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Sample records for bull trout enumeration

  1. Monitor and Protect Wigwam River Bull Trout for Koocanusa Reservoir; White River Bull Trout Enumeration Project Summary, Progress Report 2003.

    Energy Technology Data Exchange (ETDEWEB)

    Cope, R.

    2004-02-01

    This report summarizes the first year of a three-year bull trout (Salvelinus confluentus) enumeration project on the White River and is a co-operative initiative of the British Columbia Ministry of Water, Land, and Air Protection and Bonneville Power Administration. The White River has been identified as an important bull trout spawning tributary of the upper Kootenay River in southeastern British Columbia. The objective was to collect information on the returning adult spawning population to the White River through the use of a fish fence and traps, and to conduct redd surveys at the conclusion of spawning to provide an index of spawning escapement and distribution. The fence was installed on September 9th, 2003 and was operated continuously (i.e. no high-water or breaching events) until the fence was removed on October 9th, 2003. Estimation of the spawning population of White River bull trout was incomplete. This was due to a larger and more protracted out-migration than expected. As a result, the bull trout spawning population of the White River was estimated to be somewhere above 899 fish. In comparison, this represents approximately one third the population estimate of the 2003 Wigwam River bull trout spawning population. Based on redd index data, the number of bull trout per redd was over twice that of the Wigwam River or Skookumchuck Creek. This was expected as the index sites on the Wigwam River and Skookumchuck Creek cover the majority of the spawning area. This is not true on the White River. From previous redd counts, it is known that there are approximately twice as many redds in Blackfoot Creek as there are in the index site. Additionally, given the large size of the White River watershed and in particular, the large number of tributaries, there is a high likelihood that important bull trout spawning areas remain unidentified. Both floy tag and radio-telemetry data for the White River bull trout have identified extensive life history migrations

  2. Monitor and Protect Wigwam River Bull Trout for Koocanusa Reservoir : Summary of the Skookumchuck Creek Bull Trout Enumeration Project, Annual Report 2000.

    Energy Technology Data Exchange (ETDEWEB)

    Baxter, James S.; Baxter, Jeremy

    2001-02-01

    An enumeration fence and traps were installed on Skookumchuck Creek from September 7 th to October 16 th to enable the capture of post-spawning bull trout emigrating out of the watershed. During the study period, a total of 252 bull trout were sampled through the enumeration fence. Length, weight, and sex were determined for all but one of the 252 bull trout captured. In total, one fish of undetermined sex, 63 males and 188 females were processed through the fence. A total of 67 bull trout were observed on a snorkel survey prior to the fence being removed on October 16 th . Coupled with the fence count, the total bull trout count during this project was 319 fish. Several other species of fish were captured at the enumeration fence including westslope cutthroat trout, Rocky Mountain whitefish, kokanee, sucker, and Eastern brook trout. Redds were observed during ground surveys in three different locations (river km 27.5- 28.5, km 29-30, and km 24-25). The largest concentration of redds were noted in the upper two sections which have served as the index sections over the past four years. A total of 197 bull trout redds were enumerated on the ground on October 4 th . The majority of redds (n=189) were observed in the 3.0 km index section (river km 27.5-30.5) that has been surveyed over the past four years. The additional 8 redds were observed in a 1.5 km section (river km 24.0-25.5). Summary plots of water temperature for Bradford Creek, Sandown Creek, Skookumchuck Creek at km 39.5, and Skookumchuck Creek at the fence site suggested that water temperatures were within the range preferred by bull trout for spawning, egg incubation, and rearing.

  3. Bull Trout Spawning Surveys: Kootenai National Wildlife Refuge

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — Bull trout are listed as threatened under the Endangered Species Act and Myrtle Creek was designated as critical habitat for bull trout this year. Myrtle Creek...

  4. Investigations of Bull Trout (Salvelinus Confluentus), Steelhead Trout (Oncorhynchus Mykiss), and Spring Chinook Salmon (O. Tshawytscha) Interactions in Southeast Washington Streams : 1991 Annual Report.

    Energy Technology Data Exchange (ETDEWEB)

    Martin, Steven W.

    1992-07-01

    four streams. Juvenile bull trout utilized scour pool and run habitat the most in all four streams. YOY bull trout preferred plunge pool and scour pool habitat, as did juvenile bull trout in all four streams. These data show that while in the presence of the putative competitors, bull trout prefer the same habitat as in the absence of the putative competitors. Juvenile bull trout preferred mayflies and stoneflies in Mill Creek, while in the presence of the competitor species they preferred caddisflies, stoneflies, and Oligochaeta. It is felt that this difference is due to the differences in food items available and not species interactions, bull trout consume what is present. Adult bull trout were difficult to capture, and therefore it was difficult to determine the migratory habits in the Tucannon River. It is recommended that future studies use radio telemetry to determine the migratory habitat of these fish. The age, condition, and growth rates of bull trout differed only minimally between streams, indicating that if competitive interactions are occurring between these species it is not reflected by: (1) the length at age of bull trout; (2) the length-weight relationship of bull trout; or (3) the rate of growth of bull trout. The spawning habits of bull trout and spring chinook salmon are similar in the Tucannon River, however it was found that they spawn in different river locations. The salmon spawn below river kilometer 83, while 82% of bull trout spawn above that point. The peak of spawning for salmon occurred 10 days before the peak of bull trout spawning, indicating that very little competition for spawning locations occurs between these species in the Tucannon River. Future species interactions study recommendations include the use of electrofishing to enumerate bull trout populations, snorkeling to identify micro-habitat utilization, seasonal diet analysis, and radio transmitters to identify seasonal migration patterns of bull trout.

  5. Monitor and Protect Wigwam River Bull Trout for Koocanusa Reservoir; Skookumchuck Creek Juvenile Bull Trout and Fish Habitat Monitoring Program, Annual Report 2002.

    Energy Technology Data Exchange (ETDEWEB)

    Cope, R.

    2003-06-01

    The Skookumchuck Creek juvenile bull trout (Salvelinus confluentus) and fish habitat-monitoring program is a co-operative initiative of the British Columbia Ministry of Water, Land, and Air Protection and Bonneville Power Administration. This project was commissioned in planning for fish habitat protection and forest development within the Skookumchuck Creek watershed and was intended to expand upon similar studies initiated within the Wigwam River from 2000 to 2002. The broad intent is to develop a better understanding of juvenile bull trout and Westslope cutthroat trout recruitment and the ongoing hydrologic and morphologic processes, especially as they relate to spawning and rearing habitat quality. The 2002 project year represents the first year of a long-term bull trout-monitoring program with current studies focused on collecting baseline information. This report provides a summary of results obtained to date. Bull trout represented 72.4% of the catch. Fry dominated the catch because site selection was biased towards electrofishing sample sites which favored high bull trout fry capture success. The mean density of all juvenile bull trout was estimated to be 6.6 fish/100m{sup 2}. This represents one-half the densities reported for the 2002 Wigwam River enumeration program, even though enumeration of bull trout redds was an order of magnitude higher for the Wigwam River. Typically, areas with combined fry and juvenile densities greater than 1.5 fish per 100 m{sup 2} are cited as critical rearing areas. Trends in abundance appeared to be related to proximity to spawning areas, bed material size, and water depth. Cover components utilized by juvenile and adult bull trout and cutthroat trout were interstices, boulder, depth, overhead vegetation and LWD. The range of morphological stream types encompass the stable and resilient spectrum (C3(1), C3 and B3c). The Skookumchuck can be generalized as a slightly entrenched, meandering, riffle-pool, cobble dominated

  6. Status of Oregon's Bull Trout.

    Energy Technology Data Exchange (ETDEWEB)

    Buchanan, David V.; Hanson, Mary L.; Hooton, Robert M.

    1997-10-01

    Limited historical references indicate that bull trout Salvelinus confluentus in Oregon were once widely spread throughout at least 12 basins in the Klamath River and Columbia River systems. No bull trout have been observed in Oregon's coastal systems. A total of 69 bull trout populations in 12 basins are currently identified in Oregon. A comparison of the 1991 bull trout status (Ratliff and Howell 1992) to the revised 1996 status found that 7 populations were newly discovered and 1 population showed a positive or upgraded status while 22 populations showed a negative or downgraded status. The general downgrading of 32% of Oregon's bull trout populations appears largely due to increased survey efforts and increased survey accuracy rather than reduced numbers or distribution. However, three populations in the upper Klamath Basin, two in the Walla Walla Basin, and one in the Willamette Basin showed decreases in estimated population abundance or distribution.

  7. Wigwam River juvenile bull trout and fish habitat monitoring program : 2001 data report

    International Nuclear Information System (INIS)

    The Wigwam River juvenile bull trout and fish habitat monitoring program is a co-operative initiative of the British Columbia Ministry of Water, Land, and Air Protection and Bonneville Power Administration. The Wigwam River has been characterized as the single most important bull trout spawning stream in the Kootenay Region. This report provides a summary of results obtained during the second year (2001) of the juvenile bull trout enumeration and fish habitat assessment program. This project was commissioned in planning for fish habitat protection and forest development within the upper Wigwam River valley. The broad intent is to develop a better understanding of juvenile bull trout and Westslope cutthroat trout recruitment and the ongoing hydrologic and morphologic processes in the upper Wigwam River, especially as they relate to spawning and rearing habitat quality. Five permanent sampling sites were established August 2000 in the Wigwam river drainage (one site on Bighorn Creek and four sites on the mainstem Wigwam River). At each site, juvenile (0(sup+), 1(sup+) and 2(sup+) age classes) fish densities and stream habitat conditions were measured over two stream meander wavelengths. Bull trout represented 95.1% of the catch and the mean density of juvenile bull trout was estimated to be 20.7 fish/100m(sup 2) (range 0.9 to 24.0 fish/100m(sup 2)). This compares to 17.2 fish/100m(sup 2) (+20%) for the previous year. Fry (0(sup+)) dominated the catch and this was a direct result of juvenile bull trout ecology and habitat partitioning among life history stages. Site selection was biased towards sample sites which favored high bull trout fry capture success. Comparison of fry density estimates replicated across both the preliminary survey (1997) and the current study (Cope and Morris 2001) illustrate the stable nature of these high densities. Bull trout populations have been shown to be extremely susceptible to habitat degradation and over-harvest and are ecologically

  8. Bull trout distribution and abundance in the waters on and bordering the Warm Springs Indian Reservation: 2001 annual report

    International Nuclear Information System (INIS)

    of the total habitat. Multiple pass spawning ground surveys were conducted during late August through October in the Warm Springs R. and Shitike Cr. The number of redds enumerated in the Warm Springs R. declined substantially from 1998-2000 observations. Total redds recorded in Shitike Cr. was higher than 2000, but fewer than observed in 1998-1999. Spatial and temporal distribution in spawning within Warm Springs R. and Shitike Cr. is discussed. Juvenile emigration was monitored in Shitike Cr. The number of emigrants was the highest recorded since 1996. As in past years both a spring and fall migration period was observed. Adult escapement was monitored in the Warm Spring R. and Shitike Cr. The number of adults recorded passing the Warm Springs National Fish Hatchery weir was the second highest recorded since 1995. An adult trap was successfully operated in Shitike Cr. Eighty adult bull trout were enumerated during 2001

  9. Are brown trout replacing or displacing bull trout populations in a changing climate?

    Science.gov (United States)

    Al-Chokhachy, Robert K.; Schmetterling, David A.; Clancy, Chris; Saffel, Pat; Kovach, Ryan; Nyce, Leslie; Liermann, Brad; Fredenberg, Wade A.; Pierce, Ron

    2016-01-01

    Understanding how climate change may facilitate species turnover is an important step in identifying potential conservation strategies. We used data from 33 sites in western Montana to quantify climate associations with native bull trout (Salvelinus confluentus) and non-native brown trout (Salmo trutta) abundance and population growth rates (λ). We estimated λ using exponential growth state space models and delineated study sites based on bull trout use for either Spawning and Rearing (SR) or Foraging, Migrating, and Overwintering (FMO) habitat. Bull trout abundance was negatively associated with mean August stream temperatures within SR habitat (r = -0.75). Brown trout abundance was generally highest at temperatures between 12 and 14°C. We found bull trout λ were generally stable at sites with mean August temperature below 10°C but significantly decreasing, rare, or extirpated at 58% of the sites with temperatures exceeding 10°C. Brown trout λ were highest in SR and sites with temperatures exceeding 12°C. Declining bull trout λs at sites where brown trout were absent suggests brown trout are likely replacing bull trout in a warming climate.

  10. Bull Trout Distribution, Pacific Northwest (updated March, 2006)

    Data.gov (United States)

    Pacific States Marine Fisheries Commission — This dataset is a record of fish distribution and activity for BULL TROUT contained in the StreamNet database. This feature class was created based on linear event...

  11. Effects of roads on bull trout (Salvelinus confluentus), a federally threatened species

    OpenAIRE

    Teachout, Emily; Quan, Jennifer

    2001-01-01

    The bull trout (Salvelinus confluentus) is federally listed as threatened under the Endangered Species Act. Bull trout are apex predators requiring a large prey base and a large home range, and are known to move throughout and between basins in search of prey. However, bull trout are dependent upon very cold, clean waters for spawning (below 9 degrees Celsius) and are typically characterized as spawning in the upper-most reaches of watersheds. Bull trout have four life history forms: resident...

  12. Swimming endurance of bull trout, lake trout, arctic char, and rainbow trout following challenge with Renibacterium salmoninarum

    Science.gov (United States)

    Jones, D.T.; Moffitt, C.M.

    2004-01-01

    We tested the swimming endurance of juvenile bull trout Salvelinus confluentus, lake trout S. namaycush, Arctic char S. alpinus, and rainbow trout Oncorhynchus mykiss at 9??C and 15??C to determine whether sublethal infection from a moderate challenge of Renibacterium salmoninarum administered months before testing affected the length of time fish could maintain a swimming speed of 5-6 body lengths per second in an experimental flume. Rainbow trout and Arctic char swam longer in trials than did bull trout or lake trout, regardless of challenge treatment. When we tested fish 14-23 weeks postchallenge, we found no measurable effect of R. salmoninarum on the swimming endurance of the study species except for bull trout, which showed a mixed response. We conducted additional trials with bull trout 5-8 weeks postchallenge to determine whether increasing the challenge dose would affect swimming endurance and hematocrit. In those tests, bull trout with clinical signs of disease and those exposed to the highest challenge doses had significantly reduced swimming endurance compared with unchallenged control fish. Fish hematocrit levels measured at the end of all swimming endurance tests varied among species and between test temperatures, and patterns were not always consistent between challenged and control fish.

  13. Malheur River Basin cooperative bull trout/redband trout research project, annual report FY 1999; ANNUAL

    International Nuclear Information System (INIS)

    The purpose of this study is to document the seasonal distribution of adult/sub-adult bull trout (Salvelinus confluentus) in the Malheur River basin. Due to the decline of bull trout in the Columbia Basin, the United States Fish and Wildlife Service listed bull trout as a threatened species in June 1998. Past land management activities; construction of dams; and fish eradication projects in the North Fork and Middle Fork Malheur River by poisoning have worked in concert to cumulatively impact native species in the Malheur Basin (Bowers et. al. 1993). Survival of the remaining bull trout populations is severely threatened (Buchanan 1997). 1999 Research Objects are: (1) Document the migratory patterns of adult/sub-adult bull trout in the North Fork Malheur River; (2) Determine the seasonal bull trout use of Beulah Reservoir and bull trout entrainment; and (3) Timing and location of bull trout spawning in the North Fork Malheur River basin. The study area includes the Malheur basin from the mouth of the Malheur River located near Ontario, Oregon to the headwaters of the North Fork Malheur River (Map 1). All fish collected and most of the telemetry effort was done on the North Fork Malheur River subbasin (Map 2). Fish collection was conducted on the North Fork Malheur River at the tailwaters of Beulah Reservoir (RK 29), Beulah Reservoir (RK 29-RK 33), and in the North Fork Malheur River at Crane Crossing (RK 69) to the headwaters of the North Fork Malheur. Radio telemetry was done from the mouth of the Malheur River in Ontario, Oregon to the headwaters of the North Fork Malheur. This report will reflect all migration data collected from 3/1/99 to 12/31/99

  14. Bull Trout Life History, Genetics, Habitat Needs, and Limiting Factors in Central and Northeast Oregon. Annual Report 1996.

    Energy Technology Data Exchange (ETDEWEB)

    Bellerud, Blane L.; Gunckel, Stephanie; Hemmingsen, Alan R.; Buchanan, David V.; Howell, Philip J.

    1997-10-01

    This study is part of a multi-year research project studying aspects of bull trout life history, ecology and genetics. This report covers the activities of the project in 1996. Results and analysis are presented in the following five areas: (1) analysis of the genetic structure of Oregon bull trout populations; (2) distribution and habitat use of bull trout and brook trout in streams containing both species; (3) bull trout spawning surveys; (4) summary and analysis of historical juvenile bull trout downstream migrant trap catches in the Grande Ronde basin; and (5) food habits and feeding behavior of bull trout alone and in sympatry with brook trout.

  15. Bull trout life history, genetics, habitat needs, and limiting factors in Central and Northeast Oregon. Annual report 1996

    International Nuclear Information System (INIS)

    This study is part of a multi-year research project studying aspects of bull trout life history, ecology and genetics. This report covers the activities of the project in 1996. Results and analysis are presented in the following five areas: (1) analysis of the genetic structure of Oregon bull trout populations; (2) distribution and habitat use of bull trout and brook trout in streams containing both species; (3) bull trout spawning surveys; (4) summary and analysis of historical juvenile bull trout downstream migrant trap catches in the Grande Ronde basin; and (5) food habits and feeding behavior of bull trout alone and in sympatry with brook trout

  16. Relative sensitivity of bull trout (Salvelinus confluentus) and rainbow trout (Oncorhynchus mykiss) to acute copper toxicity.

    Science.gov (United States)

    Hansen, James A; Lipton, Josh; Welsh, Paul G

    2002-03-01

    Bull trout (Salvelinus confluentus) were recently listed as threatened in the United States under the federal Endangered Species Act. Past and present habitat for this species includes waterways contaminated with heavy metals released from mining activities. Because the sensitivity of this species to copper was previously unknown, we conducted acute copper toxicity tests with bull and rainbow trout (Oncorhynchus mykiss) in side-by-side comparison tests. Bioassays were conducted using water at two temperatures (8 degrees C and 16 degrees C) and two hardness levels (100 and 220 mg/L as CaCO3). At a water hardness of 100 mg/L, both species were less sensitive to copper when tested at 16 degrees C compared to 8 degrees C. The two species had similar sensitivity to copper in 100-mg/ L hardness water, but bull trout were 2.5 to 4 times less sensitive than rainbow trout in 220-mg/L hardness water. However, when our results were viewed in the context of the broader literature on rainbow trout sensitivity to copper, the sensitivities of the two species appeared similar. This suggests that adoption of toxicity thresholds that are protective of rainbow trout would be protective of bull trout; however, an additional safety factor may be warranted because of the additional level of protection necessary for this federally threatened species. PMID:11878477

  17. Temporary Restoration of Bull Trout Passage at Albeni Falls Dam

    Energy Technology Data Exchange (ETDEWEB)

    Paluch, Mark; Scholz, Allan; McLellan, Holly [Eastern Washington University Department of Biology; Olson, Jason [Kalispel Tribe of Indians Natural Resources Department

    2009-07-13

    This study was designed to monitor movements of bull trout that were provided passage above Albeni Falls Dam, Pend Oreille River. Electrofishing and angling were used to collect bull trout below the dam. Tissue samples were collected from each bull trout and sent to the U. S. Fish and Wildlife Service Abernathy Fish Technology Center Conservation Genetics Lab, Washington. The DNA extracted from tissue samples were compared to a catalog of bull trout population DNA from the Priest River drainage, Lake Pend Oreille tributaries, and the Clark Fork drainage to determine the most probable tributary of origin. A combined acoustic radio or radio tag was implanted in each fish prior to being transported and released above the dam. Bull trout relocated above the dam were able to volitionally migrate into their natal tributary, drop back downstream, or migrate upstream to the next dam. A combination of stationary radio receiving stations and tracking via aircraft, boat, and vehicle were used to monitor the movement of tagged fish to determine if the spawning tributary it selected matched the tributary assigned from the genetic analysis. Seven bull trout were captured during electrofishing surveys in 2008. Of these seven, four were tagged and relocated above the dam. Two were tagged and left below the dam as part of a study monitoring movements below the dam. One was immature and too small at the time of capture to implant a tracking tag. All four fish released above the dam passed by stationary receivers stations leading into Lake Pend Oreille and no fish dropped back below the dam. One of the radio tags was recovered in the tributary corresponding with the results of the genetic test. Another fish was located in the vicinity of its assigned tributary, which was impassable due to low water discharge at its mouth. Two fish have not been located since entering the lake. Of these fish, one was immature and not expected to enter its natal tributary in the fall of 2008. The other

  18. Bull trout population assessment in the Columbia River Gorge/annual report fy2000; ANNUAL

    International Nuclear Information System (INIS)

    We summarized existing knowledge regarding the known distribution of bull trout (Salvelinus confluentus) across four sub-basins in the Columbia River Gorge in Washington. The Wind River, Little White Salmon River, White Salmon River, and the Klickitat River sub-basins were analyzed. Cold water is essential to the survival, spawning, and rearing of bull trout. We analyzed existing temperature data, installed Onset temperature loggers in the areas of the four sub-basins where data was not available, and determined that mean daily water temperatures were and lt;15 C and appropriate for spawning and rearing of bull trout. We snorkel surveyed more than 74 km (46.25 mi.) of rivers and streams in the four sub-basins (13.8 km at night and 60.2 km during the day) and found that night snorkeling was superior to day snorkeling for locating bull trout. Surveys incorporated the Draft Interim Protocol for Determining Bull Trout Presence (Peterson et al. In Press). However, due to access and safety issues, we were unable to randomly select sample sites nor use block nets as recommended. Additionally, we also implemented the Bull Trout/Dolly Varden sampling methodology described in Bonar et al. (1997). No bull trout were found in the Wind River, Little White Salmon, or White Salmon River sub-basins. We found bull trout in the West Fork Klickitat drainage of the Klickitat River Sub-basin. Bull trout averaged 6.7 fish/100m(sup 2) in Trappers Creek, 2.6 fish/100m(sup 2) on Clearwater Creek, and 0.4 fish/100m(sup 2) in Little Muddy Creek. Bull trout was the only species of salmonid encountered in Trappers Creek and dominated in Clearwater Creek. Little Muddy Creek was the only creek where bull trout and introduced brook trout occurred together. We found bull trout only at night and typically in low flow regimes. A single fish, believed to be a bull trout x brook trout hybrid, was observed in the Little Muddy Creek. Additional surveys are needed in the West Fork Klickitat and mainstem

  19. Adaptive Management of Bull Trout Populations in the Lemhi Basin

    Science.gov (United States)

    Peterson, James T.; Tyre, Andrew J.; Converse, Sarah J.; Bogich, Tiffany L.; Miller, Damien; Post van der Burg, Max; Thomas, Carmen; Thompson, Ralph J.; Wood, Jeri; Brewer, Donna; Runge, Michael C.

    2011-01-01

    The bull trout Salvelinus confluentus, a stream-living salmonid distributed in drainages of the northwestern United States, is listed as threatened under the Endangered Species Act because of rangewide declines. One proposed recovery action is the reconnection of tributaries in the Lemhi Basin. Past water use policies in this core area disconnected headwater spawning sites from downstream habitat and have led to the loss of migratory life history forms. We developed an adaptive management framework to analyze which types of streams should be prioritized for reconnection under a proposed Habitat Conservation Plan. We developed a Stochastic Dynamic Program that identified optimal policies over time under four different assumptions about the nature of the migratory behavior and the effects of brook trout Salvelinus fontinalis on subpopulations of bull trout. In general, given the current state of the system and the uncertainties about the dynamics, the optimal policy would be to connect streams that are currently occupied by bull trout. We also estimated the value of information as the difference between absolute certainty about which of our four assumptions were correct, and a model averaged optimization assuming no knowledge. Overall there is little to be gained by learning about the dynamics of the system in its current state, although in other parts of the state space reducing uncertainties about the system would be very valuable. We also conducted a sensitivity analysis; the optimal decision at the current state does not change even when parameter values are changed up to 75% of the baseline values. Overall, the exercise demonstrates that it is possible to apply adaptive management principles to threatened and endangered species, but logistical and data availability constraints make detailed analyses difficult.

  20. Wigwam River juvenile bull trout and fish habitat monitoring program: 2000 data report; TOPICAL

    International Nuclear Information System (INIS)

    The Wigwam River bull trout (Salvelinus confluentus) and fish habitat monitoring program is a trans-boundary initiative implemented by the British Columbia Ministry of Environment, Lands and Parks (MOE), in cooperation with Bonneville Power Administration (BPA). The Wigwam River is an important fisheries stream located in southeastern British Columbia that supports healthy populations of both bull trout and Westslope cutthroat trout (Figure 1.1). This river has been characterized as the single most important bull trout spawning stream in the Kootenay Region (Baxter and Westover 2000, Cope 1998). In addition, the Wigwam River supports some of the largest Westslope cutthroat trout (Oncorhynchus clarki lewisi) in the Kootenay Region. These fish are highly sought after by anglers (Westover 1999a, 1999b). Bull trout populations have declined in many areas of their range within Montana and throughout the northwest including British Columbia. Bull trout were blue listed as vulnerable in British Columbia by the B.C. Conservation Data Center (Cannings 1993) and although there are many healthy populations of bull trout in the East Kootenays they remain a species of special concern. Bull trout in the United States portion of the Columbia River were listed as threatened in 1998 under the Endangered Species Act by the U.S. Fish and Wildlife Service. The upper Kootenay River is within the Kootenai sub-basin of the Mountain Columbia Province, one of the eleven Eco-provinces that make up the Columbia River Basin. MOE applied for and received funding from BPA to assess and monitor the status of wild, native stocks of bull trout in tributaries to Lake Koocanusa (Libby Reservoir) and the upper Kootenay River. This task is one of many that was undertaken to ''Monitor and Protect Bull Trout for Koocanusa Reservoir'' (BPA Project Number 2000-04-00)

  1. Wigwam River Juvenile Bull Trout and Fish Habitat Monitoring Program : 2002 Data Report.

    Energy Technology Data Exchange (ETDEWEB)

    Cope, R.S. [Westslope Fisheries, Cranbrook, BC, Canada

    2003-03-01

    The Wigwam River bull trout (Salvelinus confluentus) and fish habitat monitoring program is a trans-boundary initiative implemented by the British Columbia Ministry of Water, Land, and Air Protection (MWLAP), in cooperation with Bonneville Power Administration (BPA). The Wigwam River is an important fisheries stream located in southeastern British Columbia that supports healthy populations of both bull trout and Westslope cutthroat trout (Figure 1). This river has been characterized as the single most important bull trout spawning stream in the Kootenay Region (Baxter and Westover 2000, Cope 1998). In addition, the Wigwam River supports some of the largest Westslope cutthroat trout (Oncorhynchus clarki lewisi) in the Kootenay Region. These fish are highly sought after by anglers (Westover 1999a, 1999b). Bull trout populations have declined in many areas of their range within Montana and throughout the northwest including British Columbia. Bull trout were blue listed as vulnerable in British Columbia by the B.C. Conservation Data Center (Cannings 1993) and although there are many healthy populations of bull trout in the East Kootenay they remain a species of special concern. Bull trout in the United States portion of the Columbia River were listed as threatened in 1998 under the Endangered Species Act by the U.S. Fish and Wildlife Service. The upper Kootenay River is within the Kootenai sub-basin of the Mountain Columbia Province, one of the eleven Eco-provinces that make up the Columbia River Basin. MWLAP applied for and received funding from BPA to assess and monitor the status of wild, native stocks of bull trout in tributaries to Lake Koocanusa (Libby Reservoir) and the upper Kootenay River. This task is one of many that were undertaken to ''Monitor and Protect Bull Trout for Koocanusa Reservoir'' (BPA Project Number 2000-04-00).

  2. Kootenai River Fisheries Investigations; Rainbow and Bull Trout Recruitment, 2002-2003 Annual Report.

    Energy Technology Data Exchange (ETDEWEB)

    Walters, Jody P.

    2004-01-01

    Rainbow trout Oncorhynchus mykiss provide the most important sport fishery in the Kootenai River, Idaho, but densities and catch rates are low. Low recruitment is one possible factor limiting the rainbow trout population. Bull trout Salvelinus confluentus also exist in the Kootenai River, but little is known about this population. Research reported here addresses the following objectives for the Kootenai River, Idaho: increase rainbow trout recruitment, identify rainbow and bull trout spawning tributaries and migration timing, establish baseline data on bull trout redd numbers in tributaries, and improve the rainbow trout population size structure. Six adult rainbow trout were moved to spawning habitat upstream of a potential migration barrier on Caboose Creek, but numbers of redds and age-0 out-migrants did not appear to increase relative to a reference stream. Measurements taken on the Moyie River indicated the gradient is inadequate to deliver suitable flows to a proposed rainbow trout spawning channel. Summer water temperatures measured in the Deep Creek drainage sometimes exceeded 24 C, higher than those reported as suitable for rainbow trout. Radio-tagged rainbow trout were located in Boulder Creek during the spring spawning season, and bull trout were located in the Moyie River and O'Brien Creek, Montana in the fall. Bull trout spawning migration timing was related to increases in Kootenai River flows. Bull trout redd surveys documented 19 redds on Boulder Creek and North and South Callahan creeks. Fall 2002 electrofishing showed that the Kootenai River rainbow trout proportional stock density was 54, higher than prior years when more liberal fishing regulations were in effect. Boulder Creek produces the highest number of age-0 rainbow trout out-migrants upstream of Bonners Ferry, but the survival rate of these out-migrants upon reaching the Kootenai River is unknown. Determining juvenile survival rates and sources of mortality could aid management

  3. Sprint swimming performance of wild bull trout (Salvelinus confluentus)

    Science.gov (United States)

    Mesa, M.G.; Phelps, J.; Weiland, L.K.

    2008-01-01

    We conducted laboratory experiments to determine the sprint swimming performance of wild juvenile and adult bull trout Salvelinus confluentus. Sprint swimming speeds were estimated using high-speed digital video analysis. Thirty two bull trout were tested in sizes ranging from about 10 to 31 cm. Of these, 14 fish showed at least one motivated, vigorous sprint. When plotted as a function of time, velocity of fish increased rapidly with the relation linear or slightly curvilinear. Their maximum velocity, or Vmax, ranged from 1.3 to 2.3 m/s, was usually achieved within 0.8 to 1.0 s, and was independent of fish size. Distances covered during these sprints ranged from 1.4 to 2.4 m. Our estimates of the sprint swimming performance are the first reported for this species and may be useful for producing or modifying fish passage structures that allow safe and effective passage of fish without overly exhausting them. ?? 2008 by the Northwest Scientific Association. All rights reserved.

  4. Temporary Restoration of Bull Trout Passage at Albeni Falls Dam, 2008 Progress Report.

    Energy Technology Data Exchange (ETDEWEB)

    Bellgraph, Brian J. [Pacific Northwest National Laboratory

    2009-03-31

    The goal of this project is to provide temporary upstream passage of bull trout around Albeni Falls Dam on the Pend Oreille River, Idaho. Our specific objectives are to capture fish downstream of Albeni Falls Dam, tag them with combination acoustic and radio transmitters, release them upstream of Albeni Falls Dam, and determine if genetic information on tagged fish can be used to accurately establish where fish are located during the spawning season. In 2007, radio receiving stations were installed at several locations throughout the Pend Oreille River watershed to detect movements of adult bull trout; however, no bull trout were tagged during that year. In 2008, four bull trout were captured downstream of Albeni Falls Dam, implanted with transmitters, and released upstream of the dam at Priest River, Idaho. The most-likely natal tributaries of bull trout assigned using genetic analyses were Grouse Creek (N = 2); a tributary of the Pack River, Lightning Creek (N = 1); and Rattle Creek (N = 1), a tributary of Lightning Creek. All four bull trout migrated upstream from the release site in Priest River, Idaho, were detected at monitoring stations near Dover, Idaho, and were presumed to reside in Lake Pend Oreille from spring until fall 2008. The transmitter of one bull trout with a genetic assignment to Grouse Creek was found in Grouse Creek in October 2008; however, the fish was not found. The bull trout assigned to Rattle Creek was detected in the Clark Fork River downstream from Cabinet Gorge Dam (approximately 13 km from the mouth of Lightning Creek) in September but was not detected entering Lightning Creek. The remaining two bull trout were not detected in 2008 after detection at the Dover receiving stations. This report details the progress by work element in the 2008 statement of work, including data analyses of fish movements, and expands on the information reported in the quarterly Pisces status reports.

  5. Bull Trout Life History, Genetics, Habitat Needs, and Limiting Fact in Central and Northeast Oregon. Annual Report 1999.

    Energy Technology Data Exchange (ETDEWEB)

    Hemmingsen, Alan R.; Gunckel, Stephanie L.; Howell, Philip J.

    2001-08-01

    This section describes work accomplished in 1999 that continued to address two objectives of this project. These objectives are (1) determine the distribution of juvenile and adult bull trout Salvelinus confluentus and habitats associated with that distribution, and (2) determine fluvial and resident bull trout life history patterns. Completion of these objectives is intended through studies of bull trout in the Grande Ronde, Walla Walla, and John Day basins. These basins were selected because they provide a variety of habitats, from relatively degraded to pristine, and bull trout populations were thought to vary from relatively depressed to robust. In all three basins we used radio telemetry to determine the seasonal movements of bull trout. In the John Day and Walla Walla basins we also used traps to capture migrant bull trout. With these traps, we intended to determine the timing of bull trout movements both upstream and downstream, determine the relative abundance, size and age of migrant fish, and capture bull trout to be implanted with radio transmitters. In the John Day basin, we captured adult and juvenile bull trout from the upper John Day River and its tributaries, Call Creek, Reynolds Creek, and Roberts Creek. In the Walla Walla basin, we captured adult and juvenile bull trout from Mill Creek.

  6. Development and evaluation of a bioenergetics model for bull trout

    Science.gov (United States)

    Mesa, Matthew G.; Welland, Lisa K.; Christiansen, Helena E.; Sauter, Sally T.; Beauchamp, David A.

    2013-01-01

    We conducted laboratory experiments to parameterize a bioenergetics model for wild Bull Trout Salvelinus confluentus, estimating the effects of body mass (12–1,117 g) and temperature (3–20°C) on maximum consumption (C max) and standard metabolic rates. The temperature associated with the highest C max was 16°C, and C max showed the characteristic dome-shaped temperature-dependent response. Mass-dependent values of C max (N = 28) at 16°C ranged from 0.03 to 0.13 g·g−1·d−1. The standard metabolic rates of fish (N = 110) ranged from 0.0005 to 0.003 g·O2·g−1·d−1 and increased with increasing temperature but declined with increasing body mass. In two separate evaluation experiments, which were conducted at only one ration level (40% of estimated C max), the model predicted final weights that were, on average, within 1.2 ± 2.5% (mean ± SD) of observed values for fish ranging from 119 to 573 g and within 3.5 ± 4.9% of values for 31–65 g fish. Model-predicted consumption was within 5.5 ± 10.9% of observed values for larger fish and within 12.4 ± 16.0% for smaller fish. Our model should be useful to those dealing with issues currently faced by Bull Trout, such as climate change or alterations in prey availability.

  7. Kootenai River Fisheries Investigations; Rainbow and Bull Trout Recruitment, 2003-2004 Annual Report.

    Energy Technology Data Exchange (ETDEWEB)

    Walters, Jody P.

    2005-08-01

    Rainbow trout Oncorhynchus mykiss provide the most important sport fishery in the Kootenai River, Idaho, but densities and catch rates are low. Low recruitment is one possible factor limiting the rainbow trout population. Bull trout Salvelinus confluentus also exist in the Kootenai River, but little is known about this population. Research reported here addresses the following objectives for the Kootenai River, Idaho: identify sources of rainbow and bull trout recruitment, monitor the rainbow trout population size structure to evaluate regulation changes initiated in 2002, and identify factors potentially limiting rainbow trout recruitment. A screw trap was used to estimate juvenile redband and bull trout out-migration from the Callahan Creek drainage, and electrofishing was conducted to estimate summer densities of bull trout rearing in the Idaho portion of the drainage. An estimated 1,132 juvenile redband trout and 68 juvenile bull trout out-migrated from Callahan Creek to the Kootenai River from April 7 through July 15, 2003. Densities of bull trout {ge} age-1 in North and South Callahan creeks ranged from 1.6 to 7.7 fish/100m{sup 2} in August. Bull trout redd surveys were conducted in North and South Callahan creeks, Boulder Creek, and Myrtle Creek. Thirty-two bull trout redds were located in North Callahan Creek, while 10 redds were found in South Callahan Creek. No redds were found in the other two streams. Modeling of culverts in the Deep Creek drainage identified two as upstream migration barriers, preventing rainbow trout from reaching spawning and rearing habitat. Water temperature monitoring in Deep Creek identified two sites where maximum temperatures exceeded those suitable for rainbow trout. Boulder Creek produces the most rainbow trout recruits to the Kootenai River in Idaho upstream of Deep Creek, but may be below carrying capacity for rearing rainbow trout due to nutrient limitations. Monthly water samples indicate Boulder Creek is nutrient limited

  8. Kootenai River fisheries investigations: rainbow and bull trout recruitment: annual progress report 1999; ANNUAL

    International Nuclear Information System (INIS)

    Our 1999 objectives were to determine sources of rainbow trout Oncorhynchus mykiss and bull trout Salvelinus confluentus spawning and recruitment in the Idaho reach of the Kootenai River. We used a rotary-screw trap to capture juvenile trout to determine age at out-migration and to estimate total out-migration from the Boundary Creek drainage to the Kootenai River. The out-migrant estimate for March through August 1999 was 1,574 (95% C. I.= 825-3,283) juvenile rainbow trout. Most juveniles out-migrated at age-2 and age-3. No out-migrating bull trout were caught. Five of 17 rainbow trout radio-tagged in Idaho migrated upstream into Montana waters during the spawning season. Five bull trout originally radio-tagged in O'Brien Creek, Montana in early October moved downstream into Idaho and British Columbia by mid-October. Annual angler exploitation for the rainbow trout population upstream of Bonners Ferry, Idaho was estimated to be 58%. Multi-pass depletion estimates for index reaches of Caboose, Curley, and Debt creeks showed 0.20, 0.01, and 0.13 rainbow trout juveniles/m(sup 2), respectively. We estimated rainbow trout (180-415 mm TL) standing stock of 1.6 kg/ha for the Hemlock Bar reach (29.4 ha) of the Kootenai River, similar to the 1998 estimate. Recruitment of juvenile rainbow and bull trout from Idaho tributaries is not sufficient to be the sole source of subsequent older fish in the mainstem Kootenai River. These populations are at least partly dependent on recruitment from Montana waters. The low recruitment and high exploitation rate may be indicators of a rainbow trout population in danger of further decline

  9. Kootenai River Fisheries Investigations; Rainbow and Bull Trout Recruitment, 1999 Annual Report.

    Energy Technology Data Exchange (ETDEWEB)

    Walters, Jody P.; Downs, Christopher C.

    2001-08-01

    Our 1999 objectives were to determine sources of rainbow trout Oncorhynchus mykiss and bull trout Salvelinus confluentus spawning and recruitment in the Idaho reach of the Kootenai River. We used a rotary-screw trap to capture juvenile trout to determine age at out-migration and to estimate total out-migration from the Boundary Creek drainage to the Kootenai River. The out-migrant estimate for March through August 1999 was 1,574 (95% C. I. = 825-3,283) juvenile rainbow trout. Most juveniles out-migrated at age-2 and age-3. No out-migrating bull trout were caught. Five of 17 rainbow trout radio-tagged in Idaho migrated upstream into Montana waters during the spawning season. Five bull trout originally radio-tagged in O'Brien Creek, Montana in early October moved downstream into Idaho and British Columbia by mid-October. Annual angler exploitation for the rainbow trout population upstream of Bonners Ferry, Idaho was estimated to be 58%. Multi-pass depletion estimates for index reaches of Caboose, Curley, and Debt creeks showed 0.20, 0.01, and 0.13 rainbow trout juveniles/m{sup 2}, respectively. We estimated rainbow trout (180-415 mm TL) standing stock of 1.6 kg/ha for the Hemlock Bar reach (29.4 ha) of the Kootenai River, similar to the 1998 estimate. Recruitment of juvenile rainbow and bull trout from Idaho tributaries is not sufficient to be the sole source of subsequent older fish in the mainstem Kootenai River. These populations are at least partly dependent on recruitment from Montana waters. The low recruitment and high exploitation rate may be indicators of a rainbow trout population in danger of further decline.

  10. Investigations of Bull Trout (Salvelinus Confluentus), Steelhead Trout (Oncorhynchus Mykiss), and Spring Chinook Salmon (O. Tshawytscha) Interactions in Southeast Washington Streams. Final Report 1992.

    Energy Technology Data Exchange (ETDEWEB)

    Underwood, Keith D.

    1995-01-01

    The goal of this two year study was to determine if supplementation with hatchery reared steelhead trout (Oncorhynchus mykiss) and spring chinook salmon (O. tshawytscha) negatively impacted wild native bull trout (Salvelinus confluentus) through competitive interactions. Four streams with varying levels of fish supplementation activity were sampled in Southeast Washington. Tasks performed during this study were population density, relative abundance, microhabitat utilization, habitat availability, diet analysis, bull trout spawning ground surveys, radio telemetry of adult bull trout, and growth analysis. Results indicate that bull trout overlapped geographically with the supplemented species in each of the study streams suggesting competition among species was possible. Within a stream, bull trout and the supplemented species utilized dissimilar microhabitats and microhabitat utilization by each species was the same among streams suggesting that there was no shifts in microhabitat utilization among streams. The diet of bull trout and O. mykiss significantly overlapped in each of the study streams. The stream most intensely supplemented contained bull trout with the slowest growth and the non-supplemented stream contained bull trout with the fastest growth. Conversely, the stream most intensely supplemented contain steelhead with the fastest growth and the non-supplemented stream contained steelhead with the slowest growth. Growth indicated that bull trout may have been negatively impacted from supplementation, although other factors may have contributed. At current population levels, and current habitat quantity and quality, no impacts to bull trout as a result of supplementation with hatchery reared steelhead trout and spring chinook salmon were detected. Project limitations and future research recommendations are discussed.

  11. Investigations of bull trout (Salvelinus confluentus), steelhead trout (Oncorhynchus mykiss), and spring chinook salmon (O. tshawytscha) interactions in Southeast Washington streams. Final report 1992; FINAL

    International Nuclear Information System (INIS)

    The goal of this two year study was to determine if supplementation with hatchery reared steelhead trout (Oncorhynchus mykiss) and spring chinook salmon (O. tshawytscha) negatively impacted wild native bull trout (Salvelinus confluentus) through competitive interactions. Four streams with varying levels of fish supplementation activity were sampled in Southeast Washington. Tasks performed during this study were population density, relative abundance, microhabitat utilization, habitat availability, diet analysis, bull trout spawning ground surveys, radio telemetry of adult bull trout, and growth analysis. Results indicate that bull trout overlapped geographically with the supplemented species in each of the study streams suggesting competition among species was possible. Within a stream, bull trout and the supplemented species utilized dissimilar microhabitats and microhabitat utilization by each species was the same among streams suggesting that there was no shifts in microhabitat utilization among streams. The diet of bull trout and O. mykiss significantly overlapped in each of the study streams. The stream most intensely supplemented contained bull trout with the slowest growth and the non-supplemented stream contained bull trout with the fastest growth. Conversely, the stream most intensely supplemented contain steelhead with the fastest growth and the non-supplemented stream contained steelhead with the slowest growth. Growth indicated that bull trout may have been negatively impacted from supplementation, although other factors may have contributed. At current population levels, and current habitat quantity and quality, no impacts to bull trout as a result of supplementation with hatchery reared steelhead trout and spring chinook salmon were detected. Project limitations and future research recommendations are discussed

  12. Investigations of bull trout (Salvelinus confluentus), steelhead trout (Oncorhynchus mykiss), and spring chinook salmon (O. tshawytscha) interactions in Southeast Washington streams. Final report 1992

    International Nuclear Information System (INIS)

    The goal of this two year study was to determine if supplementation with hatchery reared steelhead trout (Oncorhynchus mykiss) and spring chinook salmon (O. tshawytscha) negatively impacted wild native bull trout (Salvelinus confluentus) through competitive interactions. Four streams with varying levels of fish supplementation activity were sampled in Southeast Washington. Tasks performed during this study were population density, relative abundance, microhabitat utilization, habitat availability, diet analysis, bull trout spawning ground surveys, radio telemetry of adult bull trout, and growth analysis. Results indicate that bull trout overlapped geographically with the supplemented species in each of the study streams suggesting competition among species was possible. Within a stream, bull trout and the supplemented species utilized dissimilar microhabitats and microhabitat utilization by each species was the same among streams suggesting that there was no shifts in microhabitat utilization among streams. The diet of bull trout and O. mykiss significantly overlapped in each of the study streams. The stream most intensely supplemented contained bull trout with the slowest growth and the non-supplemented stream contained bull trout with the fastest growth. Conversely, the stream most intensely supplemented contain steelhead with the fastest growth and the non-supplemented stream contained steelhead with the slowest growth. Growth indicated that bull trout may have been negatively impacted from supplementation, although other factors may have contributed. At current population levels, and current habitat quantity and quality, no impacts to bull trout as a result of supplementation with hatchery reared steelhead trout and spring chinook salmon were detected. Project limitations and future research recommendations are discussed

  13. Bull Trout Life History, Genetics, Habitat Needs, and Limiting Factors in Central and Northeast Oregon, Annual Report 2000.

    Energy Technology Data Exchange (ETDEWEB)

    Hemmingsen, Alan R.; Gunckel, Stephanie L.; Sankovich, Paul M.; Howell, Philip J.

    2001-11-01

    This section describes work accomplished in 2000 that continued to address two objectives of this project. These objectives are (1) determine the distribution of juvenile and adult bull trout Salvelinus confluentus and habitats associated with that distribution, and (2) determine fluvial and resident bull trout life history patterns. Completion of these objectives is intended through studies of bull trout in the Grande Ronde, Walla Walla, and John Day basins. These basins were selected because they provide a variety of habitats, from relatively degraded to pristine, and bull trout populations were thought to vary from relatively depressed to robust. In all three basins we continued to monitor the movements of bull trout with radio transmitters applied in 1998 (Hemmingsen, Bellerud, Gunckel and Howell 2001) and 1999 (Hemmingsen, Gunckel and Howell 2001). No new radio transmitters were applied to bull trout of the upper John Day River subbasin, Mill Creek (Walla Walla Basin), or the Grande Ronde Basin in 2000. We did implant radio transmitters in two bull trout incidentally captured in the John Day River near the confluence of the North Fork John Day River. In Mill Creek, we used traps to capture migrant bull trout to obtain data for the third successive year in this stream. With these traps, we intended to determine the timing of bull trout movements both upstream and downstream, and to determine the relative abundance, size and age of migrant fish. Because we captured migrant bull trout with traps for three years in the upper John Day River and its tributaries (Hemmingsen, Bellerud, Buchanan, Gunckel, Shappart and Howell 2001; Hemmingsen, Bellerud, Gunckel and Howell 2001; Hemmingsen, Gunckel and Howell 2001) and traps were no longer needed to capture bull trout for radio-tagging, no traps were operated in the John Day Basin in 2000.

  14. Bull trout life history, genetics, habitat needs, and limiting fact in central and northeast Oregon, annual report 2000.; ANNUAL

    International Nuclear Information System (INIS)

    This section describes work accomplished in 2000 that continued to address two objectives of this project. These objectives are (1) determine the distribution of juvenile and adult bull trout Salvelinus confluentus and habitats associated with that distribution, and (2) determine fluvial and resident bull trout life history patterns. Completion of these objectives is intended through studies of bull trout in the Grande Ronde, Walla Walla, and John Day basins. These basins were selected because they provide a variety of habitats, from relatively degraded to pristine, and bull trout populations were thought to vary from relatively depressed to robust. In all three basins we continued to monitor the movements of bull trout with radio transmitters applied in 1998 (Hemmingsen, Bellerud, Gunckel and Howell 2001) and 1999 (Hemmingsen, Gunckel and Howell 2001). No new radio transmitters were applied to bull trout of the upper John Day River subbasin, Mill Creek (Walla Walla Basin), or the Grande Ronde Basin in 2000. We did implant radio transmitters in two bull trout incidentally captured in the John Day River near the confluence of the North Fork John Day River. In Mill Creek, we used traps to capture migrant bull trout to obtain data for the third successive year in this stream. With these traps, we intended to determine the timing of bull trout movements both upstream and downstream, and to determine the relative abundance, size and age of migrant fish. Because we captured migrant bull trout with traps for three years in the upper John Day River and its tributaries (Hemmingsen, Bellerud, Buchanan, Gunckel, Shappart and Howell 2001; Hemmingsen, Bellerud, Gunckel and Howell 2001; Hemmingsen, Gunckel and Howell 2001) and traps were no longer needed to capture bull trout for radio-tagging, no traps were operated in the John Day Basin in 2000

  15. Bull Trout Population Assessment in the White Salmon and Klickitat Rivers, Columbia River Gorge, Washington, 2001 Annual Report.

    Energy Technology Data Exchange (ETDEWEB)

    Thiesfeld, Steven L.; McPeak, Ronald H.; McNamara, Brian S. (Washington Department of Fish and Wildlife); Honanie, Isadore (Confederated Tribes and Bands, Yakama Nation)

    2002-01-01

    We utilized night snorkeling and single pass electroshocking to determine the presence or absence of bull trout Salvelinus confluentus in 26 stream reaches (3,415 m) in the White Salmon basin and in 71 stream reaches (9,005 m) in the Klickitat River basin during summer and fall 2001. We did not find any bull trout in the White Salmon River basin. In the Klickitat River basin, bull trout were found only in the West Fork Klickitat River drainage. We found bull trout in two streams not previously reported: Two Lakes Stream and an unnamed tributary to Fish Lake Stream (WRIA code number 30-0550). We attempted to capture downstream migrant bull trout in the West Fork Klickitat River by fishing a 1.5-m rotary screw trap at RM 4.3 from July 23 through October 17. Although we caught other salmonids, no bull trout were captured. The greatest limiting factor for bull trout in the West Fork Klickitat River is likely the small amount of available habitat resulting in a low total abundance, and the isolation of the population. Many of the streams are fragmented by natural falls, which are partial or complete barriers to upstream fish movement. To date, we have not been able to confirm that the occasional bull trout observed in the mainstem Klickitat River are migrating upstream into the West Fork Klickitat River.

  16. Evaluate Bull Trout Movements in the Tucannon and Lower Snake Rivers, 2002-2003 Annual Report.

    Energy Technology Data Exchange (ETDEWEB)

    Faler, Michael P. (US Fish and Wildlife Service, Idaho Fishery Resource Office, Ahsahka, ID); Mendel, Glen W.; Fulton, Carl (Washington Department of Fish and Wildlife, Fish Management Division, Dayton, WA)

    2004-04-01

    We collected 279 adult bull trout (Salvelinus confluentus) in the Tucannon River during the Spring and Fall of 2003. Passive Integrated Transponder (PIT) tags were inserted in 191 of them, and we detected existing PIT tags in an additional 31bull trout. Thirty five of these were also surgically implanted with radio-tags, and we monitored the movements of these fish throughout the year. Fourteen radio-tags were recovered shortly after tagging, and as a result, 21 remained in the river through December 31, 2003. Four bull trout that were radio-tagged in spring 2002 were known to survive and carry their tags through the spring and/or summer of 2003. One of these fish spent the winter near river mile (RM) 13.0; the other 3 over-wintered in the vicinity of the Tucannon Hatchery between RM 34 and 36. Twenty-one radio tags from bull trout tagged in 2002 were recovered during the spring and summer, 2003. These tags became stationary the winter of 2002/2003, and were recovered between RM 11 and 55. We were unable to recover the remaining 15 tags from 2002. During the month of July, radio-tagged bull trout exhibited a general upstream movement into the upper reaches of the Tucannon subbasin. We observed some downstream movements of radio-tagged bull trout in mid to late September and throughout October. By late November and early December, radio tagged bull trout were relatively stationary, and were distributed from the headwaters downstream to river mile 6.4, near Lower Monumental Pool. As in 2002, we did not conduct work associated with objectives 2, 3, or 4 of this study, because we were unable to monitor migratory movement of radio-tagged bull trout into the Federal hydropower system on the mainstem Snake River. Transmission tests of submerged ATS model F1830 radio-tags in Lower Granite Pool showed that audible detection and individual tag identification was possible at depths of 20 and 30 ft. Tests were conducted using an ATS R-4000 Receiver equipped with an &apos

  17. Evaluate Bull Trout Movements in the Tucannon and Lower Snake Rivers, 2001-2002 Annual Report.

    Energy Technology Data Exchange (ETDEWEB)

    Faler, Michael P. (US Fish and Wildlife Service, Idaho Fishery Resource Office, Ahsahka, ID); Mendel, Glen W.; Fulton, Carl (Washington Department of Fish and Wildlife, Fish Management Division, Dayton, WA)

    2003-06-01

    We collected, radio-tagged, and PIT-tagged 41 bull trout at the Tucannon River Hatchery trap from May 17, through June 14, 2002. An additional 65 bull trout were also collected and PIT tagged by June 24, at which time we ceased PIT tagging operations because water temperatures were reaching 16.0 C or higher on a regular basis. Six radio-tags were recovered shortly after tagging, and as a result, 35 remained in the river through November 30, 2002. During the month of July, radio-tagged bull trout exhibited a general upstream movement into the upper reaches of the Tucannon Subbasin. We began to observe some downstream movements of radio-tagged bull trout in mid to late September and throughout October. These movements appeared to be associated with post spawning migrations. As of November 30, radio tagged bull trout were relatively stationary, and distributed from the headwaters downstream to river mile 11.3, near Pataha Creek. None of the radio-tagged bull trout left the Tucannon Subbasin and entered the federal hydropower system on the mainstem Snake River. We conducted some initial transmission tests of submerged radio tags at depths of 25, 35, 45, and 55 ft. in Lower Monumental Pool to test our capability of detection at these depths. Equipment used included Lotek model MCFT-3A transmitters, an SRX 400 receiver, a 4 element Yagi antenna, and a Lotek ''H'' antenna. Test results indicated that depth transmission of these tags was poor; only the transmitter placed at 25 ft. was audibly detectable.

  18. Bull Trout life History, Genetics, Habitat Needs, and Limiting Factors in Central and Northeast Oregon, Annual Report 1995.

    Energy Technology Data Exchange (ETDEWEB)

    Hemmingsen, Alan R.; Buchanan, David V.; Howell, Philip J.

    1996-03-01

    To fulfill one objective of the present study, genetic characteristics of Oregon bull trout will be determined by analysis of mitochondrial and nuclear DNA. During 1995, the authors collected and sampled a total of 1,217 bull trout from 46 streams in the Columbia River Basin. DNA analysis of those samples will be conducted at University of Montana. They primarily sampled juvenile fish near natal areas to increase the likelihood of identifying discrete populations while minimizing risk of injury to large spawners. Fork lengths of all fish sampled ranged from 2.6 to 60.5 cm with a median of 12 cm. Eighty-four percent of all bull trout sampled were less than 19 cm while two percent were larger than 27 cm. Bull trout were collected by several methods, mostly by electrofishing. Eighty-six percent of all bull trout sampled were collected by electrofishing with a programmable waveform electrofisher. They observed injuries caused by electrofishing to 8% of that proportion. Based on preliminary analysis, no waveform combination used appeared less injurious than others. Highest voltages appeared less injurious than some that were lower. Frequency of electrofishing injury was significantly correlated to fork length over the range-from 4 to 26 cm. There were indications for substantial risk for such injury to bull trout larger than 26 cm. Other species found in association with bull trout included chinook salmon Oncorhynchus tshawytscha, mountain whitefish Prosopium williamsoni, rainbow trout Oncorhynchus mykiss, sculpins Cottus spp., cutthroat trout Oncorhynchus clarki, non-native brook trout Salvelinus fontinalis, and tailed frogs Ascaphus truei. Rainbow trout was the species most frequently associated with bull trout. No injury or mortality was observed for any of the associated species captured.

  19. Bull trout life history, genetics, habitat needs, and limiting factors in central and northeast Oregon, Annual Report 1995

    International Nuclear Information System (INIS)

    To fulfill one objective of the present study, genetic characteristics of Oregon bull trout will be determined by analysis of mitochondrial and nuclear DNA. During 1995, the authors collected and sampled a total of 1,217 bull trout from 46 streams in the Columbia River Basin. DNA analysis of those samples will be conducted at University of Montana. They primarily sampled juvenile fish near natal areas to increase the likelihood of identifying discrete populations while minimizing risk of injury to large spawners. Fork lengths of all fish sampled ranged from 2.6 to 60.5 cm with a median of 12 cm. Eighty-four percent of all bull trout sampled were less than 19 cm while two percent were larger than 27 cm. Bull trout were collected by several methods, mostly by electrofishing. Eighty-six percent of all bull trout sampled were collected by electrofishing with a programmable waveform electrofisher. They observed injuries caused by electrofishing to 8% of that proportion. Based on preliminary analysis, no waveform combination used appeared less injurious than others. Highest voltages appeared less injurious than some that were lower. Frequency of electrofishing injury was significantly correlated to fork length over the range-from 4 to 26 cm. There were indications for substantial risk for such injury to bull trout larger than 26 cm. Other species found in association with bull trout included chinook salmon Oncorhynchus tshawytscha, mountain whitefish Prosopium williamsoni, rainbow trout Oncorhynchus mykiss, sculpins Cottus spp., cutthroat trout Oncorhynchus clarki, non-native brook trout Salvelinus fontinalis, and tailed frogs Ascaphus truei. Rainbow trout was the species most frequently associated with bull trout. No injury or mortality was observed for any of the associated species captured

  20. Bull Trout Life History, Genetics, Habitat Needs, and Limiting Factors in Central and Northeast Oregon, Annual Report 2001.

    Energy Technology Data Exchange (ETDEWEB)

    Hemmingsen, Alan R.; Gunckel, Stephanie L.; Sankovich, Paul M.; Howell, Philip J.

    2002-12-01

    Bull trout Salvelinus confluentus exhibit a number of life history strategies. Stream-resident bull trout complete their life cycle in their natal tributaries. Migratory bull trout spawn in tributary streams where juvenile fish usually spend from one to four years before migrating to either a larger river (fluvial) or lake (adfluvial) where they rear before returning to the tributary stream to spawn (Fraley and Shepard 1989). These migratory forms occur where conditions allow movement from spawning locations to downstream waters that provide greater foraging opportunities (Dunham and Rieman 1999). Resident and migratory forms may occur together, and either form can produce resident or migratory offspring (Rieman and McIntyre 1993). The ability to migrate is important to the persistence of local bull trout populations (Rieman and McIntyre 1993). The identification of migratory corridors can help focus habitat protection efforts. Determining the life history form(s) that comprise local populations, the timing of seasonal movements, and the geographic extent of these movements are critical to bull trout protection and recovery efforts. This section describes work accomplished in 2001 that continued to address two objectives of this project. These objectives are (1) determine the distribution of juvenile and adult bull trout and habitats associated with that distribution, and (2) determine fluvial and resident bull trout life history patterns. Completion of these objectives is intended through studies of bull trout in the Grande Ronde, Walla Walla, and John Day basins. These basins were selected because they provide a variety of habitats, from relatively degraded to pristine, and bull trout populations were thought to vary from relatively depressed to robust. In the Grande Ronde and Walla Walla basins, we continued to monitor the movements of bull trout with radio transmitters applied in 1998 (Hemmingsen, Bellerud, Gunckel and Howell 2001) and 1999 (Hemmingsen, Gunckel

  1. Evaluate Bull Trout Movements in the Tucannon and Lower Snake Rivers, 2004 Annual Report.

    Energy Technology Data Exchange (ETDEWEB)

    Faler, Michael P. (US Fish and Wildlife Service, Idaho Fishery Resource Office, Ahsahka, ID); Mendel, Glen W.; Fulton, Carl (Washington Department of Fish and Wildlife, Fish Management Division, Dayton, WA)

    2005-11-01

    We sampled and released 313 bull trout (Salvelinus confluentus) from the Tucannon River in 2004. Passive Integrated Transponder (PIT) tags were inserted in 231 of these individuals, and we detected existing PIT tags in an additional 44 bull trout. Twenty-five of these were also surgically implanted with radio-tags, and we monitored the movements of these fish throughout the year. Ten bull trout that were radio-tagged in 2003 were known to survive and carry their tags through the spring of 2004. One of these fish outmigrated into the Snake River in the fall, and remained undetected until February, when it's tag was located near the confluence of Alkali Flat Creek and the Snake River. The remaining 9 fish spent the winter between Tucannon River miles 2.1 (Powers Road) and 36.0 (Tucannon Fish Hatchery). Seven of these fish retained their tags through the summer, and migrated to known spawning habitat prior to September 2004. During June and July, radio-tagged bull trout again exhibited a general upstream movement into the upper reaches of the Tucannon subbasin. As in past years, we observed some downstream movements of radio-tagged bull trout in mid to late September and throughout October, suggesting post spawning outmigrations. By late November and early December, radio tagged bull trout were relatively stationary, and were distributed from river mile 42 at Camp Wooten downstream to river mile 17, near the Highway 12 bridge. As in previous years, we did not collect data associated with objectives 2, 3, or 4 of this study, because we were unable to monitor migratory movement of radio-tagged bull trout into the vicinity of the hydropower dams on the main stem Snake River. Transmission tests of submerged Lotek model NTC-6-2 nano-tags in Lower Granite Pool showed that audible detection and individual tag identification was possible at depths of 20, 30, and 40 ft. We were able to maintain tag detection and code separation at all depths from both a boat and 200 ft

  2. Bull Trout Population and Habitat Surveys in the Middle Fork Willamette and McKenzie Rivers, Annual Report 2002.

    Energy Technology Data Exchange (ETDEWEB)

    Seals, Jason; Reis, Kelly

    2003-10-01

    Bull trout in the Willamette River Basin were historically distributed throughout major tributaries including the Middle Fork Willamette and McKenzie rivers. Habitat degradation, over-harvest, passage barriers, fish removal by rotenone, and hybridization and competition with non-native brook trout are all likely factors that have led to the decline of bull trout in the Willamette Basin (Ratliff and Howell 1992). The U.S. Fish and Wildlife Service listed the Columbia River bull trout population segment as Threatened under the federal Endangered Species Act in 1998. Four bull trout populations were isolated in the upper Willamette River following the construction of flood control dams on the South Fork McKenzie River, McKenzie River, and Middle Fork Willamette River that created Cougar, Trail Bridge, and Hills Creek reservoirs. Buchanan et al. (1997) described the population in the main stem McKenzie as 'of special concern', the South Fork McKenzie population as 'high risk of extinction', the population above Trail Bridge Reservoir as 'high risk of extinction', and bull trout in the Middle Fork Willamette as 'probably extinct'. Various management efforts such as strict angling regulations and passage improvement projects have been implemented to stabilize and rehabilitate bull trout habitat and populations in the McKenzie River over the past 10 years. Since 1997, bull trout fry from Anderson Creek on the upper McKenzie River have been transferred to the Middle Fork Willamette basin above Hills Creek Reservoir in an attempt to re-establish a reproducing bull trout population. This project was developed in response to concerns over the population status and management of bull trout in the McKenzie and Middle Fork Willamette Rivers by the Oregon Department of Fish and Wildlife during the early 1990s. The project was conducted under measure 9.3G(2) of the Columbia Basin Fish and Wildlife Program to monitor the status, life history

  3. Evaluation of the Life History of Native Salmonids in the Malheur River Basin; Cooperative Bull Trout/Redband Trout Research Project, 1999-2000 Annual Report.

