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Sample records for broadens cellular analysis

  1. Calculation of the Doppler broadening function using Fourier analysis

    International Nuclear Information System (INIS)

    Goncalves, Alessandro da Cruz

    2010-01-01

    An efficient and precise method for calculation of Doppler broadening function is very important to obtain average group microscopic cross sections, self shielding factors, resonance integrals and others reactor physics parameter. In this thesis two different methods for calculation of Doppler broadening function and interference term will be presented. The main method is based on a new integral form for Doppler broadening function ψ(x,ζ) which gives a mathematical interpretation of the approximation proposed by Bethe and Placzek, as the convolution of the Lorentzian function with a Gaussian function. This interpretation besides leading to a new integral form for ψ(x,ζ), enables to obtain a simple analytic solution for the Doppler broadening function. (author)

  2. Cellular automata analysis and applications

    CERN Document Server

    Hadeler, Karl-Peter

    2017-01-01

    This book focuses on a coherent representation of the main approaches to analyze the dynamics of cellular automata. Cellular automata are an inevitable tool in mathematical modeling. In contrast to classical modeling approaches as partial differential equations, cellular automata are straightforward to simulate but hard to analyze. In this book we present a review of approaches and theories that allow the reader to understand the behavior of cellular automata beyond simulations. The first part consists of an introduction of cellular automata on Cayley graphs, and their characterization via the fundamental Cutis-Hedlund-Lyndon theorems in the context of different topological concepts (Cantor, Besicovitch and Weyl topology). The second part focuses on classification results: What classification follows from topological concepts (Hurley classification), Lyapunov stability (Gilman classification), and the theory of formal languages and grammars (Kůrka classification). These classifications suggest to cluster cel...

  3. Line broadening analysis of implosion core conditions at Z using argon K-shell spectroscopy

    Energy Technology Data Exchange (ETDEWEB)

    Burris-Mog, T.J. [Department of Physics, University of Nevada, Reno, NV 89557 (United States)]. E-mail: burris@physics.unr.edu; Mancini, R.C. [Sandia National Laboratories, Albuquerque, NM 87185 (United States); Bailey, J.E. [Sandia National Laboratories, Albuquerque, NM 87185 (United States); Chandler, G.A. [Sandia National Laboratories, Albuquerque, NM 87185 (United States); Rochau, G. [Sandia National Laboratories, Albuquerque, NM 87185 (United States); Dunham, G. [Sandia National Laboratories, Albuquerque, NM 87185 (United States); Lake, P.W. [Sandia National Laboratories, Albuquerque, NM 87185 (United States); Peterson, K. [Sandia National Laboratories, Albuquerque, NM 87185 (United States); Slutz, S.A. [Sandia National Laboratories, Albuquerque, NM 87185 (United States); Mehlhorn, T.A. [Sandia National Laboratories, Albuquerque, NM 87185 (United States); Golovkin, I.E. [Prism Computational Sciences, Madison, WI 53703 (United States); MacFarlane, J.J. [Prism Computational Sciences, Madison, WI 53703 (United States)

    2006-05-15

    We report on spectral line broadening analysis of Ar K-shell lines from argon-doped implosion cores driven by a dynamic hohlraum z-pinch. The observed Ar spectra include emissions from the resonance series in H- and He-like Ar ions, i.e., Ly{alpha}, Ly{beta} and Ly{gamma}, and He{alpha}, He{beta}, He{gamma} and He{delta} lines, respectively. The analysis accounts for opacity and Stark broadening to determine electron density, N{sub e}, and areal-density, N{delta}R, values for the ground state populations of H- and He-like Ar ions. Furthermore, these results are combined with the ratio of H- and He-like ground state populations to extract the electron temperature, T{sub e}.

  4. Line broadening analysis of implosion core conditions at Z using argon K-shell spectroscopy

    International Nuclear Information System (INIS)

    Burris-Mog, T.J.; Mancini, R.C.; Bailey, J.E.; Chandler, G.A.; Rochau, G.; Dunham, G.; Lake, P.W.; Peterson, K.; Slutz, S.A.; Mehlhorn, T.A.; Golovkin, I.E.; MacFarlane, J.J.

