United States)

    Perrin, D. J.; Sidman, E. D.; Meegan, C. A.; Briggs, M. S.; Connaughton, V.

    2004-01-01

    The Gamma Ray Large Area Space Telescope (GLAST), currently set for launch in the first quarter of 2007, will consist of two instruments, the GLAST Burst Monitor (GBM) and the Large Area Telescope (LAT). One of the goals of the GBM is to identify and locate gamma-ray bursts using on-board software. The GLAST observatory can then be re-oriented to allow observations by the LAT. A Bayesian analysis will be used to distinguish gamma-ray bursts from other triggering events, such as solar flares, magnetospheric particle precipitation, soft gamma repeaters (SGRs), and Cygnus X-1 flaring. The trigger parameters used in the analysis are the burst celestial coordinates, angle from the Earth's horizon, spectral hardness, and the spacecraft geomagnetic latitude. The algorithm will be described and the results of testing will be presented.

  19. Bursts from the very early universe

    Energy Technology Data Exchange (ETDEWEB)

    Silk, J. [Department of Physics, University of Oxford, Oxford OX1 3RH (United Kingdom); Stodolsky, L. [Max-Planck-Institut fuer Physik, Foehringer Ring 6, 80805 Munich (Germany)]. E-mail: les@mppmu.mpg.de

    2006-07-27

    Bursts of weakly interacting particles such as neutrinos or even more weakly interacting particles such as wimps and gravitons from the very early universe would offer a much deeper 'look back time' to early epochs than is possible with photons. We consider some of the issues related to the existence of such bursts and their detectability. Characterizing the burst rate by a probability P per Hubble four-volume we find, for events in the radiation-dominated era, that the natural unit of description is the present intensity of the CMB times P. The existence of such bursts would make the observation of pheno associated with very early times in cosmology at least conceptually possible. One might even hope to probe the transplanckian epoch if complexes more weakly interacting than the graviton can exist. Other conceivable applications include the potential detectability of the formation of 'pocket universes' in a multiverse.

  20. FRBCAT: The Fast Radio Burst Catalogue

    CERN Document Server

    Petroff, E; Jameson, A; Keane, E F; Bailes, M; Kramer, M; Morello, V; Tabbara, D; van Straten, W

    2016-01-01

    Here we present a catalogue of known Fast Radio Burst (FRB) sources in the form of an online catalogue, FRBCAT. The catalogue includes information about the instrumentation used for the observations for each detected burst, the measured quantities from each observation, and model-dependent quantities derived from observed quantities. To aid in consistent comparisons of burst properties such as width and signal-to-noise ratios we have reprocessed all the bursts for which we have access to the raw data, with software which we make available. The originally derived properties are also listed for comparison. The catalogue is hosted online as a MySQL database which can also be downloaded in tabular or plain text format for off-line use. This database will be maintained for use by the community for studies of the FRB population as it grows.

  1. CMEs and frequency cutoff of solar bursts

    Science.gov (United States)

    Stanislavsky, Al.; Konovalenko, Al.; Koval, Ar.; Volvach, Y.; Zarka, P.

    2016-05-01

    Radio observations of solar bursts with high-frequency cutoff by the radio telescope UTR-2 (near Kharkiv, Ukraine) at 8-33 MHz on 17-19 August 2012 are presented. Such cutoff may be attributed to the emergence of the burst sources behind limb of the Sun with respect to an observer on the Earth. The events are strongly associated with solar eruptions occurred in a new active region. Ray tracing simulations show that the CMEs play a constructive role for the behind-limb bursts to be detected in ground-based observations. Likely, due to tunnel-like cavities with low density in CMEs, the radio emission of behind-limb solar bursts can be directed towards the Earth.

  2. Research on experiment and calculation of foam bursting device

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    This research presents experimental data on mechanical foam bursting device, based on the high speed of air fluid impinging insidethe foam bursting device, foam bubbles disrupted as a consequence of pressures changed very quickly as shear force and their impact forces. Experimental data on foam-bursting capacity have been presented. Designed device can provide effective foam bursting on collapse foam.

  3. The Five Year Fermi/GBM Magnetar Burst Catalog

    NARCIS (Netherlands)

    A.C. Collazzi; C. Kouveliotou; A.J. van der Horst; G.A. Younes; Y. Kaneko; E. Göğüş; L. Lin; J. Granot; M.H. Finger; V.L. Chaplin; D. Huppenkothen; A.L. Watts; A. von Kienlin; M.G. Baring; D. Gruber; P.N. Bhat; M.H. Gibby; N. Gehrels; J. Mcenery; M. van der Klis; R.A.M.J. Wijers

    2015-01-01

    Since launch in 2008, the Fermi Gamma-ray Burst Monitor (GBM) has detected many hundreds of bursts from magnetar sources. While the vast majority of these bursts have been attributed to several known magnetars, there is also a small sample of magnetar-like bursts of unknown origin. Here, we present

  4. 21 CFR 866.2420 - Oxidase screening test for gonorrhea.

    Science.gov (United States)

    2010-04-01

    ... Section 866.2420 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF HEALTH AND HUMAN SERVICES (CONTINUED) MEDICAL DEVICES IMMUNOLOGY AND MICROBIOLOGY DEVICES Microbiology Devices § 866.2420 Oxidase... ingredient that will react with cytochrome oxidase. When cytochrome oxidase is present, the swab turns a dark...

  5. Bilirubin Oxidase Activity of Bacillus subtilis CotA

    OpenAIRE

    Sakasegawa, S; Ishikawa, H.; Imamura, S.; Sakuraba, H.; Goda, S.; Ohshima, T.

    2006-01-01

    The spore coat protein CotA from Bacillus subtilis was previously identified as a laccase. We have now found that CotA also shows strong bilirubin oxidase activity and markedly higher affinity for bilirubin than conventional bilirubin oxidase. This is the first characterization of bilirubin oxidase activity in a bacterial protein.

  6. Kinetic mechanism of putrescine oxidase from Rhodococcus erythropolis

    NARCIS (Netherlands)

    Kopacz, Malgorzata; Heuts, Dominic P. H. M.; Fraaije, Marco W.

    2014-01-01

    Putrescine oxidase from Rhodococcus erythropolis (PuO) is a flavin-containing amine oxidase from the monoamine oxidase family that performs oxidative deamination of aliphatic diamines. In this study we report pre-steady-state kinetic analyses of the enzyme with the use of single-and double-mixing st

  7. THERMOSTABILITY OF RESPIRATORY TERMINAL OXIDASES IN THE LIPID ENVIRONMENT

    NARCIS (Netherlands)

    Elferink, Marieke G.L.; Bosmal, Tjibbe; Lolkema, Juke S.; Gleiszner, Michael; Driessen, Arnold J.M.; Konings, Wil N.

    1995-01-01

    The effect of the lipid environment on the thermostability of three respiratory terminal oxidases was determined. Cytochrome-e oxidase from beef heart and Bacillus stearothermophilus were used as representative proteins from mesophilic and thermophilic origin, respectively. Quinol oxidase from the a

  8. Kinetic mechanism of putrescine oxidase from Rhodococcus erythropolis

    NARCIS (Netherlands)

    Kopacz, Malgorzata; Heuts, Dominic P. H. M.; Fraaije, Marco W.

    2014-01-01

    Putrescine oxidase from Rhodococcus erythropolis (PuO) is a flavin-containing amine oxidase from the monoamine oxidase family that performs oxidative deamination of aliphatic diamines. In this study we report pre-steady-state kinetic analyses of the enzyme with the use of single-and double-mixing

  9. Optimal Codes for the Burst Erasure Channel

    Science.gov (United States)

    Hamkins, Jon

    2010-01-01

    Deep space communications over noisy channels lead to certain packets that are not decodable. These packets leave gaps, or bursts of erasures, in the data stream. Burst erasure correcting codes overcome this problem. These are forward erasure correcting codes that allow one to recover the missing gaps of data. Much of the recent work on this topic concentrated on Low-Density Parity-Check (LDPC) codes. These are more complicated to encode and decode than Single Parity Check (SPC) codes or Reed-Solomon (RS) codes, and so far have not been able to achieve the theoretical limit for burst erasure protection. A block interleaved maximum distance separable (MDS) code (e.g., an SPC or RS code) offers near-optimal burst erasure protection, in the sense that no other scheme of equal total transmission length and code rate could improve the guaranteed correctible burst erasure length by more than one symbol. The optimality does not depend on the length of the code, i.e., a short MDS code block interleaved to a given length would perform as well as a longer MDS code interleaved to the same overall length. As a result, this approach offers lower decoding complexity with better burst erasure protection compared to other recent designs for the burst erasure channel (e.g., LDPC codes). A limitation of the design is its lack of robustness to channels that have impairments other than burst erasures (e.g., additive white Gaussian noise), making its application best suited for correcting data erasures in layers above the physical layer. The efficiency of a burst erasure code is the length of its burst erasure correction capability divided by the theoretical upper limit on this length. The inefficiency is one minus the efficiency. The illustration compares the inefficiency of interleaved RS codes to Quasi-Cyclic (QC) LDPC codes, Euclidean Geometry (EG) LDPC codes, extended Irregular Repeat Accumulate (eIRA) codes, array codes, and random LDPC codes previously proposed for burst erasure

  10. Syudy of Token Generation for Burst Traffic Shaping in Optical Burst Switching Networks

    Institute of Scientific and Technical Information of China (English)

    Tang Wan; So Won-ho; Lu Ji-guang; Kim Young-chon

    2004-01-01

    Traffic shaping is one of important control operation to guarantee the Quality of Service (QoS) in optical burst switching (OBS) networks. The efficiency of traffic shaping is mainly determined by token generation method. In this paper, token generation methods of traffic shaping are evaluated by using three kinds of probability distribution, and are analyzed in terms of burst blocking probability, throughput and correlation by simulation. The simulation results show that the token generation methods decrease the burst correlation of Label Switched Paths (LSPs), and solve traffic congestion as well. The different burst arrival processes have small impact on the blocking probability for OBS networks.

  11. QoS-guaranteed burst transmission for VoIP service over optical burst switching networks

    Science.gov (United States)

    Tachibana, Takuji; Kasahara, Shoji

    2007-08-01

    We propose a burst transmission method that guarantees the voice over Internet protocol (VoIP) service. The proposed method consists of three techniques: round-robin burst assembly with slotted scheduling, priority control with void filling, and hop-based preemption. Each technique is utilized so that the burst loss probability and the burst transmission delay satisfy VoIP quality of service (QoS). We evaluate by simulation the performance of the proposed method in NSFNET with 14 nodes. Numerical examples show that our proposed method is effective for guaranteeing the VoIP QoS while accommodating a large number of VoIP users.

  12. Gamma-Ray Burst Class Properties

    Science.gov (United States)

    Hakkila, Jon; Haglin, David J.; Pendleton, Geoffrey N.; Mallozzi, Robert S.; Meegan, Charles A.; Roiger, Richard J.

    2000-01-01

    Guided by the supervised pattern recognition algorithm C4.5 developed by Quinlan in 1986, we examine the three gamma-ray burst classes identified by Mukherjee et al. in 1998. C4.5 provides strong statistical support for this classification. However, with C4.5 and our knowledge of the Burst and Transient Source Experiment (BATSE) instrument, we demonstrate that class 3 (intermediate fluence, intermediate duration, soft) does not have to be a distinct source population: statistical/systematic errors in measuring burst attributes combined with the well-known hardness/intensity correlation can cause low peak flux class 1 (high fluence, long, intermediate hardness) bursts to take on class 3 characteristics naturally. Based on our hypothesis that the third class is not a distinct one, we provide rules so that future events can be placed in either class 1 or class 2 (low fluence, short, hard). We find that the two classes are relatively distinct on the basis of Band's work in 1993 on spectral parameters alpha, beta, and E (sub peak) alone. Although this does not indicate a better basis for classification, it does suggest that different physical conditions exist for class 1 and class 2 bursts. In the process of studying burst class characteristics, we identify a new bias affecting burst fluence and duration measurements. Using a simple model of how burst duration can be underestimated, we show how this fluence duration bias can affect BATSE measurements and demonstrate the type of effect it can have on the BATSE fluence versus peak flux diagram.

  13. Occurrence and Biocatalytic Potential of Carbohydrate Oxidases.

    NARCIS (Netherlands)

    Hellemond, van E.W.; Leferink, N.G.H.; Heuts, D.P.H.M.; Fraaije, M.W.; Berkel, van W.J.H.

    2006-01-01

    Carbohydrate oxidases are found in all kingdoms of life but are mostly found in fungi. Their natural role is not always clear. Usage of molecular oxygen as electron acceptor is not a logical choice when the enzyme is part of a catabolic pathway. This chapter provides an overview of the occurrence

  14. A colorimetric assay for cytokinin oxidase.

    Science.gov (United States)

    Libreros-Minotta, C A; Tipton, P A

    1995-11-01

    A simple and rapid colorimetric assay for cytokinin oxidase is described. The assay is based on the formation of a Schiff base between the enzymatic reaction product 3-methyl-2-butenal and p-aminophenol. The assay is effective in the submicromolar concentration range and can be used in crude plant extracts as well as in more highly purified preparations.

  15. Spectrophotometric Assay of Immobilized Glucose Oxidase

    Directory of Open Access Journals (Sweden)

    Nojan Noorbehesht

    2016-06-01

    Full Text Available Enzyme results in change the substrate of product. Each enzyme may act on specific substrates, resulting in product or different products. The enzyme glucose oxidase (GOX is a bio catalyst. It accelerates the process of transforming glucose into hydrogen peroxide (H2O2 . These enzymes are used in the chemical industry, food industry, cosmetics and kits for diagnosis of glucose. There are many researches about immobilizations of Glucose Oxide to increase specifications such as repeated use, recovery, stability, shelf life and other features In this work, glucose oxidase enzyme using covalent bonding is placed on the carrier of carbon nanotubes. In this study, multi-walled carbon nanotubes have been used as adsorbents. Also, carbon nanotubes have been functionalized by sulfuric acid and nitric acid with a high concentration. Glucose oxidase is a biological biocatalyst enzyme. It accelerates changing glucose to H2O2. This enzyme is used in the chemical industry, food industry, cosmetics and glucose diagnostic kits. For example, as a result of ongoing research working focuses on the development of glucose biosensors, GOX in practice as standard enzyme has been revealed for immobilization of oxidative enzyme.GOX correct fixation on the MWNTs carrier is a way to reuse enzyme and miniature of biosensor devices and structures. In this study, a spectrophotometer was used to determine the absorbance of the enzyme glucose oxidase (GOX to review its activities after stabilizing the carbon nanotubes.

  16. Lysyl oxidase mediates hypoxic control of metastasis

    DEFF Research Database (Denmark)

    Erler, Janine Terra; Giaccia, Amato J

    2006-01-01

    Hypoxic cancer cells pose a great challenge to the oncologist because they are especially aggressive, metastatic, and resistant to therapy. Recently, we showed that elevation of the extracellular matrix protein lysyl oxidase (LOX) correlates with metastatic disease and is essential for hypoxia...

  17. Phase analysis method for burst onset prediction

    Science.gov (United States)

    Stellino, Flavio; Mazzoni, Alberto; Storace, Marco

    2017-02-01

    The response of bursting neurons to fluctuating inputs is usually hard to predict, due to their strong nonlinearity. For the same reason, decoding the injected stimulus from the activity of a bursting neuron is generally difficult. In this paper we propose a method describing (for neuron models) a mechanism of phase coding relating the burst onsets with the phase profile of the input current. This relation suggests that burst onset may provide a way for postsynaptic neurons to track the input phase. Moreover, we define a method of phase decoding to solve the inverse problem and estimate the likelihood of burst onset given the input state. Both methods are presented here in a unified framework, describing a complete coding-decoding procedure. This procedure is tested by using different neuron models, stimulated with different inputs (stochastic, sinusoidal, up, and down states). The results obtained show the efficacy and broad range of application of the proposed methods. Possible applications range from the study of sensory information processing, in which phase-of-firing codes are known to play a crucial role, to clinical applications such as deep brain stimulation, helping to design stimuli in order to trigger or prevent neural bursting.

  18. Solid-Phase Synthesis of Amine/Carboxyl Substituted Prolines and Proline Homologues: Scope and Limitations.

    Science.gov (United States)

    Zhou, Ziniu; Scott, William L; O'Donnell, Martin J

    2016-03-15

    A solid-phase procedure is used to synthesize racemic peptidomimetics based on the fundamental peptide unit. The peptidomimetics are constructed around proline or proline homologues variably substituted at the amine and carbonyl sites. The procedure expands the diversity of substituted peptidomimetic molecules available to the Distributed Drug Discovery (D3) project. Using a BAL-based solid-phase synthetic sequence the proline or proline homologue subunit is both constructed and incorporated into the peptidomimetic by an α-alkylation, hydrolysis and intramolecular cyclization sequence. Further transformations on solid-phase provide access to a variety of piperazine derivatives representing a class of molecules known to exhibit central nervous system activity. The procedure works well with proline cores, but with larger six- and seven-membered ring homologues the nature of the carboxylic acid acylating the cyclic amine can lead to side reactions and result in poor overall yields.

  19. Peptidoglycan inducible expression of a serine proteinase homologue from kuruma shrimp (Marsupenaeus japonicus).

    Science.gov (United States)

    Rattanachai, Achara; Hirono, Ikuo; Ohira, Tsuyoshi; Takahashi, Yukinori; Aoki, Takashi

    2005-01-01

    A cDNA encoding a serine proteinase homologue of kuruma shrimp (Marsupenaeus japonicus) was cloned. The 1257 bp cDNA encodes a 339 amino acid putative peptide, with a signal sequence of 16 amino acid residues. The deduced amino acid sequence is 42-67% similar to the immune-related serine proteinases and serine proteinase homologues of arthropods. It contains catalytic triad residues in the putative catalytic domain except for one substitution of Ser by a Gly residue. The six cysteine residues that form three disulphide bridges in most serine proteinases were conserved. The M. japonicus serine proteinase homologue was mainly expressed in haemocytes, in which expression dramatically increased after 3 days feeding with peptidoglycan at 0.2 mg kg(-1) shrimp body weight per day.

  20. Expression pattern of INNER NO OUTER homologue in Nymphaea (water lily family, Nymphaeaceae).

    Science.gov (United States)

    Yamada, Toshihiro; Ito, Motomi; Kato, Masahiro

    2003-10-01

    Two homologues of INNER NO OUTER ( INO) in Nymphaea alba and N. colorata (Nymphaeaceae) were isolated and the expression pattern of the N. alba INO homologue NaINO was examined by in situ hybridization. The INO homologues obtained have a portion similar to INO in the predicted amino acid sequences between the conserved zinc finger-like and YABBY domains. In an in situ hybridization analysis, NaINO is expressed in the outer epidermis of the outer integument, inner integument, and the tip of the nucellus. The pattern observed in the outer integument is very similar to that of Arabidopsis thaliana, while the expression in the inner integument and nucellus is not observed in A. thaliana.

  1. Identification and Characterisation of the Murine Homologue of the Gene Responsible for Cystinosis, Ctns

    Directory of Open Access Journals (Sweden)

    Poras Isabelle

    2000-12-01

    Full Text Available Abstract Background Cystinosis is an autosomal recessive disorder characterised by an intralysosomal accumulation of cystine, and affected individuals progress to end-stage renal failure before the age of ten. The causative gene, CTNS, was cloned in 1998 and the encoded protein, cystinosin, was predicted to be a lysosomal membrane protein. Results We have cloned the murine homologue of CTNS, Ctns, and the encoded amino acid sequence is 92.6% similar to cystinosin. We localised Ctns to mouse chromosome 11 in a region syntenic to human chromosome 17 containing CTNS. Ctns is widely expressed in all tissues tested with the exception of skeletal muscle, in contrast to CTNS. Conclusions We have isolated, characterised and localised Ctns, the murine homologue of CTNS underlying cystinosis. Furthermore, our work has brought to light the existence of a differential pattern of expression between the human and murine homologues, providing critical information for the generation of a mouse model for cystinosis.

  2. CRIP homologues maintain apical cytoskeleton to regulate tubule size in C. elegans.

    Science.gov (United States)

    Tong, Xiangyan; Buechner, Matthew

    2008-05-01

    Maintenance of the shape and diameter of biological tubules is a critical task in the development and physiology of all metazoan organisms. We have cloned the exc-9 gene of Caenorhabditis elegans, which regulates the diameter of the single-cell excretory canal tubules. exc-9 encodes a homologue of the highly expressed mammalian intestinal LIM-domain protein CRIP, whose function has not previously been determined. A second well-conserved CRIP homologue functions in multiple valves of C. elegans. EXC-9 shows genetic interactions with other EXC proteins, including the EXC-5 guanine exchange factor that regulates CDC-42 activity. EXC-9 and its nematode homologue act in polarized epithelial cells that must maintain great flexibility at their apical surface; our results suggest that CRIPs function to maintain cytoskeletal flexibility at the apical surface.

  3. Time Resolved Spectroscopy of SGR J1550-5418 Bursts Detected with Fermi/Gamma-Ray Burst Monitor

    NARCIS (Netherlands)

    Younes, G.; Kouveliotou, C.; van der Horst, A.J.; Baring, M.G.; Granot, J.; Watts, A.L.; Bhat, P.N.; Collazzi, A.; Gehrels, N.; Gorgone, N.; Göğüş, E.; Gruber, D.; Grunblatt, S.; Huppenkothen, D.; Kaneko, Y.; von Kienlin, A.; van der Klis, M.; Lin, L.; Mcenery, J.; van Putten, T.; Wijers, R.A.M.J.

    2014-01-01

    We report on a time-resolved spectroscopy of the 63 brightest bursts of SGR J1550-5418, detected with the Fermi/Gamma-ray Burst Monitor during its 2008-2009 intense bursting episode. We performed spectral analysis down to 4 ms timescales to characterize the spectral evolution of the bursts. Using a

  4. A multicopper oxidase is essential for manganese oxidation and laccase-like activity in Pedomicrobium sp. ACM 3067.

    Science.gov (United States)

    Ridge, Justin P; Lin, Marianne; Larsen, Eloise I; Fegan, Mark; McEwan, Alastair G; Sly, Lindsay I

    2007-04-01

    Pedomicrobium sp. ACM 3067 is a budding-hyphal bacterium belonging to the alpha-Proteobacteria which is able to oxidize soluble Mn2+ to insoluble manganese oxide. A cosmid, from a whole-genome library, containing the putative genes responsible for manganese oxidation was identified and a primer-walking approach yielded 4350 bp of novel sequence. Analysis of this sequence showed the presence of a predicted three-gene operon, moxCBA. The moxA gene product showed homology to multicopper oxidases (MCOs) and contained the characteristic four copper-binding motifs (A, B, C and D) common to MCOs. An insertion mutation of moxA showed that this gene was essential for both manganese oxidation and laccase-like activity. The moxB gene product showed homology to a family of outer membrane proteins which are essential for Type I secretion in Gram-negative bacteria. moxBA has not been observed in other manganese-oxidizing bacteria but homologues were identified in the genomes of several bacteria including Sinorhizobium meliloti 1021 and Agrobacterium tumefaciens C58. These results suggest that moxBA and its homologues constitute a family of genes encoding an MCO and a predicted component of the Type I secretion system.

  5. Coronatine Inhibits Stomatal Closure through Guard Cell-Specific Inhibition of NADPH Oxidase-Dependent ROS Production

    Science.gov (United States)

    Toum, Laila; Torres, Pablo S.; Gallego, Susana M.; Benavídes, María P.; Vojnov, Adrián A.; Gudesblat, Gustavo E.

    2016-01-01

    Microbes trigger stomatal closure through microbe-associated molecular patterns (MAMPs). The bacterial pathogen Pseudomonas syringae pv. tomato (Pst) synthesizes the polyketide toxin coronatine, which inhibits stomatal closure by MAMPs and by the hormone abscisic acid (ABA). The mechanism by which coronatine, a jasmonic acid-isoleucine analog, achieves this effect is not completely clear. Reactive oxygen species (ROS) are essential second messengers in stomatal immunity, therefore we investigated the possible effect of coronatine on their production. We found that coronatine inhibits NADPH oxidase-dependent ROS production induced by ABA, and by the flagellin-derived peptide flg22. This toxin also inhibited NADPH oxidase-dependent stomatal closure induced by darkness, however, it failed to prevent stomatal closure by exogenously applied H2O2 or by salicylic acid, which induces ROS production through peroxidases. Contrary to what was observed on stomata, coronatine did not affect the oxidative burst induced by flg22 in leaf disks. Additionally, we observed that in NADPH oxidase mutants atrbohd and atrbohd/f, as well as in guard cell ABA responsive but flg22 insensitive mutants mpk3, mpk6, npr1-3, and lecrk-VI.2-1, the inhibition of ABA stomatal responses by both coronatine and the NADPH oxidase inhibitor diphenylene iodonium was markedly reduced. Interestingly, coronatine still impaired ABA-induced ROS synthesis in mpk3, mpk6, npr1-3, and lecrk-VI.2-1, suggesting a possible feedback regulation of ROS on other guard cell ABA signaling elements in these mutants. Altogether our results show that inhibition of NADPH oxidase-dependent ROS synthesis in guard cells plays an important role during endophytic colonization by Pst through stomata. PMID:28018388

  6. Coronatine inhibits stomatal closure through guard cell-specific inhibition of NADPH oxidase-dependent ROS production

    Directory of Open Access Journals (Sweden)

    Laila Toum

    2016-12-01

    Full Text Available Microbes trigger stomatal closure through microbe-associated molecular patterns (MAMPs. The bacterial pathogen Pseudomonas syringae pv. tomato (Pst synthesizes the polyketide toxin coronatine, which inhibits stomatal closure by MAMPs and the hormone abscisic acid (ABA. The mechanism by which coronatine, a jasmonic acid-isoleucine analog, achieves this effect is not completely clear. Reactive oxygen species (ROS are essential second messengers in stomatal immunity, therefore we investigated the possible effect of coronatine on their production. We found that coronatine inhibits NADPH oxidase-dependent ROS production induced by ABA, and by the flagellin-derived peptide flg22. This toxin also inhibited NADPH oxidase-dependent stomatal closure induced by darkness, however it failed to prevent stomatal closure by exogenously applied H2O2 or by salicylic acid, which induces ROS production through peroxidases. Contrary to what was observed on stomata, coronatine did not affect the oxidative burst induced by flg22 in leaf discs. Additionally, we observed that in NADPH oxidase mutants atrbohd and atrbohd/f, as well as in guard cell ABA responsive but flg22 insensitive mutants mpk3, mpk6, npr1-3 and lecrk-VI.2-1, the inhibition of ABA stomatal responses by both coronatine and the NADPH oxidase inhibitor diphenylene iodonium was markedly reduced. Interestingly, coronatine still impaired ABA-induced ROS synthesis in mpk3, mpk6, npr1-3 and lecrk-VI.2-1, suggesting a possible feedback regulation of ROS on other guard cell ABA signalling elements in these mutants. Altogether our results show that inhibition of NADPH oxidase-dependent ROS synthesis in guard cells plays an important role during endophytic colonization by Pst through stomata.

  7. Modeling gamma-ray bursts

    Science.gov (United States)

    Maxham, Amanda

    Discovered serendipitously in the late 1960s, gamma-ray bursts (GRBs) are huge explosions of energy that happen at cosmological distances. They provide a grand physical playground to those who study them, from relativistic effects such as beaming, jets, shocks and blastwaves to radiation mechanisms such as synchrotron radiation to galatic and stellar populations and history. Through the Swift and Fermi space telescopes dedicated to observing GRBs over a wide range of energies (from keV to GeV), combined with accurate pinpointing that allows ground based follow-up observations in the optical, infrared and radio, a rich tapestry of GRB observations has emerged. The general picture is of a mysterious central engine (CE) probably composed of a black hole or neutron star that ejects relativistic shells of matter into intense magnetic fields. These shells collide and combine, releasing energy in "internal shocks" accounting for the prompt emission and flaring we see and the "external shock" or plowing of the first blastwave into the ambient surrounding medium has well-explained the afterglow radiation. We have developed a shell model code to address the question of how X-ray flares are produced within the framework of the internal shock model. The shell model creates randomized GRB explosions from a central engine with multiple shells and follows those shells as they collide, merge and spread, producing prompt emission and X-ray flares. We have also included a blastwave model, which can constrain X-ray flares and explain the origin of high energy (GeV) emission seen by the Fermi telescope. Evidence suggests that gamma-ray prompt emission and X-ray flares share a common origin and that at least some flares can only be explained by long-lasting central engine activity. We pay special attention to the time history of central engine activity, internal shocks, and observed flares. We calculate the gamma-ray (Swift/BAT band) and X-ray (Swift/XRT band) lightcurves for arbitrary

  8. Status and Advances of Researches on GA 20-oxidases

    Institute of Scientific and Technical Information of China (English)

    Li Wei; Chen Xiaoyang; Li Hui; Guo Hai

    2003-01-01

    GA 20-oxidase, the most important limiting enzyme, can catalyze a series of oxidization of GA biosynthesis pathwayfrom GA12 to GA9 and from GA53 to GA20 in the higher plants. This paper reviews the studies on the characters of GA 20-oxidase,the gene and the protein of GA 20-oxidase and the regulation of GA 20-oxidase gene expression in recent years. At the same time,the prospects for the gene transformation of GA 20-oxidase in agriculture, forestry and horticulture are also discussed.

  9. CRIP Homologues Maintain Apical Cytoskeleton to Regulate Tubule Size in C. elegans

    OpenAIRE

    Tong, Xiangyan; Buechner, Matthew

    2008-01-01

    Maintenance of the shape and diameter of biological tubules is a critical task in the development and physiology of all metazoan organisms. We have cloned the exc-9 gene of C. elegans, which regulates the diameter of the single-cell excretory canal tubules. exc-9 encodes a homologue of the highly expressed mammalian intestinal LIM-domain protein CRIP, whose function has not previously been determined. A second well-conserved CRIP homologue functions in multiple valves of C. elegans. EXC-9 sho...

  10. ASKAP Joins the Hunt for Mysterious Bursts

    Science.gov (United States)

    Kohler, Susanna

    2017-05-01

    A new telescope, the Australian Square Kilometre Array Pathfinder (ASKAP), has joined the search for energetic and elusive fast radio bursts. And in just a few days of looking, its already had success!Elusive TransientsThe Parkes radio telescope, which has detected all but five of the fast radio bursts published to date, has a very narrow field of view. [CSIRO]Fast radio bursts are mysterious millisecond-duration radio pulses that were first discovered around a decade ago. Since that time particularly in recent years weve made some progress toward the goal of localizing them. Were now fairly convinced that fast radio bursts come from outside of the galaxy, and yet theyre enormously bright orders of magnitude more luminous than any pulse seen from the Milky Way.Better identification of where these mysterious bursts come from would help us to determine what they are. But so far, weve discovered only around 30 such bursts, despite the fact that theyre estimated to occur at a rate of 3,000 events per day across the whole sky.Why are they so hard to find? Due to their short duration, effective detection would require instantaneous coverage of a very large fraction of the sky. The Parkes radio telescope which has detected all but five of the fast radio bursts published to date has a field of view spanning less than a square degree,significantly limiting our ability to rapidly survey for these transients.FRB 170107s band-averaged pulse (top) and dynamic spectrum (bottom). [Bannister et al. 2017]A New Array in TownA new player is now on the scene, however, and its already had huge success. ASKAP is a wide-field radio telescope made up of an array of 12-meter antennas. Using phased-array-feed technology, ASKAP is able to instantaneously observe an effective area of 160 square degrees an enormous field compared to Parkes 0.6 square degrees! This capability significantly increases our chances of being able to detect fast radio bursts.In a new study led by Keith Bannister

  11. EFFECT OF CROSSLINKING ON MITOCHONDRIAL CYTOCHROME c OXIDASE

    Energy Technology Data Exchange (ETDEWEB)

    Swanson, Maurice; Packer, Lester

    1979-12-01

    Purified and reconstituted cytochrome {und c} oxidase and mitochondria were crosslinked with biimidates in the presence and absence of cytochrome {und c}. These experiments indicate that oxidase subunit interactions are required for activity and that cytochrome {und c} mobility may be required for electron transport activity. Biimidate treatment of purified and reconstituted oxidase crosslinks all of the oxidase protomers except subunit I when {ge} 20% of the free amines are modified and inhibits steady state oxidase activity. Transient kinetics of ferrocytochrome {und c} oxidation and ferricytochrome {und a} reduction indicates inhibition of electron transfer from heme {und a} to heme {und a}{sub 3}. Crosslinking oxidase molecules to form large aggregates displaying rotational correlation times {ge} 1 ms does not affect oxidase activity. Crosslinking of mitochondria covalently binds the bc{sub 1} and {und aa}{sub 3} complexes to cytochrome {und c}, and inhibits steady-state oxidase activity considerably more than in the case of the purified oxidase. Addition of cytochrome {und c} to the purified oxidase or to {und c}-depleted mitoplasts increases inhibition slightly. Cytochrome {und c} oligomers act as competitive inhibitors of native {und c}, however, crosslinking of cytochrome {und c} to {und c}-depleted mitoplasts or purified oxidase (with dimethyl suberimidate or hetrobifunctional crosslinking reagents) results in a catalytically inactive complex.

  12. A role for NADPH oxidase in antigen presentation

    Directory of Open Access Journals (Sweden)

    Gail J Gardiner

    2013-09-01

    Full Text Available The nicotinamide adenine dinucleotide phosphate (NADPH oxidase expressed in phagocytes is a multi-subunit enzyme complex that generates superoxide (O2.-. This radical is an important precursor of hydrogen peroxide (H2O2 and other reactive oxygen species (ROS needed for microbicidal activity during innate immune responses. Inherited defects in NADPH oxidase give rise to chronic granulomatous disease (CGD, a primary immunodeficiency characterized by recurrent infections and granulomatous inflammation. Interestingly, CGD, CGD carrier status, and oxidase gene polymorphisms have all been associated with autoinflammatory and autoimmune disorders, suggesting a potential role for NADPH oxidase in regulating adaptive immune responses. Here, NADPH oxidase function in antigen processing and presentation is reviewed. NADPH oxidase influences dendritic cell (DC crosspresentation by major histocompatibility complex class I molecules (MHC-I through regulation of the phagosomal microenvironment, while in B lymphocytes, NADPH oxidase alters epitope selection by major histocompatibility complex class II molecules (MHC-II.

  13. Method and apparatus for coherent burst ranging

    Science.gov (United States)

    Wachter, E.A.; Fisher, W.G.

    1998-04-28

    A high resolution ranging method is described utilizing a novel modulated waveform, hereafter referred to as coherent burst modulation. In the coherent burst method, high frequency modulation of an acoustic or electromagnetic transmitter, such as a laser, is performed at a modulation frequency. This modulation frequency is transmitted quasi-continuously in the form of interrupted bursts of radiation. Energy from the transmitter is directed onto a target, interacts with the target, and the returning energy is collected. The encoded burst pattern contained in the collected return signal is detected coherently by a receiver that is tuned so as to be principally sensitive to the modulation frequency. The receiver signal is processed to determine target range using both time-of-flight of the burst envelope and phase shift of the high frequency modulation. This approach effectively decouples the maximum unambiguous range and range resolution relationship of earlier methods, thereby allowing high precision ranging to be conducted at arbitrarily long distances using at least one burst of encoded energy. The use of a receiver tuned to the high frequency modulation contained within the coherent burst vastly improves both sensitivity in the detection of the target return signal and rejection of background interferences, such as ambient acoustic or electromagnetic noise. Simultaneous transmission at several energies (or wavelengths) is possible by encoding each energy with a separate modulation frequency or pattern; electronic demodulation at the receiver allows the return pattern for each energy to be monitored independently. Radial velocity of a target can also be determined by monitoring change in phase shift of the return signal as a function of time. 12 figs.

  14. Efficient inhibition of bursts by bursts in the auditory system of crickets.

    Science.gov (United States)

    Marsat, G; Pollack, G S

    2007-06-01

    In crickets, auditory information about ultrasound is carried bilaterally to the brain by the AN2 neurons. The ON1 neuron provides contralateral inhibitory input to AN2, thereby enhancing bilateral contrast between the left and right AN2s, an important cue for sound localization. We examine how the structures of the spike trains of these neurons affect this inhibitory interaction. As previously shown for AN2, ON1 responds to salient peaks in stimulus amplitude with bursts of spikes. Spike bursts, but not isolated spikes, reliably signal the occurrence of specific features of the stimulus. ON1 and AN2 burst at similar times relative to the amplitude envelope of the stimulus, and bursts are more tightly time-locked to stimulus feature than the isolated spikes. As a consequence, spikes that, in the absence of contralateral inhibition, would occur within AN2 bursts are more likely to be preceded by spikes in ON1 (mainly also in bursts) than are isolated AN2 spikes. This leads to a large decrease in the burst rate of the inhibited AN2. We conclude that the match in coding properties of ON1 and AN2 allows contralateral inhibition to be most efficient for those portions of the response that carry the behaviourally relevant information, i.e. for bursts.

  15. Alternative Splicing and Differential Expression of Two Transcripts of Nicotine Adenine Dinucleotide Phosphate Oxidase B Gene from Zea mays

    Institute of Scientific and Technical Information of China (English)

    Fan Lin; Yun Zhang; Ming-Yi Jiang

    2009-01-01

    With the exception of rice, little is known about the existence of respiratory burst oxidase homolog (rboh) gene in cereals. The present study reports the cloning and analysis of a novel rboh gene, termed ZmrbohB, from maize (Zea mays L.). The full-length cDNA of ZmrbohB encodes a 942 amino acid protein containing all of the respiratory burst oxidase homolog catalytically critical motifs.Altemative splicing of ZmrbohB has generated two transcript isoforms, ZmrbohB-α and -β. Spliced transcript ZmrbohB-β retains an unspliced intron 11 that carries a premature termination codon and probably leads to nonsense-mediated mRNA decay. Expression analysis showed that two splice isoforms were differentially expressed in various tissues and at different developmental stages, and the major product was ZmrbohB-α. The transcripts of ZmrbohB-α accumulated markedly when the maize seedlings were subjected to various abiotic stimuli, such as wounding, cold (4℃), heat (40℃), UV and salinity stress. In addition, several abiotic stimuli also affected the alternative splicing pattern of ZmrbohB except wounding. These results provide new insight into roles in the expression regulation of plant rboh genes and suggest that ZmrbohB gene may play a role in response to environmental stresses.

  16. A new burst assembly technique for supporting QoS in optical burst switching networks

    Institute of Scientific and Technical Information of China (English)

    Xiaolong Yang(阳小龙); Mingrui Dang(党明瑞); Youju Mao(毛幼菊); Lemin Li(李乐民)

    2003-01-01

    This letter proposes a new burst assembly technique for supporting QoS in optical burst switching (OBS)networks. It consists of the adaptive-threshold burst assembly mechanism and QoS-based random offset-time scheme. The assembly mechanism, which is fit well to multi-class burst assembly, not only matcheswith IP QoS mechanism based on packet classification, and also utilizes fairly and efficiently assemblycapacity. Based on token-bucket model and burst segment selective discard (BSSD), the offset-time schemecan smooth the traffic to support OBS QoS. The simulation results show that the technique can improvethe performance in terms of packet loss probability (PLP).

  17. An Intelligent Segmented Burst Assembly Mechanism in Optical Burst Switching Networks

    Institute of Scientific and Technical Information of China (English)

    XIE Yi-Yuan; ZHANG Jian-Guo

    2008-01-01

    We focus on the burst assembly mechanism and propose a new intelligent method in which the burst is assembled from several internet protocol (IP) packets in which the number of IP packets is changed according to the traffic load and the burst is segmented into several parts, called the ISOBS mechanism. The average burst assembly time of the ISOBS mechanism decreases as compared with the fixed-assembly-time and fixed-assembly-time-and-length mechanisms. The loss ratio decreases 50% as compared with the general optical burst switching (OBS) mechanism. The last segment can carry high quality of service (QOS) information. We can achieve that the loss ratio of the last segment is almost zero when the traffic load is less than 0.05. When the traffic load is 0.9, the loss ratio of the last segment is 0.0041. The ISOBS can support to transmit different QOS data.

  18. Bursting synchronization in clustered neuronal networks

    Institute of Scientific and Technical Information of China (English)

    Yu Hai-Tao; Wang Jiang; Deng Bin; Wei Xi-Le

    2013-01-01

    Neuronal networks in the brain exhibit the modular (clustered) property,i.e.,they are composed of certain subnetworks with differential internal and external connectivity.We investigate bursting synchronization in a clustered neuronal network.A transition to mutual-phase synchronization takes place on the bursting time scale of coupled neurons,while on the spiking time scale,they behave asynchronously.This synchronization transition can be induced by the variations of inter-and intracoupling strengths,as well as the probability of random links between different subnetworks.Considering that some pathological conditions are related with the synchronization of bursting neurons in the brain,we analyze the control of bursting synchronization by using a time-periodic external signal in the clustered neuronal network.Simulation results show a frequency locking tongue in the driving parameter plane,where bursting synchronization is maintained,even in the presence of external driving.Hence,effective synchronization suppression can be realized with the driving parameters outside the frequency locking region.

  19. Diagnostics From Three Rising Submillimeter Bursts

    CERN Document Server

    Zhou, Ai-Hua; Wang, Xin-Dong

    2015-01-01

    In the paper we investigate three novel rising submillimeter (THz) bursts occurred sequentially in a super-Active Region NOAA 10486. The average rising rate of the flux density above 200 GHz is only 20 sfu/GHz (corresponding spectral index $\\alpha$ of 1.6) for the THz spectral components of 2003 October 28 and November 4 bursts, while it can attain values of 235 sfu/GHz ($\\alpha$=4.8) for 2003 November 2 burst. The steeply rising THz spectrum can be produced by a population of high relativistic electrons with a low-energy cutoff of 1 MeV , while it only requires a low-energy cutoff of 30 keV for the two slowly rising THz bursts, via gyrosynchrotron (GS) radiation based on our numerical simulations of burst spectra in the magnetic dipole field case. The electron density variation is much larger in the THz source than that in microwave (MW) one. It is interesting that the THz source radius decreased by 20--50$\\%$ during the decay phase for the three events, but the MW one increased by 28$\\%$ for the 2003 Novemb...

  20. Olivary subthreshold oscillations and burst activity revisited

    Directory of Open Access Journals (Sweden)

    Paolo eBazzigaluppi

    2012-11-01

    Full Text Available The inferior olive forms one of the major gateways for information that travels to the cerebellar cortex. Olivary neurons process sensory and motor signals that are subsequently relayed to Purkinje cells. The intrinsic subthreshold membrane potential oscillations of the olivary neurons are thought to be important for gating this flow of information. In vitro studies have revealed that the phase of the subthreshold oscillation determines the size of the olivary burst and may gate the information flow or encode the temporal state of the olivary network. Here, we investigated whether the same phenomenon occurred in murine olivary cells in an intact olivocerebellar system using the in vivo whole-cell recording technique. Our in vivo findings revealed that the number of wavelets within the olivary burst did not encode the timing of the spike relative to the phase of the oscillation but was related to the amplitude of the oscillation. Manipulating the oscillation amplitude by applying Harmaline confirmed the inverse relationship between the amplitude of oscillation and the number of wavelets within the olivary burst. Furthermore, we demonstrated that electrotonic coupling between olivary neurons affect this modulation of the olivary burst size. Based on these results, we suggest that the olivary burst size might reflect the expectancy of a spike to occur rather than the spike timing, and that this process requires the presence of gap junction coupling.

  1. The Cosmic Gamma-Ray Bursts

    CERN Document Server

    Djorgovski, S G; Kulkarni, S R; Sari, R; Bloom, J S; Galama, T J; Harrison, F A; Price, P A; Fox, D; Reichart, D; Yost, S; Berger, E; Diercks, A H; Goodrich, R; Chaffee, F H

    2001-01-01

    Cosmic gamma-ray bursts are one of the great frontiers of astrophysics today. They are a playground of relativists and observers alike. They may teach us about the death of stars and the birth of black holes, the physics in extreme conditions, and help us probe star formation in the distant and obscured universe. In this review we summarise some of the remarkable progress in this field over the past few years. While the nature of the GRB progenitors is still unsettled, it now appears likely that at least some bursts originate in explosions of very massive stars, or at least occur in or near the regions of massive star formation. The physics of the burst afterglows is reasonably well understood, and has been tested and confirmed very well by the observations. Bursts are found to be beamed, but with a broad range of jet opening angles; the mean gamma-ray energies after the beaming corrections are ~ 10^51 erg. Bursts are associated with faint ~ 25 mag) galaxies at cosmological redshifts, with ~ 1. The host gal...

  2. Meteor burst in the post 2000 era

    Science.gov (United States)

    Marriott, C.; Oduol, V.; Ghosh, A.; Tailor, B.

    In recent years a renewed interest has been shown in the possibility of using meteor burst links in tactical communications, both for networking and covert operations. Some of the applications that recent performance improvements would permit are evaluated. In evaluating the feasibility of a meteor burst implementation, certain technical and physical limitations are addressed. For the success of these applications, interoperability with other communication systems is necessary. The level of interoperability with other media, and the standards necessary to assure this interoperability are examined. Methods of minimizing and combating jamming are proposed. Meteor burst systems can be used in a large number of applications within a tactical environment. The principal disadvantage of the meteor burst medium is the problem of interference to other spectrum users from the probe end, and the interference from other users at the receiver end. The low throughput characteristic of meteor burst compares with some of the channel capacities used in other systems. Interoperability with other networks or communications links is relatively easy if certain straightforward protocols and standards are established.

  3. GRB Catalog: Bursts from Vela to Swift

    Science.gov (United States)

    Angelini, L.

    2008-01-01

    Gamma ray burst (GRB) astronomy started when the first event was recorded on July 2, 1967 by Vela 4a and 4b. Since then many missions have flown experiments capable of detecting GRBs. The events collected by these older experiments are mostly available in paper copy, each containing a few ten to a few hundred bursts. No systematic effort in cataloging of these bursts has been available. In some cases the information is unpublished and in others difficult to retrieve. The first major GRB catalog was obtained by GRO with the BATSE experiment. It contains more than 2000 bursts and includes homogeneous information for each of the bursts. With the launch of Swift, the first Gamma-ray/X-ray mission dedicated to the study of GRBs and their afterglows, a wealth of information is collected by the Swift instrument as well as from ground-based telescopes. This talk will describe the efforts to create a comprehensive GRBCAT and its current status and future prospective.