    Energy Technology Data Exchange (ETDEWEB)

    Schwabe, Lawrence; Tiley, Mark (Burns Paiute Tribe, Department of Fish and Wildlife, Burns, OR); Perkins, Raymond R. (Oregon Department of Fish and Wildlife, Ontario, OR)

    2000-11-01

    The purpose of this study is to document the seasonal distribution of adult/sub-adult bull trout (Salvelinus confluentus) in the Malheur River basin. Due to the decline of bull trout in the Columbia Basin, the United States Fish and Wildlife Service listed bull trout as a threatened species in June 1998. Past land management activities; construction of dams; and fish eradication projects in the North Fork and Middle Fork Malheur River by poisoning have worked in concert to cumulatively impact native species in the Malheur Basin (Bowers et. al. 1993). Survival of the remaining bull trout populations is severely threatened (Buchanan 1997). 1999 Research Objects are: (1) Document the migratory patterns of adult/sub-adult bull trout in the North Fork Malheur River; (2) Determine the seasonal bull trout use of Beulah Reservoir and bull trout entrainment; and (3) Timing and location of bull trout spawning in the North Fork Malheur River basin. The study area includes the Malheur basin from the mouth of the Malheur River located near Ontario, Oregon to the headwaters of the North Fork Malheur River (Map 1). All fish collected and most of the telemetry effort was done on the North Fork Malheur River subbasin (Map 2). Fish collection was conducted on the North Fork Malheur River at the tailwaters of Beulah Reservoir (RK 29), Beulah Reservoir (RK 29-RK 33), and in the North Fork Malheur River at Crane Crossing (RK 69) to the headwaters of the North Fork Malheur. Radio telemetry was done from the mouth of the Malheur River in Ontario, Oregon to the headwaters of the North Fork Malheur. This report will reflect all migration data collected from 3/1/99 to 12/31/99.

  4. Assessing the feasibility of native fish reintroductions: a framework and example applied to bull trout in the Clackamas River, Oregon

    Science.gov (United States)

    Dunham, Jason B.; Gallo, Kirsten

    2008-01-01

    In a species conservation context, translocations can be an important tool, but they frequently fail to successfully establish new populations. We consider the case of reintroductions for bull trout (Salvelinus confluentus), a federally-listed threatened species with a widespread but declining distribution in western North America. Our specific objectives in this work were to: 1) develop a general framework for assessing the feasibility of reintroduction for bull trout, 2) provide a detailed example of implementing this framework to assess the feasibility of reintroducing bull trout in the Clackamas River, Oregon, and 3) discuss the implications of this effort in the more general context of fish reintroductions as a conservation tool. Review of several case histories and our assessment of the Clackamas River suggest that an attempt to reintroduce bull trout could be successful, assuming adequate resources are committed to the subsequent stages of implementation, monitoring, and evaluation.

  5. An ecological risk assessment of the acute and chronic toxicity of the herbicide picloram to the threatened bull trout (salvelinus confluentus) and the rainbow trout (onchorhyncus mykiss)

    Science.gov (United States)

    Fairchild, J.F.; Feltz, K.P.; Sappington, L.C.; Allert, A.L.; Nelson, K.J.; Valle, J.

    2009-01-01

    We conducted acute and chronic toxicity studies of the effects of picloram acid on the threatened bull trout (Salvelinus confluentus) and the standard coldwater surrogate rainbow trout (Oncorhynchus mykiss). Juvenile fish were chronically exposed for 30 days in a proportional flow-through diluter to measured concentrations of 0, 0.30, 0.60, 1.18, 2.37, and 4.75 mg/L picloram. No mortality of either species was observed at the highest concentration. Bull trout were twofold more sensitive to picloram (30-day maximum acceptable toxic concentration of 0.80 mg/L) compared to rainbow trout (30-day maximum acceptable toxic concentration of 1.67 mg/L) based on the endpoint of growth. Picloram was acutely toxic to rainbow trout at 36 mg/L (96-h ALC50). The acute:chronic ratio for rainbow trout exposed to picloram was 22. The chronic toxicity of picloram was compared to modeled and measured environmental exposure concentrations (EECs) using a four-tiered system. The Tier 1, worst-case exposure estimate, based on a direct application of the current maximum use rate (1.1 kg/ha picloram) to a standardized aquatic ecosystem (water body of 1-ha area and 1-m depth), resulted in an EEC of 0.73 mg/L picloram and chronic risk quotients of 0.91 and 0.44 for bull trout and rainbow trout, respectively. Higher-tiered exposure estimates reduced chronic risk quotients 10-fold. Results of this study indicate that picloram, if properly applied according to the manufacturer's label, poses little risk to the threatened bull trout or rainbow trout in northwestern rangeland environments on either an acute or a chronic basis. ?? 2008 Springer Science+Business Media, LLC.

  6. Evaluation of Bull Trout Movements in the Tucannon and Lower Snake Rivers, 2002-2006 Project Completion Summary.

    Energy Technology Data Exchange (ETDEWEB)

    Faler, Michael P. [U.S. Fish and Wildlife Service; Mendel, Glen; Fulton, Carl [Washington Department of Fish and Wildlife

    2008-11-20

    The Columbia River Distinct Population Segment of bull trout (Salvelinus confluentus) was listed as threatened under the Endangered Species Act in 1998. One of the identified major threats to the species is fragmentation resulting from dams on over-wintering habitats of migratory subpopulations. A migratory subgroup in the Tucannon River appeared to utilize the Snake River reservoirs for adult rearing on a seasonal basis. As a result, a radio telemetry study was conducted on this subgroup from 2002-2006, to help meet Reasonable and Prudent Measures, and Conservation Recommendations associated with the lower Snake River dams in the FCRPS Biological Opinion, and to increase understanding of bull trout movements within the Tucannon River drainage. We sampled 1,109 bull trout in the Tucannon River; 124 of these were surgically implanted with radio tags and PIT tagged, and 681 were only PIT tagged. The remaining 304 fish were either recaptures, or released unmarked. Bull trout seasonal movements within the Tucannon River were similar to those described for other migratory bull trout populations. Bull trout migrated upstream in spring and early summer to the spawning areas in upper portions of the Tucannon River watershed. They quickly moved off the spawning areas in the fall, and either held or continued a slower migration downstream through the winter until early the following spring. During late fall and winter, bull trout were distributed in the lower half of the Tucannon River basin, down to and including the mainstem Snake River below Little Goose Dam. We were unable to adequately radio track bull trout in the Snake River and evaluate their movements or interactions with the federal hydroelectric dams for the following reasons: (1) none of our radio-tagged fish were detected attempting to pass a Snake River dam, (2) our radio tags had poor transmission capability at depths greater than 12.2 m, and (3) the sample size of fish that actually entered the Snake River

  7. Influences of body size and environmental factors on autumn downstream migration of bull trout in the Boise River, Idaho

    Science.gov (United States)

    Monnot, L.; Dunham, J.B.; Hoem, T.; Koetsier, P.

    2008-01-01

    Many fishes migrate extensively through stream networks, yet patterns are commonly described only in terms of the origin and destination of migration (e.g., between natal and feeding habitats). To better understand patterns of migration in bull trout,Salvelinus confluentus we studied the influences of body size (total length [TL]) and environmental factors (stream temperature and discharge) on migrations in the Boise River basin, Idaho. During the autumns of 2001-2003, we tracked the downstream migrations of 174 radio-tagged bull trout ranging in size from 21 to 73 cm TL. The results indicated that large bull trout (>30 cm) were more likely than small fish to migrate rapidly downstream after spawning in headwater streams in early autumn. Large bull trout also had a higher probability of arriving at the current terminus of migration in the system, Arrowrock Reservoir. The rate of migration by small bull trout was more variable and individuals were less likely to move into Arrowrock Reservoir. The rate of downstream migration by all fish was slower when stream discharge was greater. Temperature was not associated with the rate of migration. These findings indicate that fish size and environmentally related changes in behavior have important influences on patterns of migration. In a broader context, these results and other recent work suggest, at least in some cases, that commonly used classifications of migratory behavior may not accurately reflect the full range of behaviors and variability among individuals (or life stages) and environmental conditions. ?? Copyright by the American Fisheries Society 2008.

  8. Assessing the impacts of river regulation on native bull trout (Salvelinus confluentus) and westslope cutthroat trout (Oncorhynchus clarkii lewisi) habitats in the upper Flathead River, Montana, USA

    Science.gov (United States)

    Muhlfeld, Clint C.; Jones, Leslie A.; Kotter, D.; Miller, William J.; Geise, Doran; Tohtz, Joel; Marotz, Brian

    2012-01-01

    Hungry Horse Dam on the South Fork Flathead River, Montana, USA, has modified the natural flow regimen for power generation, flood risk management and flow augmentation for anadromous fish recovery in the Columbia River. Concern over the detrimental effects of dam operations on native resident fishes prompted research to quantify the impacts of alternative flow management strategies on threatened bull trout (Salvelinus confluentus) and westslope cutthroat trout (Oncorhynchus clarkii lewisi) habitats. Seasonal and life‐stage specific habitat suitability criteria were combined with a two‐dimensional hydrodynamic habitat model to assess discharge effects on usable habitats. Telemetry data used to construct seasonal habitat suitability curves revealed that subadult (fish that emigrated from natal streams to the river system) bull trout move to shallow, low‐velocity shoreline areas at night, which are most sensitive to flow fluctuations. Habitat time series analyses comparing the natural flow regimen (predam, 1929–1952) with five postdam flow management strategies (1953–2008) show that the natural flow conditions optimize the critical bull trout habitats and that the current strategy best resembles the natural flow conditions of all postdam periods. Late summer flow augmentation for anadromous fish recovery, however, produces higher discharges than predam conditions, which reduces the availability of usable habitat during this critical growing season. Our results suggest that past flow management policies that created sporadic streamflow fluctuations were likely detrimental to resident salmonids and that natural flow management strategies will likely improve the chances of protecting key ecosystem processes and help to maintain and restore threatened bull trout and westslope cutthroat trout populations in the upper Columbia River Basin.

  9. A framework for assessing the feasibility of native fish conservation translocations: Applications to threatened bull trout

    Science.gov (United States)

    Galloway, Benjamin T.; Muhlfeld, Clint C.; Guy, Christopher S.; Downs, Christopher C.; Fredenberg, Wade A.

    2016-01-01

    There is an urgent need to consider more aggressive and direct interventions for the conservation of freshwater fishes that are threatened by invasive species, habitat loss, and climate change. Conservation introduction (moving a species outside its indigenous range to other areas where conditions are predicted to be more suitable) is one type of translocation strategy that fisheries managers can use to establish new conservation populations in areas of refugia. To date, however, there are few examples of successful conservation-based introductions. Many attempts fail to establish new populations—in part because environmental factors that might influence success are inadequately evaluated before the translocation is implemented. We developed a framework to assess the feasibility of rescuing threatened fish populations through translocation into historically unoccupied stream and lake habitats. The suitability of potential introduction sites was evaluated based on four major components: the recipient habitat, recipient community, donor population, and future threats. Specific questions were then developed to evaluate each major component. The final assessment was based on a scoring system that addressed each question by using criteria developed from characteristics representative of highly suitable habitats and populations. This framework was used to evaluate the proposed within-drainage translocation of three Bull Trout Salvelinus confluentus populations in Glacier National Park, Montana. Our results indicated that within-drainage translocation is a feasible strategy for conserving locally adapted populations of Bull Trout through the creation of new areas of refugia in Glacier National Park. The framework provides a flexible platform that can help managers make informed decisions for moving threatened fishes into new areas of refugia for conservation and recovery programs.

  10. Bull Trout (Salvelinus Confluentus) Population and Habitat Surveys in the McKenzie and Middle Fork Willamette Basins, 2000 Annual Report.

    Energy Technology Data Exchange (ETDEWEB)

    Taylor, Greg

    2000-11-28

    Prior to 1978, Dolly Varden Salvelinus malma were classified into an anadromous and interior form. Cavender (1978) classified the interior form as a distinct species, Salvelinus confluentus, the bull trout. Bull trout are large char weighing up to 18 kg and growing to over one meter in length (Goetz 1989). They are distinguished by a broad flat head, large downward curving maxillaries that extend beyond the eye, a well developed fleshy knob and a notch in the lower terminus of the snout, and light colored spots normally smaller than the pupil of the eye (Cavender 1978). Bull trout are found throughout northwestern North America from lat. 41{sup o}N to lat. 60{sup o}N. In Oregon, bull trout were once distributed throughout 12 basins in the Klamath and Columbia River systems including the Clackamas, Santiam, McKenzie and Middle Fork Willamette sub-basins west of the Cascades (Buchanan et al. 1997). However, it is believed bull trout have been extirpated from west of the Cascades with the exception of the McKenzie sub-basin. Before 1963, bull trout in the McKenzie sub-basin were a contiguous population from the mouth to Tamolitch Falls. Following the construction of Cougar and Trail Bridge Reservoirs there are three isolated populations: (1) mainstem McKenzie and tributaries from the mouth to Trail Bridge Reservoir. (2) mainstem McKenzie and tributaries above Trail Bridge Reservoir to Tamolitch Falls. (3) South Fork McKenzie and tributaries above Cougar Reservoir. The study area includes the three aforementioned McKenzie populations, and the Middle Fork Willamette and tributaries above Hills Creek Reservoir. We monitored bull trout populations in the McKenzie and Middle Fork Willamette basins using a combination of sampling techniques including: spawning surveys, standard pool counts, juvenile trapping, radio tracking, electronic fish counters, and a modified Hankin and Reeves protocol to estimate juvenile abundance and density. In addition, we continued to

  11. Temperature-mediated differences in bacterial kidney disease expression and survival in Renibacterium salmoninarum-challenged bull trout and other salmonids

    Science.gov (United States)

    Jones, D.T.; Moffitt, C.M.; Peters, K.K.

    2007-01-01

    Resource managers considering restoration and reconnection of watersheds to protect and enhance threatened populations of bull trout Salvelinus confluentus have little information about the consequences of bacterial kidney disease (BKD) caused by Renibacterium salmoninarum. To better understand the response of bull trout to R. salmoninarum challenge, we conducted several laboratory experiments at two water temperatures. The extent, severity, and lethality of BKD in bull trout were compared with those of similarly challenged lake trout S. namaycush, Arctic char S. alpinus, Chinook salmon Oncorhynchus tshawytscha, and rainbow trout O. mykiss. The lethal dose of bacterial cells necessary to induce 50% mortality (LD50) was 10-fold lower at the 15??C challenge than at the 9??C challenge. Of the species tested, bull trout were relatively resistant to BKD, Arctic char were the most susceptible among Salvelinus species, and Chinook salmon were the most susceptible among Oncorhynchus species tested. Mean time to death was more rapid for all fish tested at 15??C than for fish challenged at 9??C. These results suggest that infection of bull trout with BKD likely poses a low risk to successful restoration of threatened populations. ?? Copyright by the American Fisheries Society 2007.

  12. Bull Trout (Salvelinus Confluentus) Population and Habitat Surveys in the McKenzie and Middle Fork Willamette Basins, 2001 Annual Report.

    Energy Technology Data Exchange (ETDEWEB)

    Taylor, Greg

    2003-02-01

    Prior to 1978, bull trout were commonly known as dolly varden (Salvelinus malma) and were classified into an anadromous and interior form. Cavender (1978) described the interior form as a distinct species, classifying it as Salvelinus confluentus, the bull trout. Bull trout are large char weighing up to 18 kg and growing to over one meter in length (Goetz 1994). They are distinguished by a broad flat head, large downward curving maxillaries that extend beyond the eye, a fleshy knob and a notch in the lower terminus of the snout, and light colored spots normally smaller than the pupil of the eye (Cavender 1978). Bull trout are found throughout northwestern North America from latitude 41{sup o}N to 60{sup o}N. In Oregon, bull trout were once distributed throughout 12 basins in the Klamath and Columbia River systems including the Clackamas, Santiam, McKenzie and Middle Fork Willamette subbasins west of the Cascades (Buchanan et al. 1997). However, it is likely that bull trout have been extirpated from west of the Cascades with the exception of the McKenzie sub-basin. McKenzie River bull trout were a contiguous population from the mouth to Tamolitch Falls prior to 1963. Three populations were isolated following the construction of Cougar and Trail Bridge Reservoirs which include the mainstem McKenzie and tributaries from the mouth to Trail Bridge Reservoir, mainstem McKenzie and tributaries above Trail Bridge Reservoir to Tamolitch Falls, and the South Fork McKenzie and tributaries above Cougar Reservoir. On June 10, 1998 the U.S. Fish and Wildlife Service (USFWS) listed the Columbia River bull trout population segment as Threatened under the federal Endangered Species Act and Buchanan et al. (1997) listed the bull trout population in the mainstem McKenzie as ''of special concern'', the South Fork McKenzie population as ''high risk of extinction,'' and the population above Trail Bridge Reservoir as ''high risk of

  13. Evaluation of the Life History of Native Salmonids in the Malheur River Basin; Cooperative Bull Trout/Redband Trout Research Project, 2002-2003 Annual Report.

    Energy Technology Data Exchange (ETDEWEB)

    Miller, Alan; Soupir, Jim (US Forest Service, Prairie City Ranger District, Prairie City, OR); Schwabe, Lawrence (Burns Paiute Tribe, Department of Fish and Wildlife, Burns, OR)

    2003-08-01

    The Malheur River is a 306-kilometer tributary to the Snake River, which drains 12,950 square kilometers. The Malheur River originates in the Blue Mountains and flows into the Snake River near Ontario, Oregon. The climate of the basin is characterized by hot dry summers, occasionally exceeding 38 C, and cold winters that may drop below -29 C. Average annual precipitation is 30 centimeters in the lower reaches. Wooded areas consist primarily of mixed fir and pine forest in the higher elevations. Sagebrush and grass communities dominate the flora in the lower elevations. Efforts to document salmonid life histories, water quality, and habitat conditions have continued in fiscal year 2002. Bull trout Salvelinus confluentus are considered to be cold water species and are temperature-dependant. Due to the interest of bull trout from various state and Federal agencies, a workgroup was formed to develop project objectives related to bull trout. Table 1 lists individuals that participated in the 2002 work group. This report will reflect work completed during the Bonneville Power Administration contract period starting April 1, 2002, and ending March 31, 2003. All tasks were conducted within this timeframe, and a more detailed timeframe may be referred to in each individual report.

  14. Assessing the feasibility of native fish reintroductions: a framework applied to threatened bull trout

    Science.gov (United States)

    Dunham, Jason B.; Gallo, Kirsten; Shively, Dan; Allen, Chris; Goehring, Brad

    2011-01-01

    Translocations to recover native fishes have resulted in mixed success. One reason for the failure of these actions is inadequate assessments of their feasibility prior to implementation. Here, we provide a framework developed to assess the feasibility of one type of translocation-reintroduction. The framework was founded on two simple components of feasibility: the potential for recipient habitats to support a reintroduction and the potential of available donor populations to support a reintroduction. Within each component, we developed a series of key questions. The final assessment was based on a scoring system that incorporated consideration of uncertainty in available information. The result was a simple yet transparent system for assessing reintroduction feasibility that can be rapidly applied in practice. We applied this assessment framework to the potential reintroduction of threatened bull trout Salvelinus confluentus into the Clackamas River, Oregon. In this case, the assessment suggested that the degree of feasibility for reintroduction was high based on the potential of recipient habitats and available donor populations. The assessment did not provide a comprehensive treatment of all possible factors that would drive an actual decision to implement a reintroduction,

  15. Evaluation of the Life History of Native Salmonids in the Malheur River Basin; Cooperative Bull Trout/Redband Trout Research Project, 2000-2001 Annual Report.

    Energy Technology Data Exchange (ETDEWEB)

    Gonzales, Dan; Schwabe, Lawrence; Wenick, Jess (Burns Paiute Tribe, Department of Fish and Wildlife, Burns, OR)

    2001-08-01

    The Malheur basin lies within southeastern Oregon. The Malheur River is a tributary to the Snake River, entering at about River Kilometer (RK) 595. The hydrological drainage area of the Malheur River is approximately 12,950 km{sup 2} and is roughly 306 km in length. The headwaters of the Malheur River originate in the Blue Mountains at elevations of 6,500 to 7,500 feet, and drops to an elevation of 2000 feet at the confluence with the Snake River near Ontario, Oregon. The climate of the Malheur basin is characterized by hot dry summers, occasionally exceeding 38 C and cold winters that may drop below -29 C. Average annual precipitation is 300 centimeters and ranges from 100 centimeters in the upper mountains to less than 25 centimeters in the lower reaches (Gonzalez 1999). Wooded areas consist primarily of mixed fir and pine forest in the higher elevations. Sagebrush and grass communities dominate the flora in the lower elevations. Efforts to document salmonid life histories, water quality, and habitat conditions have continued in fiscal year 2000. The Burns Paiute Tribe (BPT), United States Forest Service (USFS), and Oregon Department of Fish and Wildlife (ODFW), have been working cooperatively to achieve this common goal. Bull trout ''Salvenlinus confluentus'' have specific environmental requirements and complex life histories making them especially susceptible to human activities that alter their habitat (Howell and Buchanan 1992). Bull trout are considered to be a cold-water species and are temperature dependent. This presents a challenge for managers, biologists, and private landowners in the Malheur basin. Because of the listing of bull trout under the Endangered Species Act as threatened and the current health of the landscape, a workgroup was formed to develop project objectives related to bull trout. This report will reflect work completed during the Bonneville Power contract period starting 1 April 2000 and ending 31 March 2001. The

  16. Extensive feeding on sockeye salmon Oncorhynchus nerka smolts by bull trout Salvelinus confluentus during initial outmigration into a small, unregulated and inland British Columbia river.

    Science.gov (United States)

    Furey, N B; Hinch, S G; Lotto, A G; Beauchamp, D A

    2015-01-01

    Stomach contents were collected and analysed from 22 bull trout Salvelinus confluentus at the edge of the Chilko Lake and Chilko River in British Columbia, Canada, during spring outmigration of sockeye salmon Oncorhynchus nerka smolts. Twenty of the 22 (>90%) stomachs contained prey items, virtually all identifiable prey items were outmigrant O. nerka smolts and stomach contents represented a large portion (0·0-12·6%) of estimated S. confluentus mass. The results demonstrate nearly exclusive and intense feeding by S. confluentus on outmigrant smolts, and support recent telemetry observations of high disappearance rates of O. nerka smolts leaving large natural lake systems prior to entering high-order unregulated river systems. PMID:25494841

  17. Enumerating molecules.

    Energy Technology Data Exchange (ETDEWEB)

    Visco, Donald Patrick, Jr. (, . Tennessee Technological University, Cookeville, TN); Faulon, Jean-Loup Michel; Roe, Diana C.

    2004-04-01

    This report is a comprehensive review of the field of molecular enumeration from early isomer counting theories to evolutionary algorithms that design molecules in silico. The core of the review is a detail account on how molecules are counted, enumerated, and sampled. The practical applications of molecular enumeration are also reviewed for chemical information, structure elucidation, molecular design, and combinatorial library design purposes. This review is to appear as a chapter in Reviews in Computational Chemistry volume 21 edited by Kenny B. Lipkowitz.

  18. Bimonotone enumeration

    Science.gov (United States)

    Eisermann, Michael

    2009-03-01

    Solutions of a diophantine equation f(a,b) = g(c,d) , with a,b,c,d in some finite range, can be efficiently enumerated by sorting the values of f and g in ascending order and searching for collisions. This article considers functions f \\colon mathbb{N} times mathbb{N}to mathbb{Z} that are bimonotone in the sense that f(a,b) le f(a',b') whenever a le a' and b le b' . A two-variable polynomial with non-negative coefficients is a typical example. The problem is to efficiently enumerate all pairs (a,b) such that the values f(a,b) appear in increasing order. We present an algorithm that is memory-efficient and highly parallelizable. In order to enumerate the first n values of f , the algorithm only builds up a priority queue of length at most sqrt{2n}+1 . In terms of bit-complexity this ensures that the algorithm takes time O( n log^2 n ) and requires memory O( sqrt{n} log n ) , which considerably improves on the memory bound Theta( n log n ) provided by a naive approach, and extends the semimonotone enumeration algorithm previously considered by R.L.Ekl and D.J.Bernstein.

  19. Bull trout in the Boundary System: managing connectivity and the feasibility of a reintroduction in the lower Pend Oreille River, northeastern Washington

    Science.gov (United States)

    Dunham, Jason B.; Taylor, Eric B.; Allendorf, Fred W.

    2014-01-01

    Many of the World’s rivers are influenced by large dams (>15 m high) most of which have fragmented formerly continuous habitats, and significantly altered fish passage, natural flow, temperature, and sediment fluxes (Nilsson and others, 2005; Arthington, 2012; Liermann and others, 2012). In the Pacific Northwest, dams on major rivers have been a major focus for fishery managers, primarily in regard to passage of anadromous salmonids (principally Pacific salmon and steelhead trout [Oncorhynchus mykiss], for example, Ferguson and others, 2011), but more recently other species, such as Pacific lamprey (Entosphenus tridentatus) and resident (non-anadromous) salmonids, are receiving more attention (Neraas and Spruell, 2001; Moser and others, 2002; Muhlfeld and others, 2012). In the case of resident salmonids, fish can adopt a wide range of migratory behaviors that often bring them into mainstem rivers where they can come into direct contact with large dams. When this occurs, some of the most important direct effects of dams on salmonids include barriers to upstream and downstream movement and mortality associated with entrainment within the dam or spill over dams. Biologically, these direct impacts can lead to (1) disruption of natural historical (pre-dam) genetic and demographic connectivity among local populations, (2) loss of access to historically used migratory destinations, (3) loss of individuals to the population through mortality associated with entrainment.

  20. Red Bull Crisis

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    Additives make Red Bull the first company to test China’s new Food Safety Law "Drink Red Bull when you feel sleepy or tired" is a famous advertising slogan well-known to Chinese. But a recent German

  1. Role of climate and invasive species in structuring trout distributions in the interior Columbia River Basin, USA

    Science.gov (United States)

    Wenger, Seth J.; Isaak, Daniel J.; Dunham, Jason B.; Fausch, Kurt D.; Luce, Charles H.; Neville, Helen M.; Rieman, Bruce E.; Young, Michael K.; Nagel, David E.; Horan, Dona L.; Chandler, Gwynne L.

    2011-01-01

    Recent and projected climate warming trends have prompted interest in impacts on coldwater fishes. We examined the role of climate (temperature and flow regime) relative to geomorphology and land use in determining the observed distributions of three trout species in the interior Columbia River Basin, USA. We considered two native species, cutthroat trout (Oncorhynchus clarkii) and bull trout (Salvelinus confluentus), as well as nonnative brook trout (Salvelinus fontinalis). We also examined the response of the native species to the presence of brook trout. Analyses were conducted using multilevel logistic regression applied to a geographically broad database of 4165 fish surveys. The results indicated that bull trout distributions were strongly related to climatic factors, and more weakly related to the presence of brook trout and geomorphic variables. Cutthroat trout distributions were weakly related to climate but strongly related to the presence of brook trout. Brook trout distributions were related to both climate and geomorphic variables, including proximity to unconfined valley bottoms. We conclude that brook trout and bull trout are likely to be adversely affected by climate warming, whereas cutthroat trout may be less sensitive. The results illustrate the importance of considering species interactions and flow regime alongside temperature in understanding climate effects on fish.

  2. Quantum shadow enumerators

    CERN Document Server

    Rains, E M

    1996-01-01

    In a recent paper [quant-ph/9610040], Shor and Laflamme define two ``weight enumerators'' for quantum error correcting codes, connected by a MacWilliams transform, and use them to give a linear-programming bound for quantum codes. We extend their work by introducing another enumerator, based on the classical theory of shadow codes, that tightens their bounds significantly. In particular, nearly all of the codes known to be optimal among additive quantum codes (codes derived from orthogonal geometry ([quant-ph/9608006])) can be shown to be optimal among all quantum codes. We also use the shadow machinery to extend a bound on self-dual additive codes (E. Rains, N. Sloane, manuscript in preparation) to general codes, obtaining as a consequence that any pure code of length n can correct at most floor((n+1)/6) errors.

  3. Exact enumeration of self-avoiding walks

    OpenAIRE

    Schram, Raoul D.; Barkema, Gerard T.; Bisseling, Rob H.

    2011-01-01

    A prototypical problem on which techniques for exact enumeration are tested and compared is the enumeration of self-avoiding walks. Here, we show an advance in the methodology of enumeration, making the process thousands or millions of times faster. This allowed us to enumerate self-avoiding walks on the simple cubic lattice up to a length of 36 steps.

  4. Analysis and enumeration algorithms for biological graphs

    CERN Document Server

    Marino, Andrea

    2015-01-01

    In this work we plan to revise the main techniques for enumeration algorithms and to show four examples of enumeration algorithms that can be applied to efficiently deal with some biological problems modelled by using biological networks: enumerating central and peripheral nodes of a network, enumerating stories, enumerating paths or cycles, and enumerating bubbles. Notice that the corresponding computational problems we define are of more general interest and our results hold in the case of arbitrary graphs. Enumerating all the most and less central vertices in a network according to their eccentricity is an example of an enumeration problem whose solutions are polynomial and can be listed in polynomial time, very often in linear or almost linear time in practice. Enumerating stories, i.e. all maximal directed acyclic subgraphs of a graph G whose sources and targets belong to a predefined subset of the vertices, is on the other hand an example of an enumeration problem with an exponential number of solutions...

  5. Conjectured enumeration of Vassiliev invariants

    CERN Document Server

    Broadhurst, D J

    1997-01-01

    These conjectures are motivated by successful enumerations of irreducible Euler sums. Predictions for $\\beta_{15,10}$, $\\beta_{16,12}$ and $\\beta_{19,16}$ suggest that the action of sl and osp Lie algebras, on baguette diagrams with ladder insertions, fails to detect an invariant in each case.

  6. Effects of bull elk demographics on age categories of harem bulls

    Science.gov (United States)

    Bender, L.C.

    2002-01-01

    Many management strategies for elk (Cervus elaphus) emphasize increasing numbers of mature bulls in the population. These strategies are usually assumed to enhance productivity via increased breeding by mature bulls. I compared age classes of harem bulls during the peak of the rut under 4 bull harvest strategies that resulted in different bull:cow ratios, mature bull:cow ratios, bull mortality rates, and proportions of mature bulls in the autumn (pre-hunting season) population. Proportions of harems held by differing age classes of bulls [mature (P84% of harems only in populations where mature bull:cow ratios exceeded 21:100 in the autumn population. Interaction of mature bull ratios in the autumn population, harem size, and bull selectivity in the harvest strategy must be considered if increased breeding by mature harem bulls is a management goal.

  7. Estimation of Bull.s Gene Effects for Milk Amount

    Directory of Open Access Journals (Sweden)

    Damir Rimac

    2003-06-01

    Full Text Available In this paper we tried to estimate gene effects of three bulls that are mated with five populations of half-sisters by sire line for milk amount. We wanted to fortify whether the order of bull.s gene effects was unchangeable or it was modified. Totally we analyzed 2824 lactation. Investigation was made on two different generations of Holstein cows (mothers and daughters. Analysis of results for milk production of mothers showed that between different populations of mothers exist significant differences (P<0.05 and P<0.01.It was fortified that order of bulls wasn.t same i.e. that their breeding value (like sum of all present genes in one individual was various on the different populations of cows.

  8. Efficient Enumeration of Chordless Cycles

    OpenAIRE

    Dias, Elisângela Silva; Castonguay, Diane; Longo, Humberto; Jradi, Walid Abdala Rfaei

    2013-01-01

    In a finite undirected simple graph, a {\\it chordless cycle} is an induced subgraph which is a cycle. We propose two algorithms to enumerate all chordless cycles of such a graph. Compared to other similar algorithms, the proposed algorithms have the advantage of finding each chordless cycle only once. To ensure this, we introduced the concepts of vertex labeling and initial valid vertex triplet. To guarantee that the expansion of a given chordless path will always lead to a chordless cycle, w...

  9. Subgraph Enumeration in Massive Graphs

    DEFF Research Database (Denmark)

    Silvestri, Francesco

    bound also applies with high probability. Our algorithm is I/O optimal, in the worst-case, when the sample graph belongs to the Alon class, which includes cliques, cycles and every graph with a perfect matching: indeed, we show that any algorithm enumerating $T$ instances must always use $\\BOM......We consider the problem of enumerating all instances of a given sample graph in a large data graph. Our focus is on determining the input/output (I/O) complexity of this problem. Let $E$ be the number of edges in the data graph, $k=\\BO{1}$ be the number of vertexes in the sample graph, $B$ be the...... block length, and $M$ be the main memory size. The main result of the paper is a randomized algorithm that enumerates all instances of the sample graph in $\\BO{E^{k/2}/\\left(BM^{k/2-1}\\right)}$ expected I/Os if the maximum vertex degree of the data graph is $\\sqrt{EM}$. Under some assumptions, the same...

  10. Breeding soundness evaluation of young beef bulls

    OpenAIRE

    Persson, Ylva

    2007-01-01

    The overall aims were to learn more about factors affecting fertility in Swedish beef sires in general and in yearling beef bulls in particular, focusing mainly on sexual maturity and hind limb health finding useful tools in order to be able to routinely perform a complete bull breeding soundness evaluations in Swedish beef bulls. Semen was collected from yearling beef bulls, postmortem, and the sperm morphology was evaluated. Using a strict definition, based on sperm morphology, we could dem...

  11. An epizootic among rainbow trout

    Science.gov (United States)

    1953-01-01

    An epizootic among rainbow trout (Salmo gairdnerii) in a private trout farm, resulting from a species of Ichthyosporidium that caused very high mortality rates in all ages of trout, reported from the State of Washington.

  12. The 1000 bull genome project

    Science.gov (United States)

    To meet growing global demands for high value protein from milk and meat, rates of genetic gain in domestic cattle must be accelerated. At the same time, animal health and welfare must be considered. The 1000 bull genomes project supports these goals by providing annotated sequence variants and ge...

  13. Neuroretinitis following bull ant sting

    OpenAIRE

    Ullrich, Katja; Saha, Niladri; Lake, Stewart

    2012-01-01

    Cat scratch disease causes the majority of cases of neuroretinitis. Neuroretinitis is characterised by clinical features of papillitis, macular oedema and macular star. We report a case study of infection with Bartonella henselae most likely transmitted by a bull ant sting. The patient presented with blurred vision and reduced visual acuity after being stung by an ant in her garden some 7 days earlier. Further testing revealed positive serology to B henselae and the patient improved with appr...

  14. Enumerations deciding the weak Lefschetz property

    CERN Document Server

    Cook, David

    2011-01-01

    We introduce a natural correspondence between artinian monomial almost complete intersections in three variables and punctured hexagons. We use this correspondence to investigate the algebras for the presence of the weak Lefschetz property. In particular, we relate the field characteristics in which such an algebra fails to have the weak Lefschetz property to the prime divisors of the enumeration of signed lozenge tilings of the associated punctured hexagonal region. On the one side this allows us to establish the weak Lefschetz property in many new cases. On the other side, we can determine some of the prime divisors of the enumerations by means of an algebraic argument. For numerous classes of punctured hexagonal regions we find closed formulae for the enumerations of signed lozenge tilings and, thus, the field characteristics in which the associated algebras fail to the have the weak Lefschetz property. Further, we offer a conjecture for a closed formula for the enumerations of signed lozenge tilings of sy...

  15. Examining indirect effects of lake trout recovery

    Science.gov (United States)

    With the recovery of lake trout populations in Lake Superior, there are indications of decreased forage fish abundance and density-dependence in lake trout. In Lake Superior, lean lake trout historically occupied depths trout occupied depths > 60 m...

  16. Epidermal response of rainbow trout to Ichthyobodo necator

    DEFF Research Database (Denmark)

    Chettri, Jiwan Kumar; Kuhn, Jesper Andreas; Mohammad, Rezkar Jaafar;

    2014-01-01

    Infections with the parasitic flagellate Ichthyobodo necator (Henneguy, 1883) cause severe skin and gill disease in rainbow trout Oncorhynchus mykiss (Walbaum, 1792) juveniles. The epidermal disturbances including hyperplasia and mucous cell exhaustion caused by parasitization are known, but no...... experimental infection of juvenile rainbow trout. The course of infection was followed by sampling for parasite enumeration, immunohistochemistry (IHC) and quantitative PCR (qPCR) on days 0, 5, 9 and 14 post-infection. IHC showed a significant increase in the occurrence of IgM-positive cells in the skin of the...

  17. Factors affecting spermatozoa morphology in beef bulls

    Science.gov (United States)

    The objective of this study was to evaluate factors affecting sperm morphology of bulls (n=908) collected at 320 days of age. Bulls were a composite breed (50% Red Angus, 25% Charolais, and 25% Tarentaise) born from 2002 to 2008 to dams fed levels of feed during mid and late gestation that were expe...

  18. Sperm macromolecules associated with bull fertility.

    Science.gov (United States)

    Kaya, Abdullah; Memili, Erdoğan

    2016-06-01

    Bull fertility, ability of the sperm to fertilize and activate the egg that sustain embryo development, is vitally important for effective and efficient production of cattle. Fertility is a complex trait with low heritability. Despite recent advances in genomic selection and possibility of enormous paternal benefits to profitable cattle production, there exist no reliable tests for evaluating semen quality and predicting bull fertility. This review focuses on sperm macromolecules such as transcripts, proteins and the epigenome, i.e., the functional genome that are associated with bull fertility. Generating new information in these systems is important beyond agriculture because such progress advances the fundamental science of the mammalian male gamete while at the same time introduces biotechnology into livestock production. Sperm macromolecules and epigenome markers associated with bull fertility can be used alone or in combination with the current SNP microarrays to determine sperm quality and to indicate bull fertility. PMID:26925808

  19. Trout Stream Special Regulations

    Data.gov (United States)

    Minnesota Department of Natural Resources — This layer shows Minnesota trout streams that have a special regulation as described in the 2006 Minnesota Fishing Regulations. Road crossings were determined using...

  20. Modulo computably enumerable degrees by cupping partners

    Institute of Scientific and Technical Information of China (English)

    Wei WANG; De-cheng DING

    2007-01-01

    Cupping partners of an element in an upper semilattice with a greatest element 1 are those joining the element to 1. We define a congruence relation on such an upper semilattice by considering the elements having the same cupping partners as equivalent. It is interesting that this congruence relation induces a non-dense quotient structure of computably enumerable Turing degrees. Another main interesting phenomenon in this article is that on the computably enumerable degrees, this relation is different from that modulo the noncuppable ideal, though they define a same equivalent class for the computable Turing degree.

  1. Pedigree Analysis of Holstein Bulls in Slovakia

    Directory of Open Access Journals (Sweden)

    Ivan Pavlík

    2012-05-01

    Full Text Available The aim of the study was to evaluate the genetic diversity in Holstein bulls population in Slovakia by the methods of pedigree analysis. The population was represented by the bulls with reserve of frozen semen doses in AI centers. Whole reference population consisted of 169 bulls born from 1997 to 2009. For calculation of diversity parameters the program Endog v.4.8 (Gutiérrez, Goyache, 2005 was used. An average maximal number of generations traced was 9.35, 3.06 complete generations and equivalent number of generations traced was 5.71. An average coefficient of inbreeding was 2.48%, individual increase in inbreeding was 0.53% and average relatedness was 2.72%. The 167 bulls from 169 were inbred (98.82%. An average number of offsprings per bull was 107.70 with maximal number 1,641 offsprings. The effective population size computed via individual increase in inbreeding was 94.50. The effective number of founders was 88, effective number of ancestors 31 and only 13 ancestors described 50% of diversity. From these results we can conclude that the diversity of Holstein bulls is reduced by more factors (inbreeding, high relatedness, bottlenecks. Obtained results point out the need to use new outbred bull lines for mating cows.

  2. Complete Weight Enumerators of Some Linear Codes

    OpenAIRE

    Yang, Shudi; Yao, Zheng-an

    2015-01-01

    Linear codes have been an interesting topic in both theory and practice for many years. In this paper, for an odd prime $p$, we determine the explicit complete weight enumerators of two classes of linear codes over $\\mathbb{F}_p$ and they may have applications in cryptography and secret sharing schemes. Moreover, some examples are included to illustrate our results.

  3. Components of bull and bear markets: bull corrections and bear rallies

    OpenAIRE

    Maheu, John M; Thomas H. McCurdy; Yong Song

    2010-01-01

    Existing methods of partitioning the market index into bull and bear regimes do not identify market corrections or bear market rallies. In contrast, our probabilistic model of the return distribution allows for rich and heterogeneous intra-regime dynamics. We focus on the characteristics and dynamics of bear market rallies and bull market corrections, including, for example, the probability of transition from a bear market rally into a bull market versus back to the primary bear state. A Baye...

  4. Circulating Tumor Cells, Enumeration and Beyond

    Directory of Open Access Journals (Sweden)

    Jian-Mei Hou

    2010-06-01

    Full Text Available The detection and enumeration of circulating tumor cells (CTCs has shown significant clinical utility with respect to prognosis in breast, colorectal and prostate cancers. Emerging studies show that CTCs can provide pharmacodynamic information to aid therapy decision making. CTCs as a ‘virtual and real-time biopsy’ have clear potential to facilitate exploration of tumor biology, and in particular, the process of metastasis. The challenge of profiling CTC molecular characteristics and generating CTC signatures using current technologies is that they enrich rather than purify CTCs from whole blood; we face the problem of looking for the proverbial ‘needle in the haystack’. This review summarizes the current methods for CTC detection and enumeration, focuses on molecular characterization of CTCs, unveils some aspects of CTC heterogeneity, describes attempts to purify CTCs and scans the horizon for approaches leading to comprehensive dissection of CTC biology.

  5. Circulating Tumor Cells, Enumeration and Beyond

    International Nuclear Information System (INIS)

    The detection and enumeration of circulating tumor cells (CTCs) has shown significant clinical utility with respect to prognosis in breast, colorectal and prostate cancers. Emerging studies show that CTCs can provide pharmacodynamic information to aid therapy decision making. CTCs as a ‘virtual and real-time biopsy’ have clear potential to facilitate exploration of tumor biology, and in particular, the process of metastasis. The challenge of profiling CTC molecular characteristics and generating CTC signatures using current technologies is that they enrich rather than purify CTCs from whole blood; we face the problem of looking for the proverbial ‘needle in the haystack’. This review summarizes the current methods for CTC detection and enumeration, focuses on molecular characterization of CTCs, unveils some aspects of CTC heterogeneity, describes attempts to purify CTCs and scans the horizon for approaches leading to comprehensive dissection of CTC biology

  6. Circulating Tumor Cells, Enumeration and Beyond

    Energy Technology Data Exchange (ETDEWEB)

    Hou, Jian-Mei [Clinical and Experimental Pharmacology Group, Paterson Institute for Cancer Research, Manchester M20 4BX (United Kingdom); Krebs, Matthew [Clinical and Experimental Pharmacology Group, Paterson Institute for Cancer Research, Manchester M20 4BX (United Kingdom); Christie Hospital Foundation NHS Trust, Manchester M20 4BX (United Kingdom); Ward, Tim; Morris, Karen; Sloane, Robert [Clinical and Experimental Pharmacology Group, Paterson Institute for Cancer Research, Manchester M20 4BX (United Kingdom); Blackhall, Fiona [Clinical and Experimental Pharmacology Group, Paterson Institute for Cancer Research, Manchester M20 4BX (United Kingdom); School of Cancer and Enabling Sciences, University of Manchester, Manchester Cancer Research Centre, Manchester Academic Health Sciences Centre, Manchester M20 4BX (United Kingdom); Christie Hospital Foundation NHS Trust, Manchester M20 4BX (United Kingdom); Dive, Caroline, E-mail: cdive@picr.man.ac.uk [Clinical and Experimental Pharmacology Group, Paterson Institute for Cancer Research, Manchester M20 4BX (United Kingdom); School of Cancer and Enabling Sciences, University of Manchester, Manchester Cancer Research Centre, Manchester Academic Health Sciences Centre, Manchester M20 4BX (United Kingdom)

    2010-06-09

    The detection and enumeration of circulating tumor cells (CTCs) has shown significant clinical utility with respect to prognosis in breast, colorectal and prostate cancers. Emerging studies show that CTCs can provide pharmacodynamic information to aid therapy decision making. CTCs as a ‘virtual and real-time biopsy’ have clear potential to facilitate exploration of tumor biology, and in particular, the process of metastasis. The challenge of profiling CTC molecular characteristics and generating CTC signatures using current technologies is that they enrich rather than purify CTCs from whole blood; we face the problem of looking for the proverbial ‘needle in the haystack’. This review summarizes the current methods for CTC detection and enumeration, focuses on molecular characterization of CTCs, unveils some aspects of CTC heterogeneity, describes attempts to purify CTCs and scans the horizon for approaches leading to comprehensive dissection of CTC biology.

  7. Enumeration of States in a Periodic Glass

    OpenAIRE

    Chandra, P.; Ioffe, L. B.; Sherrington, D.

    1998-01-01

    We present an analytic enumeration of the metastable states, $N_s$, in a periodic long-range Josephson array frustrated by a transverse field. We find that the configurational entropy, $S_{conf} \\equiv \\ln N_s$, is extensive and scales with frustration, confirming that the non-random system is glassy. We also find that $S_{conf}$ is different from that of its disordered analogue, despite that fact that the two models share the same dynamical equations.

  8. Construction and Enumerating of Resilient—Functions

    Institute of Scientific and Technical Information of China (English)

    WENQiaoyan; YANGYixian

    2003-01-01

    This paper discussed construction and enumeration of resilient functions,which have widely applications in the fault-tolerant distributed computing,quantum-cryptographic key distribution,and random sequence generation for stream ciphers.It turned out that resilient functions are special case of unbiased multi-value correlation-immune functions.Resilient functions are constructed by recursive construction of orthogonal matrices and the exact number of them is found for some special cases.

  9. On SAT Models Enumeration in Itemset Mining

    OpenAIRE

    Jabbour, Said; Sais, Lakhdar; Salhi, Yakoub

    2015-01-01

    Frequent itemset mining is an essential part of data analysis and data mining. Recent works propose interesting SAT-based encodings for the problem of discovering frequent itemsets. Our aim in this work is to define strategies for adapting SAT solvers to such encodings in order to improve models enumeration. In this context, we deeply study the effects of restart, branching heuristics and clauses learning. We then conduct an experimental evaluation on SAT-Based itemset mining instances to sho...

  10. Enumerations of lattice animals and trees

    OpenAIRE

    Jensen, Iwan

    2000-01-01

    We have developed an improved algorithm that allows us to enumerate the number of site animals on the square lattice up to size 46. We also calculate the number of lattice trees up to size 44 and the radius of gyration of both lattice animals and trees up to size 42. Analysis of the resulting series yields an improved estimate, $\\lambda = 4.062570(8)$, for the growth constant of lattice animals, and, $\\lambda_0 = 3.795254(8)$, for the growth constant of trees, and confirms to a very high degr...

  11. Dense module enumeration in biological networks

    International Nuclear Information System (INIS)

    Analysis of large networks is a central topic in various research fields including biology, sociology, and web mining. Detection of dense modules (a.k.a. clusters) is an important step to analyze the networks. Though numerous methods have been proposed to this aim, they often lack mathematical rigorousness. Namely, there is no guarantee that all dense modules are detected. Here, we present a novel reverse-search-based method for enumerating all dense modules. Furthermore, constraints from additional data sources such as gene expression profiles or customer profiles can be integrated, so that we can systematically detect dense modules with interesting profiles. We report successful applications in human protein interaction network analyses.

  12. Enumeration of Cylindric Plane Partitions - part I

    CERN Document Server

    Langer, Robin

    2012-01-01

    Cylindric plane partitions may be thought of as a natural generalization of reverse plane partitions. A generating series for the enumeration of cylindric plane partitions was recently given by Borodin. The first result of this paper is a $(q,t)$-analog of Borodin's identity which extends previous work by Okada in the reverse plane partition case. Our proof uses commutation relations for $(q,t)$-vertex operators acting on Macdonald polynomials as given by Garsia, Haiman and Tesla. The second result of this paper is an explicit combinatorial interpreation of the $(q,t)$-Macdonald weight in terms of a non-intersecting lattice path model on the cylinder.

  13. Brand image and identity of Red Bull

    OpenAIRE

    Kubátová, Karolína

    2009-01-01

    The thesis is focused on a comparison of the image perception and brand identity of Red Bull. The theoretical part explains the difference between the concepts of identity and brand image, how the brand sees itself and how it is perceived from the perspective of consumers. Further information is also given in the context of the topic. This analysis yields a comparison between the brand's identity and the inaccuracies in the perceptions of the brand image, and reveals the real image of Red Bull.

  14. Evaluating pathway enumeration algorithms in metabolic engineering case studies

    OpenAIRE

    Liu, Filipe; Vilaça, Paulo; Rocha, I; Rocha, Miguel

    2014-01-01

    The design of cell factories for the production of compounds involves the search for suitable heterologous pathways. Different strategies have been proposed to infer such pathways, but most are optimization approaches with specific objective functions, not suited to enumerate multiple pathways. In this work, we analyze two pathway enumeration algorithms based on graph representations: the Solution Structure Generation and the Find Path algorithms. Both are capable of enumerating exhaustively ...

  15. Preparing Bulls for the Breeding Season

    OpenAIRE

    Bagley, Clell V., DVM

    1997-01-01

    With proper care prior to and during the breeding season, cattlemen can increase the breeding capacity of bulls. Breeding soundness evaluations and trichomoniasis testing are tools which can aid a herd manager as he makes critical decisions for next year’s calf crop.

  16. Bull Riding Injuries In Central Queensland

    Directory of Open Access Journals (Sweden)

    Ryan James Livingston

    2012-07-01

    Full Text Available Background Bull riding is an increasingly popular and growing professional sport in Australia. This is the first national study that investigates bull riding-related injuries. Method A six-year retrospective study of patients admitted to Rockhampton Base Hospital with acute injuries sustained whilst bull riding. Patients were identified from the Rockhampton Hospital international coding system and surgical audit excel databases. Supporting information was found from patient chart review. Results Thirty-eight patients were admitted during the study. Injuries increased from 2008. The most common injuries were to limbs (52%, chest (15% and brain (10%. Life-threatening injuries were all caused by a direct kick or trampling by the bull; 5% of patients needed air transfer to Brisbane, and 10% to Rockhampton for their acute care. The only complication was infection of open wounds. The average hospital stay was 2.2 (range= 1-5, SD= 1.1 days and 64% of patients required operative intervention. Conclusion Patients that had been kicked or trampled should be identified as having potentially life-threatening injuries, and transferred for review at an appropriate facility. Due to the high risk of infection all contaminated wounds should be washed out formally and receive antibiotics. Protective equipment should be encouraged among riders.

  17. The Sea Trout Year 1985

    OpenAIRE

    Fahy, E

    1986-01-01

    The wet year of 1985 yielded good catches to the rod and to commercial engines. Salmon were taken in reasonable numbers in the drift nets although only small numbers of sea trout were captured by this method. The wet angling season is thought to have provided productive fishing conditions contributing largely to a 22% increase over the previous year's landings of sea trout.

  18. Trout in the Classroom

    Science.gov (United States)

    Heath, Thomas

    2014-05-01

    Trout in the Classroom (TIC) is a conservation-oriented environmental education program for elementary, middle, and high school students. During the year each teacher tailors the program to fit his or her curricular needs. Therefore, each TIC program is unique. TIC has interdisciplinary applications in science, social studies, mathematics, language arts, fine arts, and physical education. In the program, students and teachers raise trout from fertilized eggs supplied by Virginia Department of Game and Inland Fisheries (VGIF) hatcheries, in aquariums equipped with special chillers designed to keep the water near 50 degrees F. The students make daily temperature measurements, and monitor pH, dissolved oxygen, conductivity, and ammonia levels. They record their data, plot trends, and make sure that the water quality is sufficient to support trout development. The fingerlings, which hatch in late October, are almost an inch and a half long by mid-January. And towards the end of the school year, students will release the fry into VGIF approved watersheds. TIC programs have been in place all across the country for more than 20 years, and are the result of numerous collaborations between teachers, volunteers, government agencies, and local organizations like Trout Unlimited. The programs were designed specifically for teachers who wanted to incorporate more environmental education into their curriculum. While the immediate goal of Trout in the Classroom is to increase student knowledge of water quality and cold water conservation, its long-term goal is to reconnect an increasingly urbanized population of youth to the system of streams, rivers, and watersheds that sustain them. Successful programs have helped: connect students to their local environments and their local watersheds; teach about watershed health and water quality, and; get students to care about fish and the environment. In Virginia, the TIC program is now in its 8th year. Over the past year, the program

  19. Embryotoxicity of an extract from Great Lakes lake trout to rainbow trout and lake trout

    Energy Technology Data Exchange (ETDEWEB)

    Wright, P.J.; Tillitt, D.E. [National Biological Service, Columbia, MO (United States). Midwest Science Center

    1995-12-31

    Aquatic ecosystems such as the Great Lakes are known to be contaminated with chemicals that are toxic to fish. However, the role of these contaminants in reproductive failures of fishes, such as lake trout recruitment, has remained controvertible. It was the objective to evaluate dioxin-like embryotoxicity of a complex mixture of chemicals and predict their potential to cause the lack of recruitment in Great Lakes lake trout. Graded doses of a complex environmental extract were injected into eggs of both rainbow trout and lake trout. The extract was obtained from whole adult lake trout collected from Lake Michigan in 1988. The extract was embryotoxic in rainbow trout, with LD50 values for Arlee strain and Erwin strain of 33 eggEQ and 14 eggEQ respectively. The LOAEL for hemorrhaging, yolk-sac edema, and craniofacial deformities in rainbow trout were 2, 2, and 4 eggEQ, respectively. Subsequent injections of the extract into lake trout eggs were likewise embryotoxic, with an LD50 value of 7 eggEQ. The LOAEL values for the extract in lake trout for hemorrhaging, yolk-sac edema, and craniofacial deformities were 0.1, 1, and 2 eggEQ, respectively. The current levels of contaminants in lake trout eggs are above the threshold for hemorrhaging and yolk-sac edema. The results also support the use of an additive model of toxicity to quantify PCDDs, PCDFs, Non-o-PCBs, and Mono-o-PCBs in relation to early life stage mortality in Lake Michigan lake trout.

  20. On the effective and automatic enumeration of polynomial permutation classes

    OpenAIRE

    Homberger, Cheyne; Vatter, Vince

    2013-01-01

    We describe an algorithm, implemented in Python, which can enumerate any permutation class with polynomial enumeration from a structural description of the class. In particular, this allows us to find formulas for the number of permutations of length n which can be obtained by a finite number of block sorting operations (e.g., reversals, block transpositions, cut-and-paste moves).

  1. Enumeration of petroleum hydrocarbon utilizing bacteria

    International Nuclear Information System (INIS)

    In-situ biological treatment is one among a number of emerging technologies that may be applied to the remediation of contaminated soils and groundwater. In 1985, a surface spill of 1,500 gallons of dielectric transformer oil at the Sandia National Laboratories (HERMES II facility) resulted in contamination of soil up to depths of 160 feet. The extent of contamination and site characteristics favored the application of in-situ bioremediation as a potential remedial technology. The purpose of this research was to enumerate indigenous microbial populations capable of degrading petroleum hydrocarbons. Microbial enumeration and characterization methods suitably adapted for hydrocarbon utilizing bacteria were used as an indicator of the presence of viable microbial consortia in excavated oil samples with hydrocarbon (TPH) concentrations ranging from 300 to 26,850 ppm. Microbial activity was quantified by direct and streak plating soil samples on silica gel media. Effects of toxicity and temperature were studied using batch cultures of hydrocarbon utilizing bacteria (selectively isolated in an enrichment medium), at temperatures of 20 and 35 C. It was concluded from this study that it is possible to isolate native microorganisms from contaminated soils from depths of 60 to 160 feet, and with oil concentration ranging from 300 to 26,850 ppm. About 62% of the microorganisms isolated form the contaminated soil were capable of using contaminant oil as a substrate for growth and metabolism under aerobic conditions. Growth rates were observed to be 50% higher for the highest contaminant concentration at 20 C. Resistance to toxicity to contaminant oil was also observed to be greater at 20 C than at 35 C

  2. Plump Cutthroat Trout and Thin Rainbow Trout in a Lentic Ecosystem

    OpenAIRE

    Courtney, Joshua; Abbott, Jessica; Schmidt, Kerri; Courtney, Michael

    2012-01-01

    Background: Much has been written about introduced rainbow trout (Oncorhynchus mykiss) interbreeding and outcompeting cutthroat trout (Oncorhynchus clarkii). However, the specific mechanisms by which rainbow trout and their hybrids outcompete cutthroat trout have not been thoroughly explored, and the published data is limited to lotic ecosystems. Materials and Methods: Samples of rainbow trout and cutthroat trout were obtained from a lentic ecosystem by angling. The total length and weight of...

  3. Broad-scale patterns of Brook Trout responses to introduced Brown Trout in New York

    Science.gov (United States)

    McKenna Jr, James E.; Slattery, Michael T.; Kean M. Clifford

    2013-01-01

    Brook Trout Salvelinus fontinalis and Brown Trout Salmo trutta are valuable sport fish that coexist in many parts of the world due to stocking introductions. Causes for the decline of Brook Trout within their native range are not clear but include competition with Brown Trout, habitat alteration, and repetitive stocking practices. New York State contains a large portion of the Brook Trout's native range, where both species are maintained by stocking and other management actions. We used artificial neural network models, regression, principal components analysis, and simulation to evaluate the effects of Brown Trout, environmental conditions, and stocking on the distribution of Brook Trout in the center of their native range. We found evidence for the decline of Brook Trout in the presence of Brown Trout across many watersheds; 22% of sampled reaches where both species were expected to occur contained only Brown Trout. However, a model of the direct relationship between Brook Trout and Brown Trout abundance explained less than 1% of data variation. Ordination showed extensive overlap of Brook Trout and Brown Trout habitat conditions, with only small components of the hypervolume (multidimensional space) being distinctive. Subsequent analysis indicated higher abundances of Brook Trout in highly forested areas, while Brown Trout were more abundant in areas with relatively high proportions of agriculture. Simulation results indicated that direct interactions and habitat conditions were relatively minor factors compared with the effects of repeated stocking of Brown Trout into Brook Trout habitat. Intensive annual stocking of Brown Trout could eliminate resident Brook Trout in less than a decade. Ecological differences, harvest behavior, and other habitat changes can exacerbate Brook Trout losses. Custom stocking scenarios with Brown Trout introductions at relatively low proportions of resident Brook Trout populations may be able to sustain healthy populations of both

  4. ECONOMICS OF PURCHASING GENETICALLY SUPERIOR BEEF BULLS

    OpenAIRE

    Clary, Gregory M.; Jordan, Johnny W.; Thompson, Carl Eugene

    1984-01-01

    Net present value analysis is used to derive the marginal bid price for a beef herd sire from after-tax net revenues and cash flow influenced by genetic improvements. Marginal bid price represents the additional amount a producer could pay, above the present value of the current beef herd sire, for a sire expected to exhibit superior performance as reflected by increased average weaning weights of offspring. An analysis of the profitability of purchasing a breeding bull for a commercial beef ...