    2006-01-01

    We report on spectral line broadening analysis of Ar K-shell lines from argon-doped implosion cores driven by a dynamic hohlraum z-pinch. The observed Ar spectra include emissions from the resonance series in H- and He-like Ar ions, i.e., Lyα, Lyβ and Lyγ, and Heα, Heβ, Heγ and Heδ lines, respectively. The analysis accounts for opacity and Stark broadening to determine electron density, N e , and areal-density, NΔR, values for the ground state populations of H- and He-like Ar ions. Furthermore, these results are combined with the ratio of H- and He-like ground state populations to extract the electron temperature, T e

  5. Analysis of a quantum memory for photons based on controlled reversible inhomogeneous broadening

    International Nuclear Information System (INIS)

    Sangouard, Nicolas; Simon, Christoph; Afzelius, Mikael; Gisin, Nicolas

    2007-01-01

    We present a detailed analysis of a quantum memory for photons based on controlled and reversible inhomogeneous broadening. The explicit solution of the equations of motion is obtained in the weak excitation regime, making it possible to gain insight into the dependence of the memory efficiency on the optical depth, and on the width and shape of the atomic spectral distributions. We also study a simplified memory protocol which does not require any optical control fields

  6. Symmetry analysis of cellular automata

    International Nuclear Information System (INIS)

    García-Morales, V.

    2013-01-01

    By means of B-calculus [V. García-Morales, Phys. Lett. A 376 (2012) 2645] a universal map for deterministic cellular automata (CAs) has been derived. The latter is shown here to be invariant upon certain transformations (global complementation, reflection and shift). When constructing CA rules in terms of rules of lower range a new symmetry, “invariance under construction” is uncovered. Modular arithmetic is also reformulated within B-calculus and a new symmetry of certain totalistic CA rules, which calculate the Pascal simplices modulo an integer number p, is then also uncovered.

  7. Software for analysis of waveforms acquired by digital Doppler broadening spectrometer

    International Nuclear Information System (INIS)

    Vlcek, M; Čížek, J; Procházka, I

    2013-01-01

    High-resolution digital spectrometer for coincidence measurement of Doppler broadening of positron annihilation radiation was recently developed and tested. In this spectrometer pulses from high purity Ge (HPGe) detectors are sampled in the real time by fast digitizers and subsequently analyzed off-line by software. We present description of the software routines used for pulse shape analysis in two spectrometer configurations: (i) semi-digital setup in which detector pulses shaped in spectroscopic amplifiers (SA's) are digitized; (ii) pure digital setup in which pulses from detector pre-amplifiers are digitized directly. Software developed in this work will be freely available in the form of source code and pre-compiled binaries.

  8. EXPERIMENTAL STUDIES AND NUMERICAL ANALYSIS FOR THE DEFORMATIONSTRENGTH CHARACTERISTICS OF RAMMED MICRO-PILES WITH A BROADENED AGGREGATE BASE

    Directory of Open Access Journals (Sweden)

    V. S. Alekhin

    2016-01-01

    Full Text Available Objectives. Experimental and theoretical determination of dependencies of strength characteristics of bored micropiles with a pedestal formed by rammed rubble on: casing diameter, fraction, and volume of crushed stone for collapsing macroporous clays. Method. Laboratory and field experiments were carried out; numerical calculations in two-dimensional and threedimensional arrangement for the determination of strain-stress analysis of the foundation using a MIDAS GTS_NX software system, implementing the finite element method and developed for complex geotechnical problems; some recommendations for implementation are provided. Results The dependence of the load-bearing capacity of bored micropiles on a broadened base of rammed aggregate with vertical loading is determined. At the maximum broadening diameter of 3.5 of the micropiles shaft the load-bearing capacity of the subsoil is increased by between 1.8 and 6 times compared with micropiles without broadening depending on the diameter of the pile shaft. During the experimental and numerical studies of the dependencies of deformation-strength parameters of the deep foundation works consisting of a bored micropile with a broadened base, namely the pile diameter, aggregate particle size and volume, seal diameter of the subsoil soil half-space, as well as the development of the theory of formation of the end broadening geometry of rammed aggregate in the form of an ellipsoid of revolution were established. Conclusion The full-scale measurements of the broadening of bored micropiles showed that their shape is close to an ellipsoid of revolution, and the ratio of semi-axes is directly dependent on the characteristics of soil and gravel volume, which was taken into account in the construction of the finite element model in the numerical simulation experiment.The results of numerical studies of the bored micropile loading with broadened base on the MIDAS GTS show good agreement with the results of the