  4. Identification of crucial amino acids in mouse aldehyde oxidase 3 that determine substrate specificity.

    Directory of Open Access Journals (Sweden)

    Martin Mahro

    Full Text Available In order to elucidate factors that determine substrate specificity and activity of mammalian molybdo-flavoproteins we performed site directed mutagenesis of mouse aldehyde oxidase 3 (mAOX3. The sequence alignment of different aldehyde oxidase (AOX isoforms identified variations in the active site of mAOX3 in comparison to other AOX proteins and xanthine oxidoreductases (XOR. Based on the structural alignment of mAOX3 and bovine XOR, differences in amino acid residues involved in substrate binding in XORs in comparison to AOXs were identified. We exchanged several residues in the active site to the ones found in other AOX homologues in mouse or to residues present in bovine XOR in order to examine their influence on substrate selectivity and catalytic activity. Additionally we analyzed the influence of the [2Fe-2S] domains of mAOX3 on its kinetic properties and cofactor saturation. We applied UV-VIS and EPR monitored redox-titrations to determine the redox potentials of wild type mAOX3 and mAOX3 variants containing the iron-sulfur centers of mAOX1. In addition, a combination of molecular docking and molecular dynamic simulations (MD was used to investigate factors that modulate the substrate specificity and activity of wild type and AOX variants. The successful conversion of an AOX enzyme to an XOR enzyme was achieved exchanging eight residues in the active site of mAOX3. It was observed that the absence of the K889H exchange substantially decreased the activity of the enzyme towards all substrates analyzed, revealing that this residue has an important role in catalysis.

  5. Xanthine oxidase biosensor for monitoring meat spoilage

    Science.gov (United States)

    Vanegas, D. C.; Gomes, C.; McLamore, E. S.

    2014-05-01

    In this study, we have designed an electrochemical biosensor for real-time detection of specific biomarkers of bacterial metabolism related to meat spoilage (hypoxanthine and xanthine). The selective biosensor was developed by assembling a `sandwich' of nanomaterials and enzymes on a platinum-iridium electrode (1.6 mm tip diameter). The materials deposited on the sensor tip include amorphous platinum nanoclusters (i.e. Pt black), reduced graphene oxide, nanoceria, and xanthine oxidase. Xanthine oxidase was encapsulated in laponite hydrogel and used for the biorecognition of hypoxanthine and xanthine (two molecules involved in the rotting of meat by spoilage microorganisms). The developed biosensor demonstrated good electrochemical performance toward xanthine with sensitivity of 2.14 +/- 1.48 μA/mM, response time of 5.2 +/- 1.5 sec, lower detection limit of 150 +/- 39 nM, and retained at least 88% of its activity after 7 days of continuous use.

  6. Plasma diamine oxidase activity in asthmatic children

    Directory of Open Access Journals (Sweden)

    Kyoichiro Toyoshima

    1996-01-01

    Full Text Available Histamine plays an important role in the development of asthmatic symptoms. Diamine oxidase (DAO histaminase, which inactivates histamine, is located in the intestine and kidney and is released into plasma. Plasma DAO activity in asthmatic children was measured by a recently developed high performance liquid chromatographic method using histamine as the DAO substrate. Diamine oxidase activity was higher in severely asthmatic children than in those with mild asthma. A time course study during the acute exacerbation phase revealed that DAO activity rose during acute asthmatic attacks and then decreased gradually over several days. Although the mechanisms of plasma DAO activity increase during acute asthmatic attacks could not be explained, data showed that plasma DAO activity is an important index of histamine metabolism in asthmatics and may relate to some mechanisms of acute exacerbation of airway inflammation. Consequently, fluctuations in plasma DAO can be used as one of various indices of instability in management of asthma.

  7. Characterization of polyphenol oxidase from plants

    Institute of Scientific and Technical Information of China (English)

    LEI Dongfeng; FENG Yi; JIANG Dazong

    2004-01-01

    Polyphenol oxidase (PPO) which can mediate browning reaction is a bifunctional copper-containing enzyme encoded by plant nucleolus gene. It usually leads to excessive browning reaction which reduces the coercial profits of fruits and vegetables. In this paper, PPO genes and enzymes in plants are characterized systematically, and the latest progress is reviewed. Some clonings of PPOs genes are reported; the specific temporal and spatial expression pattern of PPOs genes is described; the model of the structure of the precursor form of catechol oxidase is introduced; the possible functions of PPOs in defending against pathogen, wounding, surrounding stress and other inducing factors are demonstrated; the induction and activation of latent PPOs in some plants is elucidated; the scheme of browning inhibition by L-cysteine is clarified; the mechanism of suicide inhibition of latent PPO and kinetic synergism are established. Furthermore, the area for future study is also discussed.

  8. Identification and cloning of a sequence homologue of dopamine β-hydroxylase

    NARCIS (Netherlands)

    Chambers, Kaylene J.; Tonkin, Leath A.; Chang, Edwin; Shelton, Dawne N.; Linskens, Maarten H.; Funk, Walter D.

    1998-01-01

    We have identified and cloned a cDNA encoding a new member of the monooxygenase family of enzymes. This novel enzyme, which we call MOX (monooxygenase X; unknown substrate) is a clear sequence homologue of the enzyme dopamine β-hydroxylase (DBH). MOX maintains many of the structural features of DBH,

  9. Structure of HLA-A*1101 in complex with a hepatitis B peptide homologue

    DEFF Research Database (Denmark)

    Blicher, Thomas; Kastrup, Jette Sandholm; Pedersen, Lars Østergaard

    2006-01-01

    A high-resolution structure of the human MHC-I molecule HLA-A*1101 is presented in which it forms a complex with a sequence homologue of a peptide that occurs naturally in hepatitis B virus DNA polymerase. The sequence of the bound peptide is AIMPARFYPK, while that of the corresponding natural...

  10. The actin homologue MreB organizes the bacterial cell membrane

    NARCIS (Netherlands)

    Strahl, H.; Burmann, F.; Hamoen, L.W.

    2014-01-01

    The eukaryotic cortical actin cytoskeleton creates specific lipid domains, including lipid rafts, which determine the distribution of many membrane proteins. Here we show that the bacterial actin homologue MreB displays a comparable activity. MreB forms membrane-associated filaments that coordinate

  11. Identification of Plant Homologues of Dual Specificity Yak1-Related Kinases

    Directory of Open Access Journals (Sweden)

    Pavel Karpov

    2014-01-01

    Full Text Available Currently, Dual Specificity YAK1-Related Kinases (MNB/DYRK were found in slime molds, protista, fungi, and animals, but the existence of plant homologues is still unclear. In the present study, we have identified 14 potential plant homologues with the previously unknown functions, based on the strong sequence similarity. The results of bioinformatics analysis revealed their correspondence to DYRK1A, DYRK1B, DYRK3, and DYRK4. For two plant homologues of animal DYRK1A from Physcomitrella patens and Arabidopsis thaliana spatial structures of catalytic domains were predicted, as well as their complexes with ADP and selective inhibitor d15. Comparative analysis of 3D-structures of the human DYRK1A and plant homologues, their complexes with the specific inhibitors, and results of molecular dynamics confirm their structural and functional similarity with high probability. Preliminary data indicate the presence of potential MNB/DYRK specific phosphorylation sites in such proteins associated with plant cytoskeleton as plant microtubule-associated proteins WVD2 and WDL1, and FH5 and SCAR2 involved in the organization and polarity of the actin cytoskeleton and some kinesin-like microtubule motor proteins.

  12. Congenital sideroblastic anemia due to mutations in the mitochondrial HSP70 homologue HSPA9

    DEFF Research Database (Denmark)

    Schmitz-Abe, Klaus; Ciesielski, Szymon J; Schmidt, Paul J

    2015-01-01

    The congenital sideroblastic anemias (CSAs) are relatively uncommon diseases, characterized by defects in mitochondrial heme synthesis, iron-sulfur cluster (Fe-S) biogenesis, or protein synthesis. Here we demonstrate that mutations in HSPA9, a mitochondrial HSP70 homologue located in the 5q...

  13. The Retention Behaviors of Benzene and Its Alkyl Homologues in Microemulsion Electrokinetic Chromatography

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    The retention behaviors of benzene and its alkyl homologues in microemulsion electrokinetic chromatography were investigated in both anionic and cationic surfactant MEEKC systems. The effects of the composition of microemulsion on retention time and selectivity were studied. A good linear relationship was obtained between log k' and the carbon number of alkyl chain.

  14. Arabidopsis homologues of the autophagy protein Atg8 are a novel family of microtubule binding proteins

    NARCIS (Netherlands)

    Ketelaar, T.; Voss, C.; Dimmock, S.A.; Thumm, M.; Hussey, P.J.

    2004-01-01

    Autophagy is the non-selective transport of proteins and superfluous organelles destined for degradation to the vacuole in fungae, or the lysosome in animal cells. Some of the genes encoding components of the autophagy pathway are conserved in plants, and here we show that Arabidopsis homologues of

  15. Process characterization of a monoamine oxidase

    DEFF Research Database (Denmark)

    Ramesh, Hemalata; Woodley, John

    2014-01-01

    .e, on biocatalyst development (e.g. improvement of expression levels), process development (e.g. improved oxygen supply, product removal strategies) or biocatalyst stabilization (e.g. through immobilization or directed evolution). This paper presents a systematic method to identify the bottleneck of a potential...... biocatalytic process using a monoamine oxidase to synthesise an intermediate in the manufacture of a drug for treating Hepatitis C (Telaprevir)....

  16. Imaging Monoamine Oxidase in the Human Brain

    Energy Technology Data Exchange (ETDEWEB)

    Fowler, J. S.; Volkow, N. D.; Wang, G-J.; Logan, Jean

    1999-11-10

    Positron emission tomography (PET) studies mapping monoamine oxidase in the human brain have been used to measure the turnover rate for MAO B; to determine the minimum effective dose of a new MAO inhibitor drug lazabemide and to document MAO inhibition by cigarette smoke. These studies illustrate the power of PET and radiotracer chemistry to measure normal biochemical processes and to provide information on the effect of drug exposure on specific molecular targets.

  17. The inhibition of monoamine oxidase by esomeprazole

    OpenAIRE

    2013-01-01

    Virtual screening of a library of drugs has suggested that esomeprazole, the S-enantiomer of omeprazole, may possess binding affinities for the active sites of the monoamine oxidase (MAO) A and B enzymes. Based on this finding, the current study examines the MAO inhibitory properties of esomeprazole. Using recombinant human MAO-A and MAO-B, IC50 values for the inhibition of these enzymes by esomeprazole were experimentally determined. To examine the reversibility of MAO inhibition by esomepra...

  18. X-ray bursts observed with JEM-X

    DEFF Research Database (Denmark)

    Brandt, Søren Kristian; Chenevez, Jérôme; Lund, Niels;

    2006-01-01

    We report on the search for X-ray bursts in the JEM-X X-ray monitor on INTEGRAL during the first two years of operations. More than 350 bursts from 25 different type-I X-ray burst sources were found.......We report on the search for X-ray bursts in the JEM-X X-ray monitor on INTEGRAL during the first two years of operations. More than 350 bursts from 25 different type-I X-ray burst sources were found....

  19. Arc burst pattern analysis fault detection system

    Science.gov (United States)

    Russell, B. Don (Inventor); Aucoin, B. Michael (Inventor); Benner, Carl L. (Inventor)

    1997-01-01

    A method and apparatus are provided for detecting an arcing fault on a power line carrying a load current. Parameters indicative of power flow and possible fault events on the line, such as voltage and load current, are monitored and analyzed for an arc burst pattern exhibited by arcing faults in a power system. These arcing faults are detected by identifying bursts of each half-cycle of the fundamental current. Bursts occurring at or near a voltage peak indicate arcing on that phase. Once a faulted phase line is identified, a comparison of the current and voltage reveals whether the fault is located in a downstream direction of power flow toward customers, or upstream toward a generation station. If the fault is located downstream, the line is de-energized, and if located upstream, the line may remain energized to prevent unnecessary power outages.

  20. A mechanism for fast radio bursts

    CERN Document Server

    Romero, Gustavo E; Vieyro, Florencia L

    2015-01-01

    Fast radio bursts are mysterious transient sources likely located at cosmological distances. The derived brightness temperatures exceed by many orders of magnitude the self-absorption limit of incoherent synchrotron radiation, implying the operation of a coherent emission process. We propose a radiation mechanism for fast radio bursts where the emission arises from collisionless Bremsstrahlung in strong plasma turbulence excited by relativistic electron beams. We discuss possible astrophysical scenarios in which this process might operate. The emitting region is a turbulent plasma hit by a relativistic jet, where Langmuir plasma waves produce a concentration of intense electrostatic soliton-like regions (cavitons). The resulting radiation is coherent and, under some physical conditions, can be polarised and have a power-law distribution in energy. We obtain radio luminosities in agreement with the inferred values for fast radio bursts. The timescale of the radio flare in some cases can be extremely fast, of t...

  1. Study on fault induced rock bursts

    Institute of Scientific and Technical Information of China (English)

    LI Zhi-hua; DOU Lin-ming; LU Cai-ping; MU Zong-long; CAO An-ye

    2008-01-01

    In order to study the rules of rock bursts caused by faults by means of mechanical analysis of a roof rock-mass balanced structure and numerical simulation about fault slip destabilization, the effect of coal mining operation on fault plane stresses and slip displacement were studied. The results indicate that the slip displacement sharply increases due to the decrease of normal stress and the increase of shear stress at the fault plane when the working face advances from the footwall to the fault itself, which may induce a fault rock burst. However, this slip displacement will be very small due to the increase of normal stress and the decrease of shear stress when the working face advances from the hanging wall to the fault itself, which results in a very small risk of a fault rock burst.

  2. On the bursting of gene products

    CERN Document Server

    Yvinec, Romain

    2011-01-01

    In this article we demonstrate that the so-called bursting production of molecular species during gene expression may be an artifact caused by low time resolution in experimental data collection and not an actual burst in production. We reach this conclusion through an analysis of a two-stage and binary model for gene expression, and demonstrate that in the limit when mRNA degradation is much faster than protein degradation they are equivalent. The negative binomial distribution is shown to be a limiting case of the binary model for fast "on to off" state transitions and high values of the ratio between protein synthesis and degradation rates. The gene products population increases by unity but multiple times in a time interval orders of magnitude smaller than protein half-life or the precision of the experimental apparatus employed in its detection. This rare-and-fast one-by-one protein synthesis has been interpreted as bursting.

  3. Variable protostellar accretion with episodic bursts

    CERN Document Server

    Vorobyov, Eduard I

    2015-01-01

    We present the latest development of the disk gravitational instability and fragmentation model, originally introduced by us to explain episodic accretion bursts in the early stages of star formation. Using our numerical hydrodynamics model with improved disk thermal balance and star-disk interaction, we computed the evolution of protostellar disks formed from the gravitational collapse of prestellar cores. In agreement with our previous studies, we find that cores of higher initial mass and angular momentum produce disks that are more favorable to gravitational instability and fragmentation, while a higher background irradiation and magnetic fields moderate the disk tendency to fragment. The protostellar accretion in our models is time-variable, thanks to the nonlinear interaction between different spiral modes in the gravitationally unstable disk, and can undergo episodic bursts when fragments migrate onto the star owing to the gravitational interaction with other fragments or spiral arms. Most bursts occur...

  4. Gamma-Ray Bursts: A Radio Perspective

    Directory of Open Access Journals (Sweden)

    Poonam Chandra

    2016-01-01

    Full Text Available Gamma-ray bursts (GRBs are extremely energetic events at cosmological distances. They provide unique laboratory to investigate fundamental physical processes under extreme conditions. Due to extreme luminosities, GRBs are detectable at very high redshifts and potential tracers of cosmic star formation rate at early epoch. While the launch of Swift and Fermi has increased our understanding of GRBs tremendously, many new questions have opened up. Radio observations of GRBs uniquely probe the energetics and environments of the explosion. However, currently only 30% of the bursts are detected in radio bands. Radio observations with upcoming sensitive telescopes will potentially increase the sample size significantly and allow one to follow the individual bursts for a much longer duration and be able to answer some of the important issues related to true calorimetry, reverse shock emission, and environments around the massive stars exploding as GRBs in the early Universe.

  5. Bursting activity spreading through asymmetric interactions

    CERN Document Server

    Onaga, Tomokatsu

    2014-01-01

    People communicate with those who have the same background or share a common interest by using a social networking service (SNS). News or messages propagate through inhomogeneous connections in an SNS by sharing or facilitating additional comments. Such human activity is known to lead to endogenous bursting in the rate of message occurrences. We analyze a multi-dimensional self-exciting process to reveal dependence of the bursting activity on the topology of connections and the distribution of interaction strength on the connections. We determine the critical conditions for the cases where interaction strength is regulated at either the point of input or output for each person. In the input regulation condition, the network may exhibit bursting with infinitesimal interaction strength, if the dispersion of the degrees diverges as in the scale-free networks. In contrast, in the output regulation condition, the critical value of interaction strength, represented by the average number of events added by a single ...

  6. Gamma-Ray Burst Early Afterglows

    CERN Document Server

    Zhang, B

    2005-01-01

    The successful launch and operation of NASA's Swift Gamma-Ray Burst Explorer open a new era for the multi-wavelength study of the very early afterglow phase of gamma-ray bursts (GRBs). GRB early afterglow information is essential to explore the unknown physical composition of GRB jets, the link between the prompt gamma-ray emission and the afterglow emission, the GRB central engine activity, as well as the immediate GRB environment. Here I review some of the recent theoretical efforts to address these problems and describe how the latest Swift data give answers to these outstanding questions.

  7. Distribution of whistler mode bursts at Venus

    Science.gov (United States)

    Scarf, F. L.; Jordan, K. F.; Russell, C. T.

    1987-01-01

    Several thousand impulsive whistler mode noise bursts were detected by the Pioneer Venus wave instrument during the first 10 seasons with nightside traversals at low altitudes. The altitude distribution for these events shows that essentially all of the bursts were detected when the orbiter was less than 2000 km above the planet, suggesting that the varying plasma conditions could not maintain coherent whistler mode field-aligned guidance over greater distances. Within the 2000-km range, the distribution of the number of events versus altitude shows that there are two distinct subregions. These results are interpreted in terms of two types of whistler mode propagation from sources below the ionosphere.

  8. A Burst Chasing X-ray Polarimeter

    Science.gov (United States)

    Hill, Joanne

    2007-01-01

    This viewgraph presentation reviews the rationale, design, and importance of an X-Ray Polarimeter. There is a brief discussion of Gamma Ray Bursts, followed by a review of the theories of Gamma-Ray Bursts Polarization. This leads to the question of "How do we measure the polarization?" and a discussion of the GRB x-ray emission, the photoelectric effect and photoelectric polarimetry. The requirements for the work, can only be approached using a gas detector. This leads to a discussion of a Micropattern Gas Polarimeter, and the Time-Projection Chamber (TPC) X-ray Polarimeter.

  9. The Integral Burst Alert System (IBAS)

    CERN Document Server

    Mereghetti, S; Borkowski, J J; Walter, R; Pedersen, H

    2003-01-01

    We describe the INTEGRAL Burst Alert System (IBAS): the automatic software for the rapid distribution of the coordinates of the Gamma-Ray Bursts detected by INTEGRAL. IBAS is implemented as a ground based system, working on the near-real time telemetry stream. During the first six months of operations, six GRB have been detected in the field of view of the INTEGRAL instruments and localized by IBAS. Positions with an accuracy of a few arcminutes are currently distributed by IBAS to the community for follow-up observations within a few tens of seconds of the event.

  10. Supernovae and Gamma-Ray Bursts

    Science.gov (United States)

    Livio, Mario; Panagia, Nino; Sahu, Kailash

    2001-07-01

    Participants; Preface; Gamma-ray burst-supernova relation B. Paczynski; Observations of gamma-ray bursts G. Fishman; Fireballs T. Piran; Gamma-ray mechanisms M. Rees; Prompt optical emission from gamma-ray bursts R. Kehoe, C. Akerlof, R. Balsano, S. Barthelmy, J. Bloch, P. Butterworth, D. Casperson, T. Cline, S. Fletcher, F. Frontera, G. Gisler, J. Heise, J. Hills, K. Hurley, B. Lee, S. Marshall, T. McKay, A. Pawl, L. Piro, B. Priedhorsky, J. Szymanski and J. Wren; X-ray afterglows of gamma-ray bursts L. Piro; The first year of optical-IR observations of SN1998bw I. Danziger, T. Augusteijn, J. Brewer, E. Cappellaro, V. Doublier, T. Galama, J. Gonzalez, O. Hainaut, B. Leibundgut, C. Lidman, P. Mazzali, K. Nomoto, F. Patat, J. Spyromilio, M. Turatto, J. Van Paradijs, P. Vreeswijk and J. Walsh; X-ray emission of Supernova 1998bw in the error box of GRB980425 E. Pian; Direct analysis of spectra of type Ic supernovae D. Branch; The interaction of supernovae and gamma-ray bursts with their surroundings R. Chevalier; Magnetars, soft gamma-ray repeaters and gamma-ray bursts A. Harding; Super-luminous supernova remnants Y. -H. Chu, C. -H. Chen and S. -P. Lai; The properties of hypernovae: SNe Ic 1998bw, 1997ef, and SN IIn 1997cy K. Nomoto, P. Mazzali, T. Nakamura, K. Iwanmoto, K. Maeda, T. Suzuki, M. Turatto, I. Danziger and F. Patat; Collapsars, Gamma-Ray Bursts, and Supernovae S. Woosley, A. MacFadyen and A. Heger; Pre-supernova evolution of massive stars N. Panagia and G. Bono; Radio supernovae and GRB 980425 K. Weiler, N. Panagia, R. Sramek, S. Van Dyk, M. Montes and C. Lacey; Models for Ia supernovae and evolutionary effects P. Hoflich and I. Dominguez; Deflagration to detonation A. Khokhlov; Universality in SN Iae and the Phillips relation D. Arnett; Abundances from supernovae F. -K. Thielemann, F. Brachwitz, C. Freiburghaus, S. Rosswog, K. Iwamoto, T. Nakamura, K. Nomoto, H. Umeda, K. Langanke, G. Martinez-Pinedo, D. Dean, W. Hix and M. Strayer; Sne, GRBs, and the

  11. Phantom bursting is highly sensitive to noise and unlikely to account for slow bursting in beta-cells

    DEFF Research Database (Denmark)

    Pedersen, Morten Gram

    2007-01-01

    Pancreatic beta-cells show bursting electrical activity with a wide range of burst periods ranging from a few seconds, often seen in isolated cells, over tens of seconds (medium bursting), usually observed in intact islets, to several minutes. The phantom burster model [Bertram, R., Previte, J...... and lowers the burst period dramatically in phantom bursters. It is therefore unlikely that slow bursting in single cells is driven by the slow phantom bursting mechanism, but could instead be driven by oscillations in glycolysis, which we show are stable to random ion channel fluctuations. Moreover, so...

  12. Adipogenesis-related increase of semicarbazide-sensitive amine oxidase and monoamine oxidase in human adipocytes.

    Science.gov (United States)

    Bour, Sandy; Daviaud, Danièle; Gres, Sandra; Lefort, Corinne; Prévot, Danielle; Zorzano, Antonio; Wabitsch, Martin; Saulnier-Blache, Jean-Sébastien; Valet, Philippe; Carpéné, Christian

    2007-08-01

    A strong induction of semicarbazide-sensitive amine oxidase (SSAO) has previously been reported during murine preadipocyte lineage differentiation but it remains unknown whether this emergence also occurs during adipogenesis in man. Our aim was to compare SSAO and monoamine oxidase (MAO) expression during in vitro differentiation of human preadipocytes and in adipose and stroma-vascular fractions of human fat depots. A human preadipocyte cell strain from a patient with Simpson-Golabi-Behmel syndrome was first used to follow amine oxidase expression during in vitro differentiation. Then, human preadipocytes isolated from subcutaneous adipose tissues were cultured under conditions promoting ex vivo adipose differentiation and tested for MAO and SSAO expression. Lastly, human adipose tissue was separated into mature adipocyte and stroma-vascular fractions for analyses of MAO and SSAO at mRNA, protein and activity levels. Both SSAO and MAO were increased from undifferentiated preadipocytes to lipid-laden cells in all the models: 3T3-F442A and 3T3-L1 murine lineages, human SGBS cell strain or human preadipocytes in primary culture. In human subcutaneous adipose tissue, the adipocyte-enriched fraction exhibited seven-fold higher amine oxidase activity and contained three- to seven-fold higher levels of mRNAs encoded by MAO-A, MAO-B, AOC3 and AOC2 genes than the stroma-vascular fraction. MAO-A and AOC3 genes accounted for the majority of their respective MAO and SSAO activities in human adipose tissue. Most of the SSAO and MAO found in adipose tissue originated from mature adipocytes. Although the mechanism and role of adipogenesis-related increase in amine oxidase expression remain to be established, the resulting elevated levels of amine oxidase activities found in human adipocytes may be of potential interest for therapeutic intervention in obesity.

  13. Mutations of SURF-1 in Leigh disease associated with cytochrome c oxidase deficiency.

    Science.gov (United States)

    Tiranti, V; Hoertnagel, K; Carrozzo, R; Galimberti, C; Munaro, M; Granatiero, M; Zelante, L; Gasparini, P; Marzella, R; Rocchi, M; Bayona-Bafaluy, M P; Enriquez, J A; Uziel, G; Bertini, E; Dionisi-Vici, C; Franco, B; Meitinger, T; Zeviani, M

    1998-12-01

    Leigh disease associated with cytochrome c oxidase deficiency (LD[COX-]) is one of the most common disorders of the mitochondrial respiratory chain, in infancy and childhood. No mutations in any of the genes encoding the COX-protein subunits have been identified in LD(COX-) patients. Using complementation assays based on the fusion of LD(COX-) cell lines with several rodent/human rho0 hybrids, we demonstrated that the COX phenotype was rescued by the presence of a normal human chromosome 9. Linkage analysis restricted the disease locus to the subtelomeric region of chromosome 9q, within the 7-cM interval between markers D9S1847 and D9S1826. Candidate genes within this region include SURF-1, the yeast homologue (SHY-1) of which encodes a mitochondrial protein necessary for the maintenance of COX activity and respiration. Sequence analysis of SURF-1 revealed mutations in numerous DNA samples from LD(COX-) patients, indicating that this gene is responsible for the major complementation group in this important mitochondrial disorder.

  14. Powerful Radio Burst Indicates New Astronomical Phenomenon

    Science.gov (United States)

    2007-09-01

    Astronomers studying archival data from an Australian radio telescope have discovered a powerful, short-lived burst of radio waves that they say indicates an entirely new type of astronomical phenomenon. Region of Strong Radio Burst Visible-light (negative greyscale) and radio (contours) image of Small Magellanic Cloud and area where burst originated. CREDIT: Lorimer et al., NRAO/AUI/NSF Click on image for high-resolution file ( 114 KB) "This burst appears to have originated from the distant Universe and may have been produced by an exotic event such as the collision of two neutron stars or the death throes of an evaporating black hole," said Duncan Lorimer, Assistant Professor of Physics at West Virginia University (WVU) and the National Radio Astronomy Observatory (NRAO). The research team led by Lorimer consists of Matthew Bailes of Swinburne University in Australia, Maura McLaughlin of WVU and NRAO, David Narkevic of WVU, and Fronefield Crawford of Franklin and Marshall College in Lancaster, Pennsylvania. The astronomers announced their findings in the September 27 issue of the online journal Science Express. The startling discovery came as WVU undergraduate student David Narkevic re-analyzed data from observations of the Small Magellanic Cloud made by the 210-foot Parkes radio telescope in Australia. The data came from a survey of the Magellanic Clouds that included 480 hours of observations. "This survey had sought to discover new pulsars, and the data already had been searched for the type of pulsating signals they produce," Lorimer said. "We re-examined the data, looking for bursts that, unlike the usual ones from pulsars, are not periodic," he added. The survey had covered the Magellanic Clouds, a pair of small galaxies in orbit around our own Milky Way Galaxy. Some 200,000 light-years from Earth, the Magellanic Clouds are prominent features in the Southern sky. Ironically, the new discovery is not part of these galaxies, but rather is much more distant

  15. Pathological changes in platelet histamine oxidases in atopic eczema

    Directory of Open Access Journals (Sweden)

    Reinhold Kiehl

    1993-01-01

    Full Text Available Increased plasma histamine levels were associated with significantly lowered diamine and type B monoamine oxidase activities in platelet-rich plasma of atopic eczema (AE patients. The diamine oxidase has almost normal cofactor levels (pyridoxal phosphate and Cu2+ but the cofactor levels for type B monoamine oxidase (flavin adenine dinucleotide and Fe2+ are lowered. The biogenic amines putrescine, cadaverine, spermidine, spermine, tyramine and serotonin in the sera, as well as dopamine and epinephrine in EDTA-plasma were found to be normal. It is unlikely, therefore, that these amines are responsible for the decreased activities of monoamine and diamine oxidase in these patients. The most likely causative factors for the inhibition of the diamine oxidase are nicotine, alcohol, food additives and other environmental chemicals, or perhaps a genetic defect of the diamine oxidase.

  16. Endocytosis is required for exocytosis and priming of respiratory burst activity in human neutrophils.

    Science.gov (United States)

    Creed, T Michael; Tandon, Shweta; Ward, Richard A; McLeish, Kenneth R

    2017-06-21

    Neutrophil generation of reactive oxygen species (ROS) is enhanced by exposure to pro-inflammatory agents in a process termed priming. Priming is depending on exocytosis of neutrophil granules and p47(phox) phosphorylation-dependent translocation of cytosolic NADPH oxidase components. Clathrin-mediated endocytosis was recently reported to be necessary for priming, but the mechanism linking endocytosis to priming was not identified. The present study examined the hypothesis that endocytosis regulates neutrophil priming by controlling granule exocytosis. Clathrin-mediated endocytosis by isolated human neutrophils was inhibited by chlorpromazine, monodansylcadaverine, and sucrose. Exocytosis of granule subsets was measured as release of granule components by ELISA or chemiluminescence. ROS generation was measured as extracellular release of superoxide as reduction of ferrocytochrome c. p38 MAPK activation and p47(phox) phosphorylation were measured by immunoblot analysis. Statistical analysis was performed using a one-way ANOVA with the Tukey-Kramer multiple-comparison test. Inhibition of endocytosis prevented priming of superoxide release by TNFα and inhibited TNFα stimulation and priming of exocytosis of all four granule subsets. Inhibition of endocytosis did not reduce TNFα-stimulated p38 MAPK activation or p47(phox) phosphorylation. Inhibition of NADPH oxidase activity blocked TNFα stimulation of secretory vesicle and gelatinase granule exocytosis. Endocytosis is linked to priming of respiratory burst activity through ROS-mediated control of granule exocytosis.

  17. Power Enhancement Cavity for Burst-Mode Laser Pulses

    Energy Technology Data Exchange (ETDEWEB)

    Liu, Yun [ORNL

    2015-01-01

    We demonstrate a novel optical cavity scheme and locking method that can realize the power enhancement of picosecond UV laser pulses operating at a burst mode with arbitrary burst (macropulse) lengths and repetition rates.

  18. THE FIVE YEAR FERMI/GBM MAGNETAR BURST CATALOG

    Energy Technology Data Exchange (ETDEWEB)

    Collazzi, A. C. [SciTec, Inc., 100 Wall Street, Princeton, NJ 08540 (United States); Kouveliotou, C.; Horst, A. J. van der; Younes, G. A. [Department of Physics, The George Washington University, 725 21st Street NW, Washington, DC 20052 (United States); Kaneko, Y.; Göğüş, E. [Sabancı University, Orhanlı-Tuzla, İstanbul 34956 (Turkey); Lin, L. [François Arago Centre, APC, 10 rue Alice Domon et Léonie Duquet, F-75205 Paris (France); Granot, J. [Department of Natural Sciences, The Open University of Israel, 1 University Road, P.O. Box 808, Raanana 43537 (Israel); Finger, M. H. [Universities Space Research Association, NSSTC, 320 Sparkman Drive, Huntsville, AL 35805 (United States); Chaplin, V. L. [School of Medicine, Vanderbilt University, 1161 21st Avenue S, Nashville, TN 37232 (United States); Huppenkothen, D. [Center for Data Science, New York University, 726 Broadway, 7th Floor, New York, NY 10003 (United States); Watts, A. L. [Anton Pannekoek Institute, University of Amsterdam, Postbus 94249, 1090 GE Amsterdam (Netherlands); Kienlin, A. von [Max-Planck-Institut für extraterrestrische Physik, Giessenbachstrasse 1, D-85748 Garching (Germany); Baring, M. G. [Department of Physics and Astronomy, Rice University, MS-108, P.O. Box 1892, Houston, TX 77251 (United States); Gruber, D. [Planetarium Südtirol, Gummer 5, I-39053 Karneid (Italy); Bhat, P. N. [CSPAR, University of Alabama in Huntsville, 320 Sparkman Drive, Huntsville, AL 35899 (United States); Gibby, M. H., E-mail: acollazzi@scitec.com [Jacobs Technology, Inc., Huntsville, AL (United States); and others

    2015-05-15

    Since launch in 2008, the Fermi Gamma-ray Burst Monitor (GBM) has detected many hundreds of bursts from magnetar sources. While the vast majority of these bursts have been attributed to several known magnetars, there is also a small sample of magnetar-like bursts of unknown origin. Here, we present the Fermi/GBM magnetar catalog, providing the results of the temporal and spectral analyses of 440 magnetar bursts with high temporal and spectral resolution. This catalog covers the first five years of GBM magnetar observations, from 2008 July to 2013 June. We provide durations, spectral parameters for various models, fluences, and peak fluxes for all the bursts, as well as a detailed temporal analysis for SGR J1550–5418 bursts. Finally, we suggest that some of the bursts of unknown origin are associated with the newly discovered magnetar 3XMM J185246.6+0033.7.

  19. The nature of CuA in cytochrome c oxidase

    OpenAIRE

    Stevens, Tom H.; Martin, Craig T.; Wang, Hsin; Brudvig, Gary W.; Scholes, Charles P.; Chan, Sunney I.

    1982-01-01

    The isolation and purification of yeast cytochrome c oxidase is described. Characterization of the purified protein indicates that it is spectroscopically identical with cytochrome c oxidase isolated from beef heart. Preparations of isotopically substituted yeast cytochrome c oxidase are obtained incorporating [1,3-15N2]histidine or [beta,beta- 2H2]cysteine. Electron paramagnetic resonance and electron nuclear double resonance spectra of the isotopically substituted proteins identify unambigu...

  20. Gamma-ray bursts at high redshift

    NARCIS (Netherlands)

    R.A.M.J. Wijers

    1999-01-01

    Gamma-ray bursts are much brighter than supernovae, and could therefore possibly probe the Universe to high redshift. The presently established GRB redshifts range from 0.83 to 5, and quite possibly even beyond that. Since most proposed mechanisms for GRB link them closely to deaths of massive stars

  1. Ceruloplasmin decreases respiratory burst reaction during pregnancy.

    Science.gov (United States)

    Varfolomeeva, Elena Y; Semenova, Elena V; Sokolov, Alexey V; Aplin, Kirill D; Timofeeva, Kseniya E; Vasilyev, Vadim B; Filatov, Michael V

    2016-08-01

    Testing of pregnant women reveals weakening of neutrophil-mediated effector functions, such as reactive oxygen species generation. This study provides data confirming the phenomenon, gained through application of the flow cytometry technique. Key factors influencing neutrophil functional activity in blood plasma of pregnant women have not been detected so far. At the same time, concentration of ceruloplasmin - a copper-containing glycoprotein - is known to increase in blood significantly during pregnancy. We observed the negative correlation between ceruloplasmin concentration in blood plasma of pregnant women and the intensity of respiratory burst of neutrophils. Fractionation of plasma using gel-filtration revealed that ceruloplasmin-containing fraction demonstrated suppression of the respiratory burst reaction. Partial elimination of ceruloplasmin from the blood of pregnant women, performed with the help of specific antibodies and followed by immunoprecipitation, leads to an increased respiratory burst reaction. On the contrary, addition of ceruloplasmin to blood samples of healthy donors noticeably decreases the respiratory burst reaction. The results presented prove that change in ceruloplasmin level in plasma is necessary and sufficient for modulating the ability of neutrophils to produce reactive oxygen species during pregnancy.

  2. Fast Radio Bursts: Searches, Sensitivities & Implications

    CERN Document Server

    Keane, E F

    2016-01-01

    Fast radio bursts (FRBs) are millisecond-duration transient signals discovered over the past decade. Here we describe the scientific usefulness of FRBs, consider ongoing work at the Parkes telescope, and examine some relevant search sensitivity and completeness considerations. We also look ahead to the results from ongoing and future planned studies in the field.

  3. Gamma-ray bursts at high redshift

    NARCIS (Netherlands)

    Wijers, R.A.M.J.

    1999-01-01

    Gamma-ray bursts are much brighter than supernovae, and could therefore possibly probe the Universe to high redshift. The presently established GRB redshifts range from 0.83 to 5, and quite possibly even beyond that. Since most proposed mechanisms for GRB link them closely to deaths of massive stars

  4. IPN localizations of Konus short gamma-ray bursts

    CERN Document Server

    Pal'shin, V D; Svinkin, D S; Aptekar, R L; Golenetskii, S V; Frederiks, D D; Mazets, E P; Oleynik, P P; Ulanov, M V; Cline, T; Mitrofanov, I G; Golovin, D V; Kozyrev, A S; Litvak, M L; Sanin, A B; Boynton, W; Fellows, C; Harshman, K; Trombka, J; McClanahan, T; Starr, R; Goldsten, J; Gold, R; Rau, A; von Kienlin, A; Savchenko, V; Smith, D M; Hajdas, W; Barthelmy, S D; Cummings, J; Gehrels, N; Krimm, H; Palmer, D; Yamaoka, K; Ohno, M; Fukazawa, Y; Hanabata, Y; Takahashi, T; Tashiro, M; Terada, Y; Murakami, T; Makishima, K; Briggs, M S; Kippen, R M; Kouveliotou, C; Meegan, C; Fishman, G; Connaughton, V; Boer, M; Guidorzi, C; Frontera, F; Montanari, E; Rossi, F; Feroci, M; Amati, L; Nicastro, L; Orlandini, M; Monte, Del; Costa, E; Donnarumma, I; Evangelista, Y; Lapshov, I; Lazzarotto, F; Pacciani, L; Rapisarda, M; Soffitta, P; Di Cocco, G; Fuschino, F; Galli, M; Labanti, C; Marisaldi, M; Atteia, J -L; Vanderspek, R; Ricker, G

    2013-01-01

    Between the launch of the GGS Wind spacecraft in 1994 November and the end of 2010, the Konus-Wind experiment detected 314 short-duration gamma-ray bursts (including 24 bursts which can be classified as short bursts with extended emission). During this period, the IPN consisted of up to eleven spacecraft, and using triangulation, the localizations of 276 bursts were obtained. We present the IPN localization data on these events.

  5. BurstMem: A High-Performance Burst Buffer System for Scientific Applications

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Teng [Auburn University, Auburn, Alabama; Oral, H Sarp [ORNL; Wang, Yandong [Auburn University, Auburn, Alabama; Settlemyer, Bradley W [ORNL; Atchley, Scott [ORNL; Yu, Weikuan [Auburn University, Auburn, Alabama

    2014-01-01

    The growth of computing power on large-scale sys- tems requires commensurate high-bandwidth I/O system. Many parallel file systems are designed to provide fast sustainable I/O in response to applications soaring requirements. To meet this need, a novel system is imperative to temporarily buffer the bursty I/O and gradually flush datasets to long-term parallel file systems. In this paper, we introduce the design of BurstMem, a high- performance burst buffer system. BurstMem provides a storage framework with efficient storage and communication manage- ment strategies. Our experiments demonstrate that BurstMem is able to speed up the I/O performance of scientific applications by up to 8.5 on leadership computer systems.

  6. The apoplastic oxidative burst peroxidase in Arabidopsis is a major component of pattern-triggered immunity.

    Science.gov (United States)

    Daudi, Arsalan; Cheng, Zhenyu; O'Brien, Jose A; Mammarella, Nicole; Khan, Safina; Ausubel, Frederick M; Bolwell, G Paul

    2012-01-01

    In plants, reactive oxygen species (ROS) associated with the response to pathogen attack are generated by NADPH oxidases or apoplastic peroxidases. Antisense expression of a heterologous French bean (Phaseolus vulgaris) peroxidase (FBP1) cDNA in Arabidopsis thaliana was previously shown to diminish the expression of two Arabidopsis peroxidases (peroxidase 33 [PRX33] and PRX34), block the oxidative burst in response to a fungal elicitor, and cause enhanced susceptibility to a broad range of fungal and bacterial pathogens. Here we show that mature leaves of T-DNA insertion lines with diminished expression of PRX33 and PRX34 exhibit reduced ROS and callose deposition in response to microbe-associated molecular patterns (MAMPs), including the synthetic peptides Flg22 and Elf26 corresponding to bacterial flagellin and elongation factor Tu, respectively. PRX33 and PRX34 knockdown lines also exhibited diminished activation of Flg22-activated genes after Flg22 treatment. These MAMP-activated genes were also downregulated in unchallenged leaves of the peroxidase knockdown lines, suggesting that a low level of apoplastic ROS production may be required to preprime basal resistance. Finally, the PRX33 knockdown line is more susceptible to Pseudomonas syringae than wild-type plants. In aggregate, these data demonstrate that the peroxidase-dependent oxidative burst plays an important role in Arabidopsis basal resistance mediated by the recognition of MAMPs.

  7. Detecting Pipe Bursts Using Heuristic and CUSUM Methods

    NARCIS (Netherlands)

    Bakker, M.; Jung, D.; Vreeburg, J.; Van de Roer, M.; Lansey, K.; Rierveld, L.

    2014-01-01

    Pipe bursts in a drinking water distribution system lead to water losses, interruption of supply, and damage to streets and houses due to the uncontrolled water flow. To minimize the negative consequences of pipe bursts, an early detection is necessary. This paper describes a heuristic burst detecti

  8. IGR J17254-3257, a new bursting neutron star

    DEFF Research Database (Denmark)

    Chenevez, Jérôme; Falanga, M.; Kuulkers, E.

    2007-01-01

    Aims. The study of the observational properties of uncommonly long bursts from low luminosity sources is important when investigating the transition from a hydrogen - rich bursting regime to a pure helium regime and from helium burning to carbon burning as predicted by current burst theories. On ...

  9. 46 CFR 154.554 - Cargo hose: Bursting pressure.

    Science.gov (United States)

    2010-10-01

    ... 46 Shipping 5 2010-10-01 2010-10-01 false Cargo hose: Bursting pressure. 154.554 Section 154.554... Hose § 154.554 Cargo hose: Bursting pressure. Cargo hose that may be exposed to the pressure in the cargo tank, the cargo pump discharge, or the vapor compressor discharge must have a bursting pressure of...

  10. Thalamic Bursts Down-regulate Cortical Theta and Nociceptive Behavior.

    Science.gov (United States)

    LeBlanc, Brian W; Cross, Brent; Smith, Kelsey A; Roach, Catherine; Xia, Jimmy; Chao, Yu-Chieh; Levitt, Joshua; Koyama, Suguru; Moore, Christopher I; Saab, Carl Y

    2017-05-30

    We tested the relation between pain behavior, theta (4-8 Hz) oscillations in somatosensory cortex and burst firing in thalamic neurons in vivo. Optically-induced thalamic bursts attenuated cortical theta and mechanical allodynia. It is proposed that thalamic bursts are an adaptive response to pain that de-synchronizes cortical theta and decreases sensory salience.

  11. Investigation of Primordial Black Hole Bursts using Interplanetary Network Gamma-ray Bursts

    CERN Document Server

    Ukwatta, T N; MacGibbon, J H; Svinkin, D S; Aptekar, R L; Golenetskii, S V; Frederiks, D D; Pal'shin, V D; Goldsten, J; Boynton, W; Fellows, C; Harshman, K; Mitrofanov, I G; Golovin, D V; Kozyrev, A S; Litvak, M L; Sanin, A B; Rau, A; Kienlin, A; Zhang, X; Briggs, M S; Connaughton, V; Meegan, C; Yamaoka, K; Fukazawa, Y; Ohno, M; Ohmori, N; Takahashi, T; Tashiro, M; Terada, Y; Murakami, T; Makishima, K; Feroci, M; Frontera, F; Guidorzi, C; Barthelmy, S; Cline, T; Gehrels, N; Cummings, J; Krimm, H A; Smith, D M; McTiernan, J

    2015-01-01

    The detection of a gamma-ray burst (GRB) in the solar neighborhood would have very important implications for GRB phenomenology. The leading theories for cosmological GRBs would not be able to explain such events. The final bursts of evaporating Primordial Black Holes (PBHs), however, would be a natural explanation for local GRBs. We present a novel technique that can constrain the minimum distance to gamma-ray bursts using detections from widely separated spacecraft. We applied this method to constrain distances to a sample of 36 short duration GRBs detected by the Interplanetary Network (IPN) that show observational properties that are expected from PBH evaporations. These bursts have minimum possible distances in the 10^13-10^18 cm (7-10^5 AU) range, consistent with the expected PBH energetics and with a possible origin in the solar neighborhood, although none of the bursts can be unambiguously demonstrated to be local. Assuming these bursts are real PBH events, we estimate for the first time lower limits ...

  12. NADPH oxidase: an enzyme for multicellularity?

    Science.gov (United States)

    Lalucque, Hervé; Silar, Philippe

    2003-01-01

    Multicellularity has evolved several times during the evolution of eukaryotes. One evolutionary pressure that permits multicellularity relates to the division of work, where one group of cells functions as nutrient providers and the other in specialized roles such as defence or reproduction. This requires signalling systems to ensure harmonious development of multicellular structures. Here, we show that NADPH oxidases are specifically present in organisms that differentiate multicellular structures during their life cycle and are absent from unicellular life forms. The biochemical properties of these enzymes make them ideal candidates for a role in intercellular signalling.

  13. NADH/NADPH Oxidase and Vascular Function.

    Science.gov (United States)

    Griendling, K K; Ushio-Fukai, M

    1997-11-01

    The vascular NADH/NADPH oxidase has been shown to be the major source of superoxide in the vessel wall. Recent work has provided insight into its structure and activity in vascular cells. This enzyme is involved in both vascular smooth muscle hypertrophy and in some forms of impaired endothelium-dependent relaxation. Because oxidative stress in general participates in the pathogenesis of hypertension and atherosclerosis, the enzymes that produce reactive oxygen species may be important determinants of the course of vascular disease. (Trends Cardiovasc Med 1997;7:301-307). © 1997, Elsevier Science Inc.