  5. On the Stabilizer of Weight Enumerators of Linear Codes

    OpenAIRE

    Borello, Martino; Mila, Olivier

    2015-01-01

    This paper investigates the relation between linear codes and the stabilizer in ${\\rm GL}_2(\\mathbb{C})$ of their weight enumerators. We prove a result on the finiteness of stabilizers and give a complete classification of linear codes with infinite stabilizer in the non-binary case. We present an efficient algorithm to compute explicitly the stabilizer of weight enumerators and we apply it to the family of Reed-Muller codes to show that some of their weight enumerators have trivial stabilizer.

  6. Infertility of the breeding bull in insemination technology

    Directory of Open Access Journals (Sweden)

    Predojević Mirko R.

    2004-01-01

    Full Text Available In spite of very strict breeding bull selection, especialy for A.I programes their infertility is a very serius problem in everyday practice. Especially bull semen has been marked as the main factor for unsatisfied cow fertility in the A.I.programme. The reason could be the bull semen which really may play as the spreading factor of the specific or non-specific reproductive infective disoders – IBR, IPV, BVD, Campylobacter-Vibrio fetus, brucellosis leptospirosis, tuberculosis and other reproductive diseases. Secondarily, the percentage of vitality, motility, penetration abilities, and immonological properties of bull spermatozoa also have an important role in unsuccessful bovine fecundation. That is, why it is necessary to secure professional health care for breedig bull in AI centres, becase only healthy bulls can ensure good bovine genetic transmission and progress in cattle production for today's growing population.

  7. Viral quasispecies assembly via maximal clique enumeration.

    Directory of Open Access Journals (Sweden)

    Armin Töpfer

    2014-03-01

    Full Text Available Virus populations can display high genetic diversity within individual hosts. The intra-host collection of viral haplotypes, called viral quasispecies, is an important determinant of virulence, pathogenesis, and treatment outcome. We present HaploClique, a computational approach to reconstruct the structure of a viral quasispecies from next-generation sequencing data as obtained from bulk sequencing of mixed virus samples. We develop a statistical model for paired-end reads accounting for mutations, insertions, and deletions. Using an iterative maximal clique enumeration approach, read pairs are assembled into haplotypes of increasing length, eventually enabling global haplotype assembly. The performance of our quasispecies assembly method is assessed on simulated data for varying population characteristics and sequencing technology parameters. Owing to its paired-end handling, HaploClique compares favorably to state-of-the-art haplotype inference methods. It can reconstruct error-free full-length haplotypes from low coverage samples and detect large insertions and deletions at low frequencies. We applied HaploClique to sequencing data derived from a clinical hepatitis C virus population of an infected patient and discovered a novel deletion of length 357±167 bp that was validated by two independent long-read sequencing experiments. HaploClique is available at https://github.com/armintoepfer/haploclique. A summary of this paper appears in the proceedings of the RECOMB 2014 conference, April 2-5.

  8. Asymptotic Enumeration of RNA Structures with Pseudoknots

    CERN Document Server

    Jin, Emma Y

    2007-01-01

    In this paper we present the asymptotic enumeration of RNA structures with pseudoknots. We develop a general framework for the computation of exponential growth rate and the sub exponential factors for $k$-noncrossing RNA structures. Our results are based on the generating function for the number of $k$-noncrossing RNA pseudoknot structures, ${\\sf S}_k(n)$, derived in \\cite{Reidys:07pseu}, where $k-1$ denotes the maximal size of sets of mutually intersecting bonds. We prove a functional equation for the generating function $\\sum_{n\\ge 0}{\\sf S}_k(n)z^n$ and obtain for $k=2$ and $k=3$ the analytic continuation and singular expansions, respectively. It is implicit in our results that for arbitrary $k$ singular expansions exist and via transfer theorems of analytic combinatorics we obtain asymptotic expression for the coefficients. We explicitly derive the asymptotic expressions for 2- and 3-noncrossing RNA structures. Our main result is the derivation of the formula ${\\sf S}_3(n) \\sim \\frac{10.4724\\cdot 4!}{n(n...

  9. Infertility of the breeding bull in insemination technology

    OpenAIRE

    Predojević Mirko R.; Marinković Miroslav; Jovičin Milovan; Prka Igor

    2004-01-01

    In spite of very strict breeding bull selection, especialy for A.I programes their infertility is a very serius problem in everyday practice. Especially bull semen has been marked as the main factor for unsatisfied cow fertility in the A.I.programme. The reason could be the bull semen which really may play as the spreading factor of the specific or non-specific reproductive infective disoders – IBR, IPV, BVD, Campylobacter-Vibrio fetus, brucellosis leptospirosis, tuberculosis and other reprod...

  10. Debunking the Effects of Taurine in Red Bull Energy Drink

    OpenAIRE

    Kim, Woojae

    2003-01-01

    Red Bull is a carbonated beverage that initially gained wide popularity in the U.S. during the late nineties. Taking root amongst college campuses, it appeared throughout underground clubs and eventually entered mainstream pop-culture. The manufactures claim that drinking Red Bull enhances physical endurance, concentration and reaction speed (1,6). The main ingredients of Red Bull include sugar, taurine, glucuronolactone and caffeine. It is hypothesized that the combinatorial influences o...

  11. Spawning Trout in Eastern Connemara

    OpenAIRE

    Fahy, E.; Nixon, J. J.

    1982-01-01

    Concentrations totalling 299 trout from nine spawning sites in eastern Connemara in 1981 were examined to elucidate the spawning biology of these stocks. Sea trout made up the majority. Brown liveried fish predominated among migratory males (75%) but were few among females (2.5%). Males were of younger sea and river age than females and the ratio of females to males was lowest among the younger age categories. Scars and marks were evenly distributed between the sexes and 51% of females showed...

  12. Effect of zeranol on sexual development of crossbred bulls.

    Science.gov (United States)

    Godfrey, R W; Randel, R D; Rouquette, F M

    1989-07-01

    Three groups of 1/2 Simmental X 1/4 Brahman X 1/4 Hereford bull calves were used during two different years to study effects of zeranol on sexual development. At 154 d of age, half the calves were implanted with 36 mg zeranol and half, not implanted, served as controls. Implanted calves were reimplanted at 90-d intervals throughout the trial (9 mo) each year. Trial 1 was conducted with 24 calves and Trial 2 was conducted the following year with 10 bulls. Twenty-four days after weaning (200 d of age) and at 28-d intervals thereafter, bulls in drylot in Trial 1 were weighted, scrotal circumference (SC) was measured and an ejaculate of semen was collected by electroejaculation to determine puberty. At these times, bulls were given 200 micrograms of GnRH i.m. and blood was collected at 0, 1, 2, 3, 4 and 5 h after GnRH. Serum concentrations of LH and testosterone (TEST) were determined. At slaughter, testis weight, length and circumference and pubertal status were recorded. Bulls implanted with zeranol had smaller SC than control bulls during the entire 9-mo period (P less than .0001). More control bulls reached puberty than did implanted bulls (82.4 vs 23.5%, respectively; P less than .001). Control bulls had larger testis measurements at slaughter (P less than .0001). Implants did not alter total weight gain or ADG (P greater than .10).(ABSTRACT TRUNCATED AT 250 WORDS) PMID:2768123

  13. Bull- og Bearfond under lupen : volum og avkastningssammenhenger

    OpenAIRE

    Eidsaa, Andreas; Bergan, Carl-Fredrik Iuell

    2010-01-01

    Bull- og Bearfondene har etter hvert blitt meget populære som spekulasjonsprodukter. Denne oppgaven har som mål å avdekke sammenhenger mellom avkastning og volum for OBX Total Return Index og Bull- og Bearfond på Oslo Børs. Det kan ikke konkluderes med at det finnes en klar signifikant direkte sammenheng mellom avkastning i OBX og volum i Bull- og Bearfondene, bortsett fra for DnB Nor Bull. Det finnes en signifikant Granger-kausal sammenheng fra avkastningen i OBX indeksen til ...

  14. National Plan and Provider Enumeration System (NPPES) Downloadable File

    Data.gov (United States)

    U.S. Department of Health & Human Services — The National Plan and Provider Enumeration System (NPPES) downloadable file (also referred to as the NPI Downloadable File) contains FOIA-disclosable NPPES health...

  15. CT Burst Error Weight Enumerator of Array Codes

    OpenAIRE

    Irfan Siap

    2008-01-01

    Recently, CT burst errors originally dened for block codes havebeen generalized to CT burst errors for array codes [6]. In order to establish aRieger's type bound for array codes with respect to CT burst errors. Here, weintroduce a CT burst error weight enumerator whose coecients represent thenumber of CT burst errors of a particular weight. The method of obtainingthe CT burst error weight enumerator is obtained by generating function likeapproach and it does not involve solving equations as ...

  16. Selective enumeration of bifidobacterial species in food and food supplements

    OpenAIRE

    Jehličková, Tereza

    2013-01-01

    This work "Selective enumeration of bifidobacterial species in food and food supplements" in the first part deals with the general characteristics of functional foods and food supplements, subsequently food supplements containing bacteria of the genus Bifidobacterium and their enumeration. Nowadays, the functional food is very popular, as well as food supplements, with which they are often mixed up. Probiotics, which is usually used in the form of capsules or bulk powder, in the form of o...

  17. The maximum clique enumeration problem: algorithms, applications, and implementations

    OpenAIRE

    Eblen John D; Phillips Charles A; Rogers Gary L; Langston Michael A

    2012-01-01

    Abstract Background The maximum clique enumeration (MCE) problem asks that we identify all maximum cliques in a finite, simple graph. MCE is closely related to two other well-known and widely-studied problems: the maximum clique optimization problem, which asks us to determine the size of a largest clique, and the maximal clique enumeration problem, which asks that we compile a listing of all maximal cliques. Naturally, these three problems are NP-hard, given that they subsume the classic ver...

  18. Effects of arsenic on bull trout: An investigation of mine cleanup practices in the Pacific Northwest

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This study evaluated the effects of arsenic and heavy metals on individual salmonids and the aquatic community within Gold Creek, Idaho. Gold Creek is a tributary...

  19. Do Rainbow Trout and Their Hybrids Outcompete Cutthroat Trout in a Lentic Ecosystem?

    OpenAIRE

    Courtney, Joshua M.; Courtney, Amy C.; Courtney, Michael W.

    2013-01-01

    Much has been written about introduced rainbow trout interbreeding and outcompeting native cutthroat trout. However, specific mechanisms have not been thoroughly explored, and most data is limited to lotic ecosystems. Samples of Snake River cutthroat trout (Oncorhynchus clarkii bouvieri), the rainbow-cutthroat hybrid, the cutbow trout (Onchorhynchus mykiss x clarkii), and rainbow trout (Oncorhynchus mykiss), were obtained from a lentic ecosystem (Eleven Mile Reservoir, Colorado) by creel surv...

  20. 33 CFR 117.337 - Trout River.

    Science.gov (United States)

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Trout River. 117.337 Section 117... OPERATION REGULATIONS Specific Requirements Florida § 117.337 Trout River. The draw of the CSX Railroad Bridge across the Trout River, mile 0.9 at Jacksonville, operates as follows: (a) The bridge is...

  1. Factors affecting daughters distribution among progeny testing Holstein bulls

    Directory of Open Access Journals (Sweden)

    Martino Cassandro

    2012-01-01

    Full Text Available The aim of this study was to investigate factors influencing the number of daughters of Holstein bulls during the progeny testing using data provided by the Italian Holstein Friesian Cattle Breeders Association. The hypothesis is that there are no differences among artificial insemination studs (AIS on the daughters distribution among progeny testing bulls. For each bull and beginning from 21 months of age, the distribution of daughters over the progeny testing period was calculated. Data were available on 1973 bulls born between 1986 and 2004, progeny tested in Italy and with at least 4 paternal half-sibs. On average, bulls exited the genetic centre at 11.3±1.1 months and reached their first official genetic proof at 58.0±3.1 months of age. An analysis of variance was performed on the cumulative frequency of daughters at 24, 36, 48, and 60 months. The generalized linear model included the fixed effects of year of birth of the bull (18 levels, artificial insemination stud (4 levels and sire of bull (137 levels. All effects significantly affected the variability of studied traits. Artificial insemination stud was the most important source of variation, followed by year of birth and sire of bull. Significant differences among AI studs exist, probably reflecting different strategies adopted during progeny testing.

  2. SEMEN COLLECTION AND CONSERVATION OF BULLS SEMEN PODOL TYPE CATTLE

    OpenAIRE

    Premzl, B.; Božić, P.; Viduč, D.; Dejanović, Dubravka; Geceg, I.

    1994-01-01

    Semen collection, artificial vagina, electro-ejaculation, freeze semen We tray to collection ejaculates from bulls Podol Type Cattle with artificial vagina. Fantoms for collecting were cows in heat from the same herd or from another herd. We were not successafuly. With electro-ejaculation we collected ejaculates from bulls Podol Type Cattle and freeze semen in our Institute or in field.

  3. Cellulitis in a Red Kandhari Bull : A Case Report

    Directory of Open Access Journals (Sweden)

    M M Pathan

    2012-06-01

    Full Text Available A case of cellulitis caused by mixed infection of Staphylococcus spp. and Corynebacterium spp in a Red Kandhari bull leading to death of animal was autopsied at the department. It is being a case of cellulitis in a Red Kandhari bull and placed on record. [Vet. World 2012; 5(3.000: 183-184

  4. Short communication: Use of young bulls in the United States

    Science.gov (United States)

    The availability of genomic evaluations since 2008 has resulted in many changes to dairy cattle breeding programs. One such change has been the increased contribution of young bulls (0.8 to 3.9 yr old) to those programs. The increased use of young bulls was investigated using pedigree data and b...

  5. Reduction of the bull: cow ratio in the Brazilian Pantanal

    Directory of Open Access Journals (Sweden)

    Sereno José Robson Bezerra

    2002-01-01

    Full Text Available This work was conducted to study alternatives for reduction of the bull:cow ratio in the Brazilian lowland and, therefore, lower the production costs for the local beef cattle industry. The ratios 1:10, 1:25, and 1:40 were used in native pastures with a mean stocking rate of 0.27 mature animal unit per hectare over two consecutive breeding seasons. Statistical analysis did not show any effect (P>0.05 of year (P = 0.2097, animal category (P = 0.0773, bull:cow ratio (0.8134 on reproductive performance. However, the pregnancy rate in a multiple bull system was higher (P = 0.0228 than in the individual bull system. An evaluation of the economic impact of this management system in the extensive Lowland herds showed that at the ratio of 1:10 the bulls were sub utilized.

  6. Homeopathic treatment for infertility in a prize Nelore bull.

    Science.gov (United States)

    Lobreiro, J

    2007-01-01

    Treatments for infertility in bulls are not described in homeopathic literature. A few treatments, such as changing the protein content of the diet, giving extra minerals, etc have been proposed. This case report describes homeopathic treatment for infertility in a prize bull. A Nelore bull, considered infertile for 3 years, was treated with homeopathic Pulsatilla nigricans 200 CH. Decreased total sperm defects, increased sperm motility and a very impressive increased number of doses of semen produced were observed. The bull relapsed after treatment was withdrawn, but again responded when it was resumed. Since only one animal was observed one cannot assume that the observed changes were due only to this treatment. Further studies may establish the real benefits of a homeopathic medicine in bull infertility. PMID:17227749

  7. Testicular Histomorphometric Evaluation of Zebu Bull Breeds

    Directory of Open Access Journals (Sweden)

    Paulo Antônio Terrabuio Andreussi

    2014-12-01

    Full Text Available The objective of this study was to evaluate the quantitative histology and testicular biometrics in zebu bulls of different breeds. Testicular fragments of Nelore (n=10, Polled Nelore (n=6, Gir (n=5, Guzerat (n=5 and Tabapuã bulls (n=5 were used. The fragments were perfusion-fixed in Karnovsky solution, embedded in glycol methacrylate and stained with toluidine blue-1% sodium borate. The Nelore animals had a higher tubular volumetric proportion (85.2% and greater height of the seminiferous epithelium (73.2 µm than the Gir, Guzerat and Tabapuã breeds. The Nelore animals also had a higher volumetric proportion of Leydig cells (5.2% than the Guzerat and Tabapuã breeds. There was no significant difference for any of these parameters between the Nelore and Polled Nelore breeds. The gonadosomatic index, seminiferous tubule diameter, cross-sectional area of the seminiferous tubule and tubule length (total length and length per gram of testicular parenchyma did not vary among the breeds studied. The morphometric parameters evaluated suggested that the genetic selection applied to the Nelore and Polled Nelore breeds improved the efficiency of spermatogenesis in these breeders.

  8. A STUDY ON TROUT BREEDING IN DUZCE PROVINCE

    OpenAIRE

    Akbulut, Süleyman; KETEN, Akif

    2009-01-01

    In this study, trout breeding facilities of Duzce Province, a suitable place for trout breeding, were evaluated. As a result of this evaluation, current status, capacities, and problems of trout breeding facilities were determined. Some suggestions were provided to solve these problems and increase the capacity of trout breeding facilities. Keywords: Duzce, Trout Breeding.

  9. Self-avoiding walk enumeration via the lace expansion

    International Nuclear Information System (INIS)

    We introduce a new method for the enumeration of self-avoiding walks based on the lace expansion. We also introduce an algorithmic improvement, called the two-step method, for self-avoiding walk enumeration problems. We obtain significant extensions of existing series on the cubic and hypercubic lattices in all dimensions d ≥ 3: we enumerate 32-step self-avoiding polygons in d = 3, 26-step self-avoiding polygons in d = 4, 30-step self-avoiding walks in d = 3, and 24-step self-avoiding walks and polygons in all dimensions d ≥ 4. We analyze these series to obtain estimates for the connective constant and various critical exponents and amplitudes in dimensions 3 ≤ d ≤ 8. We also provide major extensions of 1/d expansions for the connective constant and for two critical amplitudes

  10. Fertility management of bulls to improve beef cattle productivity.

    Science.gov (United States)

    Thundathil, Jacob C; Dance, Alysha L; Kastelic, John P

    2016-07-01

    Global demand for animal proteins is increasing, necessitating increased efficiency of global food production. Improving reproductive efficiency of beef cattle, especially bull fertility, is particularly critical, as one bull can breed thousands of females (by artificial insemination). Identifying the genetic basis of male reproductive traits that influence male and female fertility, and using this information for selection, would improve herd fertility. Early-life selection of elite bulls by genomic approaches and feeding them to optimize postpubertal reproductive potential are essential for maximizing profitability. Traditional bull breeding soundness evaluation, or systematic analysis of frozen semen, eliminates bulls or semen samples that are grossly abnormal. However, semen samples classified as satisfactory on the basis of traditional approaches differ in fertility. Advanced sperm function assays developed for assessing compensatory and noncompensatory (submicroscopic) sperm traits can predict such variations in bull fertility. New knowledge on epigenetic modulations of sperm DNA, messenger RNA, and proteins is fundamental to refine and expand sperm function assays. Sexed semen, plus advanced reproductive technologies (e.g., ovum pickup and in vitro production of embryos) can maximize the efficiency of beef cattle production. This review is focused on genetic considerations for bull selection, physiology of reproductive development, breeding soundness evaluation, recent advances in assessing frozen semen, and existing and emerging uses of sexed semen in beef cattle production. PMID:27173954

  11. Enumeration of self-avoiding walks on the square lattice

    OpenAIRE

    Jensen, Iwan

    2004-01-01

    We describe a new algorithm for the enumeration of self-avoiding walks on the square lattice. Using up to 128 processors on a HP Alpha server cluster we have enumerated the number of self-avoiding walks on the square lattice to length 71. Series for the metric properties of mean-square end-to-end distance, mean-square radius of gyration and mean-square distance of monomers from the end points have been derived to length 59. Analysis of the resulting series yields accurate estimates of the cri...

  12. Testicle size as indicator of fertility in bulls

    Directory of Open Access Journals (Sweden)

    Prka Igor

    2014-01-01

    Full Text Available Male calves from the high value parents, bull fathers and bull dams, enter the selection for artificial insemination. After laboratory tests, the calves are taken to the center for artificial insemination, and after a stay in quarantine the are moved to a test station. At the age of twelve months they are measured for assessing the value of each calf exterior. One of the measures recorded was the testicle scope. On the basis of testicle size, it is possible to predict sperm production potential. For the determination of testicle size (testicular biometry, tapes or rulers were used. The aim of this work was to investigate the possible effect of testicle size on sperm production in young bulls used for artificial insemination. For that purpose there were used the data on circumference of testicles of one year old bulls just starting production of sperm, and then compared with certain semen quality parameters such as: volume of ejaculate and concentration and percentage of alive and progressively mobile spermatozoa. The investigation included all young bulls that started production in the period from 2010. to 2012., that is 36 bulls of various breeds (Simmental, Holstein Friesian, Montafon. After the testicle scope measuring in these bulls, there were observed the parameters of the sperm quality during the following one year period. The obtained results showed that the increased testicle size was followed by the increased average ejaculate quantity, in other words: 3.7 ml in group of bulls with testicle circumference below 30 cm, to 6.7 ml in bulls whose testicle circumference was over 40 cm. Also, the results showed that there was a correlation between the increased testicle size and the increased spermatozoa concentration. The values grow to testicle scope of 36 cm, and above that they were still high but with some oscillations. When it came to relation between testicle scope and the percentage of alive and progressively mobile spermatozoa, the

  13. Bull Bear fond : effekten av volatilitet, tid og vekting

    OpenAIRE

    Myre, Roy Egil

    2010-01-01

    Det grunnleggende formålet med denne oppgaven er å analysere effekten volatilitet, tid og vekting har på bull bear fondene. Flere tidligere studier har vist at store svingninger i markedet kan føre til tap for investorer som holder bull bear fondene, og at den effektive avkastningen til bull bear fondene dermed er sti-avhengig. Ved bruk av matlab kjører jeg en Monte Carlo simulering med Geometrisk Brownsk bevegelse, hvor jeg endrer på parametrene volatilitet (sigma), tidshorisonten og vek...

  14. Bear use of cutthroat trout spawning streams in Yellowstone National Park

    Science.gov (United States)

    Reinhart, D.P.; Mattson, D.J.

    1990-01-01

    Grizzly bears (Ursus arctos) and black bears (U. americanus) prey on spawning cutthroat trout (Oncorhynchus clarki, formerly known as Salmo clarki) in tributary streams of Yellowstone Lake. These tributary streams were surveyed from 1985 to 1987 to determine the presence and level of trout spawning activity and bear use. Indices were developed to enumerate spawner density and levels of bear use. Of 124 known tributaries of Yellowstone Lake, 48% had a spawning run. Of these spawning streams, 93% had associated bear activity, and 61% had associated evidence of bear fishing. Bears were apparently using more spawning streams and fish compared to 10 years earlier. Bear use of cutthroat trout spawning streams appeared to be largely a positive function of volumetric spawner density. We hypothesize that abundance and quality of stream-side vegetation relative to other foraging options influenced bear use. Intra- and interspecific avoidance among bears was suggested by patterns of spawning stream use. Less bear use of spawning streams than expected occurred within 1 km of park developments.

  15. Radio-transmitted electromyogram signals as indicators of swimming speed in lake trout and brown trout

    DEFF Research Database (Denmark)

    Thorstad, E.B.; Økland, F.; Koed, Anders;

    2000-01-01

    Swimming speed and average electromyogram (EMG) pulse intervals were highly correlated in individual lake trout Salvelinus namaycush (r(2)=0.52-0.89) and brown trout Salmo trutta (r(2)=0.45-0.96). High correlations were found also for pooled data in both lake trout (r(2)=0.90) and brown trout of...... the Ema stock (r(2)=0.96) and Laerdal stock (r(2)=0.96). The linear relationship between swimming speed and average EMG pulse intervals differed significantly among lake trout and the brown trout stocks. This successful calibration of EMGs to swimming speed opens the possibility of recording swimming...... speed of free swimming lake trout and brown trout in situ. EMGs can also be calibrated to oxygen consumption to record energy expenditure. (C) 2000 The Fisheries Society of the British Isles...

  16. Survival of Trout Strains as Affected by Limnological Parameters

    OpenAIRE

    Wurtsbaugh, Wayne A.

    1988-01-01

    Prior work at East Canyon Reservoir, Utah indicated that adult trout are important predators of stocked juvenile rainbow trout. Brown trout, in particular, were exclusively piscivorous when th~y exceeded 185 mm standard length. Fish became increasingly important in the diet of cutthroat trout greater than 330 mm. The purpose of this study was to further document the effect of adult trout on survival of juvenile rainbow trout in mid-elevation reservoirs. Causey Reservoir was chosen because it ...

  17. Copper uptake across rainbow trout gills: mechanisms of apical entry

    DEFF Research Database (Denmark)

    Grosell, Martin Hautopp; Wood, C. M.

    2002-01-01

    Copper, Homeostasis, sodium uptake, copper/sodium interactions, gill, rainbow trout, Oncorhynchus mykiss......Copper, Homeostasis, sodium uptake, copper/sodium interactions, gill, rainbow trout, Oncorhynchus mykiss...

  18. An ecological risk assessment of the acute and chronic effects of the herbicide clopyralid to rainbow trout (Oncorhynchus mykiss)

    Science.gov (United States)

    Fairchild, J.F.; Allert, A.L.; Feltz, K.P.; Nelson, K.J.; Valle, J.A.

    2009-01-01

    Clopyralid (3,6-dichloro-2-pyridinecarboxylic acid) is a pyridine herbicide frequently used to control invasive, noxious weeds in the northwestern United States. Clopyralid exhibits low acute toxicity to fish, including the rainbow trout (Oncorhynchus mykiss) and the threatened bull trout (Salvelinus confluentus). However, there are no published chronic toxicity data for clopyralid and fish that can be used in ecological risk assessments. We conducted 30-day chronic toxicity studies with juvenile rainbow trout exposed to the acid form of clopyralid. The 30-day maximum acceptable toxicant concentration (MATC) for growth, calculated as the geometric mean of the no observable effect concentration (68 mg/L) and the lowest observable effect concentration (136 mg/L), was 96 mg/L. No mortality was measured at the highest chronic concentration tested (273 mg/L). The acute:chronic ratio, calculated by dividing the previously published 96-h acutely lethal concentration (96-h ALC50; 700 mg/L) by the MATC was 7.3. Toxicity values were compared to a four-tiered exposure assessment profile assuming an application rate of 1.12 kg/ha. The Tier 1 exposure estimation, based on direct overspray of a 2-m deep pond, was 0.055 mg/L. The Tier 2 maximum exposure estimate, based on the Generic Exposure Estimate Concentration model (GEENEC), was 0.057 mg/L. The Tier 3 maximum exposure estimate, based on previously published results of the Groundwater Loading Effects of Agricultural Management Systems model (GLEAMS), was 0.073 mg/L. The Tier 4 exposure estimate, based on published edge-of-field monitoring data, was estimated at 0.008 mg/L. Comparison of toxicity data to estimated environmental concentrations of clopyralid indicates that the safety factor for rainbow trout exposed to clopyralid at labeled use rates exceeds 1000. Therefore, the herbicide presents little to no risk to rainbow trout or other salmonids such as the threatened bull trout. ?? 2009 US Government.

  19. Microorganisms in Food--Their Significance and Methods of Enumeration.

    Science.gov (United States)

    Andrews, S.

    1980-01-01

    Described are laboratory methods for enumerating microorganisms in food. These methods are utilized to determine if foods are potentially hazardous to the consumer due to high concentrations of microorganisms. Discussed are indicator organisms, including coliforms, interococci, yeasts, and molds; food poisoning organisms (staphylococci and…

  20. Mupirocin-mucin agar for selective enumeration of Bifidobacterium bifidum

    Czech Academy of Sciences Publication Activity Database

    Pechar, R.; Rada, V.; Parafati, L.; Musilová, S.; Bunešová, V.; Vlková, E.; Killer, Jiří; Mrázek, Jakub; Kmeť, V.; Svejštil, R.

    2014-01-01

    Roč. 191, č. 1 (2014), s. 32-35. ISSN 0168-1605 R&D Projects: GA ČR GA13-08803S Institutional support: RVO:67985904 Keywords : probiotic s * Bifidobacterium bifidum * selective enumeration Subject RIV: EE - Microbiology, Virology Impact factor: 3.082, year: 2014

  1. Evidence of excretion of Schmallenberg virus in bull semen.

    Science.gov (United States)

    Ponsart, Claire; Pozzi, Nathalie; Bréard, Emmanuel; Catinot, Virginie; Viard, Guillaume; Sailleau, Corinne; Viarouge, Cyril; Gouzil, Julie; Beer, Martin; Zientara, Stéphan; Vitour, Damien

    2014-01-01

    Schmallenberg virus (SBV) is a novel orthobunyavirus, discovered in Germany in late 2011. It mainly infects cattle, sheep and goats and could lead to congenital infection, causing abortion and fetal abnormalities. SBV is transmitted by biting midges from the Culicoides genus and there is no evidence that natural infection occurs directly between ruminants. Here, we could detect SBV RNA in infected bull semen using qRT-PCR (three bulls out of seven tested positive; 29 positive semen batches out of 136). We also found that highly positive semen batches from SBV infected bulls can provoke an acute infection in IFNAR-/- mice, suggesting the potential presence of infectious virus in the semen of SBV infected bulls. PMID:24708245

  2. Bull Mountain Basin Boundary from 1999 National Coal Resource Assessment

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — This ArcView shapefile contains a polygon representing the extent of the Bull Mountain coal basin boundary. This theme was created specifically for the National...

  3. Perineal Bull Gore with Urinary Bladder Perforation and Pneumoperitoneum

    OpenAIRE

    R, Santhosh; Barad, Arun Kumar; Ghalige, Hemanth Sureshwara; K, Sridartha; Sharma M, Birkumar

    2013-01-01

    Animal related injuries are frequently reported in India and other countries, where bulls are used for sporting events as well as in places where farming and livestock rearing is practised. The presentation is, many times, atypical and misleading as well.

  4. Larger eggs in resident brown trout living in sympatry with anadromous brown trout

    DEFF Research Database (Denmark)

    Olofsson, H.; Mosegaard, Henrik

    1999-01-01

    Freshwater resident brown trout (Salmo trutta L.) in the stream Jorlandaan (southwestern Sweden) had larger eggs (range of actual mean egg wet weights, 65.9-108.5 mg) than both sympatric migratory trout (76.8-84.2 mg) and trout from five other Swedish streams with allopatric resident (23.7-80.1 mg...

  5. Growth, morphology, and developmental instability of rainbow trout, Yellowstone cutthroat trout, and four hybrid generations

    Science.gov (United States)

    Ostberg, C.O.; Duda, J.J.; Graham, J.H.; Zhang, S.; Haywood, K. P., III; Miller, B.; Lerud, T.L.

    2011-01-01

    Hybridization of cutthroat trout Oncorhynchus clarkii with nonindigenous rainbow trout O. mykiss contributes to the decline of cutthroat trout subspecies throughout their native range. Introgression by rainbow trout can swamp the gene pools of cutthroat trout populations, especially if there is little selection against hybrids. We used rainbow trout, Yellowstone cutthroat trout O. clarkii bouvieri, and rainbow trout × Yellowstone cutthroat trout F1 hybrids as parents to construct seven different line crosses: F1 hybrids (both reciprocal crosses), F2 hybrids, first-generation backcrosses (both rainbow trout and Yellowstone cutthroat trout), and both parental taxa. We compared growth, morphology, and developmental instability among these seven crosses reared at two different temperatures. Growth was related to the proportion of rainbow trout genome present within the crosses. Meristic traits were influenced by maternal, additive, dominant, overdominant, and (probably) epistatic genetic effects. Developmental stability, however, was not disturbed in F1 hybrids, F2 hybrids, or backcrosses. Backcrosses were morphologically similar to their recurrent parent. The lack of developmental instability in hybrids suggests that there are few genetic incompatibilities preventing introgression. Our findings suggest that hybrids are not equal: that is, growth, development, character traits, and morphology differ depending on the genomic contribution from each parental species as well as the hybrid generation.

  6. A blood chemistry profile for lake trout

    Science.gov (United States)

    Edsall, Carol Cotant

    1999-01-01

    A blood chemistry profile for lake trout Salvelinus namaycush was developed by establishing baseline ranges for several clinical chemistry tests (glucose, total protein, amylase, alkaline phosphatase, alanine aminotransferase, aspartate aminotransferase, creatine kinase, calcium, and magnesium). Measurements were made accurately and rapidly with a Kodak Ektachem DT60 Analyzer and the Ektachem DTSC Module. Blood serum was collected from both laboratory-reared lake trout (1978 and 1986 year-classes) and feral spawning trout from Lake Michigan and then analyzed in the laboratory. No clinically significant differences were found between samples analyzed fresh and those frozen for 1 or 6 weeks. The ranges in chemistry variables for feral lake trout were generally wider than those for laboratory-reared lake trout, and significant differences existed between male and female feral lake trout for several tests. Blood chemistry profiles also varied seasonally on fish sampled repeatedly.

  7. Evidence of excretion of Schmallenberg virus in bull semen

    OpenAIRE

    Ponsart, Claire; Pozzi, Nathalie; Bréard, Emmanuel; Catinot , Virginie; Viard, Guillaume; Sailleau, Corinne; Viarouge, Cyril; Gouzil, Julie; Beer, Martin; Zientara, Stephan; Vitour, Damien

    2014-01-01

    Schmallenberg virus (SBV) is a novel orthobunyavirus, discovered in Germany in late 2011. It mainly infects cattle, sheep and goats and could lead to congenital infection, causing abortion and fetal abnormalities. SBV is transmitted by biting midges from the Culicoides genus and there is no evidence that natural infection occurs directly between ruminants. Here, we could detect SBV RNA in infected bull semen using qRT-PCR (three bulls out of seven tested positive; 29 positive semen batches ou...

  8. SPERM DNA INTEGRITY IN BUFFALO, BULL AND STALLION

    OpenAIRE

    Serafini, Rosanna

    2015-01-01

    The interest in sperm DNA integrity evaluation and its relationship to subfertility and infertility loaded to development of several sperm DNA assays. The aim of this study was to compare several sperm DNA assays in buffaloes, bulls and stallions, and to identify the relationships between those DNA assays and traditional sperm features. In Italian Mediterranean Buffalo (IMB) bulls traditional sperm features (motility, viability, acrosome integrity and morphology), sperm DNA integrity (neutral...

  9. Geographical Distribution of Trout Farming in Turkey

    OpenAIRE

    Şahin, Güven; Erbilen, Süheyla Üçışık

    2011-01-01

    Turkey is a peninsula, surrounded by seas on three sides, with a total coastline of 8.333km. As a result of its heritage from ancient inland living culture, Turkey has a limited development in fishery production. However, there have been significant efforts in developing Trout Farming, compared to the other aquaculture products in Turkey. The recent developments in trout farming in Turkey have led to an increase in trout productions, providing alternatives for public nutrition. This study aim...

  10. GEOGRAPHICAL DISTRIBUTION OF TROUT FARMING IN TURKEY

    OpenAIRE

    Şahin, Güven; Erbilen, Süheyla Üçışık

    2011-01-01

    Turkey is a peninsula, surrounded by seas on three sides, with a total coastline of 8.333km. As a result of its heritage from ancient inland living culture, Turkey has a limited development in fishery production. However, there have been significant efforts in developing Trout Farming, compared to the other aquaculture products in Turkey. The recent developments in trout farming in Turkey have led to an increase in trout productions, providing alternatives for public nutrition. This study aim...

  11. Danish focus on organic trout fry

    OpenAIRE

    Jokumsen, Alfred

    2015-01-01

    RobustFish will strengthen the development of Danish organic trout production. According to the EU Regulation on Organic Aquaculture, the fish production shall exclusively be based on organic fry from 2016. Particularly, in organic farming, medication is only allowed within very strict limits. Therefore, the robustness of the fry to diseases is crucial. Especially, this concerns the most serious trout fry disease in Danish aquaculture, Rainbow Trout Fry Syndrome (RTFS). The robustness of the ...

  12. Boosting the quality of organic trout fry

    OpenAIRE

    Jokumsen, Alfred

    2015-01-01

    RobustFish will strengthen the development of Danish organic trout production. According to the EU Regulation on Organic Aquaculture, the fish production shall exclusively be based on organic fry from 2016. Particularly, in organic farming, medication is only allowed within very strict limits. Therefore, the robustness of the fry to diseases is crucial. Especially, this concerns the most serious trout fry disease in Danish aquaculture, Rainbow Trout Fry Syndrome (RTFS). The robustness of the ...

  13. On the Performance and Pruning Power of Different Join Enumeration Strategies

    OpenAIRE

    Viktor Leis

    2016-01-01

    To find the optimal join order two different generative join enumeration strategies have been proposed. The most commonly used one is dynamic programming which proceeds bottom-up. The alternative is top down enumeration with memoization. For both strategies algorithms exist that enumerate only solutions without cartesian products, which is a commonly used heuristics. With top-down enumeration it is possible to further improve optimization time by pruning the search space while still obtaining...

  14. Use of similar habitat by cutthroat trout and brown trout in a regulated river during winter

    Science.gov (United States)

    Dare, M.R.; Hubert, W.A.

    2003-01-01

    Few differences in habitat use were observed between cutthroat trout and brown trout during winter in the Shoshone River, a regulated river in northwestern Wyoming. Radio-tagged fish of 20-30 cm total length were found in pool habitat five to six times more frequently than would be expected if they were using pools in proportion to pool availability. Nevertheless, run habitat was most frequently used by both species. The microhabitat characteristics at locations of each species were similar when in both pools and runs, however, habitat use was variable suggesting that a variety of microhabitats were suitable over-wintering habitat. Brown trout were more frequently associated with boulder cover than were cutthroat trout. Cutthroat trout used large pools that provided refuge from high water velocities more frequently that brown trout. Cutthroat trout and brown trout were found at similar distances from the bank except in late February when cutthroat trout were farther from the bank. Both species moved frequently during the winter, but cutthroat trout showed a greater propensity than brown trout to move long distances. This study suggests that during a mild winter in a stable environment, these species were able to overwinter successfully in a variety of habitats.

  15. Adrenal involvement in the biostimulatory effect of bulls

    Directory of Open Access Journals (Sweden)

    Berardinelli James G

    2007-08-01

    Full Text Available Abstract Background The objective was to evaluate if cortisol concentrations are associated with the resumption of luteal activity in postpartum, primiparous cows exposed to bulls. The hypotheses were that 1 interval from start of exposure to resumption of luteal activity; 2 proportions of cows that resumed luteal function during the exposure period; and 3 cortisol concentrations do not differ among cows exposed or not exposed to bulls (Exp. 1, and cows continuously exposed to bull or steer urine (Exp. 2. Methods In Exp. 1, 28 anovular cows were exposed (BE; n = 13 or not exposed (NE; n = 15 to bulls for 30 d at 58 d after calving. In Exp. 2, 38 anovular cows were fitted with a controlled urine delivery device at 45 d after calving and exposed continuously (24 h/d to bull (BUE; n = 19 or steer (SUE; n = 19 urine. Length of exposure was ~64 d. Blood samples were collected from each cow on D 0 and every 3 d throughout exposure periods in both experiments and assayed for progesterone. Cortisol was assayed in samples collected on D 0, 8, 16, and 24 in Exp. 1; and, D 0, 19, 38, and 57 in Exp. 2. Results In Exp. 1, interval from the start of exposure to resumption of luteal activity was shorter (P Conclusion We conclude that the physical presence of bulls stimulates resumption of luteal activity and is coincident with increased cortisol concentrations, and hypothesize a possible association between adrenal activation and the biostimulatory effect of bulls.

  16. Emotional interference in enumeration: A working memory perspective

    Directory of Open Access Journals (Sweden)

    CHRISTIAN STAMOV ROßNAGEL

    2008-12-01

    Full Text Available We investigated the influence of emotional stimuli on enumeration. On each trial a set of 1 to 10 affectively positive, negative or neutral words were presented for 200 ms each. Participants counted the words after each trial. Error was greater and response times were longer for negative and positive words than for neutral words. Most importantly, this effect was shown only for set sizes within the countable range (set sizes between 1 and 7 words, with no effect in error rates for sets of 1 to 3 items. The effect disappeared for set sizes in the uncountable range (i.e., 8 to 10 words. Results underline the important role of the central executive in enumeration.

  17. Enumeration of absolute cell counts using immunophenotypic techniques.

    Science.gov (United States)

    Mandy, F; Brando, B

    2001-05-01

    Absolute counting of cells or cell subsets has a number of significant clinical applications: monitoring the disease status of HIV-infected patients, enumerating residual white blood cells in leukoreduced blood products, and assessing immunodeficiency in a variety of situations. The single-platform method (flow cytometry alone) has emerged as the method of choice for absolute cell enumeration. This technology counts only the cells of interest in a precisely determined blood volume. Exact cell identification is accomplished by a logical electronic gating algorithm capable of identifying lineage-specific immunofluorescent markers. Exclusion of unwanted cells is automatic. This extensive and detailed unit presents protocols for both volumetric and flow-rate determination of residual white blood cells and of leukocyte subsets. PMID:18770719

  18. Enumeration of self-avoiding walks on the square lattice

    International Nuclear Information System (INIS)

    We describe a new algorithm for the enumeration of self-avoiding walks on the square lattice. Using up to 128 processors on a HP Alpha server cluster we have enumerated the number of self-avoiding walks on the square lattice to length 71. Series for the metric properties of mean-square end-to-end distance, mean-square radius of gyration and mean-square distance of monomers from the end points have been derived to length 59. An analysis of the resulting series yields accurate estimates of the critical exponents γ and ν confirming predictions of their exact values. Likewise we obtain accurate amplitude estimates yielding precise values for certain universal amplitude combinations. Finally we report on an analysis giving compelling evidence that the leading non-analytic correction-to-scaling exponent Δ1 = 3/2

  19. Rainbow Trout Innate Immunity against Flavobacterium psychrophilum

    Science.gov (United States)

    Flavobacterium psychrophilum infection is associated with significant loss of rainbow trout production in the U.S. and other parts of the world. In 2005, a selective breeding program was initiated at the National Center for Cool and Cold Water Aquaculture to improve rainbow trout innate resistance ...

  20. Farming of Freshwater Rainbow Trout in Denmark

    DEFF Research Database (Denmark)

    Jokumsen, Alfred; Svendsen, Lars Moeslund

    Textbook on Farming of Freshwater Rainbow Trout in Denmark. Danish edition with the title: Opdræt af regnbueørred i Danmark......Textbook on Farming of Freshwater Rainbow Trout in Denmark. Danish edition with the title: Opdræt af regnbueørred i Danmark...

  1. Combinatorial Constructions for Sifting Primes and Enumerating the Rationals

    OpenAIRE

    Gnang, Edinah K.; Tonde, Chetan

    2012-01-01

    We describe a combinatorial approach for investigating properties of rational numbers. The overall approach rests on structural bijections between rational numbers and familiar combinatorial objects, namely rooted trees. We emphasize that such mappings achieve much more than enumeration of rooted trees. We discuss two related structural bijections. The first corresponds to a bijective map between integers and rooted trees. The first bijection also suggests a new algorithm for sifting primes. ...

  2. Enumeration of islets by nuclei counting and light microscopic analysis

    OpenAIRE

    Pisania, Anna; Papas, Klearchos K.; Powers, Daryl E.; Rappel, Michael J.; Omer, Abdulkadir; Bonner-Weir, Susan; Weir, Gordon C.; Colton, Clark K.

    2010-01-01

    Islet enumeration in impure preparations by conventional dithizone staining and visual counting is inaccurate and operator dependent. We examined nuclei counting for measuring the total number of cells in islet preparations, and we combined it with morphological analysis by light microscopy (LM) for estimating the volume fraction of islets in impure preparations. Cells and islets were disrupted with lysis solution and shear, and accuracy of counting successively diluted nuclei suspensions was...

  3. An Algebraic Representation of Graphs and Applications to Graph Enumeration

    OpenAIRE

    Ângela Mestre

    2013-01-01

    We give a recursion formula to generate all the equivalence classes of connected graphs with coefficients given by the inverses of the orders of their groups of automorphisms. We use an algebraic graph representation to apply the result to the enumeration of connected graphs, all of whose biconnected components have the same number of vertices and edges. The proof uses Abel’s binomial theorem and generalizes Dziobek’s induction proof of Cayley’s formula.

  4. Catalan Number and Enumeration of Maximal Outerplanar Graphs

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    Catalan number is an important class of combinatorial numbers. The maximal outerplanar graphs are important in graph theory. In this paper some formulas to enumerate the numbers of maximal outerplanar graphs by means of the compressing graph and group theory method are given first. Then the relationships between Catalan numbers and the numbers of labeled and unlabeled maximal outerplanar graphs are presented. The computed results verified these formulas.

  5. Bath vaccination of rainbow trout against yersiniosis

    DEFF Research Database (Denmark)

    Raida, Martin Kristian; Buchmann, Kurt

    2007-01-01

    Studies have been conducted on the temperature-dependent effect of bath vaccination of rainbow trout against Yersinia ruckeri O1. Protection of rainbow trout fry against challenge, following bath vaccination with a bacterin of Yersinia ruckeri O1, the bacterial pathogen causing enteric red mouth...... disease (ERM), was investigated at 5, 15 and 25° C. Rainbow trout fry were kept at controlled temperatures for two month before they were immersed in a commercial Yersinia ruckeri O1 bacterin for 10 minutes. Control groups were sham vaccinated using pure water. Fish were challenged with Yersinia ruckeri O......1 one and two month post vaccination at the three temperatures. Protection of vaccinated fish was seen one and two month post vaccination in rainbow trout reared at 15° C. There was no effect of vaccination in rainbow trout reared at 5 and 25° C. Spleen tissue was sampled from 5 vaccinated and 5...

  6. Evaluating bull fertility based on non-return method

    Directory of Open Access Journals (Sweden)

    Prka Igor

    2012-01-01

    Full Text Available In order to evaluate the results of reproductive cows and heifers, different parameters of fertility are used, such as the service period, insemination index, intercalving time and others, and of the breeding bulls the values obtained through non-return. An ejaculate is taken up for further processing by veterinary centres only provided it meets the prescribed quality parameters. Rating semen parameters includes a macroscopic (volume, colour, consistency, smell and pH and a microscopic evaluation (mobility, density, percentage of live sperm and abnormal and damaged sperm. In addition to sperm quality and the fertility of the female animal, the results of the non-return method are also influenced by a number of exogenous causes (season, age, race, insemination techniques that have no small impact on the end result of insemination - pregnancy. In order to obtain more objective results of the fertility of bulls the following tasks were undertaken, namely: 1. to calculate with the non-return method the fertility of bulls in over 10,000 cows inseminated for the first time during a period of 6 years; and 2. to analyze the impact of semen quality, season, age of cow and bull, and the bull breed on the results of fertility.

  7. Interactions Between Trout and Sculpin: Consequences of Trout Introductions for a Native Fish

    Science.gov (United States)

    Henry Zimmerman, J. K.; Vondracek, B.

    2005-05-01

    We examined interactions between a native (brook) and a nonnative (brown) trout with native slimy sculpin, to test whether introductions of a nonnative salmonid has an effect on growth and diet of sculpin where a native trout was present. Enclosures (1m2) were stocked with fish (five treatments: juvenile brown trout with sculpin, juvenile brook trout with sculpin, and single species controls) at three densities. Replicates of each treatment were placed in Valley Creek, MN, and fish growth rates were measured over six 38-day experiments, conducted over three years. We examined growth of each species in combined-species treatments versus growth of each species alone. We did not find evidence of competition between brook trout and sculpin, regardless of density or fish size. However, we observed competition between brown trout and sculpin, which depended on initial mass of each species. Sculpin gained greater mass when alone than with brown trout when sculpin size was large (>17g). Likewise, brown trout gained greater mass alone than with sculpin when brown trout size was large (>26g). We suggest that differences in morphology and foraging modes between the two native species allow them to coexist without competition, whereas nonnative brown trout compete with sculpin.

  8. An ecological risk assessment of the exposure and effects of 2,4-D acid to rainbow trout (Onchorhyncus mykiss)

    Science.gov (United States)

    Fairchild, J.F.; Feltz, K.P.; Allert, A.L.; Sappington, L.C.; Nelson, K.J.; Valle, J.A.

    2009-01-01

    30-day safety factor of 559 (e.g., 76/0.163). Assessment of the exposure and response data presented herein indicates that use of 2,4-D acid for invasive weed control in aquatic and terrestrial habitats poses no substantial risk to growth or survival of rainbow trout or other salmonids, including the threatened bull trout (Salvelinus confluentus). ?? 2009 US Government.

  9. Effects of Dietary Zilpaterol Hydrochloride on Growth Performance, Carcass Characteristics, and Serum Compositions of Hanwoo Bulls

    OpenAIRE

    Kim, Jong Kyoo; Chung, Ki Yong; Kim, Hyeong Cheol; Lee, Eun Mi; Chang, Sun Sik; Kwon, Eung Gi; Johnson, Bradley J.; Gotoh, Takafumi; Goto, Takafumi

    2016-01-01

    This study was conducted to determine the effects of zilpaterol hydrochloride (ZH) on the growth performance and carcass characteristics of Hanwoo bulls. Twenty Hanwoo bulls (653 ± 22.1) were randomly assigned by body weight (BW) to determine the effects of feeding zilpaterol hydrochloride (Ten bulls with 8.3 mg/kg ZH and ten bulls without ZH) on the ultrasound measurement, carcass traits, and serum compositions. Treatments comprised diets with and without ZH supplemented for 20 days prior to...

  10. BRUCELLOSIS IN BULLS: AN OVERVIEW OF THE DISEASE IN BRAZIL, EMPHASIZING DIAGNOSES IN BULLS AND ITS IMPORTANCE IN AGRIBUSINESS

    Directory of Open Access Journals (Sweden)

    MÁRCIO GARCIA RIBEIRO

    2012-11-01

    Full Text Available Bovine brucellosis, caused by Brucella abortus, is recognized as a chronical evolution disease with zoonotic potential what causes great loss in cattle herd due to abortion, impaired births, early animal discarding, reduction on milk and meat production as well as restriction within animal product international trade which is of high importance for national agribusiness. In bulls the disease is restricted to genital tract, characterized by seminal vesiculite and inflamation of accessory glands of the male reproductive system. Unlike cows, in bulls infection by B. abortus induces low levels or absence of serum antibodies what makes it difficult serodiagnosis by conventional methods. This paper reviewed the main aspects of brucellosis in bulls in Brazil, emphasizing diagnosis methodology and its importance to agribusiness.

  11. Patterns of hybridization among cutthroat trout and rainbow trout in northern Rocky Mountain streams

    OpenAIRE

    McKelvey, Kevin S.; Young, Michael K.; Taylor M Wilcox; Bingham, Daniel M.; Pilgrim, Kristine L.; Schwartz, Michael K.

    2016-01-01

    Abstract Introgressive hybridization between native and introduced species is a growing conservation concern. For native cutthroat trout and introduced rainbow trout in western North America, this process is thought to lead to the formation of hybrid swarms and the loss of monophyletic evolutionary lineages. Previous studies of this phenomenon, however, indicated that hybrid swarms were rare except when native and introduced forms of cutthroat trout co‐occurred. We used a panel of 86 diagnost...

  12. Seasonal Variations in Relative Weight of Lake Trout (Salvelinus namaycush), Kokanee Salmon (Oncorhynchus nerka), Rainbow Trout (Onocorhynchus mykiss), and Brown Trout (Salmo trutta) in Blue Mesa Reservoir, Colorado

    OpenAIRE

    Midas, Madeline; Williams, Asia; Cooper, Cindy; Courtney, Michael

    2013-01-01

    Blue Mesa Reservoir is the largest body of water in Colorado and is located on the western slope of the Rocky Mountains at an elevation of 7520 feet. Blue Mesa Reservoir contains recreationally important populations of lake trout (Salvelinus namaycush), kokanee salmon (Oncorhynchus nerka), rainbow trout (Onocorhynchus mykiss), and brown trout (Salmo trutta). A management challenge in recent years has been the overpopulation of lake trout, which has led to a steep decline in abundance of kokan...

  13. Path enumeration program (ENUMPTH) for physical protection effectiveness evaluation

    International Nuclear Information System (INIS)

    Descriptions are presented of the structure and of ENUMPTH, a program for enumerating paths which an adversary might follow in attempting defeat of physical protection systems. The paths are evaluated in terms of the probability of detecting and then interrupting the adversary as the paths are traversed. The program is intended to be practical in orientation, selecting all paths which meet some specified minimum criteria. The nature of the physical protection issue suggests that all such paths may be of equal interest to analysts who are concerned with a total facility. An example is given to demonstrate the program's applicability to practical problems

  14. Enumeration Bounds via an Isoperimetric-Type Inequality

    Science.gov (United States)

    Madras, N.

    2006-06-01

    In 1949, Loomis and Whitney published a geometrically intuitive inequality that bounds the cardinality of a d-dimensional set in terms of the cardinalities of its projections onto the coordinate hyperplanes. We show how this inequality can be used to prove two results in the asymptotic enumeration of lattice animals: a bound on the critical exponent for the number of lattice animals in arbitrary dimension, and a bound on the growth constant for the number of ''almost unknotted'' embeddings of graphs in the cubic lattice.

  15. Path enumeration program (ENUMPTH) for physical protection effectiveness evaluation

    Energy Technology Data Exchange (ETDEWEB)

    Hall, R.C.

    1978-10-01

    Descriptions are presented of the structure and of ENUMPTH, a program for enumerating paths which an adversary might follow in attempting defeat of physical protection systems. The paths are evaluated in terms of the probability of detecting and then interrupting the adversary as the paths are traversed. The program is intended to be practical in orientation, selecting all paths which meet some specified minimum criteria. The nature of the physical protection issue suggests that all such paths may be of equal interest to analysts who are concerned with a total facility. An example is given to demonstrate the program's applicability to practical problems.

  16. Dynamics of microRNAs in bull spermatozoa

    Directory of Open Access Journals (Sweden)

    Govindaraju Aruna

    2012-09-01

    Full Text Available Abstract Background MicroRNAs are small non-coding RNAs that regulate gene expression and thus play important roles in mammalian development. However, the comprehensive lists of microRNAs, as well as, molecular mechanisms by which microRNAs regulate gene expression during gamete and embryo development are poorly defined. The objectives of this study were to determine microRNAs in bull sperm and predict their functions. Methods To accomplish our objectives we isolated miRNAs from sperm of high and low fertility bulls, conducted microRNA microarray experiments and validated expression of a panel of microRNAs using real time RT-PCR. Bioinformatic approaches were carried out to identify regulated targets. Results We demonstrated that an abundance of microRNAs were present in bovine spermatozoa, however, only seven were differentially expressed; hsa-aga-3155, -8197, -6727, -11796, -14189, -6125, -13659. The abundance of miRNAs in the spermatozoa and the differential expression in sperm from high vs. low fertility bulls suggests that the miRNAs possibly play important functions in the regulating mechanisms of bovine spermatozoa. Conclusion Identification of specific microRNAs expressed in spermatozoa of bulls with different fertility phenotypes will help better understand mammalian gametogenesis and early development.

  17. Comparison of Selective Media for the Enumeration of Probiotic Enterococci from Animal Feed

    OpenAIRE

    Weiss, Agnes; Domig, Konrad Johann; Kneifel, Wolfgang

    2005-01-01

    The project »Methods for the Official Control of Probiotics Used as Feed Additives« has been undertaken to develop and validate methods for the selective enumeration and strain identification of six probiotic microorganism genera (enterococci, lactobacilli, bifidobacteria, pediococci, bacilli and yeast). A diversity of media has been used for the detection, isolation and enumeration of enterococci. Aiming at the selective enumeration of enterococci (mainly Enterococcus faecium) present in pro...

  18. Algebraic Techniques for Enumerating Self-Avoiding Walks on the Square Lattice

    OpenAIRE

    Conway, A R; Enting, I. G.; Guttmann, A. J.

    1992-01-01

    We describe a new algebraic technique for enumerating self-avoiding walks on the rectangular lattice. The computational complexity of enumerating walks of $N$ steps is of order $3^{N/4}$ times a polynomial in $N$, and so the approach is greatly superior to direct counting techniques. We have enumerated walks of up to 39 steps. As a consequence, we are able to accurately estimate the critical point, critical exponent, and critical amplitude.

  19. Algebraic Techniques for Enumerating Self-Avoiding Walks on the Square Lattice

    CERN Document Server

    Conway, A R; Guttmann, A J

    1993-01-01

    We describe a new algebraic technique for enumerating self-avoiding walks on the rectangular lattice. The computational complexity of enumerating walks of $N$ steps is of order $3^{N/4}$ times a polynomial in $N$, and so the approach is greatly superior to direct counting techniques. We have enumerated walks of up to 39 steps. As a consequence, we are able to accurately estimate the critical point, critical exponent, and critical amplitude.

  20. Detecting genus in vertex links for the fast enumeration of 3-manifold triangulations

    OpenAIRE

    Burton, Benjamin A.

    2011-01-01

    Enumerating all 3-manifold triangulations of a given size is a difficult but increasingly important problem in computational topology. A key difficulty for enumeration algorithms is that most combinatorial triangulations must be discarded because they do not represent topological 3-manifolds. In this paper we show how to preempt bad triangulations by detecting genus in partially-constructed vertex links, allowing us to prune the enumeration tree substantially. The key idea is to manipulate th...

  1. Hydrography - Class A Wild Trout Streams - points

    Data.gov (United States)

    NSGIC GIS Inventory (aka Ramona) — Class A streams are streams that support a population of wild (natural reproduction) trout of sufficient size and abundance to support a long-term and rewarding...

  2. Hydrography - Class A Wild Trout Streams

    Data.gov (United States)

    NSGIC GIS Inventory (aka Ramona) — Class A streams are streams that support a population of wild (natural reproduction) trout of sufficient size and abundance to support a long-term and rewarding...

  3. Longevity of Lake Superior lake trout

    Science.gov (United States)

    Schram, Stephen T.; Fabrizio, Mary C.

    1998-01-01

    The age structure of mature lake trout Salvelinus namaycush from the Wisconsin waters of Lake Superior increased following a population recovery that has taken place since the 1960s. As the population aged, it became apparent that scales were unreliable aging structures. Beginning in 1986, we examined both scale and sagittal otolith ages from tagged fish with a known period at liberty. We found large discrepancies in scale and sagittal otolith ages of mature fish, such that scale ages were biased low. We estimated lake trout living up to 42 years, which is greater than previously reported from Lake Superior. Investigators studying lake trout population dynamics in the Great Lakes should be aware that lake trout can live longer than previously thought.

  4. A Vegetation Survey of Trout Brook Flowage

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The Trout Brook structure was started in 1963 under the Accelerated Public Works Program and finished in the summer of 1965. There is a 200 foot earthdike, a metal...

  5. Enumeration of islets by nuclei counting and light microscopic analysis.

    Science.gov (United States)

    Pisania, Anna; Papas, Klearchos K; Powers, Daryl E; Rappel, Michael J; Omer, Abdulkadir; Bonner-Weir, Susan; Weir, Gordon C; Colton, Clark K

    2010-11-01

    Islet enumeration in impure preparations by conventional dithizone staining and visual counting is inaccurate and operator dependent. We examined nuclei counting for measuring the total number of cells in islet preparations, and we combined it with morphological analysis by light microscopy (LM) for estimating the volume fraction of islets in impure preparations. Cells and islets were disrupted with lysis solution and shear, and accuracy of counting successively diluted nuclei suspensions was verified with (1) visual counting in a hemocytometer after staining with crystal violet, and automatic counting by (2) aperture electrical resistance measurement and (3) flow cytometer measurement after staining with 7-aminoactinomycin-D. DNA content averaged 6.5 and 6.9 pg of DNA per cell for rat and human islets, respectively, in agreement with literature estimates. With pure rat islet preparations, precision improved with increasing counts, and samples with about ≥160 islets provided a coefficient of variation of about 6%. Aliquots of human islet preparations were processed for LM analysis by stereological point counting. Total nuclei counts and islet volume fraction from LM analysis were combined to obtain the number of islet equivalents (IEs). Total number of IE by the standard method of dithizone staining/manual counting was overestimated by about 90% compared with LM/nuclei counting for 12 freshly isolated human islet research preparations. Nuclei counting combined with islet volume fraction measurements from LM is a novel method for achieving accurate islet enumeration. PMID:20697375

  6. Enumeration of Microbial Populations in Radioactive Environments by Epifluorescence Microscopy

    International Nuclear Information System (INIS)

    Epifluorescence microscopy was utilized to enumerate halophilic bacterial populations in two studies involving inoculated, actual radioactive waste/brine mixtures and pure brine solutions. The studies include an initial set of experiments designed to elucidate potential transformations of actinide-containing wastes under salt-repository conditions, including microbially mediated changes. The first study included periodic enumeration of bacterial populations of a mixed inoculum initially added to a collection of test containers. The contents of the test containers are the different types of actual radioactive waste that could potentially be stored in nuclear waste repositories in a salt environment. The transuranic waste was generated from materials used in actinide laboratory research. The results show that cell numbers decreased with time. Sorption of the bacteria to solid surfaces in the test system is discussed as a possible mechanism for the decrease in cell numbers. The second study was designed to determine radiological and/or chemical effects of 239Pu, 243Am, 237Np, 232Th and 238U on the growth of pure and mixed anaerobic, denitrifying bacterial cultures in brine media. Pu, Am, and Np isotopes at concentrations of -5M, -6M and -4M respectively, and Th and U isotopes -3M were tested in these media. The results indicate that high actinide concentration affected both the bacterial growth rate and morphology. However, relatively minor effects from Am were observed at all tested concentrations with the pure culture

  7. Linear algorithm for lexicographic enumeration of CFG parse trees

    Institute of Scientific and Technical Information of China (English)

    DONG YunMei

    2009-01-01

    We study CFG parse tree enumeration in this paper. By dividing the set of all parse trees into infinite hierarchies according to height of parse tree, the hierarchical lexicographic order on the set of parse trees is established. Then grammar-based algorithms for counting and enumerating CFG parse trees in this order are presented. To generate a parse tree of height n, the time complexity is O(n). If τ is a lowest parse tree for its yield, then O(n) =O(‖τ‖ +1), where ‖τ‖ is the length of the sentence (yield) generated by τ. The sentence can be obtained as a by-product of the parse tree. To compute sentence from its parse tree (needn't be lowest one), the time complexity is O(node)+O(‖τ‖ +1), where node is the number of non-leaf nodes of parse tree τ. To generate both a complete lowest parse tree and its yield at the same time, the time complexity is O(‖τ‖ +1).