  9. Cellular signaling identifiability analysis: a case study.

    Science.gov (United States)

    Roper, Ryan T; Pia Saccomani, Maria; Vicini, Paolo

    2010-05-21

    Two primary purposes for mathematical modeling in cell biology are (1) simulation for making predictions of experimental outcomes and (2) parameter estimation for drawing inferences from experimental data about unobserved aspects of biological systems. While the former purpose has become common in the biological sciences, the latter is less common, particularly when studying cellular and subcellular phenomena such as signaling-the focus of the current study. Data are difficult to obtain at this level. Therefore, even models of only modest complexity can contain parameters for which the available data are insufficient for estimation. In the present study, we use a set of published cellular signaling models to address issues related to global parameter identifiability. That is, we address the following question: assuming known time courses for some model variables, which parameters is it theoretically impossible to estimate, even with continuous, noise-free data? Following an introduction to this problem and its relevance, we perform a full identifiability analysis on a set of cellular signaling models using DAISY (Differential Algebra for the Identifiability of SYstems). We use our analysis to bring to light important issues related to parameter identifiability in ordinary differential equation (ODE) models. We contend that this is, as of yet, an under-appreciated issue in biological modeling and, more particularly, cell biology. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

  10. Analysis of neutron diffraction peak broadening caused by internal stresses in composite materials

    International Nuclear Information System (INIS)

    Todd, R.I.; Borsa, C.; Derby, B.

    1994-01-01

    Neutron diffraction is an essential tool in the study of internal stresses in composite materials. In most work only the peak shifts caused by the related elastic strains are considered, but other valuable information exists in the form of peak shape changes. The conditions under which the pure diffraction profile of the composite (i.e. the profile when all sources of broadening not caused by the residual stresses are removed) represents the probability distribution of the peak shifts corresponding to the strains are examined. It is shown that in these conditions, the pure diffraction profile has no attributes of particle size broadening (and vice versa), thereby providing a test for the validity of results interpreted in this way. The experimental derivation of measured strain distributions in Al 2 O 3 /SiCp composites using neutron diffraction is described. No apparent particle size broadening was detected, demonstrating the validity of the results, which also satisfied other tests for consistency

  11. Doppler Broadening Calculations of Compton Scattering for Molecules, Plastics, Tissues, and Few Biological Materials in the X-Ray Region: An Analysis in Terms of Compton Broadening and Geometrical Energy Broadening

    Science.gov (United States)

    Rao, D. V.; Cesareo, R.; Brunetti, A.; Gigante, G. E.; Akatsuka, T.; Takeda, T.; Itai, Y.

    2004-09-01

    Relativistic and nonrelativistic Compton profile cross sections for H, C, N, O, P, and Ca and for a few important biological materials such as water, polyethylene, lucite, polystyrene, nylon, polycarbonate, bakelite, fat, bone and calcium hydroxyapatite are estimated for a number of Kα x-ray energies and for 59.54 keV (Am-241) γ photons. Energy broadening and geometrical broadening (ΔG) is estimated by assuming θmin and θmax are symmetrically situated around θ=90°. FWHM of J(PZ) and FWHM of Compton energy broadening are evaluated at various incident photon energies. These values are estimated around the centroid of the Compton profile with an energy interval of 0.1 and 1.0 keV for 59.54 keV photons. Total Compton, individual shell, and Compton energy-absorption scattering cross sections are evaluated in the energy region from 0.005 to 0.5 MeV. It is an attempt to know the effect of Doppler broadening for single atoms, many of which constitute the biological materials.

  12. The deconvolution of Doppler-broadened positron annihilation measurements using fast Fourier transforms and power spectral analysis

    International Nuclear Information System (INIS)

    Schaffer, J.P.; Shaughnessy, E.J.; Jones, P.L.