  14. OXIDASE REACTION OF VARIOUS GROUPS OF BACTERIA.

    Science.gov (United States)

    Felton, L D

    1923-08-31

    1. A simple technique is described for studying the oxidase action of bacteria by means of the oxidation of p-aminoleucomalachite green. 2. It is shown that pneumococci under aerobic conditions produced an oxidase when grown on suitable medium. The sera of any of seven different animal species constitute such a medium, the degree of oxidation by the pneumococcus depending upon the animal from which the serum was taken-rat, guinea pig, rabbit, horse, man, cat, and chicken in order of diminishing suitability. 3. Conditions favoring the oxidation of p-aminoleucomalachite green by a single strain of pneumococci are: the presence of a slight amount of hemoglobin, dextrose, H ion concentration on the add side, and heating of fresh serum for 30 minutes at 56 degrees C. Conditions preventing the oxidation are: sterilized meat infusion, 1 per cent peptone, plain broth, a high concentration of hemoglobin, and absence of oxygen. In a quantitative fashion, meat infusion, 1 per cent peptone, and plain broth interfere with the suitability of serum as a substratum of oxidase production by the pneumococcus. 4. Twenty-three microbic species were studied with reference to oxidative power. They were grown upon 10 per cent horse serum, with and without dextrose, upon 10 per cent guinea pig serum, and upon plain broth. Only three of the twenty-three gave evidence of oxidative power as tested by p-aminoleucomalachite green; namely, the pneumococcus, Streptococcus viridans, and Streptococcus haemolyticus. Among the strains, of these three pneumococci gave the most intense reaction, after which Streptococcus viridans and Streptococcus haemolyticus follow in the order named, but with a noticeable variation among the different strains of Streptococcus haemolyticus. 5. Hemolytic streptococci of human and bovine origin were studied. The only variation in the type of reaction was manifested by the streptococci of milk and cheese origin. Strains from these sources showed definitely the least

  15. Inhibition by gomisin C (a lignan from Schizandra chinensis) of the respiratory burst of rat neutrophils.

    Science.gov (United States)

    Wang, J P; Raung, S L; Hsu, M F; Chen, C C

    1994-11-01

    1. The possible mechanisms of action of the inhibitory effect of gomisin C on the respiratory burst of rat neutrophils in vitro was investigated. 2. The peptide formyl-Met-Leu-Phe (FMLP) induced superoxide anion (O2-) formation and O2 consumption, which was inhibited by gomisin C in a concentration-dependent manner (IC50 21.5 +/- 4.2 micrograms ml-1 for O2- formation). Gomisin C also suppressed O2- formation and consumption at low concentrations of phorbol myristate acetate (PMA) with an IC50 value of 26.9 +/- 2.1 micrograms ml-1 for O2- formation. However, gomisin C did not affect the responses induced by a high concentration of PMA. 3. Gomisin C had no effect on O2- generation and uric acid formation in the xanthine-xanthine oxidase system, and failed to alter O2- generation during dihydroxyfumaric acid (DHF) autoxidation, indicating that it does not scavenge superoxide. 4. Like trifluoperazine (TFP), gomisin C attenuated the activity of PMA-activated neutrophil particulate NADPH oxidase in a concentration-dependent manner. 5. Gomisin C reduced the elevations of cytosolic free Ca2+ in neutrophils stimulated by FMLP in the presence or absence of EDTA. Cyclopiazonic acid (CPA) induced the release of Ca2+ from intracellular stores and this was also reduced by gomisin C. However, the Ca2+ influx pathway activated by CPA was not affected by gomisin C. 6. The cellular cyclic AMP level was markedly increased by forskolin, but not by gomisin C. Moreover, the inositol phosphate levels in FMLP-activated neutrophils were not affected by gomisin C. 7. These results show that the inhibitory action of gomisin C on the respiratory burst is not mediated by changes in cellular cyclic AMP or in inositol phosphates, or by scavenging O2- released from neutrophils, but may be mediated partly by the suppression of NADPH oxidase and partly by the decrease of cytosolic Ca2+ released from an agonist-sensitive intracellular store.

  16. Rabbit muscle creatine phosphokinase. CDNA cloning, primary structure and detection of human homologues.

    Science.gov (United States)

    Putney, S; Herlihy, W; Royal, N; Pang, H; Aposhian, H V; Pickering, L; Belagaje, R; Biemann, K; Page, D; Kuby, S

    1984-12-10

    A cDNA library was constructed from rabbit muscle poly(A) RNA. Limited amino acid sequence information was obtained on rabbit muscle creatine phosphokinase and this was the basis for design and synthesis of two oligonucleotide probes complementary to a creatine kinase cDNA sequence which encodes a pentapeptide. Colony hybridizations with the probes and subsequent steps led to isolation of two clones, whose cDNA segments partially overlap and which together encode the entire protein. The primary structure was established from the sequence of two cDNA clones and from independently determined sequences of scattered portions of the polypeptide. The reactive cysteine has been located to position 282 within the 380 amino acid polypeptide. The rabbit cDNA hybridizes to digests of human chromosomal DNA. This reveals a restriction fragment length polymorphism associated with the human homologue(s) which hybridizes to the rabbit cDNA.

  17. Natural replacement of vertically inherited lux-rib genes of Photobacterium aquimaris by horizontally acquired homologues.

    Science.gov (United States)

    Urbanczyk, Henryk; Furukawa, Takashi; Yamamoto, Yuki; Dunlap, Paul V

    2012-08-01

    We report here the first instance of a complete replacement of vertically inherited luminescence genes by horizontally acquired homologues. Different strains of Photobacterium aquimaris contain homologues of the lux-rib genes that have a different evolutionary history. Strain BS1 from the Black Sea contains a vertically inherited lux-rib operon, which presumably arose in the ancestor of this species, whereas the type strain NBRC 104633(T) , from Sagami Bay, lacks the vertically inherited lux-rib operon and instead carries a complete and functional lux-rib operon acquired horizontally from a bacterium related to Photobacterium mandapamensis. The results indicate that the horizontal acquisition of the lux genes expanded the pan-genome of P. aquimaris, but it did not influence the phylogenetic divergence of this species.

  18. Formation of Benzyl Carbanion in Collision-Induced Dissociation of Deprotonated Phenylalanine Homologues.

    Science.gov (United States)

    Sekimoto, Kanako; Matsuda, Natsuki; Takayama, Mitsuo

    2014-01-01

    The fragmentation behavior of deprotonated L-phenylalanine (Phe) and its homologues including L-homophenylalanine (HPA) and L-phenylglycine (PG) was investigated using collision-induced dissociation mass spectrometry coupled with a negative ion atmospheric pressure corona discharge ionization (APCDI) technique. The deprotonated molecules [M-H](-) fragmented to lose unique neutral species, e.g., the loss of NH3, CO2, toluene and iminoglycine for [Phe-H](-); styrene and ethenamine/CO2 for [HPA-H](-); and CO2 for [PG-H](-). All of the fragmentations observed are attributable to the formation of intermediates and/or product ions which include benzyl carbanions having resonance-stabilized structures. The carbanions are formed via proton rearrangement through a transition state or via a simple dissociation reaction. These results suggest that the principal factor governing the fragmentation behavior of deprotonated Phe homologues is the stability of the intermediate and/or product ion structures.

  19. C21orf57 is a human homologue of bacterial YbeY proteins.

    Science.gov (United States)

    Ghosal, Anubrata; Köhrer, Caroline; Babu, Vignesh M P; Yamanaka, Kinrin; Davies, Bryan W; Jacob, Asha I; Ferullo, Daniel J; Gruber, Charley C; Vercruysse, Maarten; Walker, Graham C

    2017-03-11

    The product of the human C21orf57 (huYBEY) gene is predicted to be a homologue of the highly conserved YbeY proteins found in nearly all bacteria. We show that, like its bacterial and chloroplast counterparts, the HuYbeY protein is an RNase and that it retains sufficient function in common with bacterial YbeY proteins to partially suppress numerous aspects of the complex phenotype of an Escherichia coli ΔybeY mutant. Expression of HuYbeY in Saccharomyces cerevisiae, which lacks a YbeY homologue, results in a severe growth phenotype. This observation suggests that the function of HuYbeY in human cells is likely regulated through specific interactions with partner proteins similarly to the way YbeY is regulated in bacteria.

  20. Multicopper oxidase-1 orthologs from diverse insect species have ascorbate oxidase activity.

    Science.gov (United States)

    Peng, Zeyu; Dittmer, Neal T; Lang, Minglin; Brummett, Lisa M; Braun, Caroline L; Davis, Lawrence C; Kanost, Michael R; Gorman, Maureen J

    2015-04-01

    Members of the multicopper oxidase (MCO) family of enzymes can be classified by their substrate specificity; for example, ferroxidases oxidize ferrous iron, ascorbate oxidases oxidize ascorbate, and laccases oxidize aromatic substrates such as diphenols. Our previous work on an insect multicopper oxidase, MCO1, suggested that it may function as a ferroxidase. This hypothesis was based on three lines of evidence: RNAi-mediated knock down of Drosophila melanogaster MCO1 (DmMCO1) affects iron homeostasis, DmMCO1 has ferroxidase activity, and DmMCO1 has predicted iron binding residues. In our current study, we expanded our focus to include MCO1 from Anopheles gambiae, Tribolium castaneum, and Manduca sexta. We verified that MCO1 orthologs have similar expression profiles, and that the MCO1 protein is located on the basal surface of cells where it is positioned to oxidize substrates in the hemolymph. In addition, we determined that RNAi-mediated knock down of MCO1 in A. gambiae affects iron homeostasis. To further characterize the enzymatic activity of MCO1 orthologs, we purified recombinant MCO1 from all four insect species and performed kinetic analyses using ferrous iron, ascorbate and two diphenols as substrates. We found that all of the MCO1 orthologs are much better at oxidizing ascorbate than they are at oxidizing ferrous iron or diphenols. This result is surprising because ascorbate oxidases are thought to be specific to plants and fungi. An analysis of three predicted iron binding residues in DmMCO1 revealed that they are not required for ferroxidase or laccase activity, but two of the residues (His374 and Asp380) influence oxidation of ascorbate. These two residues are conserved in MCO1 orthologs from insects and crustaceans; therefore, they are likely to be important for MCO1 function. The results of this study suggest that MCO1 orthologs function as ascorbate oxidases and influence iron homeostasis through an unknown mechanism.

  1. Hydrodynamic stress induces monoterpenoid oxindole alkaloid accumulation by Uncaria tomentosa (Willd) D. C. cell suspension cultures via oxidative burst.

    Science.gov (United States)

    Trejo-Tapia, Gabriela; Sepúlveda-Jiménez, Gabriela; Trejo-Espino, José Luis; Cerda-García-Rojas, Carlos M; de la Torre, Mayra; Rodríguez-Monroy, Mario; Ramos-Valdivia, Ana C

    2007-09-01

    Uncaria tomentosa cell suspension cultures were grown in a 2-L stirred tank bioreactor operating at a shear rate gamma(.)(avg)=86 s(-1). The cultures showed an early monophasic oxidative burst measured as H2O2 production (2.15 micromol H2O2 g(-1) dw). This response was followed by a transient production of monoterpenoid oxindole alkaloids (178 +/- 40 microg L(-1) at 24 h). At the stationary phase (144 h), the increase of the shear rate gamma(.)(avg) up to 150 s(-1) and/or oxygen tension up to 85% generated H2O2, restoring oxindole alkaloid production. U. tomentosa cells cultured in Erlenmeyer flasks also exhibited the monophasic oxidative burst but the H2O2 production was 16-fold lower and the alkaloids were not detected. These cells exposed to H2O2 generated in situ produced oxindole alkaloids reaching a maximum of 234 +/- 40 microg L(-1). A positive correlation was observed between the oxindole alkaloid production and the endogenous H2O2 level. On the other hand, addition of 1 microM diphenyleneiodonium (NAD(P)H oxidase inhibitor) or 10 microM sodium azide (peroxidases inhibitor) reduced both H2O2 production and oxindole alkaloids build up, suggesting that these enzymes might play a role in the oxidative burst induced by the hydrodynamic stress.

  2. INTERPLANETARY NETWORK LOCALIZATIONS OF KONUS SHORT GAMMA-RAY BURSTS

    Energy Technology Data Exchange (ETDEWEB)

    Pal' shin, V. D.; Svinkin, D. S.; Aptekar, R. L.; Golenetskii, S. V.; Frederiks, D. D.; Mazets, E. P.; Oleynik, P. P.; Ulanov, M. V. [Ioffe Physical Technical Institute, St. Petersburg, 194021 (Russian Federation); Hurley, K. [Space Sciences Laboratory, University of California, 7 Gauss Way, Berkeley, CA 94720-7450 (United States); Cline, T.; Trombka, J.; McClanahan, T. [NASA Goddard Space Flight Center, Greenbelt, MD 20771 (United States); Mitrofanov, I. G.; Golovin, D. V.; Kozyrev, A. S.; Litvak, M. L.; Sanin, A. B. [Space Research Institute, 84/32, Profsoyuznaya, Moscow 117997 (Russian Federation); Boynton, W.; Fellows, C.; Harshman, K., E-mail: val@mail.ioffe.ru [Department of Planetary Sciences, University of Arizona, Tucson, AZ 85721 (United States); and others

    2013-08-15

    Between the launch of the Global Geospace Science Wind spacecraft in 1994 November and the end of 2010, the Konus-Wind experiment detected 296 short-duration gamma-ray bursts (including 23 bursts which can be classified as short bursts with extended emission). During this period, the Interplanetary Network (IPN) consisted of up to 11 spacecraft, and using triangulation, the localizations of 271 bursts were obtained. We present the most comprehensive IPN localization data on these events. The short burst detection rate, {approx}18 yr{sup -1}, exceeds that of many individual experiments.

  3. An Analysis of Burst Disc Pressure Instability

    Energy Technology Data Exchange (ETDEWEB)

    S. L. Robinson; B. C. Odegard, Jr.; N. r. Moody; S. H. Goods

    2000-06-01

    During the development stage of the 1X Acorn burst disc, burst pressure test results exhibited an unexpected increase of 8 to 14% over times of 90--100 days from initial fabrication. This increase is a concern where design constraints require stability. The disc material, 316L stainless steel sheet, is formed to a dome-like geometry and scored to produce a thin-walled, high-strength ligament. The fracture events controlling burst occur in that ligament. Thus it has been characterized both for tensile properties and microstructure through nanoindentation, magnetic measurements, optical and transmission electron microscopy. These results compare favorably with finite element simulation of the properties of the ligament. The ligament exhibits a highly heterogeneous microstructure; its small volume and microstructural heterogeneity make it difficult to identify which microstructural feature controls fracture and hence burst pressure. Bulk mechanical test specimens were fabricated to emulate mid-ligament properties, and aged at both room and elevated temperatures to characterize and accelerate the temporal behavior of the burst disc. Property changes included yield and ultimate tensile strength increases, and fracture strain decreases with aging. Specimens were subjected to a reversion anneal identical to that given the burst disc to eliminate the martensite phase formed during rolling. Reversion-annealed samples exhibited no change in properties in room temperature or accelerated aging, showing that the reversion-anneal eliminated the aging phenomenon. Aging was analyzed in terms of diffusion controlled precipitate growth kinetics, showing that carbon migration to dislocations is consistent with the strength increases. A vacancy-assisted diffusion mechanism for carbon transport is proposed, giving rise to rapid aging, which replaces interstitial carbon diffusion until excess vacancies from deformation are consumed. Mechanical activation parameters in stress relaxation

  4. [Homologue pairing: initiation sites and effects on crossing over and chromosome disjunction in Drosophila melanogaster].

    Science.gov (United States)

    Chubykin, V L

    1996-01-01

    The role of homologue pairing and chromocentral association of chromosomes in recombination and segregation during cell division is discussed. Peculiarities of mitotic and meiotic chromosome pairing in Drosophila males and females are considered. On the basis of our own and published data, the presence and localization of sites of homologue pairing initiation in euchromatin are substantiated. The effects of transfer of initiation sites along a chromosome (exemplified by inversions) on chromosome pairing (asynapsis), crossing over (intrachromosomal, interchromosomal, and centromeric effects), and segregation are discussed. To record the effects of pairing sites on crossing over, a method of comparing crossing-over frequencies in an inverted region with those in a region of the same size and position with regard to the centromere on cytological maps was proposed. Chromosomes orient toward opposite division poles during paracentromeric heterochromatin pairing. This occurs after successful euchromatin pairing, during which the chromocentral circular structure is reorganized. If heterochromatin pairing is disrupted because of structural or locus mutations, nonexchange bivalents segregate randomly. In this case, chromosome coordination may occur due to proximal chiasmata or chromocentral associations between homologues.

  5. Homologue of mammalian apolipoprotein A-Ⅱ in non-mammalian vertebrates

    Institute of Scientific and Technical Information of China (English)

    Malay Choudhury; Shoji Yamada; Masaharu Komatsu; Hideki Kishimura; Seiichi Ando

    2009-01-01

    Although apolipoprotein with molecular weight 14 kDa (apo-14 kDa) is associated with fish plasma highdensity lipoproteins(HDLs),it remains to be determined whether apo-14 kDa is the homologue of mammalian apoA-Ⅱ.We have obtained the full cDNA sequences that encode Japanese eel and rainbow trout apo-14 kDa.Homologues of Japanese eel apo-14 kDa sequence could be found in 14 fish species deposited in the DDBJ/EMBL/GenBank or TGI database.Fish apo14 kDa lacks propeptide and contains more internal repeats than mammalian apoA-Ⅱ.Nevertheless,phylogenetic analysis allowed fish apo-14 kDa to be the homologue of mammalian apoA-Ⅱ.In addition,in silico cloning of the TGI,Ensembl,or NCBI database revealed apoA-Ⅱs in dog,chicken,green anole lizard,and African clawed frog whose sequences had not so far been available,suggesting both apoA-Ⅰ and apoA-Ⅱas fundamental constituents of vertebrate HDLs.

  6. Osmotic stress-dependent serine phosphorylation of the histidine kinase homologue DokA

    Directory of Open Access Journals (Sweden)

    Oehme Felix

    2001-03-01

    Full Text Available Abstract Background Two-component systems consisting of histidine kinases and their corresponding receivers are widespread in bacterial signal transduction. In the past few years, genes coding for homologues of two-component systems were also discovered in eukaryotic organisms. DokA, a homologue of bacterial histidine kinases, is an element of the osmoregulatory pathway in the amoeba Dictyostelium. The work described here addresses the question whether DokA is phosphorylated in vivo in response to osmotic stress. Results We have endogenously overexpressed individual domains of DokA to investigate post-translational modification of the protein in response to osmotic shock in vivo. Dictyostelium cells were labeled with [32P]-orthophosphate, exposed to osmotic stress and DokA fragments were subsequently isolated by immunoprecipitation. Thus, a stress-dependent phosphorylation could be demonstrated, with the site of phosphorylation being located in the kinase domain. We demonstrate biochemically that the phosphorylated amino acid is serine, and by mutational analysis that the phosphorylation reaction is not due to an autophosphorylation of DokA. Furthermore, mutation of the conserved histidine did not affect the osmostress-dependent phosphorylation reaction. Conclusions A stimulus-dependent serine phosphorylation of a eukaryotic histidine kinase homologue was demonstrated for the first time in vivo. That implies that DokA, although showing typical structural features of a bacterial two-component system, might be part of a eukaryotic signal transduction pathway that involves serine/threonine kinases.

  7. Arabidopsis thaliana CENTRORADIALIS homologue (ATC) acts systemically to inhibit floral initiation in Arabidopsis.

    Science.gov (United States)

    Huang, Nien-Chen; Jane, Wann-Neng; Chen, Jychian; Yu, Tien-Shin

    2012-10-01

    Floral initiation is orchestrated by systemic floral activators and inhibitors. This remote-control system may integrate environmental cues to modulate floral initiation. Recently, FLOWERING LOCUS T (FT) was found to be a florigen. However, the identity of systemic floral inhibitor or anti-florigen remains to be elucidated. Here we show that Arabidopsis thaliana CENTRORADIALIS homologue (ATC), an Arabidopsis FT homologue, may act in a non-cell autonomous manner to inhibit floral initiation. Analysis of the ATC null mutant revealed that ATC is a short-day-induced floral inhibitor. Cell type-specific expression showed that companion cells and apex that express ATC are sufficient to inhibit floral initiation. Histochemical analysis showed that the promoter activity of ATC was mainly found in vasculature but under the detection limit in apex, a finding that suggests that ATC may move from the vasculature to the apex to influence flowering. Consistent with this notion, Arabidopsis seedling grafting experiments demonstrated that ATC moved over a long distance and that floral inhibition by ATC is graft transmissible. ATC probably antagonizes FT activity, because both ATC and FT interact with FD and affect the same downstream meristem identity genes APETALA1, in an opposite manner. Thus, photoperiodic variations may trigger functionally opposite FT homologues to systemically influence floral initiation.

  8. Obesity-linked homologues TfAP-2 and Twz establish meal frequency in Drosophila melanogaster.

    Directory of Open Access Journals (Sweden)

    Michael J Williams

    2014-09-01

    Full Text Available In all animals managing the size of individual meals and frequency of feeding is crucial for metabolic homeostasis. In the current study we demonstrate that the noradrenalin analogue octopamine and the cholecystokinin (CCK homologue Drosulfakinin (Dsk function downstream of TfAP-2 and Tiwaz (Twz to control the number of meals in adult flies. Loss of TfAP-2 or Twz in octopaminergic neurons increased the size of individual meals, while overexpression of TfAP-2 significantly decreased meal size and increased feeding frequency. Of note, our study reveals that TfAP-2 and Twz regulate octopamine signaling to initiate feeding; then octopamine, in a negative feedback loop, induces expression of Dsk to inhibit consummatory behavior. Intriguingly, we found that the mouse TfAP-2 and Twz homologues, AP-2β and Kctd15, co-localize in areas of the brain known to regulate feeding behavior and reward, and a proximity ligation assay (PLA demonstrated that AP-2β and Kctd15 interact directly in a mouse hypothalamus-derived cell line. Finally, we show that in this mouse hypothalamic cell line AP-2β and Kctd15 directly interact with Ube2i, a mouse sumoylation enzyme, and that AP-2β may itself be sumoylated. Our study reveals how two obesity-linked homologues regulate metabolic homeostasis by modulating consummatory behavior.

  9. Enzymatic Characterization and In Vivo Function of Five Terminal Oxidases in Pseudomonas aeruginosa

    OpenAIRE

    Arai, Hiroyuki; Kawakami, Takuro; Osamura, Tatsuya; Hirai, Takehiro; Sakai, Yoshiaki; Ishii, Masaharu

    2014-01-01

    The ubiquitous opportunistic pathogen Pseudomonas aeruginosa has five aerobic terminal oxidases: bo3-type quinol oxidase (Cyo), cyanide-insensitive oxidase (CIO), aa3-type cytochrome c oxidase (aa3), and two cbb3-type cytochrome c oxidases (cbb3-1 and cbb3-2). These terminal oxidases are differentially regulated under various growth conditions and are thought to contribute to the survival of this microorganism in a wide variety of environmental niches. Here, we constructed multiple mutant str...

  10. Laboratory-evolved vanillyl-alcohol oxidase produces natural vanillin

    NARCIS (Netherlands)

    Heuvel, van den R.H.H.; Berg, van den W.A.M.; Rovida, S.; Berkel, van W.J.H.

    2004-01-01

    The flavoenzyme vanillyl-alcohol oxidase was subjected to random mutagenesis to generate mutants with enhanced reactivity to creosol (2-methoxy-4-methylphenol). The vanillyl-alcohol oxidase-mediated conversion of creosol proceeds via a two-step process in which the initially formed vanillyl alcohol

  11. Endothelins and NADPH oxidases in the cardiovascular system.

    Science.gov (United States)

    Dammanahalli, Karigowda J; Sun, Zhongjie

    2008-01-01

    1. The endothelin (ET) system and NADPH oxidase play important roles in the regulation of cardiovascular function, as well as in the pathogenesis of hypertension and other cardiovascular diseases. 2. Endothelins activate NADPH oxidases and thereby increase superoxide production, resulting in oxidative stress and cardiovascular dysfunction. Thus, NADPH oxidases may mediate the role of endothelins in some cardiovascular diseases. However, the role of reactive oxygen species (ROS) in mediating ET-induced vasoconstriction and cardiovascular disease remains under debate, as evidenced by conflicting reports from different research teams. Conversely, activation of NADPH oxidase can stimulate ET secretion via ROS generation, which further enhances the cardiovascular effects of NADPH oxidase. However, little is known about how ROS activate the endothelin system. It seems that the relationship between ET-1 and ROS may vary with cardiovascular disorders. 3. Endothelins activate NADPH oxidase via the ET receptor-proline-rich tyrosine kinase-2 (Pyk2)-Rac1 pathway. Rac1 is an important regulator of NADPH oxidase. There is ample evidence supporting direct stimulation by Rac1 of NADPH oxidase activity. In addition, Rac1-induced cardiomyocyte hypertrophy is mediated by the generation of ROS.

  12. Priming and activation of NADPH oxidases in plants and animals.

    Science.gov (United States)

    Canton, Johnathan; Grinstein, Sergio

    2014-09-01

    In mammals, engagement of Toll-like receptors by microbe-associated molecular patterns enhances the responsiveness of NADPH oxidases. Two recent papers report a similar 'priming' mechanism for the plant oxidase RbohD. Despite lacking structural homology, the functional parallels between plants and animals reveal that a common regulatory logic arose by convergent evolution. Copyright © 2014 Elsevier Ltd. All rights reserved.

  13. Achaete-scute complex homologue-1 promotes development of laryngocarcinoma via facilitating the epithelial-mesenchymal transformation.

    Science.gov (United States)

    Ma, Huaci; Du, Xiaodong; Zhang, Shu; Wang, Qiang; Yin, Yong; Qiu, Xiaoxia; Da, Peng; Yue, Huijun; Wu, Hao; Xu, Fenglei

    2017-06-01

    Laryngeal cancer is one of the most common fatal cancers among head and neck carcinomas, whose mechanism, however, remains unclear. The proneural basic-helix-loop-helix protein achaete-scute complex homologue-1, a member of the basic helix-loop-helix family, plays a very important role in many cancers. This study aims to explore the clinical value and mechanism of achaete-scute complex homologue-1 in laryngeal cancer. Methods including Cell Counting Kit-8, flow cytometry, Transwell invasion assays, and scratch assay were adopted to further explore the bio-function of achaete-scute complex homologue-1, whose expression was examined in fresh and paraffin chip of laryngeal carcinoma tissues by means of western blot and immunohistochemistry, after the interference of achaete-scute complex homologue-1; achaete-scute complex homologue-1, an overexpression in laryngeal carcinoma whose carcinogenicity potential was confirmed via western blot, was correlative with T classification (p = 0.002), histological differentiation (p = 0.000), lymph node metastasis (p = 0.000), and poor survival (p = 0.000). Multivariate analysis shows that achaete-scute complex homologue-1 overexpression is an independent prognostic factor unfavorable to laryngeal carcinoma patients (p = 0.000). Moreover, knocking down achaete-scute complex homologue-1 expression could significantly suppress the proliferation, migration, and invasion of laryngeal carcinoma cell in vitro and disorder epithelial-mesenchymal transformation-associated protein expression. Achaete-scute complex homologue-1 plays an important role in the genesis and progression of laryngeal carcinoma and may act as a potential biomarker for therapeutic target and prognostic prediction.

  14. On associating Fast Radio Bursts with afterglows

    CERN Document Server

    Vedantham, H K; Mooley, K; Frail, D; Hallinan, G; Kulkarni, S R

    2016-01-01

    A radio source that faded over 6 days, with a redshift $z\\approx0.5$ host, has been identified by Keane et al. (2016) as the transient afterglow to a Fast Radio Burst (FRB 150418). We report follow-up radio and optical observations of the afterglow candidate, and find a source that is consistent with an active galactic nucleus (AGN). If the afterglow-candidate is nonetheless a prototypical FRB afterglow, existing surveys limit the fraction of FRBs that produce afterglows to 0.25 for modulation-index $m=\\Delta S/\\bar{S}\\geq0.7$, and 0.07 for $m\\geq1$, at 95\\% confidence. Afterglow associations with the barrage of bursts expected from future FRB surveys must satisfy constraints on the afterglow rate set by state of the art slow-transient surveys.

  15. PQMon: a powerful veto for burst events

    Science.gov (United States)

    Kötter, K.; Heng, I. S.; Hewitson, M.; Strain, K. A.; Woan, G.; Ward, H.

    2003-09-01

    Data taken by the gravitational wave detector GEO 600 (Danzmann K et al 1994 GEO 600—Proposal for a 600m Laser-Interferometric Gravitational Wave Antenna (Garching: MPQ)) during the science run 'S1' contain a large number of transients. In order to reduce the false-alarm rate of burst gravitational wave search algorithms it is desirable to veto all those transients that are clearly not of gravitational wave origin. This paper presents a method of vetoing transients by looking at the 'in-phase' (P) and 'quadrature' (Q) channels of the demodulated interferometer output signal. By taking advantage of the fact that the P-channel and the Q-channel have different sensitivities to gravitational wave burst events, this method can veto transients that have a power distribution different from the signature of a signal induced by a gravitational wave.

  16. Burst Detector X-Ray IIR

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1998-02-01

    The Burst Detector X-Ray (BDX) instrument for the Block IIR series of Global Positioning System satellites is described. The BDX instrument can locate and characterize exoatmospheric nuclear detonations by using four sensors consisting of sets of filters over silicon diodes to detect x rays of various energies from the burst. On the BDX-IIR, a fifth sensor with a response spanning those of the other sensors confirms coincidences among the four main channels. The mechanical and electronic features of the BDX-IIR and its sensors are described. The calibrations and the system tests used in flight are presented. The commands for the BDX-IIR are given. The messages sent from the BDX-IIR are described in detail.

  17. Coherence resonance in bursting neural networks.

    Science.gov (United States)

    Kim, June Hoan; Lee, Ho Jun; Min, Cheol Hong; Lee, Kyoung J

    2015-10-01

    Synchronized neural bursts are one of the most noticeable dynamic features of neural networks, being essential for various phenomena in neuroscience, yet their complex dynamics are not well understood. With extrinsic electrical and optical manipulations on cultured neural networks, we demonstrate that the regularity (or randomness) of burst sequences is in many cases determined by a (few) low-dimensional attractor(s) working under strong neural noise. Moreover, there is an optimal level of noise strength at which the regularity of the interburst interval sequence becomes maximal-a phenomenon of coherence resonance. The experimental observations are successfully reproduced through computer simulations on a well-established neural network model, suggesting that the same phenomena may occur in many in vivo as well as in vitro neural networks.

  18. Are gamma-ray bursts cosmological?

    CERN Document Server

    Horvath, I

    2015-01-01

    Gamma-ray burst sources are distributed with a high level of isotropy, which is compatible with either a cosmological origin or an extended Galactic halo origin. The brightness distribution is another indicator used to characterize the spatial distribution in distance. In this paper the author discusses detailed fits of the BATSE gamma-ray burst peak-flux distributions with Friedmann models taking into account possible density evolution and standard candle luminosity functions. A chi-square analysis is used to estimate the goodness of the fits and the author derives the significance level of limits on the density evolution and luminosity function parameters. Cosmological models provide a good fit over a range of parameter space which is physically reasonable

  19. Bursts of activity in collective cell migration

    CERN Document Server

    Chepizhko, Oleksandr; Mastrapasqua, Eleonora; Nourazar, Mehdi; Ascagni, Miriam; Sugni, Michela; Fascio, Umberto; Leggio, Livio; Malinverno, Chiara; Scita, Giorgio; Santucci, Stephane; Alava, Mikko J; Zapperi, Stefano; La Porta, Caterina A M

    2016-01-01

    Dense monolayers of living cells display intriguing relaxation dynamics, reminiscent of soft and glassy materials close to the jamming transition, and migrate collectively when space is available, as in wound healing or in cancer invasion. Here we show that collective cell migration occurs in bursts that are similar to those recorded in the propagation of cracks, fluid fronts in porous media and ferromagnetic domain walls. In analogy with these systems, the distribution of activity bursts displays scaling laws that are universal in different cell types and for cells moving on different substrates. The main features of the invasion dynamics are quantitatively captured by a model of interacting active particles moving in a disordered landscape. Our results illustrate that collective motion of living cells is analogous to the corresponding dynamics in driven, but inanimate, systems.

  20. Measuring cosmology with Gamma-Ray Bursts

    Energy Technology Data Exchange (ETDEWEB)

    Dai, Z.G.; Xu, D.; Liang, W. [Nanjing Univ., Nanjing (Switzerland). Department of Astronomy

    2005-07-15

    Gamma-Ray Bursts (GRBs) are becoming more and more standardizable candles. Different methods have been proposed to measure cosmology with the relation between the {gamma}-ray energy E{sub {gamma}} of a GRB jet and the peak energy E{sub p} of the {nu}F{nu} spectrum in the burst frame. We compare the procedures and results of these methods. Using the present sample of 17 GRBs, we obtain a constraint on the mass density {omega}M 0.22{sub -0.07}{sup +0.42} (1{sigma}) for a flat ACDM universe with the median circumburst density n {approx_equal} 3.0 cm{sup -3}. Theoretical investigations of the E{sub {gamma}} {alpha} E{sub p}{sup a} relation reach a {approx} 1.5. A larger sample in the Swift era is expected to provide further constraints on the GRB cosmography.

  1. Bursting behaviours in cascaded stimulated Brillouin scattering

    Institute of Scientific and Technical Information of China (English)

    Liu Zhan-Jun; He Xian-Tu; Zheng Chun-Yang; Wang Yu-Gang

    2012-01-01

    Stimulated Brillouin scattering is studied by numerically solving the Vlasov-Maxwell system.A cascade of stimulated Brillouin scattering can occur when a linearly polarized laser pulse propagates in a plasma.It is found that a stimulated Brillouin scattering cascade can reduce the scattering and increase the transmission of light,as well as introduce a bursting behaviour in the evolution of the laser-plasma interaction.The bursting time in the reflectivity is found to be less than half the ion acoustic period.The ion temperature can affect the stimulated Brillouin scattering cascade,which can repeat several times at low ion temperatures and can be completely eliminated at high ion temperatures.For stimulated Brillouin scattering saturation,higher-harmonic generation and wave-wave interaction of the excited ion acoustic waves can restrict the amplitude of the latter.In addition,stimulated Brillouin scattering cascade can restrict the amplitude of the scattered light.

  2. Energy bursts in vibrated shallow granular systems

    Science.gov (United States)

    Rivas, N.; Risso, D.; Soto, R.; Cordero, P.

    2011-03-01

    In a mixture of two species of inelastic spheres of equal size but different mass, placed in a vertically vibrated shallow box (large horizontal dimensions and height comparable to the grains' size), there is spontaneous segregation. Once the system is at least partly segregated energy bursts recurrently take place: the horizontal kinetic energy of the heavy particles, that normally is small, suddenly increases an order of magnitude. An explanation of these events is provided based on the existence of a fixed point for an isolated particle bouncing with only vertical motion between the top and bottom plates. Energy bursts occur when clusters of heavy particles start a chain reaction of collisions that transfer vertical energy to horizontal energy producing an expansion of the cluster.

  3. Modulation of NADPH oxidase activity by known uraemic retention solutes

    DEFF Research Database (Denmark)

    Schulz, Anna Marta; Terne, Cindy; Jankowski, Vera

    2014-01-01

    as the strongest inhibitor of NADPH oxidase (90% of DPI inhibition). Surprisingly, none of the uraemic retention solutes we investigated was found to increase NADPH oxidase activity. Furthermore, plasma from patients with CKD-5D before dialysis caused significantly higher inhibitory effect on NADPH oxidase...... inhibitory effect on NADPH oxidase activity in the presence of plasma from patients with CKD-5D after dialysis compared with before dialysis, we investigated the effect of 48 known and commercially available uraemic retention solutes on the enzymatic activity of NADPH oxidase. METHODS: Mononuclear leucocytes...... isolated from buffy coats of healthy volunteers were isolated, lysed and incubated with NADH in the presence of plasma from healthy controls and patients with CKD-5D. Furthermore, the leucocytes were lysed and incubated in the presence of uraemic retention solute of interest and diphenyleneiodonium...

  4. The NADH oxidase-Prx system in Amphibacillus xylanus.

    Science.gov (United States)

    Niimura, Youichi

    2007-01-01

    Amphibacillus NADH oxidase belongs to a growing new family of peroxiredoxin-linked oxidoreductases including alkyl hydroperoxide reductase F (AhpF). Like AhpF it displays extremely high hydroperoxide reductase activity in the presence of a Prx, thus making up the NADH oxidase-Prx system. The NADH oxidase primarily catalyzes the reduction of oxygen by NADH to form H2O2, while the Prx immediately reduces H2O2 (or ROOH) to water (or ROH). Consequently, the NADH oxidase-Prx system catalyzes the reduction of both oxygen and hydrogen peroxide to water with NADH as the preferred electron donor. The NADH oxidase-Prx system is widely distributed in aerobically growing bacteria lacking a respiratory chain and catalase, and plays an important role not only in scavenging hydroperoxides but also in regenerating NAD in these bacteria.

  5. Functional Characterization of Aspergillus nidulans ypkA, a Homologue of the Mammalian Kinase SGK

    Science.gov (United States)

    Colabardini, Ana Cristina; Brown, Neil Andrew; Savoldi, Marcela; Goldman, Maria Helena S.; Goldman, Gustavo Henrique

    2013-01-01

    The serum- and glucocorticoid-regulated protein kinase (SGK) is an AGC kinase involved in signal cascades regulated by glucocorticoid hormones and serum in mammals. The Saccharomyces cerevisiae ypk1 and ypk2 genes were identified as SGK homologues and Ypk1 was shown to regulate the balance of sphingolipids between the inner and outer plasma membrane. This investigation characterized the Aspergillus nidulans YPK1 homologue, YpkA, representing the first filamentous fungal YPK1 homologue. Two conditional mutant strains were constructed by replacing the endogenous ypk1 promoter with two different regulatable promoters, alcA (from the alcohol dehydrogenase gene) and niiA (from the nitrate reductase gene). Both constructs confirmed that ypkA was an essential gene in A. nidulans. Repression of ypkA caused decreased radial growth, a delay in conidial germination, deficient polar axis establishment, intense branching during late stages of growth, a lack of asexual spores, and a terminal phenotype. Membrane lipid polarization, endocytosis, eisosomes and vacuolar distribution were also affected by ypkA repression, suggesting that YpkA plays a role in hyphal morphogenesis via coordinating the delivery of cell membrane and wall constituents to the hyphal apex. The A. nidulans Pkh1 homologue pkhA was also shown to be an essential gene, and preliminary genetic analysis suggested that the ypkA gene is not directly downstream of pkhA or epistatic to pkhA, rather, ypkA and pkhA are genetically independent or in parallel. BarA is a homologue of the yeast Lag1 acyl-CoA-dependent ceramide synthase, which catalyzes the condensation of phytosphingosine with a fatty acyl-CoA to form phytoceramide. When barA was absent, ypkA repression was lethal to the cell. Therefore, there appears to be a genetic interaction between ypkA, barA, and the sphingolipid synthesis. Transcriptional profiling of ypkA overexpression and down-regulation revealed several putative YpkA targets associated with the

  6. Functional characterization of Aspergillus nidulans ypkA, a homologue of the mammalian kinase SGK.

    Science.gov (United States)

    Colabardini, Ana Cristina; Brown, Neil Andrew; Savoldi, Marcela; Goldman, Maria Helena S; Goldman, Gustavo Henrique

    2013-01-01

    The serum- and glucocorticoid-regulated protein kinase (SGK) is an AGC kinase involved in signal cascades regulated by glucocorticoid hormones and serum in mammals. The Saccharomyces cerevisiae ypk1 and ypk2 genes were identified as SGK homologues and Ypk1 was shown to regulate the balance of sphingolipids between the inner and outer plasma membrane. This investigation characterized the Aspergillus nidulans YPK1 homologue, YpkA, representing the first filamentous fungal YPK1 homologue. Two conditional mutant strains were constructed by replacing the endogenous ypk1 promoter with two different regulatable promoters, alcA (from the alcohol dehydrogenase gene) and niiA (from the nitrate reductase gene). Both constructs confirmed that ypkA was an essential gene in A. nidulans. Repression of ypkA caused decreased radial growth, a delay in conidial germination, deficient polar axis establishment, intense branching during late stages of growth, a lack of asexual spores, and a terminal phenotype. Membrane lipid polarization, endocytosis, eisosomes and vacuolar distribution were also affected by ypkA repression, suggesting that YpkA plays a role in hyphal morphogenesis via coordinating the delivery of cell membrane and wall constituents to the hyphal apex. The A. nidulans Pkh1 homologue pkhA was also shown to be an essential gene, and preliminary genetic analysis suggested that the ypkA gene is not directly downstream of pkhA or epistatic to pkhA, rather, ypkA and pkhA are genetically independent or in parallel. BarA is a homologue of the yeast Lag1 acyl-CoA-dependent ceramide synthase, which catalyzes the condensation of phytosphingosine with a fatty acyl-CoA to form phytoceramide. When barA was absent, ypkA repression was lethal to the cell. Therefore, there appears to be a genetic interaction between ypkA, barA, and the sphingolipid synthesis. Transcriptional profiling of ypkA overexpression and down-regulation revealed several putative YpkA targets associated with the

  7. Functional characterization of Aspergillus nidulans ypkA, a homologue of the mammalian kinase SGK.

    Directory of Open Access Journals (Sweden)

    Ana Cristina Colabardini

    Full Text Available The serum- and glucocorticoid-regulated protein kinase (SGK is an AGC kinase involved in signal cascades regulated by glucocorticoid hormones and serum in mammals. The Saccharomyces cerevisiae ypk1 and ypk2 genes were identified as SGK homologues and Ypk1 was shown to regulate the balance of sphingolipids between the inner and outer plasma membrane. This investigation characterized the Aspergillus nidulans YPK1 homologue, YpkA, representing the first filamentous fungal YPK1 homologue. Two conditional mutant strains were constructed by replacing the endogenous ypk1 promoter with two different regulatable promoters, alcA (from the alcohol dehydrogenase gene and niiA (from the nitrate reductase gene. Both constructs confirmed that ypkA was an essential gene in A. nidulans. Repression of ypkA caused decreased radial growth, a delay in conidial germination, deficient polar axis establishment, intense branching during late stages of growth, a lack of asexual spores, and a terminal phenotype. Membrane lipid polarization, endocytosis, eisosomes and vacuolar distribution were also affected by ypkA repression, suggesting that YpkA plays a role in hyphal morphogenesis via coordinating the delivery of cell membrane and wall constituents to the hyphal apex. The A. nidulans Pkh1 homologue pkhA was also shown to be an essential gene, and preliminary genetic analysis suggested that the ypkA gene is not directly downstream of pkhA or epistatic to pkhA, rather, ypkA and pkhA are genetically independent or in parallel. BarA is a homologue of the yeast Lag1 acyl-CoA-dependent ceramide synthase, which catalyzes the condensation of phytosphingosine with a fatty acyl-CoA to form phytoceramide. When barA was absent, ypkA repression was lethal to the cell. Therefore, there appears to be a genetic interaction between ypkA, barA, and the sphingolipid synthesis. Transcriptional profiling of ypkA overexpression and down-regulation revealed several putative YpkA targets

  8. Identifying crucial parameter correlations maintaining bursting activity.

    Directory of Open Access Journals (Sweden)

    Anca Doloc-Mihu

    2014-06-01

    Full Text Available Recent experimental and computational studies suggest that linearly correlated sets of parameters (intrinsic and synaptic properties of neurons allow central pattern-generating networks to produce and maintain their rhythmic activity regardless of changing internal and external conditions. To determine the role of correlated conductances in the robust maintenance of functional bursting activity, we used our existing database of half-center oscillator (HCO model instances of the leech heartbeat CPG. From the database, we identified functional activity groups of burster (isolated neuron and half-center oscillator model instances and realistic subgroups of each that showed burst characteristics (principally period and spike frequency similar to the animal. To find linear correlations among the conductance parameters maintaining functional leech bursting activity, we applied Principal Component Analysis (PCA to each of these four groups. PCA identified a set of three maximal conductances (leak current, [Formula: see text]Leak; a persistent K current, [Formula: see text]K2; and of a persistent Na+ current, [Formula: see text]P that correlate linearly for the two groups of burster instances but not for the HCO groups. Visualizations of HCO instances in a reduced space suggested that there might be non-linear relationships between these parameters for these instances. Experimental studies have shown that period is a key attribute influenced by modulatory inputs and temperature variations in heart interneurons. Thus, we explored the sensitivity of period to changes in maximal conductances of [Formula: see text]Leak, [Formula: see text]K2, and [Formula: see text]P, and we found that for our realistic bursters the effect of these parameters on period could not be assessed because when varied individually bursting activity was not maintained.

  9. GAMMA-RAY BURSTS, NEW COSMOLOGICAL BEACONS

    Directory of Open Access Journals (Sweden)

    V. Avila-Reese

    2009-01-01

    Full Text Available Long Gamma-Ray Bursts (GRBs are the brightest electromagnetic explosions in the Universe, associated to the death of massive stars. As such, GRBs are potential tracers of the evolution of the cosmic massive star formation, metallicity, and Initial Mass Function. GRBs also proved to be appealing cosmological distance indicators. This opens a unique opportunity to constrain the cosmic expansion history up to redshifts 5-6. A brief review on both subjects is presented here.

  10. Radio flares from gamma-ray bursts

    CERN Document Server

    Kopac, D; Kobayashi, S; Virgili, F J; Harrison, R; Japelj, J; Guidorzi, C; Melandri, A; Gomboc, A

    2015-01-01

    We present predictions of centimeter and millimeter radio emission from reverse shocks in the early afterglows of gamma-ray bursts with the goal of determining their detectability with current and future radio facilities. Using a range of GRB properties, such as peak optical brightness and time, isotropic equivalent gamma-ray energy and redshift, we simulate radio light curves in a framework generalized for any circumburst medium structure and including a parametrization of the shell thickness regime that is more realistic than the simple assumption of thick- or thin-shell approximations. Building on earlier work by Mundell et al. (2007) and Melandri et al. (2010) in which the typical frequency of the reverse shock was suggested to lie at radio, rather than optical wavelengths at early times, we show that the brightest and most distinct reverse-shock radio signatures are detectable up to 0.1 -- 1 day after the burst, emphasizing the need for rapid radio follow-up. Detection is easier for bursts with later opt...