  8. FAT TISSUE DISTRIBUTION BETWEEN SUBCUTANEOUS AND INTERMUSCULAR FAT TISSUE IN SIMMENTAL AND BROWN BULLS

    Directory of Open Access Journals (Sweden)

    S. Žgur

    2007-06-01

    Full Text Available Simmental and Brown bulls from progeny testing station were used to evaluate the effect of breed on fat tissue partition between subcutaneous and intermuscular fat. Bulls (37 Brown and 34 Simmental breed were slaughtered at the same degree of fatness. After slaughter carcasses were first cut into different carcass cuts and further on into lean meat, fat, bones and tendons. Fat was divided up into subcutaneous and intermuscular. Simmental bulls were heavier (average cold carcass side weight from Simmental bulls was 167 kg vs 147 kg from Brown bulls at the same percentage of total carcass fat (10.5 %. Breed has no effect on percentage of subcutaneous and intermuscular fat tissue nor on percentage of subcutaneous fat from total carcass fat. Simmental bulls had higher (p<0.05 subcutaneous fat percentage (subcutaneous fat in the cut / total fat in the cut in brisket and flank and lower (p<0.05 in shoulder than Brown bulls.

  9. Spawning Behaviour and the Softmouth Trout Dilemma

    OpenAIRE

    Esteve Manu; McLennan Deborah Ann; Zablocki John Andrew; Pustovrh Gašper; Doadrio Ignacio

    2014-01-01

    Morphological, ecological and molecular data sets do not completely agree on the phylogenetic placement of the softmouth trout, Salmo (Salmothymus) obtusirostris (Heckel). Molecules posit that softmouths are closely related to brown trout, Salmo trutta L. while some morphological, ecological and life history traits place them in the most basal position of the Salmoninae subfamily between grayling (Thymallus) and lenok (Brachymystax). Here we add an additional source of data, behavioural chara...

  10. Movement and survival of brown trout and rainbow trout in an ozark tailwater river

    Science.gov (United States)

    Quinn, J.W.; Kwak, T.J.

    2011-01-01

    We evaluated the movement of adult brown trout Salmo trutta and rainbow trout Oncorhynchus mykiss in relation to a catch-andrelease area in the White River downstream from Beaver Dam, Arkansas. Nine fish of each species were implanted with radio transmitters and monitored from July 1996 to July 1997. The 1.5- km river length of a catch-and-release area (closed to angler harvest) was greater than the total linear range of 72% of the trout (13 of 18 fish), but it did not include two brown trout spawning riffles, suggesting that it effectively protects resident fish within the catch-and-release area except during spawning. The total detected linear range of movement varied from 172 to 3,559 m for brown trout and from 205 to 3,023mfor rainbow trout. The movements of both species appeared to be generally similar to that in unregulated river systems. The annual apparent survival of both trout species was less than 0.40, and exploitation was 44%.Management to protect fish on spawning riffles may be considered if management for wild brown trout becomes a priority. ?? American Fisheries Society 2011.

  11. Does the introduced brook trout ( Salvelinus fontinalis) affect growth of the native brown trout ( Salmo trutta)?

    Science.gov (United States)

    Korsu, Kai; Huusko, Ari; Muotka, Timo

    2009-03-01

    Non-native brook trout have become widely established in North European streams. We combined evidence from an artificial-stream experiment and drainage-scale field surveys to examine whether brook trout suppressed the growth of the native brown trout (age 0 to age 2). Our experimental results demonstrated that brown trout were unaffected by the presence of brook trout but that brook trout showed reduced growth in the presence of brown trout. However, the growth reduction only appeared in the experimental setting, indicating that the reduced spatial constraint of the experimental system may have forced the fish to unnaturally intense interactions. Indeed, in the field, no effect of either species on the growth of the putative competitor was detected. These results caution against uncritical acceptance of findings from small-scale experiments because they rarely scale up to more complex field situations. This and earlier work suggest that the establishment of brook trout in North European streams has taken place mainly because of the availability of unoccupied (or underutilized) niche space, rather than as a result of species trait combinations or interspecific competition per se.

  12. Brown Trout removal effects on short-term survival and movement of Myxobolus cerebralis-resistant rainbow trout

    Science.gov (United States)

    Fetherman, Eric R.; Winkelman, Dana L.; Bailey, Larissa L.; Schisler, George J.; Davies, K.

    2015-01-01

    Following establishment of Myxobolus cerebralis (the parasite responsible for salmonid whirling disease) in Colorado, populations of Rainbow Trout Oncorhynchus mykissexperienced significant declines, whereas Brown Trout Salmo trutta densities increased in many locations across the state, potentially influencing the success of M. cerebralis-resistant Rainbow Trout reintroductions. We examined the effects of Brown Trout removal on the short-term (3-month) survival and movement of two crosses of reintroduced, M. cerebralis-resistant Rainbow Trout in the Cache la Poudre River, Colorado. Radio frequency identification passive integrated transponder tags and antennas were used to track movements of wild Brown Trout and stocked Rainbow Trout in reaches where Brown Trout had or had not been removed. Multistate mark–recapture models were used to estimate tagged fish apparent survival and movement in these sections 3 months following Brown Trout removal. A cross between the German Rainbow Trout and Colorado River Rainbow Trout strains exhibited similar survival and movement probabilities in the reaches, suggesting that the presence of Brown Trout did not affect its survival or movement. However, a cross between the German Rainbow Trout and Harrison Lake Rainbow Trout exhibited less movement from the reach in which Brown Trout had been removed. Despite this, the overall short-term benefits of the removal were equivocal, suggesting that Brown Trout removal may not be beneficial for the reintroduction of Rainbow Trout. Additionally, the logistical constraints of conducting removals in large river systems are substantial and may not be a viable management option in many rivers.

  13. Survival of Trout Strains as Affected by Limnological Parameters

    OpenAIRE

    Wurtsbaugh, Wayne A.; Modde, Timothy; Luecke, Chris; Courtney, Cheryl

    1990-01-01

    Juvenile rainbow trout Oncorhynchus mykiss. (ca. 80 mm S.L.) stocked into mid-elevation reservoirs in Utah are vulnerable to predation from piscivorous fish and birds. I determined how effectively juvenile trout used cover to avoid these predators by using direct observations (snorkel transects) on habitat selection in two reservoirs. Observations of juvenile trout were conducted within five weeks of stocking in 1988 and 1989. During the day juvenile trout were abundant in complex inshore hab...

  14. THE PERFORMANCE OF JAVA AND ONGOLE CROSSBRED BULL UNDER INTENSIVE FEEDING MANAGEMENT

    Directory of Open Access Journals (Sweden)

    C.M.S. Lestari

    2011-06-01

    Full Text Available This study was set up to evaluate the performance of Java and Ongole Crossbred (OC bulls fed concentrate and rice straw. A total of four Java bulls and four OC bulls were used in this experiment. The bulls were fed concentrates (50% of the total dry matter feed requirement and rice straw (ad libitum. The concentrates were consisted of rice bran, beer waste product, copra meal, minerals, with crude protein (CP and total digestible nutrients (TDN contents of 15.32% and 73.09%, respectively. The average daily gain (ADG, dry matter intake (DMI, protein and energy intake, and feed conversion ratio (FCR were observed. The results of this study showed that the ADG, DMI, CP and TDN intake, and FCR were not significantly different (p> 0.05. The ADG of Java and OC bulls were 0.58 kg and 0.78 kg, respectively. The averages of DMI, CP and TDN intake were 6.59 kg (2.09% of BW, 0.81 kg and 4.34 kg for Java bulls whereas for OC bulls were 6.42 kg (2.11% of BW, 0.78 kg, and 4.20 kg, respectively. The FCR of Java bulls was 11.49 and those of OC bulls was 9.21. It can be concluded that Java and OC bulls raised intensively and fed concentrate and rice straw had the similar performance.

  15. Concentrate levels of crossbred bulls slaughtered at 16 or 22 months: performance and carcass characteristics

    Directory of Open Access Journals (Sweden)

    Adriana Pinto

    2015-05-01

    Full Text Available This study was performed to assess the animal performance of 97 bulls, ½ Purunã vs. ½ Canchim, that were slaughtered at 16 (16M or 22 (22M months with three concentrate levels (0.8, 1.2, and 1.6% of body weight (BW. The initial body weight was lower for the 16M bulls. The final body weight and hot carcass weights were similar between the two slaughter ages. The hot carcass dressing was higher for 22M bulls. The average daily gain was higher for 16M bulls. The feed intake and dry matter feed conversion were similar between 16 and 22M bulls. The carcass length, marbling, and bone percentage were lower for 16M bulls. However, the Longissimus dorsi muscle area was higher for 16M bulls. The leg length, cushion thickness, fat thickness, conformation, colour, texture, muscle percent, and fat percent were similar between 16 and 22M bulls. The final and hot carcass weights were lower for bulls that were fed with 0.8% of BW. The carcass dressing was similar for the three concentrate levels. The average daily gain was higher for bulls that were fed with 1.6% of BW of concentrate and lower for those that were fed with 0.8%. The concentrate levels had no effect on carcass characteristics, feed intake, and dry matter conversion.

  16. Enumerating secondary structures and structural moieties for circular RNAs

    CERN Document Server

    Cuesta, José A

    2016-01-01

    A quantitative characterization of the relationship between molecular sequence and structure is essential to improve our understanding of how function emerges. This particular genotype-phenotype map has been often studied in the context of RNA sequences, with the folded configurations standing as a proxy for the phenotype. Here, we count the secondary structures of circular RNAs of length $n$ and calculate the asymptotic distributions of different structural moieties, such as stems or hairpin loops, by means of symbolic combinatorics. Circular RNAs differ in essential ways from their linear counterparts. From the mathematical viewpoint, the enumeration of the corresponding secondary structures demands the use of combinatorial techniques additional to those used for linear RNAs. The asymptotic number of secondary structures for circular RNAs grows as $a^nn^{-5/2}$, with a depending on particular constraints applied to the secondary structure. The abundance of any structural moiety is normally distributed in th...

  17. Stratification and enumeration of Boolean functions by canalizing depth

    Science.gov (United States)

    He, Qijun; Macauley, Matthew

    2016-01-01

    Boolean network models have gained popularity in computational systems biology over the last dozen years. Many of these networks use canalizing Boolean functions, which has led to increased interest in the study of these functions. The canalizing depth of a function describes how many canalizing variables can be recursively "picked off", until a non-canalizing function remains. In this paper, we show how every Boolean function has a unique algebraic form involving extended monomial layers and a well-defined core polynomial. This generalizes recent work on the algebraic structure of nested canalizing functions, and it yields a stratification of all Boolean functions by their canalizing depth. As a result, we obtain closed formulas for the number of n-variable Boolean functions with depth k, which simultaneously generalizes enumeration formulas for canalizing, and nested canalizing functions.

  18. Lattice enumeration for inverse molecular design using the signature descriptor.

    Science.gov (United States)

    Martin, Shawn

    2012-07-23

    We describe an inverse quantitative structure-activity relationship (QSAR) framework developed for the design of molecular structures with desired properties. This framework uses chemical fragments encoded with a molecular descriptor known as a signature. It solves a system of linear constrained Diophantine equations to reorganize the fragments into novel molecular structures. The method has been previously applied to problems in drug and materials design but has inherent computational limitations due to the necessity of solving the Diophantine constraints. We propose a new approach to overcome these limitations using the Fincke-Pohst algorithm for lattice enumeration. We benchmark the new approach against previous results on LFA-1/ICAM-1 inhibitory peptides, linear homopolymers, and hydrofluoroether foam blowing agents. Software implementing the new approach is available at www.cs.otago.ac.nz/homepages/smartin. PMID:22657105

  19. Stratification and enumeration of Boolean functions by canalizing depth

    CERN Document Server

    He, Qijun

    2015-01-01

    Boolean network models have gained popularity in computational systems biology over the last dozen years. Many of these networks use canalizing Boolean functions, which has led to increased interest in the study of these functions. The canalizing depth of a function describes how many canalizing variables can be recursively picked off, until a non-canalizing function remains. In this paper, we show how every Boolean function has a unique algebraic form involving extended monomial layers and a well-defined core polynomial. This generalizes recent work on the algebraic structure of nested canalizing functions, and it yields a stratification of all Boolean functions by their canalizing depth. As a result, we obtain closed formulas for the number of n-variable Boolean functions with depth k, which simultaneously generalizes enumeration formulas for canalizing, and nested canalizing functions.

  20. Ultrasound Imaging of Testes and Epididymides of Normal and Infertile Breeding Bulls

    Directory of Open Access Journals (Sweden)

    Khalid Mahmood Ali, Nazir Ahmad*, Nafees Akhtar, Shujait Ali, Maqbool Ahmad and Muhammad Younis1

    2011-10-01

    Full Text Available Echotexture of testes and epididymides from 10 slaughtered male buffaloes was studied. Diameter of testis and mediastinum testis was measured by ultrasound and compared with respective values taken by calipers. Testes and epididymides of another 10 fertile and 10 infertile breeding bulls were examined in vivo through manual palpation and ultrasound imaging. Semen quality of these bulls was also monitored. There were significant (P<0.01 positive correlations between ultrasound and calipers values of all parameters. The testicular parenchyma of fertile bulls was uniformly homogeneous and moderately echogenic. Epididymal tail was more heterogeneous and less echogenic, while epididymal head was homogeneous and less echogenic, than the testicular parenchyma. The epididymal body appeared as hypoechoic structure with echogenic margin. Among 10 infertile bulls, nine had poor semen quality, while one bull failed to give any ejaculate. On ultrasonography, six bulls showed abnormalities in their scrotal echotexture. Among these, one had an abundance of hyperechoic areas scattered in the testicular parenchyma, some of these showed acoustic shadowing, showing testicular degenerations with mineralization. The second bull showed many anechoic areas in the testes and epididymal head, demarcated from the rest of the organ by well defined margins. In the third bull, three-fourth of the right testis showed hyperechoic areas, suspected of testicular degeneration with mineralization. The fourth bull had two anechoic areas in one testis assumed to represent dilated blood vessel. The fifth bull showed small hyperechoic areas within the testicular parenchyma. The sixth bull showed an anechoic area with distinct hyperechogenic margin below the testicular tunics. The remaining four bulls had normal echogenicity of testes and epididymides in spite of poor semen quality. In conclusion, diagnostic ultrasound may be included in breeding soundness examination of breeding

  1. Factors influencing the spawning migration of female anadromous brown trout

    DEFF Research Database (Denmark)

    Svendsen, Jon Christian; Koed, Anders; Aarestrup, Kim

    2004-01-01

    Radio telemetry was employed to study movements of adult female anadromous brown trout Salmo trutta (sea trout) during upstream spawning migration and following spawning in a stream with tributaries. Sea trout were monitored by manual tracking and by automatic listening stations. The latter...

  2. Movement and mortality of stocked brown trout in a stream

    DEFF Research Database (Denmark)

    Aarestrup, Kim; Jepsen, Niels; Koed, Anders;

    2005-01-01

    The movement and mortality of stocked brown trout Salmo trutta were investigated using radio telemetry. Four brown trout left the study area whereas the remaining fish were stationary. After 5 weeks, 13 out of 50 tagged brown trout were still alive in the stream. Surviving fish had a significantly...

  3. Sensitivity of Trout to Chronic Acute Exposure to Selenium

    DEFF Research Database (Denmark)

    Nielsen, Gunnar Gissel; Nielsen, M. Gissel

    1978-01-01

    Trout were exposed to selenite (Na2SeO3) solutions of varying concentrations (0.1-100 ppm Se) for periods of up to 4 wk. A chronic exposure to 0.1 ppm Se or less is non-lethal to trout. Lethality at higher concentrations depends on the length of exposure. Trout that survive for 10 days in tap...

  4. Enumeration of microbial populations in radioactive environments by epifluorescence microscopy

    International Nuclear Information System (INIS)

    Epifluorescence microscopy was utilized to enumerate halophilic bacterial populations in two studies involving inoculated, actual waste/brine mixtures and pure brine solutions. The studies include an initial set of experiments designed to elucidate potential transformations of actinide-containing wastes under salt-repository conditions, including microbially mediated changes. The first study included periodic enumeration of bacterial populations of a mixed inoculum initially added to a collection of test containers. The contents of the test containers are the different types of actual radioactive waste that could potentially be stored in nuclear waste repositories in a salt environment. The transuranic waste was generated from materials used in actinide laboratory research. The results show that cell numbers decreased with time. Sorption of the bacteria to solid surfaces in the test system is discussed as a possible mechanism for the decrease in cell numbers. The second study was designed to determine radiological and/or chemical effects of 239Pu, 243Am, 237Np, 232Th and 238U on the growth of pure and mixed anaerobic, denitrifying bacterial cultures in brine media. Pu, Am, and Np isotopes at concentrations of ≤1x10-6 M , ≤5x10-6 M and ≤5x10-4M respectively, and Th and U isotopes ≤4x10-3M were tested in these media. The results indicate that high concentrations of certain actinides affected both the bacterial growth rate and morphology. However, relatively minor effects from Am were observed at all tested concentrations with the pure culture

  5. Analysis of High Reproductivity on Wild Yak Bull

    Institute of Scientific and Technical Information of China (English)

    陆仲璘

    2005-01-01

    Sperm concentration of wild yak bull is 2. 13 billion per milliliter. Survival time at 0-4 ℃ is 57hrs. After thawing survival time at 37 ℃ is 12 hrs. Resistance coefficient is 144,000. Abnormal sperm rate and acrosomal integrated rate of post-thawing is 9.17% and 87.53% respectively. Moving viscosity is 1. 169 cp. Total nitrogen is 1 437.7 mg/100 ml. Head of sperm is significantly shorter and end piece is significantly longer than that of domestic yak and yellow cattle. Activity of hyaluronidase is highly stronger than the domestic yak,and the activity of LDH is higher than the domestic yak by 48 %. Hence,the fertility of the wild yak bull is powerful and the artificial inseminated rate with domestic yak and yellow cattle is 88.9% and 71.58% respectively.

  6. Noise in the surrounding farms for fattening bulls.

    OpenAIRE

    KRAJÍČEK, Karel

    2011-01-01

    This Bachelor Thesis studies the Noise Pollution Issue in the surrounding of a Bull Farm. In Theoretical Part there are explained the basic noise concepts, its circumscription, sources, effects on Human health and basic prevention and antinoise protective agents. There is a brief introduction of the examined Farm and Livestock as well. In Practical Part there are indicated measurement procedures, their subsequent evaluation and assessment according to relevant standards and regulations.

  7. COMPARISON OF MEAT QUALITY IN BULLS AND COWS

    OpenAIRE

    Jozef Mojto; Kvetoslav Zaujec; Martina Gondeková

    2012-01-01

    Comparison of quality and sensorial evaluation of meat was performed in two categories of animals: cows (n=69) and bulls (n=52). We found highly significant differences between the categories in basic characteristics of animals. The greatest differences were found in age, weight of carcass, conformation, fatness and marbling of meat. Observation of meat quality in these categories showed approximately the same qualitative parameters in both categories. Significant results were noticed in the ...

  8. Snorkeling as an alternative to depletion electrofishing for assessing cutthroat trout and brown trout in stream pools

    Science.gov (United States)

    Joyce, M.P.; Hubert, W.A.

    2003-01-01

    We compared abundance and length structure estimates of cutthroat trout (Oncorhynchus clarki) and brown trout (Salmo trutta) of 15 cm total length or greater obtained by snorkeling in stream pools with estimates obtained by depletion electrofishing. We sampled 12 pools in each of two streams formed by large springs in the Salt River Valley of western Wyoming. Snorkeling counts provided a relatively accurate index of depletion electrofishing estimates of abundance of cutthroat trout, but not brown trout. Linear regression analysis showed that snorkeling counts were significantly related to depletion electrofishing estimates for both cutthroat trout (P brown trout (P = 0.002), but the coefficient of determination for brown trout (r2 = 0.33) was low compared to cutthroat trout (r2 = 0.95). Frequencies of fish in three length classes observed by snorkeling and depletion electrofishing were close to being significantly different for cutthroat trout (P = 0.066) and substantially different for brown trout (P = 0.005). Snorkeling frequently failed to observe fish in the shortest length class (15-29 cm total length) of both cutthroat trout and brown trout.

  9. Use of microsatellite markers for identification of indigenous brown trout in a geographical region heavily influenced by stocked domesticated trout

    DEFF Research Database (Denmark)

    Fritzner, Niels G.; Møller Hansen, Michael; Madsen, Steffen;

    2001-01-01

    Based on estimates of genetic differentiation between populations, assignment tests and analysis of isolation by distance, stocked populations of brown trout Salmo trutta of Funen Island, Denmark, had been genetically affected by domesticated trout, whereas the stocking of wild exogenous trout into...

  10. Diel resource partitioning among juvenile Atlantic Salmon, Brown Trout, and Rainbow Trout during summer

    Science.gov (United States)

    Johnson, James H.; McKenna Jr, James E.

    2015-01-01

    Interspecific partitioning of food and habitat resources has been widely studied in stream salmonids. Most studies have examined resource partitioning between two native species or between a native species and one that has been introduced. In this study we examine the diel feeding ecology and habitat use of three species of juvenile salmonids (i.e., Atlantic Salmon Salmo salar, Brown Trout Salmo trutta, and Rainbow Trout Oncorhynchus mykiss) in a tributary of Skaneateles Lake, New York. Subyearling Brown Trout and Rainbow Trout fed more heavily from the drift than the benthos, whereas subyearling Atlantic Salmon fed more from the benthos than either species of trout. Feeding activity of Atlantic Salmon and Rainbow Trout was similar, with both species increasing feeding at dusk, whereas Brown Trout had no discernable feeding peak or trough. Habitat availability was important in determining site-specific habitat use by juvenile salmonids. Habitat selection was greater during the day than at night. The intrastream, diel, intraspecific, and interspecific variation we observed in salmonid habitat use in Grout Brook illustrates the difficulty of acquiring habitat use information for widespread management applications.

  11. Brown trout and food web interactions in a Minnesota stream

    Science.gov (United States)

    Zimmerman, J.K.H.; Vondracek, B.

    2007-01-01

    1. We examined indirect, community-level interactions in a stream that contained non-native brown trout (Salmo trutta Linnaeus), native brook trout (Salvelinus fontinalis Mitchill) and native slimy sculpin (Cottus cognatus Richardson). Our objectives were to examine benthic invertebrate composition and prey selection of fishes (measured by total invertebrate dry mass, dry mass of individual invertebrate taxa and relative proportion of invertebrate taxa in the benthos and diet) among treatments (no fish, juvenile brook trout alone, juvenile brown trout alone, sculpin with brook trout and sculpin with brown trout). 2. We assigned treatments to 1 m2 enclosures/exclosures placed in riffles in Valley Creek, Minnesota, and conducted six experimental trials. We used three designs of fish densities (addition of trout to a constant number of sculpin with unequal numbers of trout and sculpin; addition of trout to a constant number of sculpin with equal numbers of trout and sculpin; and replacement of half the sculpin with an equal number of trout) to investigate the relative strength of interspecific versus intraspecific interactions. 3. Presence of fish (all three species, alone or in combined-species treatments) was not associated with changes in total dry mass of benthic invertebrates or shifts in relative abundance of benthic invertebrate taxa, regardless of fish density design. 4. Brook trout and sculpin diets did not change when each species was alone compared with treatments of both species together. Likewise, we did not find evidence for shifts in brown trout or sculpin diets when each species was alone or together. 5. We suggest that native brook trout and non-native brown trout fill similar niches in Valley Creek. We did not find evidence that either species had an effect on stream communities, potentially due to high invertebrate productivity in Valley Creek. ?? 2007 Blackwell Publishing Ltd.

  12. Growth and reproductive development from weaning through 20 months of age among breeds of bulls in subtropical Florida.

    Science.gov (United States)

    Chase, C C; Chenoweth, P J; Larsen, R E; Olson, T A; Hammond, A C; Menchaca, M A; Randel, R D

    1997-02-01

    To determine the effect of breed on growth and reproductive development, weaned bulls in each of 2 yr were managed as a single group for approximately a year. In Year 1, the study group consisted of 24 Angus, 24 Brahman, 20 Hereford and 14 Senepol bulls, while in Year 2, it contained 25 Angus, 17 Brahman. 13 Romosinuano and 9 Nellore x Brahman bulls. Body and testicular growth measurements were recorded at 6-wk intervals. At approximately 1 yr of age and quarterly thereafter (4 periods), bulls were evaluated for libido, pubertal status, and GnRH-induced LH and testosterone secretion. Significant breed-by-age interactions occurred for most growth measurements. Brahman bulls (Bos indicus ) were (P Angus, Hereford, Senepol and Romosinuano bulls (Bos taurus ). Libido scores were lowest for Brahman and Nell ore x Brahman bulls (Bos indicus ). highest for Angus and Hereford bulls (temperate Bos taurus breeds) and intermediate for Senepol and Romosinuano bulls (tropical Bos taurus breeds; P Angus and Hereford bulls (temperate breeds) than for Brahman, Senepol, Romosinuano and Nellore x Brahman bulls (tropical breeds). In conclusion, reproductive development of Senepol and Romosinuano bulls (tropical Bos taurus breeds) was more similar to Angus and Hereford bulls (temperate Bos taurus breeds) than to Brahman and Nellore x Brahman bulls (Bos indicus ). PMID:16728024

  13. The study of myocardial ischemic quality with weighted-subtraction-bull's-eye analysis

    International Nuclear Information System (INIS)

    Weighted-Subtraction-Bull's-eye analysis was studied in 33 normal subjects and 58 patients with coronary artery disease after dipyridamole 99mTc-MIBI myocardial SPECT imaging. Two kinds of Bull's-eye were produced: (1) subtract rest from 1.2 times dipyridamole from 1.2 times rest Bull's-eye; (2) subtract dipyridamole Bull's-eye. The results showed that the weighted-subtraction-Bull's-eye could clearly displayed the location and puality of ischemic myocardium. And also 74% segments showed so called combined ischemic i.e the blood perfusion reduced, increased and sustained simultaneously after dipyridamole. Therefore weighted-subtraction-Bull's-eye analysis had provided a new method for determination of the quality of ischemia

  14. FAT TISSUE DISTRIBUTION BETWEEN SUBCUTANEOUS AND INTERMUSCULAR FAT TISSUE IN SIMMENTAL AND BROWN BULLS

    OpenAIRE

    Silvester Žgur; Marko Čepon

    2007-01-01

    Simmental and Brown bulls from progeny testing station were used to evaluate the effect of breed on fat tissue partition between subcutaneous and intermuscular fat. Bulls (37 Brown and 34 Simmental breed) were slaughtered at the same degree of fatness. After slaughter carcasses were first cut into different carcass cuts and further on into lean meat, fat, bones and tendons. Fat was divided up into subcutaneous and intermuscular. Simmental bulls were heavier (average cold carcass side weight ...

  15. Joint disorder; a contributory cause to reproductive failure in beef bulls?

    Directory of Open Access Journals (Sweden)

    Ekman Stina

    2007-11-01

    Full Text Available Abstract The lame sire, unsound for breeding, can cause substantial economic loss due to reduced pregnancies in the beef-producing herd. To test the hypothesis that joint disorder is a possible cause of infertility in beef sires, right and left hind limb bones from 34 beef sires were examined postmortem to identify lesions in the femorotibial, femoropatellar (stifle, tarsocrural, talocalcaneus, and proximal intertarsal (tarsal joints. The bulls were slaughtered during or after the breeding season due to poor fertility results. Aliquots of the cauda epididymal contents taken postmortem from 26 bulls were used for sperm morphology evaluation. As a control, hind limbs (but no semen samples from 11 beef bulls with good fertility results were included. Almost all infertile bulls (30/34 had lesions in at least one joint. Twenty-eight bulls (28/30, 93% had lesions in the stifle joint, and 24 (24/28, 86% of these were bilateral. Fourteen bulls (14/30, 47% had lesions in the tarsal joint, and 10 (10/14, 71% of these were bilateral. Four bulls (4/34, 12% had no lesions, three bulls (3/34, 9% had mild osteoarthritis (OA, 5 (5/34, 15% moderate OA, 17 (17/34, 50% severe OA and 5 (5/34, 15% deformed OA. Almost all OA lesions (97% were characterized as lesions secondary to osteochondrosis dissecans. All the bulls with satisfactory sperm morphology (n = 12/34 had joint lesions, with mostly severe or deformed bilateral lesions (83%. Consequently, the most likely cause of infertility in these 12 bulls was joint disease. Almost all control bulls (10/11 had OA lesions, but most of them were graded as mild (55% or moderate (36%. None of the control bulls had severe lesions or deformed OA. We suggest that joint lesions should be taken into consideration as a contributory cause of reproductive failure in beef sires without symptoms of lameness.

  16. Fixation of femoral capital physeal fractures with 7.0 mm cannulated screws in five bulls

    International Nuclear Information System (INIS)

    Salter-Harris type I fractures of the femoral capital physis were repaired in five Holstein bulls with three 7.0 mm cannulated screws placed in lag fashion. Radiographically at months 7 to 10, the fractures were healed and there was periarticular bone production on the femoral necks and the dorsal acetabular rims. Four bulls had normal gaits, and one bull had muscle atrophy and barely detectable lameness

  17. Pracovní využití teriérů typu bull

    OpenAIRE

    TÖRÖKOVÁ, Jacquelina

    2013-01-01

    This work deals with the history of born, origin, domestication of the dog and various types of bull terriers. Pointing at the crossing of the Bulldog with a black terrier. This work also deals with the different types of dogs Bull, their character, description. This work answers the question, ?Why the pit bull is not dangerous to people", evaluates conflict situations, and shows how conflicts can occur. It mentions the current differences and cons of each breed. It places an attempt to creat...

  18. Immunity to VHS virus in rainbow trout

    DEFF Research Database (Denmark)

    Lorenzen, Niels; Olesen, Niels Jørgen; Koch, C.

    1999-01-01

    Viral hemorrhagic septicemia virus (VHSV) is the rhabdovirus that causes most disease problems in farmed rainbow trout in Europe. Survivors of infection are usually immune to reinfection but as with other fish viruses, development of a modern recombinant vaccine has been complicated by the limited...... knowledge of the immune mechanisms and antigens involved in induction of immunity. Neutralizing and protective monoclonal antibodies recognize the envelope glycoprotein (G protein) which is the only viral protein known to be present on the surface of the virus particle. Immunoblotting analyses with...... monoclonal antibodies as well as with sera from immunized trout have indicated that protein conformation plays an important role in neutralization epitopes. The virus neutralizing activity often found in sera from convalescent trout is highly dependent on a poorly defined complementing activity in normal...

  19. Effect of behaviour of Holstein Friesian and Simmental bulls on semen quality

    Directory of Open Access Journals (Sweden)

    Krzysztof Adamczyk

    2013-06-01

    Full Text Available The aim of the study was to determine the relationship between the behaviour of Holstein-Friesian and Simmental bulls and the quality of their semen. A total of 76 breeding bulls of the Holstein-Friesian and dual-purpose Simmental breeds were investigated. Analysis was made of the response of bulls to humans and other bulls, facial hair whorl position and length, scrotal circumference, and semen characteristics (mean ejaculate volume, mean sperm concentration, and sperm wave motion. The age and breed of the bulls had a statistically significant effect on semen quality, scrotal circumference and the animals response to an unfamiliar human (Plt,0.05, Plt,0.01. The coefficients of correlation between the bull s response to a handler and to other bulls averaged 0.73. In general, only weak correlations were found between behavioural traits of the bulls and quality of their semen. It is worth noting a good correlation (r=0.50; Plt;0.05 between hair whorl position and sperm concentration in Simmental bulls.

  20. Enhanced early-life nutrition promotes hormone production and reproductive development in Holstein bulls.

    Science.gov (United States)

    Dance, Alysha; Thundathil, Jacob; Wilde, Randy; Blondin, Patrick; Kastelic, John

    2015-02-01

    Holstein bull calves often reach artificial insemination centers in suboptimal body condition. Early-life nutrition is reported to increase reproductive performance in beef bulls. The objective was to determine whether early-life nutrition in Holstein bulls had effects similar to those reported in beef bulls. Twenty-six Holstein bull calves were randomly allocated into 3 groups at approximately 1 wk of age to receive a low-, medium-, or high-nutrition diet, based on levels of energy and protein, from 2 to 31 wk of age. Calves were on their respective diets until 31 wk of age, after which they were all fed a medium-nutrition diet. To evaluate secretion profiles and concentrations of blood hormones, a subset of bulls was subjected to intensive blood sampling every 4 wk from 11 to 31 wk of age. Testes of all bulls were measured once a month; once scrotal circumference reached 26cm, semen collection was attempted (by electroejaculation) every 2 wk to confirm puberty. Bulls were maintained until approximately 72 wk of age and then slaughtered at a local abattoir. Testes were recovered and weighed. Bulls fed the high-nutrition diet were younger at puberty (high=324.3 d, low=369.3 d) and had larger testes for the entire experimental period than bulls fed the low-nutrition diet. Bulls fed the high-nutrition diet also had an earlier and more substantial early rise in LH than those fed the low-nutrition diet and had increased concentrations of insulin-like growth factor-I (IGF-I) earlier than the bulls fed the low-nutrition diet. Furthermore, we detected a temporal association between increased IGF-I concentrations and an early LH rise in bulls fed the high-nutrition diet. Therefore, we inferred that IGF-I had a role in regulating the early gonadotropin rise (in particular, LH) and thus reproductive development of Holstein bulls. Overall, these results support our hypothesis that Holstein bull calves fed a high-nutrition diet reach puberty earlier and have larger testes than

  1. Effects of herd origin, AI stud and sire identification on genetic evaluation of Holstein Friesian bulls

    OpenAIRE

    Giovanni Bittante; Paolo Carnier; Luigi Gallo Gallo; Riccardo Dal Zotto; Martino Cassandro

    2010-01-01

    The purpose of this study was to estimate the effects of herd origin of bull, AI stud and sire identification number (ID)  on official estimated breeding values (EBV) for production traits of Holstein Friesian proven bulls. The data included 1,005  Italian Holstein-Friesian bulls, sons of 76 sires, born in 100 herds and progeny tested by 10 AI studs. Bulls were required  to have date of first proof between September 1992 and September 1997, to be born in a herd with at least on...

  2. THE PERFORMANCE OF JAVA AND ONGOLE CROSSBRED BULL UNDER INTENSIVE FEEDING MANAGEMENT

    OpenAIRE

    C.M.S. Lestari; R. Adiwinarti; M Arifin; A. Purnomoadi

    2011-01-01

    This study was set up to evaluate the performance of Java and Ongole Crossbred (OC) bulls fed concentrate and rice straw. A total of four Java bulls and four OC bulls were used in this experiment. The bulls were fed concentrates (50% of the total dry matter feed requirement) and rice straw (ad libitum). The concentrates were consisted of rice bran, beer waste product, copra meal, minerals, with crude protein (CP) and total digestible nutrients (TDN) contents of 15.32% and 73.09%, respectively...

  3. THE PERFORMANCE OF JAVA AND ONGOLE CROSSBRED BULL UNDER INTENSIVE FEEDING MANAGEMENT

    Directory of Open Access Journals (Sweden)

    C.M.S. Lestari

    2014-10-01

    Full Text Available This study was set up to evaluate the performance of Java and Ongole Crossbred (OC bulls fedconcentrate and rice straw. A total of four Java bulls and four OC bulls were used in this experiment. Thebulls were fed concentrates (50% of the total dry matter feed requirement and rice straw (ad libitum.The concentrates were consisted of rice bran, beer waste product, copra meal, minerals, with crudeprotein (CP and total digestible nutrients (TDN contents of 15.32% and 73.09%, respectively. Theaverage daily gain (ADG, dry matter intake (DMI, protein and energy intake, and feed conversion ratio(FCR were observed. The results of this study showed that the ADG, DMI, CP and TDN intake, andFCR were not significantly different (p> 0.05. The ADG of Java and OC bulls were 0.58 kg and 0.78kg, respectively. The averages of DMI, CP and TDN intake were 6.59 kg (2.09% of BW, 0.81 kg and4.34 kg for Java bulls whereas for OC bulls were 6.42 kg (2.11% of BW, 0.78 kg, and 4.20 kg,respectively. The FCR of Java bulls was 11.49 and those of OC bulls was 9.21. It can be concluded thatJava and OC bulls raised intensively and fed concentrate and rice straw had the similar performance.

  4. Concentrate levels of crossbred bulls slaughtered at 16 or 22 months: performance and carcass characteristics

    OpenAIRE

    Adriana Pinto; Rodrigo Augusto Cortêz Passetti; Ana Guerrero; Dayane Cristina Rivaroli; Daniel Perotto; Ivanor Nunes do Prado

    2015-01-01

    This study was performed to assess the animal performance of 97 bulls, ½ Purunã vs. ½ Canchim, that were slaughtered at 16 (16M) or 22 (22M) months with three concentrate levels (0.8, 1.2, and 1.6%) of body weight (BW). The initial body weight was lower for the 16M bulls. The final body weight and hot carcass weights were similar between the two slaughter ages. The hot carcass dressing was higher for 22M bulls. The average daily gain was higher for 16M bulls. The feed intake and dry matter fe...

  5. Use of microsatellite markers for identification of indigenous brown trout in a geographical region heavily influenced by stocked domesticated trout

    DEFF Research Database (Denmark)

    Fritzner, N.G.; Hansen, Michael Møller; Madsen, S.S.;

    2001-01-01

    Based on estimates of genetic differentiation between populations, assignment tests and analysis of isolation by distance, stocked populations of brown trout Salmo trutta of Funen Island, Denmark, had been genetically affected by domesticated trout, whereas the stocking of wild exogenous trout into...... one of the rivers had little or no impact. At the same time, there were clear indications of remaining indigenous gene pools in the Funen populations. The management implications of these findings are discussed and changes in trout release activity are recommended to avoid further mixing of trout gene...

  6. Microsatellite analyses of the trout of northwest Mexico

    Science.gov (United States)

    Nielsen, J.L.; Sage, G.K.

    2001-01-01

    The trout of northwest Mexico represent an undescribed group of fish considered part of the Oncorhynchus mykiss (Pacific trout) complex of species and subspecies. Recent genetic studies have shown these fish to have important genetic diversity and a unique evolutionary history when compared to coastal rainbow trout. Increased levels of allelic diversity have been found in this species at the southern extent of its range. In this study we describe the trout in the Sierra Madre Occidental from the rios Yaqui, Mayo, Casas Grandes and de Bavispe, and their relationship to the more southern distribution of Mexican golden trout (O. chrysogaster) using 11 microsatellite loci. Microsatellite allelic diversity in Mexican trout was high with a mean of 6.6 alleles/locus, average heterozygosity = 0.35, and a mean Fst = 0.43 for all loci combined. Microsatellite data were congruent with previously published mtDNA results showing unique panmictic population structure in the Rio Yaqui trout that differs from Pacific coastal trout and Mexican golden trout. These data also add support for the theory of headwaters transfer of trout across the Continental Divide from tributaries of the Rio de Bavispe into the Rio Casas Grandes. Rio Mayo trout share a close genetic relationship to trout in Rio Yaqui, but sample sizes from the Rio Mayo prevent significant comparisons in this study. Microsatellite analyses show significant allelic frequency differences between Rio Yaqui trout and O. chrysogaster in Sinaloa and Durango Mexico, adding further support for a unique evolutionary status for this group of northwestern Mexican trout.

  7. Laboratory evaluation of a lake trout bioenergetics model

    Science.gov (United States)

    Madenjian, Charles P.; O'Connor, Daniel V.

    1999-01-01

    Lake trout Salvelinus namaycush, aged 3 and 6 years and with average weights of 700 and 2,000 g, were grown in laboratory tanks for up to 407 d under a thermal regime similar to that experienced by lake trout in nearshore Lake Michigan. Lake trout were fed alewifeAlosa pseudoharengus and rainbow smelt Osmerus mordax, prey typical of lake trout in Lake Michigan. Of the 120 lake trout used in the experiment, 40 were fed a low ration (0.25% of their body weight per day), 40 were fed a medium ration (0.5% of their body weight per day), and 40 were fed a high ration (ad libitum). We measured consumption and growth, and we compared observed consumption with that predicted by the Wisconsin bioenergetics model. For lake trout fed the medium ration, model predictions for monthly consumption were unbiased. Moreover, predicted cumulative consumption by medium-ration lake trout for the entire experiment (320 d for smaller lake trout and 407 d for larger lake trout) agreed quite well with observed cumulative consumption; predictions were as close as within 0.1 to 5.2% of observed cumulative consumption. Even so, the model consistently overestimated consumption by low-ration fish and underestimated consumption by high-ration fish. The bias was significant in both cases, but was more severe for the low-ration trout. Because the low-ration and high-ration regimes were probably unrealistic for lake trout residing in Lake Michigan and because the model fit our laboratory data rather well for medium-ration trout, we conclude that applying the Wisconsin bioenergetics model to the Lake Michigan lake trout population in order to estimate the amount of prey fish consumed by lake trout each year is appropriate.

  8. Do native brown trout and non-native brook trout interact reproductively?

    OpenAIRE

    Cucherousset, Julien; Aymes, J.-C.; Poulet, Nicolas; Santoul, Frédéric; Céréghino, Régis

    2008-01-01

    International audience Reproductive interactions between native and non-native species of fish have received little attention compared to other types of interactions such as predation or competition for food and habitat. We studied the reproductive interactions between non-native brook trout (Salvelinus fontinalis) and native brown trout (Salmo trutta) in a Pyrenees Mountain stream (SW France). We found evidence of significant interspecific interactions owing to consistent spatial and temp...

  9. Influence of Genotype and Diet on the Characteristics of Semitendinosus Muscle in Crossbred Young Bulls Derived from Brown Swiss Cow and Double Muscled Bulls

    OpenAIRE

    Giovanni Bittante; Rina Verdiglione

    2013-01-01

    The aim of this study was to evaluate the influence of genotype and diet on the characteristics of muscle fibers and adipocytes of the semitendinosus muscle in crossbred young bulls derived from Brown Swiss cows (B) and double-muscled Piemontese (PI) or Belgian Blue (BB) bulls. For this purpose 24 young bulls divided in 6 groups fed 3 diets have been used: a control diet without supplementation of rumen protected CLA (rpCLA), two other diets added with 8 or 80 g/d of a supplement of rpCLA. Th...

  10. Sensing and enumerating rare circulating cells with diffuse light

    Science.gov (United States)

    Zettergren, Eric; Vickers, Dwayne; Niedre, Mark

    2011-02-01

    Detection and quantification of circulating cells in live animals is a challenging and important problem in many areas of biomedical research. Current methods involve extraction of blood samples and counting of cells ex-vivo. Since only small blood volumes are analyzed at specific time points, monitoring of changes in cell populations over time is difficult and rare cells often escape detection. The goal of this research is to develop a method for enumerating very rare circulating cells in the bloodstream non-invasively. This would have many applications in biomedical research, including monitoring of cancer metastasis and tracking of hematopoietic stem cells. In this work we describe the optical configuration of our instrument which allows fluorescence detection of single cells in diffusive media at the mesoscopic scale. Our instrument design consists of two continuous wave laser diode sources and an 8-channel fiber coupled multi-anode photon counting PMT. Fluorescence detector fibers were arranged circularly around the target in a miniaturized ring configuration. Cell-simulating fluorescent microspheres and fluorescently-labeled cells were passed through a limb mimicking phantom with similar optical properties and background fluorescence as a limb of a mouse. Our data shows that we are able to successfully detect and count these with high quantitative accuracy. Future work includes characterization of our instrument using fluorescently labeled cells in-vivo. If successful, this technique would allow several orders of magnitude in vivo detection sensitivity improvement versus current approaches.

  11. Using pattern enumeration to accelerate process development and ramp yield

    Science.gov (United States)

    Zhuang, Linda; Pang, Jenny; Xu, Jessy; Tsai, Mengfeng; Wang, Amy; Zhang, Yifan; Sweis, Jason; Lai, Ya-Chieh; Ding, Hua

    2016-03-01

    During a new technology node process setup phase, foundries do not initially have enough product chip designs to conduct exhaustive process development. Different operational teams use manually designed simple test keys to set up their process flows and recipes. When the very first version of the design rule manual (DRM) is ready, foundries enter the process development phase where new experiment design data is manually created based on these design rules. However, these IP/test keys contain very uniform or simple design structures. This kind of design normally does not contain critical design structures or process unfriendly design patterns that pass design rule checks but are found to be less manufacturable. It is desired to have a method to generate exhaustive test patterns allowed by design rules at development stage to verify the gap of design rule and process. This paper presents a novel method of how to generate test key patterns which contain known problematic patterns as well as any constructs which designers could possibly draw based on current design rules. The enumerated test key patterns will contain the most critical design structures which are allowed by any particular design rule. A layout profiling method is used to do design chip analysis in order to find potential weak points on new incoming products so fab can take preemptive action to avoid yield loss. It can be achieved by comparing different products and leveraging the knowledge learned from previous manufactured chips to find possible yield detractors.

  12. Simple method for correct enumeration of Staphylococcus aureus.

    Science.gov (United States)

    Haaber, J; Cohn, M T; Petersen, A; Ingmer, H

    2016-06-01

    Optical density (OD) measurement is applied universally to estimate cell numbers of microorganisms growing in liquid cultures. It is a fast and reliable method but is based on the assumption that the bacteria grow as single cells of equal size and that the cells are dispersed evenly in the liquid culture. When grown in such liquid cultures, the human pathogen Staphylococcus aureus is characterized by its aggregation of single cells into clusters of variable size. Here, we show that aggregation during growth in the laboratory standard medium tryptic soy broth (TSB) is common among clinical and laboratory S. aureus isolates and that aggregation may introduce significant bias when applying standard enumeration methods on S. aureus growing in laboratory batch cultures. We provide a simple and efficient sonication procedure, which can be applied prior to optical density measurements to give an accurate estimate of cellular numbers in liquid cultures of S. aureus regardless of the aggregation level of the given strain. We further show that the sonication procedure is applicable for accurate determination of cell numbers using agar plate counting of aggregating strains. PMID:27080188

  13. Enumeration of Golomb Rulers and Acyclic Orientations of Mixed Graphs

    CERN Document Server

    Beck, Matthias; Pham, Tu

    2011-01-01

    A \\emph{Golomb ruler} is a sequence of distinct integers (the \\emph{markings} of the ruler) whose pairwise differences are distinct. Golomb rulers can be traced back to additive number theory in the 1930s and have attracted recent research activities on existence problems, such as the search for \\emph{optimal} Golomb rulers (those of minimal length given a fixed number of markings). Our goal is to enumerate Golomb rulers in a systematic way: we study [g_m(t) := # {\\x \\in \\Z^{m+1} : \\, 0 = x_0 < x_1 < ... < x_{m-1} < x_m = t, \\text{all} x_j - x_k \\text{distinct}},] the number of Golomb rulers with $m+1$ markings and length $t$. Our main result is that $g_m(t)$ is a quasipolynomial in $t$ which satisfies a combinatorial reciprocity theorem: $(-1)^{m-1} g_m(-t)$ equals the number of rulers $\\x$ of length $t$ with $m+1$ markings, each counted with its \\emph{Golomb multiplicity}, which measures how many combinatorially different Golomb rulers are in a small neighborhood of $\\x$. Our reciprocity theorem...

  14. SEMEN PRODUCTION AND PRODUCTIVE LIFE OF SAHIWAL BULLS: RELATIONSHIP WITH GENETIC WORTH

    Directory of Open Access Journals (Sweden)

    M. S. KHAN, A. A. BHATTI, S. A. BHATTI1 AND M. ASHIQ2

    2007-01-01

    Full Text Available Objective of the present study was to document the semen producing ability, productive life and genetic ability for lactation milk yield of Sahiwal bulls used for artificial insemination (AI in Punjab and to find the impact of AI bulls on the improvement of Sahiwal cattle. Data from Semen Production Unit (SPU, Qadirabad, Sahiwal, Pakistan were used for this purpose. A repeatability animal model was used for estimation of breeding values for lactation milk yield. Productive life of a bull was calculated as a difference between culling age and the age at first ejaculation. Number of bulls brought to SPU varied from 9 to 102 for any year. Average number of doses of semen produced by any bull for a year varied from 724 to 5745. On the average, 238 bulls produced 17143 ± 1164 semen doses during their average stay of 5.4 ± 0.2 years. About 50% of the bulls stayed for less than four years at the SPU; with a maximum range of 14 years. Progeny tested bulls (n=90 produced 5000 and 10000 semen doses (Y in three and four years of stay (X, respectively (Y = 24.8 + 2.3635 X - 0.0112 X2. To produce 20,000 doses, it is predicted that bulls need to stay for six and a half years at the SPU. There was no association between breeding values for lactation milk yield estimated under a repeatability animal model (EBVs and number of semen doses produced (r = 0.17 and EBVs and number of daughters. Lack of genetic superiority of bulls used indicated that AI did not bring desired genetic improvement in Sahiwal cattle in the present situation. Modifications for judicious utilization of bulls are suggested along with improvements in data recording.

  15. 75 FR 38768 - Ashley National Forest, UT, High Uintas Wilderness-Colorado River Cutthroat Trout Habitat...

    Science.gov (United States)

    2010-07-06

    ... Forest Service Ashley National Forest, UT, High Uintas Wilderness--Colorado River Cutthroat Trout Habitat...) proposes to restore genetically pure Colorado River cutthroat trout (CRCT; Onchorhynchus clarki pleuriticus... District. Nonnative fish species to be removed are primarily brook trout (Salvelinus...

  16. AEROMONAS SALMONICIDA INFECTION IN VACCINATED RAINBOW TROUT

    DEFF Research Database (Denmark)

    Chettri, Jiwan Kumar; Skov, Jakob; Mohammad, Rezkar Jaafar;

    causing furunculosis. Rainbow trout (Oncorhynchus mykiss) were vaccinated with two trivalent adjuvanted experimental vaccines containing formalin-killed A. salmonicida, Vibrio anguillarum O1 and O2a and a commercial corresponding vaccine (Alpha Ject 3000). Fish were challenged by i.p. injection or...

  17. "Buzz marketing" : estudo de caso da marca Red Bull

    OpenAIRE

    Conceição, Miguel David

    2012-01-01

    Este relatório é baseado no estágio efetuado na agência de publicidade Ogilvy & Mather e é dedicado à temática do Buzz Marketing. De modo a poder explorar a fundo as dinâmicas deste tema foi feita uma análise à estratégia de marketing da marca Red Bull, considerada como um dos principais estudos de caso no âmbito do Buzz Marketing. Este tema pode ser definido como uma estratégia de marketing inovadora cujo objetivo principal é a criação de conversas entre os consumidores, colocando-os a falar...

  18. The complete mitochondrial DNA of the bull shark (Carcharhinus leucas).

    Science.gov (United States)

    Diaz-Jaimes, Pindaro; Uribe-Alcocer, Manuel; Hinojosa-Alvarez, Silvia; Sandoval-Laurrabaquio, Nadia; Adams, Douglas H; García De León, Francisco J

    2016-01-01

    The bull shark mitochondrial structure is similar to that of other elasmobranchs; it has a total length of 16,100 bp, the base composition of the genomes was as follows: A (31.35%), T (31.35%), C (24.38%) and G (12.90%). It contains 13 protein-coding genes and 23 tRNA genes. The tRNA genes range from 70-72 bp. Gene order is the same as in other vertebrates and teleosts. PMID:24810063

  19. Use of NMR and NMR Prediction Software to Identify Components in Red Bull Energy Drinks

    Science.gov (United States)

    Simpson, Andre J.; Shirzadi, Azadeh; Burrow, Timothy E.; Dicks, Andrew P.; Lefebvre, Brent; Corrin, Tricia

    2009-01-01

    A laboratory experiment designed as part of an upper-level undergraduate analytical chemistry course is described. Students investigate two popular soft drinks (Red Bull Energy Drink and sugar-free Red Bull Energy Drink) by NMR spectroscopy. With assistance of modern NMR prediction software they identify and quantify major components in each…

  20. Duration Dependence in Stock Prices: An Analysis of Bull and Bear Markets

    DEFF Research Database (Denmark)

    Lunde, Asger; Timmermann, Allan

    2004-01-01

    This article studies time series dependence in the direction of stock prices by modeling the (instantaneous) probability that a bull or bear market terminates as a function of its age and a set of underlying state variables, such as interest rates. A random walk model is rejected both for bull an...

  1. Does bovine besnoitiosis affect the sexual function of chronically infected bulls?

    Science.gov (United States)

    Esteban-Gil, A; Jacquiet, P; Florentin, S; Decaudin, A; Berthelot, X; Ronsin, P; Grisez, C; Prevot, F; Alzieu, J P; Marois, M; Corboz, N; Peglion, M; Vilardell, C; Liénard, E; Bouhsira, E; Castillo, J A; Franc, M; Picard-Hagen, N

    2016-09-15

    Bovine besnoitiosis is a reemerging disease in Europe. The clinically Besnoitia besnoiti infection in bulls is characterized by fever, nasal discharge, and orchitis in the acute phase and by scleroderma in the chronic phase. However, in many bulls, B besnoiti infection remains at a subclinical stage. Bull infertility is an economically relevant consequence of besnoitiosis infection. It is not clear, however, if semen quality returns to normal levels when infected animals have clinically recovered. The aim of this study was to examine the relationship between chronic besnoitiosis and bull sexual function in a region of eastern France, where the disease is reemerging, by comparing semen quality and genital lesions in 11 uninfected, 17 subclinically infected, and 12 clinically infected bulls. The presence of anti-B besnoiti antibodies was detected by Western blot test. Semen was collected by electroejaculation. Bulls clinically infected with B besnoiti showed significantly more genital tract alterations than uninfected or subclinically infected bulls. No relationship was evidenced between besnoitiosis infectious status and semen quality, whereas a significant relationship was noted between genital lesions and semen score. This means that in the absence of moderate to severe genital lesions, chronic bovine besnoitiosis is unlikely to alter semen quality. However, as the presence of infected animals could lead to spread of the disease, culling or separation of clinically infected bulls from the remaining healthy animals is strongly recommended. PMID:27264738

  2. Enumeration and phylogenetic analysis of polycyclic aromatic hydrocarbon-degrading marine bacteria from Puget sound sediments.

    OpenAIRE

    Geiselbrecht, A D; Herwig, R P; Deming, J. W.; Staley, J T

    1996-01-01

    Naphthalene- and phenanthrene-degrading bacteria in Puget Sound sediments were enumerated by most-probable-number enumeration procedures. Sediments from a creosote-contaminated Environmental Protection Agency Superfund Site (Eagle Harbor) contained from 10(4) to 10(7) polycyclic aromatic hydrocarbon (PAH)-degrading bacteria g (dry weight) of sediment-1, whereas the concentration at an uncontaminated site ranged from 10(3) to 10(4) g of sediment(-1). Isolates of PAH-degrading bacteria were obt...

  3. Microparticles as biomarkers of lung disease: enumeration in biological fluids using lipid bilayer microspheres.

    Science.gov (United States)

    McVey, Mark J; Spring, Christopher M; Semple, John W; Maishan, Mazharul; Kuebler, Wolfgang M

    2016-05-01

    Extracellular vesicles, specifically microparticles (MPs), are rapidly gaining attention for their capacity to act as biomarkers for diagnosis, prognosis, or responsiveness to therapy in lung disease, in keeping with the concept of precision medicine. However, MP analysis by high-sensitivity flow cytometry (FCM) is complicated by a lack of accurate means for MP enumeration. To address this gap, we report here an enhanced FCM MP gating and enumeration technique based on the use of novel engineered lipid bilayer microspheres (LBMs). By comparison of LBM-based MP enumeration with conventional bead- or fluorescent-based FCM enumeration techniques and a gravimetric consumption gold standard, we found LBMs to be superior to commercial bead preparations, showing the smallest fixed bias and limits of agreement in Bland Altman analyses. LBMs had simultaneous capacity to aid FCM enumeration of MPs in plasma, BAL, and cell culture supernatants. LBM enumeration detected differences in MP counts in mice exposed to intraperitoneal lipopolysaccharide or saline. LBMs provided for 1) higher sensitivity for gating MPs populations, 2) reduced background within MP gates, 3) more appropriate size, and 4) an inexpensive alternative amenable to different fluorescent tags. LBM-based MP enumeration was useful for a series of different FCM systems assessed, whereas LBM gating benefited high- but not low-sensitivity FCM systems compared with fluorescence gating. By offering exclusive advantages over current means of gating and enumerating MPs, LBMs are uniquely suited to realizing the potential of MPs as biomarkers in biological lung fluids and facilitating precision medicine in lung disease. PMID:26944090

  4. Statistical Analysis of the Performance of MDL Enumeration for Multiple-Missed Detection in Array Processing

    OpenAIRE

    Fei Du; Yibo Li; Shijiu Jin

    2015-01-01

    An accurate performance analysis on the MDL criterion for source enumeration in array processing is presented in this paper. The enumeration results of MDL can be predicted precisely by the proposed procedure via the statistical analysis of the sample eigenvalues, whose distributive properties are investigated with the consideration of their interactions. A novel approach is also developed for the performance evaluation when the source number is underestimated by a number greater than one, wh...

  5. THE MATRIX ITERATION ALGORITHM SOLVING AN ENUMERATION PROBLEM ON BACTERIAL COMPLETE GENOMES

    Institute of Scientific and Technical Information of China (English)

    YANG Huakang; HUANG Chengxiang; WEN Xiaowei

    2004-01-01

    Given an alphabet ∑ and a finite minimal set B of forbidden words, a combinatorial enumeration problem on bacterial complete genomes is transformed to enumerating strings of a given length which do not contain any string in B as their substrings. From the fact that a string in the language is equivalent to a path in the corresponding graph,we have obtained a polynomial time algorithm by modifying the power of the adjacency matrix in the graph.

  6. Enumeration and Biomass Estimation of Bacteria in Aquifer Microcosm Studies by Flow Cytometry

    OpenAIRE

    DeLeo, P. C.; Baveye, P

    1996-01-01

    Flow cytometry was used to enumerate and characterize bacteria from a sand column microcosm simulating aquifer conditions. Pure cultures of a species of Bacillus isolated from subsurface sediments or Bacillus megaterium were first evaluated to identify these organisms' characteristic histograms. Counting was then carried out with samples from the aquifer microcosms. Enumeration by flow cytometry was compared with more-traditional acridine orange direct counting. These two techniques gave stat...

  7. Enumeration of self avoiding trails on a square lattice using a transfer matrix technique

    CERN Document Server

    Conway, A R

    1993-01-01

    We describe a new algebraic technique, utilising transfer matrices, for enumerating self-avoiding lattice trails on the square lattice. We have enumerated trails to 31 steps, and find increased evidence that trails are in the self-avoiding walk universality class. Assuming that trails behave like $A \\lambda ^n n^{11 \\over 32}$, we find $\\lambda = 2.72062 \\pm 0.000006$ and $A = 1.272 \\pm 0.002$.

  8. Exact enumeration of conformations for two and three dimensional lattice proteins

    Science.gov (United States)

    Silpaja Chandrasekar, K.; Sangaranarayanan, M. V.

    2016-02-01

    We report an efficient methodology for exactly enumerating conformations of lattice proteins, taking into account the self-avoiding nature. These self-avoiding walks in square and simple cubic lattices take into account, the detailed paths by which a destination site can be reached from a starting site. The strategy employing JAVA programming enables the exact enumeration for very large lattice sizes. The estimation of these conformations is helpful in designing the protein sequences pertaining to Hydrophobic-Polar models.