    1984-01-01

    A deconvolution procedure which corrects Doppler-broadened positron annihilation spectra for instrument resolution is described. The method employs fast Fourier transforms, is model independent, and does not require iteration. The mathematical difficulties associated with the incorrectly posed first order Fredholm integral equation are overcome by using power spectral analysis to select a limited number of low frequency Fourier coefficients. The FFT/power spectrum method is then demonstrated for an irradiated high purity single crystal sapphire sample. (orig.)

  13. Analysis of self-broadened pure rotational and rovibrational lines of methyl chloride at room temperature

    Science.gov (United States)

    Bray, C.; Jacquemart, D.; Lacome, N.; Guinet, M.; Cuisset, A.; Eliet, S.; Hindle, F.; Mouret, G.; Rohart, F.; Buldyreva, J.

    2013-02-01

    Rovibrational absorption spectra of methyl chloride in the spectral region between 2800 and 3200 cm-1 were recorded with a high-resolution Fourier transform spectrometer. A multispectrum fitting procedure was used to analyze 527 transitions of the ν1 band and to retrieve the self-broadening coefficients for various J- and K-values with an estimated accuracy around 8%. Pure rotational transitions of CH3Cl in the submillimeter/terahertz region (0.2-1.4 THz) were also investigated using two complementary techniques of frequency-multiplication and continuous-wave photomixing. Forty-three pure rotational self-broadening coefficients were extracted with the accuracy between 3 and 5%. The whole set of measured values was used to model the J- and K-rotational dependences of the self-broadening coefficients by second-order polynomials. In addition, semi-classical calculations were performed, based on the real symmetric-top geometry of the active molecule, an intermolecular potential model including not only the dominant electrostatic but also the short-range forces, as well as on an exact classical treatment of the relative translational motion of the colliding partners. Comparison of all experimental and theoretical results shows similar rotational dependences and no significant vibrational dependence, so that extrapolations to other spectral regions should be straightforward.

  14. Mathematical analysis of complex cellular activity

    CERN Document Server

    Bertram, Richard; Teka, Wondimu; Vo, Theodore; Wechselberger, Martin; Kirk, Vivien; Sneyd, James

    2015-01-01

    This book contains two review articles on mathematical physiology that deal with closely related topics but were written and can be read independently. The first article reviews the basic theory of calcium oscillations (common to almost all cell types), including spatio-temporal behaviors such as waves. The second article uses, and expands on, much of this basic theory to show how the interaction of cytosolic calcium oscillators with membrane ion channels can result in highly complex patterns of electrical spiking. Through these examples one can see clearly how multiple oscillatory processes interact within a cell, and how mathematical methods can be used to understand such interactions better. The two reviews provide excellent examples of how mathematics and physiology can learn from each other, and work jointly towards a better understanding of complex cellular processes. Review 1: Richard Bertram, Joel Tabak, Wondimu Teka, Theodore Vo, Martin Wechselberger: Geometric Singular Perturbation Analysis of Burst...

  15. Applications of Fourier analysis to broadening of stellar line profiles. V

    International Nuclear Information System (INIS)

    Smith, M.A.; Frisch, H.

    1976-01-01

    Turbulence dominated by eddies of a finite size produces effects on a line profile which are similar to both macro- and micro-turbulence but which are at the same time neither. It is suggested that one of these effects in the Fourier transform domain, namely the narrowing of the first natural sidelobe relative to the width of the main lobe, can be used as an indicator of the dominance of finite-sized eddies ('mesoturbulence'). An examination of some existing solar data shows that finite-sized eddy models fit the observed sidelobe widths better than do models computed with any reasonable combination of micro- and macro-turbulent broadenings. (Auth.)

  16. Spectral line profile analysis for evaluation of Gaussian and Lorentzian widths and collisional broadening coefficient

    International Nuclear Information System (INIS)

    Nakhate, S.G.; Ahmad, S.A.; Pushpa; Rao, M.; Saksena, G.D.