  11. The CHIME Fast Radio Burst Project

    Science.gov (United States)

    Kaspi, Victoria M.; CHIME/FRB Collaboration

    2017-01-01

    Fast Radio Bursts are a recently discovered phenomenon consisting of short (few ms) bursts of radio waves that have dispersion measures that strongly suggest an extragalactic and possibly cosmological, but yetunknown, origin. The Canadian Hydrogen Intensity Mapping Experiment was designed to study Baryon Acoustic Oscillations through mapping of redshifted hydrogen, in order to constrain the nature of Dark Energy. CHIME, currently under construction in Penticton, BC in Canada, consists of 4 cylindrical paraboloid reflectors having total collecting area 80 m x 100 m, and will be sensitive in the 400-800 MHz band. With 2048 independent feeds hung along the cylinder axes, CHIME is a transit telescope with no moving parts, but is sensitive to the full ~200 sq. degrees overhead in 1024 formed beams, thanks to the largest correlator ever built. Given CHIME's enormous sensitivity, bandwidth and unprecedented field of view for the radio regime, CHIME will be a superb instrument for studying Fast Radio Bursts, with expected detected event rates of several to several dozen per day, hence promising major progress on the origin and nature of FRBs.

  12. Composite-flywheel burst-containment study

    Energy Technology Data Exchange (ETDEWEB)

    Sapowith, A D; Handy, W E

    1982-04-08

    A key component impacting total flywheel energy storage system weight is the containment structure. This report addresses the factors that shape this structure and define its design criteria. In addition, containment weight estimates are made for the several composite flywheel designs of interest so that judgements can be made as to the relative weights of their containment structure. The requirements set down for this program were that all containment weight estimates be based on a 1 kWh burst. It should be noted that typical flywheel requirements for regenerative braking of small automobiles call for deliverable energies of 0.25 kWh. This leads to expected maximum burst energies of 0.5 kWh. The flywheels studied are those considered most likely to be carried further for operational design. These area: The pseudo isotropic disk flywheel, sometimes called the alpha ply; the SMC molded disk; either disk with a carbon ring; the subcircular rim with cruciform hub; and Avco's bi-directional circular weave disk. The flywheel materials for the disk are S-glass; the subcircular rim is Kevlar over S-glass. Test data on flywheel bursts and containment failures were analyzed. Recommendations are made for further testing.

  13. Developing Benchmarks for Solar Radio Bursts

    Science.gov (United States)

    Biesecker, D. A.; White, S. M.; Gopalswamy, N.; Black, C.; Domm, P.; Love, J. J.; Pierson, J.

    2016-12-01

    Solar radio bursts can interfere with radar, communication, and tracking signals. In severe cases, radio bursts can inhibit the successful use of radio communications and disrupt a wide range of systems that are reliant on Position, Navigation, and Timing services on timescales ranging from minutes to hours across wide areas on the dayside of Earth. The White House's Space Weather Action Plan has asked for solar radio burst intensity benchmarks for an event occurrence frequency of 1 in 100 years and also a theoretical maximum intensity benchmark. The solar radio benchmark team was also asked to define the wavelength/frequency bands of interest. The benchmark team developed preliminary (phase 1) benchmarks for the VHF (30-300 MHz), UHF (300-3000 MHz), GPS (1176-1602 MHz), F10.7 (2800 MHz), and Microwave (4000-20000) bands. The preliminary benchmarks were derived based on previously published work. Limitations in the published work will be addressed in phase 2 of the benchmark process. In addition, deriving theoretical maxima requires additional work, where it is even possible to, in order to meet the Action Plan objectives. In this presentation, we will present the phase 1 benchmarks and the basis used to derive them. We will also present the work that needs to be done in order to complete the final, or phase 2 benchmarks.

  14. Dihydroxyoctadecamonoenoate esters inhibit the neutrophil respiratory burst

    Indian Academy of Sciences (India)

    David Alan Thompson; Bruce D Hammock

    2007-03-01

    The leukotoxins [9(10)- and 12(13)-EpOME] are produced by activated inflammatory leukocytes such as neutrophils. High EpOME levels are observed in disorders such as acute respiratory distress syndrome and in patients with extensive burns. Although the physiological significance of the EpOMEs remains poorly understood, in some systems, the EpOMEs act as a protoxin, with their corresponding epoxide hydrolase metabolites, 9,10- and 12,13-DiHOME, specifically exerting toxicity. Both the EpOMEs and the DiHOMEs were also recently shown to have neutrophil chemotactic activity. We evaluated whether the neutrophil respiratory burst, a surge of oxidant production thought to play an important role in limiting certain bacterial and fungal infections, is modulated by members of the EpOME metabolic pathway. We present evidence that the DiHOMEs suppress the neutrophil respiratory burst by a mechanism distinct from that of respiratory burst inhibitors such as cyclosporin H or lipoxin A4, which inhibit multiple aspects of neutrophil activation.

  15. RADIO FLARES FROM GAMMA-RAY BURSTS

    Energy Technology Data Exchange (ETDEWEB)

    Kopač, D.; Mundell, C. G.; Kobayashi, S.; Virgili, F. J. [Astrophysics Research Institute, Liverpool John Moores University, Liverpool, L3 5RF (United Kingdom); Harrison, R. [Department of Astrophysics, School of Physics and Astronomy, Tel Aviv University, 69978 Tel Aviv (Israel); Japelj, J.; Gomboc, A. [Faculty of Mathematics and Physics, University of Ljubljana, Jadranska 19, 1000 Ljubljana (Slovenia); Guidorzi, C. [Department of Physics and Earth Sciences, University of Ferrara, Via Saragat, 1, I-44122 Ferrara (Italy); Melandri, A., E-mail: D.Kopac@ljmu.ac.uk [INAF/Brera Astronomical Observatory, via Bianchi 46, I-23807, Merate (Italy)

    2015-06-20

    We present predictions of centimeter and millimeter radio emission from reverse shocks (RSs) in the early afterglows of gamma-ray bursts (GRBs) with the goal of determining their detectability with current and future radio facilities. Using a range of GRB properties, such as peak optical brightness and time, isotropic equivalent gamma-ray energy, and redshift, we simulate radio light curves in a framework generalized for any circumburst medium structure and including a parameterization of the shell thickness regime that is more realistic than the simple assumption of thick- or thin-shell approximations. Building on earlier work by Mundell et al. and Melandri et al. in which the typical frequency of the RS was suggested to lie at radio rather than optical wavelengths at early times, we show that the brightest and most distinct RS radio signatures are detectable up to 0.1–1 day after the burst, emphasizing the need for rapid radio follow-up. Detection is easier for bursts with later optical peaks, high isotropic energies, lower circumburst medium densities, and at observing frequencies that are less prone to synchrotron self-absorption effects—typically above a few GHz. Given recent detections of polarized prompt gamma-ray and optical RS emission, we suggest that detection of polarized radio/millimeter emission will unambiguously confirm the presence of low-frequency RSs at early time.

  16. Black Hole Accretion in Gamma Ray Bursts

    Directory of Open Access Journals (Sweden)

    Agnieszka Janiuk

    2017-02-01

    Full Text Available We study the structure and evolution of the hyperaccreting disks and outflows in the gamma ray bursts central engines. The torus around a stellar mass black hole is composed of free nucleons, Helium, electron-positron pairs, and is cooled by neutrino emission. Accretion of matter powers the relativistic jets, responsible for the gamma ray prompt emission. The significant number density of neutrons in the disk and outflowing material will cause subsequent formation of heavier nuclei. We study the process of nucleosynthesis and its possible observational consequences. We also apply our scenario to the recent observation of the gravitational wave signal, detected on 14 September 2015 by the two Advanced LIGO detectors, and related to an inspiral and merger of a binary black hole system. A gamma ray burst that could possibly be related with the GW150914 event was observed by the Fermi satellite. It had a duration of about 1 s and appeared about 0.4 s after the gravitational-wave signal. We propose that a collapsing massive star and a black hole in a close binary could lead to the event. The gamma ray burst was powered by a weak neutrino flux produced in the star remnant’s matter. Low spin and kick velocity of the merged black hole are reproduced in our simulations. Coincident gravitational-wave emission originates from the merger of the collapsed core and the companion black hole.

  17. Vibration-induced drop atomization and bursting

    Science.gov (United States)

    James, A. J.; Vukasinovic, B.; Smith, Marc K.; Glezer, A.

    2003-02-01

    A liquid drop placed on a vibrating diaphragm will burst into a fine spray of smaller secondary droplets if it is driven at the proper frequency and amplitude. The process begins when capillary waves appear on the free surface of the drop and then grow in amplitude and complexity as the acceleration amplitude of the diaphragm is slowly increased from zero. When the acceleration of the diaphragm rises above a well-defined critical value, small secondary droplets begin to be ejected from the free-surface wave crests. Then, quite suddenly, the entire volume of the drop is ejected from the vibrating diaphragm in the form of a spray. This event is the result of an interaction between the fluid dynamical process of droplet ejection and the vibrational dynamics of the diaphragm. During droplet ejection, the effective mass of the drop diaphragm system decreases and the resonance frequency of the system increases. If the initial forcing frequency is above the resonance frequency of the system, droplet ejection causes the system to move closer to resonance, which in turn causes more vigorous vibration and faster droplet ejection. This ultimately leads to drop bursting. In this paper, the basic phenomenon of vibration-induced drop atomization and drop bursting will be introduced, demonstrated, and characterized. Experimental results and a simple mathematical model of the process will be presented and used to explain the basic physics of the system.

  18. A Fast Radio Burst Host Galaxy

    CERN Document Server

    Keane, E F; Bhandari, S; Barr, E; Bhat, N D R; Burgay, M; Caleb, M; Flynn, C; Jameson, A; Kramer, M; Petroff, E; Possenti, A; van Straten, W; Bailes, M; Burke-Spolaor, S; Eatough, R P; Stappers, B W; Totani, T; Honma, M; Furusawa, H; Hattori, T; Morokuma, T; Niino, Y; Sugai, H; Terai, T; Tominaga, N; Yamasaki, S; Yasuda, N; Allen, R; Cooke, J; Jencson, J; Kasliwal, M M; Kaplan, D L; Tingay, S J; Williams, A; Wayth, R; Chandra, P; Perrodin, D; Berezina, M; Mickaliger, M; Bassa, C

    2016-01-01

    In recent years, millisecond duration radio signals originating from distant galaxies appear to have been discovered in the so-called Fast Radio Bursts. These signals are dispersed according to a precise physical law and this dispersion is a key observable quantity which, in tandem with a redshift measurement, can be used for fundamental physical investigations. While every fast radio burst has a dispersion measurement, none before now have had a redshift measurement, due to the difficulty in pinpointing their celestial coordinates. Here we present the discovery of a fast radio burst and the identification of a fading radio transient lasting $\\sim 6$ days after the event, which we use to identify the host galaxy; we measure the galaxy's redshift to be $z=0.492\\pm0.008$. The dispersion measure and redshift, in combination, provide a direct measurement of the cosmic density of ionised baryons in the intergalactic medium of $\\Omega_{\\mathrm{IGM}}=4.9 \\pm 1.3\\%$, in agreement with the expectation from WMAP, and i...

  19. Delayed Nickel Decay in Gamma Ray Bursts

    CERN Document Server

    McLaughlin, G C

    2002-01-01

    Recently observed emission lines in the X-ray afterglow of gamma ray bursts suggest that iron group elements are either produced in the gamma ray burst, or are present nearby. If this material is the product of a thermonuclear burn, then such material would be expected to be rich in Nickel-56. If the nickel remains partially ionized, this prevents the electron capture reaction normally associated with the decay of Nickel-56, dramatically increasing the decay timescale. Here we examine the consequences of rapid ejection of a fraction of a solar mass of iron group material from the center of a collapsar/hypernova. The exact rate of decay then depends on the details of the ionization and therefore the ejection process. Future observations of iron, nickel and cobalt lines can be used to diagnose the origin of these elements and to better understand the astrophysical site of gamma ray bursts. In this model, the X-ray lines of these iron-group elements could be detected in suspected hypernovae that did not produce ...

  20. Automatic Cloud Bursting under FermiCloud

    Energy Technology Data Exchange (ETDEWEB)

    Wu, Hao [Fermilab; Shangping, Ren [IIT; Garzoglio, Gabriele [Fermilab; Timm, Steven [Fermilab; Bernabeu, Gerard [Fermilab; Kim, Hyun Woo; Chadwick, Keith; Jang, Haengjin [KISTI, Daejeon; Noh, Seo-Young [KISTI, Daejeon

    1900-01-01

    Cloud computing is changing the infrastructure upon which scientific computing depends from supercomputers and distributed computing clusters to a more elastic cloud-based structure. The service-oriented focus and elasticity of clouds can not only facilitate technology needs of emerging business but also shorten response time and reduce operational costs of traditional scientific applications. Fermi National Accelerator Laboratory (Fermilab) is currently in the process of building its own private cloud, FermiCloud, which allows the existing grid infrastructure to use dynamically provisioned resources on FermiCloud to accommodate increased but dynamic computation demand from scientists in the domains of High Energy Physics (HEP) and other research areas. Cloud infrastructure also allows to increase a private cloud’s resource capacity through “bursting” by borrowing or renting resources from other community or commercial clouds when needed. This paper introduces a joint project on building a cloud federation to support HEP applications between Fermi National Accelerator Laboratory and Korea Institution of Science and Technology Information, with technical contributions from the Illinois Institute of Technology. In particular, this paper presents two recent accomplishments of the joint project: (a) cloud bursting automation and (b) load balancer. Automatic cloud bursting allows computer resources to be dynamically reconfigured to meet users’ demands. The load balance algorithm which the cloud bursting depends on decides when and where new resources need to be allocated. Our preliminary prototyping and experiments have shown promising success, yet, they also have opened new challenges to be studied

  1. Automatic Cloud Bursting under FermiCloud

    Energy Technology Data Exchange (ETDEWEB)

    Wu, Hao [Fermilab; Shangping, Ren [IIT; Garzoglio, Gabriele [Fermilab; Timm, Steven [Fermilab; Bernabeu, Gerard [Fermilab; Kim, Hyun Woo; Chadwick, Keith; Jang, Haengjin [KISTI, Daejeon; Noh, Seo-Young [KISTI, Daejeon

    2013-01-01

    Cloud computing is changing the infrastructure upon which scientific computing depends from supercomputers and distributed computing clusters to a more elastic cloud-based structure. The service-oriented focus and elasticity of clouds can not only facilitate technology needs of emerging business but also shorten response time and reduce operational costs of traditional scientific applications. Fermi National Accelerator Laboratory (Fermilab) is currently in the process of building its own private cloud, FermiCloud, which allows the existing grid infrastructure to use dynamically provisioned resources on FermiCloud to accommodate increased but dynamic computation demand from scientists in the domains of High Energy Physics (HEP) and other research areas. Cloud infrastructure also allows to increase a private cloud’s resource capacity through “bursting” by borrowing or renting resources from other community or commercial clouds when needed. This paper introduces a joint project on building a cloud federation to support HEP applications between Fermi National Accelerator Laboratory and Korea Institution of Science and Technology Information, with technical contributions from the Illinois Institute of Technology. In particular, this paper presents two recent accomplishments of the joint project: (a) cloud bursting automation and (b) load balancer. Automatic cloud bursting allows computer resources to be dynamically reconfigured to meet users’ demands. The load balance algorithm which the cloud bursting depends on decides when and where new resources need to be allocated. Our preliminary prototyping and experiments have shown promising success, yet, they also have opened new challenges to be studied

  2. Importance of MutL homologue MLH1 and MutS homologue MSH2 expression in Turkish patients with sporadic colorectal cancer

    Institute of Scientific and Technical Information of China (English)

    Sibel Erdamar; Esra Ucaryilmaz; Gokhan Demir; Tayfun Karahasanoglu; Gulen Dogusoy; Ahmet Dirican; Suha Goksel

    2007-01-01

    AIM: To assess the incidence of MLH1 (the human MutL homologue) and MSH2 (the human MutS homologue)protein expression in Turkish patients with sporadic colorectal cancers and to compare their survival and clinicopathological features.METHODS: We validated the tissue microarray technology in 77 colorectal carcinomas by analyzing the immunohistochemical expression of proteins involved in two main pathways of colorectal carcinogenesis: p53 protein for loss of heterozygosity tumors; MLH1 and MSH2 proteins for microsatellite instability (MSI).RESULTS: Our analysis showed that 29 (39.2%) had loss of MLH1 expression, 5 (6.8%) had loss of MSH2 expression and 2 cases had loss of expression of both proteins. We found that 60% of MSH2-negative tumors were located in the right side of the colon; all MSH2-negative cases were women. In addition, the loss of MSH2 expression was correlated with low p53 expression. Neither MLH1 nor MSH2 expressions were associated with prognosis, although there seemed a tendency of longer survival (71.7 ± 8.65 mo vs 47.08 ± 5.26 mo) for the patients with MLH1-negative versus MLH1-positive carcinomas. There were not significant differences in overall and recurrence-free survival among MLH1/MSH2-positive and -negative cases.CONCLUSION: Our data supports that Turkish patients with MLH1- and MSH2-defective tumors have some distinct features from each other. Although prognostic importance remains controversial, immunohistochemical analysis of mismatch repair genes may be used as a routine histopathological examination of sporadic colorectal carcinomas.

  3. Statistical Properties of SGR 1900+14 Bursts

    Science.gov (United States)

    Gogus, Ersin; Woods, Peter M.; Kouveliotou, Chryssa; VanParadijs, Jan

    1999-01-01

    We study the statistics of soft gamma repeater (SGR) bursts using a database of 187 events detected with BATSE and 837 events detected with the Rossi X-Ray Timing Explorer Proportional Counter Array: all events are from SGR 1900+14 during its 1998-1999 active phase. We find that the fluence or energy distribution of bursts is consistent with a power law of index 1.66, over 4 orders of magnitude. This scale-free distribution resembles the Gutenberg-Richter law for earthquakes and gives evidence for self-organized criticality in SGRS. The distribution of time intervals between successive bursts from SGR 1900+14 is consistent with a lognormal distribution. There is no correlation between burst intensity and the waiting times till the next burst, but there is some evidence for a correlation between burst intensity and the time elapsed since the previous burst. We also find a correlation between the duration and the energy of the bursts, but with significant scatter. In all these statistical properties, SGR bursts resemble earthquakes and solar flares more closely than they resemble any known accretion-powered or nuclear-powered phenomena. Thus, our analysis lends support to the hypothesis that the energy source for SGR bursts is internal to the neutron star and plausibly magnetic.

  4. Glucose oxidase immobilization onto carbon nanotube networking

    CERN Document Server

    Karachevtsev, V A; Zarudnev, E S; Karachevtsev, M V; Leontiev, V S; Linnik, A S; Lytvyn, O S; Plokhotnichenko, A M; Stepanian, S G

    2012-01-01

    When elaborating the biosensor based on single-walled carbon nanotubes (SWNTs), it is necessary to solve such an important problem as the immobilization of a target biomolecule on the nanotube surface. In this work, the enzyme (glucose oxidase (GOX)) was immobilized on the surface of a nanotube network, which was created by the deposition of nanotubes from their solution in 1,2-dichlorobenzene by the spray method. 1-Pyrenebutanoic acid succinimide ester (PSE) was used to form the molecular interface, the bifunctional molecule of which provides the covalent binding with the enzyme shell, and its other part (pyrene) is adsorbed onto the nanotube surface. First, the usage of such a molecular interface leaves out the direct adsorption of the enzyme (in this case, its activity decreases) onto the nanotube surface, and, second, it ensures the enzyme localization near the nanotube. The comparison of the resonance Raman (RR) spectrum of pristine nanotubes with their spectrum in the PSE environment evidences the creat...

  5. Characterization of Glucose Oxidase from Penicillium notatum

    Directory of Open Access Journals (Sweden)

    Nabeela Saleem

    2009-01-01

    Full Text Available In the present study glucose oxidase (GOD has been isolated from a culture filtrate of Penicillium notatum. The enzyme was purified by ammonium sulphate precipitation, diethylaminoethyl (DEAE cellulose ion-exchange chromatography and Sephadex gel filtration. This protocol gave 16.47-fold purification and 25 % recovery of the enzyme. The optimum pH and temperature for the activity were 5.4 and 45 °C, respectively. The Km and vmax values for the enzyme were 10.5 mM and 456 U/mg, respectively. A detailed kinetic study of thermal inactivation was carried out. Both enthalpy of activation (ΔH* and entropy of activation (ΔS* decreased at higher temperatures. Moreover, free energy of denaturation (ΔG* increased at higher temperature, making the enzyme thermally stable. A possible explanation for the thermal inactivation of GOD at higher temperatures is also discussed.

  6. Dynamic encoding of natural luminance sequences by LGN bursts.

    Directory of Open Access Journals (Sweden)

    Nicholas A Lesica

    2006-07-01

    Full Text Available In the lateral geniculate nucleus (LGN of the thalamus, visual stimulation produces two distinct types of responses known as tonic and burst. Due to the dynamics of the T-type Ca(2+ channels involved in burst generation, the type of response evoked by a particular stimulus depends on the resting membrane potential, which is controlled by a network of modulatory connections from other brain areas. In this study, we use simulated responses to natural scene movies to describe how modulatory and stimulus-driven changes in LGN membrane potential interact to determine the luminance sequences that trigger burst responses. We find that at low resting potentials, when the T channels are de-inactivated and bursts are relatively frequent, an excitatory stimulus transient alone is sufficient to evoke a burst. However, to evoke a burst at high resting potentials, when the T channels are inactivated and bursts are relatively rare, prolonged inhibitory stimulation followed by an excitatory transient is required. We also observe evidence of these effects in vivo, where analysis of experimental recordings demonstrates that the luminance sequences that trigger bursts can vary dramatically with the overall burst percentage of the response. To characterize the functional consequences of the effects of resting potential on burst generation, we simulate LGN responses to different luminance sequences at a range of resting potentials with and without a mechanism for generating bursts. Using analysis based on signal detection theory, we show that bursts enhance detection of specific luminance sequences, ranging from the onset of excitatory sequences at low resting potentials to the offset of inhibitory sequences at high resting potentials. These results suggest a dynamic role for burst responses during visual processing that may change according to behavioral state.

  7. Characterizing Oscillatory Bursts in Single-Trial EEG Data

    Science.gov (United States)

    Knuth, K. H.; Shah, A. S.; Lakatos, P.; Schroeder, C. E.

    2004-01-01

    Oscillatory bursts in numerous bands ranging from low (theta) to high frequencies (e.g., gamma) undoubtedly play an important role in cortical dynamics. Largely because of the inadequacy of existing analytic techniques. however, oscillatory bursts and their role in cortical processing remains poorly understood. To study oscillatory bursts effectively one must be able to isolate them and characterize them in the single trial. We describe a series of straightforward analysis techniques that produce useful indices of burst characteristics. First, stimulus-evoked responses are estimated using Differentially Variable Component Analysis (dVCA), and are subtracted from the single-trial. The single-trial characteristics of the evoked responses are stored to identify possible correlations with burst activity. Time-frequency (T-F), or wavelet, analyses are then applied to the single trial residuals. While T-F plots have been used in recent studies to identify and isolate bursts, we go further by fitting each burst in the T-F plot with a two-dimensional Gaussian. This provides a set of burst characteristics, such as, center time. burst duration, center frequency. frequency dispersion. and amplitude, all of which contribute to the accurate characterization of the individual burst. The burst phase can also be estimated. Burst characteristics can be quantified with several standard techniques (e.g.. histogramming and clustering), as well as Bayesian techniques (e.g., blocking) to allow a more parametric description analysis of the characteristics of oscillatory bursts, and the relationships of specific parameters to cortical excitability and stimulus integration.

  8. Characterizing Oscillatory Bursts in Single-Trial EEG Data

    Science.gov (United States)

    Knuth, K. H.; Shah, A. S.; Lakatos, P.; Schroeder, C. E.

    2004-01-01

    Oscillatory bursts in numerous bands ranging from low (theta) to high frequencies (e.g., gamma) undoubtedly play an important role in cortical dynamics. Largely because of the inadequacy of existing analytic techniques. however, oscillatory bursts and their role in cortical processing remains poorly understood. To study oscillatory bursts effectively one must be able to isolate them and characterize them in the single trial. We describe a series of straightforward analysis techniques that produce useful indices of burst characteristics. First, stimulus-evoked responses are estimated using Differentially Variable Component Analysis (dVCA), and are subtracted from the single-trial. The single-trial characteristics of the evoked responses are stored to identify possible correlations with burst activity. Time-frequency (T-F), or wavelet, analyses are then applied to the single trial residuals. While T-F plots have been used in recent studies to identify and isolate bursts, we go further by fitting each burst in the T-F plot with a two-dimensional Gaussian. This provides a set of burst characteristics, such as, center time. burst duration, center frequency. frequency dispersion. and amplitude, all of which contribute to the accurate characterization of the individual burst. The burst phase can also be estimated. Burst characteristics can be quantified with several standard techniques (e.g.. histogramming and clustering), as well as Bayesian techniques (e.g., blocking) to allow a more parametric description analysis of the characteristics of oscillatory bursts, and the relationships of specific parameters to cortical excitability and stimulus integration.

  9. Portability of oxidase domains in nonribosomal peptide synthetase modules.

    Science.gov (United States)

    Schneider, Tanya L; Walsh, Christopher T

    2004-12-21

    Oxazole and thiazole rings are present in numerous nonribosomal peptide natural products. Oxidase domains are responsible for catalyzing the oxidation of thiazolines and oxazolines to yield fully aromatic heterocycles. Unlike most domains, the placement of oxidase domains within assembly line modules varies. Noting this tolerance, we investigated the portability of an oxidase domain to a heterologous assembly line. The epimerase domain of PchE, involved in pyochelin biosynthesis, was replaced with the oxidase domain from MtaD, involved in myxothiazol biosynthesis. The chimeric module was expressed in soluble form as a flavin mononucleotide-containing flavoprotein. The functionality of the inserted oxidase domain was assayed within PchE and in transfer of the growing siderophore acyl chain from PchE to the next downstream module. While pyochelin-like product release was not observed downstream, the robust activity of the transplanted oxidase domain and the ability of the chimeric module to produce an advanced intermediate bound to the synthetase underscore the possibility of future engineering within nonribosomal peptide synthetase pathways using oxidase domains.

  10. Direct regulation of cytochrome c oxidase by calcium ions.

    Directory of Open Access Journals (Sweden)

    Tatiana Vygodina

    Full Text Available Cytochrome c oxidase from bovine heart binds Ca(2+ reversibly at a specific Cation Binding Site located near the outer face of the mitochondrial membrane. Ca(2+ shifts the absorption spectrum of heme a, which allowed previously to determine the kinetics and equilibrium characteristics of the binding. However, no effect of Ca(2+ on the functional characteristics of cytochrome oxidase was revealed earlier. Here we report that Ca(2+ inhibits cytochrome oxidase activity of isolated bovine heart enzyme by 50-60% with Ki of ∼1 µM, close to Kd of calcium binding with the oxidase determined spectrophotometrically. The inhibition is observed only at low, but physiologically relevant, turnover rates of the enzyme (∼10 s(-1 or less. No inhibitory effect of Ca(2+ is observed under conventional conditions of cytochrome c oxidase activity assays (turnover number >100 s(-1 at pH 8, which may explain why the effect was not noticed earlier. The inhibition is specific for Ca(2+ and is reversed by EGTA. Na(+ ions that compete with Ca(2+ for binding with the Cation Binding Site, do not affect significantly activity of the enzyme but counteract the inhibitory effect of Ca(2+. The Ca(2+-induced inhibition of cytochrome c oxidase is observed also with the uncoupled mitochondria from several rat tissues. At the same time, calcium ions do not inhibit activity of the homologous bacterial cytochrome oxidases. Possible mechanisms of the inhibition are discussed as well as potential physiological role of Ca(2+ binding with cytochrome oxidase. Ca(2+- binding at the Cation Binding Site is proposed to inhibit proton-transfer through the exit part of the proton conducting pathway H in the mammalian oxidases.

  11. CotA, a multicopper oxidase from Bacillus pumilus WH4, exhibits manganese-oxidase activity.

    Directory of Open Access Journals (Sweden)

    Jianmei Su

    Full Text Available Multicopper oxidases (MCOs are a family of enzymes that use copper ions as cofactors to oxidize various substrates. Previous research has demonstrated that several MCOs such as MnxG, MofA and MoxA can act as putative Mn(II oxidases. Meanwhile, the endospore coat protein CotA from Bacillus species has been confirmed as a typical MCO. To study the relationship between CotA and the Mn(II oxidation, the cotA gene from a highly active Mn(II-oxidizing strain Bacillus pumilus WH4 was cloned and overexpressed in Escherichia coli strain M15. The purified CotA contained approximately four copper atoms per molecule and showed spectroscopic properties typical of blue copper oxidases. Importantly, apart from the laccase activities, the CotA also displayed substantial Mn(II-oxidase activities both in liquid culture system and native polyacrylamide gel electrophoresis. The optimum Mn(II oxidase activity was obtained at 53°C in HEPES buffer (pH 8.0 supplemented with 0.8 mM CuCl2. Besides, the addition of o-phenanthroline and EDTA both led to a complete suppression of Mn(II-oxidizing activity. The specific activity of purified CotA towards Mn(II was 0.27 U/mg. The Km, Vmax and kcat values towards Mn(II were 14.85±1.17 mM, 3.01×10(-6±0.21 M·min(-1 and 0.32±0.02 s(-1, respectively. Moreover, the Mn(II-oxidizing activity of the recombinant E. coli strain M15-pQE-cotA was significantly increased when cultured both in Mn-containing K liquid medium and on agar plates. After 7-day liquid cultivation, M15-pQE-cotA resulted in 18.2% removal of Mn(II from the medium. Furthermore, the biogenic Mn oxides were clearly observed on the cell surfaces of M15-pQE-cotA by scanning electron microscopy. To our knowledge, this is the first report that provides the direct observation of Mn(II oxidation with the heterologously expressed protein CotA, Therefore, this novel finding not only establishes the foundation for in-depth study of Mn(II oxidation mechanisms, but also offers

  12. Ultrastable bonding of glass with femtosecond laser bursts

    Science.gov (United States)

    Richter, Sören; Zimmermann, Felix; Döring, Sven; Tünnermann, Andreas; Nolte, Stefan

    2013-03-01

    We report on the welding of fused silica with bursts of ultrashort laser pulses. The bursts consist of ultrashort laser pulses with a repetition rate of 9.4 MHz. However, the time between the laser bursts is about 10 μs, which reduces the maximal temperature rise. Micrographs and simulations show that the molten structures are enlarged while using laser bursts. In addition, the usage of bursts instead of continuous pulse trains reduces the laser induced stress. By optimizing the burst frequency and repetition rate we were able to achieve a breaking resistance of up to 96% of the bulk material, which is significantly higher than in conventional high repetition rate laser bonding.

  13. Generation of burst time plans for the Intelsat TDMA system

    Science.gov (United States)

    Trusty, P. A.; King, C. A.; Roach, P. W.

    In the Intelsat time-division multiple-access (TDMA) system, the burst time plan (BTP) contains the assignments of traffic and reference bursts, common acquisition windows, and test slots to time slots within the TDMA frame for a given network. Generation of the BTP involves the processes of sub-burst formation, burst formation, reference burst assignments, and burst scheduling. BTP information is transferred to the individual reference and traffic stations in the form of a master time plan (MTP) and a condensed time plan (CTP). This paper describes algorithms which have been developed for each of the BTP generation processes, as well as those algorithms and procedures used to generate the MTPs and CTPs. A software system which implements these algorithms is also discussed.

  14. Gamma-Ray Bursts in the Swift Era

    CERN Document Server

    Gehrels, N; Fox, D B; 10.1146/annurev.astro.46.060407.145147

    2009-01-01

    With its rapid-response capability and multiwavelength complement of instruments, the Swift satellite has transformed our physical understanding of gamma-ray bursts (GRBs). Providing high-quality observations of hundreds of bursts, and facilitating a wide range of follow-up observations within seconds of each event, Swift has revealed an unforeseen richness in observed burst properties, shed light on the nature of short-duration bursts, and helped realize the promise of GRBs as probes of the processes and environments of star formation out to the earliest cosmic epochs. These advances have opened new perspectives on the nature and properties of burst central engines, interactions with the burst environment from microparsec to gigaparsec scales, and the possibilities for non-photonic signatures. Our understanding of these extreme cosmic sources has thus advanced substantially; yet more than 40 years after their discovery, GRBs continue to present major challenges on both observational and theoretical fronts.

  15. Multilayered polyelectrolyte microcapsules: interaction with the enzyme cytochrome C oxidase.

    Science.gov (United States)

    Pastorino, Laura; Dellacasa, Elena; Noor, Mohamed R; Soulimane, Tewfik; Bianchini, Paolo; D'Autilia, Francesca; Antipov, Alexei; Diaspro, Alberto; Tofail, Syed A M; Ruggiero, Carmelina

    2014-01-01

    Cell-sized polyelectrolyte capsules functionalized with a redox-driven proton pump protein were assembled for the first time. The interaction of polyelectrolyte microcapsules, fabricated by electrostatic layer-by-layer assembly, with cytochrome c oxidase molecules was investigated. We found that the cytochrome c oxidase retained its functionality, that the functionalized microcapsules interacting with cytochrome c oxidase were permeable and that the permeability characteristics of the microcapsule shell depend on the shell components. This work provides a significant input towards the fabrication of an integrated device made of biological components and based on specific biomolecular functions and properties.

  16. Multilayered polyelectrolyte microcapsules: interaction with the enzyme cytochrome C oxidase.

    Directory of Open Access Journals (Sweden)

    Laura Pastorino

    Full Text Available Cell-sized polyelectrolyte capsules functionalized with a redox-driven proton pump protein were assembled for the first time. The interaction of polyelectrolyte microcapsules, fabricated by electrostatic layer-by-layer assembly, with cytochrome c oxidase molecules was investigated. We found that the cytochrome c oxidase retained its functionality, that the functionalized microcapsules interacting with cytochrome c oxidase were permeable and that the permeability characteristics of the microcapsule shell depend on the shell components. This work provides a significant input towards the fabrication of an integrated device made of biological components and based on specific biomolecular functions and properties.

  17. Vaccination against Bm86 Homologues in Rabbits Does Not Impair Ixodes ricinus Feeding or Oviposition.

    Directory of Open Access Journals (Sweden)

    Jeroen Coumou

    Full Text Available Human tick-borne diseases that are transmitted by Ixodes ricinus, such as Lyme borreliosis and tick borne encephalitis, are on the rise in Europe. Diminishing I. ricinus populations in nature can reduce tick exposure to humans, and one way to do so is by developing an anti-vector vaccine against tick antigens. Currently, there is only one anti-vector vaccine available against ticks, which is a veterinary vaccine based on the tick antigen Bm86 in the gut of Rhipicephalus microplus. Bm86 vaccine formulations cause a reduction in the number of Rhipicephalus microplus ticks that successfully feed, i.e. lower engorgement weights and a decrease in the number of oviposited eggs. Furthermore, Bm86 vaccines reduce transmission of bovine Babesia spp. Previously two conserved Bm86 homologues in I. ricinus ticks, designated as Ir86-1 and Ir86-2, were described. Here we investigated the effect of a vaccine against recombinant Ir86-1, Ir86-2 or a combination of both on Ixodes ricinus feeding. Recombinant Ixodes ricinus Bm86 homologues were expressed in a Drosophila expression system and rabbits were immunized with rIr86-1, rIr86-2, a combination of both or ovalbumin as a control. Each animal was infested with 50 female adults and 50 male adults Ixodes ricinus and tick mortality, engorgement weights and egg mass were analyzed. Although serum IgG titers against rIr86 proteins were elicited, no effect was found on tick feeding between the rIr86 vaccinated animals and ovalbumin vaccinated animals. We conclude that vaccination against Bm86 homologues in Ixodes ricinus is not an effective approach to control Ixodes ricinus populations, despite the clear effects of Bm86 vaccination against Rhipicephalus microplus.

  18. The TFL1 homologue KSN is a regulator of continuous flowering in rose and strawberry.

    Science.gov (United States)

    Iwata, Hikaru; Gaston, Amèlia; Remay, Arnaud; Thouroude, Tatiana; Jeauffre, Julien; Kawamura, Koji; Oyant, Laurence Hibrand-Saint; Araki, Takashi; Denoyes, Béatrice; Foucher, Fabrice

    2012-01-01

    Flowering is a key event in plant life, and is finely tuned by environmental and endogenous signals to adapt to different environments. In horticulture, continuous flowering (CF) is a popular trait introduced in a wide range of cultivated varieties. It played an essential role in the tremendous success of modern roses and woodland strawberries in gardens. CF genotypes flower during all favourable seasons, whereas once-flowering (OF) genotypes only flower in spring. Here we show that in rose and strawberry continuous flowering is controlled by orthologous genes of the TERMINAL FLOWER 1 (TFL1) family. In rose, six independent pairs of CF/OF mutants differ in the presence of a retrotransposon in the second intron of the TFL1 homologue. Because of an insertion of the retrotransposon, transcription of the gene is blocked in CF roses and the absence of the floral repressor provokes continuous blooming. In OF-climbing mutants, the retrotransposon has recombined to give an allele bearing only the long terminal repeat element, thus restoring a functional allele. In OF roses, seasonal regulation of the TFL1 homologue may explain the seasonal flowering, with low expression in spring to allow the first bloom. In woodland strawberry, Fragaria vesca, a 2-bp deletion in the coding region of the TFL1 homologue introduces a frame shift and is responsible for CF behaviour. A diversity analysis has revealed that this deletion is always associated with the CF phenotype. Our results demonstrate a new role of TFL1 in perennial plants in maintaining vegetative growth and modifying flowering seasonality.

  19. Vaccination against Bm86 Homologues in Rabbits Does Not Impair Ixodes ricinus Feeding or Oviposition

    Science.gov (United States)

    Coumou, Jeroen; Wagemakers, Alex; Trentelman, Jos J.; Nijhof, Ard M.; Hovius, Joppe W.

    2015-01-01

    Human tick-borne diseases that are transmitted by Ixodes ricinus, such as Lyme borreliosis and tick borne encephalitis, are on the rise in Europe. Diminishing I. ricinus populations in nature can reduce tick exposure to humans, and one way to do so is by developing an anti-vector vaccine against tick antigens. Currently, there is only one anti-vector vaccine available against ticks, which is a veterinary vaccine based on the tick antigen Bm86 in the gut of Rhipicephalus microplus. Bm86 vaccine formulations cause a reduction in the number of Rhipicephalus microplus ticks that successfully feed, i.e. lower engorgement weights and a decrease in the number of oviposited eggs. Furthermore, Bm86 vaccines reduce transmission of bovine Babesia spp. Previously two conserved Bm86 homologues in I. ricinus ticks, designated as Ir86-1 and Ir86-2, were described. Here we investigated the effect of a vaccine against recombinant Ir86-1, Ir86-2 or a combination of both on Ixodes ricinus feeding. Recombinant Ixodes ricinus Bm86 homologues were expressed in a Drosophila expression system and rabbits were immunized with rIr86-1, rIr86-2, a combination of both or ovalbumin as a control. Each animal was infested with 50 female adults and 50 male adults Ixodes ricinus and tick mortality, engorgement weights and egg mass were analyzed. Although serum IgG titers against rIr86 proteins were elicited, no effect was found on tick feeding between the rIr86 vaccinated animals and ovalbumin vaccinated animals. We conclude that vaccination against Bm86 homologues in Ixodes ricinus is not an effective approach to control Ixodes ricinus populations, despite the clear effects of Bm86 vaccination against Rhipicephalus microplus. PMID:25919587

  20. Knockdown of the putative Lifeguard homologue CG3814 in neurons of Drosophila melanogaster.

    Science.gov (United States)

    M'Angale, P G; Staveley, B E

    2016-12-19

    Lifeguard is an integral transmembrane protein that modulates FasL-mediated apoptosis by interfering with the activation of caspase 8. It is evolutionarily conserved, with homologues present in plants, nematodes, zebra fish, frog, chicken, mouse, monkey, and human. The Lifeguard homologue in Drosophila, CG3814, contains the Bax inhibitor-1 family motif of unknown function. Downregulation of Lifeguard disrupts cellular homeostasis and disease by sensitizing neurons to FasL-mediated apoptosis. We used bioinformatic analyses to identify CG3814, a putative homologue of Lifeguard, and knocked down CG3814/LFG expression under the control of the Dopa decarboxylase (Ddc-Gal4) transgene in Drosophila melanogaster neurons to investigate whether it possesses neuroprotective activity. Knockdown of CG3814/LFG in Ddc-Gal4-expressing neurons resulted in a shortened lifespan and impaired locomotor ability, phenotypes that are strongly associated with the degeneration and loss of dopaminergic neurons. Lifeguard interacts with anti-apoptotic Bcl-2 proteins and possibly pro-apoptotic proteins to exert its neuroprotective function. The co-expression of Buffy, the sole anti-apoptotic Bcl-2 gene family member in Drosophila, and CG3814/LFG by stable inducible RNA interference, suppresses the shortened lifespan and the premature age-dependent loss in climbing ability. Suppression of CG3814/LFG in the Drosophila eye reduces the number of ommatidia and increases disruption of the ommatidial array. Overexpression of Buffy, along with the knockdown of CG3814/LFG, counteracts the eye phenotypes. Knockdown of CG3814/LFG in Ddc-Gal4-expressing neurons in Drosophila diminishes its neuroprotective ability and results in a shortened lifespan and loss of climbing ability, phenotypes that are improved upon overexpression of the pro-survival Buffy.

  1. Physical characterization of the Skua fast burst assembly

    Energy Technology Data Exchange (ETDEWEB)

    Paternoster, R.; Bounds, J.; Sanchez, R.; Miko, D.

    1994-08-01

    In this paper we discuss the system design and ongoing efforts to characterize the machine physics and operating properties of the Skua fast burst assembly. The machine is currently operating up to prompt critical while we await approval for super-prompt burst operations. Efforts have centered on characterizing neutron kinetic properties, comparing calculated and measured temperature coefficients and power distributions, improving the burst reproducibility, examining the site-wide dose characteristics, and fitting the machine with cooling and filtration systems.

  2. Extremely long hard bursts observed by Konus-Wind

    CERN Document Server

    Pal'shin, V; Frederiks, D; Golenetskii, S; Il'Inskii, V; Mazets, E; Yamaoka, K; Ohno, M; Hurley, K; Sakamoto, T; Oleynik, P; Ulanov, M; Mitrofanov, I G; Golovin, D; Litvak, M L; Sanin, A B; Boynton, W; Fellows, C; Harshman, K; Shinohara, C; Starr, R; 10.1063/1.2943422

    2013-01-01

    We report the observations of the prompt emission of the extremely long hard burst, GRB 060814B, discovered by Konus-Wind and localized by the IPN. The observations reveal a smooth, hard, ~40-min long pulse followed by weaker emission seen several hours after the burst onset. We also present the Konus-Wind data on similar burst, GRB 971208, localized by BATSE/IPN. And finally we discuss the different possible origins of these unusual events.

  3. Burst error correction extensions for large Reed Solomon codes

    Science.gov (United States)

    Owsley, P.

    1990-01-01

    Reed Solomon codes are powerful error correcting codes that include some of the best random and burst correcting codes currently known. It is well known that an (n,k) Reed Solomon code can correct up to (n - k)/2 errors. Many applications utilizing Reed Solomon codes require corrections of errors consisting primarily of bursts. In this paper, it is shown that the burst correcting ability of Reed Solomon codes can be increased beyond (n - k)/2 with an acceptable probability of miscorrect.

  4. The bursting of housing bubble as jamming phase transition

    Science.gov (United States)

    Nishinari, Katsuhiro; Iwamura, Mitsuru; Umeno Saito, Yukiko; Watanabe, Tsutomu

    2010-04-01

    In this paper, we have proposed a bubble burst model by focusing on transaction volume incorporating a traffic model that represents spontaneous traffic jam. We find that the phenomenon of bubble burst shares many similar properties with traffic jam formation on highway by comparing data taken from the U.S. housing market. Our result suggests that transaction volume could be a driving force of bursting phenomenon.

  5. Plasmodium falciparum Histone Acetyltransferase, a Yeast GCN5 Homologue Involved in Chromatin Remodeling

    Institute of Scientific and Technical Information of China (English)

    QiFan; LijiaAn; LiwangCui

    2005-01-01

    The yeast transcriptional coactivator GCN5 (yGCN5), a histone acetyltransferase (HAT), is part of large multimeric complexes that are required for chromatin remodeling and transcriptional activation. Like other eukaryotes, the malaria parasite DNA is organized into nucleosomes and the genome encodes components of chromatin-remodeling complexes. Here we show that GCN5 is conserved in Plasmodium species and that the most homologous regions are within the HAT domain and the bromodomain. The Plasmodiumfalclparum GCN5 homologue (PfGCN5) is spliced with three introns, encoding a protein of 1,464 residues. Mapping of the ends of the PfGCN5 transcript suggests that the mRNA is 5.2 to 5.4 kb, consistent with the result from Northern analysis. Using free core histones, we determined that recombinant PfGCN5 proteins have conserved HAT activity with a substrate preference for histone H3. Using substrate-specific antibodies, we determined that both Lys-8 and -14 of H3 were acetylated by the recombinant PfGCN5. In eukaryotes, GCN5 homologues interact with yeast ADA2 homologues and form large multiprotein HAT complexes. We have identified an ADA2 homologue in P. falciparum, PfADA2. Yeast two-hybrid and in vitro binding assays verified the interactions between PfGCN5 and PfADA2, suggesting that they may be associated with each other in vivo. The conserved function of the HAT domain in PfGCN5 was further illustrated with yeast complementation experiments, which showed that the PfGCN5 region corresponding to the full-length yGCN5 could partially complement the yGCN5 deletion mutation. Furthermore, a chimera comprising the PfGCN5 HAT domain fused to the remainder of yeast GCN5 (yGCN5) fully rescued the yGCN5 deletion mutant. These data demonstrate that PfGCN5 is an authentic GCN5 family member and may exist in chromatin-remodeling complexes to regulate gene expression in P. falciparum.

  6. Molecular Cloning of a Novel Bovine Homologue of the Drosophila Tumor Suppressor Gene, Lats

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    Pervious studies demonstrate that lats, also known as warts, is a tumor suppressor gene in Drosophila[1,2]. Mutations of lats lead to an increase in cell number and organ size in Drosophila, indicating lats may be involved in organ size control. Furthermore, the high conservation of sequence and tumor suppression function of lats between Drosophila and human suggests that it may be also involved in organ size control of higher animals[3]. So here we isolated the bovine homologue of Drosophila lats. Sequence analysis indicates the bovine LATS1 to be very similar to other lats proteins.