  9. Linear Programming Bounds for Entanglement-Assisted Quantum Error-Correcting Codes by Split Weight Enumerators

    OpenAIRE

    Lai, Ching-Yi; Ashikhmin, Alexei

    2016-01-01

    Linear programming approaches have been applied to derive upper bounds on the size of classical codes and quantum codes. In this paper, we derive similar results for general quantum codes with entanglement assistance, including nonadditive codes, by considering a type of split weight enumerators. After deriving the MacWilliams identities for these split weight enumerators, we are able to prove algebraic linear programming bounds, such as the Singleton bound, the Hamming bound, and the first l...

  10. Enumeration of Klebsiella spp. in cold water by using MacConkey-inositol-potassium tellurite medium.

    OpenAIRE

    Dutka, B J; Jones, K; Bailey, H.

    1987-01-01

    MacConkey-inositol-potassium tellurite agar was field tested for its ability to selectively enumerate Klebsiella species from the waters of the Saint John River Basin, which include fresh and marine waters. Water temperature varied from 1 to 6 degrees C during the survey period. Results of the study indicated that 77% of the typical colonies on MacConkey-inositol-potassium tellurite medium were Klebsiella species, but the total Klebsiella population enumerated was greatly underestimated.

  11. Method to enumerate oocysts of cryptosporidium and cysts of Giardia in water

    International Nuclear Information System (INIS)

    Cryptosporidium and Giardia have been recognized as etiological agents of gastrointestinal illness in humans with severe consequences on children and immunocompromised individuals. Water seems to be vehicle of infection. In last years many efforts have been done to evaluate a method to enumerate oocysts of Cryptosporidium and cysts of Giardia in waters. Throughout filtration and concentration steps, the two procedures proposed allow to enumerate oocysts and cysts belonging to the two genera of protozoa

  12. Growth, puberty, and carcass characteristics of Brahman-, Senepol-, and Tuli-sired F1 Angus bulls.

    Science.gov (United States)

    Chase, C C; Chenoweth, P J; Larsen, R E; Hammond, A C; Olson, T A; West, R L; Johnson, D D

    2001-08-01

    Postweaning growth, sexual development, libido, and carcass data were collected from two consecutive calf crops using 31 Brahman x Angus (B x A), 41 Senepol x Angus (S x A), and 38 Tuli x Angus (T x A) F1 bulls. Following weaning (by mid-September) and preconditioning, at the start of the study (late September) bulls were fed concentrate (three times each week at a rate equivalent to 4.5 kg/d) on bahiagrass pasture for approximately 250 d. At the start of the study and at 28-d intervals, BW, hip height, and scrotal circumference (SC) were measured. Concurrently at 28-d intervals, when the SC of a bull was > or = 23 cm, semen collection was attempted using electroejaculation. Ejaculates were evaluated for presence of first spermatozoa (FS), 50 x 10(6) sperm with at least 10% motility (PU), and 500 x 10(6) sperm with at least 50% motility (PP). After all bulls reached PP they were subjected to two libido tests. Carcass data were collected on all bulls (n = 110) and Warner-Bratzler shear (WBS) force values were assessed on a subset (n = 80). For both years, B x A bulls were heavier (P 0.10) gain in BW or hip height during the study. Scrotal circumference of T x A bulls was larger (P 0.10) of breed type by the end of the study. At PU and PP, B x A bulls were older (P yield grade than T x A bulls but greatest (P 0.10) USDA quality grade. In conclusion, tropically adapted F1 bulls produced from Senepol (Bos taurus) and Tuli (Sanga) sires bred to Angus cows in Florida had lighter BW, shorter hip heights, and smaller carcasses than those from Brahman sires but reached puberty earlier and had higher libido scores and lower WBS force values. PMID:11518209

  13. DENMARK – EUROPEAN CHAMPION IN ORGANIC RAINBOW TROUT

    OpenAIRE

    Larsen, Erling P.; Nielsen, Max; Larsen, Villy J.; Jokumsen, Alfred

    2016-01-01

    In 2014 Denmark was the biggest producer of organic rainbow trout in Europe with a total amount of 1,080 tons. The producers of the organic trout had a better economic earning than the conventional producers, measured per unit produced. The value wason average 8 % higher per unit than for the conventional producers. The solvency ratio was in 2012 an average of 28 %, which was higher than the traditional trout producers’ solvency ratio (solvency ratio measure an enterprises ability to meet its...

  14. TROUT STEAKS: CONSUMER PERCEPTIONS OF A NEW FOOD ITEM

    OpenAIRE

    Dasgupta, Siddhartha; Foltz, John C.; Jacobsen, Bonnie

    2000-01-01

    Water quality standards and a limited water supply have dramatically restricted the expansion of the U.S. trout industry. Faced with production restrictions, producers have turned to value-added products to strengthen the economic growth of the industry. In the near future, trout steaks could surface in retail outlets as a new revenue source for the mature trout industry. A telephone survey of consumers in Chicago and Los Angeles was conducted by the University of Idaho in the spring of 1997 ...

  15. CONSUMER PERCEPTIONS OF TROUT AS A FOOD ITEM

    OpenAIRE

    Foltz, John C.; Dasgupta, Siddhartha; Devadoss, Stephen

    1999-01-01

    The impacts of socioeconomic/demographic characteristics, experiences and preferences of consumers on trout purchasing decisions were estimated using Probit and Ordered Probit regression techniques. Data from a survey of consumer purchasing behavior and personal attributes were used to deduce factors that led to either a high or low likelihood of purchasing trout products. Analysis of data pertaining to whole trout and value-added products yielded consistently different characteristics of con...

  16. The economic value of trout fishery management programs

    International Nuclear Information System (INIS)

    The contingent valuation method is used to estimate the economic value of a trout fishing day at the Cache la Poudre River in Colorado. In addition, changes in daily economic value and yearly participation are estimated for changes in the quality of fishing such as: (1) change in catch or size of catch; (2) wild trout fishing versus hatchery trout fishing; (3) change in catch or size under catch and release management. Anglers are grouped by a distinguishing characteristic, skill level, and the economic value of trout fishing and changes in the quality of fishing are compared at different skill levels

  17. Effects of herd origin, AI stud and sire identification on genetic evaluation of Holstein Friesian bulls

    Directory of Open Access Journals (Sweden)

    Giovanni Bittante

    2010-01-01

    Full Text Available The purpose of this study was to estimate the effects of herd origin of bull, AI stud and sire identification number (ID  on official estimated breeding values (EBV for production traits of Holstein Friesian proven bulls. The data included 1,005  Italian Holstein-Friesian bulls, sons of 76 sires, born in 100 herds and progeny tested by 10 AI studs. Bulls were required  to have date of first proof between September 1992 and September 1997, to be born in a herd with at least one other  bull and to have sire and dam with official EBV when bull was selected for progeny testing. Records of sires with only one  son were also discarded. The dependent variable analyzed was the official genetic evaluation for a “quantity and quality  of milk” index (ILQ. The linear model to predict breeding values of bulls included the fixed class effects of herd origin of  bull, AI testing organization, birth year of bull, and estimated breeding values of sire and dam, both as linear covariates.  The R2of the model was 45% and a significant effect was found for genetic merit of sire (P   for herd origin of bull (P   nificant. The range of herd origin effect was 872 kg of ILQ. However, in this study, the causes of this result were not  clear; it may be due to numerous factors, one of which may be preferential treatment on dams of bulls. Analyses of resid-  uals on breeding value of proven bulls for ILQ showed a non significant effect of sire ID, after adjusting for parent aver-  age, herd origin effect and birth year effect. Although the presence of bias in genetic evaluation of dairy bulls is not evi-  dent, further research is recommended firstly to understand the reasons of the significant herd origin effect, secondly to  monitor and guarantee the greatest accuracy and reliability of genetic evaluation procedures. 

  18. Landscape-scale evaluation of asymmetric interactions between Brown Trout and Brook Trout using two-species occupancy models

    Science.gov (United States)

    Wagner, Tyler; Jefferson T. Deweber; Jason Detar; John A. Sweka

    2013-01-01

    Predicting the distribution of native stream fishes is fundamental to the management and conservation of many species. Modeling species distributions often consists of quantifying relationships between species occurrence and abundance data at known locations with environmental data at those locations. However, it is well documented that native stream fish distributions can be altered as a result of asymmetric interactions between dominant exotic and subordinate native species. For example, the naturalized exotic Brown Trout Salmo trutta has been identified as a threat to native Brook Trout Salvelinus fontinalis in the eastern United States. To evaluate large-scale patterns of co-occurrence and to quantify the potential effects of Brown Trout presence on Brook Trout occupancy, we used data from 624 stream sites to fit two-species occupancy models. These models assumed that asymmetric interactions occurred between the two species. In addition, we examined natural and anthropogenic landscape characteristics we hypothesized would be important predictors of occurrence of both species. Estimated occupancy for Brook Trout, from a co-occurrence model with no landscape covariates, at sites with Brown Trout present was substantially lower than sites where Brown Trout were absent. We also observed opposing patterns for Brook and Brown Trout occurrence in relation to percentage forest, impervious surface, and agriculture within the network catchment. Our results are consistent with other studies and suggest that alterations to the landscape, and specifically the transition from a forested catchment to one that contains impervious surface or agriculture, reduces the occurrence probability of wild Brook Trout. Our results, however, also suggest that the presence of Brown Trout results in lower occurrence probability of Brook Trout over a range of anthropogenic landscape characteristics, compared with streams where Brown Trout were absent.

  19. A trial of two trouts: Comparing the impacts of rainbow and brown trout on a native galaxiid

    Science.gov (United States)

    Young, K.A.; Dunham, J.B.; Stephenson, J.F.; Terreau, A.; Thailly, A.F.; Gajardo, G.; de Leaniz, C. G.

    2010-01-01

    Rainbow trout Oncorhynchus mykiss and brown trout Salmo trutta are the world's two most widespread exotic fishes, dominate the fish communities of most cold-temperate waters in the southern hemisphere and are implicated in the decline and extirpation of native fish species. Here, we provide the first direct comparison of the impacts of rainbow and brown trout on populations of a native fish by quantifying three components of exotic species impact: range, abundance and effect. We surveyed 54 small streams on the island of Chilo?? in Chilean Patagonia and found that the rainbow trout has colonized significantly more streams and has a wider geographic range than brown trout. The two species had similar post-yearling abundances in allopatry and sympatry, and their abundances depended similarly on reach-level variation in the physical habitat. The species appeared to have dramatically different effects on native drift-feeding Aplochiton spp., which were virtually absent from streams invaded by brown trout but shared a broad sympatric range with rainbow trout. Within this range, the species' post-yearling abundances varied independently before and after controlling for variation in the physical habitat. In the north of the island, Aplochiton spp. inhabited streams uninvaded by exotic trouts. Our results provide a context for investigating the mechanisms responsible for apparent differences in rainbow and brown trout invasion biology and can help inform conservation strategies for native fishes in Chilo?? and elsewhere. ?? 2010 The Authors. Journal compilation ?? 2010 The Zoological Society of London.

  20. Associations between endotoxin-induced metabolic changes and temperament in Brahman bulls.

    Science.gov (United States)

    Burdick Sanchez, N C; Carroll, J A; Randel, R D; Vann, R C; Welsh, T H

    2014-02-01

    The influence of temperament on the alteration of metabolic parameters in response to a lipopolysaccharide(LPS) challenge was investigated. Brahman bulls were selected based on temperament score. Bulls (10 months; 211±5kg BW; n = 6, 8 and 7 for Calm, Intermediate and Temperamental groups, respectively) were fitted with indwelling jugular catheters to evaluate peripheral blood concentrations of glucose, blood urea nitrogen (BUN),non-esterified fatty acids (NEFA), insulin, epinephrine and cortisol before and after LPS administration (0.5 μg/kg BW LPS). Feed intake was also recorded. Intermediate bulls consumed more feed than the Temperamental bulls during the challenge (p = 0.046). Pre-LPS glucose (p = 0.401) and BUN (p = 0.222) did not differ among the temperament groups. However, pre-LPS insulin (p = 0.023) was lower, whereas pre-LPS NEFA (p Brahman bulls following a provocative endotoxin challenge.Specifically, Temperamental bulls may preferentially utilize an alternate energy source (i.e. NEFA) to a greater degree than do bulls of Calm and Intermediate temperaments. The use of circulating NEFA from lipolysis may reduce the negative metabolic consequences of an immune response by allowing for a prompt answer to increasing energy demands required during immunological challenge, compared with the time required for glycogenolysis and gluconeogenesis. PMID:25225707

  1. Do native brown trout and non-native brook trout interact reproductively?

    Science.gov (United States)

    Cucherousset, J.; Aymes, J. C.; Poulet, N.; Santoul, F.; Céréghino, R.

    2008-07-01

    Reproductive interactions between native and non-native species of fish have received little attention compared to other types of interactions such as predation or competition for food and habitat. We studied the reproductive interactions between non-native brook trout ( Salvelinus fontinalis) and native brown trout ( Salmo trutta) in a Pyrenees Mountain stream (SW France). We found evidence of significant interspecific interactions owing to consistent spatial and temporal overlap in redd localizations and spawning periods. We observed mixed spawning groups composed of the two species, interspecific subordinate males, and presence of natural hybrids (tiger trout). These reproductive interactions could be detrimental to the reproduction success of both species. Our study shows that non-native species might have detrimental effects on native species via subtle hybridization behavior.

  2. Factors influencing brown trout reproductive success in Ozark tailwater rivers

    Science.gov (United States)

    Pender, D.R.; Kwak, T.J.

    2002-01-01

    The reproductive success of brown trout Salmo trutta in White River, Arkansas, tailwater reaches is highly variable, resulting in the need for supplemental stocking. A better understanding of the physical and biotic factors affecting reproduction and survival would enhance the contribution of wild fish. We compared fecundity, reproductive chronology, physical habitat, water quality, trout density, food availability, diet, predation, and competitive interactions among four tailwater reaches to identify factors influencing brown trout reproductive success. The fecundity and condition factor of prespawning brown trout were significantly lower at Beaver Tailwater, a reach known for reproductive failure, than at other sites, among which no differences were found. Brown trout spawning was observed from 11 October to 23 November 1996, and juvenile emergence began on 28 February 1997. Significant among-site differences were detected for spawning and juvenile microhabitat variables, but the variables fell within or near suitable or optimal ranges reported in the literature for this species. Age-0 brown trout density differed significantly among sites, but growth and condition did not. Predation by Ozark sculpin Cottus hypselurus on trout eggs or age-0 trout of any species was not observed among the 418 stomachs examined. Ozark sculpin density and diet overlap with age-0 brown trout were highest and invertebrate food availability and water fertility were lowest at Beaver Tailwater relative to the other reaches. Our findings indicate that differences in trophic conditions occur among tailwater reaches, and a lower system productive capacity was identified at Beaver Tailwater. We suggest that management efforts include refining the multispecies trout stocking regime to improve production efficiency, enhancing flow regulation, and increasing habitat complexity to increase invertebrate and fish productivity. Such efforts may lead to improved natural reproduction and the

  3. Modelling Waste Output from Trout Farms

    DEFF Research Database (Denmark)

    Frier, J. O.; From, J.; Larsen, Torben;

    1995-01-01

    The aim of waste modelling in aquaculture is to provide tools for simulating input, transformation, output and subsidiary degradation in recipients of organic compounds, nitrogen, and phosphorus. The direct purpose of this modelling is to make it possible for caretakers and water authorities to...... lacking. Within trout farming this work attempts to establish the different submodels and outlines future possibilities for synthesizing the knowledge to a numerical model....

  4. Brook trout passage performance through culverts

    Science.gov (United States)

    Goerig, Elsa; Castro-Santos, Theodore R.; Bergeron, Normand

    2016-01-01

    Culverts can restrict access to habitat for stream-dwelling fishes. We used passive integrated transponder telemetry to quantify passage performance of >1000 wild brook trout (Salvelinus fontinalis) attempting to pass 13 culverts in Quebec under a range of hydraulic and environmental conditions. Several variables influenced passage success, including complex interactions between physiology and behavior, hydraulics, and structural characteristics. The probability of successful passage was greater through corrugated metal culverts than through smooth ones, particularly among smaller fish. Trout were also more likely to pass at warmer temperatures, but this effect diminished above 15 °C. Passage was impeded at higher flows, through culverts with steep slopes, and those with deep downstream pools. This study provides insight on factors influencing brook trout capacity to pass culverts as well as a model to estimate passage success under various conditions, with an improved resolution and accuracy over existing approaches. It also presents methods that could be used to investigate passage success of other species, with implications for connectivity of the riverscape.

  5. TVA's Bull Run is most efficient plant in 1983

    International Nuclear Information System (INIS)

    A Utility Data Institute report ranked the Tennessee Valley Authority's Bull Run plant the most efficient generating station in 1983 because of its heat rate of 8910 Btu/kWh. The report includes plant-by-plant data on heat rate, production expense, and net output for the top 100 plants in each category. The 100 most efficient plants includes 82 coal-fired, 11 oil-fired, and 7 gas-fired stations, with nuclear plants excluded. Gulf States Utilities and West Texas Utilities gas-fired stations led the list on production expenses ranking, but nuclear stations had the lowest average production expense. Nuclear plants also had an advantage in fuel costs. Two tables describe the top 20 plants ranked by average expenses per net megawatt hour and by Btu per kilowatt hour. The report is available from UDI for $120

  6. Evidence for reproductive philopatry in the bull shark Carcharhinus leucas.

    Science.gov (United States)

    Tillett, B J; Meekan, M G; Field, I C; Thorburn, D C; Ovenden, J R

    2012-05-01

    Reproductive philopatry in bull sharks Carcharhinus leucas was investigated by comparing mitochondrial (NADH dehydrogenase subunit 4, 797 base pairs and control region genes 837 base pairs) and nuclear (three microsatellite loci) DNA of juveniles sampled from 13 river systems across northern Australia. High mitochondrial and low microsatellite genetic diversity among juveniles sampled from different rivers (mitochondrial φ(ST) = 0·0767, P 0·05) supported female reproductive philopatry. Genetic structure was not further influenced by geographic distance (P > 0·05) or long-shore barriers to movement (P > 0·05). Additionally, results suggest that C. leucas in northern Australia has a long-term effective population size of 11 000-13 000 females and has undergone population bottlenecks and expansions that coincide with the timing of the last ice-ages. PMID:22551174

  7. Mitochondrial genome of the bull shark Carcharhinus leucas (Carcharhiniformes: Carcharhinidae).

    Science.gov (United States)

    Chen, Xiao; Liu, Min; Peng, Zaiqing; Shi, Xiaofang

    2015-01-01

    The bull shark Carcharhinus leucas is a large elasmobranch species widespread in tropical and warm oceans, rivers and lakes. We first determine the complete mitogenome of C. leucas in this article. It is 16,704 bp in length, consists 37 genes and one control region with the typical gene order in vertebrates. The ND6 gene used the rare AGG as stop codon. The 22 tRNA genes ranged from 67 to 75 bp. The tRNA-Ser2 lacks the dihydrouridine arm and cannot form the typical cloverleaf structure. The control region is 1066 bp in length with high A+T and low G contents. PMID:24409857

  8. MEAT QUALITY FROM CHAROLAIS BULLS FED DIETS WITH DIFFERENT LEVELS OF CORN SILAGE INCLUSION

    OpenAIRE

    Giulio Cozzi; Alessandro Mazzenga

    2007-01-01

    A sample of 6 intensive beef farms was selected according to the feeding plan adopted during the fattening period of Charolais bulls. Two farms did not include any corn silage in the diet (CS0), while corn silage represented 22% of the dietary DM in the second group of 2 farms (CS22), and it raised up to 44% of the dietary DM in the last 2 farms (CS44). Five bulls were randomly selected from each farm to be slaughtered in the same abattoir. Bulls age was similar across treatments but the CS44...

  9. Enumeration of fungi in fruits by the most probable number method.

    Science.gov (United States)

    Watanabe, Maiko; Tsutsumi, Fumiyuki; Lee, Ken-ichi; Sugita-Konishi, Yoshiko; Kumagai, Susumu; Takatori, Kosuke; Hara-Kudo, Yukiko; Konuma, Hirotaka

    2010-01-01

    In this study, enumeration methods for fungi in foods were evaluated using fruits that are often contaminated by fungi in the field and rot because of fungal contaminants. As the test methods, we used the standard most probable number (MPN) method with liquid medium in test tubes, which is traditionally used as the enumeration method for bacteria, and the plate-MPN method with agar plate media, in addition to the surface plating method as the traditional enumeration method for fungi. We tested 27 samples of 9 commercial domestic fruits using their surface skin. The results indicated that the standard MPN method showed slow recovery of fungi in test tubes and lower counts than the surface plating method and the plate-MPN method in almost all samples. The fungal count on the 4th d of incubation was approximately the same as on the 10th d by the surface plating method or the plate-MPN method, indicating no significant differences between the fungal counts by these 2 methods. This result indicated that the plate-MPN method had a number agreement with the traditional enumeration method. Moreover, the plate-MPN method has a little laborious without counting colonies, because fungal counts are estimated based on the number of plates with growing colonies. These advantages demonstrated that the plate-MPN method is a comparatively superior and rapid method for enumeration of fungi. PMID:21535611

  10. Performance of continuous biodigestors supplied by young bull waste

    Energy Technology Data Exchange (ETDEWEB)

    Costa, Monica Sarolli S. de M. [Universidade Estadual do Oeste do Parana (UNIOESTE), Cascavel, PR (Brazil)], E-mail: monicas@unioeste.br; Lucas Junior, Jorge de [Universidade Estadual Paulista (FCA/UNESP), Jaboticabal, SP (Brazil). Fac. de Ciencias Agrarias e Veterinarias; Pivetta, Laercio Augusto [Universidade Estadual do Oeste do Parana (UNIOESTE), Marechal C. Rondon, PR (Brazil); Costa, Luiz A. de Mendonca

    2008-07-01

    The various systems of livestock farming in the industrial model promote physical and chemical changes on waste. In the fattening of cattle in the model of confinement for young bulls has been a reversal in the proportion between roughage and concentrate, or the animals receive a higher amount of protein compared to the traditional system of confinement. This change of the waste characteristics involves modification in the system of treatment used. In this work, it was aimed to evaluate the performance of batch biodigestors operated in continuous system, supplied by young bulls waste which received two differentiated diets by the proportion between roughage and concentrate, whether or not containing inoculum in the substrate composition and subjected to three levels of temperature (25, 35 and 40 deg C). The parameters evaluated were: reduction of total solids (TS) and volatile (VS), and the potential for biogas production. The results showed a reduction of TS higher in the treatment which was not used inoculum for diet 1 and 2 with the exception of the treatment which the substrate was referred to temperature of 40 deg C on diet 2. For the reduction of VS there was no interference from the use of inoculum on diet 1. On diet 2, the largest reductions were observed without the use of inoculum, with the exception of the 40 deg C temperature. For the potential for biogas production the treatment where they used waste derived from animals fed with diet 2, with the use of inoculum, in the temperature of 40 deg C showed the greatest value, or 0.53 m{sup 3} of biogas per kg TS added. (author)

  11. Seminal plasma proteome of electroejaculated Bos indicus bulls.

    Science.gov (United States)

    Rego, J P A; Crisp, J M; Moura, A A; Nouwens, A S; Li, Y; Venus, B; Corbet, N J; Corbet, D H; Burns, B M; Boe-Hansen, G B; McGowan, M R

    2014-07-01

    The present study describes the seminal plasma proteome of Bos indicus bulls. Fifty-six, 24-month old Australian Brahman sires were evaluated and subjected to electroejaculation. Seminal plasma proteins were separated by 2-D SDS-PAGE and identified by mass spectrometry. The percentage of progressively motile and morphologically normal sperm of the bulls were 70.4 ± 2.3 and 64 ± 3.2%, respectively. A total of 108 spots were identified in the 2-D maps, corresponding to 46 proteins. Binder of sperm proteins accounted for 55.8% of all spots detected in the maps and spermadhesins comprised the second most abundant constituents. Other proteins of the Bos indicus seminal plasma include clusterin, albumin, transferrin, metalloproteinase inhibitor 2, osteopontin, epididymal secretory protein E1, apolipoprotein A-1, heat shock 70 kDa protein, glutathione peroxidase 3, cathelicidins, alpha-enolase, tripeptidyl-peptidase 1, zinc-alpha-2-glycoprotein, plasma serine protease inhibitor, beta 2-microglobulin, proteasome subunit beta type-4, actin, cathepsins, nucleobinding-1, protein S100-A9, hemoglobin subunit alpha, cadherin-1, angiogenin-1, fibrinogen alpha and beta chain, ephirin-A1, protein DJ-1, serpin A3-7, alpha-2-macroglobulin, annexin A1, complement factor B, polymeric immunoglobulin receptor, seminal ribonuclease, ribonuclease-4, prostaglandin-H2 d-isomerase, platelet-activating factor acetylhydrolase, and phosphoglycerate kinase 1. In conclusion, this work uniquely portrays the Bos indicus seminal fluid proteome, based on samples from a large set of animals representing the Brahman cattle of the tropical Northern Australia. Based on putative biochemical attributes, seminal proteins act during sperm maturation, protection, capacitation and fertilization. PMID:24889044

  12. Estrogenic effects of phytoestrogens in brown trout (Salmo trutta)

    DEFF Research Database (Denmark)

    Nielsen, Louise Marie; Holbech, Henrik; Bjerregaard, Poul;

    2010-01-01

    , the potential effect of the waterborne phytoestrogens on endemic fish species is largely unknown. In the present investigation, the estrogenic effect of biochanin A was tested in brown trout through water exposure experiments. Juvenile brown trout of both sexes were exposed to different concentrations...

  13. SuchThatCast Episode 3: J.D. Trout

    NARCIS (Netherlands)

    Søraker, J.H.

    2012-01-01

    SuchThatCast goes mobile in the third episode, as I interview J.D. Trout on the appr. 2 hour train ride between Enschede and Schiphol airport. Trout received his PhD in Philosophy at Cornell University and is currently Professor of Philosophy and Psychology at Loyola University Chicago. He was recen

  14. Challenge models for RTFS in rainbow trout fry (Oncorhynchus mykiss)

    DEFF Research Database (Denmark)

    Henriksen, Maya Maria Mihályi; Madsen, Lone; Dalsgaard, Inger

    2011-01-01

    The fish pathogen Flavobacterium psychrophilum is one of the main causes of mortality in fry of farmed rainbow trout (Oncorhynchus mykiss) and other salmonid fish. The disease following infection is often called bacterial coldwater disease (BCWD) in USA and rainbow trout fry syndrome (RTFS) in...

  15. The Effects of Acute Stress on Rainbow Trout (Oncorhynchus mykiss)

    OpenAIRE

    KUBİLAY, Ayşegül

    2002-01-01

    The physiological effects of acute stressors (transport, handling, netting and confinement) on rainbow trout in an aquaculture system were investigated. Serum cortisol level, serum glucose and lysozyme activity were determined in rainbow trout stressed by acute stressors, and compared with those of unstressed (control) fish. Serum cortisol, glucose levels and lysozyme activity were significantly higher(P

  16. Some Direct Gillnet Selectivity Tests for Brown Trout Populations

    OpenAIRE

    O Grady, M. F.

    1981-01-01

    Direct gillnet selectivity tests for introduced brown trout populations in three Irish lakes are outlined. The net gangs and netting procedure utilised are described. Data indicates that the gear used was capable of capturing a random cross section of a trout stock in the length frequency range 19.8 to 47.7 centimetres.

  17. Otter ( Lutra lutra ) predation on stocked brown trout ( Salmo trutta ) in two Danish lowland rivers

    DEFF Research Database (Denmark)

    Jacobsen, Lene

    2005-01-01

    This study aimed to evaluate otter predation on stocked trout. Large hatchery-reared trout (16-30 cm) were stocked into two Danish rivers with different fish populations. Otter diet before and after trout stocking was determined by analysing 685 spraints, collected regularly during the 35-day study...... period. Fish composition in the rivers before stocking was assessed by electrofishing. In River Trend, a typical trout river, the proportion of trout in the otter diet increased from 8% before stocking to 33% a few days after stocking. Moreover, trout lengths in the diet changed significantly towards the...... lengths of stocked trout, indicating that newly stocked trout were preferred to wild trout. In River Skals, dominated by cyprinids, there was no change in otter diet after stocking of hatchery trout, i.e., these were ignored by otter. Otter predation should be taken into account together with fish and...

  18. The isolation, enumeration, and characterization of Rhizobium bacteria of the soil in Wamena Biological Garden

    Directory of Open Access Journals (Sweden)

    SRI PURWANINGSIH

    2005-04-01

    Full Text Available The eleven soil samples have been isolated and characterized. The aims of the study were to get the pure culture and some data which described about enumeration and especially their characters in relation to the acids and bases reaction in their growth. The isolation of the bacteria use Yeast Extract Mannitol Agar medium (YEMA while the characterization by using YEMA medium mixed with Brom Thymol Blue and Congo Red indicators respectively. The results showed that eighteen isolates have been isolated which consisted of three low growing and fifteen fast growing bacteria. Two isolates were not indicated Rhizobium and sixteen were Rhizobium. Density of Rhizobium enumeration was varied which related to soil organic matter content. The enumeration bacteria in YEMA medium were in the range of 0.6 x 105 and 11.6 x 105 CFU /g soil. The highest population was found in soil sample of Wieb vegetation.

  19. Spurious automated platelet count. Enumeration of yeast forms as platelets by the cell-DYN 4000.

    Science.gov (United States)

    Latif, Shahnila; Veillon, Diana M; Brown, Donald; Kaltenbach, Jenny; Curry, Sherry; Linscott, Andrea J; Oberle, Arnold; Cotelingam, James D

    2003-12-01

    We recently encountered a patient with thrombocytopenia secondary to multiple drug therapy, disseminated prostatic adenocarcinoma, and sepsis who had a sudden decrease in his platelet count as enumerated by the Cell-DYN 4000 hematology analyzer (Abbott Diagnostics, Santa Clara, CA). A manual platelet count performed thereafter was even lower. The etiology of the spurious platelet count was clarified when numerous yeast forms were observed on routine microscopy of the peripheral blood smear. Subsequently, these organisms were identified as Candida glabrata from a positive blood culture (BACTEC 9240, Becton Dickinson, Cockeysville, MD). To our knowledge, this is the first report of spurious enumeration of yeast forms as platelets in an automated hematology system. The principle underlying platelet enumeration by the Cell-DYN 4000 system and other hematology analyzers and the value of microscopy on peripheral smears with unexpected CBC count results are discussed. PMID:14671977

  20. EFFECT OF FLUCTUATING EXPOSURES ON THE ACUTE TOXICITY OF AMMONIA TO RAINBOW TROUT (SALMO GAIRDNERI) AND CUTTHROAT TROUT (S. CLARKI)

    Science.gov (United States)

    Acute toxicity bioassays in which fish were exposed to short-term cyclic fluctuations of ammonia were conducted on rainbow trout (Salmo gairdneri) and on cutthroat trout (S. clarki). Companion tests were also conducted in which test fish were subjected to ammonia at constant conc...

  1. Effects of water temperature and fish size on predation vulnerability of juvenile humpback chub to rainbow trout and brown trout

    Science.gov (United States)

    Ward, David L.; Morton-Starner, Rylan

    2015-01-01

    Predation on juvenile native fish by introduced Rainbow Trout and Brown Trout is considered a significant threat to the persistence of endangered Humpback Chub Gila cypha in the Colorado River in the Grand Canyon. Diet studies of Rainbow Trout and Brown Trout in Glen and Grand canyons indicate that these species do eat native fish, but impacts are difficult to assess because predation vulnerability is highly variable, depending on prey size, predator size, and the water temperatures under which the predation interactions take place. We conducted laboratory experiments to evaluate how short-term predation vulnerability of juvenile native fish changes in response to fish size and water temperature using captivity-reared Humpback Chub, Bonytail, and Roundtail Chub. Juvenile chub 45–90 mm total length (TL) were exposed to adult Rainbow and Brown trouts at 10, 15, and 20°C to measure predation vulnerability as a function of water temperature and fish size. A 1°C increase in water temperature decreased short-term predation vulnerability of Humpback Chub to Rainbow Trout by about 5%, although the relationship is not linear. Brown Trout were highly piscivorous in the laboratory at any size > 220 mm TL and at all water temperatures we tested. Understanding the effects of predation by trout on endangered Humpback Chub is critical in evaluating management options aimed at preserving native fishes in Grand Canyon National Park.

  2. Metals-contaminated benthic invertebrates in the Clark Fork River, Montana: Effects on age-0 brown trout and rainbow trout

    Science.gov (United States)

    Woodward, Daniel F.; Farag, Aïda M.; Bergman, Harold L.; Delonay, Aaron J.; Little, Edward E.; Smiths, Charlie E.; Barrows, Frederic T.

    1995-01-01

    Benthic organisms in the upper Clark Fork River have recently been implicated as a dietary source of metals that may be a chronic problem for young-of-the-year rainbow trout (Oncorhynchus mykiss). In this present study, early life stage brown trout (Salmo trutta) and rainbow trout were exposed for 88 d to simulated Clark Fork River water and a diet of benthic invertebrates collected from the river. These exposures resulted in reduced growth and elevated levels of metals in the whole body of both species. Concentrations of As, Cd, Cu, and Pb increased in whole brown trout; in rainbow trout, As and Cd increased in whole fish, and As also increased in liver. Brown trout on the metals-contaminated diets exhibited constipation, gut impaction, increased cell membrane damage (lipid peroxidation), decreased digestive enzyme production (zymogen), and a sloughing of intestinal mucosal epithelial cells. Rainbow trout fed the contaminated diets exhibited constipation and reduced feeding activity. We believe that the reduced standing crop of trout in the Clark Fork River results partly from chronic effects of metals contamination in benthic invertebrates that are important as food for young-of-the-year fish.

  3. Admixture analysis of stocked brown trout populations using mapped microsatellite DNA markers: indigenous trout persist in introgressed populations

    DEFF Research Database (Denmark)

    Hansen, Michael Møller; Mensberg, Karen-Lise Dons

    2009-01-01

    , but resolution is low if genetic differentiation is weak. Here, we analyse stocked brown trout populations represented by historical (1943-1956) and contemporary (2000s) samples, where genetic differentiation between wild populations and stocked trout is weak (pair-wise F-ST of 0.047 and 0.053). By...

  4. Physical examination of the reproductive organs of range beef bulls in Mozambique.

    Science.gov (United States)

    Rocha, A; Mackinnon, D; Mandlhate, F

    1986-03-01

    Physical examinations were performed on 3991 bulls reared in subtropical (75%) and tropical (25%) Mozambique. A culling rate of 16.3% (651 sires) was found. The range of culling rate between farms varied from 3 to 44%. The main culling reasons were a) epididymitis, b) atrophy and/or hypoplasia, and c) testicular fibrosis (contributing to 30.4, 20.9, and 15.2%, respectively, of the culled bulls). Epididymitis-vaginitis (epivag) syndrome was considered the main reason for the high incidence of epididymitis and testicular fibrosis. A highly significant difference (PSimmental (37.7%) and Brahman (13.1%) bulls was found. A more comprehensive investigation of culling rate of different breeds used in the country is needed, as well as a program for controlling epivag in the more affected areas. Examining the reproductive organs of the beef bulls in Mozambique before the breeding season is very important to improve fertility in the beef herds. PMID:16726130

  5. Quality Traits of Meat from Young Limousin, Charolais and Hereford Bulls

    Directory of Open Access Journals (Sweden)

    Janina Pogorzelska*, Jan Miciński, Halina Ostoja1, Ireneusz M. Kowalski2, Józef Szarek3 and Emilia Strzyżewska3

    2013-01-01

    Full Text Available The objective of this study was to determine the effects of beef cattle breed and muscle type on the proximate chemical composition and quality traits of meat, including processing suitability. The experimental materials comprised samples of musculus longissimus dorsi (LD muscle and musculus semitendinosus (ST muscle collected from the carcasses of young Limousin, Charolais and Hereford bulls. The chemical composition, texture, hydration and color parameters of LD and ST muscles were determined. Meat from Limousin and Charolais bulls, characterized by higher body mass at slaughter contained more protein than meat from Hereford bulls. Meat from Hereford bulls had a higher fat content, compared with the other two breeds. Texture parameters, including hardness, gumminess and chewiness, varied depending on muscle type and cattle breed. An analysis of the maximum shear force values showed that the mechanical properties of beef also varied depending on cattle breed and muscle type.

  6. Longitudinal strain bull's eye plot patterns in patients with cardiomyopathy and concentric left ventricular hypertrophy.

    Science.gov (United States)

    Liu, Dan; Hu, Kai; Nordbeck, Peter; Ertl, Georg; Störk, Stefan; Weidemann, Frank

    2016-01-01

    Despite substantial advances in the imaging techniques and pathophysiological understanding over the last decades, identification of the underlying causes of left ventricular hypertrophy by means of echocardiographic examination remains a challenge in current clinical practice. The longitudinal strain bull's eye plot derived from 2D speckle tracking imaging offers an intuitive visual overview of the global and regional left ventricular myocardial function in a single diagram. The bull's eye mapping is clinically feasible and the plot patterns could provide clues to the etiology of cardiomyopathies. The present review summarizes the longitudinal strain, bull's eye plot features in patients with various cardiomyopathies and concentric left ventricular hypertrophy and the bull's eye plot features might serve as one of the cardiac workup steps on evaluating patients with left ventricular hypertrophy. PMID:27165726

  7. Development of radiation sterilized dip slides for enumerating lactic acid bacteria and total count in foodstuffs

    Science.gov (United States)

    Eisenberg, E.; Padova, R.; Kirsch, E.; Weissman, Sh.; Hirshfeld, T.; Shenfeld, A.

    APT agar (APT) used for enumeration of lactic acid bacteria and Plate Count agar (PCA) applied for total count were sterilized by gamma radiation using radiation dose of 10-15 kGy. Radiosterilized PCA and APT modified by adding catalase prior to irradiation, or APT with increased content of yeast extract performed, as well as, the heat sterilized commercial media. Growth performance was evaluated on several strains of microorganisms, as well as, by enumeration of bacteria in food products. Radiosterilization of culture media in final packaging, can be applied to produce dip slide kits containing PCA or APT.

  8. A note on the enumeration of directed animals via gas considerations

    OpenAIRE

    Albenque, Marie

    2009-01-01

    In the literature, most of the results about the enumeration of directed animals on lattices via gas considerations are obtained by a formal passage to the limit of enumeration of directed animals on cyclical versions of the lattice. ¶ Here we provide a new point of view on this phenomenon. Using the gas construction given in [Electron. J. Combin. (2007) 14 R71], we describe the gas process on the cyclical versions of the lattices as a cyclical Markov chain (roughly speaking, Markov cha...

  9. Development of radiation sterilized dip slides for enumerating lactic acid bacteria and total count in foodstuffs

    International Nuclear Information System (INIS)

    APT agar (APT) used for enumeration of lactic acid bacteria and Plate Count agar (PCA) applied for total count were sterilized by gamma radiation using radiation dose of 10-15 kGy. Radiosterilized PCA and APT modified by adding catalase prior to irradiation, or APT with increased content of yeast extract performed, as well as, the heat sterilized commercial media. Growth performance was evaluated on several strains of microorganisms, as well as, by enumeration of bacteria in food products. Radiosterilization of culture media in final packaging, can be applied to produce dip slide kits containing PCA or APT. (author)

  10. Enumeration of Combinatorial Classes of Single Variable Complex Polynomial Vector Fields

    DEFF Research Database (Denmark)

    Dias, Kealey

    A vector field in the space of degree d monic, centered single variable complex polynomial vector fields has a combinatorial structure which can be fully described by a combinatorial data set consisting of an equivalence relation and a marked subset on the integers mod 2d-2, satisfying certain...... in a valid way. We first enumerate all combinatorial classes with respect to degree d, and then we enumerate the combinatorial classes having a specific dimension q in parameter space. In both cases, a recursion equation and implicit expressions for the algebraic generating functions are calculated...

  11. Growth rate differences between resident native brook trout and non-native brown trout

    Science.gov (United States)

    Carlson, S.M.; Hendry, A.P.; Letcher, B.H.

    2007-01-01

    Between species and across season variation in growth was examined by tagging and recapturing individual brook trout Salvelinus fontinalis and brown trout Salmo trutta across seasons in a small stream (West Brook, Massachusetts, U.S.A.). Detailed information on body size and growth are presented to (1) test whether the two species differed in growth within seasons and (2) characterize the seasonal growth patterns for two age classes of each species. Growth differed between species in nearly half of the season- and age-specific comparisons. When growth differed, non-native brown trout grew faster than native brook trout in all but one comparison. Moreover, species differences were most pronounced when overall growth was high during the spring and early summer. These growth differences resulted in size asymmetries that were sustained over the duration of the study. A literature survey also indicated that non-native salmonids typically grow faster than native salmonids when the two occur in sympatry. Taken together, these results suggest that differences in growth are not uncommon for coexisting native and non-native salmonids. ?? 2007 The Authors.

  12. Diurnal stream habitat use of juvenile Atlantic salmon, brown trout and rainbow trout in winter

    Science.gov (United States)

    Johnson, J.H.; Douglass, K.A.

    2009-01-01

    The diurnal winter habitat of three species of juvenile salmonids was examined in a tributary of Skaneateles Lake, NY to compare habitat differences among species and to determine if species/age classes were selecting specific habitats. A total of 792 observations were made on the depth, velocity, substrate and cover (amount and type) used by sympatric subyearling Atlantic salmon, subyearling brown trout and subyearling and yearling rainbow trout. Subyearling Atlantic salmon occurred in shallower areas with faster velocities and less cover than the other salmonid groups. Subyearling salmon was also the only group associated with substrate of a size larger than the average size substrate in the study reach during both winters. Subyearling brown trout exhibited a preference for vegetative cover. Compared with available habitat, yearling rainbow trout were the most selective in their habitat use. All salmonid groups were associated with more substrate cover in 2002 under high flow conditions. Differences in the winter habitat use of these salmonid groups have important management implications in terms of both habitat protection and habitat enhancement.

  13. Komunikační strategie značky Red Bull

    OpenAIRE

    Úblová, Tamara

    2012-01-01

    The thesis analyses current marketing strategy of Red Bull. The thesis examines the connection between specific marketing activities of Red Bull and their impact on energy drink's consumers. In the theoretical part of the thesis terms such as marketing communication concepts and their developing trends are coined and examined. The biggest part is focused on event marketing -- both from theoretical and practical point of view. The second part examines the competitive environment of the energy ...

  14. Who does Red Bull give wings to? Sensation seeking moderates sensitivity to subliminal advertisement

    OpenAIRE

    Bustin, Gaëlle M.; Jones, Daniel N.; Hansenne, Michel; Quoidbach, Jordi

    2015-01-01

    This study assessed whether subliminal priming of a brand name of a drink can affect people’s choices for the primed brand, and whether this effect is moderated by personality traits. Participants with different levels of sensation seeking were presented subliminally with the words Red Bull or Lde Ublr. Results revealed that being exposed to Red Bull lead on average to small increases in participants’ preferences for the primed brand. However, this effect was twice as strong for participants ...

  15. Water bulls of Balkan and other world’s traditions: Origins of conception

    Directory of Open Access Journals (Sweden)

    Trubarac-Matić Đorđina

    2016-01-01

    Full Text Available The efforts to determine the origin of beliefs in the aquatic daimon called water bull (which are ethnographically attested in Serbia, Macedonia and Bulgaria, and for which there have not been found parallels in other Slavic traditions, led the scholarship to see it as a recidive from the Greco-Roman period. The two major hypotheses tried to link the stories about killing of the water bull with: 1 the Athenian bouphonia; 2 the mithraic scene of tauroctony. The paper discusses these hypotheses and their weaknesses, and proposes a new approach: shifting attention towards other worlds’ traditions in which the water bulls are attested - those of Yakuts, Mongols, Celts, Mapuche, Khoekhoe and San - with the aim to establish the level, and determine the type of the possible similarities between them. The results of the comparative analysis show a very high degree of overlapping of ideas - those that probably were parts of a pristine concept of a water bull. They concern: the appearance, habitat, characteristics, behavior, as well as a number of phenomena associated with water bulls (predictions, thunder, lightning, storm, medicine. This leads the author to conclude that the conception of the water bull is very archaic and probably originating from a same, although uncertain source, which cannot be explained by intercultural contacts. The beliefs and the religious and magical practice of the Khoisan show that water bulls operate functionally - with the fullness of their religious potential - in animistic type of religious traditions (where the origin of the concept should be looked for. This indicates that these animistic ideas might lie at the root of the bull-like features of the storm gods from the posterior polytheistic religions. Further investigation in this direction is proposed. [Projekat Ministarstva nauke Republike Srbije, br. 47016: Interdisciplinarno istraživanje kulturnog i jezičkog nasleđa Srbije. Izrada multimedijalnog portala

  16. Victims and offenders in a situation of bulling: who are they?

    OpenAIRE

    Ekimova V.I.; Zalaldinova A.M.

    2016-01-01

    Bulling is one of the most common form of violence in the school environment, adversely affecting the physical and mental health of all its members. The article provides a brief review of foreign studies of this phenomenon, the actual statistics of its prevalence and forms of manifestation. Research focuses on the General characteristics of the bulling participants – aggressors and victims of aggression. The article points to the descriptive character of the studies and contradictory results....

  17. EFFECT OF TWO DIFFERENT ANTIBIOTIC COMBINATIONS ON FERTILITY OF FROZEN BUFFALO AND SAHIW AL BULL SEMEN

    Directory of Open Access Journals (Sweden)

    S.M.H. Andrabi, N. Ahmad, A. Abbas and M. Anzar

    2001-09-01

    Full Text Available This study was carried out to identify the suitable antibiotic combinations in semen extender for improvement in fertility of frozen semen of buffalo and cow (Sahiwal bulls to obtain better pregnancy rate through artificial insemination (AI. For this study eight first ejaculates, four each from a buffalo and a cow (Sahiwal bull were used. The ejaculates were split-sampled and diluted with Tris-citric acid extender (at 37°C; 50x 106 spermatozoa/mI, containing either SP (streptomycin 1000 ~g/ml and penicillin 1000 IU/ml or GTLS (gentamycin 500 µg/ml, Tylosin 100 µg/ml and linco-spectin 300/600 µg/ml. There was no difference in post-thaw motility for these samples. Fertility test based on 75-days first service pregnancy rate was determined under field conditions. A total of 400 inseminations were recorded, 200 for each buffalo and cow (Sahiwal with J 00 of each antibiotic combination, respectively. Fertility rates for SP-based frozen semen of buffalo bull were 41.66% and were 55.2% for GTLS-containing frozen semen, respectively. The results for GTLS were higher (P<0.0001 than SP. Similarly, fertility rates were higher (P<0.0001 for GTLS-based frozen semen of Sahiwal bull (78.78% than SP-containing frozen semen (69.6% of the same specie. Fertility rates also differed due to species of donor bulls. They were better (P<0.0001 for the frozen Sahiwal bull semen than that of the buffalo bull in both SP and GTLS- based frozen semen samples, respectively. In conclusion. seminal quality measured by field fertility trial indicated GTLS combination of antibiotics added to the semen extender was better for improvement in the fertility of frozen buffalo and Sahiwal bull semen, by yielding better pregnancy rates through AI.

  18. Effects of selection for scrotal circumference in Limousin bulls on reproductive and growth traits of progeny.

    Science.gov (United States)

    Moser, D W; Bertrand, J K; Benyshek, L L; McCann, M A; Kiser, T E

    1996-09-01

    Nine pairs of Limousin bulls from nine contemporary groups were acquired, with each pair consisting of one large scrotal circumference (SC) bull and one small SC bull. Average adjusted yearling scrotal circumferences were 36.3 cm (SD 1.6 cm) and 28.5 cm (SD .9 cm) for large SC (LP) and small SC (SP) bulls, respectively. In addition to the phenotypic grouping, non-parent SC EPD were used to group bulls into high (HE, > .53 cm), average (AE), and low (LE, Brangus x Hereford cows each yr for 1 to 3 yr. Birth weights, weaning and yearling weights and heights, and ultrasound measurements for backfat and ribeye measurements were taken on 407 progeny. Blood samples were collected on 210 heifer progeny when they averaged 11, 13, and 15 mo of age to determine whether they had reached puberty. When subjected to a breeding soundness exam (BSE), LP bulls scored higher (P < .01) for motility as well as total BSE score. The LP calves had heavier birth weights (P < .05) and greater testicular mass at weaning (P < .01) than SP calves. The HE and AE bull calves had greater (P < .02) testicular mass than did the LE bull calves. A greater (P < .05) percentage of HE heifers had reached puberty by the 11- and 13-mo measurements than either the AE or LE heifers. The HE heifers reached puberty at a younger age than AE (P < .01) or LE (P < .001) heifers. Selection using SC EPD was more effective than phenotypic selection in reducing age at puberty in daughters. PMID:8880405

  19. RELATIONSHIPS BETWEEN ULTRASONIC ESTIMATES OF CARCASS TRAITS AND BODY MEASUREMENTS OF JAPANESE BLACK BULL

    OpenAIRE

    Sri Rachma, Aprilita Bugiwati

    2008-01-01

    This experiment was done at 292 head of Japanese black bull at Kagoshima and Miyazaki Prefectural Experimental Stations Japan to find out the relationship between ultrasonic estimates of carcass traits and body measurements as one of criteria to select Japanese black bull. The carcass traits of 20 months of age were predicted using the ultrasonic machine. The body dimensions were measured at the end of performance test (12 months of age) and 16 months of age. The ultrasonic evaluati...

  20. Intake, physiological parameters and behavior of Angus and Nellore bulls subjected to heat stress

    Directory of Open Access Journals (Sweden)

    Ériton Egidio Lisboa Valente

    2015-12-01

    Full Text Available Genetics differences between breeds may determine the tolerance to high temperature, effect dry matter intake and consequently cattle performance. The effect of temperature and humidity index (THI on diurnal, nocturnal and daily intake, water intake, physiologic parameters and behavior of Nellore (B. indicus and Angus (B. taurus bulls were evaluated. Eight Angus and eight Nellore young bulls (337±7.4 kg and 16 months of age were allocated in two climate-controlled rooms for 32 days. In the period 1, all bulls were housed in thermoneutral conditions (TN, THI = 72.6 for 10 days. In period 2 (10 days, four Angus and four Nellore bulls were subjected to low heat stress (LHS, THI = 76.4 in daytime, and four Angus and four Nellore bulls were subjected to high heat stress (HHS, THI = 81.5 in daytime. The diurnal and daily dry matter intake (DMI of Nellore were not affected (P>0.05 by heat stress. However, Angus bulls decreased diurnal DMI by 24% and daily DMI decreased (P<0.05 by 15% on HHS. In TN Angus bulls had higher (P<0.05 daily DMI (36.2 g/kg of BW than Nellore (29.1 g/kg of BW, but in HHS they had similar (P>0.05 daily DMI (31.6 and 30.2 g/kg of BW, respectively. We observed an increase (P<0.05 in respiratory frequency, but water intake was not affected (P>0.05 by heat stress. The heart rate decreased (P<0.05 with heat stress. No differences were found (P>0.05 in feeding behavior. Therefore, THI stress threshold should distinct for Angus and Nellore bulls. The use of feed intake information may improve the prediction of thermic discomfort on specific climate condition. 

  1. Study on the reproductive capacity of bulls of the autochthonous Rhodope Shorthorn cattle breed

    Directory of Open Access Journals (Sweden)

    Radka Malinova

    2015-06-01

    Full Text Available The sperm production of bulls from the autochthonous Rhodope Shorthorn cattle breed was studied. The breed is among the smallest in Europe, the average weight of the cows ranging from 200 to 250 kg, and of the bulls from 330 to 370 kg. It was found that during the first 6 months from the start of exploitation, at the age of the bulls from 18 to 24 months, AI bulls had high reproductive capacity. The ejaculate volume was 1,74±0,09 ml in average (LS, the percentage of motile spermatozoa was 74,3±3,48% and the concentration 1268±13,1 x 106/ml. It was established that the bull had a significant impact on the reproductive performance, but the individual differences in the main characteristics were not high – motility 71,8-77,0%, concentration – 1222-1324 х 106/ml. The season also had a significant effect on the percentage of motile spermatozoa. Within the period from January to June, the highest reproductive capacity of the bulls was observed from February to May and the lowest in June.

  2. Are the Scaling Properties of Bull and Bear Markets Identical? Evidence from Oil and Gold Markets

    Directory of Open Access Journals (Sweden)

    Samet Günay

    2014-10-01

    Full Text Available In this study, the scaling properties of the oil and gold return volatilities have been analyzed in the context of bull and bear periods. In the determination of bull and bear turning points, we used the Modified Bry-Boschan Quarterly (MBBQ algorithm. Results showed that the business cycle phase shapes of the bear periods in the oil market are almost linear, whereas the bull and bear periods of the gold and bull period of the oil market are convex. This means that there are sharper declines in the bear period of the oil market. Following the detection of bull and bear periods, scaling exponent H analysis was performed via the aggregated variance, Higuchi’s statistic, Peng’s statistic, rescaled range, boxed periodogram and wavelet fit models, which are from the time, frequency and wavelet domains. As there are conflicts about the credibility of these methods in the literature, we have used the shuffling procedure in order to determine the most robust methods. According to the results, bear periods have higher volatility persistency than bull periods.

  3. Concurrent testing of breeding bulls for bovine herpesvirus 1 infection (BHV-1 in India

    Directory of Open Access Journals (Sweden)

    Chintu Ravishankar

    2013-06-01

    Full Text Available In this study, sera from 65 breeding and 19 training bulls from Uttar Pradesh State in north India were tested for bovine herpesvirus 1 (BHV-1 antibodies by enzyme linked immunosorbent assay (ELISA and virus neutralization test (VNT. The VNT test could detect 56 (86.15% and 9 (47.37% of the samples from breeding and training bulls as positive for BHV-1 antibodies whereas in ELISA 63 (96.92% and 10 (52.63% were found positive, respectively. Semen samples from the breeding bulls were simultaneously tested by the Taqman based real time PCR (qPCR. Of the 65 samples screened, only 40 (61.54% were found to contain BHV-1 DNA indicating that all the seropositive bulls are not shedding the virus in semen. When the RT-PCR positive samples were subjected to virus isolation on Madin-Darby bovine kidney (MDBK cells, no virus isolates could be obtained. The advantages of concomitant testing of serum and semen of breeding bulls and measures for control of BHV-1 infections in bull farms are discussed.

  4. Growth performance, carcass characteristics and meat quality of finishing bulls fed crude glycerin-supplemented diets

    Directory of Open Access Journals (Sweden)

    Mônica Chaves Françozo

    2013-04-01

    Full Text Available This study was conducted to evaluate the performance, carcass characteristics and chemical composition of Longissimusmuscle (LM of the bulls. Twenty-four Nellore bulls were used in a complete randomised design. The bulls were randomly assigned to one of the three diets containing 0, 5 or 12% glycerin. Final BW and ADG were similar (P>0.05 between the bulls fed with 5 or 12% of glycerin but were higher (P0.05 by glycerin level. Hot carcass weight increased (P0.05 the conformation, colour, texture, marbling and pH. There was difference (P>0.05 for moisture, ashes and crude protein among glycerin levels. Bulls fed 12% glycerin present the highest (P<0.03 total lipids on LM. The percentage of saturated fatty acids (SFA, monounsaturated acids (MUFA, polyunsaturated acids (PUFA, n-6 and n-3 fatty acids and PUFA/SFA and n-6:n-3 ratios of the LM were similar among the diets. In conclusion, glycerin level did not affect the animal performance and carcass characteristics of Nellore bulls finished in feedlot.

  5. Correlation between hypoosmotic swelling test and breeding soundness evaluation of adult Nelore bulls

    Directory of Open Access Journals (Sweden)

    Tamires Miranda Neto

    2011-07-01

    Full Text Available This study aimed at evaluating the relationship between physical and morphological semen features with the hypoosmotic swelling (HOS test in raw semen of adult Nelore bulls classified as sound and unsound for breeding. Two hundred and six Nelore bulls aging from 3-10 years old were subjected to breeding soundness examination. After physical and morphological semen examination, HOS test was done. After the breeding soundness examination, 94.2% of the bulls were classified as sound for breeding. There was no difference between the average scrotal circumference of bulls classified as sound and unsound for breeding (P>0.05, but there was difference between all semen physical and morphological aspects of bulls classified as sound and unsound for breeding (P>0.05, but there was no difference in the mean percentage of reactive spermatozoa to HOS test results both for sound (38.4±17.9 and unsound animals (39.5±16.4; P>0.05, with no Pearson correlation between the HOS test and variables. According to these results HOS test can not be used alone to predict the reproductive potential of adult Nelore bulls.

  6. Rainbow Trout Haematology Coinciding with Metabolic Requirement

    Directory of Open Access Journals (Sweden)

    Ghulam Nabi LONE

    2012-12-01

    Full Text Available Rainbow trout (Onchorhynchus mykiss are an important aquaculture species yet there are few diagnostic tools available to assess their health. There is little published information regarding age-related changes in blood values of juvenile fish. It is important to evaluate juvenile fish, as this is the time they are raised in aquaculture settings. Determining age-related changes in the blood values of fishes would further develop clinical pathology as a diagnostic tool, enhancing both fish medicine and the aquaculture industry. The results of standard hematology and clinical chemistry analysis were evaluated in juvenile rainbow trout at 4, 6, 9, 15 and 19 months of age. Values for PCV and RBC indices were significantly lower, and plasma protein concentration was significantly higher in younger fish. Total WBC and lymphocyte counts were significantly higher in fish at 6 and 9 months of age, while neutrophil and monocyte counts were higher at 6, 9 and 15 months. Eosinophil counts were significantly higher in 9 month old fish. The majority of hematologic values fell within previously established reference intervals, indicating that only slight modification to the intervals is necessary for evaluating hematologic results of rainbow trout at different ages. The following analytes deviated sufficiently from adult reference intervals to warrant separate reference values: plasma protein concentration at 4 months, WBC and lymphocyte counts at 15 and 19 months, and thrombocyte-like-cells at 9 months of age. Values for most biochemical analytes were significantly different among age groups except for creatinine and potassium concentrations. Comparisons with reference intervals were not made for biochemical analytes, because established reference intervals were not available.

  7. Comparison of the Baird-Parker agar and 3M Petrifilm Staph Express Count plate methods for enumeration of Staphylococcus aureus in naturally and artificially contaminated foods.

    Science.gov (United States)

    Ingham, Steven C; Becker, Katie L; Fanslau, Melody A

    2003-11-01

    The recently developed 3M Petrifilm Staph Express Count plate (PFSE) method was compared with the U.S. Food and Drug Administration Bacteriological Analytical Manual's Baird-Parker agar spread plate (B-P) method for enumeration of Staphylococcus aureus in naturally contaminated, mechanically separated poultry (MSP; n = 92) and raw milk (n = 12). In addition, mozzarella and Parmesan cheeses and hot-smoked rainbow trout and chub were surface inoculated with a three-strain mixture of S. aureus, stored at 5 degrees C, and periodically analyzed with both methods for numbers of S. aureus. For naturally contaminated raw milk and MSP samples, the PFSE method yielded counts that were not significantly different (P > 0.05) from counts obtained using the B-P method. From raw milk and MSP samples, 60% (21 of 35) and 55% (124 of 226), respectively, of confirmed (DNAse-positive) isolates from PFSE plates were identified by further testing as S. aureus. Corresponding S. aureus identification rates for isolates forming typical colonies on B-P plates were 53% (19 of 36) and 50% (125 of 248). For both methods, other staphylococci composed the vast majority of tested isolates that were not identified as S. aureus. For inoculated hot-smoked fish, S. aureus counts from the PFSE method were not significantly different from counts from the B-P method. Compared to the B-P method, significantly lower numbers of inoculated S. aureus were recovered using the PFSE method in analyses of mozzarella cheese stored 28 and 42 days at 4 degrees C. The PFSE and B-P methods were not significantly different for inoculated cheeses at all other sampling times. DNAse-positive isolates from PFSE analyses of inoculated cheeses and smoked fish were identified as S. aureus 98% (51 of 52) and 86% (36 of 42) of the time, respectively, as compared with 100% (58 of 58) and 95% (40 of 42) of the time for typical B-P isolates. Overall, the PFSE and B-P methods appeared to perform similarly in enumeration of S

  8. An obscure disease of rainbow trout

    Science.gov (United States)

    Rucker, R.R.; Yasutake, W.T.; Wedemeyer, G.

    1970-01-01

    An annul mortality among Rainbow Trout (Salmo gairdneri) has plagued the Shelton Hatchery of the Washington State Department of Game for the last several years. No infectious agent could be isolated from the moribund fish, but histopathologica1 changes in the liver of 1-month-old fish suggested the presence of a toxic substance. Scoliosis in 3-month-old fish suggested a possible deficiency in vitamin C. With this background in mind, we designed studies to determine the nature and source of possible toxicants and the role of vitamin C deficiency in the etiology of this disease.

  9. Diel movement of brown trout in a southern Appalachian River

    Science.gov (United States)

    Bunnell, D.B., Jr.; Isely, J.J.; Burrell, K.H.; Van Lear, D. H.