    1991-01-01

    Deconvolution of atomic line profiles, recorded on PC interfaced recording Fabry-Perot spectrometer, into its Lorentzian and Gaussian component has been carried out. Effect of various parameters of hollow cathode discharge lamp (light source) such as discharge current, bath temperature and gas pressure on Lorentzian and Gaussian width has been studied. The value of the self-broadening coefficient for neon-neon atomic interaction for the transition 2p 5 4P-2P 5 3s (λ=3472.571 A) has been determined. (author). 15 refs., 6 figs., 4 tabs

  17. Preliminary analysis of aircraft fuel systems for use with broadened specification jet fuels

    Science.gov (United States)

    Pasion, A. J.; Thomas, I.

    1977-01-01

    An analytical study was conducted on the use of broadened specification hydrocarbon fuels in present day aircraft. A short range Boeing 727 mission and three long range Boeing 747 missions were used as basis of calculation for one-day-per-year extreme values of fuel loading, airport ambient and altitude ambient temperatures with various seasonal and climatic conditions. Four hypothetical fuels were selected; two high-vapor-pressure fuels with 35 kPa and 70 kPa RVP and two high-freezing-point fuels with -29 C and -18 C freezing points. In-flight fuel temperatures were predicted by Boeing's aircraft fuel tank thermal analyzer computer program. Boil-off rates were calculated for the high vapor pressure fuels and heating/insulation requirements for the high freezing point fuels were established. Possible minor and major heating system modifications were investigated with respect to heat output, performance and economic penalties for the high freezing point fuels.

  18. Stark Broadening and White Dwarfs

    Directory of Open Access Journals (Sweden)

    Dimitrijević Milan S.

    2011-12-01

    Full Text Available White dwarf and pre-white dwarfs are the best types of stars for the application of Stark broadening research results in astrophysics, since in the atmospheres of these stars physical conditions are very favorable for this line broadening mechanism - in hot hydrogen-deficient white dwarfs and pre-white dwarfs Teff = 75 000–180 000 K and log g = 5.5–8 [cgs]. Even for much cooler DA and DB white dwarfs with the typical effective temperatures 10 000-20 000 K, Stark broadening is usually the dominant broadening mechanism. In this review, Stark broadening in white dwarf spectra is considered, and the attention is drawn to the STARK-B database (http://stark-b.obspm.fr/, containing the parameters needed for analysis and synthesis of white dwarf spectra, as well as for the collective efforts to develop the Virtual Atomic and Molecular Data Center.

  19. Chemical analysis using coincidence Doppler broadening and supporting first-principles theory: Applications to vacancy defects in compound semiconductors

    International Nuclear Information System (INIS)

    Makkonen, I.; Rauch, C.; Mäki, J.-M.; Tuomisto, F.

    2012-01-01

    The Doppler broadening of the positron annihilation radiation contains information on the chemical environment of vacancy defects trapping positrons in solids. The measured signal can, for instance, reveal impurity atoms situated next to vacancies. As compared to integrated quantities such as the positron annihilation rate or the annihilation line shape parameters, the full Doppler spectrum measured in the coincidence mode contains much more useful information for defect identification. This information, however, is indirect and complementary understanding is needed to fully interpret the results. First-principles calculations are a valuable tool in the analysis of measured spectra. One can construct an atomic-scale model for a given candidate defect, calculate from first principles the corresponding Doppler spectrum, and directly compare results between experiment and theory. In this paper we discuss recent examples of successful combinations of coincidence Doppler broadening measurements and supporting first-principles calculations. These demonstrate the predictive power of state-of-the-art calculations and the usefulness of such an approach in the chemical analysis of vacancy defects.

  20. Doppler Broadening Analysis of Steel Specimens Using Accelerator Based In Situ Pair Production

    International Nuclear Information System (INIS)

    Makarashvili, V.; Wells, D. P.; Roy, A. K.

    2009-01-01

    Positron Annihilation Spectroscopy (PAS) techniques can be utilized as a sensitive probe of defects in materials. Studying these microscopic defects is very important for a number of industries in order to predict material failure or structural integrity. We have been developing gamma-induced pair-production techniques to produce positrons in thick samples (∼4-40 g/cm 2 , or ∼0.5-5 cm in steel). These techniques are called 'Accelerator-based Gamma-induced Positron Annihilation Spectroscopy'(AG-PAS). We have begun testing the capabilities of this technique for imaging of defect densities in thick structural materials. As a first step, a linear accelerator (LINAC) was employed to produce photon beams by stopping 15 MeV electrons in a 1 mm thick tungsten converter. The accelerator is capable of operating with 30-60 ns pulse width, up to 200 mA peak current at 1 kHz repetition rate. The highly collimated bremsstrahlung beam impinged upon our steel tensile specimens, after traveling through a 1.2 m thick concrete wall. Annihilation radiation was detected by a well-shielded and collimated high-purity germanium detector (HPGe). Conventional Doppler broadening spectrometry (DBS) was performed to determine S, W and T parameters for our samples.