  7. The primary structure of ammodytin L, a myotoxic phospholipase A2 homologue from Vipera ammodytes venom.

    Science.gov (United States)

    Krizaj, I; Bieber, A L; Ritonja, A; Gubensek, F

    1991-12-18

    A new myotoxic phospholipase A2 homologue, having a serine residue in position 49 instead of highly conserved aspartic acid, was found in the venom of Vipera ammodytes. The primary structure revealed additional mutations in the positions important for enzymatic activity. Tyr28 is exchanged for a histidine and Gly33 for asparagine. These changes render earlier-reported weak enzymatic activity unlikely. The role of this rather abundant venom fraction is apparently in myotoxicity, which was confirmed in the muscle-cell culture from neonatal rats. The muscle-cell culture proved to be a good tool to investigate the effects of various myotoxins on muscle cells.

  8. Partial functional complementation between human and mouse cytomegalovirus chemokine receptor homologues

    DEFF Research Database (Denmark)

    Farrell, Helen E; Abraham, Alexander M; Cardin, Rhonda D

    2011-01-01

    The human cytomegalovirus (CMV) proteins US28 and UL33 are homologous to chemokine receptors (CKRs). Knockout of the mouse CMV M33 protein (UL33 homologue) results in substantial attenuation of salivary gland infection/replication and reduced efficiency of reactivation from tissue explants. M33......-mediated G protein-coupled signaling is critical for the salivary gland phenotype. In this report, we demonstrate that US28 and (to a lesser degree) UL33 restore reactivation from tissue explants and partially restore replication in salivary glands (compared to a signaling-deficient M33 mutant...

  9. Emergent synchronous bursting of oxytocin neuronal network.

    Directory of Open Access Journals (Sweden)

    Enrico Rossoni

    Full Text Available When young suckle, they are rewarded intermittently with a let-down of milk that results from reflex secretion of the hormone oxytocin; without oxytocin, newly born young will die unless they are fostered. Oxytocin is made by magnocellular hypothalamic neurons, and is secreted from their nerve endings in the pituitary in response to action potentials (spikes that are generated in the cell bodies and which are propagated down their axons to the nerve endings. Normally, oxytocin cells discharge asynchronously at 1-3 spikes/s, but during suckling, every 5 min or so, each discharges a brief, intense burst of spikes that release a pulse of oxytocin into the circulation. This reflex was the first, and is perhaps the best, example of a physiological role for peptide-mediated communication within the brain: it is coordinated by the release of oxytocin from the dendrites of oxytocin cells; it can be facilitated by injection of tiny amounts of oxytocin into the hypothalamus, and it can be blocked by injection of tiny amounts of oxytocin antagonist. Here we show how synchronized bursting can arise in a neuronal network model that incorporates basic observations of the physiology of oxytocin cells. In our model, bursting is an emergent behaviour of a complex system, involving both positive and negative feedbacks, between many sparsely connected cells. The oxytocin cells are regulated by independent afferent inputs, but they interact by local release of oxytocin and endocannabinoids. Oxytocin released from the dendrites of these cells has a positive-feedback effect, while endocannabinoids have an inhibitory effect by suppressing the afferent input to the cells.

  10. Properties of $\\gamma$-Ray Burst Classes

    CERN Document Server

    Hakkila, J; Roiger, R J; Mallozzi, R S; Pendleton, G N; Meegan, C A; Hakkila, Jon; Haglin, David J.; Roiger, Richard J.; Mallozzi, Robert S.; Pendleton, Geoffrey N.; Meegan, Charles A.

    2000-01-01

    The three gamma-ray burst (GRB) classes identified by statistical clustering analysis (Mukherjee et al. 1998) are examined using the pattern recognition algorithm C4.5 (Quinlan 1986). Although the statistical existence of Class 3 (intermediate duration, intermediate fluence, soft) is supported, the properties of this class do not need to arise from a distinct source population. Class 3 properties can easily be produced from Class 1 (long, high fluence, intermediate hardness) by a combination of measurement error, hardness/intensity correlation, and a newly-identified BATSE bias (the fluence duration bias). Class 2 (short, low fluence, hard) does not appear to be related to Class 1.

  11. Burst-Mode Asynchronous Controllers on FPGA

    Directory of Open Access Journals (Sweden)

    Duarte L. Oliveira

    2008-01-01

    Full Text Available FPGAs have been mainly used to design synchronous circuits. Asynchronous design on FPGAs is difficult because the resulting circuit may suffer from hazard problems. We propose a method that implements a popular class of asynchronous circuits, known as burst mode, on FPGAs based on look-up table architectures. We present two conditions that, if satisfied, guarantee essential hazard-free implementation on any LUT-based FPGA. By doing that, besides all the intrinsic advantages of asynchronous over synchronous circuits, they also take advantage of the shorter design time and lower cost associated with FPGA designs.

  12. Bursting frequency prediction in turbulent boundary layers

    Energy Technology Data Exchange (ETDEWEB)

    LIOU,WILLIAM W.; FANG,YICHUNG

    2000-02-01

    The frequencies of the bursting events associated with the streamwise coherent structures of spatially developing incompressible turbulent boundary layers were predicted using global numerical solution of the Orr-Sommerfeld and the vertical vorticity equations of hydrodynamic stability problems. The structures were modeled as wavelike disturbances associated with the turbulent mean flow. The global method developed here involves the use of second and fourth order accurate finite difference formula for the differential equations as well as the boundary conditions. An automated prediction tool, BURFIT, was developed. The predicted resonance frequencies were found to agree very well with previous results using a local shooting technique and measured data.

  13. Spectral Lag Evolution among -Ray Burst Pulses

    Indian Academy of Sciences (India)

    Lan-Wei Jia; Yun-Feng Liang; En-Wei Liang

    2014-09-01

    We analyse the spectral lag evolution of -ray burst (GRB) pulses with observations by CGRO/BATSE. No universal spectral lag evolution feature and pulse luminosity-lag relation within a GRB is observed.Our results suggest that the spectral lag would be due to radiation physics and dynamics of a given emission episode, possibly due to the longer lasting emission in a lower energy band, and the spectral lag may not be an intrinsic parameter to discriminate the long and short GRBs.

  14. Gamma Ray Bursts in the HAWC Era

    CERN Document Server

    Mészáros, Peter; Murase, Kohta; Fox, Derek; Gao, He; Senno, Nicholas

    2015-01-01

    Gamma-Ray Bursts are the most energetic explosions in the Universe, and are among the most promising for detecting multiple non-electromagnetic signals, including cosmic rays, high energy neutrinos and gravitational waves. The multi-GeV to TeV gamma-ray range of GRB could have significant contributions from hadronic interactions, mixed with more conventional leptonic contributions. This energy range is important for probing the source physics, including overall energetics, the shock parameters and the Lorentz factor. We discuss some of the latest observational and theoretical developments in the field.

  15. The Nature of Gamma Ray Burst Supernovae

    OpenAIRE

    Cano, Zach

    2012-01-01

    Gamma Ray Bursts (GRBs) and Supernovae (SNe) are among the brightest and most energetic physical processes in the universe. It is known that core-collapse SNe arise from the gravitational collapse and subsequent explosion of massive stars (the progen- itors of nearby core-collapse SNe have been imaged and unambiguously identified). It is also believed that the progenitors of long-duration GRBs (L-GRBs) are massive stars, mainly due to the occurrence and detection of very energetic core-collap...

  16. Nucleosynthetic Yields from Gamma-Ray Bursts

    CERN Document Server

    Rockefeller, Gabriel; Young, Patrick; Bennett, Michael; Diehl, Steven; Herwig, Falk; Hirschi, Raphael; Hungerford, Aimee; Pignatari, Marco; Magkotsios, Georgios; Timmes, Francis X

    2008-01-01

    The "collapsar" engine for gamma-ray bursts invokes as its energy source the failure of a normal supernova and the formation of a black hole. Here we present the results of the first three-dimensional simulation of the collapse of a massive star down to a black hole, including the subsequent accretion and explosion. The explosion differs significantly from the axisymmetric scenario obtained in two-dimensional simulations; this has important consequences for the nucleosynthetic yields. We compare the nucleosynthetic yields to those of hypernovae. Calculating yields from three-dimensional explosions requires new strategies in post-process nucleosynthesis; we discuss NuGrid's plan for three-dimensional yields.

  17. Broad-band solar bursts of the spike type

    Energy Technology Data Exchange (ETDEWEB)

    Bakunin, L.M.; Chernov, G.P.

    1985-10-01

    Observations of high-resolution dynamic spectra of solar broad-band spike bursts (BSB), consisting of the instantaneous brightening of the continuum in the entire spectrograph range of 175-235 MHz, are reported. In noise storms events of the BSB type are rarely encountered and have the form of individual bursts with an average duration of 0.1-0.2 sec or groups of such bursts connected with type III bursts at lower frequencies. Series of aperiodic BSB structures unconnected with type III bursts and observed together with one-second pulsations and fiber bursts, predominate in type IV bursts. In noise storms BSB bursts can be emitted by electrons accelerated instantaneously as a result of the reconnection of magnetic fields, both in a small source (about 10 to the 8th cm) with a broad velocity dispersion and in an extended source (about 5 x 10 to the 9th cm). Structures of the BSB type in type IV bursts may be the result of the scattering of Langmuir waves on whistlers in a large height range. 30 references.

  18. A behavioral role for feature detection by sensory bursts.

    Science.gov (United States)

    Marsat, Gary; Pollack, Gerald S

    2006-10-11

    Brief episodes of high-frequency firing of sensory neurons, or bursts, occur in many systems, including mammalian auditory and visual systems, and are believed to signal the occurrence of particularly important stimulus features, i.e., to function as feature detectors. However, the behavioral relevance of sensory bursts has not been established in any system. Here, we show that bursts in an identified auditory interneuron of crickets reliably signal salient stimulus features and reliably predict behavioral responses. Our results thus demonstrate the close link between sensory bursts and behavior.

  19. Percussion drilling of metals using bursts of nanosecond pulses.

    Science.gov (United States)

    Hendow, Sami T; Romero, Rosa; Shakir, Sami A; Guerreiro, Paulo T

    2011-05-23

    The effect of ns bursting on percussion drilling of metal is investigated experimentally and analytically, and compared with the efficiency and quality of drilling using single ns pulses. Key advantages are demonstrated, correlating well with the results from a thermal theoretical model. The 1064 nm bursts contain up to 14 pulses of various pulse widths and spacing, and at frequencies of tens of MHz within the burst. The individual pulses have pulse widths of 10 to 200 ns, and up to 12 kW peak power. Burst repetition frequency is single shot to 500 kHz.

  20. Observations of cosmic gamma ray bursts with WATCH on EURECA

    DEFF Research Database (Denmark)

    Brandt, Søren; Lund, N.; Castro-Tirado, A. J.

    1995-01-01

    19 Cosmic Gamma-Ray Bursts were detected by the WATCH wide field X-ray monitor during the 11 months flight of EURECA. The identification of the bursts were complicated by a high frequency of background of events caused by high energy cosmic ray interactions in the detector and by low energy......, trapped particle streams. These background events may simulate the count rate increases characteristic of cosmic gamma bursts. For 12 of the detected events, their true cosmic nature have been confirmed through consistent localizations of the burst sources based on several independent WATCH data sets...

  1. Statistical Properties of SGR 1806-20 Bursts.

    Science.gov (United States)

    Göğüş; Woods; Kouveliotou; van Paradijs J; Briggs; Duncan; Thompson

    2000-04-01

    We present statistics of SGR 1806-20 bursts, combining 290 events detected with the Rossi X-Ray Timing Explorer/Proportional Counter Array, 111 events detected with the Burst and Transient Source Experiment, and 134 events detected with the International Cometary Explorer. We find that the fluence distribution of bursts observed with each instrument are well described by power laws with indices 1.43, 1.76, and 1.67, respectively. The distribution of time intervals between successive bursts from SGR 1806-20 is described by a lognormal function with a peak at 103 s. There is no correlation between the burst intensity and either the waiting times until the next burst or the time elapsed since the previous burst. In all these statistical properties, SGR 1806-20 bursts resemble a self-organized critical system, similar to earthquakes and solar flares. Our results thus support the hypothesis that the energy source for soft gamma repeater bursts is crustquakes due to the evolving, strong magnetic field of the neutron star, rather than any accretion or nuclear power.

  2. The long and the short of gamma-ray bursts

    CERN Document Server

    Katz, J I

    1995-01-01

    We report evidence from the 3B Catalogue that long (T_{90} > 10 s) and short (T_{90} 1 MeV. This implies different spatial origin and physical processes for long and short bursts. Long bursts may be explained by accretion-induced collapse. Short bursts require another mechanism, for which we suggest neutron star collisions. These are capable of producing neutrino bursts as short as a few ms, consistent with the shortest observed time scales in GRB. We briefly investigate the parameters of clusters in which neutron star collisons may occur, and discuss the nuclear evolution of expelled and accelerated matter.

  3. Can we identify lensed gamma-ray bursts?

    Science.gov (United States)

    Nowak, Michael A.; Grossman, Scott A.

    1994-01-01

    A gravitationally lensed gamma-ray burst (GRB) would appear as multiple bursts with identical light curves, separated in time and differing only by the scaling of their amplitudes. In reality, the detected bursts will be noisy, and therefore they may be difficult to identify as lensed images. Furthermore, faint, intrinsically similar, yet distinct light curves may be falsely identified as lensing events. In this paper we develop two statistical tests to distinguish noisy burst light curves. We use Fourier analysis techniques to analyze the signals for both intrinsic variability and variability due to noise. We are able to determine the noise level, and we compare the bursts only at frequency channels that are signal dominated. Utilizing these methods, we are able to make quantitative statements about whether two bursts are distinct. We apply these statistics to scaled versions of two subbursts of GRB 910503 -- subbursts previously investigated by Wambsganss using a different statistical test. We find that our methods are able to distinguish these bursts at slightly smaller amplitudes than those at which Wambsganss's method succeeds. We then apply our techniques to 'candidate' lensing events taken from the Burst and Transient Source Experiment (BATSE) catalog, and we find that nearly all of them, except for the very shortest ones (durations approx. less than 3 sec), are distinguishable. We therefore expect that a majority of bursts will be distinguishable from one another.

  4. Ablation of steel using picosecond laser pulses in burst mode

    Science.gov (United States)

    Lickschat, Peter; Demba, Alexander; Weissmantel, Steffen

    2017-02-01

    Results obtained in picosecond laser processing of steel applying the burst mode are presented. Using the burst mode, pulse trains, i.e., bursts, consisting of a number of picosecond pulses with an inter-pulse delay of 12.5 ns and 10 ps pulse duration are applied for material processing. Small cavities with sizes in the range of the laser beam diameter made by single-burst ablation are compared to quadratic cavities of 0.5 × 0.5 mm² produced by multiburst ablation and simultaneous scanning of the laser beam across the steel sample surface. The ablated volume per pulse within the burst was calculated either from the ablated volume per burst or from the ablation depth of the quadratic cavities. With the second to fourth pulses in the bursts, a reduction of the ablated volume per pulse in comparison with the first pulse in the bursts (i.e., to the use of single pulses) was found for both single- and multiburst ablation, which is assumed to be due to plasma shielding. By contrast, the ablated volume per pulse within the bursts increases for the fifth to eighth pulses. Heat accumulation effect and the influence of the heated plasma can be assumed to be the reason for these higher ablation rates. SEM micrographs also show that there is a higher melt ejection out of the laser processed area. This is indicated by the formation of bulges about the ablated area.

  5. Statistical Properties of SGR 1806-20 Bursts

    Science.gov (United States)

    Gogus, Ersin; Woods, Peter M.; Kouveliotou, Chryssa; VanParadijs, Jan; Briggs, Michael S.; Duncan, Robert C.; Thompson, Christopher

    2000-01-01

    We present statistics of SGR 1806-20 bursts, combining 290 events detected with the Rossi X-Ray Timing Explorer/Proportional Counter Array, 111 events detected with the Burst and Transient Source Experiment, and 134 events detected with the International Cometary, Explorer. We find that the fluence distribution of bursts observed with each instrument are well described by power laws with indices 1.43, 1.76, and 1.67, respectively. The distribution of time intervals between successive bursts from SGR 1806-20 is described by a lognormal function with a peak at 103 s. There is no correlation between the burst intensity and either the waiting times until the next burst or the time elapsed since the previous burst. In all these statistical properties, SGR 1806-20 bursts resemble a self-organized critical system, similar to earthquakes and solar flares. Our results thus support the hypothesis that the energy source for soft gamma repeater bursts is crustquakes due to the evolving, strong magnetic field of the neutron star, rather than any accretion or nuclear power.

  6. A polarised fast radio burst at low Galactic latitude

    Science.gov (United States)

    Petroff, Emily; SUPERB Collaboration; HESS Collaboration; ANTARES Collaboration

    2017-01-01

    Fast radio bursts (FRBs) are a growing population of transients detected with radio telescopes which are thought to originate outside the Milky Way. Fewer than 20 sources exist in the literature and the majority of bursts have been found away from the plane of the Galaxy or where the Galactic contribution to the total electron column density is low. Here we report on the discovery of a new burst, FRB 150215, discovered with the Parkes radio telescope in real-time in February 2015. The burst was found to be 43±5% linearly polarised with an imprecisely determined rotation measure (RM) consistent with zero. The burst was followed-up with 9 telescopes to search for radio, optical, X-ray, γ-ray and neutrino emission from the location of the burst. No transient or variable emission was found to be associated with the burst and no repeat pulses have been observed in nine hours of Parkes observations. Radio images of the field were obtained following the FRB but would not have been sensitive enough to pick up a signal like the one emanating from WISE J071634.59-190039.2 following FRB150418 if it had been present. The sightline to the burst is close to the Galactic plane and the Galactic RM foreground may approach a null along this sightline, corresponding to a decreased total electron column density from the Milky Way. This might explain why this burst was detectable at low latitude whereas previous searches have been relatively unsuccessful.

  7. The GLAST burst monitor instrument response simulation system

    Science.gov (United States)

    Hoover, A. S.; Kippen, R. M.; Meegan, C. A.; Fishman, G. J.; Wilson, R. B.; Wilson-Hodge, C. A.; Kouveliotou, C.; Lichti, G. G.; von Kienlin, A.; Diehl, R.; Greiner, J.; Schoenfelder, V.; Steinle, H.; Preece, R. D.; Briggs, M. S.; Paciesas, W. S.; Bhat, P. N.; Connaughton, V.

    2005-07-01

    The GLAST Burst Monitor (GBM) is designed to provide wide field of view observations of gamma-ray bursts from 10keV to 25MeV. The GBM is composed of twelve NaI and two BGO detectors that are widely dispersed about the GLAST spacecraft. Reconstructing burst locations and energy spectra from these separated detectors requires detailed knowledge of the response to direct and scattered burst radiation. A simulation software package based on the GEANT4 Monte Carlo toolset is being developed to fulfill this requirement. We will discuss the architecture of our simulation system and evaluate the scientific capabilities of the GBM.

  8. A Limited Deflection Routing Algorithm Based on Burst Loss Threshold in OBS Networks

    Institute of Scientific and Technical Information of China (English)

    WANG Ru-yan; LONG Ke-ping; WU Wei; YANG Xiao-long; ZHU Wei-le

    2005-01-01

    The deflection routing protocol is an effective contention resolution in Optical Burst Switching network. However, it can worsen loss performance of non-deflected burst on the deflection route. To improve the burst loss performance, a limited deflection routing scheme based on burst loss threshold is proposed to prevent injudicious deflection routing. By using threshold check function, it restrainedly allows the deflected burst to preemptive network resource, consequently, improve the QoS performance of non-deflected burst. Simulation results show that the scheme can efficiently prevent deflected burst contending with non-deflected burst on deflection route, and effectively improve the burst loss performance of entire networks.

  9. The repeating Fast Radio Burst FRB 121102: Multi-wavelength observations and additional bursts

    CERN Document Server

    Scholz, P; Hessels, J W T; Chatterjee, S; Cordes, J M; Kaspi, V M; Wharton, R S; Bassa, C G; Bogdanov, S; Camilo, F; Crawford, F; Deneva, J; van Leeuwen, J; Lynch, R; Madsen, E C; McLaughlin, M A; Mickaliger, M; Parent, E; Patel, C; Ransom, S M; Seymour, A; Stairs, I H; Stappers, B W; Tendulkar, S P

    2016-01-01

    We report on radio and X-ray observations of the only known repeating Fast Radio Burst (FRB) source, FRB 121102. We have detected six additional radio bursts from this source: five with the Green Bank Telescope at 2 GHz, and one at 1.4 GHz at the Arecibo Observatory for a total of 17 bursts from this source. All have dispersion measures consistent with a single value ($\\sim559$ pc cm$^{-3}$) that is three times the predicted maximum Galactic value. The 2-GHz bursts have highly variable spectra like those at 1.4 GHz, indicating that the frequency structure seen across the individual 1.4 and 2-GHz bandpasses is part of a wideband process. X-ray observations of the FRB 121102 field with the Swift and Chandra observatories show at least one possible counterpart; however, the probability of chance superposition is high. A radio imaging observation of the field with the Jansky Very Large Array at 1.6 GHz yields a 5$\\sigma$ upper limit of 0.3 mJy on any point-source continuum emission. This upper limit, combined wit...

  10. The Second SWIFT Burst Alert Telescope (BAT) Gamma-Ray Burst Catalog

    Science.gov (United States)

    Sakamoto, T.; Barthelmy, S. D.; Baumgartner, W. H.; Cummings, J. R.; Fenimore, E. E.; Gehrels, N.; Krimm, H. A.; Markwardt, C. B.; Palmer, D. M.; Parsons, A. M.; Sato, G.; Stamatikos, M.; Tueller, J.; Ukwatta, T. N.; Zhang, B.

    2012-01-01

    We present the second Swift Burst Alert Telescope (BAT) catalog of gamma-ray bursts. (GRBs), which contains 476 bursts detected by the BAT between 2004 December 19 and 2009 December 21. This catalog (hereafter the BAT2 catalog) presents burst trigger time, location, 90% error radius, duration, fluence, peak flux, time-averaged spectral parameters and time-resolved spectral parameters measured by the BAT. In the correlation study of various observed parameters extracted from the BAT prompt emission data, we distinguish among long-duration GRBs (L-GRBs), short-duration GRBs (S-GRBs), and short-duration GRBs with extended emission (S-GRBs with E.E.) to investigate differences in the prompt emission properties. The fraction of L-GRBs, S-GRBs and S-GRBs with E.E. in the catalog are 89%, 8% and 2% respectively. We compare the BAT prompt emission properties with the BATSE, BeppoSAX and HETE-2 GRB samples.. We also correlate the observed prompt emission properties with the redshifts for the GRBs with known redshift. The BAT T(sub 90) and T(sub 50) durations peak at 70 s and 30 s, respectively. We confirm that the spectra of the BAT S-GRBs are generally harder than those of the L-GRBs.

  11. Xanthine oxidase in human skeletal muscle following eccentric exercise

    DEFF Research Database (Denmark)

    Hellsten, Ylva; Frandsen, Ulrik; Orthenblad, N.

    1997-01-01

    1. The present study tested the hypothesis that the level of xanthine oxidase is elevated in injured human skeletal muscle in association with inflammatory events. Seven male subjects performed five bouts of strenuous one-legged eccentric exercise. Muscle biopsies from both the exercised and the ......1. The present study tested the hypothesis that the level of xanthine oxidase is elevated in injured human skeletal muscle in association with inflammatory events. Seven male subjects performed five bouts of strenuous one-legged eccentric exercise. Muscle biopsies from both the exercised...... the increase in xanthine oxidase in the muscle there were no detectable changes in the levels of muscle malondialdehyde or in plasma antioxidant capacity up to 4 days post-exercise. 5. It is concluded that eccentric exercise leads to an increased level of xanthine oxidase in human muscle and that the increase...

  12. Aldehyde-induced xanthine oxidase activity in raw milk.

    Science.gov (United States)

    Steffensen, Charlotte L; Andersen, Henrik J; Nielsen, Jacob H

    2002-12-04

    In the present study, the aldehyde-induced pro-oxidative activity of xanthine oxidase was followed in an accelerated raw milk system using spin-trap electron spin resonance (ESR) spectroscopy. The aldehydes acetaldehyde, propanal, hexanal, trans-2-hexenal, trans-2-heptenal, trans-2-nonenal, and 3-methyl-2-butenal were all found to initiate radical reactions when added to milk. Formation of superoxide through aldehyde-induced xanthine oxidase activity is suggested as the initial reaction, as all tested aldehydes were shown to trigger superoxide formation in an ultrahigh temperature (UHT) milk model system with added xanthine oxidase. It was found that addition of aldehydes to milk initially increased the ascorbyl radical concentration with a subsequent decay due to ascorbate depletion, which renders the formation of superoxide in milk with added aldehyde. The present study shows for the first time potential acceleration of oxidative events in milk through aldehyde-induced xanthine oxidase activity.

  13. Activation of the neutrophil NADPH oxidase by Aspergillus fumigatus.

    Science.gov (United States)

    Boyle, Keith B; Stephens, Len R; Hawkins, Phillip T

    2012-12-01

    Upon infection of the respiratory system with the fungus Aspergillus fumigatus various leukoctytes, in particular neutrophils, are recruited to the lung to mount an immune response. Neutrophils respond by both phagocytosing conidia and mediating extracellular killing of germinated, invasive hyphae. Of paramount importance to an appropriate immune response is the neutrophil NADPH oxidase enzyme, which mediates the production of various reactive oxygen species (ROS). This is evidenced by the acute sensitivity of both oxidase-deficient humans and mice to invasive aspergillosis. Herein we briefly review the mechanisms and functions of oxidase activation and discuss our recent work identifying at least some of the important players in hyphal-induced oxidase activation and neutrophil function. Among these we define the phosphoinositide 3-kinase enzyme and the regulatory protein Vav to be of critical importance and allude to a kinase-independent role for Syk.

  14. Hydrogen peroxide generated by NADPH oxidase is involved in high blue-light-induced chloroplast avoidance movements in Arabidopsis

    Science.gov (United States)

    Wen, Feng; Xing, Da; Zhang, Lingrui

    2009-08-01

    One of the most important functions of blue light is to induce chloroplast movements by reducing the damage to photosynthetic machinery under excess light. Hydrogen peroxide (H2O2), generated by various environmental stimuli, can act as a signaling molecule that regulates a number of developmental processes and environmental responses. To investigate whether H2O2 is involved in high blue light-induced chloroplast avoidance movements, we use luminescence spectrometer to observe H2O2 generation with the assistance of the fluorescence probe dichlorofluorescin diacetate (H2DCF-DA). After treatment with high blue light, a large quantity of H2O2 indicated by the fluorescence intensity of DCF is produced in a dose-dependent manner in leaf strip of Arabidopsis. Enzymatic assay shows that the activity of NADPH oxidase, which is a major site for H2O2 generation, also rapidly increases in treated strips. Exogenously applied H2O2 can promote the high blue light-induced chloroplast movements. Moreover, high blue light-induced H2O2 generation can be abolished completely by addition of exogenous catalase (CAT), and partly by diphenylene iodonium (DPI) and dichlorophenyl dimethylurea (DCMU), which are an NADPH oxidase inhibitor and a blocker of electron transport chain. And subsequent chloroplast movements can be abolished by CAT and DPI, but not by DCMU. These results presented here suggested that high blue light can induce oxidative burst, and NADPH oxidase as a major producer for H2O2 is involved in blue light-induced chloroplast avoidance movements.

  15. Inventory control: cytochrome c oxidase assembly regulates mitochondrial translation.

    Science.gov (United States)

    Mick, David U; Fox, Thomas D; Rehling, Peter

    2011-01-01

    Mitochondria maintain genome and translation machinery to synthesize a small subset of subunits of the oxidative phosphorylation system. To build up functional enzymes, these organellar gene products must assemble with imported subunits that are encoded in the nucleus. New findings on the early steps of cytochrome c oxidase assembly reveal how the mitochondrial translation of its core component, cytochrome c oxidase subunit 1 (Cox1), is directly coupled to the assembly of this respiratory complex.

  16. Regulation of the NADPH Oxidase RBOHD During Plant Immunity

    OpenAIRE

    2015-01-01

    Pathogen recognition induces the production of reactive oxygen species (ROS) by NADPH oxidases in both plants and animals. ROS have direct antimicrobial properties, but also serve as signaling molecules to activate further immune outputs. However, ROS production has to be tightly controlled to avoid detrimental effects on host cells, but yet must be produced in the right amount, at the right place and at the right time upon pathogen perception. Plant NADPH oxidases belong to the respiratory b...

  17. $\\gamma$-Ray Bursts the Four Crises

    CERN Document Server

    Tavani, M

    1998-01-01

    We discuss some open problems concerning the origin and the emission mechanism of gamma-ray bursts (GRBs) in light of recent developments. If GRBs originate at extragalactic distances, we are facing four crises: (1) an energy crisis, models have to account for more than 10^{53} ergs of energy emitted in the gamma-ray energy band; (2) a spectral crisis, emission models have to account for the surprising `smoothness' of GRB broad-band spectra, with no indication of the predicted spectral `distorsions' caused by inverse Compton scattering in large radiation energy density media, and no evidence for beaming; (3) an afterglow crisis, relativistic shock models have to explain the complexity of the afterglow behavior, the longevity of optical transients detectable up to six months after the burst, the erratic behavior of the radio emission, and the lack of evidence for substantial beaming as indicated by recent searches for GRB afterglows in the X-ray band; (4) a population crisis, from data clearly indicating that ...

  18. The interplanetary gamma ray burst network

    Science.gov (United States)

    Cline, T.

    The Interplanetary Gamma-Ray Burst Network (IPN) is providing gamma-ray burst (GRB) alerts and localizations at the maximum rate anticipated before the launch of the Swift mission. The arc-minute source precision of the IPN is again permitting searches for GRB afterglows in the radio and optical regimes with delays of only hours up to 2 days. The successful addition of the Mars Odyssey mission has compensated for the loss of the asteroid mission NEAR, to reconstitute a fully long- baseline interplanetary network, with Ulysses at > 5 AU and Konus-Wind and HETE-2 near the Earth. In addition to making unassisted GRB localizations that enable a renewed supply of counterpart observations, the Mars/Ulysses/Wind IPN is confirming and reinforcing GRB source localizations with HETE-2. It has also confirmed and reinforced localizations with the BeppoSAX mission before the BeppoSAX termination in May and has detected and localized both SGRs and an unusual hard x-ray transient that is neither an SGR nor a GRB. This IPN is expected to operate until at least 2004.

  19. Gamma-ray bursts and collisionless shocks

    CERN Document Server

    Waxman, E

    2006-01-01

    Particle acceleration in collisionless shocks is believed to be responsible for the production of cosmic-rays over a wide range of energies, from few GeV to >10^{20} eV, as well as for the non-thermal emission of radiation from a wide variety of high energy astrophysical sources. A theory of collisionless shocks based on first principles does not, however, exist. Observations of gamma-ray burst (GRB) "afterglows" provide a unique opportunity for diagnosing the physics of relativistic collisionless shocks. Most GRBs are believed to be associated with explosions of massive stars, and their "afterglows," delayed low energy emission following the prompt burst of gamma-rays, are produced by relativistic collisionless shock waves driven by the explosion into the surrounding plasma. Some of the striking characteristics of these shocks include the generation of downstream magnetic fields with energy density exceeding that of the upstream field by ~8 orders of magnitude, the survival of this strong field at distances ...

  20. Gamma Ray Bursts Cook Book I: Formulation

    CERN Document Server

    Ziaeepour, Houri

    2008-01-01

    Since the suggestion of relativistic shocks as the origin of gamma-ray bursts (GRBs) in early 90's, the mathematical formulation of this process has stayed at phenomenological level. One of the reasons for the slow development of theoretical works in this domain has been the simple power-law behaviour of the afterglows hours or days after the prompt gamma-ray emission. Nowadays with the launch of the Swift satellite, gamma-ray bursts can be observed in multi-wavelength from a few tens of seconds after trigger onward. These observations have leaded to the discovery of features unexplainable by the simple formulation of the shocks and emission processes used up to now. But "devil is in details" and some of these features may be explained with a more detailed formulation of phenomena and without adhoc addition of new processes. Such a formulation is the goal of this work. We present a consistent formulation of the collision between two spherical relativistic shells. The model can be applied to both internal and ...

  1. Population III Gamma-Ray Bursts

    Science.gov (United States)

    Toma, K.; Sakamoto, T.; Mészáros, P.

    Population III stars are theoretically expected to be prominent around redshifts z ˜ 20, consisting of mainly very massive stars (VMSs) with M_* ∼ 100;M_⊙, but there is no direct observational evidence for these objects. They may produce collapsar gamma-ray bursts (GRBs), with jets driven by magnetohydrodynamic processes, whose total isotropic-equivalent energy could be as high as E_iso ∼ 1057;erg over a cosmological-rest-frame duration of t_d ∼ 104;s, depending on the progenitor mass. The detection of a burst with such a high total energy and a long duration would be a strong evidence for a VMS progenitor. We calculate the prompt emission and afterglow spectra of such Pop. III GRBs based on the standard models, and show that they will be detectable with the Swift BAT/XRT and Fermi LAT instruments. We also show that the late-time radio afterglows of Pop. III GRBs for typical parameters, despite the large distances, can be very bright: ≃ 140;mJy at 1;GHz, which may lead to a constraint on the Pop. III GRB rate from the current radio survey data, and ≃ 2.4;mJy at 70;MHz, which implies that Pop. III GRB radio afterglows could be interesting background source candidates for 21 cm absorption line detections.

  2. Gamma-Ray Bursts: Should cosmologists care?

    Science.gov (United States)

    Laros, J. G.

    1996-03-01

    Gamma-Ray Burst (GRB) locations are distributed isotropically on the sky, but the intensity distribution of the bursts seems clearly incompatible with spatial homogeneity. Of the scenarios that attempt to provide an explanation, there are two that enjoy current popularity: (1) GRBs are produced by high-velocity neutron stars that have formed an extended (˜100 kpc) spherical halo or “corona” around our galaxy. (2) The bursters are at cosmological distances, with redshifts near unity for the weaker events. The major evidence used to argue for or against each of these scenarios remains inconclusive. Assuming, not unreasonably, that the cosmological scenario is correct, one can discuss the advantages and disadvantages of studying GRBs as opposed to other objects at moderate redshift. We find that the advantages of GRBs-high intensity, penetrating radiation, rapid variability, and no expected source evolution-are offset by observational difficulties pertaining to the extraction of cosmological information from GRB data. If the cosmological scenario proves to be correct and if the observational difficulties are overcome, then cosmologists certainly should care.

  3. Photospheric Emission in Gamma-Ray Bursts

    CERN Document Server

    Pe'er, Asaf

    2016-01-01

    A major breakthrough in our understanding of gamma-ray bursts (GRB) prompt emission physics occurred in the last few years, with the realization that a thermal component accompanies the over-all non-thermal prompt spectra. This thermal part is important by itself, as it provides direct probe of the physics in the innermost outflow regions. It further has an indirect importance, as a source of seed photons for inverse-Compton scattering, thereby it contributes to the non-thermal part as well. In this short review, we highlight some key recent developments. Observationally, although so far it was clearly identified only in a minority of bursts, there are indirect evidence that thermal component exists in a very large fraction of GRBs, possibly close to 100%. Theoretically, the existence of thermal component have a large number of implications as a probe of underlying GRB physics. Some surprising implications include its use as a probe of the jet dynamics, geometry and magnetization.

  4. Short-Duration Gamma-Ray Bursts

    CERN Document Server

    Berger, Edo

    2013-01-01

    Gamma-ray bursts (GRBs) display a bimodal duration distribution, with a separation between the short- and long-duration bursts at about 2 sec. The progenitors of long GRBs have been identified as massive stars based on their association with Type Ic core-collapse supernovae, their exclusive location in star-forming galaxies, and their strong correlation with bright ultraviolet regions within their host galaxies. Short GRBs have long been suspected on theoretical grounds to arise from compact object binary mergers (NS-NS or NS-BH). The discovery of short GRB afterglows in 2005, provided the first insight into their energy scale and environments, established a cosmological origin, a mix of host galaxy types, and an absence of associated supernovae. In this review I summarize nearly a decade of short GRB afterglow and host galaxy observations, and use this information to shed light on the nature and properties of their progenitors, the energy scale and collimation of the relativistic outflow, and the properties ...

  5. Swift observations of gamma-ray bursts.

    Science.gov (United States)

    Gehrels, Neil

    2007-05-15

    Since its launch on 20 November 2004, the Swift mission has been detecting approximately 100 gamma-ray bursts (GRBs) each year, and immediately (within approx. 90s) starting simultaneous X-ray and UV/optical observations of the afterglow. It has already collected an impressive database, including prompt emission to higher sensitivities than BATSE, uniform monitoring of afterglows and a rapid follow-up by other observatories notified through the GCN. Advances in our understanding of short GRBs have been spectacular. The detection of X-ray afterglows has led to accurate localizations and the conclusion that short GRBs can occur in non-star-forming galaxies or regions, whereas long GRBs are strongly concentrated within the star-forming regions. This is consistent with the NS merger model. Swift has greatly increased the redshift range of GRB detection. The highest redshift GRBs, at z approximately 5-6, are approaching the era of reionization. Ground-based deep optical spectroscopy of high redshift bursts is giving metallicity measurements and other information on the source environment to a much greater distance than other techniques. The localization of GRB 060218 to a nearby galaxy, and the association with SN 2006aj, added a valuable member to the class of GRBs with detected supernova.

  6. IDENTIFICATION OF HUMAN MURR1, THE HOMOLOGUE OF MOUSE IMPRINTED Murr1 GENE

    Institute of Scientific and Technical Information of China (English)

    Zhang Zhongming; Wang Youdong; Hitomi Yatsuki; Keiichiro Joh; Tsuyoshi Iwasaka; Tsunehiro Mukai

    2006-01-01

    Objective To identify the mRNA sequence, genetic construction, imprinting status, and expression profile of human MURR1 gene, the homologue of mouse imprinted Murr1 gene. Methods The MURR1 mRNA sequence was identified by colony hybridization screening of human cDNA library and the 5'-RACE analyses; Absence of U2AF1-RS1 gene within MURR1 was confirmed by Southern Blotting; Expression profile of MURR1 was examined by Northern Blotting; The imprinting status of MURR1 were revealed by SNP investigation and RT-PCR followed by sequencings and RFLP analyses. Results The full-length mRNA sequence of MURR1 spans 711 bp, transcribed from 3 exons, encodes predicted MURR1 protein of 190 amino acids. The gene was expressed in all the 12 kinds of human adult tissues and 6 kinds of fetal tissues. It showed biallelic expression in all 32 investigated samples including 6 kinds of human fetal tissues and 8 adult brains. Unlike mouse imprinted U2af1-rs1 gene existing in the intron of Murr1, the human U2AF1-RS1 gene was not located in the MURR1 locus. Conclusion Human MURR1 gene is not imprinted and the non-imprinting is possible due to the absence of human homologue of mouse U2af1-rs1 within MURR1 locus.

  7. Characterization of a Plasmodium falciparum macrophage-migration inhibitory factor homologue.

    Science.gov (United States)

    Cordery, Damien V; Kishore, Uday; Kyes, Sue; Shafi, Mohammed J; Watkins, Katherine R; Williams, Thomas N; Marsh, Kevin; Urban, Britta C

    2007-03-15

    Macrophage-migration inhibitory factor (MIF), one of the first cytokines described, has a broad range of proinflammatory properties. The genome sequencing project of Plasmodium falciparum identified a parasite homologue of MIF. The protein is expressed during the asexual blood stages of the parasite life cycle that cause malarial disease. The identification of a parasite homologue of MIF raised the question of whether it affects monocyte function in a manner similar to its human counterpart. Recombinant P. falciparum MIF (PfMIF) was generated and used in vitro to assess its influence on monocyte function. Antibodies generated against PfMIF were used to determine the expression profile and localization of the protein in blood-stage parasites. Antibody responses to PfMIF were determined in Kenyan children with acute malaria and in control subjects. PfMIF protein was expressed in asexual blood-stage parasites, localized to the Maurer's cleft. In vitro treatment of monocytes with PfMIF inhibited random migration and reduced the surface expression of Toll-like receptor (TLR) 2, TLR4, and CD86. These results indicate that PfMIF is released during blood-stage malaria and potentially modulates the function of monocytes during acute P. falciparum infection.

  8. Pescadillo homologue 1 and Peter Pan function during Xenopus laevis pronephros development.

    Science.gov (United States)

    Tecza, Aleksandra; Bugner, Verena; Kühl, Michael; Kühl, Susanne J

    2011-10-01

    pes1 (pescadillo homologue 1) and ppan (Peter Pan) are multifunctional proteins involved in ribosome biogenesis, cell proliferation, apoptosis, cell migration and regulation of gene expression. Both proteins are required for early neural development in Xenopus laevis, as previously demonstrated. We show that the expression of both genes in the developing pronephros depends on wnt4 and fzd3 (frizzled homologue 3) function. Loss of pes1 or ppan by MO (morpholino oligonucleotide)-based knockdown approaches resulted in strong malformations during pronephric tubule formation. Defects were already notable during specification of pronephric progenitor cells, as shown by lhx1 expression. Moreover, we demonstrated that Xenopus pes1 and ppan interact physically and functionally and that pes1 and ppan can cross-rescue the loss of function phenotype of one another. Interference with rRNA synthesis, however, did not result in a similar early pronephros phenotype. These results demonstrate that pes1 and ppan are required for Xenopus pronephros development and indicate that their function in the pronephros is independent of their role in ribosome biosynthesis.

  9. Protease inhibitor homologues from mamba venoms: facilitation of acetylcholine release and interactions with prejunctional blocking toxins.

    Science.gov (United States)

    Harvey, A L; Karlsson, E

    1982-09-01

    1 Five polypeptides, which were isolated from elapid snake venoms and which are structurally related to protease inhibitors, were tested for action on isolated biventer cervicis nerve-muscle preparations of the chick. 2 Dendrotoxin from the Eastern green mamba (Dendroaspis angusticeps) and toxins K and I from the black mamba (Dendroaspis polylepis polylepis) increased to indirect stimulation without affecting responses to exogenous acetylcholine, carbachol of KCl. 3 The two other protease inhibitor homologues, HHV-II from Ringhals cobra (Hemachatus haemachatus) and NNV-II from Cape cobra (Naja nivea) did not increase responses to nerve stimulation. Trypsin inhibitor from bovine pancreas also had no facilitatory effects on neuromuscular transmission. 4 The facilitatory toxins from mamba venoms interacted with the prejunctional blocking toxins, beta-bungarotoxin, crotoxin and notexin, but not with taipoxin. The blocking effects of beta-bungarotoxin were reduced by pretreatment with the mamba toxins, whereas the blocking actions of crotoxin and notexin were enhanced. 5 The results indicate that protease inhibitor homologues from mamba venoms form a new class of neurotoxin, which acts to increase the release of acetylcholine in response to motor nerve stimulation. 6 From the interaction studies it is concluded that the facilitatory toxins bind to motor nerve terminals at sites related to those occupied by the prejunctional blocking toxins. However, differences in interactions with individual toxins suggest that there must be several related binding sites on the nerve terminals.

  10. Cloning of rat sp56, the homologue of mouse sperm ZP3 receptor-sp56

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    Mouse sp56 is considered as one of the candidates for mouse zona pellucida 3 (mZP3) receptor. Up to date, its homologue has only been cloned from guinea pig, namely AM67. Based on the cDNA sequence of mouse sp56, we designed a pair of primer to amplify its homologue from rat testis cDNA. Using RT-PCR,two fragments of 743 bp and 938 bp were amplified. The PCR products show very high homology to mouse sp56. However, the 743 bp product completely lacks one of the seven Sushi domains of mouse sp56. Using the 743 bp product as the probe to detect the expression profile of sp56 in rat tissues, Northern blot shows that a ~2.0 kb mRNA expresses specifically in testis. Employed the RACE method, two full cDNA sequences of rat sp56 were obtained. A Mr ~42 KD band was detected in denatured and non-reducing protein sample of rat testis and sperm with anti-mouse sp56 monoclonal antibody by Western blot method. Rat sp56was localized on rat sperm head by the indirect immunofiuorescence method. Rat sp56 immunoreactivitywas detected from the early pachytene spermatocytes and throughout the spermatogenesis. Its cloning willfurther our understanding of the mechanism of the sperm-egg recognition and binding.

  11. CRITICAL HYDROLOGIC CONDITIONS FOR OVERFLOW BURST OF MORAINE LAKE

    Institute of Scientific and Technical Information of China (English)

    JIANG Zhong-xin; CUI Peng; JIANG Liang-wei

    2004-01-01

    Floodwater and debris flow caused by glacial lake burst is an important land process and a serious mountain disaster in glacial area of Xizang (Tibet) Autonomous Region, and the overflow burst is mainly caused by glacial landslide falling into moraine lake. On the premise that moraine lake is full, instantaneous burst in part of the lake bank happens, as flow velocity at burst mouth caused by overflow head is higher than threshold flow velocity of glacial till. Under some supposes, d90 and d10 of the glacial till in the bank were used as the threshold sizes of coarse and fine grains respectively. Thus, the formula of calculating threshold flow velocity of uniform sand was simplified,and threshold flow velocity of glacial till was calculated with the formula. Then, with synthesis formula calculating flow velocity of instantaneous part burst, flow velocity at overflow burst mouth was calculated, and calculation formula of critical height (H0) of overflow head was derived. Overflow head was caused by volume and surge of glacial landslide falling into moraine lake, calculation formulas of ascendant height (H1) of lake water surface and surge height (H2) on burst mouth caused by glacial landslide falling into moraine lake were derived. To sum up, critical hydrologic conditions of moraine lake burst with overflow form are: the burst is inevitable as H1 >H0; the burst is possible as H1 <H0 and (H1+H2) >H0; the burst is impossible as (H1+H2) <H0. In the factors influencing the burst critical conditions, it is advantageous for the burst that scale of the lake is 105n2 range; terminal glacial till is more fine and is even more uniform; the width of overflow mouth is even smaller than the length of the bank; the landslide haslarge scale and steep slip surface; and glacial end is close to the lake. With burst of Guangxiecuo Lake in Midui Valley of the Polongzanghu River in Xizang as an example, the burst critical conditions were tested.