    1998-01-01

    Radio telemetry was used to monitor the diel movement of 22 brown trout Salmo trutta (268-446 mm in total length, TL) in the Chattooga River watershed. Forty-seven diel tracks, locating individuals once per hour for 24 consecutive hours, were collected for four consecutive seasons. High variability in movement both within and among individual brown trout resulted in similar seasonal means in total distance moved, diel range, and displacement. The majority of fish moved a total distance of less than 80 m within a diel range of less than 80 m and had a displacement of less than 10 m. Brown trout were more likely to occur in pool habitat independent of season or period of the day. Hourly movement patterns differed among seasons. During the winter and fall, trout moved only around sunrise; during the spring, they moved around sunrise, sunset, and intermittently throughout the night. Large brown trout (>375 mm, TL) were found to move greater total distances and establish wider diel ranges than small brown trout. Overall, most brown trout exhibited restricted diel movement within a single riffle-pool or run-pool sequence.

  10. Reevaluation of lake trout and lake whitefish bioenergetics models

    Science.gov (United States)

    Madenjian, Charles P.; Pothoven, Steve A.; Kao, Yu-Chun

    2013-01-01

    Using a corrected algorithm for balancing the energy budget, we reevaluated the Wisconsin bioenergetics model for lake trout (Salvelinus namaycush) in the laboratory and for lake whitefish (Coregonus clupeaformis) in the laboratory and in the field. For lake trout, results showed that the bioenergetics model slightly overestimated food consumption by the lake trout when they were fed low and intermediate rations, whereas the model predicted food consumption by lake trout fed ad libitum without any detectable bias. The slight bias in model predictions for lake trout on restricted rations may have been an artifact of the feeding schedule for these fish, and we would therefore recommend application of the Wisconsin lake trout bioenergetics model to lake trout populations in the field without any revisions to the model. Use of the Wisconsin bioenergetics model for coregonids resulted in overestimation of food consumption by lake whitefish both in the laboratory and in the field by between 20 and 30%, on average. This overestimation of food consumption was most likely due to overestimation of respiration rate. We therefore adjusted the respiration component of the bioenergetics model to obtain a good fit to the observed consumption in our laboratory tanks. The adjusted model predicted the consumption in the laboratory and the field without any detectable bias. Until a detailed lake whitefish respiration study can be conducted, we recommend application of our adjusted version of the Wisconsin generalized coregonid bioenergetics model to lake whitefish populations in the field.

  11. Use of Bayesian Inference to Correlate In Vitro Embryo Production and In Vivo Fertility in Zebu Bulls

    Science.gov (United States)

    Sudano, Mateus José; Crespilho, André Maciel; Fernandes, Claudia Barbosa; Junior, Alicio Martins; Papa, Frederico Ozanam; Rodrigues, Josemar; Machado, Rui; Landim-Alvarenga, Fernanda Da Cruz

    2011-01-01

    The objective of this experiment was to test in vitro embryo production (IVP) as a tool to estimate fertility performance in zebu bulls using Bayesian inference statistics. Oocytes were matured and fertilized in vitro using sperm cells from three different Zebu bulls (V, T, and G). The three bulls presented similar results with regard to pronuclear formation and blastocyst formation rates. However, the cleavage rates were different between bulls. The estimated conception rates based on combined data of cleavage and blastocyst formation were very similar to the true conception rates observed for the same bulls after a fixed-time artificial insemination program. Moreover, even when we used cleavage rate data only or blastocyst formation data only, the estimated conception rates were still close to the true conception rates. We conclude that Bayesian inference is an effective statistical procedure to estimate in vivo bull fertility using data from IVP. PMID:21547211

  12. An Immunological Assay for Detection and Enumeration of Thermophilic Biomining Microorganisms

    OpenAIRE

    Amaro, Ana M.; Hallberg, Kevin B.; Lindström, E. Börje; Jerez, Carlos A.

    1994-01-01

    A specific, fast, and sensitive nonradioactive immunobinding assay for the detection and enumeration of the moderate thermophile Thiobacillus caldus and the thermophilic archaeon Sulfolobus acidocaldarius was developed. It employs enhanced chemiluminescence or peroxidase-conjugated immunoglobulins in a dot or slot blotting system and is very convenient for monitoring thermophilic bioleaching microorganisms in effluents from industrial bioleaching processes.

  13. A biclustering algorithm based on a Bicluster Enumeration Tree: application to DNA microarray data

    Directory of Open Access Journals (Sweden)

    Ayadi Wassim

    2009-12-01

    Full Text Available Abstract Background In a number of domains, like in DNA microarray data analysis, we need to cluster simultaneously rows (genes and columns (conditions of a data matrix to identify groups of rows coherent with groups of columns. This kind of clustering is called biclustering. Biclustering algorithms are extensively used in DNA microarray data analysis. More effective biclustering algorithms are highly desirable and needed. Methods We introduce BiMine, a new enumeration algorithm for biclustering of DNA microarray data. The proposed algorithm is based on three original features. First, BiMine relies on a new evaluation function called Average Spearman's rho (ASR. Second, BiMine uses a new tree structure, called Bicluster Enumeration Tree (BET, to represent the different biclusters discovered during the enumeration process. Third, to avoid the combinatorial explosion of the search tree, BiMine introduces a parametric rule that allows the enumeration process to cut tree branches that cannot lead to good biclusters. Results The performance of the proposed algorithm is assessed using both synthetic and real DNA microarray data. The experimental results show that BiMine competes well with several other biclustering methods. Moreover, we test the biological significance using a gene annotation web-tool to show that our proposed method is able to produce biologically relevant biclusters. The software is available upon request from the authors to academic users.

  14. Comparison of Selective Campylobacter Media for Detection and Enumeration of Naturally Occurring Campylobacter spp. on Poultry

    Science.gov (United States)

    Campylobacter spp. are among the most common cause of bacterial foodborne diarrheal illness; poultry has been linked as a primary source of contamination. Detection and enumeration of low numbers of naturally occurring Campylobacter spp. on poultry is difficult due to the presence of competing micro...

  15. Enumeration versus Multiple Object Tracking: The Case of Action Video Game Players

    Science.gov (United States)

    Green, C. S.; Bavelier, D.

    2006-01-01

    Here, we demonstrate that action video game play enhances subjects' ability in two tasks thought to indicate the number of items that can be apprehended. Using an enumeration task, in which participants have to determine the number of quickly flashed squares, accuracy measures showed a near ceiling performance for low numerosities and a sharp drop…

  16. An immunological assay for detection and enumeration of thermophilic biomining microorganisms.

    Science.gov (United States)

    Amaro, A M; Hallberg, K B; Lindström, E B; Jerez, C A

    1994-09-01

    A specific, fast, and sensitive nonradioactive immunobinding assay for the detection and enumeration of the moderate thermophile Thiobacillus caldus and the thermophilic archaeon Sulfolobus acidocaldarius was developed. It employs enhanced chemiluminescence or peroxidase-conjugated immunoglobulins in a dot or slot blotting system and is very convenient for monitoring thermophilic bioleaching microorganisms in effluents from industrial bioleaching processes. PMID:16349398

  17. Evaluation of Agar Plates for Direct Enumeration of Campylobacter spp. from Poultry Carcass Rinses

    OpenAIRE

    Oyarzabal, Omar A; Kenneth S. Macklin; Barbaree, James M.; Miller, Robert S.

    2005-01-01

    Campy-Cefex, a modification of Campy-Cefex, modified charcoal cefoperazone deoxycholate (mCCDA), Karmali, CAMPY, and Campy-Line agars were evaluated for their efficiency to isolate and enumerate Campylobacter spp. from poultry carcass rinses. Campy-Cefex and its modification produced the best results but were statistically similar to CAMPY, mCCDA, and Karmali.

  18. Sample handling factors affecting the enumeration of lactobacilli and cellulolytic bacteria in equine feces

    Science.gov (United States)

    The objectives were to compare media types and evaluate the effects of fecal storage time and temperature on the enumeration of cellulolytic bacteria and lactobacilli from horses. Fecal samples were collected from horses (n = 3) and transported to the lab (CO2, 37 ºC, 0.5 h). The samples were assign...

  19. BACTERIOLOGICAL PROPERTIES OF MARINE WATER IN ADRIATIC FISH FARMS: ENUMERATION OF HETEROTROPHIC BACTERIA

    Directory of Open Access Journals (Sweden)

    Emin Teskeredžić

    2012-12-01

    Full Text Available Aquaculture is currently one of the fastest growing food production sectors in the world. Increase in nutrients and organic wastes lead to general deterioration of water quality. The problem of water quality is associated with both physical and chemical factors, as well as microbiological water quality. Heterotrophic bacteria play an important role in the process of decomposition of organic matter in water environment and indicate eutrophication process. Here we present our experience and knowledge on bacterial properties of marine water in the Adriatic fish farms with European sea bass (Dicentrarchus labrax L., 1758, with an emphasis on enumeration of heterotrophic bacteria in marine water. We applied two temperatures of incubation, as well as two methods for enumeration of heterotrophic bacteria: substrate SimPlate® test and spread plate method on conventional artificial media (Marine agar and Tryptic Soy agar with added NaCl. The results of analysis of bacteriological properties of marine water in the Adriatic fish farms showed that enumeration of heterotrophic bacteria in marine water depends on the applied incubation temperature and media for enumeration. At the same time, the incubation temperature of 22C favours more intense growth of marine heterotrophic bacteria, whereas a SimPlate test gives higher values of heterotrophic bacteria. Volatile values of heterotrophic bacteria during this research indicate a possible deterioration of microbiological water quality in the Adriatic fish farms and a need for regular monitoring of marine water quality.

  20. Comparison of Selected Methods for the Enumeration of Fecal Coliforms and Escherichia coli in Shellfish

    OpenAIRE

    Grabow, W. O. K.; De Villiers, J C; Schildhauer, C. I.

    1992-01-01

    In a comparison of five selected methods for the enumeration of fecal coliforms and Escherichia coli in naturally contaminated and sewage-seeded mussels (Choromytilus spp.) and oysters (Ostrea spp.), a spread-plate procedure with mFC agar without rosolic acid and preincubation proved the method of choice for routine quality assessment.

  1. Comparison of selective media for detection and enumeration of naturally occurring Campylobacter spp. on poultry

    Science.gov (United States)

    Introduction: Campylobacter spp. are known to be among the most common bacteria to cause diarrheal illness, with poultry being linked as the primary source of contamination related to foodborne illness. Enumeration and detection of low numbers of naturally occurring Campylobacter spp. on poultry pro...

  2. Identification of differentially expressed genes of brown trout (Salmo trutta) and rainbow trout (Oncorhynchus mykiss) in response to Tetracapsuloides bryosalmonae (Myxozoa)

    OpenAIRE

    Kumar, Gokhlesh; Abd-Elfattah, Ahmed; El-Matbouli, Mansour

    2015-01-01

    Tetracapsuloides bryosalmonae Canning et al., 1999 (Myxozoa) is the causative agent of proliferative kidney disease in various species of salmonids in Europe and North America. We have shown previously that the development and distribution of the European strain of T. bryosalmonae differs in the kidney of brown trout (Salmo trutta) Linnaeus, 1758 and rainbow trout (Oncorhynchus mykiss) Walbaum, 1792, and that intra-luminal sporogonic stages were found in brown trout but not in rainbow trout. ...

  3. Exposure of prepubertal beef bulls to cycling females does not enhance sexual development.

    Science.gov (United States)

    Miller, N A; Fike, K E

    2014-08-01

    The objective of this study was to determine whether continuous, long-term, fenceline exposure of prepubertal beef bulls to cycling beef females reduced age at puberty and influenced the percentage of bulls that passed an initial breeding soundness examination (BSE). Bulls (Angus, n = 37; Simmental, n = 22; Hereford, n = 10; Simmental × Angus, n = 8) at an average age of 202 ± 21.5 days were given either continuous fenceline and visual exposure to cycling females (exposed, n = 41) or no exposure (control, n = 36). Estrus was induced in cycling beef females so at least three females were in standing estrus each week during the 182 days of exposure to bulls. Scrotal circumference (SC), body weight, and blood samples were collected every 28 days. When bulls had SC of 26 cm or more, semen samples were obtained monthly via electroejaculation until puberty was achieved (≥50 × 10(6) sperm/mL with at least 10% progressive motility). Behavioral observations were conducted twice monthly: once when females were in estrus and once during diestrus. Homosexual mounting, flehmen responses, and number of times near penned females were recorded for each observation period. Breeding soundness examinations were conducted when the average age of bulls was 364 ± 21.5 days. Normal sperm morphology of at least 70% and sperm motility of at least 30% were required to pass the BSE. Age, body weight, and SC at puberty did not differ between exposed and control bulls (320 ± 28 and 311 ± 29 days; 466.2 ± 12.2 and 437.7 ± 13.5 kg; and 34.4 ± 2.5 and 34.9 ± 2.5 cm, respectively). Percentage of bulls passing their initial BSE did not differ between treatments (exposed, 87.8%; control, 75.0%). Treatment, month, and female estrous stage interacted (P = 0.05) to affect the number of mount attempts and flehmen responses. Exposed bulls entered the cow area more times (P < 0.001) during estrus than diestrus in Months 1, 2, and 3. We concluded that bulls given continuous, long

  4. Introduced brown trout alter native acanthocephalan infections in native fish.

    Science.gov (United States)

    Paterson, Rachel A; Townsend, Colin R; Poulin, Robert; Tompkins, Daniel M

    2011-09-01

    1. Native parasite acquisition provides introduced species with the potential to modify native host-parasite dynamics by acting as parasite reservoirs (with the 'spillback' of infection increasing the parasite burdens of native hosts) or sinks (with the 'dilution' of infection decreasing the parasite burdens of native hosts) of infection. 2. In New Zealand, negative correlations between the presence of introduced brown trout (Salmo trutta) and native parasite burdens of the native roundhead galaxias (Galaxias anomalus) have been observed, suggesting that parasite dilution is occurring. 3. We used a multiple-scale approach combining field observations, experimental infections and dynamic population modelling to investigate whether native Acanthocephalus galaxii acquisition by brown trout alters host-parasite dynamics in native roundhead galaxias. 4. Field observations demonstrated higher infection intensity in introduced trout than in native galaxias, but only small, immature A. galaxii were present in trout. Experimental infections also demonstrated that A. galaxii does not mature in trout, although parasite establishment and initial growth were similar in the two hosts. Taken together, these results support the hypothesis that trout may serve as an infection sink for the native parasite. 5. However, dynamic population modelling predicts that A. galaxii infections in native galaxias should at most only be slightly reduced by dilution in the presence of trout. Rather, model exploration indicates parasite densities in galaxias are highly sensitive to galaxias predation on infected amphipods, and to relative abundances of galaxias and trout. Hence, trout presence may instead reduce parasite burdens in galaxias by either reducing galaxias density or by altering galaxias foraging behaviour. PMID:21426342

  5. Seasonal movement of brown trout in a southern appalachian river

    Science.gov (United States)

    Burrell, K.H.; Isely, J.J.; Bunnell, D.B., Jr.; Van Lear, D. H.; Dolloff, C.A.

    2000-01-01

    Radio telemetry was used to evaluate the seasonal movement, activity level, and home range size of adult brown trout Salmo trutta in the Chattooga River watershed, one of the southernmost coldwater stream systems in the United States. In all, 27 adult brown trout (262-452 mm total length) were successfully monitored from 16 November 1995 to 15 December 1996. During the day, adult brown trout were consistently found in small, well-established home ranges of less than 270 m in stream length. However, 8 of a possible 18 study fish made spawning migrations during a 2-week period in November 1996. The daytime locations of individual fish were restricted to a single pool or riffle-pool combination, and fish were routinely found in the same location over multiple sampling periods. Maximum upstream movement during spawning was 7.65 km, indicating that brown trout in the Chattooga River have the ability to move long distances. Spawning brown trout returned to their prespawning locations within a few days after spawning. Brown trout maintained larger home ranges in winter than in other seasons. When spawning-related movement was deleted from the analysis, brown trout moved more on a weekly basis in fall than in summer. Brown trout were more active in fall and winter than in spring and summer. Apart from spawning migrations, displacement from established home ranges was not observed for any fish in the study. Although summer water temperatures reached and exceeded reported upper thermal-preference levels, brown trout did not move to thermal refuge areas in nearby tributaries during the stressful summer periods.

  6. Improved assay for measuring heparin binding to bull sperm

    International Nuclear Information System (INIS)

    The binding of heparin to sperm has been used to study capacitation and to rank relative fertility of bulls. Previous binding assays were laborious, used 107 sperm per assay point, and required large amounts of radiolabeled heparin. A modified heparin-binding assay is described that used only 5 x 104 cells per incubation well and required reduced amounts of [3H] heparin. The assay was performed in 96-well Millititer plates, enabling easy incubation and filtering. Dissociation constants and concentrations of binding sites did not differ if analyzed by Scatchard plots, Woolf plots, or by log-logit transformed weighted nonlinear least squares regression, except in the case of outliers. In such cases, Scatchard analysis was more sensitive to outliers. Nonspecific binding was insignificant using nonlinear logistic fit regression and a proportion graph. The effects were tested of multiple free-thawing of sperm in either a commercial egg yolk extender, 40 mM Tris buffer with 8% glycerol, or 40 mM Tris buffer without glycerol. Freeze-thawing in extender did not affect the dissociation constant or the concentration of binding sites. However, freeze-thawing three times in 40 mM Tris reduced the concentration of binding sites and lowered the dissociation constant (raised the affinity). The inclusion of glycerol in the 40 mM Tris did not significantly affect the estimated dissociation constant or the concentration of binding sites as compared to 40 mM Tris without glycerol

  7. Behaviour and meat quality of Podolian young bulls

    Directory of Open Access Journals (Sweden)

    Fabio Napolitano

    2010-01-01

    Full Text Available From April to August 2008, twelve Podolian subjects, aged about 11 months at the beginning of the experimental period, were used to evaluate the effect of rearing system (Confined vs. Freerange and season (spring vs. summer on their behaviour and meat quality. Nine sessions of behavioural observations were performed. During a 6-h period, the behaviour of a focal animal, was continuously monitored. In each session a different animal was chosen. All the animals were slaughtered at 18 months of age. Walking (P<0.001 and standing (P<0.05 were lower in summer, whereas inactivity was higher (P<0.05. Free-range bulls spent more time walking (P<0.05, feeding (P<0.001 and standing (P<0.01 and showed a lower number of agonistic (P<0.05 and non-agonistic social interaction than confined animals (P<0.01. Self- and allo-grooming were not affected by rearing system, whereas season influenced self-grooming with higher values in spring (P<0.05. Confined animals showed higher final weights (P<0.05 and a lighter meat (P<0.05, whereas no differences between groups were observed for average daily gains, carcass yield, water holding capacity and a* and b* indexes. Confinement markedly affected the behaviour of the animals, whereas free-ranging had only minor negative effects on meat lightness.

  8. Vaccination against GnRH may suppress aggressive behaviour and musth in African elephant (Loxodonta africana) bulls - a pilot study

    OpenAIRE

    H. M. De Nys; H.J. Bertschinger; J. A. Turkstra; B. Colenbrander; Palme, R; A. M. Human

    2010-01-01

    Aggressive behaviour and musth are constant problems in captive and sometimes in free-ranging African elephant bulls. Aggressive bulls are difficult and musth bulls almost impossible to manage without severely restricting their movement either by leg-chaining or using tranquillisers. This study investigated the relationship between faecal androgen metabolites (FAM) and faecal cortisol metabolites (FCM) concentrations and aggressive behaviour and tested a GnRH vaccine as a means of down-regula...

  9. Analysis of Beta-Lactoglobuline Gene (LGB) Polymorphism in Different Breeds of Bulls by High Resolution Melting

    OpenAIRE

    Martina Miluchová; Anna Trakovická; Michal Gábor

    2012-01-01

    The goal of the paper was to identify  - lactoglobulin gene polymorphism in bulls. The  - lactoglobulin (LGB) is expressed in milk and is important in the evaluation of milk production potential and butterfat and protein content. LGB is localized on bovine chromosome 11. The AA genotype of LGB is associated with higher milk yield, the BB genotype with higher fat and casein content and is more desirable for cheese making. The material involved 46 bulls (Slovak spotted breed – 41 bulls, Pinzg...

  10. Sensitivity of Trout to Chronic Acute Exposure to Selenium

    DEFF Research Database (Denmark)

    Nielsen, Gunnar Gissel; Nielsen, M. Gissel

    1978-01-01

    Trout were exposed to selenite (Na2SeO3) solutions of varying concentrations (0.1-100 ppm Se) for periods of up to 4 wk. A chronic exposure to 0.1 ppm Se or less is non-lethal to trout. Lethality at higher concentrations depends on the length of exposure. Trout that survive for 10 days in tap......-water after contamination will not die as a result of Se toxicity and can safely be used for human consumption....

  11. Vertebral column deformities in farmed rainbow trout ( Oncorhynchus mykiss )

    DEFF Research Database (Denmark)

    Madsen, Lone; Dalsgaard, Inger

    1999-01-01

    Farmed rainbow trout (Oncorhynchus mykiss) were fed diets with either different levels of vitamin C, or diets enriched with glucan or chitin, from feeding start and 6 months onwards. At an average weight of 100 g, the trout were X-rayed to determine the deformity level. The investigations showed...... deformities (4.8%). In all groups examined, the deformities were spread over the whole vertebral column. The deformities in the group fed the low vitamin C diet were more severe than those found in the other groups. An outbreak of the disease rainbow trout fry syndrome (RTFS) caused by the bacterium...

  12. ERM booster vaccination of Rainbow trout using diluted bacterin

    DEFF Research Database (Denmark)

    Schmidt, Jacob Günther; Henriksen, Niels H.; Buchmann, Kurt

    2016-01-01

    Enteric Red Mouth Disease ERM caused by Yersinia ruckeri infection is associated with morbidity and mortality in salmonid farming but immersion vaccination of fry may confer some protection for a number of months. Revaccination of rainbow trout, even by use of diluted ERM immersion vaccine, can......:10) in April 2015 was followed 3 months later (July 2015) by 1 h bathing of rainbow trout in bacterin (diluted 1:650 or 1:1700) in order to evaluate if this time saving vaccination methodology can improve immunity and protection. Trout were subjected in farms to natural Y. ruckeri exposure in June and...

  13. Acoustic estimates of abundance and distribution of spawning lake trout on Sheboygan Reef in Lake Michigan

    Science.gov (United States)

    Warner, D.M.; Claramunt, R.M.; Janssen, J.; Jude, D.J.; Wattrus, N.

    2009-01-01

    Efforts to restore self-sustaining lake trout (Salvelinus namaycush) populations in the Laurentian Great Lakes have had widespread success in Lake Superior; but in other Great Lakes, populations of lake trout are maintained by stocking. Recruitment bottlenecks may be present at a number of stages of the reproduction process. To study eggs and fry, it is necessary to identify spawning locations, which is difficult in deep water. Acoustic sampling can be used to rapidly locate aggregations of fish (like spawning lake trout), describe their distribution, and estimate their abundance. To assess these capabilities for application to lake trout, we conducted an acoustic survey covering 22 km2 at Sheboygan Reef, a deep reef (trout, that lake trout were 1–2 m above bottom, and that spawning took place over specific habitat. Lake trout density exhibited a high degree of spatial structure (autocorrelation) up to a range of ~190 m, and highest lake trout and egg densities occurred over rough substrates (rubble and cobble) at the shallowest depths sampled (36–42 m). Mean lake trout density in the area surveyed (~2190 ha) was 5.8 fish/ha and the area surveyed contained an estimated 9500–16,000 large lake trout. Spatial aggregation in lake trout densities, similarity of depths and substrates at which high lake trout and egg densities occurred, and relatively low uncertainty in the lake trout density estimate indicate that acoustic sampling can be a useful complement to other sampling tools used in lake trout restoration research.

  14. Breeding soundness evaluation of bulls by semen analysis, testicular fine needle aspiration cytology and trans-scrotal ultrasonography

    Directory of Open Access Journals (Sweden)

    Chapwanya A

    2008-05-01

    Full Text Available Abstract The aim of this study was to evaluate the usefulness of trans-scrotal ultrasonography and testicular fine needle aspiration cytology in assessing bulls for breeding suitability. These two techniques were also compared with semen analysis. Bulls presented for breeding soundness evaluation were assessed using all three techniques. The findings of each technique were compared. There was agreement in classification of fertile bulls using all three techniques, suggesting that the combined use of these techniques enhances routine breeding soundness examination. Use of the three techniques also enhances detailed investigation of suspected sub-fertile bulls while accurately identifying testicular cause(s of sire sub-fertility.

  15. Natural or artificial? Habitat-use by the bull shark, Carcharhinus leucas.

    Directory of Open Access Journals (Sweden)

    Jonathan M Werry

    Full Text Available BACKGROUND: Despite accelerated global population declines due to targeted and illegal fishing pressure for many top-level shark species, the impacts of coastal habitat modification have been largely overlooked. We present the first direct comparison of the use of natural versus artificial habitats for the bull shark, Carcharhinus leucas, an IUCN 'Near-threatened' species--one of the few truly euryhaline sharks that utilises natural rivers and estuaries as nursery grounds before migrating offshore as adults. Understanding the value of alternate artificial coastal habitats to the lifecycle of the bull shark is crucial for determining the impact of coastal development on this threatened but potentially dangerous species. METHODOLOGY/FINDINGS: We used longline surveys and long-term passive acoustic tracking of neonate and juvenile bull sharks to determine the ontogenetic value of natural and artificial habitats to bull sharks associated with the Nerang River and adjoining canals on the Gold Coast, Australia. Long-term movements of tagged sharks suggested a preference for the natural river over artificial habitat (canals. Neonates and juveniles spent the majority of their time in the upper tidal reaches of the Nerang River and undertook excursions into adjoining canals. Larger bull sharks ranged further and frequented the canals closer to the river mouth. CONCLUSIONS/SIGNIFICANCE: Our work suggests with increased destruction of natural habitats, artificial coastal habitat may become increasingly important to large juvenile bull sharks with associated risk of attack on humans. In this system, neonate and juvenile bull sharks utilised the natural and artificial habitats, but the latter was not the preferred habitat of neonates. The upper reaches of tidal rivers, often under significant modification pressure, serve as nursery sites for neonates. Analogous studies are needed in similar systems elsewhere to assess the spatial and temporal generality of

  16. Spawning Behaviour and the Softmouth Trout Dilemma

    Directory of Open Access Journals (Sweden)

    Esteve Manu

    2014-07-01

    Full Text Available Morphological, ecological and molecular data sets do not completely agree on the phylogenetic placement of the softmouth trout, Salmo (Salmothymus obtusirostris (Heckel. Molecules posit that softmouths are closely related to brown trout, Salmo trutta L. while some morphological, ecological and life history traits place them in the most basal position of the Salmoninae subfamily between grayling (Thymallus and lenok (Brachymystax. Here we add an additional source of data, behavioural characters based on the first reported observations of softmouth spawning. During spawning softmouth females present three important behaviours not found in the other Salmo members: they continually abandon their nests, rarely staying on them for periods over nine minutes; they expel different batches of eggs at the same nest at intervals of several minutes; and they do not cover their eggs immediately after spawning. These three behaviours are intriguing for two reasons: 1 they are possible homologous to behaviours found in grayling females; 2 when coupled to the nest digging behaviour-widespread in all the salmonines, including softmouths, they seem to be mal-adaptive.

  17. Nucléation, ascension et éclatement d'une bulle de champagne

    Science.gov (United States)

    Liger-Belair, G.

    2006-03-01

    People have long been fascinated by bubbles and foams dynamics, and since the pioneering work of Leonardo da Vinci in the early 16th century, this subject has generated a huge bibliography. However, only quite recently, much interest was devoted to bubbles in Champagne wines and carbonated beverages. Since the time of the benedictine monk dom Pierre Perignon (1638-1715), champagne is the wine of celebration. This fame is largely linked to the elegance of its effervescence and foaming properties. In this book, the latest results about the chemical physics behind the bubbling properties of Champagne and sparkling wines are collected and fully illustrated. The first chapter is devoted to the history of champagne and to a presentation of the tools of the physical chemistry of interfaces needed for a whole comprehension of the book. Then, the three main steps of a fleeting champagne bubble's life are presented in chronological order, that is, the bubble nucleation on the glass wall (Chap.2), the bubble ascent and growth through the liquid matrix (Chap.3), and the bursting of bubbles at the liquid surface (Chap.4), which constitutes the most intriguing, functional, and visually appealing step. L'objectif général de ce travail consacré à l'étude des processus physicochimiques liés à l'effervescence des vins de Champagne était de décortiquer les différentes étapes de la vie d'une bulle de champagne en conditions réelles de consommation, dans une flûte. Nous résumons ci-après les principaux résultats obtenus pour chacune des étapes de la vie de la bulle, depuis sa naissance sur les parois d'une flûte, jusqu'à son éclatement en surface. Nucléation À l'aide d'une caméra rapide munie d'un objectif de microscope, nous avons pu mettre à mal une idée largement répandue. Ce ne sont pas les anfractuosités de la surface du verre ou de la flûte qui sont responsable de la nucléation hétérogène des bulles, mais des particules adsorbées sur les parois du

  18. Yellowstone Cutthroat Trout Distribution, Pacific Northwest (updated March, 2006)

    Data.gov (United States)

    Pacific States Marine Fisheries Commission — This dataset is a record of fish distribution and activity for YELLOWSTONE CUTTHROAT TROUT contained in the StreamNet database. This feature class was created based...

  19. Rainbow Trout Distribution, Pacific Northwest (updated March, 2006)

    Data.gov (United States)

    Pacific States Marine Fisheries Commission — This dataset is a record of fish distribution and activity for RAINBOW TROUT contained in the StreamNet database. This feature class was created based on linear...

  20. Redband Trout Distribution, Pacific Northwest (updated March, 2006)

    Data.gov (United States)

    Pacific States Marine Fisheries Commission — This dataset is a record of fish distribution and activity for REDBAND TROUT contained in the StreamNet database. This feature class was created based on linear...

  1. Lahontan Cutthroat Trout Distribution, Pacific Northwest (updated March, 2006)

    Data.gov (United States)

    Pacific States Marine Fisheries Commission — This dataset is a record of fish distribution and activity for LAHONTAN CUTTHROAT TROUT contained in the StreamNet database. This feature class was created based on...

  2. Brown Trout Distribution, Pacific Northwest (updated March, 2006)

    Data.gov (United States)

    Pacific States Marine Fisheries Commission — This dataset is a record of fish distribution and activity for BROWN TROUT contained in the StreamNet database. This feature class was created based on linear event...

  3. Westslope Cutthroat Trout Distribution, Pacific Northwest (updated March, 2006)

    Data.gov (United States)

    Pacific States Marine Fisheries Commission — This dataset is a record of fish distribution and activity for WESTSLOPE CUTTHROAT TROUT contained in the StreamNet database. This feature class was created based...

  4. Great Smoky Mountains National Park Brook Trout Genetics

    Data.gov (United States)

    National Park Service, Department of the Interior — Great Smoky Mountains National Park (GRSM) is committed to monitoring ecological and evolutionary functions and processes of park ecosystems. Brook trout...

  5. Environmental contaminants in brook trout from Aroostook National Wildlife Refuge

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — In June 2012, four brook trout (Salvelinus fontinalis) were collected by angling from Chapman Pond and East Loring Lake at Aroostook NWR in northeast Maine. Two...

  6. Species status assessment report for the Rio Grande cutthroat trout

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The Rio Grande cutthroat trout (Oncorhynchus clarkii virginalis) lives in high elevation, coldwater streams in New Mexico and southern Colorado. It is a subspecies...

  7. Brook Trout Distribution, Pacific Northwest (updated March, 2006)

    Data.gov (United States)

    Pacific States Marine Fisheries Commission — This dataset is a record of fish distribution and activity for BROOK TROUT contained in the StreamNet database. This feature class was created based on linear event...

  8. Effect of age on spermiogram of Holstein Friesian × Sahiwal crossbred bulls.

    Science.gov (United States)

    Mandal, D K; Kumar, M; Tyagi, S

    2010-04-01

    This study was conducted on 94 Frieswal (5/8 Holstein Friesian 3/8 Sahiwal) crossbred bulls of three different grades, categorized based on their semen freezability visualising Group 1 (consistently freezable semen producer bulls, N = 11), Group 2 (inconsistent freezable, N = 16) and Group 3 (Non freezable, N = 67). Each group was further divided into two classes that is young (up to 30 months) and adult (31 to 70 months) bulls depending upon their age. Sperm morphology was studied by using the eosin-nigrosin staining technique. Bulls age significantly (P stage (6.69 ± 0.64, 3.82 ± 0.32, 9.14 ± 0.64 and 19.66 ± 1.31, respectively). Significant reduction (P stage. In bulls of consistent freezing category, abnormal sperm heads significantly decreased from 4.40 ± 0.31% to 3.28 ± 0.02% on maturity. Similarly, in inconsistent freezing grade bulls sperm head abnormality (9.28 ± 0.75% to 5.13 ± 1.20%) and total abnormal sperm percent (24.89 ± 1.43 to 18.73 ± 3.40) was decreased over the age. On the contrary, in non-freezing category bulls' sperm morphology did not show significant (P > 0.05) improvement with age advancement, rather some abnormalities like long slender head, under developed/deformed head, abaxial implantation of mid piece, double mid piece, stump tail and distal protoplasmic droplets tend to increased significantly (P stage, where as, in poor quality (non-freezing) semen producer bulls neither the morphology nor the semen quality showed any improvement with maturity. It was recommended that crossbred bulls producing more than 25% morphologically abnormal sperms in young age (below 30 months) along with poor progressive motility (<50%) and low sperm concentration (<1000 million/ml) need immediate culling with out any expectation of further improvement in semen quality with age advancement. PMID:22444047

  9. Gene expression profiling of differentially expressed genes in bull testicle between different scrotal circumference using DDRT

    International Nuclear Information System (INIS)

    To identify tissue-specific expression gene in testicle of differential scrotal circumference bulls and analyze the function of the specific gene on the development of the bull's scrotum in this study. The DDRT-PCR and Reverse Northern Blot Analysis were used to identify tissue-specific expression genes in bulls with differential scrotal circumference. The experiment was designed sixty 6-month-old crossbreeds (Charolais with indigenous Fuzhou female). These were raised under the same age, cross generation, raising condition and management. When the feeding was over after 6 months, the scrotal circumferences of bulls were measured. Four bulls were selected and classified into two groups, and the difference of scrotal circumference is significant between the two groups (P < 0.01). A group was consisted of two bulls with larger scrotal circumference 26±2.5cm. The control group was two crossbreed bulls with smaller scrotal circumference 17±2.2 cm. When the scrotal circumferences were measured, the bulls were castrated by surgical operations. A piece of tissue (2 by 2 by 2 cm) was removed from the deeper area of the testis and stored in liquid nitrogen. A small section (0.5 by 0.5 by 0.5 cm) was used for total RNA extraction by using the TRIZOL reagent kit (GIBCO/BRL, Bethesda, MA, USA). The RNA was prepared for DDRT-PCR experiments and quantitative real-time PCR. The results were shown that six genes corresponded to genes of known or inferred function; either the bovine gene or the likely human orthologue and three genes or ESTs were unknown. Bos taurus similar to galactosidase, beta 1-like; Bos taurus similar to Kinesin heavy chain isoform 5C; Bos taurus similar to ankyrin repeat domain protein 15 isoform and Bos taurus ebd-P2 pseudogene were founded both highly expressed in bulls which had bigger scrotal circumference by qRT-PCR. Their functions may be involved with sperm maturation in the epididymis, sperm protection and preventing the ascent of microorganisms

  10. Comparison of biochemical parameters of rainbow trout (Oncorhynchus mykiss) reared in two different trout farms'

    Science.gov (United States)

    Karatas, Tayfun

    2016-04-01

    The aim of this study was to compare biochemical parameters of cultured rainbow trouts (Oncorhynchus mykiss, Walbaum, 1972) reared in two different trout farms' (Agri and Erzurum). The average weights of fish were 150±10gr for first station (Agri), 230±10gr for second station (Erzurum). Fishes used in research were randomly caught from pools, and fifteen pieces were used for each group. Fishes were fed with commercial trout feed with 45-50% crude protein twice a day. The levels of AST, ALT, LDL, total cholesterol and triglyceride in the second station (Erzurum) were found to be higher (p<0.05) than that of first station (Agri). Whereas, the levels of HDL in the second station (Erzurum) were found to be lower (p<0.05) than that of first station (Agri). Differences in the levels of total cholesterol and AST, ALT, HDL, LDL, triglyceride may be associated with size, sex, sexual maturity and environmental conditions (temperature, pH, hardness and dissolved oxygen).

  11. Food Intake and Feed Conversion Ratios in Abant Trout (Salmo trutta abanticus T., 1954) and Rainbow Trout (Oncorhynchus mykiss W., 1792) in Pond Culture

    OpenAIRE

    UYSAL, İrfan

    2002-01-01

    This study was carried out at DSI-Gölköy Fish Production Station in Bolu and lasted for 350 days. Food consumption (FC) and feed conversion ratios (FCR) in Abant and rainbow trout in pond culture were compared. Abant trout larvae obtained from eggs of wild Abant trout broodstocks in Lake Abant and rainbow trout larvae obtained from eggs of the cultured broodstocks in Gölköy Fish Production Station were used in this study. Trial I involved 4 groups (2 Abant and rainbow trout experimental gr...

  12. Comparison of the Growth Performance and Mortality in Abant Trout (Salmo trutta abanticus Tortonese, 1954) and Rainbow Trout (Oncorhynchus mykiss Walbaum, 1792) under Farming Conditions

    OpenAIRE

    UYSAL, İrfan

    2002-01-01

    This experiment was conducted between 15th February 2000 (day 1) and 31st January 2001 (day 350) at the DSI-Gölköy Fish Production Station, Bolu (Turkey). Abant trout larvae obtained from eggs of wild Abant trout broodstocks in Lake Abant and rainbow trout larvae obtained from eggs of the hatchery broodstocks in Gölköy Fish Production Station were used. Trials I and II involved eight groups (four Abant and rainbow trout experimental groups, and four Abant and rainbow trout parallel groups). A...

  13. Effects of trout bradykinin on the motility of the trout stomach and intestine: evidence for a receptor distinct from mammalian B1 and B2 subtypes

    OpenAIRE

    Jensen, Jorgen; J. Michael Conlon

    1997-01-01

    Trout bradykinin ([Arg0,Trp5,Leu8]-bradykinin; trout BK), recently isolated from kallikrein-treated trout plasma, produced sustained and concentration-dependent contractions of isolated longitudinal muscle from rainbow trout stomach (pD2=7.01±0.03) and proximal small intestine (pD2=7.37±0.07). The maximum responses were 85±2% (stomach) and 101±35% (intestine) of the corresponding responses to 10−5 M acetylcholine. Strips of circular smooth muscle from trout stomach and intestine did not contr...

  14. Eggs Incubation, Early Development and growth in Frys of Brown Trout (Salmo trutta macrostigma) and Black Sea Trout (Salmo trutta labrax)

    OpenAIRE

    Ahmet ALP; Erer, Mesut; KAMALAK, Adem

    2010-01-01

    Some of the embryonic development stages and growth of the frys of brown trout (Salmo trutta macrostigma) and Black Sea trout (Salmo trutta labrax) were examined. The first eye pigmentation in the brown trout eggs were realised on the 35 days (244 day-degree) at 7.23°C and 31 days (260 day-degree) at 8.21°C post fertilisation. First eye pigmentation of the Black Sea trout eggs were seen on day 25 (215 day-degree) at 8.21°C. Brown trout larvae were hatched on day 56 (387 day-degree) at 7.23°C ...

  15. Evaluation of bull prolificacy on commercial beef cattle ranches using DNA paternity analysis.

    Science.gov (United States)

    Van Eenennaam, A L; Weber, K L; Drake, D J

    2014-06-01

    SNP-based DNA testing was used to assign paternity to 5,052 calves conceived in natural service multisire breeding pastures from 3 commercial ranches in northern California representing 15 calf crops over 3 yr. Bulls present for 60 to 120 d at a 25:1 cow to bull ratio in both fall and spring breeding seasons in ∼40 ha or smaller fenced breeding pastures sired a highly variable (P breeding season) to 64 calves per bull per breeding season, with an average of 18.9 ± 13.1. There was little variation in Ncalf among ranches (P = 0.90), years (P = 0.96), and seasons (P = 0.94). Bulls varied widely (P breeding season was positively linearly related (P breeding seasons, explaining about 20% of the subsequent variation. Prolificacy was also positively linearly related (P heifers, with the genetics of those bulls siring an increased number of calves being disproportionately represented in the early-born replacement heifer pool. PMID:24753384

  16. Bull's-eye map of myocardial perfusion MR imaging. Comparison with SPECT

    International Nuclear Information System (INIS)

    When diagnosing heart disease, chest roentgenograms, ultrasonography, single-photon emission computed tomography (SPECT), and coronary arteriography are usually performed. Magnetic resonance (MR) imaging is not widely used for evaluating heart disease. Recent technological progress has allowed high quality images of the heart to be reliably obtained. A routine MR study taking about 30-40 minutes can provide a large amount of diagnostic information, such as cardiac structure, function, perfusion, and myocardial viability. The analysis software that can offer Bull's-eye maps from myocardial perfusion images has recently become commercially available. In this study, the characteristics of Bull's-eye mapping of MR imaging is compared with that of Bull's-eye mapping of SPECT using the same heart phantom. The difference in the image quality of the Bull's-eye maps was evaluated among the receiver coils of MR imaging. On Bull's-eye maps from both MR imaging and SPECT, decreased signal intensity was noted in the posterolateral wall. The degree of decrease in the signal of the MR imaging was more prominent than of SPECT. The decrease was severe for the general-purpose receive-only flexible (GPFLEX) coil, moderate for the cardiac and TORSO coil, and slight for the body coil. In the selection of a coil, it is necessary to take into consideration the trade-off between the distribution of signal intensity and the signal-to-noise ratio (SNR). (author)

  17. Beef quality traits of heifer in comparison with steer, bull and cow at various feeding environments.

    Science.gov (United States)

    Venkata Reddy, Bandugula; Sivakumar, Allur S; Jeong, Dawoon W; Woo, Yang-Byung; Park, Sang-June; Lee, So-Young; Byun, Ji-Yeon; Kim, Chang-Ho; Cho, Soo-Hyun; Hwang, Inho

    2015-01-01

    The present review has been focused largely on the sex type differences in beef quality among heifers, cows, steers and bulls in various feeding environments. Genetic groups, feeding systems and gender are the major factors that change carcass characteristics and fatty acid profiles of cattle. Studies identified that heifer beef has super characteristics in eating quality and a better healthy composition in fatty acids than steer, cow and bull. Diet influences the variation of fatty acid profile; particularly the level of polyunsaturated fatty acids (PUFA) interacts with breed and sex. Animals finished in pasture systems were reported to show better ratios of PUFA/ saturated fatty acids and n-6/n-3. Carcasses of roughage-fed beef are lighter and have less marbling and lower quality grades but have higher cutability than carcasses of grain-fed bulls. Heifers and cows are reported to deposit more fat than steers and bulls. Among males, lower production of testosterone by steers favors more fat thickness compared with bulls. Marbling greatly varies among cattle belonging to different sexes, and particularly, females have genetic makeup that efficiently controls deposition. The current review identified that heifers can be a premium beef brand, while steer beef currently take a large part of market share across the world. PMID:25236779

  18. Daughter performance based buffalo bull ranking for boosting milk production in Pakistan

    Directory of Open Access Journals (Sweden)

    A. Ghaffar

    2010-02-01

    Full Text Available The first lactation milk yield records of 2329 daughters of 180 bulls, (11 batches during 1983-2005 were used in this study. BLUP breeding values for male and female were computed using DFREML. The fixed effects like herd-year-season and batch number of bulls had significant effect on milk yield as determined by HARVEY Model-1. In addition to these fixed effects, age at first calving was included in the model as covariate to estimate the BLUP breeding values (EBV for milk yield. The year-wise least square means of milk yield for Nili Ravi buffaloes showed a sharp increase from 1984 to 1989 and then a significant yearly variation with the slight decrease in overall milk production under field conditions at private farmers door step. Among these candidate bulls 92 bulls were positive for milk yield EBV. The overall milk production was (Mean±S.E 2481.82±493.33 Kg. The heritability of milk yield was 0.15. There is wide variation over the years making the over all regression line (Y = - 146944 + 74.349X for milk yield negative. This emphasizes to review the policy of semen usage and production of candidate young bulls for future generations. Recently born male calves had better breeding values showing the positive regression line ( Y = 142.77 + 22.065X.

  19. Brown trout redd superimposition in relation to spawning habitat availability

    OpenAIRE

    Gortázar Rubial, Javier; Alonso González, Carlos; García de Jalón Lastra, Diego

    2012-01-01

    The relationship between redd superimposition and spawning habitat availability was investigated in the brown trout (Salmo trutta L.) population inhabiting the river Castril (Granada, Spain). Redd surveys were conducted in 24 river sections to estimate the rate of redd superimposition. Used and available microhabitat was evaluated to compute the suitable spawning habitat (SSH) for brown trout. After analysing the microhabitat characteristics positively selected by females, SSH was defined as ...

  20. Long-term brown trout populations responses to flow manipulation

    OpenAIRE

    SABATON C.; Souchon, Y.; Capra, H.; Gouraud, V.; LASCAUX J. M.; Tissot, L.

    2008-01-01

    Despite the many habitat simulations that have been undertaken around the world, not enough biological monitoring has been performed following flow manipulations. It is difficult, however, to refine flow management decisions without a better understanding of the links between amounts, durations and seasonality of flow deliveries and population dynamics. Trout populations were monitored before and after flow alterations in five trout streams, involving 17 study sites over a 4- to 12-year perio...

  1. Brown trout population dynamics versus long term habitat history

    OpenAIRE

    Capra, H.; Souchon, Y.; Lamouroux, N.

    2004-01-01

    The influence of stream discharge and habitat suitability history was investigated over 12 years on three natural brown trout (Salmo trutta) population dynamics. Discharge and habitat (described by Weighted Usable Area, WUA) variability during three "bottleneck" periods of population dynamics (spawning, fry, and summer) were used to explain variability of trout age-class densities (young of the year, juveniles, and adults). Discharge and WUA variability for each period was described with mean...

  2. SuchThatCast Episode 3: J.D. Trout

    OpenAIRE

    Søraker, J.H.

    2012-01-01

    SuchThatCast goes mobile in the third episode, as I interview J.D. Trout on the appr. 2 hour train ride between Enschede and Schiphol airport. Trout received his PhD in Philosophy at Cornell University and is currently Professor of Philosophy and Psychology at Loyola University Chicago. He was recently awarded the prestigious Phi Beta Kappa Romanell Professorship for 2012-13. His chief interests include the nature of scientific explanation, the psychology of human judgment, scientific realism...

  3. Evolutionary Genetics of Rainbow Trout, Parasalmo gairdnerii (Richardson)

    OpenAIRE

    Berg, William J.

    1987-01-01

    Starch-gel electrophoresis was used to obtain allozyme data from 114 populations of rainbow-series trout. Seventy-three alleles were segregating at 24 genetic loci. An additional seven loci were monomorphic in all populations. Eight genetically discrete intraspecific population-groups were identified and formal nomenclatural recognition of their subspecific status was suggested. The widespread coastal rainbow trout subspecies, Parasalmo gairdnerii gairdnerii was found to have higher levels of...

  4. Comparison of methods for the enumeration of enterohemorrhagic Escherichia coli from veal hides and carcasses.

    Science.gov (United States)

    Luedtke, Brandon E; Bosilevac, Joseph M

    2015-01-01

    The increased association of enterohemorrhagic Escherichia coli (EHEC) with veal calves has led the United States Department of Agriculture Food Safety and Inspection Service to report results of veal meat contaminated with the Top 7 serogroups separately from beef cattle. However, detection methods that can also provide concentration for determining the prevalence and abundance of EHEC associated with veal are lacking. Here we compared the ability of qPCR and a molecular based most probable number assay (MPN) to detect and enumerate EHEC from veal hides at the abattoir and the resulting pre-intervention carcasses. In addition, digital PCR (dPCR) was used to analyze select samples. The qPCR assay was able to enumerate total EHEC in 32% of the hide samples with a range of approximately 34 to 91,412 CFUs/100 cm(2) (95% CI 4-113,460 CFUs/100 cm(2)). Using the MPN assay, total EHEC was enumerable in 48% of the hide samples and ranged from approximately 1 to greater than 17,022 CFUs/100 cm(2) (95% CI 0.4-72,000 CFUs/100 cm(2)). The carcass samples had lower amounts of EHEC with a range of approximately 4-275 CFUs/100 cm(2) (95% CI 3-953 CFUs/100 cm(2)) from 17% of samples with an enumerable amount of EHEC by qPCR. For the MPN assay, the carcass samples ranged from 0.1 to 1 CFUs/100 cm(2) (95% CI 0.02-4 CFUs/100 cm(2)) from 29% of the samples. The correlation coefficient between the qPCR and MPN enumeration methods indicated a moderate relation (R (2) = 0.39) for the hide samples while the carcass samples had no relation (R (2) = 0.002), which was likely due to most samples having an amount of total EHEC below the reliable limit of quantification for qPCR. Interestingly, after enrichment, 81% of the hide samples and 94% of the carcass samples had a detectable amount of total EHEC by qPCR. From our analysis, the MPN assay provided a higher percentage of enumerable hide and carcass samples, however determining an appropriate dilution range and the limited throughput offer

  5. Comparison of methods for the enumeration of enterohemorrhagic Escherichia coli from veal hides and carcasses

    Directory of Open Access Journals (Sweden)

    Brandon E Luedtke

    2015-09-01

    Full Text Available The increased association of enterohemorrhagic Escherichia coli (EHEC with veal calves has led the United States Department of Agriculture Food Safety and Inspection Service to report results of veal meat contaminated with the Top 7 serogroups separately from beef cattle. However, detection methods that can also provide concentration for determining the prevalence and abundance of EHEC associated with veal are lacking. Here we compared the ability of qPCR and a molecular based most probable number assay (MPN to detect and enumerate EHEC from veal hides at the abattoir and the resulting pre-intervention carcasses. In addition, digital PCR (dPCR was used to analyze select samples. The qPCR assay was able to enumerate total EHEC in 32% of the hide samples with a range of approximately 34 to 91,412 CFUs/100 cm2 (95% CI 4-113,460 CFUs/100 cm2. Using the MPN assay, total EHEC was enumerable in 48% of the hide samples and ranged from approximately 1 to greater than 17,022 CFUs/100 cm2 (95% CI 0.4-72,000 CFUs/100 cm2. The carcass samples had lower amounts of EHEC with a range of approximately 4 to 275 CFUs/100 cm2 (95% CI 3-953 CFUs/100 cm2 from 17% of samples with an enumerable amount of EHEC by qPCR. For the MPN assay, the carcass samples ranged from 0.1 to 1 CFUs/100 cm2 (95% CI 0.02-4 CFUs/100 cm2 from 29% of the samples. The correlation coefficient between the qPCR and MPN enumeration methods indicated a moderate relation (R2=0.39 for the hide samples while the carcass samples had no relation (R2=0.002, which was likely due to most samples having an amount of total EHEC below the reliable limit of quantification for qPCR. Interestingly, after enrichment, 81% of the hide samples and 94% of the carcass samples had a detectable amount of total EHEC by qPCR. From our analysis, the MPN assay provided a higher percentage of enumerable hide and carcass samples, however determining an appropriate dilution range and the limited throughput offer additional

  6. Virulence of Flavobacterium columnare genomovars in rainbow trout Oncorhynchus mykiss.

    Science.gov (United States)

    Evenhuis, Jason P; LaFrentz, Benjamin R

    2016-08-01

    Flavobacterium columnare is the causative agent of columnaris disease and is responsible for significant economic losses in aquaculture. F. columnare is a Gram-negative bacterium, and 5 genetic types or genomovars have been described based on restriction fragment length polymorphism of the 16S rRNA gene. Previous research has suggested that genomovar II isolates are more virulent than genomovar I isolates to multiple species of fish, including rainbow trout Oncorhynchus mykiss. In addition, improved genotyping methods have shown that some isolates previously classified as genomovar I, and used in challenge experiments, were in fact genomovar III. Our objective was to confirm previous results with respect to genomovar II virulence, and to determine the susceptibility of rainbow trout to other genomovars. The virulence of 8 genomovar I, 4 genomovar II, 3 genomovar II-B, and 5 genomovar III isolates originating from various sources was determined through 3 independent challenges in rainbow trout using an immersion challenge model. Mean cumulative percent mortality (CPM) of ~49% for genomovar I isolates, ~1% for genomovar II, ~5% for the II-B isolates, and ~7% for the III isolates was observed. The inability of genomovar II isolates to produce mortalities in rainbow trout was unanticipated based on previous studies, but may be due to a number of factors including rainbow trout source and water chemistry. The source of fish and/or the presence of sub-optimal environment may influence the susceptibility of rainbow trout to different F. columnare genomovars. PMID:27503917

  7. Seasonal movement of brown trout in the Clinch River, Tennessee

    Science.gov (United States)

    Bettinger, J.M.; Bettoli, P.W.

    2004-01-01

    We used radiotelemetry to monitor the seasonal movements of trophy-size brown trout Salmo trutta in the Clinch River below Norris Dam, Tennessee, to determine whether establishing a special-regulation reach to reduce fishing mortality was a viable management option. Fifteen brown trout (size range, 430-573 mm total length) collected from the river were implanted with radio transmitters between November 1997 and May 1998. Forty-seven percent of these fish died or expelled their transmitters within 50 d postsurgery. The range of movement for surviving brown trout was significantly larger in fall (geometric mean range = 5,111 m) than in any other season. Four brown trout that were monitored for more than 1 year exhibited a limited range of movement (5 km) during the fall season, presumably to spawn. Brown trout also moved more during the fall than in any other season. Harvest restrictions applied to a specific reach of the Clinch River would reduce the exploitation of brown trout in that reach for most of the year but not during the fall, when many fish undertake extensive spawning migrations.

  8. A new transfer-matrix algorithm for exact enumerations: self-avoiding walks on the square lattice

    OpenAIRE

    Jensen, Iwan

    2013-01-01

    We recently published [J. Phys A: Math. Theor. {\\bf 45} 115202 (2012)] a new and more efficient implementation of a transfer-matrix algorithm for exact enumerations of self-avoiding polygons. Here we extend this work to the enumeration of self-avoiding walks on the square lattice. A detailed comparison with our previous best algorithm shows very significant improvement in the running time of the new algorithm. The new algorithm is used to extend the enumeration of self-avoiding walks to lengt...

  9. Fate of Tetracapsuloides bryosalmonae (Myxozoa) after infection of brown trout Salmo trutta and rainbow trout Oncorhynchus mykiss

    OpenAIRE

    Kumar, Gokhlesh; Abd-Elfattah, Ahmed; Saleh, Mona; El-Matbouli, Mansour

    2013-01-01

    Tetracapsuloides bryosalmonae (Myxozoa) is the causative agent of proliferative kidney disease in salmonids. We assessed differences in intensity of T. bryosalmonae infection between brown trout Salmo trutta and rainbow trout Oncorhynchus mykiss from the clinical phase of infection onwards. Specific pathogen-free fish were exposed to T. bryosalmonae spores under controlled laboratory conditions and sampled at 6, 8, 10, 12, 14, and 17 wk post exposure (wpe), and the transmission of T. bryosalm...

  10. Reproductive isolation and genetic differentiation of ferox trout from sympatric brown trout in Loch Aweand Loch Laggan, Scotland

    OpenAIRE

    Duguid, A.; Prodohl, Paulo; Ferguson, A.

    2006-01-01

    Molecular marker studies reported here, involving allozymes, mitochondrial DNA and microsatellites, demonstrate that ferox brown trout Salmo trutta in Lochs Awe and Laggan, Scotland, are reproductively isolated and genetically distinct from co-occurring brown trout. Ferox were shown to spawn primarily, and possibly solely, in a single large river in each lake system making them particularly vulnerable to environmental changes. Although a low level of introgression seems to have occurred with ...

  11. Factors influencing the distribution of brown trout (Salmo trutta) in a mountain stream: Implications for brown trout invasion success

    OpenAIRE

    Meredith, Christy

    2012-01-01

    Brown trout (Salmo trutta), one of the world’s most successful introduced species, negatively impacts native aquatic communities through predation, competition, and ecosystemlevel effects. Thus, there is a need to understand factors controlling the distribution of exotic brown trout in river systems, in order to prioritize and develop conservation and management strategies. Within the context of invasion success, I investigated how the physical template of the Logan River influences the distr...

  12. Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

    DEFF Research Database (Denmark)

    Daetwyler, Hans D; Capitan, Aurélien; Pausch, Hubert;

    2014-01-01

    The 1000 bull genomes project supports the goal of accelerating the rates of genetic gain in domestic cattle while at the same time considering animal health and welfare by providing the annotated sequence variants and genotypes of key ancestor bulls. In the first phase of the 1000 bull genomes...... project, we sequenced the whole genomes of 234 cattle to an average of 8.3-fold coverage. This sequencing includes data for 129 individuals from the global Holstein-Friesian population, 43 individuals from the Fleckvieh breed and 15 individuals from the Jersey breed. We identified a total of 28.3 million...... variants, with an average of 1.44 heterozygous sites per kilobase for each individual. We demonstrate the use of this database in identifying a recessive mutation underlying embryonic death and a dominant mutation underlying lethal chrondrodysplasia. We also performed genome-wide association studies for...

  13. Genomic Prediction from Whole Genome Sequence in Livestock: The 1000 Bull Genomes Project

    DEFF Research Database (Denmark)

    Hayes, Benjamin J; MacLeod, Iona M; Daetwyler, Hans D;

    Advantages of using whole genome sequence data to predict genomic estimated breeding values (GEBV) include better persistence of accuracy of GEBV across generations and more accurate GEBV across breeds. The 1000 Bull Genomes Project provides a database of whole genome sequenced key ancestor bulls......, for imputing sequence variant genotypes into reference sets for genomic prediction. Run 3.0 included 429 sequences, with 31.8 million variants detected. BayesRC, a new method for genomic prediction, addresses some challenges associated with using the sequence data, and takes advantage of biological...... information. In a dairy data set, predictions using BayesRC and imputed sequence data from 1000 Bull Genomes were 2% more accurate than with 800k data. We could demonstrate the method identified causal mutations in some cases. Further improvements will come from more accurate imputation of sequence variant...

  14. Effect of a β-agonist on meat quality and myofibrillar protein fragmentation in bulls.

    Science.gov (United States)

    Fiems, L O; Buts, B; Boucqué, C V; Demeyer, D I; Cottyn, B G

    1990-01-01

    Three experiments were conducted to study the effect of cimaterol on meat quality and myofibrillar protein fragmentation of the Longissimus dorsi muscle. In two experiments (Experiments 1 and 2), conducted with 16 double-muscled Belgian white-blue bulls and 15 Charolais bulls, respectively, half of the animals received 60 μg cimaterol daily per kg liveweight in the diet, during 135 and 93 days, respectively. In a third experiment, 46 normal Belgian white-blue bulls received no or 4 ppm cimaterol in the diet for 246, 127 or 71 days on average. A withdrawal period of 6 days was always applied for cimaterol-treated animals. Ultimate pH, colour and waterholding capacity were not significantly affected. The effect of cimaterol on moisture content was variable, while protein content was increased and fat was reduced. Warner-Bratzler shear force values were increased by cimaterol P meat quality. PMID:22055115

  15. The Effect of Sperm Morphology and Sire Fertility on Calving Rate of Finnish Ayrshire AI Bulls.

    Science.gov (United States)

    Attia, S; Katila, T; Andersson, M

    2016-02-01

    Good-quality semen is a prerequisite for successful and profitable artificial insemination (AI) of modern dairy cattle. Fertility of the bulls is evaluated with andrological examinations and semen analyses, such as morphology. However, little attention has been paid to the inheritance of bull fertility. In this study, we correlated sperm morphology, birth year and station of 695 AI bulls with calving rate (CR). Sperm morphology was clearly associated with CR underlining the usefulness of morphological examination in the assessment of fertility. The correlation between the proportion of normal spermatozoa and CR was significant (p sires to study the inheritance of fertility. Sire's CR did not correlate with the CR of the sons (p = 0.218). This result indicates that at least when sires of acceptable CR are used to produce sons for use in AI the inheritance of CR is not significantly correlated. PMID:26660630

  16. Manipulation of extraordinary acoustic transmission by a tunable bull's eye structure

    International Nuclear Information System (INIS)

    Extraordinary acoustic transmission (EAT) has been investigated in a tunable bull's eye structure. We demonstrate that the transmission coefficient of acoustic waves can be modulated by a grating structure. When the grating is located at a distance of 0.5 mm from the base plate, the acoustic transmission shows an 8.77-fold enhancement compared to that by using a traditional bull's eye structure. When the distance increases to 1.5 mm, the transmission approaches zero, indicating a total reflection. Thus, we can make an efficient modulation of acoustic transmission from 0 to 877%. The EAT effects have been ascribed to the coupling of structure-induced resonance with the diffractive wave and the waveguide modes, as well as the Fabry-Perot resonances. As a potential application, the modulation of far-field collimation is illustrated in the proposed bull's eye structure. (rapid communication)

  17. Production and quality of beef from young bulls fed diets supplemented with peanut cake.

    Science.gov (United States)

    Correia, B R; Carvalho, G G P; Oliveira, R L; Pires, A J V; Ribeiro, O L; Silva, R R; Leão, A G; Simionato, J I; Carvalho, B M A

    2016-08-01

    Peanut cake is a biodiesel byproduct that has been tested as an alternative feed additive for use in cattle production. This study aimed to assess the importance of dietary peanut cake inclusion for young bull growth rate, beef production, and beef quality. In total, 32 Nellore young bulls individually housed in stalls with a mean initial body weight of 390±43.5kg were distributed in a completely randomized design for the experiment. The animals were fed Tifton 85 hay and one of four concentrate mixtures with 0, 33, 66 or 100% peanut cake instead of soybean meal. There was a linear reduction (Pcake at levels up to 100% in the diet of feedlot-finished young bulls promotes a beneficial increase in the levels of PUFAs and the following nutraceutical compounds: conjugated linoleic acid (CLA) and Ω3 and Ω6 fatty acids. PMID:27050756

  18. Method for identification of rigid domains and hinge residues in proteins based on exhaustive enumeration.

    Science.gov (United States)

    Sim, Jaehyun; Sim, Jun; Park, Eunsung; Lee, Julian

    2015-06-01

    Many proteins undergo large-scale motions where relatively rigid domains move against each other. The identification of rigid domains, as well as the hinge residues important for their relative movements, is important for various applications including flexible docking simulations. In this work, we develop a method for protein rigid domain identification based on an exhaustive enumeration of maximal rigid domains, the rigid domains not fully contained within other domains. The computation is performed by mapping the problem to that of finding maximal cliques in a graph. A minimal set of rigid domains are then selected, which cover most of the protein with minimal overlap. In contrast to the results of existing methods that partition a protein into non-overlapping domains using approximate algorithms, the rigid domains obtained from exact enumeration naturally contain overlapping regions, which correspond to the hinges of the inter-domain bending motion. The performance of the algorithm is demonstrated on several proteins. PMID:25820699

  19. A rapid method for the nonselective enumeration of Yersinia enterocolitica, a foodborne pathogen associated with pork.