  1. Analysis of Human Mobility Based on Cellular Data

    Science.gov (United States)

    Arifiansyah, F.; Saptawati, G. A. P.

    2017-01-01

    Nowadays not only adult but even teenager and children have then own mobile phones. This phenomena indicates that the mobile phone becomes an important part of everyday’s life. Based on these indication, the amount of cellular data also increased rapidly. Cellular data defined as the data that records communication among mobile phone users. Cellular data is easy to obtain because the telecommunications company had made a record of the data for the billing system of the company. Billing data keeps a log of the users cellular data usage each time. We can obtained information from the data about communication between users. Through data visualization process, an interesting pattern can be seen in the raw cellular data, so that users can obtain prior knowledge to perform data analysis. Cellular data processing can be done using data mining to find out human mobility patterns and on the existing data. In this paper, we use frequent pattern mining and finding association rules to observe the relation between attributes in cellular data and then visualize them. We used weka tools for finding the rules in stage of data mining. Generally, the utilization of cellular data can provide supporting information for the decision making process and become a data support to provide solutions and information needed by the decision makers.

  2. Calculation of the Doppler broadening function using Fourier analysis;Calculo da funcao de alargamento Doppler utilizando analise de Fourier

    Energy Technology Data Exchange (ETDEWEB)

    Goncalves, Alessandro da Cruz

    2010-07-01

    An efficient and precise method for calculation of Doppler broadening function is very important to obtain average group microscopic cross sections, self shielding factors, resonance integrals and others reactor physics parameter. In this thesis two different methods for calculation of Doppler broadening function and interference term will be presented. The main method is based on a new integral form for Doppler broadening function {psi}(x,{zeta}) which gives a mathematical interpretation of the approximation proposed by Bethe and Placzek, as the convolution of the Lorentzian function with a Gaussian function. This interpretation besides leading to a new integral form for {psi}(x,{zeta}), enables to obtain a simple analytic solution for the Doppler broadening function. (author)

  3. Broadening engineering education: bringing the community in : commentary on "social responsibility in French engineering education: a historical and sociological analysis".

    Science.gov (United States)

    Conlon, Eddie

    2013-12-01

    Two issues of particular interest in the Irish context are (1) the motivation for broadening engineering education to include the humanities, and an emphasis on social responsibility and (2) the process by which broadening can take place. Greater community engagement, arising from a socially-driven model of engineering education, is necessary if engineering practice is to move beyond its present captivity by corporate interests.

  4. Error performance analysis in downlink cellular networks with interference management

    KAUST Repository

    Afify, Laila H.

    2015-05-01

    Modeling aggregate network interference in cellular networks has recently gained immense attention both in academia and industry. While stochastic geometry based models have succeeded to account for the cellular network geometry, they mostly abstract many important wireless communication system aspects (e.g., modulation techniques, signal recovery techniques). Recently, a novel stochastic geometry model, based on the Equivalent-in-Distribution (EiD) approach, succeeded to capture the aforementioned communication system aspects and extend the analysis to averaged error performance, however, on the expense of increasing the modeling complexity. Inspired by the EiD approach, the analysis developed in [1] takes into consideration the key system parameters, while providing a simple tractable analysis. In this paper, we extend this framework to study the effect of different interference management techniques in downlink cellular network. The accuracy of the proposed analysis is verified via Monte Carlo simulations.