  12. Direct regulation of the NADPH oxidase RBOHD by the PRR-associated kinase BIK1 during plant immunity.

    Science.gov (United States)

    Kadota, Yasuhiro; Sklenar, Jan; Derbyshire, Paul; Stransfeld, Lena; Asai, Shuta; Ntoukakis, Vardis; Jones, Jonathan Dg; Shirasu, Ken; Menke, Frank; Jones, Alexandra; Zipfel, Cyril

    2014-04-10

    The rapid production of reactive oxygen species (ROS) burst is a conserved signaling output in immunity across kingdoms. In plants, perception of pathogen-associated molecular patterns (PAMPs) by surface-localized pattern recognition receptors (PRRs) activates the NADPH oxidase RBOHD by hitherto unknown mechanisms. Here, we show that RBOHD exists in complex with the receptor kinases EFR and FLS2, which are the PRRs for bacterial EF-Tu and flagellin, respectively. The plasma-membrane-associated kinase BIK1, which is a direct substrate of the PRR complex, directly interacts with and phosphorylates RBOHD upon PAMP perception. BIK1 phosphorylates different residues than calcium-dependent protein kinases, and both PAMP-induced BIK1 activation and BIK1-mediated phosphorylation of RBOHD are calcium independent. Importantly, phosphorylation of these residues is critical for the PAMP-induced ROS burst and antibacterial immunity. Our study reveals a rapid regulatory mechanism of a plant RBOH, which occurs in parallel with and is essential for its paradigmatic calcium-based regulation.

  13. Leflunomide, a Reversible Monoamine Oxidase Inhibitor.

    Science.gov (United States)

    Petzer, Jacobus P; Petzer, Anél

    2016-01-01

    A screening study aimed at identifying inhibitors of the enzyme, monoamine oxidase (MAO), among clinically used drugs have indicated that the antirheumatic drug, leflunomide, is an inhibitor of both MAO isoforms. Leflunomide inhibits human MAO-A and MAO-B and exhibits IC50 values of 19.1 μM and 13.7 μM, respectively. The corresponding Ki values are 17.7 μM (MAO-A) and 10.1 μM (MAO-B). Dialyses of mixtures of the MAO enzymes and leflunomide show that inhibition of the MAOs by leflunomide is reversible. The principal metabolite of leflunomide, teriflunomide (A77 1726), in contrast is not an MAO inhibitor. This study concludes that, although leflunomide is only moderately potent as an MAO inhibitor, isoxazole derivatives may represent a general class of MAO inhibitors and this heterocycle may find application in MAO inhibitor design. In this respect, MAO inhibitors are used in the clinic for the treatment of depressive illness and Parkinson's disease, and are under investigation as therapy for certain types of cancer, Alzheimer's disease and age-related impairment of cardiac function.

  14. MONOAMINE OXIDASE: RADIOTRACER DEVELOPMENT AND HUMAN STUDIES.

    Energy Technology Data Exchange (ETDEWEB)

    FOWLER,J.S.; LOGAN,J.; VOLKOW,N.D.; WANG,G.J.; MACGREGOR,R.R.; DING,Y.S.

    2000-09-28

    PET is uniquely capable of providing information on biochemical transformations in the living human body. Although most of the studies of monoamine oxidase (MAO) have focused on measurements in the brain, the role of peripheral MAO as a phase 1 enzyme for the metabolism of drugs and xenobiotics is gaining attention (Strolin Benedetti and Tipton, 1998; Castagnoli et al., 1997.). MAO is well suited for this role because its concentration in organs such as kidneys, liver and digestive organs is high sometimes exceeding that in the brain. Knowledge of the distribution of the MAO subtypes within different organs and different cells is important in determining which substrates (and which drugs and xenobiotics) have access to which MAO subtypes. The highly variable subtype distribution with different species makes human studies even more important. In addition, the deleterious side effects of combining MAO inhibitors with other drugs and with foodstuffs makes it important to know the MAO inhibitory potency of different drugs both in the brain and in peripheral organs (Ulus et al., 2000). Clearly PET can play a role in answering these questions, in drug research and development and in discovering some of the factors which contribute to the highly variable MAO levels in different individuals.

  15. Origin and evolution of lysyl oxidases.

    Science.gov (United States)

    Grau-Bové, Xavier; Ruiz-Trillo, Iñaki; Rodriguez-Pascual, Fernando

    2015-05-29

    Lysyl oxidases (LOX) are copper-dependent enzymes that oxidize primary amine substrates to reactive aldehydes. The best-studied role of LOX enzymes is the remodeling of the extracellular matrix (ECM) in animals by cross-linking collagens and elastin, although intracellular functions have been reported as well. Five different LOX enzymes have been identified in mammals, LOX and LOX-like (LOXL) 1 to 4, showing a highly conserved catalytic carboxy terminal domain and more divergence in the rest of the sequence. Here we have surveyed a wide selection of genomes in order to infer the evolutionary history of LOX. We identified LOX proteins not only in animals, but also in many other eukaryotes, as well as in bacteria and archaea - which reveals a pre-metazoan origin for this gene family. LOX genes expanded during metazoan evolution resulting in two superfamilies, LOXL2/L3/L4 and LOX/L1/L5. Considering the current knowledge on the function of mammalian LOX isoforms in ECM remodeling, we propose that LOXL2/L3/L4 members might have preferentially been involved in making cross-linked collagen IV-based basement membrane, whereas the diversification of LOX/L1/L5 forms contributed to chordate/vertebrate-specific ECM innovations, such as elastin and fibronectin. Our work provides a novel view on the evolution of this family of enzymes.

  16. Modular assembly of yeast cytochrome oxidase.

    Science.gov (United States)

    McStay, Gavin P; Su, Chen Hsien; Tzagoloff, Alexander

    2013-02-01

    Previous studies of yeast cytochrome oxidase (COX) biogenesis identified Cox1p, one of the three mitochondrially encoded core subunits, in two high-molecular weight complexes combined with regulatory/assembly factors essential for expression of this subunit. In the present study we use pulse-chase labeling experiments in conjunction with isolated mitochondria to identify new Cox1p intermediates and place them in an ordered pathway. Our results indicate that before its assimilation into COX, Cox1p transitions through five intermediates that are differentiated by their compositions of accessory factors and of two of the eight imported subunits. We propose a model of COX biogenesis in which Cox1p and the two other mitochondrial gene products, Cox2p and Cox3p, constitute independent assembly modules, each with its own complement of subunits. Unlike their bacterial counterparts, which are composed only of the individual core subunits, the final sequence in which the mitochondrial modules associate to form the holoenzyme may have been conserved during evolution.

  17. Study of Drug Metabolism by Xanthine Oxidase

    Directory of Open Access Journals (Sweden)

    Lizhou Sun

    2012-04-01

    Full Text Available In this work, we report the studies of drug metabolism by xanthine oxidase (XOD with electrochemical techniques. Firstly, a pair of stable, well-defined and quasi-reversible oxidation/reduction peaks is obtained with the formal potential at −413.1 mV (vs. SCE after embedding XOD in salmon sperm DNA membrane on the surface of pyrolytic graphite electrode. Then, a new steady peak can be observed at −730 mV (vs. SCE upon the addition of 6-mercaptopurine (6-MP to the electrochemical system, indicating the metabolism of 6-MP by XOD. Furthermore, the chronoamperometric response shows that the current of the catalytic peak located at −730 mV increases with addition of 6-MP in a concentration-dependent manner, and the increase of the chronoamperometric current can be inhibited by an XOD inhibitor, quercetin. Therefore, our results prove that XOD/DNA modified electrode can be efficiently used to study the metabolism of 6-MP, which may provide a convenient approach for in vitro studies on enzyme-catalyzed drug metabolism.

  18. Monoamine oxidase inhibitory activities of heterocyclic chalcones.

    Science.gov (United States)

    Minders, Corné; Petzer, Jacobus P; Petzer, Anél; Lourens, Anna C U

    2015-11-15

    Studies have shown that natural and synthetic chalcones (1,3-diphenyl-2-propen-1-ones) possess monoamine oxidase (MAO) inhibition activities. Of particular importance to the present study is a report that a series of furanochalcones acts as MAO-B selective inhibitors. Since the effect of heterocyclic substitution, other than furan (and more recently thiophene, piperidine and quinoline) on the MAO inhibitory properties of the chalcone scaffold remains unexplored, the aim of this study was to synthesise and evaluate further heterocyclic chalcone analogues as inhibitors of the human MAOs. For this purpose, heterocyclic chalcone analogues that incorporate pyrrole, 5-methylthiophene, 5-chlorothiophene and 6-methoxypyridine substitution were examined. Seven of the nine synthesised compounds exhibited IC50 values chalcones are reversible and competitive MAO inhibitors. 4h, however, may exhibit tight-binding to MAO-B, a property linked to its thiophene moiety. We conclude that high potency chalcones such as 4h represent suitable leads for the development of MAO-B inhibitors for the treatment of Parkinson's disease and possibly other neurodegenerative disorders.

  19. The Calcineurin B-Like Calcium Sensors CBL1 and CBL9 Together with Their Interacting Protein Kinase CIPK26 Regulate the Arabidopsis NADPH Oxidase RBOHF

    Institute of Scientific and Technical Information of China (English)

    Maria Magdalena Drerup; Kathrin Schlücking; Kenji Hashimoto; Prabha Manishankar; Leonie Steinhorst; Kazuyuki Kuchitsu; J(o)rg Kudla

    2013-01-01

    Stimulus-specific accumulation of second messengers like reactive oxygen species (ROS) and Ca2+ are central to many signaling and regulation processes in plants.However,mechanisms that govern the reciprocal interrelation of Ca2+ and ROS signaling are only beginning to emerge.NADPH oxidases of the respiratory burst oxidase homolog (RBOH) family are critical components contributing to the generation of ROS while Calcineurin B-like (CBL) Ca2+ sensor proteins together with their interacting kinases (CIPKs) have been shown to function in many Ca2+-signaling processes.In this study,we identify direct functional interactions between both signaling systems.We report that the CBL-interacting protein kinase ClPK26 specifically interacts with the N-terminal domain of RBOHF in yeast two-hybrid analyses and with the full-length RBOHF protein in plant cells.In addition,CIPK26 phosphorylates RBOHF in vitro and co-expression of either CBL1 or CBL9 with CIPK26 strongly enhances ROS production by RBOHF in HEK293T cells.Together,these findings identify a direct interconnection between CBL-ClPK-mediated Ca2+ signaling and ROS signaling in plants and provide evidence for a synergistic activation of the NADPH oxidase RBOHF by direct Ca2+-binding to its EF-hands and Ca2+-induced phosphorylation by CBL1/9-ClPK26 complexes.

  20. The Most Remote Gamma-Ray Burst

    Science.gov (United States)

    2000-10-01

    ESO Telescopes Observe "Lightning" in the Young Universe Summary Observations with telescopes at the ESO La Silla and Paranal observatories (Chile) have enabled an international team of astronomers [1] to measure the distance of a "gamma-ray burst", an extremely violent, cosmic explosion of still unknown physical origin. It turns out to be the most remote gamma-ray burst ever observed . The exceedingly powerful flash of light from this event was emitted when the Universe was very young, less than about 1,500 million years old, or only 10% of its present age. Travelling with the speed of light (300,000 km/sec) during 11,000 million years or more, the signal finally reached the Earth on January 31, 2000. The brightness of the exploding object was enormous, at least 1,000,000,000,000 times that of our Sun, or thousands of times that of the explosion of a single, heavy star (a "supernova"). The ESO Very Large Telescope (VLT) was also involved in trail-blazing observations of another gamma-ray burst in May 1999, cf. ESO PR 08/99. PR Photo 28a/00 : Sky field near GRB 000131 . PR Photo 28b/00 : The fading optical counterpart of GRB 000131 . PR Photo 28c/00 : VLT spectrum of GRB 000131 . What are Gamma-Ray Bursts? One of the currently most active fields of astrophysics is the study of the mysterious events known as "gamma-ray bursts" . They were first detected in the late 1960's by instruments on orbiting satellites. These short flashes of energetic gamma-rays last from less than a second to several minutes. Despite much effort, it is only within the last few years that it has become possible to locate the sites of some of these events (e.g. with the Beppo-Sax satellite ). Since the beginning of 1997, astronomers have identified about twenty optical sources in the sky that are associated with gamma-ray bursts. They have been found to be situated at extremely large (i.e., "cosmological") distances. This implies that the energy release during a gamma-ray burst within a few

  1. Heavy Atom Effect on the First Hyperpolarizabilities of Squaric Acid Homologues Studied by Ab Initio and DFT Methods

    Institute of Scientific and Technical Information of China (English)

    FU Wei-Wei; ZHOU Li-Xin; WAN Hua-Ping

    2004-01-01

    We have calculated the first hyperpolarizabilities of four squaric acid homologue molecules: 3,4-dithiohydroxy-3-cyclobutene-1,2-dione (OSSQ), 3,4-dithiohydroxy-3-cyclobutene-1, 2-dithione (SSSQ), 3,4-dithiohydroxy-3-cyclobutene-1,2-diselenone (SeSSQ) and 3,4-dithiohydroxy- 3-cyclobutene-1,2-ditellurone (TeSSQ). The correlation effect was investigated at the second-order Mφller-Plesset (MP2) perturbation and density functional theory (DFT) levels. The frequency disper- sion and solvent effect were considered to compare the theoretical values with the experimental observations. Based on all of these studies, it is worthy to point out that the heavy atom effect dis- covered for furan homologues is an influence on the first hyperpolarizabilities of squaric acid homologues.

  2. Neutrophil-delivered myeloperoxidase dampens the hydrogen peroxide burst after tissue wounding in zebrafish.

    Science.gov (United States)

    Pase, Luke; Layton, Judith E; Wittmann, Christine; Ellett, Felix; Nowell, Cameron J; Reyes-Aldasoro, Constantino Carlos; Varma, Sony; Rogers, Kelly L; Hall, Chris J; Keightley, M Cristina; Crosier, Philip S; Grabher, Clemens; Heath, Joan K; Renshaw, Stephen A; Lieschke, Graham J

    2012-10-09

    Prompt neutrophil arrival is critical for host defense immediately after injury [1-3]. Following wounding, a hydrogen peroxide (H(2)O(2)) burst generated in injured tissues is the earliest known leukocyte chemoattractant [4]. Generating this tissue-scale H(2)O(2) gradient uses dual oxidase [4] and neutrophils sense H(2)O(2) by a mechanism involving the LYN Src-family kinase [5], but the molecular mechanisms responsible for H(2)O(2) clearance are unknown [6]. Neutrophils carry abundant amounts of myeloperoxidase, an enzyme catalyzing an H(2)O(2)-consuming reaction [7, 8]. We hypothesized that this neutrophil-delivered myeloperoxidase downregulates the high tissue H(2)O(2) concentrations that follow wounding. This was tested in zebrafish using simultaneous fluorophore-based imaging of H(2)O(2) concentrations and leukocytes [4, 9-11] and a new neutrophil-replete but myeloperoxidase-deficient mutant (durif). Leukocyte-depleted zebrafish had an abnormally sustained wound H(2)O(2) burst, indicating that leukocytes themselves were required for H(2)O(2) downregulation. Myeloperoxidase-deficient zebrafish also had abnormally sustained high wound H(2)O(2) concentrations despite similar numbers of arriving neutrophils. A local H(2)O(2)/myeloperoxidase interaction within wound-recruited neutrophils was demonstrated. These data demonstrate that leukocyte-delivered myeloperoxidase cell-autonomously downregulates tissue-generated wound H(2)O(2) gradients in vivo, defining a new requirement for myeloperoxidase during inflammation. Durif provides a new animal model of myeloperoxidase deficiency closely phenocopying the prevalent human disorder [7, 12, 13], offering unique possibilities for investigating its clinical consequences.

  3. Oleic, Linoleic and Linolenic Acids Increase ROS Production by Fibroblasts via NADPH Oxidase Activation

    Science.gov (United States)

    Hatanaka, Elaine; Dermargos, Alexandre; Hirata, Aparecida Emiko; Vinolo, Marco Aurélio Ramirez; Carpinelli, Angelo Rafael; Newsholme, Philip; Armelin, Hugo Aguirre; Curi, Rui

    2013-01-01

    The effect of oleic, linoleic and γ-linolenic acids on ROS production by 3T3 Swiss and Rat 1 fibroblasts was investigated. Using lucigenin-amplified chemiluminescence, a dose-dependent increase in extracellular superoxide levels was observed during the treatment of fibroblasts with oleic, linoleic and γ-linolenic acids. ROS production was dependent on the addition of β-NADH or NADPH to the medium. Diphenyleneiodonium inhibited the effect of oleic, linoleic and γ-linolenic acids on fibroblast superoxide release by 79%, 92% and 82%, respectively. Increased levels of p47phox phosphorylation due to fatty acid treatment were detected by Western blotting analyses of fibroblast proteins. Increased p47phox mRNA expression was observed using real-time PCR. The rank order for the fatty acid stimulation of the fibroblast oxidative burst was as follows: γ-linolenic > linoleic > oleic. In conclusion, oleic, linoleic and γ-linolenic acids stimulated ROS production via activation of the NADPH oxidase enzyme complex in fibroblasts. PMID:23579616

  4. The INTEGRAL view of intermediate long X-ray bursts

    DEFF Research Database (Denmark)

    CONCLUSIONS Most intermediate bursts are observed from low luminosity sources and are interpreted as long pure He bursts. If no H is accreted, they are consistent with the burning of a slowly accreted, thick He layer, in Ultra Compact X-ray Binaries (UCXB) where the donor star is probably a degen...

  5. Supernova sheds light on gamma-ray bursts

    CERN Multimedia

    2003-01-01

    On 29 March the HETE-II satellite detected the most violent explosion in the universe to date - an enormous burst of gamma rays. Observers across the world recorded and studied the event. It appears to prove that gamma ray bursts originate in supernovae (1 page)

  6. Statistical properties of SGR 1806-20 bursts

    NARCIS (Netherlands)

    Göğüş, E.; Woods, P.M.; Kouveliotou, C.; van Paradijs, J.; Briggs, M.S.; Duncan, R.C.; Thompson, C.

    2000-01-01

    We present statistics of SGR 1806-20 bursts, combining 290 events detected with the Rossi X-Ray Timing Explorer/Proportional Counter Array, 111 events detected with the Burst and Transient Source Experiment, and 134 events detected with the International Cometary Explorer. We find that the fluence d

  7. Observations of cosmic gamma ray bursts with WATCH on EURECA

    DEFF Research Database (Denmark)

    Brandt, Søren; Lund, N.; Castro-Tirado, A. J.

    1995-01-01

    19 Cosmic Gamma-Ray Bursts were detected by the WATCH wide field X-ray monitor during the 11 months flight of EURECA. The identification of the bursts were complicated by a high frequency of background of events caused by high energy cosmic ray interactions in the detector and by low energy, trap...

  8. Gamma ray bursts observed with WATCH‐EURECA

    DEFF Research Database (Denmark)

    Brandt, Søren; Lund, Niels; Castro-Tirado, A. J.

    1994-01-01

    The WATCH wide field x‐ray monitor has the capability of independently locating bright Gamma Ray Bursts to 1° accuracy. We report the preliminary positions of 12 Gamma Ray Bursts observed with the WATCH monitor flown on the ES spacecraft EURECA during its 11 month mission. Also the recurrence of ...

  9. WATCH observations of gamma ray bursts during 1990–1992

    DEFF Research Database (Denmark)

    Castro-Tirado, A.; Brandt, Søren; Lund, Niels

    1994-01-01

    The first WATCH/GRANAT Gamma‐Ray Burst Catalogue comprises 70 events which have been detected by WATCH during the period December 1989–September 1992. 32 GRBs could be localized within a 3σ error radii of 1°. We have found a weak (2.2σ) clustering of these 32 bursts towards the Galactic Center. H...

  10. Nanoemulsions obtained via bubble bursting at a compound interface

    NARCIS (Netherlands)

    Feng, J.; Roche, M.; Vigolo, D.; Arnaudov, L.N.; Stoyanov, S.D.; Gurkov, T.D.; Tsutsumanova, G.G.; Stone, H.A.

    2014-01-01

    Bursting of bubbles at an air/liquid interface is a familiar occurrence relevant to foam stability, cell cultures in bioreactors and ocean–atmosphere mass transfer. In the latter case, bubble-bursting leads to the dispersal of sea-water aerosols in the surrounding air. Here we show that bubbles

  11. EEG Characteristics of Successful Burst Suppression for Refractory Status Epilepticus.

    Science.gov (United States)

    Johnson, Emily L; Martinez, Nirma Carballido; Ritzl, Eva K

    2016-12-01

    Refractory status epilepticus (RSE) is often treated with continuous intravenous medications with the goal of EEG burst suppression. Standard advice is to titrate medications to at least 10-s interburst intervals; however, this has not been shown to improve outcome. We examined EEG characteristics in patients treated with IV anesthetic therapy (IVAT) for RSE to determine which EEG characteristics were associated with successful lifting of IVAT (i.e., without recurrence of status epilepticus). We screened the clinical continuous EEG database for adult patients treated with IVAT for RSE (excluding patients with anoxic injury). We measured the length of bursts and interburst intervals for each patient, calculated EEG burst suppression ratios, and graded bursts for the amount of epileptiform activity. We compared these characteristics in successful versus unsuccessful IVAT lifting attempts. We included 17 successful and 20 unsuccessful lifting attempts in 19 patients (5 used as a holdout validation set). The interburst intervals, burst suppression ratios, and length of bursts did not differentiate successful and unsuccessful lifting attempts; the amount of epileptiform activity in bursts correlated with success or failure to wean IVAT (p = 0.008). Maximum burst amplitude RSE in this small cohort. This may suggest that EEG characteristics, rather a strict interburst interval goal, could guide IVAT for RSE.

  12. 49 CFR 179.400-6 - Bursting and buckling pressure.

    Science.gov (United States)

    2010-10-01

    ... 49 Transportation 2 2010-10-01 2010-10-01 false Bursting and buckling pressure. 179.400-6 Section 179.400-6 Transportation Other Regulations Relating to Transportation PIPELINE AND HAZARDOUS MATERIALS... and 107A) § 179.400-6 Bursting and buckling pressure. (a) [Reserved] (b) The outer jacket of the...

  13. Gamma-ray bursts observed by the watch experiment

    DEFF Research Database (Denmark)

    Lund, Niels; Brandt, Søren; Castro-Tirado, A. J.

    1991-01-01

    After two years in orbit the WATCH instruments on the GRANAT space observatory have localized seven gamma burst sources with better than 1° accuracy. In several cases, follow‐up observations with Schmidt telescopes have been made within a few days. Some of the bursts have also been detected...

  14. Manual evaluation of residual curarization using double burst stimulation

    DEFF Research Database (Denmark)

    Drenck, N E; Ueda, N; Olsen, Niels Vidiendal;

    1989-01-01

    Double burst stimulation (DBS) is a new mode of stimulation developed to reveal residual neuromuscular blockade under clinical conditions. The stimulus consists of two short bursts of 50 Hz tetanic stimulation, separated by 750 ms, and the response to the stimulation is two short muscle contracti...

  15. Jet simulations and gamma-ray burst afterglow jet breaks

    NARCIS (Netherlands)

    van Eerten, H. J.; Meliani, Z.; Wijers, R.A.M.J.; Keppens, R.

    2010-01-01

    The conventional derivation of the gamma-ray burst afterglow jet break time uses only the blast wave fluid Lorentz factor and therefore leads to an achromatic break. We show that in general gamma-ray burst afterglow jet breaks are chromatic across the self-absorption break. Depending on circumstance

  16. Jet simulations and gamma-ray burst afterglow jet breaks

    NARCIS (Netherlands)

    van Eerten, H. J.; Meliani, Z.; Wijers, Ramj; Keppens, R.

    2011-01-01

    The conventional derivation of the gamma-ray burst afterglow jet break time uses only the blast wave fluid Lorentz factor and therefore leads to an achromatic break. We show that in general gamma-ray burst afterglow jet breaks are chromatic across the self-absorption break. Depending on circumstance

  17. Jet simulations and gamma-ray burst afterglow jet breaks

    NARCIS (Netherlands)

    van Eerten, H.J.; Meliani, Z.; Wijers, R.A.M.J.; Keppens, R.

    2012-01-01

    The conventional derivation of the gamma-ray burst afterglow jet break time uses only the blast wave fluid Lorentz factor and therefore leads to an achromatic break. We show that in general gamma-ray burst afterglow jet breaks are chromatic across the self-absorption break. Depending on circumstance

  18. Jet simulations and gamma-ray burst afterglow jet breaks

    NARCIS (Netherlands)

    van Eerten, H. J.; Meliani, Z.; Wijers, Ramj; Keppens, R.

    2011-01-01

    The conventional derivation of the gamma-ray burst afterglow jet break time uses only the blast wave fluid Lorentz factor and therefore leads to an achromatic break. We show that in general gamma-ray burst afterglow jet breaks are chromatic across the self-absorption break. Depending on

  19. Jet simulations and gamma-ray burst afterglow jet breaks

    NARCIS (Netherlands)

    van Eerten, H. J.; Meliani, Z.; Wijers, R.A.M.J.; Keppens, R.

    2010-01-01

    The conventional derivation of the gamma-ray burst afterglow jet break time uses only the blast wave fluid Lorentz factor and therefore leads to an achromatic break. We show that in general gamma-ray burst afterglow jet breaks are chromatic across the self-absorption break. Depending on

  20. Nanoemulsions obtained via bubble bursting at a compound interface

    NARCIS (Netherlands)

    Feng, J.; Roche, M.; Vigolo, D.; Arnaudov, L.N.; Stoyanov, S.D.; Gurkov, T.D.; Tsutsumanova, G.G.; Stone, H.A.

    2014-01-01

    Bursting of bubbles at an air/liquid interface is a familiar occurrence relevant to foam stability, cell cultures in bioreactors and ocean–atmosphere mass transfer. In the latter case, bubble-bursting leads to the dispersal of sea-water aerosols in the surrounding air. Here we show that bubbles burs

  1. Dependence of X-ray Burst Models on Nuclear Masses

    CERN Document Server

    Schatz, H

    2016-01-01

    X-ray burst model predictions of light curves and final composition of the nuclear ashes are affected by uncertain nuclear physics. Nuclear masses play an important role. Significant progress has been made in measuring the masses of very neutron deficient rare isotopes along the path of the rapid proton capture process (rp-process) in X-ray bursts. This paper identifies the remaining nuclear mass uncertainties in X-ray burst models using a one zone model that takes into account the changes in temperature and density evolution caused by changes in the nuclear physics. Two types of bursts are investigated - a typical mixed H/He burst with a limited rp-process and an extreme mixed H/He burst with an extended rp-process. Only three remaining nuclear mass uncertainties affect the light curve predictions of a typical H/He burst, and only three additional masses affect the composition strongly. A larger number of mass uncertainties remains to be addressed for the extreme H/He burst. Mass uncertainties of better than...

  2. 76 FR 28460 - Agency Information Collection Activities; Submission for OMB Review; Comment Request; Rock Burst...

    Science.gov (United States)

    2011-05-17

    ...; Rock Burst Control Plan--Pertains to Underground Metal and Nonmetal Mines ACTION: Notice. SUMMARY: The... rock burst plan within 90 days after a rock burst has been experienced. Stress data are...

  3. Existence of aa3-type ubiquinol oxidase as a terminal oxidase in sulfite oxidation of Acidithiobacillus thiooxidans.

    Science.gov (United States)

    Sugio, Tsuyoshi; Hisazumi, Tomohiro; Kanao, Tadayoshi; Kamimura, Kazuo; Takeuchi, Fumiaki; Negishi, Atsunori

    2006-07-01

    It was found that Acidithiobacillus thiooxidans has sulfite:ubiquinone oxidoreductase and ubiquinol oxidase activities in the cells. Ubiquinol oxidase was purified from plasma membranes of strain NB1-3 in a nearly homogeneous state. A purified enzyme showed absorption peaks at 419 and 595 nm in the oxidized form and at 442 and 605 nm in the reduced form. Pyridine ferrohaemochrome prepared from the enzyme showed an alpha-peak characteristic of haem a at 587 nm, indicating that the enzyme contains haem a as a component. The CO difference spectrum of ubiquinol oxidase showed two peaks at 428 nm and 595 nm, and a trough at 446 nm, suggesting the existence of an aa(3)-type cytochrome in the enzyme. Ubiquinol oxidase was composed of three subunits with apparent molecular masses of 57 kDa, 34 kDa, and 23 kDa. The optimum pH and temperature for ubiquinol oxidation were pH 6.0 and 30 degrees C. The activity was completely inhibited by sodium cyanide at 1.0 mM. In contrast, the activity was inhibited weakly by antimycin A(1) and myxothiazol, which are inhibitors of mitochondrial bc(1) complex. Quinone analog 2-heptyl-4-hydoroxyquinoline N-oxide (HOQNO) strongly inhibited ubiquinol oxidase activity. Nickel and tungstate (0.1 mM), which are used as a bacteriostatic agent for A. thiooxidans-dependent concrete corrosion, inhibited ubiquinol oxidase activity 100 and 70% respectively.

  4. Current status of NADPH oxidase research in cardiovascular pharmacology

    Directory of Open Access Journals (Sweden)

    Rodiño-Janeiro BK

    2013-07-01

    Full Text Available Bruno K Rodiño-Janeiro,1,2 Beatriz Paradela-Dobarro,1 María Isabel Castiñeiras-Landeira,1 Sergio Raposeiras-Roubín,1,3 José R González-Juanatey,1,3,4 Ezequiel Álvarez1,4 1Health Research Institute of Santiago de Compostela, Santiago de Compostela, Spain; 2European Molecular Biology Laboratory, Grenoble, France; 3Cardiology Department, University Clinic Hospital of Santiago de Compostela, Santiago de Compostela, Spain; 4Medicine Department, University of Santiago de Compostela, Santiago de Compostela, Spain Abstract: The implications of reactive oxygen species in cardiovascular disease have been known for some decades. Rationally, therapeutic antioxidant strategies combating oxidative stress have been developed, but the results of clinical trials have not been as good as expected. Therefore, to move forward in the design of new therapeutic strategies for cardiovascular disease based on prevention of production of reactive oxygen species, steps must be taken on two fronts, ie, comprehension of reduction-oxidation signaling pathways and the pathophysiologic roles of reactive oxygen species, and development of new, less toxic, and more selective nicotinamide adenine dinucleotide phosphate (NADPH oxidase inhibitors, to clarify both the role of each NADPH oxidase isoform and their utility in clinical practice. In this review, we analyze the value of NADPH oxidase as a therapeutic target for cardiovascular disease and the old and new pharmacologic agents or strategies to prevent NADPH oxidase activity. Some inhibitors and different direct or indirect approaches are available. Regarding direct NADPH oxidase inhibition, the specificity of NADPH oxidase is the focus of current investigations, whereas the chemical structure-activity relationship studies of known inhibitors have provided pharmacophore models with which to search for new molecules. From a general point of view, small-molecule inhibitors are preferred because of their hydrosolubility

  5. HIF-1α activation by intermittent hypoxia requires NADPH oxidase stimulation by xanthine oxidase.

    Science.gov (United States)

    Nanduri, Jayasri; Vaddi, Damodara Reddy; Khan, Shakil A; Wang, Ning; Makarenko, Vladislav; Semenza, Gregg L; Prabhakar, Nanduri R

    2015-01-01

    Hypoxia-inducible factor 1 (HIF-1) mediates many of the systemic and cellular responses to intermittent hypoxia (IH), which is an experimental model that simulates O2 saturation profiles occurring with recurrent apnea. IH-evoked HIF-1α synthesis and stability are due to increased reactive oxygen species (ROS) generated by NADPH oxidases, especially Nox2. However, the mechanisms by which IH activates Nox2 are not known. We recently reported that IH activates xanthine oxidase (XO) and the resulting increase in ROS elevates intracellular calcium levels. Since Nox2 activation requires increased intracellular calcium levels, we hypothesized XO-mediated calcium signaling contributes to Nox activation by IH. We tested this possibility in rat pheochromocytoma PC12 cells subjected to IH consisting alternating cycles of hypoxia (1.5% O2 for 30 sec) and normoxia (21% O2 for 5 min). Kinetic analysis revealed that IH-induced XO preceded Nox activation. Inhibition of XO activity either by allopurinol or by siRNA prevented IH-induced Nox activation, translocation of the cytosolic subunits p47phox and p67phox to the plasma membrane and their interaction with gp91phox. ROS generated by XO also contribute to IH-evoked Nox activation via calcium-dependent protein kinase C stimulation. More importantly, silencing XO blocked IH-induced upregulation of HIF-1α demonstrating that HIF-1α activation by IH requires Nox2 activation by XO.

  6. Do Gamma-Ray Bursts Come from the Oort Cloud?

    CERN Document Server

    Clarke, T E; Tremaine, S; Tremaine, adn S.

    1993-01-01

    We examine the possibility that gamma-ray bursts arise from sources in the Oort comet cloud, basing most of our arguments on accepted models for the formation and spatial distribution of the cloud. We identify three severe problems with such models: (1) There is no known mechanism for producing bursts that can explain the observed burst rate and energetics without violating other observational constraints. (2) The bright source counts cannot be reconciled with standard models for the phase-space distribution of objects in the Oort cloud. (3) The observed isotropy of the available burst data is inconsistent with the expected angular distribution of sources in the Oort cloud. We therefore assert that Oort cloud models of gamma-ray bursts are extremely implausible.

  7. Fast Radio Bursts: Constraints on the Dispersing Medium

    CERN Document Server

    Dennison, Brian

    2014-01-01

    Fast radio bursts appear to exhibit large dispersion measures, typically exceeding any expected galactic interstellar contribution, especially along the moderate to high-galactic-latitude directions in which such events have been most often observed. The dispersions have been therefore interpreted as extragalactic, leading to the inference that the sources of the bursts are at Gpc distances. This then implies that the bursts are extremely energetic events, originating from quite small volumes (due to the millisecond burst durations). To circumvent the energetic difficulties, Loeb, Shvartzvald, & Maoz (2014) propose that the bursts are produced by flares near the surfaces of M stars or contact binaries within a local volume of the galaxy. Most of the dispersion would then occur in the overlying stellar coronae. With the dispersion concentrated in a relatively high density region, the quadratic dispersion approximation breaks down as the plasma frequency is comparable to (although less than) the propagation...

  8. The supernova-gamma-ray burst-jet connection.

    Science.gov (United States)

    Hjorth, Jens

    2013-06-13

    The observed association between supernovae and gamma-ray bursts represents a cornerstone in our understanding of the nature of gamma-ray bursts. The collapsar model provides a theoretical framework for this connection. A key element is the launch of a bipolar jet (seen as a gamma-ray burst). The resulting hot cocoon disrupts the star, whereas the (56)Ni produced gives rise to radioactive heating of the ejecta, seen as a supernova. In this discussion paper, I summarize the observational status of the supernova-gamma-ray burst connection in the context of the 'engine' picture of jet-driven supernovae and highlight SN 2012bz/GRB 120422A--with its luminous supernova but intermediate high-energy luminosity--as a possible transition object between low-luminosity and jet gamma-ray bursts. The jet channel for supernova explosions may provide new insights into supernova explosions in general.

  9. Evaluating the risk of coal bursts in underground coal mines

    Institute of Scientific and Technical Information of China (English)

    Mark Christopher⇑; Gauna Michael

    2016-01-01

    Coal bursts involve the sudden, violent ejection of coal or rock into the mine workings. They are almost always accompanied by a loud noise, like an explosion, and ground vibration. Bursts are a particular haz-ard for miners because they typically occur without warning. Despite decades of research, the sources and mechanics of these events are not well understood, and therefore they are difficult to predict and control. Experience has shown, however, that certain geologic and mining factors are associated with an increased likelihood of a coal burst. A coal burst risk assessment consists of evaluating the degree to which these risk factors are present, and then identifying appropriate control measures to mitigate the hazard. This paper summarizes the U.S. and international experience with coal bursts, and describes the known risk factors in detail. It includes a framework that can be used to guide the risk assessment process.

  10. Taming desynchronized bursting with delays in the Macaque cortical network

    Institute of Scientific and Technical Information of China (English)

    Wang Qing-Yun; Murks Aleksandra; Perc Matja(z); Lu Qi-Shao

    2011-01-01

    Inhibitory coupled bursting Hindmarsh-Rose neurons are considered as constitutive units of the Macaque cortical network. In the absence of information transmission delay the bursting activity is desynchronized, giving rise to spatiotemporally disordered dynamics. This paper shows that the introduction of finite delays can lead to the synchroization of bursting and thus to the emergence of coherent propagating fronts of excitation in the space-time domain.Moreover, it shows that the type of synchronous bursting is uniquely determined by the delay length, with the transitions from one type to the other occurring in a step-like manner depending on the delay. Interestingly, as the delay is tuned close to the transition points, the synchronization deteriorates, which implies the coexistence of different bursting attractors. These phenomena can be observed be different but fixed coupling strengths, thus indicating a new role for information transmission delays in realistic neuronal networks.

  11. Kilometric shock-associated events and microwave bursts

    Science.gov (United States)

    Kundu, M. R.; Macdowall, R. J.; Stone, R. G.

    1990-01-01

    The peak times of impulsive microwaves bursts are compared with those of shock-associated (SA) kilometric radio events. The first peaks in these two frequency regimes are usually well-correlated in time, but the last peaks of the SA events observed at 1 MHz occur an average of 20 min after the last impulsive microwave peaks. In some cases, the SA events overlap in time with the post-burst increases of microwave bursts; sometimes there is general correspondence in their intensity time profiles. These observations suggest that the earlier components of the SA events are usually caused by electrons accelerated in or near the microwave source region. The possibility that the later components of some SA events could be associated with nonthermal electrons responsible for microwave post-burst increases, although they have traditionally been attributed to electrons accelerated at type II burst producing shocks in the upper corona is discussed.

  12. Cosmology and the Subgroups of Gamma-ray Bursts

    Directory of Open Access Journals (Sweden)

    A. Mészáros

    2011-01-01

    Full Text Available Both short and intermediate gamma-ray bursts are distributed anisotropically in the sky (Mészáros, A. et al. ApJ, 539, 98 (2000, Vavrek, R. et al. MNRAS, 391, 1 741 (2008. Hence, in the redshift range, where these bursts take place, the cosmological principle is in doubt. It has already been noted that short bursts should be mainly at redshifts smaller than one (Mészáros, A. et al. Gamma-ray burst: Sixth Huntsville Symp., AIP, Vol. 1 133, 483 (2009; Mészáros, A. et al. Baltic Astron., 18, 293 (2009. Here we show that intermediate bursts should be at redshifts up to three.

  13. Review of GRANAT observations of gamma-ray bursts

    DEFF Research Database (Denmark)

    Terekhov, O.; Denissenko, D.; Sunyaev, R.;

    1995-01-01

    The GRANAT observatory was launched into a high apogee orbit on 1 December, 1989. Three instruments onboard GRANAT - PHEBUS, WATCH and SIGMA are able to detect gamma-ray bursts in a very broad energy range from 6 keV up to 100 MeV. Over 250 gamma-ray bursts were detected. We discuss the results...... of four differently behaving componenents in gamma-ray burst spectra is discussed. Statistical properties of the gamma-ray burst sources based on the 5 years of observations with (∼ 10−6 erg/cm2) sensitivity as well as the results of high sensitivity (∼ 10−8 erg/cm2) search for Gamma-Ray Bursts within...... the SIGMA telescope field of view are reviewed....

  14. X-ray bursts and superbursts - recent developments

    CERN Document Server

    Zand, Jean in 't

    2011-01-01

    The past decade and a half has seen many interesting new developments in X-ray burst research, both observationally and theoretically. New phenomena were discovered, such as burst oscillations and superbursts, and new regimes of thermonuclear burning identified. An important driver of the research with present and future instrumentation in the coming years is the pursuit of fundamental neutron star parameters. However, several other more direct questions are also in dire need of an answer. For instance, how are superbursts ignited and why do burst oscillations exist in burst tails? We briefly review recent developments and discuss the role that MAXI can play. Thanks to MAXI's large visibility window and large duty cycle, it is particularly well suited to investigate the recurrence of rare long duration bursts such as superbursts. An exploratory study of MAXI data is briefly presented.

  15. Ablation of silicon with bursts of femtosecond laser pulses

    Science.gov (United States)

    Gaudiuso, Caterina; Kämmer, Helena; Dreisow, Felix; Ancona, Antonio; Tünnermann, Andreas; Nolte, Stefan

    2016-03-01

    We report on an experimental investigation of ultrafast laser ablation of silicon with bursts of pulses. The pristine 1030nm-wavelength 200-fs pulses were split into bursts of up to 16 sub-pulses with time separation ranging from 0.5ps to 4080ps. The total ablation threshold fluence was measured depending on the burst features, finding that it strongly increases with the number of sub-pulses for longer sub-pulse delays, while a slowly increasing trend is observed for shorter separation time. The ablation depth per burst follows two different trends according to the time separation between the sub-pulses, as well as the total threshold fluence. For delays shorter than 4ps it decreases with the number of pulses, while for time separations longer than 510ps, deeper craters were achieved by increasing the number of subpulses in the burst, probably due to a change of the effective penetration depth.

  16. Long Duration X-ray Bursts Observed by MAXI

    Science.gov (United States)

    Serino, Motoko; Iwakiri, Wataru; Tamagawa, Toru; Sakamoto, Takanori; Nakahira, Satoshi; Matsuoka, Masaru; Yamaoka, Kazutaka; Negoro, Hitoshi

    Monitor of All-sky X-ray Image (MAXI) is X-ray mission on the International Space Station. MAXI scans all sky every 92 min and detects various X-ray transient events including X-ray bursts. Among the X-ray bursts observed by MAXI, eleven had long duration and were observed more than one scan. Six out of eleven long bursts have the e-folding time of >1 h, that should be classified as "superbursts", while the rest are "intermediate-duration bursts". The total emitted energy of these long X-ray bursts range from 1041 to 1042 ergs. The lower limits of the superburst recurrence time of 4U 0614+091 and Ser X-1 are calculated as 4400 and 59 days, which may be consistent with the observed recurrence time of 3523 and 1148 days, respectively.

  17. High-Frequency Cutoff in Type III Bursts

    Science.gov (United States)

    Stanislavsky, A. A.; Konovalenko, A. A.; Volvach, Ya. S.; Koval, A. A.

    In this article we report about a group of solar bursts with high-frequency cutoff, observed on 19 August of 2012 near 8:23 UT, simultaneously by three different radio telescopes: the Ukrainian decameter radio telescope (8-33 MHz), the French Nancay Decametric Array (10-70 MHz) and the Italian San Vito Solar Observatory of RSTN (25-180 MHz). Morphologically the bursts are very similar to the type III bursts. The solar activity is connected with the emergency of a new group of solar spots on the far side of the Sun with respect to observers on Earth. The solar bursts accompany many moderate flares over eastern limb. The refraction of the behind-limb radio bursts towards the Earth is favorable, if CMEs generate low-density cavities in solar corona.

  18. Long X-ray burst monitoring with INTEGRAL

    DEFF Research Database (Denmark)

    X-ray bursts are thermonuclear explosions on the surface of accreting neutron stars in low mass X-ray binary systems. In the frame of the INTEGRAL observational Key Programme over the Galactic Center a good number of the known X-ray bursters are frequently being monitored. An international...... collaboration lead by the JEM-X team at the Danish National Space Center has proposed to exploit the improved sensitivity of the INTEGRAL instruments to investigate the observational properties and physics up to high energies of exceptional burst events lasting between a few tens of minutes and several hours....... Of special interest are low luminosity bursting sources that exhibit X-ray bursts of very different durations allowing to study the transition from a hydrogen-rich bursting regime to a pure helium regime and from helium burning to carbon burning. I will present results obtained from INTEGRAL archive data...

  19. A mitochondrial CO2-adenylyl cyclase-cAMP signalosome controls yeast normoxic cytochrome c oxidase activity.

    Science.gov (United States)

    Hess, Kenneth C; Liu, Jingjing; Manfredi, Giovanni; Mühlschlegel, Fritz A; Buck, Jochen; Levin, Lonny R; Barrientos, Antoni

    2014-10-01

    Mitochondria, the major source of cellular energy in the form of ATP, respond to changes in substrate availability and bioenergetic demands by employing rapid, short-term, metabolic adaptation mechanisms, such as phosphorylation-dependent protein regulation. In mammalian cells, an intramitochondrial CO2-adenylyl cyclase (AC)-cyclic AMP (cAMP)-protein kinase A (PKA) pathway regulates aerobic energy production. One target of this pathway involves phosphorylation of cytochrome c oxidase (COX) subunit 4-isoform 1 (COX4i1), which modulates COX allosteric regulation by ATP. However, the role of the CO2-sAC-cAMP-PKA signalosome in regulating COX activity and mitochondrial metabolism and its evolutionary conservation remain to be fully established. We show that in Saccharomyces cerevisiae, normoxic COX activity measured in the presence of ATP is 55% lower than in the presence of ADP. Moreover, the adenylyl cyclase Cyr1 activity is present in mitochondria, and it contributes to the ATP-mediated regulation of COX through the normoxic subunit Cox5a, homologue of human COX4i1, in a bicarbonate-sensitive manner. Furthermore, we have identified 2 phosphorylation targets in Cox5a (T65 and S43) that modulate its allosteric regulation by ATP. These residues are not conserved in the Cox5b-containing hypoxic enzyme, which is not regulated by ATP. We conclude that across evolution, a CO2-sAC-cAMP-PKA axis regulates normoxic COX activity.

  20. Short Gamma-Ray Bursts with Extended Emission

    Science.gov (United States)

    Norris, J. P.; Bonnell, J. T.

    2005-01-01

    The recent association of several short gamma-ray bursts (GRBs) with early type galaxies with low star formation rate demonstrates that short bursts arise from a different progenitor mechanism than long bursts. However, since the duration distributions of the two classes overlap, membership is not always easily established. The picture is complicated by the occasional presence of softer, extended emission lasting tens of seconds after the initial spike- like emission comprising an otherwise short burst. Using the large BATSE sample with time-tagged event (TTE) data, we show that the fundamental defining characteristic of the short burst class is that the initial spike exhibits negligible spectral evolution at energies above approx. 25 keV. This is behavior is nearly ubiquitous for the 260 bursts with T(sub 90) less than 2s where the BATSE TTE data type completely included the initial spike: Their spectral lags measured between the 25-50 keV and 100-300 energy ranges are consistent with zero in 90-95% of the cases, with most outliers probably representing the tail of the long burst class. We also analyze a small sample of "short" BATSE bursts - those with the most fluent, intense extended emission. The same lack of evolution on the pulse timescale obtains for the extended emission in the brighter bursts where significant measurements can be made. One possible inference is that both emission components may arise in the same region. We also show that the dynamic range in the ratio of peak intensities, spike : extended, is at least approx. l0(exp 3), and that for some bursts, the extended emission is only a factor of 2-5 lower. However, for our whole sample the total counts fluence of the extended component equals or exceeds that in the spike by a factor of several.