    Science.gov (United States)

    Wang, Haoran; Palmer, Jon; Flint, Steve

    2016-03-01

    An impedance method was developed as a rapid, convenient method to enumerate pure culture of Yersinia enterocolitica. Cultures were incubated in trypticase soy broth (TSB) at 30°C. The BacTrac™ 4000 microorganism growth analyser was used to detect impedance change of TSB representing bacteria cell numbers in the samples. Good correlations with standard plate counts were obtained (r(2)>0.95). This method is also reliable to enumerate Y. enterocolitica growing in biofilms attached to stainless steel. Compared with a standard plate count which involves dislodging biofilms from surfaces, this method is more convenient saving both time and effort. Therefore, it will be useful to study the conditions required for the biofilm growth and control of Y. enterocolitica that could be applied to the pork industry. PMID:26613189

  20. An improved Rosenbluth Monte Carlo scheme for cluster counting and lattice animal enumeration

    CERN Document Server

    Care, C M

    1999-01-01

    We describe an algorithm for the Rosenbluth Monte Carlo enumeration of clusters and lattice animals. The method may also be used to calculate associated properties such as moments or perimeter multiplicities of the clusters. The new scheme is an extension of the Rosenbluth method for growing polymer chains and is a simplification of a scheme reported earlier by one of the authors. The algorithm may be used to estimate the number of distinct lattice animals on any lattice topology. The method is validated against exact and Monte Carlo enumerations for clusters up to size 50, on a two dimensional square lattice and three dimensional simple cubic lattice. The method may be readily adapted to yield Boltzmann weighted averages over clusters.

  1. The impact of screening-test negative samples not enumerated by MPN

    DEFF Research Database (Denmark)

    Corbellini, Luis Gustavo; Ribeiro Duarte, Ana Sofia; de Knegt, Leonardo; Silva, Luis Eduardo da; Cardoso, Marisa; Nauta, Maarten

    2015-01-01

    In microbiological surveys, false negative results in detection tests precluding the enumeration by MPN may occur. The objective of this study was to illustrate the impact of screening test failure on the probability distribution of Salmonella concentrations in pork using a Bayesian method. A total...... of 276 swab samples in four slaughter steps (69 samples in each slaughter step: after dehairing, after singeing, after evisceration, and before chilling) were screened for Salmonella and enumerated by the MPN method. Salmonella contamination data were fitted to a lognormal distribution by using a...... Bayesian model that uses the number of positive tubes at each dilution in an MPN analysis to estimate the parameters of the concentration distribution. With Salmonella paired data, three data sets were used for each slaughter step: one that includes the positives in the screening test only, a second one...

  2. Enumerating maximal definite quadratic forms of bounded class number over Z in n >= 3 variables

    CERN Document Server

    Hanke, Jonathan

    2011-01-01

    In this paper we give an algorithm for enumerating all primitive (positive) definite maximal Z-valued quadratic forms Q in n >= 3 variables with bounded class number h(Q) = 3 variables. Using this we determine that there are exactly 115 primitive positive definite maximal Z-valued quadratic forms in n >= 3 variables of class number one, and produce a list of them. In a future paper we will complete this chain of ideas by extending these algorithms to allow the enumeration of all primitive maximal totally definite O_F-valued quadratic lattices of rank n >= 3, where O_F is the ring of integers of any totally real number field F.

  3. Evaluation of a dry, rehydratable film method for rapid enumeration of Staphylococcus aureus.

    Science.gov (United States)

    Mach, P A; Lindberg, K G; Lund, M E

    2000-01-01

    Results with the new 3M Petrifilm Rapid S. aureus Count (RSA) Plate method were compared with those of the classical Baird-Parker agar (BPA) method for detection and enumeration of Staphylococcus aureus. Studies on 219 bacterial strains demonstrated that the Petrifilm RSA plate is more sensitive than and as specific as the classical BPA method for confirmed identification of S. aureus. Counts of colonies from 71 pure cultures, 61 naturally contaminated food samples, and more than 750 artificially inoculated food samples showed that the Petrifilm RSA method was as effective as the classical BPA method for identification and enumeration of S. aureus. The Petrifilm RSA method gave results in one-third the time required for the classical method. PMID:11048850

  4. Effects of slaughter weight and carcass electrical stimulation on the quality and palatability of beef from young purebred bulls.

    Science.gov (United States)

    Solomon, M B; West, R L; Hentges, J F

    1986-12-01

    Seventy-eight purebred Angus and Brahman bulls (10 to 18 mo at slaughter) were used to determine the effects of slaughter weight (60, 80, 90 or 100% of the average mature-cow weight for the respective breed) and carcass electrical stimulation (500 V, 20 2-s impulses on the right side) on carcass and meat characteristics. Angus bulls grazed summer forage (millet) after weaning, while Brahman bulls were fed to stimulate gains achieved on forage by Angus bulls. Bulls were then placed in the feedlot for finishing to their designated slaughter weight (293, 381, 412 and 463 kg for Angus and 316, 420, 463 and 516 kg for Brahman). Coarse dark band formation and lean color problems normally associated with bullock carcasses were either eliminated or reduced by stimulation. Increasing slaughter weight from 60 to 90% was associated with an increase in panel tenderness scores for loin steaks. However, increasing slaughter weight from 90 to 100% little change was detected. On the other hand, shear values for loin steaks decreased with increasing slaughter weight. Stimulation increased the tenderness of loin steaks as determined by both panel scores and shear values, and of bottom round steaks (shear-force values). The data from this study suggest that meat from the bulls slaughtered at lighter weights was generally tough, but was improved when bulls were fed to heavier, yet acceptable weights. This research encourages implementation of electrical stimulation on carcasses from young bulls to improve quality-indicating factors. PMID:3818464

  5. 75 FR 25794 - Regulated Navigation Area: Red Bull Air Race World Championship, Upper New York Bay, Lower Hudson...

    Science.gov (United States)

    2010-05-10

    ... SECURITY Coast Guard 33 CFR Part 165 RIN 1625-AA08 Regulated Navigation Area: Red Bull Air Race World... State Park, New Jersey and Ellis Island, New Jersey and New York for the Red Bull Air Race World..., 2008, issue of the Federal Register (73 FR 3316). Public Meeting We do not now plan to hold a...

  6. Micro-scale distribution of brown trout: an opportunity for kin selection?

    DEFF Research Database (Denmark)

    Carlsson, J.; Carlsson, J.E.L.

    2002-01-01

    Fourteen microsatellite loci were used to analyse the degree of relatedness between and within cohorts of stream-living brown trout (Salmo trutta L.). Differences in degree of relatedness were found between cohorts with mature and older having the highest intracohort relatedness. The higher genetic...... relatedness among the mature and older trout is interpreted as indications of clustering of related mature and older trout prior to spawning in the vicinity of spawning grounds. Young-of-the-year trout showed a lower degree of association with related trout of the same cohort than did mature and older trout....... It is argued that the clustering of mature and older trout may facilitate kin selection and that the low degree of association among related young-of-the-year trout could be explained by juvenile fish avoiding competition for territories with related individuals...

  7. Separating the Classes of Recursively Enumerable Languages Based on Machine Size

    Czech Academy of Sciences Publication Activity Database

    van Leeuwen, J.; Wiedermann, Jiří

    2015-01-01

    Roč. 26, č. 6 (2015), s. 677-695. ISSN 0129-0541 R&D Projects: GA ČR GAP202/10/1333 Grant ostatní: GA MŠk(CZ) GA15-04960S Institutional support: RVO:67985807 Keywords : recursively enumerable languages * RE hierarchy * finite languages * machine size * descriptional complexity * Turing machines with advice Subject RIV: IN - Informatics, Computer Science Impact factor: 0.296, year: 2014

  8. Enumeration and Characterization of Acidophilic Microorganisms Isolated from a Pilot Plant Stirred-Tank Bioleaching Operation

    OpenAIRE

    Okibe, Naoko; Gericke, Mariekie; Hallberg, Kevin B.; Johnson, D. Barrie

    2003-01-01

    Microorganisms were enumerated and isolated on selective solid media from a pilot-scale stirred-tank bioleaching operation in which a polymetallic sulfide concentrate was subjected to biologically accelerated oxidation at 45°C. Four distinct prokaryotes were isolated: three bacteria (an Acidithiobacillus caldus-like organism, a thermophilic Leptospirillum sp., and a Sulfobacillus sp.) and one archaeon (a Ferroplasma-like isolate). The relative numbers of these prokaryotes changed in the three...

  9. Specific Dot-Immunobinding Assay for Detection and Enumeration of Thiobacillus ferrooxidans

    OpenAIRE

    Arredondo, Renato; Jerez, Carlos A.

    1989-01-01

    A specific and very sensitive dot-immunobinding assay for the detection and enumeration of the bioleaching microorganism Thiobacillus ferrooxidans was developed. Nitrocellulose spotted with samples was incubated with polyclonal antisera against whole T. ferrooxidans cells and then in 125I-labeled protein A or 125I-labeled goat antirabbit immunoglobulin G; incubation was followed by autoradiography. Since a minimum of 103 cells per dot could be detected, the method offers the possibility of si...

  10. Enumeration of Bacteriophages and Host Bacteria in Sewage and the Activated-Sludge Treatment Process

    OpenAIRE

    Donald L. Ewert; Paynter, M. J. B.

    1980-01-01

    Bacteriophage populations in an activated-sludge sewage treatment plant were enumerated. A newly developed assay for quantitation of total phages, employing direct electron microscopic counts, was used in conjunction with the plaque assay. The total concentration of phages was significantly higher in reactor mixed liquor and effluent than in influent sewage, indicating a net production of phages within the reactor. Maximum total phage concentrations in the fluid phase of sewage, activated-slu...

  11. A biclustering algorithm based on a Bicluster Enumeration Tree: application to DNA microarray data

    OpenAIRE

    Ayadi Wassim; Elloumi Mourad; Hao Jin-Kao

    2009-01-01

    Abstract Background In a number of domains, like in DNA microarray data analysis, we need to cluster simultaneously rows (genes) and columns (conditions) of a data matrix to identify groups of rows coherent with groups of columns. This kind of clustering is called biclustering. Biclustering algorithms are extensively used in DNA microarray data analysis. More effective biclustering algorithms are highly desirable and needed. Methods We introduce BiMine, a new enumeration algorithm for biclust...

  12. Evaluation of three newly developed direct plating media to enumerate Listeria monocytogenes in foods.

    OpenAIRE

    Cassiday, P. K.; Brackett, R E; Beuchat, L R

    1989-01-01

    LiCl-phenylethanol-moxalactam Agar (LPMA), ARS Modified McBride Agar, and Modified Vogel Johnson Agar were compared with previously tested plating media in the enumeration of Listeria monocytogenes from pasteurized whole milk, chocolate ice cream mix, Brie cheese, and raw cabbage. LPMA was most suitable for analyzing Brie cheese and cabbage. Gum base-nalidixic acid-tryptone-soya medium (previously tested) was most suitable for analyzing milk and chocolate ice cream mix.

  13. Evaluation of three newly developed direct plating media to enumerate Listeria monocytogenes in foods.

    Science.gov (United States)

    Cassiday, P K; Brackett, R E; Beuchat, L R

    1989-06-01

    LiCl-phenylethanol-moxalactam Agar (LPMA), ARS Modified McBride Agar, and Modified Vogel Johnson Agar were compared with previously tested plating media in the enumeration of Listeria monocytogenes from pasteurized whole milk, chocolate ice cream mix, Brie cheese, and raw cabbage. LPMA was most suitable for analyzing Brie cheese and cabbage. Gum base-nalidixic acid-tryptone-soya medium (previously tested) was most suitable for analyzing milk and chocolate ice cream mix. PMID:2504112

  14. An exact enumeration of self-avoiding loops on a square lattice

    International Nuclear Information System (INIS)

    An exact enumeration of self-avoiding loops on a set of finite simple square lattices is performed. The partition function zeroes distribution is shown to be oval-like, in contrast to two intersecting circles, as in the case of the Ising model. An analysis of the partition function zeroes distribution shows the closeness of the critical point of the model to the ferromagnetic one of the Ising model. (author). 15 refs, 3 figs, 1 tab

  15. An improved Rosenbluth Monte Carlo scheme for cluster counting and lattice animal enumeration

    OpenAIRE

    Care, C. M.; Ettelaie, R.

    1999-01-01

    We describe an algorithm for the Rosenbluth Monte Carlo enumeration of clusters and lattice animals. The method may also be used to calculate associated properties such as moments or perimeter multiplicities of the clusters. The new scheme is an extension of the Rosenbluth method for growing polymer chains and is a simplification of a scheme reported earlier by one of the authors. The algorithm may be used to estimate the number of distinct lattice animals on any lattice topology. The method ...

  16. Enumeration versus multiple object tracking: the case of action video game players

    OpenAIRE

    Green, C.S.; Bavelier, D.

    2005-01-01

    Here, we demonstrate that action video game play enhances subjects’ ability in two tasks thought to indicate the number of items that can be apprehended. Using an enumeration task, in which participants have to determine the number of quickly flashed squares, accuracy measures showed a near ceiling performance for low numerosities and a sharp drop in performance once a critical number of squares was reached. Importantly, this critical number was higher by about two items in video game players...

  17. Comparison of methods for isolation and enumeration of thermophilic actinomycetes from dust.

    OpenAIRE

    Treuhaft, M W; Arden Jones, M P

    1982-01-01

    Thermophilic actinomycetes are the primary sensitizing agents in farmer's lung disease. We compared dilution pour-plate and spread-plate methods for their usefulness in enumerating thermophilic actinomycetes in moldy silage dust and evaluated the ability of a nonquantitative gravity settling technique to recover thermophilic actinomycetes from moldy silage. Spread plates and pour plates yielded similar estimates of total thermophiles. Higher counts were observed on spread plates (P less than ...

  18. Evaluation of Methods for Sampling, Recovery, and Enumeration of Bacteria Applied to the Phylloplane

    OpenAIRE

    Donegan, Katherine; Matyac, Carl; Seidler, Ramon; Porteous, Arlene

    1991-01-01

    Determining the fate and survival of genetically engineered microorganisms released into the environment requires the development and application of accurate and practical methods of detection and enumeration. Several experiments were performed to examine quantitative recovery methods that are commonly used or that have potential applications. In these experiments, Erwinia herbicola and Enterobacter cloacae were applied in greenhouses to Blue Lake bush beans (Phaseolus vulgaris) and Cayuse oa...

  19. Quantitative PCR for Detection and Enumeration of Genetic Markers of Bovine Fecal Pollution▿ †

    OpenAIRE

    Shanks, Orin C.; Atikovic, Emina; Blackwood, A. Denene; Lu, Jingrang; Noble, Rachel T.; Domingo, Jorge Santo; Seifring, Shawn; Sivaganesan, Mano; Haugland, Richard A.

    2007-01-01

    Accurate assessment of health risks associated with bovine (cattle) fecal pollution requires a reliable host-specific genetic marker and a rapid quantification method. We report the development of quantitative PCR assays for the detection of two recently described bovine feces-specific genetic markers and a method for the enumeration of these markers using a Markov chain Monte Carlo approach. Both assays exhibited a range of quantification from 25 to 2 × 106 copies of target DNA, with a coeff...

  20. An example of geometric origami design with benefit of graph enumeration algorithms

    OpenAIRE

    Dureisseix, David

    2016-01-01

    This article is concerned with an example of complex planar geometry arising from flat origami challenges. The complexity of solution algorithms is illustrated, depending on the depth of the initial analysis of the problem, starting from brute force enumeration, up to the equivalence to a dedicated problem in graph theory. This leads to algorithms starting from an untractable case on modern computers, up to a run of few seconds on a portable personal computer. This emphasizes the need for a p...

  1. MEAT QUALITY FROM CHAROLAIS BULLS FED DIETS WITH DIFFERENT LEVELS OF CORN SILAGE INCLUSION

    Directory of Open Access Journals (Sweden)

    G. Cozzi

    2007-06-01

    Full Text Available A sample of 6 intensive beef farms was selected according to the feeding plan adopted during the fattening period of Charolais bulls. Two farms did not include any corn silage in the diet (CS0, while corn silage represented 22% of the dietary DM in the second group of 2 farms (CS22, and it raised up to 44% of the dietary DM in the last 2 farms (CS44. Five bulls were randomly selected from each farm to be slaughtered in the same abattoir. Bulls age was similar across treatments but the CS44 bulls had a lower carcass weight (396 kg than the other two treatments (436 and 446 kg for CS0 and CS22, respectively. Carcass fleshiness (SEUROP and fatness scores were not affected by the level of corn silage in the diet. Meat quality was evaluated on a joint sample of the m. Longissimus thoracis, excised from the 5th to the 9th rib of each right half carcass 24 h post-mortem, after an ageing period of 10 d vacuum packaged at 4°C. Meat chemical analysis showed no variations in pH, DM, intramuscular fat and protein content due to the different silage inclusion in the diet. Only the cholesterol content was progressively reduced in the meat of bulls fed increasing quantities of corn silage according to a significant negative linear trend. Meat colour, cooking losses and shear force values were not affected by the diet. Therefore, based on these findings there are no substantial arguments against the use of a large amount of corn silage in the fattening diets of Charolais bulls.

  2. Intracellular diffusion restrictions in isolated cardiomyocytes from rainbow trout

    Directory of Open Access Journals (Sweden)

    Birkedal Rikke

    2009-12-01

    Full Text Available Abstract Background Restriction of intracellular diffusion of adenine nucleotides has been studied intensively on adult rat cardiomyocytes. However, their cause and role in vivo is still uncertain. Intracellular membrane structures have been suggested to play a role. We therefore chose to study cardiomyocytes from rainbow trout (Oncorhynchus mykiss, which are thinner and have fewer intracellular membrane structures than adult rat cardiomyocytes. Previous studies suggest that trout permeabilized cardiac fibers also have diffusion restrictions. However, results from fibers may be affected by incomplete separation of the cells. This is avoided when studying permeabilized, isolated cardiomyocytes. The aim of this study was to verify the existence of diffusion restrictions in trout cardiomyocytes by comparing ADP-kinetics of mitochondrial respiration in permeabilized fibers, permeabilized cardiomyocytes and isolated mitochondria from rainbow trout heart. Experiments were performed at 10, 15 and 20°C in the absence and presence of creatine. Results Trout cardiomyocytes hypercontracted in the solutions used for mammalian cardiomyocytes. We developed a new solution in which they retained their shape and showed stable steady state respiration rates throughout an experiment. The apparent ADP-affinity of permeabilized cardiomyocytes was different from that of fibers. It was higher, independent of temperature and not increased by creatine. However, it was still about ten times lower than in isolated mitochondria. Conclusions The differences between fibers and cardiomyocytes suggest that results from trout heart fibers were affected by incomplete separation of the cells. However, the lower ADP-affinity of cardiomyocytes compared to isolated mitochondria indicate that intracellular diffusion restrictions are still present in trout cardiomyocytes despite their lower density of intracellular membrane structures. The lack of a creatine effect indicates that

  3. Breed and other effects on reproductive traits and breeding soundness categorization in young beef bulls in Florida.

    Science.gov (United States)

    Chenoweth, P J; Chase, C C; Thatcher, M J; Wilcox, C J; Larsen, R E

    1996-11-01

    Yearling, grass-fed, beef bulls at the USDA Subtropical Agricultural Research Station, Brooksville, Florida, were assessed for physical and semen traits in January, April, July and October of 1991 (Trial 1) and 1992 (Trial 2). Bulls were given a breeding soundness evaluation (BSE) using revised semen and scrotal circumference (SC) criteria. In Trial 1, the bulls consisted of Angus (n = 15), Brahman (n = 14), Hereford (n = 15) and Senepol (n = 14). In Trial 2, the breeds were Angus (n = 15), Brahman (n = 16), Romosinuano (n = 13) and Nellore x Brahman (n = 9). Trial bulls generally showed delayed growth compared with grain-fed bulls in temperate environments. Breed influenced semen traits (percentage sperm motility, normal spermatozoa and those with primary abnormalities) in both trials. Temperate Bos taurus breeds (Angus, Hereford) were generally superior to Bos indicus breeds (Brahman, Nellore x Brahman). Tropically-adapted Bos taurus breeds (Senepol, Romosinuano) were intermediate for those traits tested. In general, tropically-adapted Bos taurus breeds were more similar in reproductive development to temperate Bos taurus than to Bos indicus breeds. Breed by test period interactions occurred and were mainly influenced by delayed sexual maturity of Bos indicus bulls. Qualitative semen traits increased with bull age, particularly from 12 to 18 mo. Scrotal circumference development was slower in the Bos indicus breeds. Bulls of satisfactory BSE status at 18.1 to 22 mo of age were 73.9% in Trial 1 and 58.5% in Trial 2. Brahman bulls had the least satisfactory BSE scores in both years (Trial 1, 44.4%; Trial 2, 22.2%). Most bulls failed to achieve satisfactory BSE status due to a small SC relative to age (Trial 1, 66%; Trial 2, 72%). The most efficacious use of the BSE was > or = 15 mo in Bos taurus bulls and > 18 mo for Bos indicus bulls. Although the BSE has proven to be useful for the assessment of young, pasture-raised bulls in semi-tropical environments, use of SC

  4. An information theory criteria based blind method for enumerating active users in DS-CDMA system

    Science.gov (United States)

    Samsami Khodadad, Farid; Abed Hodtani, Ghosheh

    2014-11-01

    In this paper, a new and blind algorithm for active user enumeration in asynchronous direct sequence code division multiple access (DS-CDMA) in multipath channel scenario is proposed. The proposed method is based on information theory criteria. There are two main categories of information criteria which are widely used in active user enumeration, Akaike Information Criterion (AIC) and Minimum Description Length (MDL) information theory criteria. The main difference between these two criteria is their penalty functions. Due to this difference, MDL is a consistent enumerator which has better performance in higher signal-to-noise ratios (SNR) but AIC is preferred in lower SNRs. In sequel, we propose a SNR compliance method based on subspace and training genetic algorithm to have the performance of both of them. Moreover, our method uses only a single antenna, in difference to the previous methods which decrease hardware complexity. Simulation results show that the proposed method is capable of estimating the number of active users without any prior knowledge and the efficiency of the method.

  5. Evaluation of confocal laser scanning microscopy for enumeration of virus-like particles in aquatic systems

    Science.gov (United States)

    Agis, Martin; Luef, Birgit

    2016-01-01

    Abstract Abundances of virus-like particles (VLPs, mostly bacteriophages) are high in aquatic environments; therefore, techniques for precise enumeration are essential in ecological monitoring. VLPs were determined after staining with SYBR Gold by conventional epifluorescence microscopy and compared to enumerations performed by confocal laser scanning microscopy (CLSM). In order to assess the potential of CLSM for viral direct counts (VDCs), we processed samples from different freshwater and marine systems. Optical sectioning by CLSM and production of an overlay picture of multiple scans enables the often uneven whole investigated filter area to be brought to the plane of focus. This allows for subsequent image analysis of digitally created high-quality images. Another advantage using the CLSM was that the short spot excitation of the stain via laser beam minimized fading of the stain. The VDC results show that there is no significant difference between the two methods. Regarding the known difficulties of viral abundance estimates on particulate material, CLSM was further applied to enumerate VLPs on a small set of marine transparent exopolymeric particles sampled from the Atlantic Ocean. Our data suggest that CLSM is a useful tool to count viruses in water samples as well as attached to certain types of aquatic aggregates. PMID:23108709

  6. The effect of paternal bull on milk fat composition of dairy cows of different breeds

    Directory of Open Access Journals (Sweden)

    Katarína Kirchnerová

    2015-05-01

    Full Text Available Intake of milk fat in human nutrition is important because of unsaturated and especially essential fatty acids (FAs, linoleic and α-linolenic acid, and conjugated linoleic acid (CLA, which is found only in meat and milk of ruminants. The objective of our study was to investigate the effect of paternal bulls on fatty acids composition in milk fat of dairy cows of different breeds. The milk samples were taken in total from 299 dairy cows from 11 dairy farms. In experiment Holstein (H, n = 105, Red Holstein (R, n = 120 and Pinzgau (P, n = 74 breeds originated from different bulls were used. Individual milk samples were analyzed for fatty acids in milk fat using gas chromatography (apparatus GC Varian 3800, Techtron, USA, using FID detector in capillary column Omegawax 530; 30 m. In the chromatography records there were identified 54 fatty acids inclusive of particular isomers. Their relative proportions were expressed in percent's (%. Among the studied breeds, the highest content of conjugated linoleic acid (CLA - 0.67%, essential FAs (EFA - 2.98%, monounsaturated FAs (MUFA - 25.84% and the lowest atherogenic index (AI - 3.10 was at breed P. Within this breed there was high variability and daughters of bull COS1 achieved significant above-average values of CLA content 1.07%, EFA 3.71%, MUFA 29.93% and under breed average AI = 2.40. The group of daughters of NOB3 was significant lower in CLA, 0.50% as compared with an average of P breed. . From the breed H bull MTY2 showed significantly higher value of 0.62% CLA, EFA 3.42%, 34.29% MUFA and lower value of AI, 1.9 as compared to H breed average. Statistically significantly lower levels of CLA 0.29% and 21.46% MUFA and higher AI 3.72 in milk fat of his daughters, bull STY3 may be considered as potential worser of these properties. At the breed R bull MOR506 showed in compar to the breed average significantly higher value of the EFA 3.80% and also the higher content of CLA 0.50% and MUFA 25

  7. Larval density and the Charnov–Bull model of adaptive environmental sex determination in a copepod

    OpenAIRE

    Voordouw, Maarten J.; Robinson, H. Eve; Stebbins, Gabe; Albert, Arianne Y. K.; Anholt, Bradley R

    2011-01-01

    Charnov et Bull avancent que la variation de la taille adulte induite par le milieu en combinaison avec les différences sexuelles de fitness peut sélectionner l'évolution de la détermination sexuelle adaptative due au milieu (ESD). Dans notre étude, nous déterminons si la densité larvaire affecte la détermination sexuelle chez le copépode Tigriopus californicus (Baker, 1912) comme le prédisent Charnov et Bull. Les individus élevés à densités faibles se développent plus rapidement et sont sign...

  8. Growth and carcass traits of young bulls sired by Charolais and Limousin

    OpenAIRE

    Silvester Žgur; Marko Čepon; Mojca Simčič

    2010-01-01

    A brown cattle is dual purpose cattle in Slovenia mainly used for milk production. This study included 90 crossbred young bulls of two genotypes, 70 Brown x Limousin (BRxLIM) and 20 Brown x Charolais (BRxCHA). The aim of this study was to determine some growth and carcass characteristics of crossbred young bulls. Data were analysed by GLM procedure considering sire breed and year nested within sire breed as fixed effects and slaughter age as linear regression. Sire breed statistically signifi...

  9. Viability of bull spermatozoa collected from the epididymis stored at 18-20°C

    OpenAIRE

    Melina Andrea Formighieri Bertol; Romildo Romualdo Weiss; Vanete Thomaz-Soccol; Luiz Ernandes Kozicki; Aline Silva Fujita; Renata Azevedo de Abreu; Kerriel Thandile Green

    2013-01-01

    The aim of this study was to evaluate the viability of bull spermatozoa collected from the cauda epididymis stored at 18-20°C, which were compared with semen collected by electro-ejaculation method and preserved at 5°C. Ten pairs of testes from Tabapuã bulls were removed by orchiectomy and stored for 6 (G6), 12 (G12), 18 (G18), 24 (G24) and 30 (G30) h at room temperature (18-20°C). Seven days before orchiectomy, semen was collected by electro-ejaculation method. The sperm parameters evaluated...

  10. Quantitative Histology Studies on the Test in Hybrid Bull of Wild and Domestic Yak

    Institute of Scientific and Technical Information of China (English)

    阎萍

    2005-01-01

    The testicular tissue of three types of yak bull (1/2 wild yak,cross 1/2 wild yak and domestic yak) were studied quantitatively at 6,12,18 and 24 months old. The results showed that the average values changed from breed to breed at the same age. But there were no significant difference. The volume density and the height of seminiferous tubule and epithelium increased with the age and testicular weight. The capacity rate of the testicular seminiferous tubule in three types were 78.71% ,75.78% and 78.58% respectively, which nearly reached the level of mature bull.

  11. Asymmetric Responses of CAPM - Beta to the Bull and Bear Markets on the Bucharest Stock Exchange

    OpenAIRE

    RĂZVAN ŞTEFĂNESCU; COSTEL NISTOR; RAMONA DUMITRIU

    2009-01-01

    The CAPM - beta is one of the most used tools to estimate the systematic risks associated to stock. In the last decades different behaviours of beta were revealed for the circumstances of the bull and the bear markets. This paper analyses the CAPM – beta responses for bad and good news for ten representative stocks from the Bucharest Stock Exchange. We identify the bull, the bear and the tranquil markets using a univariate kernal density function and we calculate for each stage the single and...

  12. The internationalization process of Red Bull from the perspectives of global expansion

    OpenAIRE

    Watthanachai, Thitiporn; Sarasalin, Karakawat

    2010-01-01

    Date: 23rd November, 2009   Level: Master Thesis in International Business and Entrepreneurship (EFO705), 15 credits   Authors: Karakawat Sarasalin (830117-T255)    Thitiporn Watthanachai (831031-T124)                        Title: The internationalization process of Red Bull from the perspectives of global expansion Supervisor: Jean-Charles Languilaire Problem Statement: How did RED BULL manage to be as an important central international market ...

  13. Heavy metal contamination and hepatic toxicological responses in brown trout (Salmo trutta) from the Kerguelen Islands

    OpenAIRE

    Jaffal, Ali; Betoulle, Stéphane; Biagianti-Risbourg, Sylvie; Terreau, Alexandre; Sanchez, Wilfried; Paris-Palacios, Séverine

    2015-01-01

    The Kerguelen Islands include various species of freshwater fish such as brown trout (Salmo trutta). These trout are among the most isolated from direct anthropogenic impact worldwide. This study was designed to analyse cadmium (Cd) and copper (Cu) concentrations in the liver of Kerguelen brown trout, and to assess the possible impacts of these metals on hepatic histopathology and oxidative stress parameters (superoxide dismutase and catalase activity and glutathione levels). Trout were caugh...

  14. Spatial and temporal movement dynamics of brook Salvelinus fontinalis and brown trout Salmo trutta

    Science.gov (United States)

    Davis, L.A.; Wagner, Tyler; Barton, Meredith L.

    2015-01-01

    Native eastern brook trout Salvelinus fontinalis and naturalized brown trout Salmo trutta occur sympatrically in many streams across the brook trout’s native range in the eastern United States. Understanding within- among-species variability in movement, including correlates of movement, has implications for management and conservation. We radio tracked 55 brook trout and 45 brown trout in five streams in a north-central Pennsylvania, USA watershed to quantify the movement of brook trout and brown trout during the fall and early winter to (1) evaluate the late-summer, early winter movement patterns of brook trout and brown trout, (2) determine correlates of movement and if movement patterns varied between brook trout and brown trout, and (3) evaluate genetic diversity of brook trout within and among study streams, and relate findings to telemetry-based observations of movement. Average total movement was greater for brown trout (mean ± SD = 2,924 ± 4,187 m) than for brook trout (mean ± SD = 1,769 ± 2,194 m). Although there was a large amount of among-fish variability in the movement of both species, the majority of movement coincided with the onset of the spawning season, and a threshold effect was detected between stream flow and movement: where movement increased abruptly for both species during positive flow events. Microsatellite analysis of brook trout revealed consistent findings to those found using radio-tracking, indicating a moderate to high degree of gene flow among brook trout populations. Seasonal movement patterns and the potential for relatively large movements of brook and brown trout highlight the importance of considering stream connectivity when restoring and protecting fish populations and their habitats.

  15. The role of environmental transfer of macro-elements in the Brown trout Salmo trutta

    OpenAIRE

    Baszyński, Jędrzej; Kamiński, Piotr; Koim-Puchowska, Beata

    2015-01-01

    In natural habitat of river Słupia researchers observe the fall condition among Brown trouts and their morbidity on ulcerative dermal necrosis. Trout's shape is strictly connected with elemental economy. In recent study we analyse the macroelements economy (Na, Mg, K, Ca, P) in trout's organism on different growth stages: young and adult individuals, inside trout's organs (muscles, gills, liver, fins), in periods of 2006-2007 and 2011-2012. We analyse the concentrations of chosen chemical ele...

  16. Admixture analysis and stocking impact assessment in brown trout ( Salmo trutta ), estimated with incomplete baseline data

    DEFF Research Database (Denmark)

    Hansen, Michael Møller; Eg Nielsen, Einar; Bekkevold, Dorte; Mensberg, Karen-Lise Dons

    2001-01-01

    . Consequently, stocking had little effect on improving fisheries. In one population, the genetic contribution by domesticated trout was small, whereas in the other population, some genetic impact was suggested. Admixture in this sample of anadromous trout despite absence of stocked domesticated trout could be...

  17. Exploring trends, causes, and consequences of declining lipids in Lake Superior lake trout

    Science.gov (United States)

    The ability of lake trout to forage in deepwater habitats is facilitated by high lipid content, which affords buoyancy. In Lake Superior, lean lake trout historically occupied depths < 80 m, and siscowet lake trout occupied depths > 80 m. Siscowets have been known f...

  18. Multicanonical simulation of the Domb-Joyce model and the Go model: new enumeration methods for self-avoiding walks

    OpenAIRE

    Shirai, Nobu C.; Kikuchi, Macoto

    2012-01-01

    We develop statistical enumeration methods for self-avoiding walks using a powerful sampling technique called the multicanonical Monte Carlo method. Using these methods, we estimate the numbers of the two dimensional N-step self-avoiding walks up to N=256 with statistical errors. The developed methods are based on statistical mechanical models of paths which include self-avoiding walks. The criterion for selecting a suitable model for enumerating self-avoiding walks is whether or not the conf...

  19. Stocking impact and migration pattern in an anadromous brown trout (Salmo trutta) complex: where have all the stocked spawning sea trout gone?

    Science.gov (United States)

    Ruzzante, Daniel E; Hansen, Michael M; Meldrup, Dorte; Ebert, Kaare M

    2004-06-01

    We examined polymorphism at seven microsatellite loci among sea trout (Salmo trutta) (n = 846) collected from three areas in the Limfjord (Denmark). We then assessed their potential population source by comparing, using a mixed stock analysis (MSA) Bayesian framework, their genetic composition to that of brown trout collected from 32 tributaries pooled into nine geographical regions (n = 3801) and two hatcheries (n = 222) used for stocking. For each of the three regional sea trout groups (western, central and eastern Limfjord, n = 91, n = 426, n = 329, respectively), MSA was conducted with (i) all individuals in the group, (ii) with the subset of spawning sea trout only and (iii) with the subset of foraging, nonspawning individuals only, a subset that consisted primarily of sea trout caught during their first year at sea. For all three regional sea trout groups, a higher proportion of individuals (regardless of whether they were foraging or spawning) appear to have originated from the rivers that drain locally, than from the rivers that drain in other parts of the Limfjord. This suggests (1) that sea trout, at least during their first year at sea, undertake limited migrations within the Limfjord system and (2) that sea trout on their spawning run were caught close to their natal rivers. The proportion of sea trout of hatchery origin varied widely among all three Limfjord areas and broadly reflected regional stocking histories, with high proportions of sea trout of domestic origin in the east (39.3%), where stocking with domestic trout was practised intensely at the time of sampling, and in the west (57.2%), where a programme of coastal stocking of post smolts took place over several years in the early 1990s. In contrast, in the central Limfjord, where stocking with domestic trout was largely abandoned in the early 1990s, the proportion of sea trout of domestic origin was only 8.5%. Interestingly, for all three regional sea trout groups, virtually no sea trout of

  20. Influence of Genotype and Diet on the Characteristics of Semitendinosus Muscle in Crossbred Young Bulls Derived from Brown Swiss Cow and Double Muscled Bulls

    Directory of Open Access Journals (Sweden)

    Giovanni Bittante

    2013-09-01

    Full Text Available The aim of this study was to evaluate the influence of genotype and diet on the characteristics of muscle fibers and adipocytes of the semitendinosus muscle in crossbred young bulls derived from Brown Swiss cows (B and double-muscled Piemontese (PI or Belgian Blue (BB bulls. For this purpose 24 young bulls divided in 6 groups fed 3 diets have been used: a control diet without supplementation of rumen protected CLA (rpCLA, two other diets added with 8 or 80 g/d of a supplement of rpCLA. The histochemical methods (succinic dehydrogenase and mATPase pointed out the presence of three fiber types: type I, type IIA and type IIX. Results demonstrated that genotype affected both fiber type number and size. While there was no significant difference among the percentages of type I fibers (PI×B 12.73%, BB×B 12.95%, the difference was significant (P<0.05 for IIA fiber type (PI×B 23.03%, BB×B 29.13% and for IIX fiber type (PI×B 64.53%, BB×B 57.84%. All the fiber types of the BB×B genotype had a significantly bigger size (P<0.05 than the fibers of PI×B genotype. The adipocytes analyses showed a significant effect (P<0.05 of genotype on the adipocytes total surface. The level of CLA addition did not affected neither muscle fiber nor adipocytes characteristics.

  1. 77 FR 62500 - Peabody Trout Creek Reservoir LLC; Notice of Intent To File License Application, Filing of Pre...

    Science.gov (United States)

    2012-10-15

    ... Energy Regulatory Commission Peabody Trout Creek Reservoir LLC; Notice of Intent To File License...: Peabody Trout Creek Reservoir LLC. e. Name of Project: Trout Creek Reservoir Hydroelectric Project. f. Location: On Trout Creek, 15 miles southwest of Steamboat Springs, Colorado. The project occupies 4.3...

  2. Evaluation of an Unsuccessful Brook Trout Electrofishing Removal Project in a Small Rocky Mountain Stream.

    Energy Technology Data Exchange (ETDEWEB)

    Meyer, Kevin A.; Lamansky, Jr., James A.; Schill, Daniel J.

    2006-01-26

    In the western United States, exotic brook trout Salvelinus fontinalis frequently have a deleterious effect on native salmonids, and biologists often attempt to remove brook trout from streams by means of electrofishing. Although the success of such projects typically is low, few studies have assessed the underlying mechanisms of failure, especially in terms of compensatory responses. A multiagency watershed advisory group (WAG) conducted a 3-year removal project to reduce brook trout and enhance native salmonids in 7.8 km of a southwestern Idaho stream. We evaluated the costs and success of their project in suppressing brook trout and looked for brook trout compensatory responses, such as decreased natural mortality, increased growth, increased fecundity at length, and earlier maturation. The total number of brook trout removed was 1,401 in 1998, 1,241 in 1999, and 890 in 2000; removal constituted an estimated 88% of the total number of brook trout in the stream in 1999 and 79% in 2000. Although abundance of age-1 and older brook trout declined slightly during and after the removals, abundance of age-0 brook trout increased 789% in the entire stream 2 years after the removals ceased. Total annual survival rate for age-2 and older brook trout did not decrease during the removals, and the removals failed to produce an increase in the abundance of native redband trout Oncorhynchus mykiss gairdneri. Lack of a meaningful decline and unchanged total mortality for older brook trout during the removals suggest that a compensatory response occurred in the brook trout population via reduced natural mortality, which offset the removal of large numbers of brook trout. Although we applaud WAG personnel for their goal of enhancing native salmonids by suppressing brook trout via electrofishing removal, we conclude that their efforts were unsuccessful and suggest that similar future projects elsewhere over such large stream lengths would be costly, quixotic enterprises.

  3. Viimane valik / Malcolm Bull ; tõlk. Märt Väljataga

    Index Scriptorium Estoniae

    Bull, Malcolm

    2006-01-01

    Genotsiidi mõistest ja teostamisest. Rets. rmt.: Michael Mann. The dark side of democracy: explaining ethnic cleansing. Cambridge, 2005; Marc Levene. Genocide in the age of the nation state. Volume I: The meaning of genocide; Volume II: The rise of the West and the coming of genocide. Tauris, 2005. Lisa: Malcolm Bull

  4. HSP90 expression correlation with the freezing resistance of bull sperm.

    Science.gov (United States)

    Wang, Peng; Wang, Yan-Feng; Wang, Hong; Wang, Chun-Wei; Zan, Lin-Sen; Hu, Jian-Hong; Li, Qing-Wang; Jia, Yong-Hong; Ma, Guo-Ji

    2014-05-01

    To date, there has been little improvement in cryopreservation of bull sperm due to lack of understanding of the freezing mechanisms. Therefore, this study set out to investigate expression levels of fertility-associated proteins in bull sperm, and in particular the relationship between the 90 kDa heat-shock protein (HSP90) and the sperm characteristics after freezing-thawing. Semen was collected from eight Holstein bulls by artificial vagina. Characteristics of these fresh semen, including sperm motility, morphology, viability and concentration, were evaluated. Sperm quality was also assessed after freezing-thawing. Eight ejaculates were divided into two groups based on freezing resistance and sperm motility. Sperm proteins were extracted and sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE) analysis and western blotting were performed. SDS-PAGE results showed that there was substantial diversity in 90 kDa proteins in the frozen-thawed sperm and HSP90 was confirmed as one of the 90 kDa proteins by western blot. This study indicated that HSP90 expression correlated positively with sperm quality. The amount of expressed 90 kDa proteins in the high freezing resistance (HFR) group was significantly higher than that in the low freezing resistance (LFR) group (P HSP90 could probably lead to the higher motility and freezing resistance of sperm found after freezing-thawing. Therefore, we concluded that level of HSP90 expression could be used to predict reliably and simply the freezing resistance of bull sperm. PMID:23506739

  5. A feed forward neural network for classification of bull's-eye myocardial perfusion images

    International Nuclear Information System (INIS)

    Identification of hypoperfused areas in myocardial perfusion single-photon emission tomography studies can be aided by bull's-eye representation of raw counts, lesion extent and lesion severity, the latter two being produced by comparison of the raw bull's-eye data with a normal data base. An artificial intelligence technique which is presently becoming widely popular and which is particularly suitable for pattern recognition is that of artificial neural network. We have studied the ability of feed forward neural networks to extract patterns from bull's-eye data by assessing their capability to predict lesion presence without direct comparison with a normal data base. Studies were undertaken on both simulation data and on real stress-rest data obtained from 410 male patients undergoing routine thallium-201 myocardial perfusion scintigraphy. The ability of trained neural networks to predict lesion presence was quantified by calculating the areas under receiver operating characteristic curves. Figures as high as 0.96 for non-preclassified patient data were obtained, corresponding to an accuracy of 92%. The results demonstrate that neural networks can accurately classify patterns from bull's-eye myocardial perfusion images and detect the presence of hypoperfused areas without the need for comparison with a normal data base. Preliminary work suggests that this technique could be used to study perfusion patterns in the myocardium and their correlation with clinical parameters. (orig.)

  6. Evaluation of carcass traits and meat characteristics of Guzerat-crossbred bulls.

    Science.gov (United States)

    Diniz, Frederico B; Villela, Severino D J; Mourthé, Mário H F; Paulino, Pedro V R; Boari, Cleube A; Ribeiro, Julimar S; Barroso, Jorge A; Pires, Aldrin V; Martins, Paulo G M A

    2016-02-01

    Our objective was to evaluate carcass and meat characteristics of Guzerat-crossbred bulls finished in feedlot. Carcasses from 18 bulls, randomly selected from a larger group of 36 bulls, consisting of F1 Guzerat×Holstein ("Guzholstein"); F1 Guzerat×Nellore ("Guzonell"); and 1/2 Simmental+1/4 Guzerat+1/4 Nellore (Three-Cross; n=6 each group) were used. Cold carcass weight was greater (P=0.01) for Three-Cross compared with "Guzonell" and "Guzholstein". Three-Cross carcasses had greater (P0.05) among groups, but depth was greater (P<0.01) for Three-Cross compared with other groups. "Guzholtein" had lesser (P=0.05) shear force compared with "Guzonell", with Three-Cross being intermediate. We conclude that "Guzholstein" is an adequate option for producers willing to finish this kind of genetic group, as it is comparable or better than Bos indicus crosses and B. indicus×Bos taurus bulls. PMID:26546913

  7. Effects of pedigree and exotic genetic inheritance on semen production traits of dairy bulls

    Directory of Open Access Journals (Sweden)

    Vijetha Bajjalli Thippeswamy

    2014-03-01

    Conclusions: It may be inferred that the “acceptable quality semen producing ability” decreased from grandsire through sire to male progeny and among the increasing exotic genetic levels of CB cattle, F1 bulls produced significantly higher “low grade ejaculates” that were unfit for cryopreservation.

  8. Increased conception rates in beef cattle inseminated with nanopurified bull semen

    Science.gov (United States)

    Reproductive performance is of paramount importance to the cattle industry. Since recent progress has been achieved by optimizing estrus and ovulation synchronization protocols in cows, improvements are desired to increase the fertility of bulls enrolled in artificial insemination (AI) programs. Thi...

  9. Candidate causative mutation on BTA18 associated with calving and conformation traits in Holstein bulls

    Science.gov (United States)

    Complementing quantitative methods with sequence data analysis is a major goal of the post-genome era of biology. In this study, we analyzed Illumina HiSeq sequence data derived from 11 US Holstein bulls in order to identify putative causal mutations associated with calving and conformation traits. ...

  10. The use of integer programming to select bulls across breeding companies with volume price discounts.

    Science.gov (United States)

    McConnel, M B; Galligan, D T

    2004-10-01

    Optimization programs are currently used to aid in the selection of bulls to be used in herd breeding programs. While these programs offer a systematic approach to the problem of semen selection, they ignore the impact of volume discounts. Volume discounts are discounts that vary depending on the number of straws purchased. The dynamic nature of volume discounts means that, in order to be adequately accounted for, they must be considered in the optimization routine. Failing to do this creates a missed economic opportunity because the potential benefits of optimally selecting and combining breeding company discount opportunities are not captured. To address these issues, an integer program was created which used binary decision variables to incorporate the effects of quantity discounts into the optimization program. A consistent set of trait criteria was used to select a group of bulls from 3 sample breeding companies. Three different selection programs were used to select the bulls, 2 traditional methods and the integer method. After the discounts were applied using each method, the integer program resulted in the lowest cost portfolio of bulls. A sensitivity analysis showed that the integer program also resulted in a low cost portfolio when the genetic trait goals were changed to be more or less stringent. In the sample application, a net benefit of the new approach over the traditional approaches was a 12.3 to 20.0% savings in semen cost. PMID:15377634

  11. The effect of streptomycin, oxytetracycline, tilmicosin and phenylbutazone on spermatogenesis in bulls.

    OpenAIRE

    Barth, A D; Wood, M R

    1998-01-01

    To determine whether declining semen quality associated with health problems may be due to certain antibiotic or anti-inflammatory treatments, semen was collected 3 times per week for up to 42 d from 6 normal bulls after treatment with oxytetracycline, tilmicosin, dihydrostreptomycin, or phenylbutazone. No adverse effects on semen quality were observed.

  12. Chronological age and breed-type effects on carcass characteristics and palatability of bull beef.

    Science.gov (United States)

    Riley, R R; Smith, G C; Cross, H R; Savell, J W; Long, C R; Cartwright, T C

    1986-01-01

    Bulls (n = 115) of four slaughter ages (9, 12, 15 or 18 months) and of 15 genotypes were studied. In this analysis, each bullock was assigned to one of four breed groups-British and British crosses, Brahman and Brahman crosses. Jersey and Jersey crosses or Holstein and Holstein crosses. Slaughter age had an (P yield grade while breed group had an (P grade. In general, British and British cross bullocks produced carcasses with the thickest subcutaneous fat, the highest marbling score and the highest USDA quality grade while Jersey and Jersey cross bullocks yielded carcasses with the lowest weight, smallest longissimus muscle area and the lowest USDA quality grade of the four breed-type groups. Increases in chronological age (from 9 to 18 months) were generally associated with a decrease in USDA maturity score, and increases in marbling score, USDA quality grade, longissimus muscle area, subcutaneous fat thickness and USDA yield grade. Shear force values decreased as bulls matured from 9 to 18 months of age. The meat from Brahman-type bulls had higher shear force values (P Brahman-type carcasses were assigned the lowest numerical ratings for juiciness. Breed-type had a greater effect on tenderness of bull beef than did chronological age. PMID:22055275

  13. Marketingová strategie firmy Red Bull ČR, s.r.o.

    OpenAIRE

    Janík, Dan

    2008-01-01

    Work consider theoretic information related to marketing strategy and brand marketing. There is description of Red Bull Czech Republic company and its organization in second part of work. In practical part of work is analyze of marketing research about influence of marketing activities and analyze of consumer preferences.

  14. No detection of Besnoitia besnoiti DNA in the semen of chronically infected bulls.

    Science.gov (United States)

    Esteban-Gil, A; Grisez, C; Prevot, F; Florentin, S; Decaudin, A; Picard-Hagen, N; Berthelot, X; Ronsin, P; Alzieu, J P; Marois, M; Corboz, N; Peglion, M; Vilardell, C; Liénard, E; Bouhsira, E; Castillo, J A; Franc, M; Jacquiet, P

    2014-06-01

    Bovine besnoitiosis is a chronic and debilitating disease observed in many European countries that may cause important economic losses in cattle. The recent widespread of the parasite in Europe had led the European Food Safety Authority to declare bovine besnoitiosis as a re-emerging disease in Europe. Many aspects of the epidemiology of bovine besnoitiosis such as the main routes of transmission are still unclear and need to be further studied. Among the different hypotheses, a sexual transmission has not yet been investigated. Therefore, the aim of this study was to evaluate the presence of Besnoitia besnoiti DNA in the semen of naturally infected bulls by using a highly sensitive method (real-time qPCR). Both pre-sperm and sperm fractions of 40 bulls, including seronegative (n = 11), seropositive subclinically (n = 17), and seropositive clinically (n = 12) infected animals, were collected by electroejaculation and analyzed by real-time qPCR. No B. besnoiti DNA was detected in 27 pre-sperm and 28 sperm fractions of the 40 examined bulls, suggesting that the transmission of B. besnoiti infection by the semen of chronically infected bulls is very unlikely. PMID:24802865

  15. Mechanistic identification of cutting force coefficients in bull-nose milling process

    Institute of Scientific and Technical Information of China (English)

    Gao Ge; Wu Baohai; Zhang Dinghua; Luo Ming

    2013-01-01

    An improved method to determine cutting force coefficients for bull-nose cutters is proposed based on the semi-mechanistic cutting force model.Due to variations of cutting speed along the tool axis in bull-nose milling,they affect coefficients significantly and may bring remarkable discrepancies in the prediction of cutting forces.Firstly,the bull-nose cutter is regarded as a finite number of axial discs piled up along the tool axis,and the rigid cutting force model is exerted.Then through discretization along cutting edges,the cutting force related to each element is recalculated,which equals to differential force value between the current and previous elements.In addition,coefficient identification adopts the cubic polynomial fitting method with the slice elevation as its horizontal axis.By calculating relations of cutting speed and cutting depth,the influences of speed variations on cutting force can be derived.Thereby,several tests are conducted to calibrate the coefficients using the improved method,which are applied to later force predictions.Eventually,experimental evaluations are discussed to verify the effectiveness.Compared to the conventional method,the results are more accurate and show satisfactory consistency with the simulations.For further applications,the method is instructive to predict the cutting forces in bull-nose milling with lead or tilt angles and can be extended to the selection of cutting parameters.

  16. Body composition and deposition efficiency of protein and energy in grazing young bulls

    Directory of Open Access Journals (Sweden)

    Eriton Egidio Lisboa Valente

    2014-05-01

    Full Text Available The effects of supplementation with different protein: carbohydrate ratios on body composition, carcass characteristics and protein and energy deposition efficiency of young were assessed. Twenty-four Nellorecalves (132.5 ± 5.5 kgand 90-150 days of age were kept on pasture for a 430 day experimental period. The treatments were: Control = mineral mixture only; HPHC = high-protein and high-carbohydrate supplement; HPLC = high-protein and low-carbohydrate supplement; LPHC = low-protein and high-carbohydrate supplement; LPLC = low-protein and low-carbohydrate supplement. Four animals at begning and 20 animal at end of experiment were slaughtered to evaluate the carcass composition. Control bulls had the lowest (p 0.05 between supplemented bulls (13 Mcal day-1. Although non-supplemented bulls had less (p 0.05 between supplemented bulls. High-carbohydrate supplements were associated with more (p 0.05 in the energy efficiency between the groups. Therefore, supplementation increases the intake and retention of protein and energy without changing the retention efficiency.

  17. EFFECT OF ANTIBIOTICS IN EXTENDER ON FERTILITY OF LIQUID BUFFALO BULL SEMEN

    Directory of Open Access Journals (Sweden)

    S. AKHTER, M. SAJJAD, S. M. H. ANDRABI1, N. ULLAH1 AND M. QAYYUM

    2007-01-01

    Full Text Available This study was carried out to determine if a new antibiotic combination comprising of gentamycin, tylosin and linco-spectin (GTLS in extender is suitable for improvement in fertility of liquid buffalo bull semen through artificial insemination (AI. Two consecutive ejaculates per week (4 weeks were collected from three Nili-Ravi buffalo bulls of known fertility by using artificial vagina. The pooled ejaculates were split-sampled and diluted with skimmed milk extender (37oC; 10x106 motile spermatozoa/ml containing either SP (streptomycin 1000 μg/ml and penicillin 1000 iu/ml or GTLS (gentamycin 500 μg/ml, tylosin 100 μg/ml, lincomycin 300 μg/ml, and spectinomycin 600 μg/ml. Liquid semen was stored at 5°C for seven days. Fertility, based on 90-days first service pregnancy rate, was determined under field conditions. The fertility rates for SP-based vs. GTLS-containing liquid semen of buffalo bull were 58.55 and 60.00%, respectively, the difference was non significant. The fertility rates also did not differ (P>0.05 due to antibiotics at different days of storage of liquid semen at 5oC. In conclusion, GTLS, in skimmed milk extender compared to SP, did not significantly improve the fertility of chilled buffalo bull semen.

  18. On the occurrence of the Bull Ray Pteromylaeus bovinus (Chondrichthyes: Myliobatidae in the Amvrakikos Gulf, Greece

    Directory of Open Access Journals (Sweden)

    S. ZOGARIS

    2012-12-01

    Full Text Available We document in this note the occurrence of the Bull Ray Pteromylaeus bovinus (Geoffroy St-Hilaire, 1817 (Chondrichthyes: Myliobatidae in the Amvrakikos Gulf (eastern Ionian Sea, within a recently designated Wetlands National Park. Although distributional data for this species are scant, there is circumstantial evidence depicting the species as rare in Greece and the Mediterranean.

  19. BIOMASS AND DENSITY OF BROWN AND RAINBOW TROUT IN NEW MEXICO STREAMS

    OpenAIRE

    Srečko Lainer

    1995-01-01

    Mean stream numerical density of the brown trout (Salmo trutta m. fario Linnaeus, 1758) and the rainbow trout (Onchorhynchus mykiss Walbaum, 1792) was 0.090 fish/m2 of which brown trout averaged 69% (72% in total biomass) in 15 high-elevation New Mexico streams (1,661-2,560 m above sea level). Total trout density varied from 0.008/m2 in 1988 and 1989. Mean trout density ranged between 0.023-0.121 fish/m2 at site s open to public fishing. Considerably higher densities (0.142-0.409 fish/m2) wer...

  20. Effects of Basella alba and Hibiscus macranthus extracts on testosterone production of adult rat and bull Leydig cells

    Institute of Scientific and Technical Information of China (English)

    Paul F. Moundipa; Nathalie Sara E. Beboy; Fabien Zelefack; Silvère Ngouela; Etienne Tsamo; Wolf-Bernhard Schill; Thomas K. Monsees

    2005-01-01

    Aim: To determine the androgenic effects of Basella alba and Hibiscus macranthus extracts in the rat and the bull,and to develop a novel in vitro test system using Leydig cells from bull testes. Methods: The effect of methanol extracts from both plants on testosterone production in isolated Leydig cells from the rat and the bull was analyzed using 125I-radioimmunoassay (125I-RIA). Rat Leydig cells were obtained by common methods, whereas a novel technique was used to purify Leydig cells from bull testes. Results: Bull testes from the slaughter house were a cheap source of pure Leydig cells. In culture, these cells produced testosterone for 5-6 days, which can be stimulated by human chorionic gonadotrophin (hCG). Basella alba extracts significantly enhanced testosterone production in bull and rat Leydig cells in a concentration-dependent manner. Hibiscus macranthus showed no androgenic effect but was shown to inhibit testosterone production at higher concentrations. Conclusion: Leydig cells purified from bull testes can be used as an alternative tool in experimental animal research. Certain fractions of Basella alba extract demonstrated androgenic potential whereas Hibiscus macranthus extracts did not.

  1. Laboratory diagnosis and transmissibility of bovine viral diarrhea virus from a bull with a persistent testicular infection.

    Science.gov (United States)

    Newcomer, Benjamin W; Toohey-Kurth, Kathy; Zhang, Yan; Brodersen, Bruce W; Marley, M Shonda; Joiner, Kellye S; Zhang, Yijing; Galik, Patricia K; Riddell, Kay P; Givens, M Daniel

    2014-06-01

    Recently, in the United States, a dairy bull was diagnosed as the second confirmed case of persistent testicular infection (PTI) with bovine viral diarrhea virus (BVDV). The first objective of this study was to evaluate the testing methodologies currently used by the artificial insemination industry in order to improve the detection of bulls with PTI. This study evaluated the impact of multiple factors ([1] sample tested, [2] sample handling, [3] assay used, and [4] assay methodology) on the sensitivity of detection of BVDV. The second objective of this study was to evaluate the transmissibility of BVDV from the bull through casual or sexual contact. Results from this study indicate that straws of semen should be transported to the diagnostic laboratory in liquid nitrogen dry shippers. PCR proved to be a more sensitive assay than virus isolation; however, certain PCR protocols exhibited greater diagnostic sensitivity than others. Insemination with cryopreserved semen from this infected bull caused viral transmission to a seronegative heifer resulting in viremia and seroconversion. After 42 months of age, the bull appeared to clear the infection. In conclusion, this bull validates that natural exposure to a 1a strain of BVDV can result in a unique PTI causing contamination of semen with detectable infectious virus. Appropriate handling and testing of samples is necessary in order to detect bulls exhibiting PTI. Additionally, PTI with BVDV may potentially be cleared after an extended duration. PMID:24656648

  2. Breeding soundness evaluations of 3,648 yearling beef bulls using the 1993 Society for Theriogenology guidelines.

    Science.gov (United States)

    Kennedy, S P; Spitzer, J C; Hopkins, F M; Higdon, H L; Bridges, W C

    2002-09-01

    Our objective was to perform a retrospective analysis of breeding soundness evaluations (BSEs) as classified by the 1993 Society for Theriogenology (SFT) guidelines [Chenoweth et al., Guidelines for using the bull breeding soundness evaluation form, in: Theriogenology Handbook, 1993, pp. B-10]. Data included BSE information obtained from five performance-testing stations in South Carolina (SC1, SC2, SC3) and Tennessee (TN1, TN2) from 1986 through 1999 on 3648 Angus, Brangus, Charolais, Chianina, Gelbvieh, Limousin, Polled Hereford, Santa Gertrudis, Simbrah, and Simmental bulls. Analyses were simplified by classifying all bulls as either satisfactory or unsatisfactory potential breeders. Of the 3648 bulls evaluated, 76.2% were classified as satisfactory potential breeders. Of all bulls evaluated, 4.0% were unsatisfactory due to inadequate spermatozoal motility, 7.0% due to inadequate spermatozoal morphology and 2.6% due to a combination of inadequate motility and morphology. Unsatisfactory classifications due to non-spermatozoal parameters out of all bulls were 10.2%, with 7.1% for inadequate scrotal circumference and 3.1% for physical abnormalities. For satisfactory and unsatisfactory bulls, respectively, means and standard deviations were 35.8 +/- 2.7 and 33.0 +/- 4.1 cm (P < 0.001) for scrotal circumference, 63 +/- 18 and 35 +/- 24% (P < 0.001) for percent motility, and 86 +/- 7 and 63 +/- 21% (P < 0.001) for percent normal morphology. PMID:12212894

  3. Estimating the long-term effects of stocking domesticated trout into wild brown trout ( Salmo trutta ) populations : an approach using microsatellite DNA analysis of historical and contemporary samples

    DEFF Research Database (Denmark)

    Hansen, Michael Møller

    2002-01-01

    Indigenous salmonid fish gene pools are affected by domesticated conspecifics, derived from aquaculture escapes and deliberate releases. Variability was examined at nine microsatellite loci in order to assess the long-term impact of stocking domesticated trout in two brown trout populations. The ...... of stocked trout, could explain the observed introgression. Few nonadmixed individuals remained in the introgressed population, and I discuss how individual admixture analysis can be used to identify and conserve nonintrogressed remains of the population....... study was based on analysis of two historical samples (194556), represented by old scale collections, and seven contemporary samples (1986-2000). In one population historical and contemporary samples were remarkably genetically similar despite more than a decade of intense stocking. Estimation of...... admixture proportions showed a small genetic contribution from domesticated trout (approximately 6%), and individual admixture analysis demonstrated a majority of nonadmixed individuals. The expected genetic contribution by domesticated trout was 64%, assessed from the number of stocked trout and assuming...