  1. A POSSIBLE CONNECTION BETWEEN FAST RADIO BURSTS AND GAMMA-RAY BURSTS

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Bing [Department of Physics and Astronomy, University of Nevada Las Vegas, NV 89154 (United States)

    2014-01-10

    The physical nature of fast radio bursts (FRBs), a new type of cosmological transient discovered recently, is not known. It has been suggested that FRBs can be produced when a spinning supra-massive neutron star loses centrifugal support and collapses to a black hole. Here, we suggest that such implosions can happen in supra-massive neutron stars shortly (hundreds to thousands of seconds) after their births, and an observational signature of such implosions may have been observed in the X-ray afterglows of some long and short gamma-ray bursts (GRBs). Within this picture, a small fraction of FRBs would be physically connected to GRBs. We discuss possible multi-wavelength electromagnetic signals and gravitational wave signals that might be associated with FRBs, and propose an observational campaign to unveil the physical nature of FRBs. In particular, we strongly encourage a rapid radio follow-up observation of GRBs starting from 100 s after a GRB trigger.

  2. Gamma-ray burst afterglow theory

    CERN Document Server

    van Eerten, Hendrik

    2013-01-01

    It is by now fairly well established that gamma-ray burst afterglows result from initially relativistic outflows interacting with the medium surrounding the burster and emitting non-thermal radiation ranging from radio to X-rays. However, beyond that, many big and small questions remain about afterglows, with the accumulating amount of observational data at the various frequencies raising as many questions as they answer. In this review I highlight a number of current theoretical issues and how they fit or do not fit within our basic theoretical framework. In addition to theoretical progress I will also emphasize the increasing role and usefulness of numerical studies of afterglow blast waves and their radiation.

  3. A Different Cone: Bursting Drops in Solids

    Science.gov (United States)

    Zhao, Xuanhe

    2013-03-01

    Drops in fluids tend to be spheres--a shape that minimizes surface energy. In thunderstorm clouds, drops can become unstable and emit thin jets when charged beyond certain limits. The instability of electrified drops in gases and liquids has been widely studied and used in applications including ink-jet printing, electrospinning nano-fibers, microfluidics and electrospray ionization. Here we report a different scenario: drops in solids become unstable and burst under sufficiently high electric fields. We find the instability of drops in solids morphologically resembles that in liquids, but the critical electric field for the instability follows a different scaling due to elasticity of solids. Our observations and theoretical models not only advance the fundamental understanding of electrified drops but also suggest a new failure mechanism of high-energy-density dielectric polymers, which have diverse applications ranging from capacitors for power grids and electric vehicles to muscle-like transducers for soft robots and energy harvesting.

  4. Black Holes, Supernovae and Gamma Ray Bursts

    CERN Document Server

    Ruffini, Remo

    2013-01-01

    We review recent progress in our understanding of the nature of gamma ray bursts (GRBs) and in particular, of the relationship between short GRBs and long GRBs. The first example of a short GRB is described. The coincidental occurrence of a GRB with a supernova (SN) is explained within the induced gravitational collapse (IGC) paradigm, following the sequence: 1) an initial binary system consists of a compact carbon-oxygen (CO) core star and a neutron star (NS); 2) the CO core explodes as a SN, and part of the SN ejecta accretes onto the NS which reaches its critical mass and collapses to a black hole (BH) giving rise to a GRB; 3) a new NS is generated by the SN as a remnant. The observational consequences of this scenario are outlined.

  5. Synchrotron masers and fast radio bursts

    CERN Document Server

    Ghisellini, Gabriele

    2016-01-01

    Fast Radio Bursts (FRBs), with a typical duration of 1 ms and 1 Jy flux density at GHz frequencies, have brightness temperatures exceeding 1e33 K, requiring a coherent emission process. This can be achieved by bunching particles in volumes smaller than the typical wavelength, but this may be challenging. Alternatively, we can have maser emission. Under certain conditions, the synchrotron stimulated emission process can be more important than true absorption, and a synchrotron maser can be created. This occurs when the emitting electrons have a very narrow distribution of pitch angles and energies. This process overcomes the difficulties of having extremely dense bunches of particles and relaxes the light crossing time limits, since there is no simple relation between the actual size of the source and the observed variability timescale.

  6. Search for Gamma Ray Bursts at Chacaltaya

    CERN Document Server

    Vernetto, S

    2001-01-01

    A search for Gamma Ray Bursts in the GeV-TeV energy range has been performed by INCA, an air shower array working at 5200 m of altitude at the Chacaltaya Laboratory (Bolivia). The altitude of the detector and the use of the "single particle technique" allows to lower the energy threshold up to few GeVs. No significant signals are observed during the occurrence of 125 GRBs detected by BATSE, and the obtained upper limits on the energy fluence in the interval 1-1000(100) GeV range from 3.2(8.6) 10^-5 to 2.6(7.0) 10^-2 erg/cm^2 depending on the zenith angle of the events. These limits, thanks to the extreme altitude of INCA, are the lowest ever obtained in the sub-TeV energy region by a ground based esperiment.

  7. The Gamma Ray Bursts Hubble diagram

    CERN Document Server

    Capozziello, S; Dainotti, M G; De Laurentis, M; Izzo, L; Perillo, M

    2011-01-01

    Thanks to their enormous energy release, Gamma Rays Bursts (GRBs) have recently attracted a lot of interest to probe the Hubble diagram (HD) deep into the matter dominated era and hence complement Type Ia Supernovae (SNeIa). We consider here three different calibration methods based on the use of a fiducial LCDM model, on cosmographic parameters and on the local regression on SNeIa to calibrate the scaling relations proposed as an equivalent to the Phillips law to standardize GRBs finding any significant dependence. We then investigate the evolution of these parameters with the redshift to obtain any statistical improvement. Under this assumption, we then consider possible systematics effects on the HDs introduced by the calibration method, the averaging procedure and the homogeneity of the sample arguing against any significant bias.

  8. Critical Test Of Gamma Ray Burst Theories

    CERN Document Server

    Dado, Shlomo

    2016-01-01

    Long and precise follow-up measurements of the X-ray afterglow (AG) of very intense gamma ray bursts (GRBs) provide a critical test of GRB afterglow theories. Here we show that the power-law decline with time of X-ray AG of GRB 130427A, the longest measured X-ray AG of an intense GRB with the Swift, Chandra and XMM Newton satellites, and of all other well measured late-time X-ray afterglow of intense GRBs, is that predicted by the cannonball (CB) model of GRBs from their measured spectral index, while it disagrees with that predicted by the widely accepted fireball (FB) models of GRBs.

  9. Microstructural path analysis of martensite burst

    Directory of Open Access Journals (Sweden)

    Paulo Rangel Rios

    2010-03-01

    Full Text Available Modeling the martensite reaction requires reckoning with spatial aspects of the reaction. For that, we used formal kinetics, more specifically, the microstructural path method (MPM to analyze the microstructure observed in a burst. The microstructural path analysis revealed that the size of the spread cluster in extended space, characterized by the Vandermeer and Juul-Jensen's impingement compensated mean intercept length, λG, remained constant, independently of the parent austenite grain size. Moreover, current analysis introduced a purely formal description of the reaction progress by taking the parent austenite grain size as the progress variable. This description worked very well and resulted in a relationship between the volume fraction of partially transformed austenite, V VG, and austenite grain size, λG. The significance of these findings in the light of the advantages and disadvantages of formal kinetics is discussed.

  10. Synchrotron masers and fast radio bursts

    Science.gov (United States)

    Ghisellini, G.

    2017-02-01

    Fast radio bursts, with a typical duration of 1 ms and 1 Jy flux density at gigahertz frequencies, have brightness temperatures exceeding 1033 K, requiring a coherent emission process. This can be achieved by bunching particles in volumes smaller than the typical wavelength, but this may be challenging. Maser emission is a possibility. Under certain conditions, the synchrotron-stimulated emission process can be more important than true absorption, and a synchrotron maser can be created. This occurs when the emitting electrons have a very narrow distribution of pitch angles and energies. This process overcomes the difficulties of having extremely dense bunches of particles and relaxes the light-crossing time limits, since there is no simple relation between the actual size of the source and the observed variability time-scale.

  11. Gamma ray bursts and their afterglows

    Science.gov (United States)

    Nicuesa Guelbenzu, A.

    2017-03-01

    Gamma-Ray Bursts (GRBs) were among the greatest mysteries in modern astrophysics. They were first observed 50 years ago but it took three decades before optical counterparts could be found and the underlying physical phenomena studied in detail. GRB research represents currently one of the most rapidly growing areas in extragalactic astronomy. This is due in large part to the numerous connections that GRBs have with other disciplines like cosmology, supernovae, stellar evolution, nuclear physics, astroparticle and gravitational wave astronomy. Therefore, their study is of great importance to understand various astrophysical phenomena such as the formation of the first stars, the chemical evolution and the expansion of the Universe. Since gamma radiation can travel along cosmological distances without being affected by any possible intervening absorption, GRBs can be detected from the most distant universe, reaching redshifts up to z = 10 or more.

  12. Relativistic Outflows in Gamma-Ray Bursts

    CERN Document Server

    Aloy, M A

    2007-01-01

    The possibility that gamma-ray bursts (GRBs) were not isotropic emissions was devised theoretically as a way to ameliorate the huge energetic budget implied by the standard fireball model for these powerful phenomena. However, the mechanism by which after the quasy-isotropic release of a few $10^{50} $erg yields a collimated ejection of plasma could not be satisfactory explained analytically. The reason being that the collimation of an outflow by its progenitor system depends on a very complex and non-linear dynamics. That has made necessary the use of numerical simulations in order to shed some light on the viability of some likely progenitors of GRBs. In this contribution I will review the most relevant features shown by these numerical simulations and how they have been used to validate the collapsar model (for long GRBs) and the model involving the merger of compact binaries (for short GRBs).

  13. Radio Afterglows of Gamma Ray Bursts

    Science.gov (United States)

    Resmi, Lekshmi

    2017-09-01

    This review focuses on the physics of Gamma Ray Bursts probed through their radio afterglow emission. Even though radio band is the least explored of the afterglow spectrum, it has played an important role in the progress of GRB physics, specifically in confirming the hypothesized relativistic effects. Currently radio astronomy is in the beginning of a revolution. The high sensitive Square Kilometer Array (SKA) is being planned, its precursors and pathfinders are about to be operational, and several existing instruments are undergoing upgradation. Thus, the afterglow results from detection statistics and follow up programs are expected to improve in the coming years. We list a few avenues unique to radio band which if explored to full potential have the promise to greatly contribute to the future of GRB physics.

  14. Pentamines as substrate for human spermine oxidase

    Science.gov (United States)

    Takao, Koichi; Shirahata, Akira; Samejima, Keijiro; Casero, Robert A.; Igarashi, Kazuei; Sugita, Yoshiaki

    2013-01-01

    Substrate activities of various linear polyamines to human spermine oxidase (hSMO) were investigated. The activities were evaluated by monitoring the amount of H2O2 released from sample polyamines by hSMO. H2O2 was measured by a HPLC method that analyzed fluorescent dimers derived from the oxidation of homovanillic acid in the presence of horseradish peroxidase. Six triamines were tested and were found not to be hSMO substrates. Of sixteen tetramines tested, spermine (Spm) was the most active substrate, followed by homospermine and N-butylated Spm. Pentamines showed a characteristic pattern of substrate activity. Of thirteen pentamines tested, 3343 showed higher substrate activity than Spm, and 4343 showed similar activity to Spm. The activities of the other pentamines were as follows: 3443, 4443, 4344, 3344, 4334, 4444, and 3334 (in decreasing order). Product amines released from these pentamines by hSMO were then analyzed by HPLC. Triamine was the only observed product, and the amount of triamine was nearly equivalent to that of released H2O2. A marked difference in the pH dependency curves between tetramines and pentamines suggested that hSMO favored reactions with a non-protonated secondary nitrogen at the cleavage site. The Km and Vmax values for Spm and 3343 at pH 7.0 and 9.0 were consistent with the higher substrate activity of 3343 compared to Spm, as well as with the concept of a non-protonated secondary nitrogen at the cleavage site being preferred, and 3343 was well degraded at a physiological pH by hSMO. PMID:23449327

  15. Forage Polyphenol Oxidase and Ruminant Livestock Nutrition

    Directory of Open Access Journals (Sweden)

    Michael Richard F. Lee

    2014-12-01

    Full Text Available Polyphenol oxidase (PPO is associated with the detrimental effect of browning fruit and vegetables, however interest within PPO containing forage crops has grown since the brownng reaction was associated with reduced nitrogen (N losses in silo and the rumen. The reduction in protein breakdown in silo of red clover (high PPO forage increased the quality of protein, improving N-use efficiency (NUE when fed to ruminants. A further benefit of red clover silage feeding is a significant reduction in lipolysis in silo and an increase in the deposition of beneficial C18 polyunsaturated fatty acid (PUFA in animal products, which has also been linked to PPO activity. PPOs protection of plant protein and glycerol based-PUFA in silo is related to the deactivation of plant proteases and lipases. This deactivation occurs through PPO catalysing the conversion of diphenols to quinones which bind with cellular nucleophiles such as protein reforming a protein-bound phenol (PBP. If the protein is an enzyme the complexing denatures the enzyme. However, PPO is inactive in the anaerobic rumen and therefore any subsequent protection of plant protein and glycerol based-PUFA in the rumen must be as a result of events that occurred to the forage pre-ingestion. Reduced activity of plant proteases and lipases would have little effect on NUE and glycerol based-PUFA in the rumen due to the greater concentration of rumen microbial proteases and lipases. The mechanism for PPOs protection of plant protein in the rumen is a consequence of complexing plant protein, rather than protease deactivation per se. These complexed proteins reduce protein digestibility in the rumen and subsequently increase un-degraded dietary protein flow to the small intestine. The mechanism for protecting glycerol-based PUFA has yet to be fully elucidated but may be associated with entrapment within PBP reducing access to microbial lipases or differences in rumen digestion kinetics of red clover.

  16. Monitoring burst (M-burst) — A novel framework of failure localization in all-optical mesh networks

    KAUST Repository

    Ali, Mohammed L.

    2011-10-10

    Achieving instantaneous and precise failure localization in all-optical wavelength division multiplexing (WDM) networks has been an attractive feature of network fault management systems, and is particularly important when failure-dependent protection is employed. The paper introduces a novel framework of real-time failure localization in all-optical WDM mesh networks, called monitoring-burst (m-burst), which aims to initiate a graceful compromise between consumed monitoring resources and monitoring delay. Different from any previously reported solution, the proposed m-burst framework has a single monitoring node (MN) which launches optical bursts along a set of pre-defined close-loop routes, called monitoring cycles (m-cycles), to probe the links along the m-cycles. Bursts along different m-cycles are kept non-overlapping through any link of the network. By identifying the lost bursts due to single link failure events only, the MN can unambiguously localize the failed link in at least 3-connected networks. We will justify the feasibility and applicability of the proposed m-burst framework in the scenario of interest. To avoid possible collision among optical bursts launched by the MN, we define the problem of collision-free scheduling and formulate it into an integer linear program (ILP) in order to minimize the monitoring delay. Numerical results demonstrate the effectiveness of the proposed framework and the proposed solution.

  17. Cytochemical localization of catalase and several hydrogen peroxide-producing oxidases in the nucleoids and matrix of rat liver peroxisomes

    NARCIS (Netherlands)

    Veenhuis, M.; Wendelaar Bonga, S.E.

    1979-01-01

    The distribution of catalase, amino acid oxidase, α-hydroxy acid oxidase, urate oxidase and alcohol oxidase was studied cytochemically in rat hepatocytes. The presence of catalase was demonstrated with the conventional diaminobenzidine technique. Oxidase activities were visualized with methods based

  18. Does Twitter trigger bursts in signature collections?

    Directory of Open Access Journals (Sweden)

    Rui Yamaguchi

    Full Text Available INTRODUCTION: The quantification of social media impacts on societal and political events is a difficult undertaking. The Japanese Society of Oriental Medicine started a signature-collecting campaign to oppose a medical policy of the Government Revitalization Unit to exclude a traditional Japanese medicine, "Kampo," from the public insurance system. The signature count showed a series of aberrant bursts from November 26 to 29, 2009. In the same interval, the number of messages on Twitter including the keywords "Signature" and "Kampo," increased abruptly. Moreover, the number of messages on an Internet forum that discussed the policy and called for signatures showed a train of spikes. METHODS AND FINDINGS: In order to estimate the contributions of social media, we developed a statistical model with state-space modeling framework that distinguishes the contributions of multiple social media in time-series of collected public opinions. We applied the model to the time-series of signature counts of the campaign and quantified contributions of two social media, i.e., Twitter and an Internet forum, by the estimation. We found that a considerable portion (78% of the signatures was affected from either of the social media throughout the campaign and the Twitter effect (26% was smaller than the Forum effect (52% in total, although Twitter probably triggered the initial two bursts of signatures. Comparisons of the estimated profiles of the both effects suggested distinctions between the social media in terms of sustainable impact of messages or tweets. Twitter shows messages on various topics on a time-line; newer messages push out older ones. Twitter may diminish the impact of messages that are tweeted intermittently. CONCLUSIONS: The quantification of social media impacts is beneficial to better understand people's tendency and may promote developing strategies to engage public opinions effectively. Our proposed method is a promising tool to explore

  19. The immediate wound-induced oxidative burst of Saccharina latissima depends on light via photosynthetic electron transport.

    Science.gov (United States)

    McDowell, Ruth E; Amsler, Margaret O; Li, Qian; Lancaster, Jack R; Amsler, Charles D

    2015-06-01

    Reactive oxygen species (ROS) produced by an oxidative burst are an important component of the wound response in algae, vascular plants, and animals. In all taxa, ROS production is usually attributed solely to a defense-related enzyme like NADPH-oxidase (Nox). However, here we show that the initial, wound-induced oxidative burst of the kelp Saccharina latissima depends on light and photosynthetic electron transport. We measured oxygen evolution and ROS production at different light levels and in the presence of a photosynthetic inhibitor, and we used spin trapping and electron paramagnetic resonance as an orthogonal method. Using an in vivo chemical probe, we provide data suggesting that wound-induced ROS production in two distantly related and geographically isolated species of Antarctic macroalgae may be light dependent as well. We propose that electron transport chains are an important and as yet unaddressed component of the wound response, not just for photosynthetic organisms, but for animals via mitochondria as well. This component may have been obscured by the historic use of diphenylene iodonium, which inhibits not only Noxes but also photosynthetic and respiratory electron transport as well. Finally, we anticipate physiological and/or ecological consequences of the light dependence of macroalgal wound-induced ROS since pathogens and grazers do not disappear in the dark.

  20. The Apoplastic Oxidative Burst Peroxidase in Arabidopsis Is a Major Component of Pattern-Triggered Immunity[W][OA

    Science.gov (United States)

    Daudi, Arsalan; Cheng, Zhenyu; O’Brien, Jose A.; Mammarella, Nicole; Khan, Safina; Ausubel, Frederick M.; Bolwell, G. Paul

    2012-01-01

    In plants, reactive oxygen species (ROS) associated with the response to pathogen attack are generated by NADPH oxidases or apoplastic peroxidases. Antisense expression of a heterologous French bean (Phaseolus vulgaris) peroxidase (FBP1) cDNA in Arabidopsis thaliana was previously shown to diminish the expression of two Arabidopsis peroxidases (peroxidase 33 [PRX33] and PRX34), block the oxidative burst in response to a fungal elicitor, and cause enhanced susceptibility to a broad range of fungal and bacterial pathogens. Here we show that mature leaves of T-DNA insertion lines with diminished expression of PRX33 and PRX34 exhibit reduced ROS and callose deposition in response to microbe-associated molecular patterns (MAMPs), including the synthetic peptides Flg22 and Elf26 corresponding to bacterial flagellin and elongation factor Tu, respectively. PRX33 and PRX34 knockdown lines also exhibited diminished activation of Flg22-activated genes after Flg22 treatment. These MAMP-activated genes were also downregulated in unchallenged leaves of the peroxidase knockdown lines, suggesting that a low level of apoplastic ROS production may be required to preprime basal resistance. Finally, the PRX33 knockdown line is more susceptible to Pseudomonas syringae than wild-type plants. In aggregate, these data demonstrate that the peroxidase-dependent oxidative burst plays an important role in Arabidopsis basal resistance mediated by the recognition of MAMPs. PMID:22247251

  1. Francisella tularensis LVS evades killing by human neutrophils via inhibition of the respiratory burst and phagosome escape.

    Science.gov (United States)

    McCaffrey, Ramona L; Allen, Lee-Ann H

    2006-12-01

    Francisella tularensis is a Gram-negative bacterium and the causative agent of tularemia. Recent data indicate that F. tularensis replicates inside macrophages, but its fate in other cell types, including human neutrophils, is unclear. We now show that F. tularensis live vaccine strain (LVS), opsonized with normal human serum, was rapidly ingested by neutrophils but was not eliminated. Moreover, evasion of intracellular killing can be explained, in part, by disruption of the respiratory burst. As judged by luminol-enhanced chemiluminescence and nitroblue tetrazolium staining, neutrophils infected with live F. tularensis did not generate reactive oxygen species. Confocal microscopy demonstrated that NADPH oxidase assembly was disrupted, and LVS phagosomes did not acquire gp91/p22(phox) or p47/p67(phox). At the same time, F. tularensis also impaired neutrophil activation by heterologous stimuli such as phorbol esters and opsonized zymosan particles. Later in infection, LVS escaped the phagosome, and live organisms persisted in the neutrophil cytosol for at least 12 h. To our knowledge, our data are the first demonstration of a facultative intracellular pathogen, which disrupts the oxidative burst and escapes the phagosome to evade elimination inside neutrophils, and as such, our data define a novel mechanism of virulence.

  2. The Swift Burst Analyser I: BAT and XRT spectral and flux evolution of Gamma Ray Bursts

    CERN Document Server

    Evans, P A; Osborne, J P; O'Brien, P T; Page, K L; Markwardt, C B; Barthelmy, S D; Beardmore, A P; Burrows, D N; Pagani, C; Starling, R L C; Romano, P

    2010-01-01

    Context: Gamma Ray Burst models predict the broadband spectral evolution and the temporal evolution of the energy flux. In contrast, standard data analysis tools and data repositories provide count-rate data, or use single flux conversion factors for all of the data, neglecting spectral evolution. Aims: To produce Swift BAT and XRT light curves in flux units, where the spectral evolution is accounted for. Methods: We have developed software to use the hardness ratio information to track spectral evolution of GRBs, and thus to convert the count-rate light curves from the BAT and XRT instruments on Swift into accurate, evolution-aware flux light curves. Results: The Swift Burst Analyser website (http://www.swift.ac.uk/burst_analyser) contains BAT, XRT and combined BAT-XRT flux light curves in three energy regimes for all GRBs observed by the Swift satellite. These light curves are automatically built and updated when data become available, are presented in graphical and plain-text format, and are available for ...

  3. SGR J1550-5418 BURSTS DETECTED WITH THE FERMI GAMMA-RAY BURST MONITOR DURING ITS MOST PROLIFIC ACTIVITY

    Energy Technology Data Exchange (ETDEWEB)

    Van der Horst, A. J.; Finger, M. H. [Universities Space Research Association, NSSTC, Huntsville, AL 35805 (United States); Kouveliotou, C. [Space Science Office, VP62, NASA/Marshall Space Flight Center, Huntsville, AL 35812 (United States); Gorgone, N. M. [Connecticut College, New London, CT 06320 (United States); Kaneko, Y.; Goegues, E.; Lin, L. [Sabanc Latin-Small-Letter-Dotless-I University, Orhanl Latin-Small-Letter-Dotless-I -Tuzla, Istanbul 34956 (Turkey); Baring, M. G. [Department of Physics and Astronomy, Rice University, MS-108, P.O. Box 1892, Houston, TX 77251 (United States); Guiriec, S.; Bhat, P. N.; Chaplin, V. L.; Goldstein, A. [University of Alabama, Huntsville, CSPAR, Huntsville, AL 35805 (United States); Granot, J. [Racah Institute of Physics, Hebrew University, Jerusalem 91904 (Israel); Watts, A. L. [Astronomical Institute ' Anton Pannekoek' , University of Amsterdam, Postbus 94249, 1090 GE Amsterdam (Netherlands); Bissaldi, E.; Gruber, D. [Max Planck Institute for Extraterrestrial Physics, Giessenbachstrasse, Postfach 1312, 85748 Garching (Germany); Gehrels, N.; Harding, A. K. [NASA Goddard Space Flight Center, Greenbelt, MD 20771 (United States); Gibby, M. H.; Giles, M. M., E-mail: A.J.VanDerHorst@uva.nl [Jacobs Technology, Inc., Huntsville, AL (United States); and others

    2012-04-20

    We have performed detailed temporal and time-integrated spectral analysis of 286 bursts from SGR J1550-5418 detected with the Fermi Gamma-ray Burst Monitor (GBM) in 2009 January, resulting in the largest uniform sample of temporal and spectral properties of SGR J1550-5418 bursts. We have used the combination of broadband and high time-resolution data provided with GBM to perform statistical studies for the source properties. We determine the durations, emission times, duty cycles, and rise times for all bursts, and find that they are typical of SGR bursts. We explore various models in our spectral analysis, and conclude that the spectra of SGR J1550-5418 bursts in the 8-200 keV band are equally well described by optically thin thermal bremsstrahlung (OTTB), a power law (PL) with an exponential cutoff (Comptonized model), and two blackbody (BB) functions (BB+BB). In the spectral fits with the Comptonized model, we find a mean PL index of -0.92, close to the OTTB index of -1. We show that there is an anti-correlation between the Comptonized E{sub peak} and the burst fluence and average flux. For the BB+BB fits, we find that the fluences and emission areas of the two BB functions are correlated. The low-temperature BB has an emission area comparable to the neutron star surface area, independent of the temperature, while the high-temperature BB has a much smaller area and shows an anti-correlation between emission area and temperature. We compare the properties of these bursts with bursts observed from other SGR sources during extreme activations, and discuss the implications of our results in the context of magnetar burst models.

  4. Xenopus BTBD6 and its Drosophila homologue lute are required for neuronal development.

    Science.gov (United States)

    Bury, Frédéric J; Moers, Virginie; Yan, Jiekun; Souopgui, Jacob; Quan, Xiao-Jiang; De Geest, Natalie; Kricha, Sadia; Hassan, Bassem A; Bellefroid, Eric J

    2008-11-01

    BBP proteins constitute a subclass of CUL3 interacting BTB proteins whose in vivo function remains unknown. Here, we show that the Xenopus BBP gene BTBD6 and the single Drosophila homologue of mammalian BBP genes lute are strongly expressed in the developing nervous system. In Xenopus, BTBD6 expression responds positively to proneural and negatively to neurogenic gene overexpression. Knockdown of BTBD6 in Xenopus or loss of Drosophila lute result in embryos with strong defects in late neuronal markers and strongly reduced and disorganized axons while early neural development is unaffected. XBTBD6 knockdown in Xenopus also affects muscle development. Together, these data indicate that BTBD6/lute is required for proper embryogenesis and plays an essential evolutionary conserved role during neuronal development.

  5. Synthesis and Characterization of a New Five and Six Membered Selenoheterocyclic Compounds Homologues of Ebselen

    Directory of Open Access Journals (Sweden)

    Mouslim Messali

    2011-01-01

    Full Text Available The discovery of the antioxidant activity of selenoenzyme glutathione peroxidase (GPx has attracted growing attention in the biochemistry of selenium. Among molecules which mimic the structure of the active site of the enzyme, N-phenyl-1,2-benzisoselenazolin-3-one 1, Ebselen, exhibited useful anti-inflammatory properties. It has been extensively investigated and has undergone clinical trials as an anti-inflammatory agent. Unfortunately, Ebselen exhibits relatively poor catalytic activity, prompting attempts to design more efficacious GPx mimetics that would retain his low toxicity while manifesting improved catalytic properties. In this context, novel 1,2-benzoselenazine and 1,2-benzoselenazols, which are five and six membered homologues of Ebselen were synthesized and characterized. One structure has been proven by single crystal X-ray crystallography.

  6. Molecular investigations of pathogenesis-related Bet v 1 homologues in Passiflora (Passifloraceae).

    Science.gov (United States)

    Finkler, Carla; Giacomet, Carolina; Muschner, Valéria C; Salzano, Francisco M; Freitas, Loreta B

    2005-07-01

    The major birch pollen allergen, Bet v 1, responsible for allergic reactions in many areas of the world, is homologous to a large number of pathogenesis-related proteins (PRs), identified as PR10. As part of a long-range investigation of these types of proteins and of evolution in Passiflora, DNA sequences from eight Bet v 1 homologue isoforms were obtained from five species of this genus in Brazil, and their sequences compared among themselves and with 30 others from 8 different species, classified in different taxonomic units. The objective was a first characterization of these PRs in wild passionflowers, and their use for evolutionary and applied investigations. High interspecific, but low intraspecific variability was observed, as expected from multigenic families subjected to concerted evolution. The relationships obtained both within Passiflora and between it and seven other genera probably best reflect functional similarities than evolutionary history.

  7. Homologue Structure of the SLAC1 Anion Channel for Closing Stomata in Leaves

    Energy Technology Data Exchange (ETDEWEB)

    Y Chen; L Hu; M Punta; R Bruni; B Hillerich; B Kloss; B Rost; J Love; S Siegelbaum; W Hendrickson

    2011-12-31

    The plant SLAC1 anion channel controls turgor pressure in the aperture-defining guard cells of plant stomata, thereby regulating the exchange of water vapour and photosynthetic gases in response to environmental signals such as drought or high levels of carbon dioxide. Here we determine the crystal structure of a bacterial homologue (Haemophilus influenzae) of SLAC1 at 1.20 {angstrom} resolution, and use structure-inspired mutagenesis to analyse the conductance properties of SLAC1 channels. SLAC1 is a symmetrical trimer composed from quasi-symmetrical subunits, each having ten transmembrane helices arranged from helical hairpin pairs to form a central five-helix transmembrane pore that is gated by an extremely conserved phenylalanine residue. Conformational features indicate a mechanism for control of gating by kinase activation, and electrostatic features of the pore coupled with electrophysiological characteristics indicate that selectivity among different anions is largely a function of the energetic cost of ion dehydration.

  8. A Salmonella Typhi homologue of bacteriophage muramidases controls typhoid toxin secretion.

    Science.gov (United States)

    Hodak, Hélène; Galán, Jorge E

    2013-01-01

    Unlike other Salmonella, which can infect a broad range of hosts causing self-limiting infection, Salmonella Typhi is an exclusively human pathogen that causes typhoid fever, a life-threatening systemic disease. Typhoid toxin is a unique virulence factor of Salmonella Typhi, which is expressed when the bacteria are within mammalian cells. Here, we report that an N-acetyl-β-D-muramidase similar to phage endolysins encoded within the same pathogenicity islet as the toxin is required for typhoid toxin secretion. Genetic and functional analysis of TtsA revealed unique amino acids at its predicted peptidoglycan-binding domain that are essential for protein secretion and that distinguishes this protein from other homologues. We propose that TtsA defines a new protein secretion mechanism recently evolved from the machine that mediates phage release.

  9. Iron uptake by melanoma cells from the soluble form of the transferrin homologue, melanotransferrin.

    Science.gov (United States)

    Food, Michael R; Des Richardson, R

    2002-01-01

    Melanotransferrin (MTf) is a membrane-bound transferrin (Tf) homologue that can also exist in a soluble form (sMTf). Considering the high homology of MTf to Tf, it is possible to suggest that sMTf could bind to the high affinity transferrin receptor 1 (TfR1) or lower affinity TfR2. We have used sMTf labelled with 59Fe to examine its ability to donate Fe to cells. Our experiments demonstrate that sMTf is far less effective than Tf at donating Fe to cells and this does not occur via specific receptors. Indeed, the uptake of sMTf by cells occurred via a non-specific process (e.g. adsorptive pinocytosis).

  10. Regulation of NADPH oxidase activity in phagocytes: relationship between FAD/NADPH binding and oxidase complex assembly.

    Science.gov (United States)

    Debeurme, Franck; Picciocchi, Antoine; Dagher, Marie-Claire; Grunwald, Didier; Beaumel, Sylvain; Fieschi, Franck; Stasia, Marie-José

    2010-10-22

    The X(+)-linked chronic granulomatous disease (X(+)-CGD) variants are natural mutants characterized by defective NADPH oxidase activity but with normal Nox2 expression. According to the three-dimensional model of the cytosolic Nox2 domain, most of the X(+)-CGD mutations are located in/or close to the FAD/NADPH binding regions. A structure/function study of this domain was conducted in X(+)-CGD PLB-985 cells exactly mimicking 10 human variants: T341K, C369R, G408E, G408R, P415H, P415L, Δ507QKT509-HIWAinsert, C537R, L546P, and E568K. Diaphorase activity is defective in all these mutants. NADPH oxidase assembly is normal for P415H/P415L and T341K mutants where mutation occurs in the consensus sequences of NADPH- and FAD-binding sites, respectively. This is in accordance with their buried position in the three-dimensional model of the cytosolic Nox2 domain. FAD incorporation is abolished only in the T341K mutant explaining its absence of diaphorase activity. This demonstrates that NADPH oxidase assembly can occur without FAD incorporation. In addition, a defect of NADPH binding is a plausible explanation for the diaphorase activity inhibition in the P415H, P415L, and C537R mutants. In contrast, Cys-369, Gly-408, Leu-546, and Glu-568 are essential for NADPH oxidase complex assembly. However, according to their position in the three-dimensional model of the cytosolic domain of Nox2, only Cys-369 could be in direct contact with cytosolic factors during oxidase assembly. In addition, the defect in oxidase assembly observed in the C369R, G408E, G408R, and E568K mutants correlates with the lack of FAD incorporation. Thus, the NADPH oxidase assembly process and FAD incorporation are closely related events essential for the diaphorase activity of Nox2.

  11. Conservation of Oxidative Protein Stabilization in an Insect Homologue of Parkinsonism-Associated Protein DJ-1

    Energy Technology Data Exchange (ETDEWEB)

    Lin, Jiusheng; Prahlad, Janani; Wilson, Mark A. (UNL)

    2012-08-21

    DJ-1 is a conserved, disease-associated protein that protects against oxidative stress and mitochondrial damage in multiple organisms. Human DJ-1 contains a functionally essential cysteine residue (Cys106) whose oxidation is important for regulating protein function by an unknown mechanism. This residue is well-conserved in other DJ-1 homologues, including two (DJ-1{alpha} and DJ-1{beta}) in Drosophila melanogaster. Because D. melanogaster is a powerful model system for studying DJ-1 function, we have determined the crystal structure and impact of cysteine oxidation on Drosophila DJ-1{beta}. The structure of D. melanogaster DJ-1{beta} is similar to that of human DJ-1, although two important residues in the human protein, Met26 and His126, are not conserved in DJ-1{beta}. His126 in human DJ-1 is substituted with a tyrosine in DJ-1{beta}, and this residue is not able to compose a putative catalytic dyad with Cys106 that was proposed to be important in the human protein. The reactive cysteine in DJ-1 is oxidized readily to the cysteine-sulfinic acid in both flies and humans, and this may regulate the cytoprotective function of the protein. We show that the oxidation of this conserved cysteine residue to its sulfinate form (Cys-SO{sub 2{sup -}}) results in considerable thermal stabilization of both Drosophila DJ-1{beta} and human DJ-1. Therefore, protein stabilization is one potential mechanism by which cysteine oxidation may regulate DJ-1 function in vivo. More generally, most close DJ-1 homologues are likely stabilized by cysteine-sulfinic acid formation but destabilized by further oxidation, suggesting that they are biphasically regulated by oxidative modification.

  12. The RuvA homologues from Mycoplasma genitalium and Mycoplasma pneumoniae exhibit unique functional characteristics.

    Directory of Open Access Journals (Sweden)

    Marcel Sluijter

    Full Text Available The DNA recombination and repair machineries of Mycoplasma genitalium and Mycoplasma pneumoniae differ considerably from those of gram-positive and gram-negative bacteria. Most notably, M. pneumoniae is unable to express a functional RecU Holliday junction (HJ resolvase. In addition, the RuvB homologues from both M. pneumoniae and M. genitalium only exhibit DNA helicase activity but not HJ branch migration activity in vitro. To identify a putative role of the RuvA homologues of these mycoplasmas in DNA recombination, both proteins (RuvA(Mpn and RuvA(Mge, respectively were studied for their ability to bind DNA and to interact with RuvB and RecU. In spite of a high level of sequence conservation between RuvA(Mpn and RuvA(Mge (68.8% identity, substantial differences were found between these proteins in their activities. First, RuvA(Mge was found to preferentially bind to HJs, whereas RuvA(Mpn displayed similar affinities for both HJs and single-stranded DNA. Second, while RuvA(Mpn is able to form two distinct complexes with HJs, RuvA(Mge only produced a single HJ complex. Third, RuvA(Mge stimulated the DNA helicase and ATPase activities of RuvB(Mge, whereas RuvA(Mpn did not augment RuvB activity. Finally, while both RuvA(Mge and RecU(Mge efficiently bind to HJs, they did not compete with each other for HJ binding, but formed stable complexes with HJs over a wide protein concentration range. This interaction, however, resulted in inhibition of the HJ resolution activity of RecU(Mge.

  13. The RuvA homologues from Mycoplasma genitalium and Mycoplasma pneumoniae exhibit unique functional characteristics.

    Science.gov (United States)

    Sluijter, Marcel; Estevão, Silvia; Hoogenboezem, Theo; Hartwig, Nico G; van Rossum, Annemarie M C; Vink, Cornelis

    2012-01-01

    The DNA recombination and repair machineries of Mycoplasma genitalium and Mycoplasma pneumoniae differ considerably from those of gram-positive and gram-negative bacteria. Most notably, M. pneumoniae is unable to express a functional RecU Holliday junction (HJ) resolvase. In addition, the RuvB homologues from both M. pneumoniae and M. genitalium only exhibit DNA helicase activity but not HJ branch migration activity in vitro. To identify a putative role of the RuvA homologues of these mycoplasmas in DNA recombination, both proteins (RuvA(Mpn) and RuvA(Mge), respectively) were studied for their ability to bind DNA and to interact with RuvB and RecU. In spite of a high level of sequence conservation between RuvA(Mpn) and RuvA(Mge) (68.8% identity), substantial differences were found between these proteins in their activities. First, RuvA(Mge) was found to preferentially bind to HJs, whereas RuvA(Mpn) displayed similar affinities for both HJs and single-stranded DNA. Second, while RuvA(Mpn) is able to form two distinct complexes with HJs, RuvA(Mge) only produced a single HJ complex. Third, RuvA(Mge) stimulated the DNA helicase and ATPase activities of RuvB(Mge), whereas RuvA(Mpn) did not augment RuvB activity. Finally, while both RuvA(Mge) and RecU(Mge) efficiently bind to HJs, they did not compete with each other for HJ binding, but formed stable complexes with HJs over a wide protein concentration range. This interaction, however, resulted in inhibition of the HJ resolution activity of RecU(Mge).

  14. Isolation and characterization of AtMLH1, a MutL homologue from Arabidopsis thaliana.

    Science.gov (United States)

    Jean, M; Pelletier, J; Hilpert, M; Belzile, F; Kunze, R

    1999-12-01

    DNA mismatch repair systems play an essential role in the maintenance of genetic information in living organisms and are also implicated in genetic recombination and genome stability. Using degenerate primers, we have cloned the first plant homologue of the E. coli MutL gene, which we have called AtMLH1 for Arabidopsis thaliana MutL-homologue 1. AtMLH1 is present as a single-copy gene in the Arabidopsis genome and is located on the top arm of chromosome 4. Sequence analysis revealed that the product of this gene shows extensive sequence homology with other eukaryotic MLH1 proteins. As mlh1-deficient lines would be useful for studying the biological function of this gene, several populations that had been mutagenized using T-DNA and transposon insertions were screened to identify such mutants. One line that carries a T-DNA insertion in the promoter region of the AtMLH1 gene was isolated. Surprisingly, although the insertion occurred only approximately 80 bp upstream of the putative transcription start site, Northern analyses revealed very low but similar amounts of AtMLH1 transcript in both the wild type and the T-DNA insertion lines. RT-PCR analyses suggest, however, that transcription is initiated further upstream in the insertion line and that the T-DNA may supply this novel initiation site. Finally, no increase in microsatellite instability - a phenotype often associated with mutations in mismatch repair genes - was observed in plants homozygous for this insertion.

  15. Some properties of active and latent catechol oxidase of mushroom

    Directory of Open Access Journals (Sweden)

    Janusz Czapski

    2013-12-01

    Full Text Available Latent form of mushroom catechol oxidase was activated by O,1% sodium dodecyl sulfate (SDS. Catalytic power of the latent form, calculated from the kinetic parameters was 1,8 times higher than that of active one. Salicyl hydroxamic acid (SHAM appeared as a powerful inhibitor for both active and latent forms of catechol oxidase. However, in the range of 150-250 μM SHAM the inhibitory effect for active catechol oxidase was significantly higher than that for the latent one. Non-competitive and irreversible characteristics of inhibition of latent and active catechol oxidase was calculated from kinetic data. Electrophoretic analysis followed by scanning of the gels was used. The spots' absorbance was determined from a computer image of the isoenzyme band patterns. It allowed us to estimate gels quantitatively. Presence of one additional clearly defined slow moving isoform of SDS-activated catechol oxidase, differed in the respect of 3 bands for the active and 4 bands for the total.

  16. Calcium transport in vesicles energized by cytochrome oxidase

    Energy Technology Data Exchange (ETDEWEB)

    Rosier, Randy N. [Univ. of Rochester, NY (United States)

    1979-01-01

    Experiments on the reconstitution of cytochrome oxidase into phospholipid vesicles were carried out using techniques of selectivity energizing the suspensions with ascorbate and cytochrome c or ascorbate, PMS, and internally trapped cytochrome c. It was found that the K+ selective ionophore valinomycin stimulated the rate of respiration of cytochrome oxidase vesicles regardless of the direction of the K+ flux across the vesicle membranes. The stimulation occurred in the presence of protonophoric uncouplers and in the complete absence of potassium or in detergent-lysed suspensions. Gramicidin had similar effects and it was determined that the ionophores acted by specific interaction with cytochrome oxidase rather than by the previously assumed collapse of membrane potentials. When hydrophobic proteins and appropriate coupling factors were incorporated into the cytochrome oxidase, vesicles phosphorylation of ADP could be coupled to the oxidation reaction of cytochrome oxidase. Relatively low P:O, representing poor coupling of the system, were problematical and precluded measurements of protonmotive force. However the system was used to study ion translocation.

  17. Cation binding site of cytochrome c oxidase: progress report.

    Science.gov (United States)

    Vygodina, Tatiana V; Kirichenko, Anna; Konstantinov, Alexander A

    2014-07-01

    Cytochrome c oxidase from bovine heart binds Ca(2+) reversibly at a specific Cation Binding Site located near the outer face of the mitochondrial membrane. Ca(2+) shifts the absorption spectrum of heme a, which allowed earlier the determination of the kinetic and equilibrium characteristics of the binding, and, as shown recently, the binding of calcium to the site inhibits cytochrome oxidase activity at low turnover rates of the enzyme [Vygodina, Т., Kirichenko, A., Konstantinov, A.A (2013). Direct Regulation of Cytochrome c Oxidase by Calcium Ions. PloS ONE 8, e74436]. This paper summarizes further progress in the studies of the Cation Binding Site in this group presenting the results to be reported at 18th EBEC Meeting in Lisbon, 2014. The paper revises specificity of the bovine oxidase Cation Binding Site for different cations, describes dependence of the Ca(2+)-induced inhibition on turnover rate of the enzyme and reports very high affinity binding of calcium with the "slow" form of cytochrome oxidase. This article is part of a Special Issue entitled: 18th European Bioenergetic Conference. Guest Editors: Manuela Pereira and Miguel Teixeira.

  18. Crystal Structure of Alcohol Oxidase from Pichia pastoris.

    Directory of Open Access Journals (Sweden)

    Christian Koch

    Full Text Available FAD-dependent alcohol oxidases (AOX are key enzymes of methylotrophic organisms that can utilize lower primary alcohols as sole source of carbon and energy. Here we report the crystal structure analysis of the methanol oxidase AOX1 from Pichia pastoris. The crystallographic phase problem was solved by means of Molecular Replacement in combination with initial structure rebuilding using Rosetta model completion and relaxation against an averaged electron density map. The subunit arrangement of the homo-octameric AOX1 differs from that of octameric vanillyl alcohol oxidase and other dimeric or tetrameric alcohol oxidases, due to the insertion of two large protruding loop regions and an additional C-terminal extension in AOX1. In comparison to other alcohol oxidases, the active site cavity of AOX1 is significantly reduced in size, which could explain the observed preference for methanol as substrate. All AOX1 subunits of the structure reported here harbor a modified flavin adenine dinucleotide, which contains an arabityl chain instead of a ribityl chain attached to the isoalloxazine ring.

  19. Accelerating Science with the NERSC Burst Buffer Early User Program

    Energy Technology Data Exchange (ETDEWEB)

    Bhimji, Wahid [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Bard, Debbie [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Romanus, Melissa [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Rutgers Univ., New Brunswick, NJ (United States); Paul, David [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Ovsyannikov, Andrey [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Friesen, Brian [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Bryson, Matt [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Correa, Joaquin [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Lockwood, Glenn K. [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Tsulaia, Vakho [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Byna, Suren [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Farrell, Steve [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Gursoy, Doga [Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS); Daley, Chris [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Beckner, Vince [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Van Straalen, Brian [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Trebotich, David [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Tull, Craig [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Weber, Gunther H. [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Wright, Nicholas J. [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Antypas, Katie [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Prabhat, none [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

    2016-01-01

    NVRAM-based Burst Buffers are an important part of the emerging HPC storage landscape. The National Energy Research Scientific Computing Center (NERSC) at Lawrence Berkeley National Laboratory recently installed one of the first Burst Buffer systems as part of its new Cori supercomputer, collaborating with Cray on the development of the DataWarp software. NERSC has a diverse user base comprised of over 6500 users in 700 different projects spanning a wide variety of scientific computing applications. The use-cases of the Burst Buffer at NERSC are therefore also considerable and diverse. We describe here performance measurements and lessons learned from the Burst Buffer Early User Program at NERSC, which selected a number of research projects to gain early access to the Burst Buffer and exercise its capability to enable new scientific advancements. To the best of our knowledge this is the first time a Burst Buffer has been stressed at scale by diverse, real user workloads and therefore these lessons will be of considerable benefit to shaping the developing use of Burst Buffers at HPC centers.

  20. Fine structures of type III radio bursts observed by LOFAR

    Science.gov (United States)

    Magdalenic, Jasmina; Marque, Christophe; Fallows, Richard; Mann, Gottfried; Vocks, Christian

    2017-04-01

    On August 25, 2014, NOAA AR 2146 produced the M2.0 class flare (peaked at 15:11 UT). The flare was associated with a coronal dimming, a EUV wave, a halo CME and a radio event observed by LOFAR (the LOw-Frequency Array). The radio event consisted of a type II, type III and type IV radio emissions. In this study, we focus on LOFAR observations of the type III bursts, generally considered to be radio signatures of fast electron beams propagating along open or quasi open field lines. The group of type III bursts was, as usually, observed during the impulsive phase of the flare. At first hand, type III bursts show no peculiarity, but the high frequency/time resolution LOFAR observations reveal that only few of these type III bursts have a smooth emission profile. The majority of bursts is strongly fragmented. Some show a structuring similar to type IIIb bursts, but on a smaller frequency scale, and others show a non-organized patchy structure which gives indication on the possibly related turbulence processes. Although fine structures of type III bursts were already reported, the wealth of fine structures, and the fragmentation of the radio emission observed in this August 25 event is unprecedented. We show that these LOFAR observations bring completely new insight and pose a new challenge for the physics of the acceleration of electron beams and associated emission processes.

  1. Large Aerial Bursts: An Important Class of Terrestrial Accretionary Events

    Science.gov (United States)

    Wasson, John T.

    2003-01-01

    Large aerial bursts similar to the 1908 Tunguska bolide but much larger in magnitude have surely been responsible for many catastrophic events in the history of the Earth. Because aerial bursts produce shallow (or even negligible) craters, their existence is difficult to document in the geological record. Even aerial bursts as small as Tunguska deposit enough energy to melt ~1mm of dry soil. Silica-rich glass formed in such melts has the potential to survive in the soil for many Ma, thus a potential indicator of large aerial bursts is glass that was formed as thick regions within silicate melt sheets. The layered tektites from Southeast Asia and the Libyan desert glass may have formed by a combination of sedimentation and downslope flow of silicate melt heated by radiation from large aerial bursts. The alternative, formation of layered tektites as crater ejecta, cannot account for observations such as uniformly high 10Be contents, the orientation of the magnetic remanence field, and the absence of splash-form (e.g., teardrop or dumbbell) tektites in regions where layered tektites are common. The largest asteroids or comets make craters no matter what their strength. Recent reviews suggest that, for events in the energy range up to 1019-1020 J (about two orders of magnitude larger than the Meteor Crater impact), aerial bursts are more likely than cratering events, and the layered tektites of Southeast Asia imply the existence of aerial bursts one to two orders of magnitude larger still.

  2. Behaviorally relevant burst coding in primary sensory neurons.

    Science.gov (United States)

    Sabourin, Patrick; Pollack, Gerald S

    2009-08-01

    Bursts of action potentials in sensory interneurons are believed to signal the occurrence of particularly salient stimulus features. Previous work showed that bursts in an identified, ultrasound-tuned interneuron (AN2) of the cricket Teleogryllus oceanicus code for conspicuous increases in amplitude of an ultrasound stimulus, resulting in behavioral responses that are interpreted as avoidance of echolocating bats. We show that the primary sensory neurons that inform AN2 about high-frequency acoustic stimuli also produce bursts. As is the case for AN2, bursts in sensory neurons perform better as feature detectors than isolated, nonburst, spikes. Bursting is temporally correlated between sensory neurons, suggesting that on occurrence of a salient stimulus feature, AN2 will receive strong synaptic input in the form of coincident bursts, from several sensory neurons, and that this might result in bursting in AN2. Our results show that an important feature of the temporal structure of interneuron spike trains can be established at the earliest possible level of sensory processing, i.e., that of the primary sensory neuron.

  3. Gamma Ray Bursts and the Birth of Black Holes

    Science.gov (United States)

    Gehrels, Neil

    2009-01-01

    Black holes have been predicted since the 1940's from solutions of Einstein's general relativity field equation. There is strong evidence of their existence from astronomical observations, but their origin has remained an open question of great interest. Gamma-ray bursts may the clue. They are powerful explosions, visible to high redshift, and appear to be the birth cries of black holes. The Swift and Fermi missions are two powerful NASA observatories currently in orbit that are discovering how gamma-ray bursts work. Evidence is building that the long and short duration subcategories of GRBs have very different origins: massive star core collapse to a black hole for long bursts and binary neutron star coalescence to a black hole for short bursts. The similarity to Type II and Ia supernovae originating from young and old stellar progenitors is striking. Bursts are tremendously luminous and are providing a new tool to study the high redshift universe. One Swift burst at z=8.3 is the most distant object known in the universe. The talk will present the latest gamma-ray burst results from Swift and Fermi and will highlight what they are teaching us about black holes and jet outflows.

  4. Large aerial bursts: an important class of terrestrial accretionary events.

    Science.gov (United States)

    Wasson, John T

    2003-01-01

    Large aerial bursts similar to the 1908 Tunguska bolide but much larger in magnitude have surely been responsible for many catastrophic events in the history of the Earth. Because aerial bursts produce shallow (or even negligible) craters, their existence is difficult to document in the geological record. Even aerial bursts as small as Tunguska deposit enough energy to melt approximately 1mm of dry soil. Silica-rich glass formed in such melts has the potential to survive in the soil for many Ma, thus a potential indicator of large aerial bursts is glass that was formed as thick regions within silicate melt sheets. The layered tektites from Southeast Asia and the Libyan desert glass may have formed by a combination of sedimentation and downslope flow of silicate melt heated by radiation from large aerial bursts. The alternative, formation of layered tektites as crater ejecta, cannot account for observations such as uniformly high 10Be contents, the orientation of the magnetic remanence field, and the absence of splash-form (e.g., teardrop or dumbbell) tektites in regions where layered tektites are common. The largest asteroids or comets make craters no matter what their strength. Recent reviews suggest that, for events in the energy range up to 10(19)-10(20) J (about two orders of magnitude larger than the Meteor Crater impact), aerial bursts are more likely than cratering events, and the layered tektites of Southeast Asia imply the existence of aerial bursts one to two orders of magnitude larger still.

  5. Short Gamma-Ray Bursts with Extended Emission

    CERN Document Server

    Norris, J P; Bonnell, Jerry T.; Norris, Jay P.

    2006-01-01

    The recent association of several short gamma-ray bursts (GRBs) with early type galaxies with low star formation rate demonstrates that short bursts arise from a different progenitor mechanism than long bursts. However, since the duration distributions of the two classes overlap, membership is not always easily established. The picture is complicated by the occasional presence of softer, extended emission lasting tens of seconds after the initial spike-like emission. We show that the fundamental defining characteristic of the short burst class is that the initial spike exhibits negligible spectral evolution at energies above ~ 25 keV. This behavior is nearly ubiquitous for the 260 bursts with T90 < 2 s, where the BATSE TTE data completely included the initial spike. The same signature obtains for one HETE-2 and six Swift/BAT short bursts. Analysis of a small sample of "short" BATSE bursts with the most intense extended emission shows that the same lack of evolution on the pulse timescale obtains for the ex...

  6. Radio fiber bursts and fast magnetoacoustic wave trains

    CERN Document Server

    Karlický, M; Jelínek, P

    2012-01-01

    We present a model for dm-fiber bursts that is based on assuming fast sausage magnetoacoustic wave trains that propagate along a dense vertical filament or current sheet. Eight groups of dm-fiber bursts that were observed during solar flares were selected and analyzed by the wavelet analysis method. To model these fiber bursts we built a semi-empirical model. We also did magnetohydrodynamic simulations of a propagation of the magnetoacoustic wave train in a vertical and gravitationally stratified current sheet. In the wavelet spectra of the fiber bursts computed at different radio frequencies we found the wavelet tadpoles, whose head maxima have the same frequency drift as the drift of fiber bursts. It indicates that the drift of these fiber bursts can be explained by the propagating fast sausage magnetoacoustic wave train. Using new semi-empirical and magnetohydrodynamic models with a simple radio emission model we generated the artificial radio spectra of the fiber bursts, which are similar to the observed ...

  7. Unusual Solar Radio Burst Observed at Decameter Wavelengths

    Science.gov (United States)

    Melnik, V. N.; Brazhenko, A. I.; Konovalenko, A. A.; Rucker, H. O.; Frantsuzenko, A. V.; Dorovskyy, V. V.; Panchenko, M.; Stanislavskyy, A. A.

    2014-01-01

    An unusual solar burst was observed simultaneously by two decameter radio telescopes UTR-2 (Kharkov, Ukraine) and URAN-2 (Poltava, Ukraine) on 3 June 2011 in the frequency range of 16 - 28 MHz. The observed radio burst had some unusual properties, which are not typical for the other types of solar radio bursts. Its frequency drift rate was positive (about 500 kHz s-1) at frequencies higher than 22 MHz and negative (100 kHz s-1) at lower frequencies. The full duration of this event varied from 50 s up to 80 s, depending on the frequency. The maximum radio flux of the unusual burst reached ≈103 s.f.u. and its polarization did not exceed 10 %. This burst had a fine frequency-time structure of unusual appearance. It consisted of stripes with the frequency bandwidth 300 - 400 kHz. We consider that several accompanied radio and optical events observed by SOHO and STEREO spacecraft were possibly associated with the reported radio burst. A model that may interpret the observed unusual solar radio burst is proposed.

  8. On the Galactic Distribution of Gamma Ray Bursts

    CERN Document Server

    Lewin, W H G; Lewin, Robert E. Rutledge \\& Walter H.G.

    1993-01-01

    Quashnock and Lamb (1993) defined a sub-sample of Gamma-ray Bursts (GRBs) from the publicly available BATSE database which shows clumping toward the galactic plane, and concluded that all GRBs are galactic in origin. The selection of these bursts (duplicated in this work in Sample 1) involved a peak countrate (in counts s-1) uncorrected for aspect. We assert that the peak flux of a burst is physically more meaningful than peak count-rate. Using, as limits, the corresponding peak fluxes (in photons cm-2 s-1) for the bursts in the QL sample, we find an additional 24 bursts, which we include in a new sample (Sample 2). We find that the significance of anisotropy in Sample 2 is much less than that of Sample 1, which does not support QL's interpretation of the anisotropies as being due to a galactic population. To make meaningful statistical statements regarding isotropy, burst samples must have peak fluxes above a minimum flux, set by the requirement that a burst be detectable from any direction (above the horizo...

  9. Isolation of Crb1, a mouse homologue of Drosophila crumbs, and analysis of its expression pattern in eye and brain.

    NARCIS (Netherlands)

    Hollander, A.I. den; Ghiani, M.; Kok, Y.J.M. de; Wijnholds, J.; Ballabio, A.; Cremers, F.P.M.; Broccoli, V.

    2002-01-01

    Mutations in the human Crumbs homologue 1 (CRB1) gene cause severe retinal dystrophies. CRB1 is homologous to Drosophila Crumbs, a protein essential for establishing and maintaining epithelial polarity. We have isolated the mouse orthologue, Crb1, and analyzed its expression pattern in embryonic and

  10. Predominant recognition of species-specific determinants of the GroES homologues from Mycobacterium leprae and M. tuberculosis

    NARCIS (Netherlands)

    Chua-Intra, B.; Ivanyi, J.; Hills, A.; Thole, J.; Moreno, C.; Vordermeier, H.M.

    1998-01-01

    The Mycobacterium leprae and M. tuberculosis 10000 MW heat-shock protein homologues of GroES have previously been identified as major immunogens for human T cells. We used synthetic peptides to characterize the determinants recognized by murine T cells. The findings suggest that, despite 90% sequenc

  11. GTP analogue inhibits polymerization and GTPase activity of the bacterial protein FtsZ without affecting its eukaryotic homologue tubulin.

    NARCIS (Netherlands)

    Läppchen, T.; Hartog, A.F.; Pinas, V.; Koomen, G.J.; den Blaauwen, T.

    2005-01-01

    The prokaryotic tubulin homologue FtsZ plays a key role in bacterial cell division. Selective inhibitors of the GTP-dependent polymerization of FtsZ are expected to result in a new class of antibacterial agents. One of the challenges is to identify compounds which do not affect the function of tubul

  12. 4-Oxalocrotonate tautomerase, its homologue YwhB, and active vinylpyruvate hydratase : Synthesis and evaluation of 2-fluoro substrate analogues

    NARCIS (Netherlands)

    Johnson, William H; Wang, Susan C; Stanley, Thanuja M; Czerwinski, Robert M; Almrud, Jeffrey J; Poelarends, Gerrit J; Murzin, Alexey G; Whitman, Christian P

    2004-01-01

    A series of 2-fluoro-4-alkene and 2-fluoro-4-alkyne substrate analogues were synthesized and examined as potential inhibitors of three enzymes: 4-oxalocrotonate tautomerase (4-OT) and vinylpyruvate hydratase (VPH) from the catechol meta-fission pathway and a closely related 4-OT homologue found in B

  13. Secretory pathway antagonism by calicivirus homologues of Norwalk virus nonstructural protein p22 is restricted to noroviruses

    Directory of Open Access Journals (Sweden)

    Sharp Tyler M

    2012-09-01

    Full Text Available Abstract Background Our previous report that the Norwalk virus nonstructural protein p22 is an antagonist of the cellular secretory pathway suggests a new aspect of norovirus/host interaction. To explore conservation of function of this highly divergent calicivirus protein, we examined the effects of p22 homologues from four human and two murine noroviruses, and feline calicivirus on the secretory pathway. Findings All human noroviruses examined induced Golgi disruption and inhibited protein secretion, with the genogroup II.4 Houston virus being the most potent antagonist. Genogroup II.6 viruses have a conserved mutation in the mimic of an Endoplasmic Reticulum export signal (MERES motif that is highly conserved in human norovirus homologues of p22 and is critical for secretory pathway antagonism, and these viruses had reduced levels of Golgi disruption and inhibition of protein secretion. p22 homologues from both persistent and nonpersistent strains of murine norovirus induced Golgi disruption, but only mildly inhibited cellular protein secretion. Feline calicivirus p30 did not induce Golgi disruption or inhibit cellular protein secretion. Conclusions These differences confirm a norovirus-specific effect on host cell secretory pathway antagonism by homologues of p22, which may affect viral replication and/or cellular pathogenesis.

  14. Secretory pathway antagonism by calicivirus homologues of Norwalk virus nonstructural protein p22 is restricted to noroviruses.

    Science.gov (United States)

    Sharp, Tyler M; Crawford, Sue E; Ajami, Nadim J; Neill, Frederick H; Atmar, Robert L; Katayama, Kazuhiko; Utama, Budi; Estes, Mary K

    2012-09-03

    Our previous report that the Norwalk virus nonstructural protein p22 is an antagonist of the cellular secretory pathway suggests a new aspect of norovirus/host interaction. To explore conservation of function of this highly divergent calicivirus protein, we examined the effects of p22 homologues from four human and two murine noroviruses, and feline calicivirus on the secretory pathway. All human noroviruses examined induced Golgi disruption and inhibited protein secretion, with the genogroup II.4 Houston virus being the most potent antagonist. Genogroup II.6 viruses have a conserved mutation in the mimic of an Endoplasmic Reticulum export signal (MERES) motif that is highly conserved in human norovirus homologues of p22 and is critical for secretory pathway antagonism, and these viruses had reduced levels of Golgi disruption and inhibition of protein secretion. p22 homologues from both persistent and nonpersistent strains of murine norovirus induced Golgi disruption, but only mildly inhibited cellular protein secretion. Feline calicivirus p30 did not induce Golgi disruption or inhibit cellular protein secretion. These differences confirm a norovirus-specific effect on host cell secretory pathway antagonism by homologues of p22, which may affect viral replication and/or cellular pathogenesis.

  15. 4-Oxalocrotonate tautomerase, its homologue YwhB, and active vinylpyruvate hydratase : Synthesis and evaluation of 2-fluoro substrate analogues

    NARCIS (Netherlands)

    Johnson, William H; Wang, Susan C; Stanley, Thanuja M; Czerwinski, Robert M; Almrud, Jeffrey J; Poelarends, Gerrit J; Murzin, Alexey G; Whitman, Christian P

    2004-01-01

    A series of 2-fluoro-4-alkene and 2-fluoro-4-alkyne substrate analogues were synthesized and examined as potential inhibitors of three enzymes: 4-oxalocrotonate tautomerase (4-OT) and vinylpyruvate hydratase (VPH) from the catechol meta-fission pathway and a closely related 4-OT homologue found in B

  16. BROADBAND SPECTRAL INVESTIGATIONS OF SGR J1550-5418 BURSTS

    Energy Technology Data Exchange (ETDEWEB)

    Lin Lin; Goegues, Ersin; Kaneko, Yuki [Faculty of Engineering and Natural Sciences, Sabanc Latin-Small-Letter-Dotless-I University, Orhanl Latin-Small-Letter-Dotless-I Tuzla, Istanbul 34956 (Turkey); Baring, Matthew G. [Department of Physics and Astronomy, Rice University, MS-108, P.O. Box 1892, Houston, TX 77251 (United States); Granot, Jonathan [Racah Institute of Physics, Hebrew University, Jerusalem 91904 (Israel); Kouveliotou, Chryssa [Space Science Office, VP62, NASA/Marshall Space Flight Center, Huntsville, AL 35812 (United States); Van der Horst, Alexander; Watts, Anna L. [Astronomical Institute ' Anton Pannekoek' , University of Amsterdam, Postbus 94249, 1090 GE Amsterdam (Netherlands); Gruber, David; Von Kienlin, Andreas [Max-Planck-Institut fuer extraterrestrische Physik, Postfach 1312, D-85748 Garching bei Mnchen (Germany); Younes, George [USRA, National Space Science and Technology Center, 320 Sparkman Drive, Huntsville, AL 35805 (United States); Gehrels, Neil, E-mail: linlin@sabanciuniv.edu [NASA Goddard Space Flight Center, Greenbelt, MD 20771 (United States)

    2012-09-01

    We present the results of our broadband spectral analysis of 42 SGR J1550-5418 bursts simultaneously detected with the Swift/X-ray Telescope (XRT) and the Fermi/Gamma-ray Burst Monitor (GBM), during the 2009 January active episode of the source. The unique spectral and temporal capabilities of the XRT windowed timing mode have allowed us to extend the GBM spectral coverage for these events down to the X-ray domain (0.5-10 keV). Our earlier analysis of the GBM data found that the SGR J1550-5418 burst spectra were described equally well with either a Comptonized model or with two blackbody functions; the two models were statistically indistinguishable. Our new broadband (0.5-200 keV) spectral fits show that, on average, the burst spectra are better described with two blackbody functions than with the Comptonized model. Thus, our joint XRT-GBM analysis clearly shows for the first time that the SGR J1550-5418 burst spectra might naturally be expected to exhibit a more truly thermalized character, such as a two-blackbody or even a multi-blackbody signal. Using the Swift and RXTE timing ephemeris for SGR J1550-5418 we construct the distribution of the XRT burst counts with spin phase and find that it is not correlated with the persistent X-ray emission pulse phase from SGR J1550-5418. These results indicate that the burst emitting sites on the neutron star need not to be co-located with hot spots emitting the bulk of the persistent X-ray emission. Finally, we show that there is a significant pulse phase dependence of the XRT burst counts, likely demonstrating that the surface magnetic field of SGR J1550-5418 is not uniform over the emission zones, since it is anticipated that regions with stronger surface magnetic field could trigger bursts more efficiently.

  17. Broadband Spectral Investigations of SGR J1550-5418 Bursts

    Science.gov (United States)

    Lin, Lin; Goegues, Ersin; Baring, Matthew G.; Granot, Jonathan; Kouveliotou, Chryssa; Kaneko, Yuki; van der Horst, Alexander; Gruber, David; von Kienlin, Andreas; Younes, George; Watts, Anna L.; Gehrels, Neil

    2012-01-01

    We present the results of our broadband spectral analysis of 42 SGR J1550-5418 bursts simultaneously detected with the Swift/X-ray Telescope (XRT) and the Fermi/Gamma-ray Burst Monitor (GBM), during the 2009 January active episode of the source. The unique spectral and temporal capabilities of the XRT windowed timing mode have allowed us to extend the GBM spectral coverage for these events down to the X-ray domain (0.5-10 keV). Our earlier analysis of the GBM data found that the SGR J1550-5418 burst spectra were described equally well with either a Comptonized model or with two blackbody functions; the two models were statistically indistinguishable. Our new broadband (0.5-200 keV) spectral fits show that, on average, the burst spectra are better described with two blackbody functions than with the Comptonized model. Thus, our joint XRT-GBM analysis clearly shows for the first time that the SGR J1550-5418 burst spectra might naturally be expected to exhibit a more truly thermalized character, such as a two-blackbody or even a multi-blackbody signal. Using the Swift and RXTE timing ephemeris for SGR J1550-5418 we construct the distribution of the XRT burst counts with spin phase and find that it is not correlated with the persistent X-ray emission pulse phase from SGR J1550-5418. These results indicate that the burst emitting sites on the neutron star need not to be co-located with hot spots emitting the bulk of the persistent X-ray emission. Finally, we show that there is a significant pulse phase dependence of the XRT burst counts, likely demonstrating that the surface magnetic field of SGR J1550-5418 is not uniform over the emission zones, since it is anticipated that regions with stronger surface magnetic field could trigger bursts more efficiently.

  18. Forage polyphenol oxidase and ruminant livestock nutrition.

    Science.gov (United States)

    Lee, Michael R F

    2014-01-01

    Polyphenol oxidase (PPO) is predominately associated with the detrimental effect of browning fruit and vegetables, however, interest within PPO containing forage crops (crops to be fed to animals) has grown since the browning reaction was associated with reduced nitrogen (N) losses in silo and the rumen. The reduction in protein breakdown in silo of red clover (high PPO forage) increased the quality of protein, improving N-use efficiency [feed N into product N (e.g., Milk): NUE] when fed to ruminants. A further benefit of red clover silage feeding is a significant reduction in lipolysis (cleaving of glycerol-based lipid) in silo and an increase in the deposition of beneficial C18 polyunsaturated fatty acid (PUFA) in animal products, which has also been linked to PPO activity. PPOs protection of plant protein and glycerol based-PUFA in silo is related to the deactivation of plant proteases and lipases. This deactivation occurs through PPO catalyzing the conversion of diphenols to quinones which bind with cellular nucleophiles such as protein reforming a protein-bound phenol (PBP). If the protein is an enzyme (e.g., protease or lipase) the complexing denatures the enzyme. However, PPO is inactive in the anaerobic rumen and therefore any subsequent protection of plant protein and glycerol based-PUFA in the rumen must be as a result of events that occurred to the forage pre-ingestion. Reduced activity of plant proteases and lipases would have little effect on NUE and glycerol based-PUFA in the rumen due to the greater concentration of rumen microbial proteases and lipases. The mechanism for PPOs protection of plant protein in the rumen is a consequence of complexing plant protein, rather than protease deactivation per se. These complexed proteins reduce protein digestibility in the rumen and subsequently increase undegraded dietary protein flow to the small intestine. The mechanism for protecting glycerol-based PUFA has yet to be fully elucidated but may be associated

  19. Efficient estimation of burst-mode LDA power spectra

    DEFF Research Database (Denmark)

    Velte, Clara Marika; George, William K

    2010-01-01

    requirements for good statistical convergence due to the random sampling of the data. In the present work, the theory for estimating burst-mode LDA spectra using residence time weighting is discussed and a practical estimator is derived and applied. A brief discussion on the self-noise in spectra...... (axisymmetric turbulent jet). The burst-mode LDA spectra are compared to corresponding spectra from hot-wire data obtained in the same experiments, and to LDA spectra produced by the sample-and-hold methodology. The spectra computed from the residence-time weighted burst-mode algorithm proposed herein compare...

  20. Understanding Neutron Stars using Thermonuclear X-ray Bursts

    Science.gov (United States)

    Bhattacharyya, S.

    2007-01-01

    Studies of thermonuclear X-ray bursts can be very useful to constrain the spin rate, mass and radius of a neutron star = EOS model of high density cold matter in the neutron star cores. Extensive observation and analysis of the data from the rising portions of the bursts = modeling of burst oscillations and thermonuclear flame spreading. Theoretical study of thermonuclear flame spreading on the rapidly spinning neutron stars should be done considering all the main physical effects (including magnetic field, nuclear energy generation, Coriolis effect, strong gravity, etc.).

  1. Neutron Stars and Thermonuclear X-ray Bursts

    Science.gov (United States)

    Bhattacharyya, Sudip

    2007-01-01

    Studies of thermonuclear X-ray bursts can be very useful to constrain the spin rate, mass and radius of a neutron star approaching EOS model of high density cold matter in the neutron star cores. +k Extensive observation and analysis of the data from the rising portions of the bursts - modeling of burst oscillations and thermonuclear flame spreading. +k Theoretical study of thermonuclear flame spreading on the rapidly spinning neutron stars should be done considering all the main physical effects (including magnetic field, nuclear energy generation, Coriolis effect, strong gravity, etc.).

  2. The Etiology and Outcome Analysis of Neonatal Burst Suppression EEG

    Institute of Scientific and Technical Information of China (English)

    ZHANG Lian; ZHOU Yanxia; XU Sanqing

    2007-01-01

    The neonatal burst suppression is a severe EEG pattern and always demonstrates serious damage of nerve system. But the outcome of these patients depends on the different etiology. A total of 256 cases of video EEG recordings were analyzed in order to summarize the etiology and outcome of burst suppression. The results showed that some patients in all 17 cases of burst suppression showed EEG improvement. The etiology was the dominant factor in long term outcome. It was sug-gested that effective video EEG monitoring is helpful for etiologic study and prognosis evaluation.

  3. Dissecting the Phase Response of a Model Bursting Neuron

    CERN Document Server

    Sherwood, William Erik

    2009-01-01

    We investigate the phase response properties of the Hindmarsh-Rose model of neuronal bursting using burst phase response curves (BPRCs) computed with an infinitesimal perturbation approximation and by direct simulation of synaptic input. The resulting BPRCs have a significantly more complicated structure than the usual Type I and Type II PRCs of spiking neuronal models, and they exhibit highly timing-sensitive changes in the number of spikes per burst that lead to large magnitude phase responses. We use fast-slow dissection and isochron calculations to analyze the phase response dynamics in both weak and strong perturbation regimes.

  4. Origin of wide-band IP type II bursts

    Science.gov (United States)

    Pohjolainen, S.; Allawi, H.; Valtonen, E.

    2013-10-01

    Context. Different types of interplanetary (IP) type II bursts have been observed, where the more usual ones show narrow-band and patchy emissions, sometimes with harmonics, and which at intervals may disappear completely from the dynamic spectrum. The more unusual bursts are wide-band and diffuse, show no patches or breaks or harmonic emission, and often have long durations. Type II bursts are thought to be plasma emission, caused by propagating shock waves, but a synchrotron-emitting source has also been proposed as the origin for the wide-band type IIs. Aims: Our aim is to find out where the wide-band IP type II bursts originate and what is their connection to particle acceleration. Methods: We analyzed in detail 25 solar events that produced well-separated, wide-band IP type II bursts in 2001-2011. Their associations to flares, coronal mass ejections (CMEs), and solar energetic particle events (SEPs) were investigated. Results: Of the 25 bursts, 18 were estimated to have heights corresponding to the CME leading fronts, suggesting that they were created by bow shocks ahead of the CMEs. However, seven events were found in which the burst heights were significantly lower and which showed a different type of height-time evolution. Almost all the analyzed wide-band type II bursts were associated with very high-speed CMEs, originating from different parts of the solar hemisphere. In terms of SEP associations, many of the SEP events were weak, had poor connectivity due to the eastern limb source location, or were masked by previous events. Some of the events had precursors in specific energy ranges. These properties and conditions affected the intensity-time profiles and made the injection-time-based associations with the type II bursts difficult to interpret. In several cases where the SEP injection times could be determined, the radio dynamic spectra showed other features (in addition to the wide-band type II bursts) that could be signatures of shock fronts

  5. INTEGRAL monitoring of unusually long X-ray bursts

    DEFF Research Database (Denmark)

    Chenevez, Jérôme; Falanga, M.; Kuulkers, E.

    2008-01-01

    X-ray bursts are thermonuclear explosions on the surface of accreting neutron stars in X-ray binaries. As most of the known X-ray bursters are frequently observed by INTEGRAL, an international collaboration have been taking advantage of its instrumentation to specifically monitor the occurrence...... of exceptional burst events lasting more than ~10 minutes. Half of the dozen so-called intermediate long bursts registered so far have been observed by INTEGRAL. The goal is to derive a comprehensive picture of the relationship between the nuclear ignition processes and the accretion states of the system leading...

  6. Fluorescent Probes for Analysis and Imaging of Monoamine Oxidase Activity

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Dokyoung; Jun, Yong Woong; Ahn, Kyo Han [POSTECH, Pohang (Korea, Republic of)

    2014-05-15

    Monoamine oxidases catalyze the oxidative deamination of dietary amines and amine neurotransmitters, and assist in maintaining the homeostasis of the amine neurotransmitters in the brain. Dysfunctions of these enzymes can cause neurological and behavioral disorders including Parkinson's and Alzheimer's diseases. To understand their physiological roles, efficient assay methods for monoamine oxidases are essential. Reviewed in this Perspective are the recent progress in the development of fluorescent probes for monoamine oxidases and their applications to enzyme assays in cells and tissues. It is evident that still there is strong need for a fluorescent probe with desirable substrate selectivity and photophysical properties to challenge the much unsolved issues associated with the enzymes and the diseases.

  7. Characterization of wheat germin (oxalate oxidase) expressed by Pichia pastoris

    Science.gov (United States)

    Pan, Heng-Yen; Whittaker, Mei M.; Bouveret, Romaric; Berna, Anne; Bernier, François; Whittaker, James W.

    2007-01-01

    High-level secretory expression of wheat (Triticum aestivum) germin/oxalate oxidase was achieved in Pichia pastoris fermentation cultures as an α-mating factor signal peptide fusion, based on the native wheat cDNA coding sequence. The oxalate oxidase activity of the recombinant enzyme is substantially increased (7-fold) by treatment with sodium periodate, followed by ascorbate reduction. Using these methods, approximately 1 g (4×104 U) of purified, activated enzyme was obtained following eight days of induction of a high density Pichia fermentation culture, demonstrating suitability for large-scale production of oxalate oxidase for biotechnological applications. Characterization of the recombinant protein shows that it is glycosylated, with N-linked glycan attached at Asn47. For potential biomedical applications, a nonglycosylated (S49A) variant was also prepared which retains essentially full enzyme activity, but exhibits altered protein-protein interactions. PMID:17399681

  8. A Fast Radio Burst Every Second?

    Science.gov (United States)

    Kohler, Susanna

    2017-09-01

    How frequently do fast radio busts occur in the observable universe? Two researchers have now developed a new estimate.Extragalactic SignalsIn 2007, scientists looking through archival pulsar data discovered a transient radio pulse a flash that lasted only a few milliseconds. Since then, weve found another 22 such fast radio bursts (FRBs), yet we still dont know what causes these energetic signals.Artists illustration of the Very Large Array pinpointing the location of FRB 121102. [Bill Saxton/NRAO/AUI/NSF/Hubble Legacy Archive/ESA/NASA]Recently, some clues have finally come from FRB 121102, the only FRB ever observed to repeat. The multiple pulses detected from this source over the last five years have allowed us to confirm its extragalactic origin and pinpoint an origin for this FRB: a small, low-mass, metal-poor dwarf galaxy located about three billion light-years away.Is FRB 121102 typical? How frequently do such bursts occur, and how frequently can we hope to be able to detect them in the future? And what might these rates tell us about their origins? Two scientists from the Harvard-Smithsonian Center for Astrophysics, Anastasia Fialkov and Abraham Loeb, have now taken a phenomenological approach to answering these questions.Influencing FactorsFialkov and Loeb arguethat there are three main factors that influence the rate of observable FRBs in the universe:The spectral shape of the individual FRBsFRB 121102 had a Gaussian-like spectral profile, which means it peaks in a narrow range of frequencies and may not be detectable outside of that band. If this is typical for FRBs, then signals of distant FRBs may become redshifted to outside of the frequency band that we observe, making them undetectable.FRB detection rates in the 1.253.5GHz band predicted by the authors models (red and blue solid and dashed lines), as a function of the flux limit for detection (top) and as a function of the FRB hosts redshift (bottom). Grey circles mark our detections of FRBs thus

  9. Closest Gamma Ray Burst Providing Scientists With Crucial Test for Burst Physics

    Science.gov (United States)

    2003-05-01

    The closest Gamma Ray Burst (GRB) yet known is providing astronomers with a rare opportunity to gain information vital to understanding these powerful cosmic explosions. Extremely precise radio-telescope observations already have ruled out one proposed mechanism for the bursts. "This is the closest and brightest GRB we've ever seen, and we can use it to decipher the physics of how these bursts work," said Greg Taylor of the National Radio Astronomy Observatory (NRAO) in Socorro, NM. Taylor worked with Dale Frail, also of the NRAO, along with Prof. Shri Kulkarni and graduate student Edo Berger of Caltech in studying a GRB detected on March 29, 2003. The scientists presented their findings to the American Astronomical Society's meeting in Nashville, TN. VLBA image of GRB 030329 VLBA IMAGE of GRB 030329 CREDIT: NRAO/AUI/NSF (Click on Image for Larger Version) Taylor and Frail used the National Science Foundation's (NSF) Very Long Baseline Array (VLBA) and other radio telescopes to study the burst, known as GRB 030329. In a series of observations from April 1 to May 19, they determined the size of the expanding "fireball" from the burst and measured its position in the sky with great precision. At a distance of about 2.6 billion light-years, GRB 030329 is hardly next door. However, compared to other GRBs at typical distances of 8-10 billion light-years, it presents an easier target for study. "We only expect to see one burst per decade this close," said Frail. The precise measurement of the object's position allowed the scientists to show that one theoretical model for GRBs can be ruled out. This model, proposed in 2000, says that the radio-wave energy emitted by the GRB comes from "cannonballs" of material shot from the explosion at extremely high speeds. "The 'cannonball model' predicted that we should see the radio-emitting object move across the sky by a specific amount. We have not seen that motion," Taylor said. The currently standard "fireball model" of GRBs

  10. Functional characterization of gibberellin oxidases from cucumber, Cucumis sativus L.

    Science.gov (United States)

    Pimenta Lange, Maria João; Liebrandt, Anja; Arnold, Linda; Chmielewska, Sara-Miriam; Felsberger, André; Freier, Eduard; Heuer, Monika; Zur, Doreen; Lange, Theo

    2013-06-01

    Cucurbits have been used widely to elucidate gibberellin (GA) biosynthesis. With the recent availability of the genome sequence for the economically important cucurbit Cucumis sativus, sequence data became available for all genes potentially involved in GA biosynthesis for this species. Sixteen cDNAs were cloned from root and shoot of 3-d to 7-d old seedlings and from mature seeds of C. sativus. Two cDNAs code for GA 7-oxidases (CsGA7ox1, and -2), five for GA 20-oxidases (CsGA20ox1, -2, -3, -4, and -5), four for GA 3-oxidases (CsGA3ox1, -2, -3, and -4), and another five for GA 2-oxidases (CsGA2ox1, -2, -3, -4, and -5). Their enzymatic activities were investigated by heterologous expression of the cDNAs in Escherichia coli and incubation of the cell lysates with (14)C-labelled, D2-labelled, or unlabelled GA-substrates. The two GA 7-oxidases converted GA12-aldehyde to GA12 efficiently. CsGA7ox1 converted GA12 to GA14, to 15α-hydroxyGA12, and further to 15α-hydroxyGA14. CsGA7ox2 converted GA12 to its 12α-hydroxylated analogue GA111. All five GA 20-oxidases converted GA12 to GA9 as a major product, and to GA25 as a minor product. The four GA 3-oxidases oxidized the C19-GA GA9 to GA4 as the only product. In addition, three of them (CsGA3ox2, -3, and -4) converted the C20-GA GA12 to GA14. The GA 2-oxidases CsGA2ox1, -2, -3, and -4 oxidized the C19-GAs GA9 and GA4 to GA34 and GA51, respectively. CsGA2ox2, -3, and -4 converted GA51 and GA34 further to respective GA-catabolites. In addition to C19-GAs, CsGA2ox4 also converted the C20-GA GA12 to GA110. In contrast, CsGA2ox5 oxidized only the C20 GA12 to GA110 as the sole product. As shown for CsGA20ox1 and CsGA3ox1, similar reactions were catalysed with 13-hydroxlyated GAs as substrates. It is likely that these enzymes are also responsible for the biosynthesis of 13-hydroxylated GAs in vivo that occur at low levels in cucumber.

  11. A Conserved Steroid Binding Site in Cytochrome c Oxidase

    Energy Technology Data Exchange (ETDEWEB)

    Qin, Ling; Mills, Denise A.; Buhrow, Leann; Hiser, Carrie; Ferguson-Miller, Shelagh (Michigan)

    2010-09-02

    Micromolar concentrations of the bile salt deoxycholate are shown to rescue the activity of an inactive mutant, E101A, in the K proton pathway of Rhodobacter sphaeroides cytochrome c oxidase. A crystal structure of the wild-type enzyme reveals, as predicted, deoxycholate bound with its carboxyl group at the entrance of the K path. Since cholate is a known potent inhibitor of bovine oxidase and is seen in a similar position in the bovine structure, the crystallographically defined, conserved steroid binding site could reveal a regulatory site for steroids or structurally related molecules that act on the essential K proton path.

  12. Colloidal properties of biomacromolecular solutions: Towards urate oxidase crystal design

    Science.gov (United States)

    Bonneté, Françoise

    2013-02-01

    Crystallization of biological macromolecules is governed by weak interaction forces, attractive and repulsive. Knowledge of solution properties, via second virial coefficient measurements, makes it possible to select physico-chemical parameters that govern and control phase diagrams and thus to grow crystals for specific applications (bio-crystallography or pharmaceutical processes). We highlight here with urate oxidase a salting-in effect that increases its solubility and the depletion effect of amphiphilic polymer, at a polymer concentration above its cmc, in order to grow diffracting crystals of urate oxidase. These two effects were used to grow crystals for high pressure crystallography and in a purification process.

  13. Direct Enzymatic Assay for Alcohol Oxidase, Alcohol Dehydrogenase, and Formaldehyde Dehydrogenase in Colonies of Hansenula polymorpha

    OpenAIRE

    Eggeling, L; Sahm, H

    1980-01-01

    A procedure is described for the qualitative direct identification of alcohol oxidase, alcohol dehydrogenase, and formaldehyde dehydrogenase in yeast colonies. The method has been applied successfully to isolate mutants of Hansenula polymorpha with altered glucose repression of alcohol oxidase.

  14. Photon mass limits from fast radio bursts

    Science.gov (United States)

    Bonetti, Luca; Ellis, John; Mavromatos, Nikolaos E.; Sakharov, Alexander S.; Sarkisyan-Grinbaum, Edward K.; Spallicci, Alessandro D. A. M.

    2016-06-01

    The frequency-dependent time delays in fast radio bursts (FRBs) can be used to constrain the photon mass, if the FRB redshifts are known, but the similarity between the frequency dependences of dispersion due to plasma effects and a photon mass complicates the derivation of a limit on mγ. The dispersion measure (DM) of FRB 150418 is known to ∼ 0.1%, and there is a claim to have measured its redshift with an accuracy of ∼ 2%, but the strength of the constraint on mγ is limited by uncertainties in the modelling of the host galaxy and the Milky Way, as well as possible inhomogeneities in the intergalactic medium (IGM). Allowing for these uncertainties, the recent data on FRB 150418 indicate that mγ ≲ 1.8 ×10-14 eVc-2 (3.2 ×10-50 kg), if FRB 150418 indeed has a redshift z = 0.492 as initially reported. In the future, the different redshift dependences of the plasma and photon mass contributions to DM can be used to improve the sensitivity to mγ if more FRB redshifts are measured. For a fixed fractional uncertainty in the extra-galactic contribution to the DM of an FRB, one with a lower redshift would provide greater sensitivity to mγ.

  15. Blueshifting may explain the gamma ray bursts

    CERN Document Server

    Krasiński, Andrzej

    2015-01-01

    It is shown that the basic observed properties of the gamma-ray bursts (GRBs) are accounted for if one assumes that the GRBs arise by blueshifting the emission radiation of hydrogen and helium generated during the last scattering epoch. The blueshift generator for a single GRB is a Lema\\^{\\i}tre -- Tolman (L--T) region with a nonconstant bang-time function $t_B(r)$ matched into a Friedmann background. Blueshift visible to the observer arises \\textit{only on radial rays} that are emitted in the L--T region. The paper presents three L--T models with different Big Bang profiles, adapted for the highest and the lowest end of the GRB frequency range. The models account for: (1) The observed frequency range of the GRBs; (2) Their limited duration; (3) The afterglows; (4) Their hypothetical collimation into narrow jets; (5) The large distances to their sources; (6) The multitude of the observed GRBs. Properties (2), (3) and (6) are accounted for only qualitatively. With a small correction of the parameters of the mo...

  16. Studying the WHIM with Gamma Ray Bursts

    CERN Document Server

    Branchini, E; Corsi, A; Martizzi, D; Amati, L; Herder, J W den; Galeazzi, M; Gendre, B; Kaastra, J; Moscardini, L; Nicastro, F; Ohashi, T; Paerels, F; Piro, L; Roncarelli, M; Takei, Y; Viel, M

    2009-01-01

    We assess the possibility to detect and characterize the physical state of the missing baryons at low redshift by analyzing the X-ray absorption spectra of the Gamma Ray Burst [GRB] afterglows, measured by a micro calorimeters-based detector with 3 eV resolution and 1000 cm2 effective area and capable of fast re-pointing, similar to that on board of the recently proposed X-ray satellites EDGE and XENIA. For this purpose we have analyzed mock absorption spectra extracted from different hydrodynamical simulations used to model the properties of the Warm Hot Intergalactic Medium [WHIM]. These models predict the correct abundance of OVI absorption lines observed in UV and satisfy current X-ray constraints. According to these models space missions like EDGE and XENIA should be able to detect about 60 WHIM absorbers per year through the OVII line. About 45 % of these have at least two more detectable lines in addition to OVII that can be used to determine the density and the temperature of the gas. Systematic error...

  17. The SVOM gamma-ray burst mission

    CERN Document Server

    Cordier, B; Atteia, J -L; Basa, S; Claret, A; Daigne, F; Deng, J; Dong, Y; Godet, O; Goldwurm, A; Götz, D; Han, X; Klotz, A; Lachaud, C; Osborne, J; Qiu, Y; Schanne, S; Wu, B; Wang, J; Wu, C; Xin, L; Zhang, B; Zhang, S -N

    2015-01-01

    We briefly present the science capabilities, the instruments, the operations, and the expected performance of the SVOM mission. SVOM (Space-based multiband astronomical Variable Objects Monitor) is a Chinese-French space mission dedicated to the study of Gamma-Ray Bursts (GRBs) in the next decade. The SVOM mission encompasses a satellite carrying four instruments to detect and localize the prompt GRB emission and measure the evolution of the afterglow in the visible band and in X-rays, a VHF communication system enabling the fast transmission of SVOM alerts to the ground, and a ground segment including a wide angle camera and two follow-up telescopes. The pointing strategy of the satellite has been optimized to favor the detection of GRBs located in the night hemisphere. This strategy enables the study of the optical emission in the first minutes after the GRB with robotic observatories and the early spectroscopy of the optical afterglow with large telescopes to measure the redshifts. The study of GRBs in the...

  18. The Nature of Gamma Ray Burst Supernovae

    CERN Document Server

    Cano, Zach

    2012-01-01

    Gamma Ray Bursts (GRBs) and Supernovae (SNe) are among the brightest and most energetic physical processes in the universe. It is known that core-collapse SNe arise from the gravitational collapse and subsequent explosion of massive stars (the progen- itors of nearby core-collapse SNe have been imaged and unambiguously identified). It is also believed that the progenitors of long-duration GRBs (L-GRBs) are massive stars, mainly due to the occurrence and detection of very energetic core-collapse su- pernovae that happen both temporally and spatially coincident with most L-GRBs. However many outstanding questions regarding the nature of these events exist: How massive are the progenitors? What evolutionary stage are they at when they explode? Do they exist as single stars or in binary systems (or both, and to what fractions)? The work presented in this thesis attempts to further our understanding at the types of progenitors that give rise to long-duration GRB supernovae (GRB-SNe). This work is based on optical ...

  19. Detecting fast radio bursts at decametric wavelengths

    CERN Document Server

    Rajwade, Kaustubh

    2016-01-01

    Fast radio bursts (FRBs) are highly dispersed, sporadic radio pulses that are likely extragalactic in nature. Here we investigate the constraints on the source population from surveys carried out at frequencies $<1$~GHz. All but one FRB has so far been discovered in the 1--2~GHz band, but new and emerging instruments look set to become valuable probes of the FRB population at sub-GHz frequencies in the near future. In this paper, we consider the impacts of free-free absorption and multi-path scattering in our analysis via a number of different assumptions about the intervening medium. We consider previous low frequency surveys alongwith an ongoing survey with the University of Technology digital backend for the Molonglo Observatory Synthesis Telescope (UTMOST) as well as future observations with the Canadian Hydrogen Intensity Mapping Experiment (CHIME) and the Hydrogen Intensity and Real-Time Analysis Experiment (HIRAX). We predict that CHIME and HIRAX will be able to observe $\\sim$ 30 or more FRBs per da...

  20. Photon Mass Limits from Fast Radio Bursts

    CERN Document Server

    Bonetti, Luca; Mavromatos, Nikolaos E.; Sakharov, Alexander S.; Sarkisyan-Grinbaum, Edward K.G.; Spallicci, Alessandro D.A.M.

    2016-01-01

    The frequency-dependent time delays in fast radio bursts (FRBs) can be used to constrain the photon mass, if the FRB redshifts are known, but the similarity between the frequency dependences of dispersion due to plasma effects and a photon mass complicates the derivation of a limit on $m_\\gamma$. The redshift of FRB 150418 has been measured to $\\sim 2$% and its dispersion measure (DM) is known to $\\sim 0.1$%, but the strength of the constraint on $m_\\gamma$ is limited by uncertainties in the modelling of the host galaxy and the Milky Way, as well as possible inhomogeneities in the intergalactic medium (IGM). Allowing for these uncertainties, the recent data on FRB 150418 indicate that $m_\\gamma \\lesssim 1.7 \\times 10^{-14}$ eV c$^{-2}$ ($4.6 \\times 10^{-50}$ kg). In the future, the different redshift dependences of the plasma and photon mass contributions to DM can be used to improve the sensitivity to $m_\\gamma$ if more FRB redshifts are measured. For a fixed fractional uncertainty in the extra-galactic cont...