  4. Comparison of the macroparasite communities of stocked and wild trout (Salmo trutta) from the West of Ireland

    OpenAIRE

    HOLLAND, CELIA

    2002-01-01

    PUBLISHED The aim of the present study was to compare the helminth infra and component communities of wild and stocked brown trout in Lough Feeagh, in the west of Ireland, and also to examine the establishment and development of helminth communities in stocked brown trout. Fish were sampled in May, August and November 1997 and 1998 and an additional sample of wild brown trout was examined in April 1997. In total 217 wild trout and 122 stocked trout were examined. The acanthocephalans Acant...

  5. Evidence of salmon lice-induced mortality of anadromous brown trout (Salmo trutta) in the Hardangerfjord, Norway

    OpenAIRE

    Skaala, Øystein; Kålås, Steinar; Borgstrøm, Reidar

    2013-01-01

    The Hardangerfjord, western Norway, is an area with a high concentration of salmon farms, high levels of infection of salmon lice in anadromous brown trout, and declining trout populations. This study assessed the marine survival rate of anadromous trout from the River Guddalselva, in the central part of the fjord, and tested the hypothesis that trout populations in this area are depressed by salmon lice infection. From 2001 to 2011, all descending smolts and trout returning from the fjord we...

  6. Carcass Composition and Cuts of Bulls and Steers Fed with Three Concentrate Levels in the Diets.

    Science.gov (United States)

    do Prado, Ivanor Nunes; Passetti, Rodrigo Augusto Cortêz; Rivaroli, Dayane Cristina; Ornaghi, Mariana Garcia; de Souza, Kennyson Alves; Carvalho, Camila Barbosa; Perotto, Daniel; Moletta, José Luiz

    2015-09-01

    In this paper, weight, carcass dressing, weights of the primary cuts, weights of the physical components of the primary cuts, and weights of the main commercial cuts of 66 Purunã animals, of which 33 were bulls and 33 were steers were evaluated. These animals, with an average age of 19 months at the beginning of the experiment, were finished in a feedlot system during 116 days, and were fed with diets containing three levels of concentrate (0.8%, 1.1%, and 1.4% of body weight). The concentrate was formulated with 25% soybean meal, 73% ground corn grain, 1% of a mineral mix, and 1% of limestone. The interaction between sexual groups and the concentrate level was not significant for any of the variables. Likewise, no effect of the concentrate level was detected on the same variable traits. The bulls demonstrated higher hot carcass weights (265.1 vs 221.7 kg) and a higher proportion of forequarter (38.4% vs 36.1%) however the steers presented with higher proportions of side (19.7% vs 18.5%) and hindquarter (44.2% vs 43.1%). The bulls produced higher yields of muscle in the three primary cuts, there by resulting in higher yields of edible portions of the carcass. The bulls also produced higher weights of tenderloin, knuckle, topside, flat, eye round, rump, and rump cover. The finishing of young bulls in feedlot is to be recommended, since the animals produce carcasses with higher amounts of edible meat and higher yields of commercial cuts, thus allowing for a better price for the carcass. Low concentrate level could be used due to the lower cost of production for farmers. PMID:26194216

  7. Growth and muscle development characteristics of purebred Angus and Brahman bulls.

    Science.gov (United States)

    Solomon, M B; West, R L; Hentges, J F

    1986-01-01

    Thirty-eight purebred bulls (10 to 17 mo of age) were used to determine the effects of breed (Angus or Brahman) and slaughter weight (60, 80, 90 or 100% of the average mature dam's weight for the respective breed) on growth and muscle development characteristics. Angus bulls grazed summer forage after weaning whereas Brahman bulls were fed to simulate gains achieved on forage by Angus. Bulls were then placed in a confinement feedlot for finishing to their appropriate slaughter weight (293, 369, 411, and 469 kg for Angus and 307, 427, 464 and 520 kg for Brahman). No major differences due to breed were found for predicted carcass composition. The LD muscle from Brahman bulls contained more total DNA (2.27 v. 1.19 g), more total protein (768.22 v. 593.59 g) and generally less total lipid (70.56 v. 101.26 g) when expressed on a total muscle (wet tissue) basis. The percentages and areas for all three muscle fiber types were not affected by breed. As carcass weight increased, muscle weights, total protein, lipid, protein:DNA and muscle fiber size for the three fiber types increased. Total DNA content increased only up to the 90% weight group and then leveled off. The percentage of alpha R fibers decreased while the percentage of alpha W fibers increased with increasing carcass weight. These data suggest that slaughtering animals based on a percentage of their dam's mature weight seems to be a practical method for making comparisons of animals on an equivalent compositional basis. Moreover, it appears that histochemical and biochemical evaluations of skeletal muscle can successfully identify what point in the growth cycle an animal is in. PMID:3732867

  8. Admixture analysis of stocked brown trout populations using mapped microsatellite DNA markers: indigenous trout persist in introgressed populations.

    Science.gov (United States)

    Hansen, Michael M; Mensberg, Karen-Lise D

    2009-10-23

    Admixture between wild and captive populations is an increasing concern in conservation biology. Understanding the extent of admixture and the processes involved requires identification of admixed and non-admixed individuals. This can be achieved by statistical methods employing Bayesian clustering, but resolution is low if genetic differentiation is weak. Here, we analyse stocked brown trout populations represented by historical (1943-1956) and contemporary (2000s) samples, where genetic differentiation between wild populations and stocked trout is weak (pairwise F(ST) of 0.047 and 0.053). By analysing a high number of microsatellite DNA markers (50) and making use of linkage map information, we achieve clear identification of admixed and non-admixed trout. Moreover, despite strong population-level admixture by hatchery strain trout in one of the populations (70.8%), non-admixed individuals nevertheless persist (7 out of 53 individuals). These remnants of the indigenous population are characterized by later spawning time than the majority of the admixed individuals. We hypothesize that isolation by time mediated by spawning time differences between wild and hatchery strain trout is a major factor rescuing a part of the indigenous population from introgression. PMID:19515653

  9. Ultrastructural changes in the hepatocytes of juvenile rainbow trout and mature brown trout exposed to copper or zinc

    Science.gov (United States)

    Leland, H.V.

    1983-01-01

    Morphological changes in hepatocytes of mature brown trout (Salmo trutta Linnaeus) and juvenile rainbow trout (Salmo gairdneri Richardson), accompanying chronic exposures to copper and zinc, were examined by transmission electron microscopy. At a concentration of copper not inhibitory to the final stages of gonadal development or spawning of brown trout, structural alterations included contraction of mitochondria and a tendency for nuclei to be slightly enlarged. Concentrations of copper or zinc lethal to a small fraction (10% and 4%, respectively) of a population of juvenile rainbow trout exposed for 42 d during larval and early juvenile development caused hepatocyte changes in survivors indicative of a reduction in ability to maintain intracellular water and cation balance and possible intranuclear metal sequestering. Specific structural alterations included increased vesiculation of rough endoplasmic reticulum, an increase in the abundance of electron-dense particles in the nucleus, increases in the numbers of multilaminar and globular inclusions, pooling of glycogen, increased autophagocytic activity and an increase in the number of necrotic cells. At advanced stages of toxicosis (concentrations of copper or zinc lethal to approximately 50% of the juveniles exposed for 42 d during development), loss in integrity of mitochondrial membranes, rupturing of plasma and nuclear membranes, separation of granular and fibrillar nuclear components, fragmentation of endoplasmic reticulum, and extensive autophagic vacuolization were significant features of hepatocytes of surviving juvenile rainbow trout. ?? 1983.

  10. THE EFFECT OF THE SECOND GRAZING PERIOD ON THE FATTY ACID COMPOSITION IN MEAT OF INDIGENOUS CIKA AND SIMMENTAL BULLS

    Directory of Open Access Journals (Sweden)

    Mojca Voljč

    2015-09-01

    Full Text Available The aim of the study was to determine fatty acid composition in meat of Cika and Simmental bulls from two different fattening technologies. The herd of 39 young bulls was housed during the winter time and fed the same total mixed ration diet (TMR based on corn and grass silage with a limited amount of concentrates. In the spring bulls of both breeds were divided into two subgroups. Bulls in the first subgroup (10 Cika, 9 Simmental; S-INT were fattened indoors with the semi-intensive TMR. Bulls in the second subgroup (10 Cika, 10 Simmental; G+S-INT were put on all-day grazing in the pasture. After grazing period bulls were housed under the same conditions as the first subgroup. Samples of M. longissimus dorsi were collected from the right carcass side to determine the total fat content and the fatty acid composition. The breed significantly influenced fatty acid composition in meat. The beef of Simmental bulls resulted in higher percentage of PUFA and lower percentage of SFA and MUFA. Higher percentage of n-3 and n-6 PUFA was determined in meat of Simmental bulls but the n-6/n-3 ratio was lower in Cika bulls meat. The fattening technology had less effect on FA composition in meat. The second grazing period produced higher percentage of SFA, beneficially lower values of n-6/n-3 ratio and higher values of long-chain C20-22n-3 PUFA. Higher CLA percentage was determined in beef from S-INT group.

  11. A comparison of spatial and movement patterns between sympatric predators: bull sharks (Carcharhinus leucas and Atlantic tarpon (Megalops atlanticus.

    Directory of Open Access Journals (Sweden)

    Neil Hammerschlag

    Full Text Available BACKGROUND: Predators can impact ecosystems through trophic cascades such that differential patterns in habitat use can lead to spatiotemporal variation in top down forcing on community dynamics. Thus, improved understanding of predator movements is important for evaluating the potential ecosystem effects of their declines. METHODOLOGY/PRINCIPAL FINDINGS: We satellite-tagged an apex predator (bull sharks, Carcharhinus leucas and a sympatric mesopredator (Atlantic tarpon, Megalops atlanticus in southern Florida waters to describe their habitat use, abundance and movement patterns. We asked four questions: (1 How do the seasonal abundance patterns of bull sharks and tarpon compare? (2 How do the movement patterns of bull sharks and tarpon compare, and what proportion of time do their respective primary ranges overlap? (3 Do tarpon movement patterns (e.g., straight versus convoluted paths and/or their rates of movement (ROM differ in areas of low versus high bull shark abundance? and (4 Can any general conclusions be reached concerning whether tarpon may mitigate risk of predation by sharks when they are in areas of high bull shark abundance? CONCLUSIONS/SIGNIFICANCE: Despite similarities in diet, bull sharks and tarpon showed little overlap in habitat use. Bull shark abundance was high year-round, but peaked in winter; while tarpon abundance and fishery catches were highest in late spring. However, presence of the largest sharks (>230 cm coincided with peak tarpon abundance. When moving over deep open waters (areas of high shark abundance and high food availability tarpon maintained relatively high ROM in directed lines until reaching shallow structurally-complex areas. At such locations, tarpon exhibited slow tortuous movements over relatively long time periods indicative of foraging. Tarpon periodically concentrated up rivers, where tracked bull sharks were absent. We propose that tarpon trade-off energetic costs of both food assimilation and

  12. Fat content of the flesh of siscowets and lake trout from Lake Superior

    Science.gov (United States)

    Eschmeyer, Paul H.; Phillips, Arthur M., Jr.

    1965-01-01

    Samples of flesh were excised from the middorsal region of 67 siscowets (Salvelinus namaycush siscowet) and 46 lake trout (Salvelinus n. namaycush) collected from Lake Superior. Chemical analysis of the samples revealed a range in fat content (dry weight) of 32.5 to 88.8 per cent in siscowets and 6.6 to 52.3 per cent in lake trout. Percentage fat increased progressively with increase in length of fish in both forms, but the average rate of increase was far greater for siscowets than for lake trout at lengths between 12 and 20 inches. Despite substantial individual variation, the percentage fat in the two forms was widely different and without overlap at all comparable lengths. The range in iodine number of the fat was 100 to 160 for siscowets and 103 to 161 for lake trout; average values were generally lower for siscowets than for lake trout among fish of comparable length. Percentage fat and relative weight were not correlated significantly in either subspecies. The fat content of flesh samples from a distinctive subpopulation of Lake Superior lake trout known as 'humpers' was more closely similar to that of typical lean lake trout than to siscowets, but the rate of increase in fat with increasing length was greater than for lean lake trout. Flesh samples from hatchery-reared stocks of lake trout, hybrid lake trout X siscowets, and siscowets tended to support the view that the wide difference in fat content between siscowets and lake trout is genetically determined.

  13. Radiocaesium turnover in Arctic charr (Salvelinus alpinus) and brown trout (Salmo trutta) in a Norwegian lake

    International Nuclear Information System (INIS)

    The radioactivity of brown trout (Salmo trutta L.) and Arctic charr (Salvelinus alpinus (L.)) was monitored in a Norwegian lake from 1986 to 1989. A distinct difference was observed between brown trout and Arctic charr in the accumulation of radiocaesium (134Cs and 137Cs) from the Chernobyl fallout, and the study focused on the understanding of this difference. Brown trout had a large food consumption and a corresponding high intake of radiocaesium. Excretion was 20% faster in brown trout than Arctic charr as brown trout lived at high temperatures in epilimnic water. Arctic charr had a lower food consumption (less than one-third of trout) and lived in colder meta-and hypolimnic water. Arctic charr therefore had a lower intake and slower excretion of radiocaesium. Brown trout an Arctic charr had different diets. For brown trout zoobenthos was the dominant food item, whereas Artic charr mainly fed on zooplankton. The radioactivity in the stomach contents of the two species was different in 1986, but similar for the rest of the period. Higher levels of radiocaesium in brown trout than Arctic charr in 1986 were due to a higher food consumption and more radioactive food items in its diet. The parallel development in accumulated radiocaesium through summer 1987 was probably formed by brown trout balancing a higher intake with a faster excretion. The ecological half-lives of radiocaesium in brown trout (357 days) and Arctic charr (550 days) from Lake Hoeysjoeen indicated a slow removal of the isotopes from the food webs. (author)

  14. Immunity to rhabdoviruses in rainbow trout: the antibody response

    DEFF Research Database (Denmark)

    Lorenzen, Niels; Lapatra, S.E.

    1999-01-01

    detail so far. Analysis of the specificity of anti-virus trout antibodies has been complicated by a generally insufficient ability of the antibodies to bind the viral proteins in assays such as immunoblotting. However, other assays, specifically designed for detection of fish anti IHNV/VHSV antibodies...... occasional detrimental effect on rainbow trout farming. Research efforts have been focused on understanding the mechanisms involved in protective immunity. Several specific and nonspecific cellular and humoral parameters are believed to be involved, but only the antibody response has been characterised in......, have demonstrated that rainbow trout can produce specific and highly functional antibodies that are able to neutralise virus pathogenicity in vitro as well as in vivo. The apparently more restricted antibody response to IHNV and VHSV antigens in fish compared to mammals could possibly be explained by...

  15. Organic contaminants in thermal plume resident brown trout

    International Nuclear Information System (INIS)

    A pilot study was conducted to identify possible contaminants accumulated by thermal plume-resident fish in Lake Michigan. Brown trout were maintained in tanks receiving intake and discharge (less than or equal to 210C) water from a power plant and were fed a diet of frozen alewife. Fish were sampled over a period of 127 days in order to estimate uptake rates and equilibrium levels for toxic organic and inorganic materials occurring in Lake Michigan fish and water. Experimental fish and natural samples were analyzed to determine the distribution of contaminants in various tissues and the corresponding pollutant levels in similar size brown trout from Lake Michigan. The quantitative analyses for the major organic contaminants are summarized. Without exception, the pyloric caecum of brown trout contained the highest concentration of lipids, PCB's, and chlorinated pesticides. Gill and kidney samples contained lower concentrations of contaminants than the caecum, while liver and muscle values were lowest

  16. Marine Model Trout Farms: developments in marine RAS

    DEFF Research Database (Denmark)

    Pedersen, Per Bovbjerg

    2011-01-01

    . This development and demonstration unit in commercial scale will during the next four years hopefully provide scientific and practical basis and support for further development in coming generations of Marine Model Trout Farms for large salmonids. The unit consist in the recirculation loop of one large......Economical and environmentally sustainable production of large salmonids in sea water has in Denmark been called for during some years. Based on the experience gained from the Danish Model Trout Farms in freshwater, a rather similar concept has been developed for farming of larger fish in sea water...... operation production will be focussed on rainbow trout production, mimicking the typical Danish net cage farming cycle, where the cages are stocked with fish of 750 – 1,000 g in April/May and all harvested before Christmas weighing some 4 kg/pcs. During these two years important production parameters such...

  17. Life+ Trout Project (LIFE12 NAT/IT/0000940) for the recovery and conservation of Mediterranean trout (Salmo trutta complex) in the central Apennines (Italy).

    OpenAIRE

    Vincenzo Caputo Barucchi; Antonella Carosi

    2015-01-01

    The Mediterranean brown trout (Salmo trutta complex) is one of the freshwater fish species complex at greater risk of extinction in the Mediterranean area. The introduction of alien invasive species and their interaction with the native fauna represent some of the major threats to the survival of this species (Caputo et al., 2004). Currently, the genetic integrity of the Mediterranean trout is being compromised by the introgressive hybridization with the Atlantic trout. This hybridization, wh...

  18. Movement Patterns and Multi-Scale Factors That Influence Exotic Brook Trout And Endemic Bonneville Cutthroat Trout Distribution And Abundance In The Mill Creek Drainage, Utah

    OpenAIRE

    Nadolski, Benjamin Keith

    2008-01-01

    Introduced brook trout (Salvelinus fontinalis) are implicated as a primary factor leading to the decline in distribution and abundance of native cutthroat trout (Oncorhynchus clarkii). However, not all introductions are successful, suggesting local conditions influence the success of invasions. Therefore, I sought to determine the multi-scale factor(s) that influence brook trouts’ invasion success of native Bonneville cutthroat trout (Oncorhynchus clarkii utah) habitats in Mill Creek, Utah. I...

  19. Chromosome rearrangements, recombination suppression, and limited segregation distortion in hybrids between Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri) and rainbow trout (O. mykiss)

    OpenAIRE

    Carl O Ostberg; Hauser, Lorenz; Pritchard, Victoria L; Garza, John C; Naish, Kerry A.

    2013-01-01

    Background Introgressive hybridization is an important evolutionary process that can lead to the creation of novel genome structures and thus potentially new genetic variation for selection to act upon. On the other hand, hybridization with introduced species can threaten native species, such as cutthroat trout (Oncorhynchus clarkii) following the introduction of rainbow trout (O. mykiss). Neither the evolutionary consequences nor conservation implications of rainbow trout introgression in cu...

  20. Utilisation of brown trout by Acanthocephalus clavula (Acanthocephala) in brown trout (Salmo trutta) in an Irish lake: is this evidence of a host shift?

    OpenAIRE

    HOLLAND, CELIA

    2004-01-01

    PUBLISHED The population biology of the fish acanthocephalan Acanthocephalus clavula was described from 161 wild brown trout, Salmo trutta sampled over a two-year period in Clogher Lake in the west of Ireland. Overall prevalence of the parasite was 86% and the mean abundance was 53 worms per fish. Despite the presence of large numbers of worms in the trout very few females (2%) attained full reproductive maturity. This suggests that trout is an accidental host. A sample of yellow eels, Ang...

  1. Lake trout demographics in relation to burbot and coregonine populations in the Algonquin Highlands, Ontario

    Science.gov (United States)

    Carl, L.M.

    2008-01-01

    The objective of the study was to test the hypothesis that lake trout populations change in relation to cisco, lake whitefish, round whitefish and burbot populations in lakes in the Algonquin Highlands region of Ontario. Lake trout population change is greatest where cisco and lake whitefish are present. Lake trout populations in lakes without either coregonine tend to have small adults and many juveniles. Where cisco or lake whitefish are present, adult lake trout are large, juvenile abundance is low, and the stock-recruit relationship appears to be uncoupled likely due to a larval bottleneck. Lake trout populations in these lakes may be sensitive to overfishing and recruitment failure. Lake trout populations do not appear to change in relation to round whitefish. There appears to be an indirect positive change on juvenile lake trout abundance through reductions in the density of benthic coregonines in the presence of large, hypolimnetic burbot. ?? 2007 Springer Science+Business Media B.V.

  2. An insight into the isolation, enumeration and molecular detection of Listeria monocytogenes in food

    Directory of Open Access Journals (Sweden)

    Jodi Woan-Fei Law

    2015-11-01

    Full Text Available Listeria monocytogenes, a foodborne pathogen that can cause listeriosis through the consumption of food contaminated with this pathogen. The ability of L. monocytogenes to survive in extreme conditions and cause food contaminations have become a major concern. Hence, routine microbiological food testing is necessary to prevent food contamination and outbreaks of foodborne illness. This review provides insight into the methods for cultural detection, enumeration and molecular identification of L. monocytogenes in various food samples. There are a number of enrichment and plating media that can be used for the isolation of L. monocytogenes from food samples. Enrichment media such as buffered Listeria Enrichment Broth (BLEB, Fraser broth and University of Vermont Medium (UVM Listeria enrichment broth are recommended by regulatory agencies such as FDA-BAM, USDA-FSIS and ISO. Many plating media are available for the isolation of L. monocytogenes, for instance, PALCAM, Oxford and other chromogenic media. Besides, reference methods like FDA-BAM, ISO 11290 method and USDA-FSIS method are usually applied for the cultural detection or enumeration of L. monocytogenes. MPN technique is applied for the enumeration of L. monocytogenes in the case of low level contamination. Molecular methods including polymerase chain reaction (PCR, multiplex polymerase chain reaction (mPCR, real-time/quantitative polymerase chain reaction (qPCR, nucleic acid sequence-based amplification (NASBA, loop-mediated isothermal amplification (LAMP, DNA microarray and Next Generation Sequencing (NGS technology for the detection and identification of L. monocytogenes are discussed in this review. Overall, molecular methods are rapid, sensitive, specific, time- and labour-saving. In future, there are chances for the development of new techniques for the detection and identification of foodborne with improved features.

  3. A first generation integrated map of the rainbow trout genome

    Directory of Open Access Journals (Sweden)

    Tabet-Canale Kamila

    2011-04-01

    Full Text Available Abstract Background Rainbow trout (Oncorhynchus mykiss are the most-widely cultivated cold freshwater fish in the world and an important model species for many research areas. Coupling great interest in this species as a research model with the need for genetic improvement of aquaculture production efficiency traits justifies the continued development of genomics research resources. Many quantitative trait loci (QTL have been identified for production and life-history traits in rainbow trout. An integrated physical and genetic map is needed to facilitate fine mapping of QTL and the selection of positional candidate genes for incorporation in marker-assisted selection (MAS programs for improving rainbow trout aquaculture production. Results The first generation integrated map of the rainbow trout genome is composed of 238 BAC contigs anchored to chromosomes of the genetic map. It covers more than 10% of the genome across segments from all 29 chromosomes. Anchoring of 203 contigs to chromosomes of the National Center for Cool and Cold Water Aquaculture (NCCCWA genetic map was achieved through mapping of 288 genetic markers derived from BAC end sequences (BES, screening of the BAC library with previously mapped markers and matching of SNPs with BES reads. In addition, 35 contigs were anchored to linkage groups of the INRA (French National Institute of Agricultural Research genetic map through markers that were not informative for linkage analysis in the NCCCWA mapping panel. The ratio of physical to genetic linkage distances varied substantially among chromosomes and BAC contigs with an average of 3,033 Kb/cM. Conclusions The integrated map described here provides a framework for a robust composite genome map for rainbow trout. This resource is needed for genomic analyses in this research model and economically important species and will facilitate comparative genome mapping with other salmonids and with model fish species. This resource will also

  4. Comparative bioenergetics modeling of two Lake Trout morphotypes

    Science.gov (United States)

    Kepler, Megan V.; Wagner, Tyler; Sweka, John A.

    2014-01-01

    Efforts to restore Lake Trout Salvelinus namaycush in the Laurentian Great Lakes have been hampered for decades by several factors, including overfishing and invasive species (e.g., parasitism by Sea Lampreys Petromyzon marinus and reproductive deficiencies associated with consumption of Alewives Alosa pseudoharengus). Restoration efforts are complicated by the presence of multiple body forms (i.e., morphotypes) of Lake Trout that differ in habitat utilization, prey consumption, lipid storage, and spawning preferences. Bioenergetics models constitute one tool that is used to help inform management and restoration decisions; however, bioenergetic differences among morphotypes have not been evaluated. The goal of this research was to investigate bioenergetic differences between two actively stocked morphotypes: lean and humper Lake Trout. We measured consumption and respiration rates across a wide range of temperatures (4–22°C) and size-classes (5–100 g) to develop bioenergetics models for juvenile Lake Trout. Bayesian estimation was used so that uncertainty could be propagated through final growth predictions. Differences between morphotypes were minimal, but when present, the differences were temperature and weight dependent. Basal respiration did not differ between morphotypes at any temperature or size-class. When growth and consumption differed between morphotypes, the differences were not consistent across the size ranges tested. Management scenarios utilizing the temperatures presently found in the Great Lakes (e.g., predicted growth at an average temperature of 11.7°C and 14.4°C during a 30-d period) demonstrated no difference in growth between the two morphotypes. Due to a lack of consistent differences between lean and humper Lake Trout, we developed a model that combined data from both morphotypes. The combined model yielded results similar to those of the morphotype-specific models, suggesting that accounting for morphotype differences may

  5. BACTERIAL FLORA OF RAINBOW TROUT LARVAE AND FRY (ONCORHYNCHUS MYKISS

    Directory of Open Access Journals (Sweden)

    Damir Kapetanović

    2003-09-01

    Full Text Available There are no information in available literature about the structure of bacterial flora in rainbow trout larvae and fry in the first days of their lives. The objective of our work has been to follow bacteroflora between the third and the eighth week of their lives. During 35 days of experiment bacteroflora of rainbow trout has been examined, along with following physico–chemical characteristics of water quality as well as it’s influence on health. Samples for bacteriological examination were taken from gill, heart and kidney areas and innoculated on the plates. Bacterial colonies were examined macroscopically, slides with Gram staining, and afterwords biochemical tests were performed. For identification, APILAB Plus programme (bio Mérieux, France was used. Bacterial population of rainbow trout larvae and fry changed in dependence with their age. Physico–chemical characteristics of water ranged within optimal values. Most of bacterial colonies originated from gill isolates (64,4 %, than from heart (21,8 % and kidney areas (13,8 %. The bacterial flora of larvae in incubator was composed mostly of Gram–positive bacteria (75,1 %, genera: Renibacterium (25 %, Lactobacillus (16,7 %, Staphilococcus (16,7 % and Corynebacterium (16,7 %. The transfer of larvae from incubator into the pools resulted in reducing bacterial flora (–66,7 % after 45 minute stay in the pool. Gram–negative bacteria, which have been represented in larvae in incubator with low percent (24, 9 %, after the transfer of larvae to the pools became dominant and represented more than 95 % of rainbow trout larvae and fry bacterial flora. Flavobacterium, Acinetobacter and Yersinia were the predominant Gram–negative genera in larvae in incubator, whereas Aeromonas, Pseudomonas, Flavobacterium and Pasteurella were the main isolates from rainbow trout larvae and fry until the end of experiment. Bacterial flora of larvae in incubator mostly consists of Gram–positive bacteria

  6. Effect of supplementation of butylated hydroxytoluene on post-thaw sperm viability, motility and membrane integrity of Hariana bulls

    OpenAIRE

    Akhil Patel; Atul Saxena; Dilip Kumar Swain; Dushyant Yadav; Sanjay Singh Yadav; Abhishek Kumar; Anuj Kumar

    2015-01-01

    Aim: This study was aimed to see the beneficial effect of butylated hydroxytoluene (BHT) as a semen additive of Hariana bull semen. Materials and Methods: The study was carried out in Hariana bulls. Twenty-four ejaculates from two bulls were used for this study. Each ejaculate was extended with standard glycerolated egg yolk tris extender and supplemented with BHT at two concentrations as 0.5 mM (T1) and 1.0 mM (T2). After dilution, equilibration and 24 h of cryopreservation, the samples w...

  7. Effect of supplementation of feed with Flaxseed (Linumusitatisimum) oil on libido and semen quality of Nilli-Ravi buffalo bulls

    OpenAIRE

    Shah, Syed Mazhar Hussain; Ali, Shujait; Zubair, Muhammad; Jamil, Huma; Ahmad, Nazir

    2016-01-01

    Background The current study was designed to investigate the effect of supplementation of Flaxseed (Linumusitatisimum) oil on libido and semen quality of Nilli-Ravi buffalo bulls. Methods In this study, 12 adult healthy bulls kept at the Semen Production Unit, Qadirabad district Sahiwal, were used. These bulls were divided into three equal groups, A, B and C. Group A was kept as control, while in groups B and C supplementation of feed was provided by using flaxseed oil @125 ml/day and 250 ml/...

  8. Simultaneous enumeration of diatom, protozoa and meiobenthos from marine sediments using Ludox-QPS method

    Institute of Scientific and Technical Information of China (English)

    DU Yongfen; XU Kuidong; LEI Yanli

    2009-01-01

    The Ludox-QPS method is a newly developed technique, which combines the Ludox HS 40 density centrifugation and quantitative protargol stain, to enumerate marine ciliates with good taxonomic resolution. We tested the method for simultaneous enumeration of diatoms, protozoa and meiobenthos and compared its extraction efficiency for meiobenthos with that of the routine Ludox-TM centrifugation and a modified protocol using Ludox HS 40. We conducted the evaluation with a sample size of 8.3 ml each from sandy, muddy-sand and muddy sediments collected from the intertidal area of the Yellow Sea in summer 2006 and spring 2007. The Ludox-QPS method not only produced high extraction efficiencies of 97±1.3% for diatoms and 97.6±0.8% for ciliates, indicating a reliable enumeration for eukaryotic microbenthos, but also produced excellent extraction efficiencies of on average 97.3% for total meiobenthos, 97.9% for nematodes and 97.8% for copepods from sands, muddy sands and mud. By contrast, the routine Ludox-TM centrifugation obtained only about 74% of total meiobenthos abundance with one extraction cycle, and the modified Ludox HS 40 centrifugation yielded on average 93% of total meiobenthos: 89.4±2.0% from sands, 93±4.1% from muddy sands and 97.1±3.0% from mud. Apart from the sediment type, sample volume was another important factor affecting the extraction efficiency for meiobenthos. The extraction rate was increased to about 96.4% when using the same modified Ludox centrifugation for a 4 ml sediment sample. Besides the excellent extraction efficiency, the Ludox-QPS method obtained higher abundances of meiobenthos, in particular nematodes, than the routine Ludox centrifugation, which frequently resulted in an uncertain loss of small meiobenthos during the sieving process. Statistical analyses demonstrated that there were no significant differences between the meiobenthos communities revealed by the Ludox-QPS method and the modified Ludox HS 40 centrifugation, showing the

  9. Specific dot-immunobinding assay for detection and enumeration of Thiobacillus ferrooxidans

    International Nuclear Information System (INIS)

    A specific and very sensitive dot-immunobinding assay for the detection and enumeration of the bioleaching microorganism Thiobacillus ferrooxidans was developed. Nitrocellulose spotted with samples was incubated with polyclonal antisera against whole T. ferrooxidans cells and then in 125I-labeled protein A or 125I-labeled goat antirabbit immunoglobulin G; incubation was followed by autoradiography. Since a minimum of 103 cells per dot could be detected, the method offers the possibility of simultaneous processing of numerous samples in a short time to monitor the levels of T. ferrooxidans in bioleaching operations

  10. Coil-globule transition of a single short polymer chain: an exact enumeration study.

    Science.gov (United States)

    Ponmurugan, M; Narasimhan, S L; Krishna, P S R; Murthy, K P N

    2007-04-14

    The authors present an exact enumeration study of short self-avoiding walks in two as well as in three dimensions that addresses the question, "what is the shortest walk for which the existence of all the three scaling regimes--coil, globule, and the theta--could be demonstrated." Even though they could easily demonstrate the coil and the globule phase from free energy considerations, they could demonstrate the existence of a theta temperature only by using a scaling form for the distribution of gyration radius. That even such short walks have a scaling behavior is an unexpected result of this work. PMID:17444742

  11. Godel-Rosser's Incompleteness Theorems for Non-Recursively Enumerable Theories

    OpenAIRE

    Salehi, Saeed; Seraji, Payam

    2015-01-01

    Godel's First Incompleteness Theorem is generalized to definable theories, which are not necessarily recursively enumerable, by using a couple of syntactic-semantic notions; one is the consistency of a theory with the set of all true $\\Pi_n$-sentences or equivalently the $\\Sigma_n$-soundness of the theory, and the other is $n$-consistency the restriction of $\\omega$-consistency to the $\\Sigma_n$-formulas. It is also shown that Rosser's Incompleteness Theorem does not generally hold for defina...

  12. A GPU-based parallel algorithm for enumerating all chordless cycles in graphs

    OpenAIRE

    Dias, Elisângela Silva; Castonguay, Diane; Longo, Humberto; Jradi, Walid Abdala Rfaei; Nascimento, Hugo A. D. do

    2014-01-01

    In a finite undirected simple graph, a chordless cycle is an induced subgraph which is a cycle. We propose a GPU parallel algorithm for enumerating all chordless cycles of such a graph. The algorithm, implemented in OpenCL, is based on a previous sequential algorithm developed by the current authors for the same problem. It uses a more compact data structure for solution representation which is suitable for the memory-size limitation of a GPU. Moreover, for graphs with a sufficiently large am...

  13. Enumeration and stability analysis of simple periodic orbits in β-Fermi Pasta Ulam lattice

    Energy Technology Data Exchange (ETDEWEB)

    Sonone, Rupali L., E-mail: vaidehisonone@gmail.com; Jain, Sudhir R., E-mail: vaidehisonone@gmail.com [Department of Physics, University of Pune, Pune-411007, India and Nuclear Physics Division, Bhabha Atomic Research Centre, Mumbai - 400085 (India)

    2014-04-24

    We study the well-known one-dimensional problem of N particles with a nonlinear interaction. The special case of quadratic and quartic interaction potential among nearest neighbours is the β-Fermi-Pasta-Ulam model. We enumerate and classify the simple periodic orbits for this system and find the stability zones, employing Floquet theory. Such stability analysis is crucial to understand the transition of FPU lattice from recurrences to globally chaotic behavior, energy transport in lower dimensional system, dynamics of optical lattices and also its impact on shape parameter of bio-polymers such as DNA and RNA.

  14. Enumeration of Treponema pallidum Cells Cultivated In Vitro by an Enzyme-Linked Immunosorbent Assay

    OpenAIRE

    Cox, D. L.; Moeckli, R A; Keaney, K M

    1984-01-01

    An enzyme-linked immunosorbent assay was developed to enumerate Treponema pallidum cells. The assay could detect from 2 X 10(7) to 4 X 10(8) treponemes per ml. Reactive rabbit serum and goat anti-rabbit immunoglobulin G (peroxidase conjugate) were used in the assay. Optimum results were obtained when 2,2'-azino-di(ethylbenzthiazolinesulfonic acid) was used as the dye for the enzyme reaction and the reactions were allowed to run for 45 min. Interestingly, assays in which in vivo-cultivated T. ...

  15. Selective breeding provides an approach to increase resistance of rainbow trout ( Onchorhynchus mykiss ) to the diseases, enteric redmouth disease, rainbow trout fry syndrome, and viral haemorrhagic septicaemia

    DEFF Research Database (Denmark)

    Henryon, M.; Berg, P.; Olesen, Niels Jørgen;

    2005-01-01

    In this study, we reasoned that if we challenged rainbow trout with the causative agents of enteric redmouth disease (ERM), rainbow trout fry syndrome (RTFS), and viral haemorrhagic septicaemia (VHS), we would: 1) detect additive genetic variation for resistance to ERM, RTFS, and VHS; and 2) find...... that resistance of the trout to ERM and RTFS are favourably correlated genetically, while resistance to VHS is unfavourably correlated with resistance to ERM and RTFS. We tested these premises by challenging 63 full-sib families of rainbow trout (50 sires, 38 dams) with Yersinia ruckeri, Flavobacterium...

  16. Stocking impact and migration pattern in an anadromous brown trout ( Salmo trutta ) complex: where have all the stocked spawning sea trout gone?

    DEFF Research Database (Denmark)

    Ruzzante, D.E.; Hansen, Michael Møller; Meldrup, Dorte;

    2004-01-01

    that of brown trout collected from 32 tributaries pooled into nine geographical regions (n = 3801) and two hatcheries (n = 222) used for stocking. For each of the three regional sea trout groups (western, central and eastern Limfjord, n = 91, n = 426, n = 329, respectively), MSA was conducted with (i....... These results suggest that stocked domestic brown trout that become anadromous experience high mortality at sea and are therefore largely absent among the larger, spawning individuals. We conclude that sea trout of domestic origin exhibit much reduced ability to reproduce and are unlikely to contribute...

  17. Animal welfare in brown trout farming: hematological results

    Directory of Open Access Journals (Sweden)

    G. Forneris

    2010-01-01

    Full Text Available The effect of stress resulting from fish farming has received considerable attention in this last period and fish welfare in aquaculture is a relevant topic, very important for the future of aquaculture (Watson et al., 2004; Klinger et al., 1996; Peres et al., 2004; Ron et al., 1995;Wagner et al., 1995;Watson et al., 1998. Brown trout farming is less developed then rainbow trout farming, but this kind of fish farming is increasing, mainly for fish conservation and restocking aquaculture.

  18. Muscle wound healing in rainbow trout (Oncorhynchus mykiss)

    DEFF Research Database (Denmark)

    Schmidt, Jacob Günther; Andersen, Elisabeth Wreford; Ersbøll, Bjarne Kjær;

    2016-01-01

    We followed the progression of healing of deep excisional biopsy punch wounds over the course of 365 days in rainbow trout (Oncorhynchus mykiss) by monitoring visual wound healing and gene expression in the healing muscle at regular intervals (1, 3, 7, 14, 38 and 100 days post-wounding). In...... until at least 100 days post-wounding. The gene expression patterns and histology reveal limited capacity for muscle regeneration in rainbow trout, and muscle texture analyses one year after wound infliction confirm that wounds heal with fibrosis. At 100 dpw epidermis had fully regenerated, and dermis...

  19. Immunity to rhabdoviruses in rainbow trout: the antibody response

    DEFF Research Database (Denmark)

    Lorenzen, Niels; Lapatra, S.E.

    1999-01-01

    occasional detrimental effect on rainbow trout farming. Research efforts have been focused on understanding the mechanisms involved in protective immunity. Several specific and nonspecific cellular and humoral parameters are believed to be involved, but only the antibody response has been characterised in......, have demonstrated that rainbow trout can produce specific and highly functional antibodies that are able to neutralise virus pathogenicity in vitro as well as in vivo. The apparently more restricted antibody response to IHNV and VHSV antigens in fish compared to mammals could possibly be explained by...

  20. Sea growth of anadromous brown trout ( Salmo trutta)

    Science.gov (United States)

    de Leeuw, J. J.; ter Hofstede, R.; Winter, H. V.

    2007-08-01

    Sea growth rates were studied in anadromous brown trout caught in Lake IJsselmeer, The Netherlands. Growth in the first year at sea was estimated at 26 cm from length-frequency distributions, and at 21 cm from back-calculated growth rates from scale readings. These estimates are considerably higher than sea growth rates observed in populations at higher latitudes (Norway, Sweden), but compare well with the limited information on sea growth rates estimated for anadromous trout in the River Rhine and rivers in Normandy (France).

  1. INHIBITION OF LISTERIA MONOCYTOGENES ON RAINBOW TROUT (ONCORHYNCHUS MYKISS) USING TROUT SKIN GELATIN EDIBLE FILMS CONTAINING NISIN

    OpenAIRE

    Barbara Rasco; Gülhan Ünlü; Nageshwar Tammineni; YooTak Han; Caleb Nindo

    2013-01-01

    Contaminated food can pose high risk of listeriosis for susceptible populations. Listeria monocytogenes has been isolated from fresh, frozen and processed seafood products. Our goal in this study was to develop nisin-containing edible films using trout skin gelatin and test their effectiveness against L. monocytogenes on raw trout fillets (stored at 4 °C and 10 °C) as a strategy for reducing the risk of contamination. Films with 18 μg nisin/cm2 showed consistent inhibition and were chosen for...

  2. Multicentre evaluation of stable reference whole blood for enumeration of lymphocyte subsets by flow cytometry.

    Science.gov (United States)

    Edwards, Cherry; Belgrave, Danielle; Janossy, George; Bradley, Nicholas J; Stebbings, Richard; Gaines-Das, Rose; Thorpe, Robin; Sawle, Alex; Arroz, Maria Jorge; Brando, Bruno; Gratama, Jan Willem; Orfao de Matos, Alberto; Papa, Stephano; Papamichail, Michael; Lenkei, Rodica; Rothe, Gregor; Barnett, David

    2005-06-22

    BACKGROUND: Clinical indications for lymphocyte subset enumeration by flow cytometry include monitoring of disease progression and timing of therapeutic intervention in infection with human immunodeficiency virus. Until recently international standardisation has not been possible due to a lack of suitable stable reference material. METHODS: This study consisted of two trials of a stabilised whole blood preparation. Eleven participants were sent two standard protocols for staining plus gating strategy and asked to report absolute counts for lymphocyte subsets. RESULTS: No significant difference was detected between the two methods when results from the two assays and all partners were pooled. Significant differences in results from the different partners were observed. However, representative mean counts were obtained for geometric means, geometric coefficient of variation, and 95% confidence interval for CD3 910 cells/mul, 9%, and 888 to 933, respectively), CD4 (495 cells/mul, 12%, and 483 to 507), and CD8 (408 cells/mul, 13%, and 393 to 422). CONCLUSION: We have introduced a stabilised blood preparation and a well-characterized biological standard. The availability of this reference material greatly simplifies the validation of new techniques for CD4(+) T-cell enumeration and the expansion of external quality assurance programmes for clinical laboratories, including those that operate in resource-restricted environments. (c) 2005 Wiley-Liss, Inc. PMID:15973699

  3. Development and application of efficient pathway enumeration algorithms for metabolic engineering applications.

    Science.gov (United States)

    Liu, F; Vilaça, P; Rocha, I; Rocha, M

    2015-02-01

    Metabolic Engineering (ME) aims to design microbial cell factories towards the production of valuable compounds. In this endeavor, one important task relates to the search for the most suitable heterologous pathway(s) to add to the selected host. Different algorithms have been developed in the past towards this goal, following distinct approaches spanning constraint-based modeling, graph-based methods and knowledge-based systems based on chemical rules. While some of these methods search for pathways optimizing specific objective functions, here the focus will be on methods that address the enumeration of pathways that are able to convert a set of source compounds into desired targets and their posterior evaluation according to different criteria. Two pathway enumeration algorithms based on (hyper)graph-based representations are selected as the most promising ones and are analyzed in more detail: the Solution Structure Generation and the Find Path algorithms. Their capabilities and limitations are evaluated when designing novel heterologous pathways, by applying these methods on three case studies of synthetic ME related to the production of non-native compounds in E. coli and S. cerevisiae: 1-butanol, curcumin and vanillin. Some targeted improvements are implemented, extending both methods to address limitations identified that impair their scalability, improving their ability to extract potential pathways over large-scale databases. In all case-studies, the algorithms were able to find already described pathways for the production of the target compounds, but also alternative pathways that can represent novel ME solutions after further evaluation. PMID:25580014

  4. The Enumeration of Prudent Polygons by Area and its Unusual Asymptotics

    CERN Document Server

    Beaton, Nicholas R; Guttmann, Anthony J

    2010-01-01

    Prudent walks are special self-avoiding walks that never take a step towards an already occupied site, and \\emph{$k$-sided prudent walks} (with $k=1,2,3,4$) are, in essence, only allowed to grow along $k$ directions. Prudent polygons are prudent walks that return to a point adjacent to their starting point. Prudent walks and polygons have been previously enumerated by length and perimeter (Bousquet-M\\'elou, Schwerdtfeger; 2010). We consider the enumeration of \\emph{prudent polygons} by \\emph{area}. For the 3-sided variety, we find that the generating function is expressed in terms of a $q$-hypergeometric function, with an accumulation of poles towards the dominant singularity. This expression reveals an unusual asymptotic structure of the number of polygons of area $n$, where the critical exponent is the transcendental number $\\log_23$ and and the amplitude involves tiny oscillations. Based on numerical data, we also expect similar phenomena to occur for 4-sided polygons. The asymptotic methodology involves a...

  5. Exact enumeration and Monte Carlo results for self-avoiding walks in a slab

    International Nuclear Information System (INIS)

    We analyse exact enumeration data and Monte Carlo simulation results for a self-avoiding walk model of a polymer confined between two parallel attractive walls (plates). We use the exact enumeration data to establish the regions where the polymer exerts an effective attractive force between the plates and where the polymer exerts an effective repulsive force by estimating the boundary (zero-force) curve. While the phase boundaries of the phase diagram have previously been conjectured we delineate this further by establishing the order of the phase transitions for the so-called infinite slab (that is, when the plates are a macroscopic distance apart). We conclude that the adsorption transitions associated with either plate are similar in nature to the half-space situation even when a polymer is attached to the opposite wall. The transition between the two adsorbed phases is established as first order. Importantly, we conjecture a scaling theory valid in the desorbed and critically adsorbed regions of the phase diagram and demonstrate the consistency of the Monte Carlo data with these hypotheses by estimating the corresponding scaling functions

  6. Carcass and meat quality characteristics of Brahman cross bulls and steers finished on tropical pastures in Costa Rica.

    Science.gov (United States)

    Rodriguez, Julio; Unruh, John; Villarreal, Milton; Murillo, Olger; Rojas, Sailim; Camacho, Jorge; Jaeger, John; Reinhardt, Chris

    2014-03-01

    Forty-eight male calves (3/4 Brahman×1/4 Charolais) were used to determine carcass cutability and meat tenderness of Longissimus lumborum (LL), Gluteus medius (GM), Semitendinosus (ST) and Psoas major (PM) steaks from lighter weight carcasses of bulls and steers castrated at 3, 7, or 12 mo of age grown under tropical pasture conditions. Steaks from steers had lower (more tender) LL Warner-Bratzler shear force (WBSF) values than those from bulls. Steaks from steers castrated at 3 mo had lower GM WBSF than those from bulls. For PM steaks, those aged 28 d had lower WBSF than those aged 2d. Steaks aged 28 d had the lowest LL and GM WBSF and steaks aged 2d had the highest LL, GM, and ST WBSF. Castration at younger ages is recommended because it provides improvement in LL and GM tenderness over bulls with no differences in carcass traits or subprimal yields. PMID:24342184

  7. Influence of stall finishing of Podolian young bulls raised on pasture on fatty acid composition and oxidative status of meat

    Directory of Open Access Journals (Sweden)

    Manuel Scerra

    2014-11-01

    Full Text Available Sixteen Podolian young bulls were used to study the effects of two different feeding systems on fatty acids composition and oxidative stability of meat: C group, eight young bulls were kept indoors and fed with commercial concentrate for all experimental period (260 days; PC group, eight young bulls were allowed to graze a pasture for 200 days and shifted indoor, fed with concentrate, 60 days before being slaughtered. Meat from young bulls that were allowed, before stall finishing with concentrate, to graze a natural pasture showed lower levels of some n-6 PUFA and higher levels of some n-3 PUFA than meat from animals that were offered only concentrate for the whole experimental period. Lipid oxidation was not affected by the dietary treatment. After a period of 60-day-indoor finishing with concentrate, meat retained part of the health benefits, with regard to fatty acid composition, occurring from grazing.

  8. Kinetics of fertilization and development, and sex ratio of bovine embryos produced using the semen of different bulls.

    Science.gov (United States)

    Alomar, M; Tasiaux, H; Remacle, S; George, F; Paul, D; Donnay, I

    2008-08-01

    The between bulls variation in in vitro fertility and the shift of sex ratio towards male embryos are two problems affecting the in vitro production (IVP) of bovine embryos. Our objective was to evaluate the kinetics of fertilization, embryo development and the sex ratio of the resulting embryos using the frozen/thawed semen of four different bulls. In a first experiment, the kinetics of pronucleus (PN) formation was evaluated at 8, 12 and 18 h post-insemination (hpi). Based upon the pronuclei sizes and the distance between the two pronuclei, inseminated oocytes were classified in three PN stages. Differences between bulls were observed at each time point, but were more important at 12 hpi. At 8 and 12 hpi bull III showed a significantly faster PN evolution by comparison with the three other bulls (Pcinematography. The analysis of embryos reaching the blastocyst stage revealed significant differences in the mean time of first cleavage (range of 22.7-25.6h, P<0.05), while the lengths of the subsequent three cell cycles did not differ between bulls. The early mean time of first cleavage with bull III was associated with an early blastulation and a high blastocyst rate at Day 7, in opposition to what was observed with bull II showing a later timing of first cleavage (first cleavage 22.1 hpi versus 25.5 hpi; blastulation 140.4 hpi versus 152.5 hpi; D7 blastocyst rates: 31.3% versus 21.9%; P<0.05). In a third experiment, 65-76 Day 8 blastocysts per bull were sexed by PCR. Only blastocysts obtained with bull III showed a shift in sex ratio towards male embryos (76% male embryos; P<0.05). Such shift was already observed at the 2-cell and morula stages. In conclusion, the bull influences the kinetics of PN formation, of embryo development and the sex ratio of the embryos. Moreover, those parameters might be related. PMID:17629423

  9. BIOMASS AND DENSITY OF BROWN AND RAINBOW TROUT IN NEW MEXICO STREAMS

    Directory of Open Access Journals (Sweden)

    Srečko Lainer

    1995-03-01

    Full Text Available Mean stream numerical density of the brown trout (Salmo trutta m. fario Linnaeus, 1758 and the rainbow trout (Onchorhynchus mykiss Walbaum, 1792 was 0.090 fish/m2 of which brown trout averaged 69% (72% in total biomass in 15 high-elevation New Mexico streams (1,661-2,560 m above sea level. Total trout density varied from 0.008/m2 in 1988 and 1989. Mean trout density ranged between 0.023-0.121 fish/m2 at site s open to public fishing. Considerably higher densities (0.142-0.409 fish/m2 were observed at sites closed for fishing. In the seven selected streams shared by both species, brown trout density exceeded rainbow trout density except at the two sites closed to fishing. Brown trout were stocked only as fingerlings (average 7,000 fish/stream/year while rainbow trout were stocked only in harvestable sizes (11,000 fish/stream/year. Reported total trout yield rates exceeded the total number of fish estimated to be in the stream by 1.01 to 11.63 in most small streams open to fishing. The proportional stock density (PSD ranged between O and 50 percent. Streams with low to moderate intensities of fishing had the highest PSD.

  10. Interspecific interactions between brown trout and slimy sculpin in stream enclosures

    Science.gov (United States)

    Ruetz, C. R., III; Hurford, A.L.; Vondracek, B.

    2003-01-01

    We conducted a 30-d manipulative experiment in Valley Creek, Minnesota, to examine interspecific interactions between juvenile brown trout Salmo trutta and adult slimy sculpin Cottus cognatus. We measured the instantaneous growth of each species in the presence and absence of the other in 1-m2 enclosures. We tested single-species (three slimy sculpins/m2 or three brown trout/m2) and combined-species (three sculpins/m2 and three trout/m2) combinations in each of six riffles. We placed a clay tile in each enclosure to evaluate the effects of fish combinations on benthic macroinvertebrates. Growth of brown trout was unaffected by the presence of slimy sculpins (P = 0.647, power [to detect 50% increase in growth] = 0.92), whereas slimy sculpin growth was less in the presence of brown trout (P = 0.038). Densities of total benthic macroinvertebrates, Chironomidae, Trichoptera, and Physa did not differ among fish combinations (P > 0.3). However, densities of Gammarus pseudolimnaeus were significantly less in the presence of brown trout irrespective of the presence of slimy sculpins (P = 0.024), which could be a causal factor underlying the interaction between brown trout and slimy sculpins. We found asymmetrical competition between brown trout and slimy sculpins in stream enclosures, with brown trout being the superior competitor. Nevertheless, the size of enclosures may have biased our results, making it more likely to detect an effect of brown trout on slimy sculpins than vice versa.

  11. Eating quality of Holstein bull calves fed only grass or purely herbs matches that of concentrate-fed veal calves

    OpenAIRE

    Therkildsen, M.; Jensen, S. K.; Vestergaard, M.

    2012-01-01

    Organic meat production from Holstein calves born in dairy herds require that the bull calves are raised outdoor at least 6 months a year, and on large quantities of roughage in the diet. This study aimed at elucidating if Holstein bull calves fed either purely grass or purely herbs prior to slaughter would differ in meat quality traits, fatty acid composition and sensory profile and if they differed in quality aspects from concentrate-fed veal calves.

  12. Efficacy of caudal epidural injection of lidocaine, xylazine and xylazine plus hyaluronidase in reducing discomfort produced by electroejaculation in bulls

    OpenAIRE

    PAGLIOSA, Ronaldo C.; DEROSSI, Rafael; COSTA, Deiler S.; FARIA, Fabio J.C.

    2015-01-01

    To test the hypothesis that epidural administration of lidocaine, xylazine or xylazine plus hyaluronidase provides reduced pain and stress during electroejaculation in bulls, eight 30-month-old Nellore bulls received saline solution (control), 2% lidocaine, 2% xylazine or 2% xylazine plus hyaluronidase injected into the first intercoccygeal (Co1–Co2) epidural space in randomized order. Heart rate, respiratory rate, mean arterial pressure, analgesia, animal behavior and motor blockade were eva...

  13. Relationship between the Rumen Microbiome and Residual Feed Intake-Efficiency of Brahman Bulls Stocked on Bermudagrass Pastures

    OpenAIRE

    Joshua C McCann; Leanne M Wiley; Forbes, T. David; Rouquette, Francis M.; Tedeschi, Luis O.

    2014-01-01

    Residual feed intake (RFI) testing has increased selection pressure on biological efficiency in cattle. The objective of this study was to assess the association of the rumen microbiome in inefficient, positive RFI (p-RFI) and efficient, negative RFI (n-RFI) Brahman bulls grazing ‘Coastal’ bermudagrass [Cynodondactylon (L.) Pers.]under two levels of forage allowance (high and low stocking intensity). Sixteen Brahman bulls were previously fed in confinement for 70 d to determine the RFI phenot...

  14. Propolis or cashew and castor oils effects on composition of Longissimus muscle of crossbred bulls finished in feedlot

    OpenAIRE

    Maribel Velandia Valero; Juliana Akamine Torrecilhas; Fernando Zawadzki; Elton Guntendorfer Bonafe; Grasiele Scaramal Madrona; Rodolpho Martin do Prado; Rodrigo Augusto Cortêz Passetti; Dayane Cristina Rivaroli; Jesuí Vergilio Visentainer; Ivanor Nunes do Prado

    2014-01-01

    The natural additive products (propolis or essential oils), in replacing antibiotics, could be used as an alternative for feed strategies to improve animal production. This work was performed to evaluate the effect of natural additives as propolis or essential oils on meat quality of crossbred (Aberdeen Angus vs. Nellore) bulls. Thirty bulls were kept in feedlot (individual pen) for 55 d and randomly assigned to one of three diets (n = 10): control (CON), propolis (PRO), or essential oils (OI...

  15. Allelic Frequency of Kappa-Casein and Beta-Lactoglobulin in Indian Crossbred (Bos taurus X Bos indicus) Dairy Bulls

    OpenAIRE

    Patel, Rajesh K.; Chauhan, Jenabhai B.; Singh, Krishna M.; Kalpesh J. Soni

    2007-01-01

    A polymerase chain reaction - restriction fragment length polymorphism test was performed on DNA samples extracted from blood samples of 256 Holstein Friesian crossbred and 112 from Jersey crossbred bulls/bull calves to detect allelic frequency of the bovine kappa-casein and beta-lactoglobulin gene responsible for milk production traits. A 350 bp fragment of kappa-casein and a 247 bp fragment of beta-lactoglobulin were amplified and digested with Hinf I and Hae III restriction enzymes, respec...

  16. Productive performance and blood parameters of bulls fed diets containing babassu mesocarp bran and whole or ground corn

    OpenAIRE

    Aline Evangelista Machado Santana; José Neuman Miranda Neiva; João Restle; Fabrícia Rocha Chaves Miotto; Luciano Fernandes Sousa; Vera Lúcia Araújo; Ranniere Rodrigues Pereira Parente; Rhaiza Alves de Oliveira

    2015-01-01

    The objective of the present study was to evaluate the effects of corn milling and the inclusion of babassu mesocarp bran (BMB) on productive performance, digestibility of dietary nutrients, and blood parameters of dairy crossbred (Holstein-Gyr) bulls finished in confinement. Twenty-four bulls were fed four different experimental diets, containing two levels of inclusion of BMB (0 and 41.24%) and corn supplied in two different forms (ground and whole), for 98 days (77 days of data collection ...

  17. Genetic Structure of Pacific Trout at the Extreme Southern End of Their Native Range.

    Science.gov (United States)

    Abadía-Cardoso, Alicia; Garza, John Carlos; Mayden, Richard L; García de León, Francisco Javier

    2015-01-01

    Salmonid fishes are cold water piscivores with a native distribution spanning nearly the entire temperate and subarctic northern hemisphere. Trout in the genus Oncorhynchus are the most widespread salmonid fishes and are among the most important fish species in the world, due to their extensive use in aquaculture and valuable fisheries. Trout that inhabit northwestern Mexico are the southernmost native salmonid populations in the world, and the least studied in North America. They are unfortunately also facing threats to their continued existence. Previous work has described one endemic species, the Mexican golden trout (O. chrysogaster), and one endemic subspecies, Nelson's trout (O. mykiss nelsoni), in Mexico, but previous work indicated that there is vastly more biodiversity in this group than formally described. Here we conducted a comprehensive genetic analysis of this important group of fishes using novel genetic markers and techniques to elucidate the biodiversity of trout inhabiting northwestern Mexico, examine genetic population structure of Mexican trout and their relationships to other species of Pacific trout, and measure introgression from non-native hatchery rainbow trout. We confirmed substantial genetic diversity and extremely strong genetic differentiation present in the Mexican trout complex, not only between basins but also between some locations within basins, with at least four species-level taxa present. We also revealed significant divergence between Mexican trout and other trout species and found that introgression from non-native rainbow trout is present but limited, and that the genetic integrity of native trout is still maintained in most locations. This information will help to guide effective conservation strategies for this important group of fishes. PMID:26509445

  18. Selective breeding of food sized rainbow trout against Flavobacteriosis

    Science.gov (United States)

    Selective breeding of rainbow trout is an important component of an integrated fish health management program. The current goals of our selective breeding program are to improve disease resistance, growth and survival in a reuse water environment. To improve these traits, data are recorded on thousa...

  19. Selective breeding of food size rainbow trout against Flavobacteriosis

    Science.gov (United States)

    Selective breeding of rainbow trout is an important component of an integrated fish health management program. The current goals of our selective breeding program are to improve disease resistance, growth and survival in a reuse water environment. To improve these traits, data are recorded on thousa...

  20. ACUTE TOXICITY OF AMMONIA AND NITRITE TO CUTTHROAT TROUT FRY

    Science.gov (United States)

    The toxicity of ammonia and of nitrite was tested on cutthroat trout (Salmo clarki) fry (1-3 g) for periods up to a month in eight laboratory flow-through bioassays. Median lethal concentration (LC50) values for ammonia (mg/liter un-ionized NH3) were 0.5-0.8 for 96 hours, and 0.3...