  5. Lempel-Ziv complexity analysis of one dimensional cellular automata.

    Science.gov (United States)

    Estevez-Rams, E; Lora-Serrano, R; Nunes, C A J; Aragón-Fernández, B

    2015-12-01

    Lempel-Ziv complexity measure has been used to estimate the entropy density of a string. It is defined as the number of factors in a production factorization of a string. In this contribution, we show that its use can be extended, by using the normalized information distance, to study the spatiotemporal evolution of random initial configurations under cellular automata rules. In particular, the transfer information from time consecutive configurations is studied, as well as the sensitivity to perturbed initial conditions. The behavior of the cellular automata rules can be grouped in different classes, but no single grouping captures the whole nature of the involved rules. The analysis carried out is particularly appropriate for studying the computational processing capabilities of cellular automata rules.

  6. Spectral Analysis of Quantum-Dash Lasers: Effect of Inhomogeneous Broadening of the Active-Gain Region

    KAUST Repository

    Khan, Mohammed Zahed Mustafa; Ng, Tien Khee; Ooi, Boon S.; Schwingenschlö gl, Udo

    2012-01-01

    The effect of the active region inhomogeneity on the spectral characteristics of InAs/InP quantum-dash (Qdash) lasers is examined theoretically by solving the coupled set of carrier-photon rate equations. The inhomogeneity due to dash size or composition fluctuation is included in the model by considering dispersive energy states and characterized by a Gaussian envelope. In addition, the technique incorporates multilongitudinal photon modes and homogeneous broadening of the optical gain. The results predict a red shift in the central lasing wavelength of Qdash lasers on increasing the inhomogeneous broadening either explicitly or implicitly, which supports various experimental observations. The threshold current density and the lasing bandwidth are also found to increase. © 2012 IEEE.

  7. Spectral Analysis of Quantum-Dash Lasers: Effect of Inhomogeneous Broadening of the Active-Gain Region

    KAUST Repository

    Khan, Mohammed Zahed Mustafa

    2012-05-01

    The effect of the active region inhomogeneity on the spectral characteristics of InAs/InP quantum-dash (Qdash) lasers is examined theoretically by solving the coupled set of carrier-photon rate equations. The inhomogeneity due to dash size or composition fluctuation is included in the model by considering dispersive energy states and characterized by a Gaussian envelope. In addition, the technique incorporates multilongitudinal photon modes and homogeneous broadening of the optical gain. The results predict a red shift in the central lasing wavelength of Qdash lasers on increasing the inhomogeneous broadening either explicitly or implicitly, which supports various experimental observations. The threshold current density and the lasing bandwidth are also found to increase. © 2012 IEEE.

  8. Refinements of On-The-Fly Doppler Broadening via Gauss-Hermite Quadrature in Monte Carlo Reactor Analysis

    International Nuclear Information System (INIS)

    Jo, YuGwon; Cho, Nam Zin

    2017-01-01

    In this paper, the GHQ algorithm is refined in two aspects. One is that the Doppler broadened cross section in the low energy range is estimated by the two variations of GHQ (GHQ1 and GHQ2) and the two-point GLQ for both accuracy and computational efficiency. The other is a refined cross-section table lookup procedure for GHQ to reduce computing times. For the low energy range (y < 4), the effective cross section is estimated by the GHQ2 algorithm to improve both accuracy and computational efficiency. To further reduce the computing times for Doppler broadening, a procedure of cross-section table lookups for the GHQ algorithm is also refined. From the numerical results, we have shown that the GHQ2 algorithm removes oscillatory errors in the low energy range, which appear in the GHQ1 algorithm, while the computing time of the GHQ2 algorithm is much faster than that of the two-point GLQ algorithm. In conclusion, the “GHQ2/GHQ” algorithm (GHQ2 for y < 4 and GHQ for y ≥4) with the refined cross-section table lookup procedure can be an efficient and accurate OTF Doppler broadening algorithm for MC simulations, when the cross section data is piecewise linearly tabulated.

  9. Stability analysis for cellular neural networks with variable delays

    International Nuclear Information System (INIS)

    Zhang Qiang; Wei Xiaopeng; Xu Jin

    2006-01-01

    Some sufficient conditions for the global exponential stability of cellular neural networks with variable delay are obtained by means of a method based on delay differential inequality. The method, which does not make use of Lyapunov functionals, is simple and effective for the stability analysis of neural networks with delay. Some previously established results in the literature are shown to be special cases of the presented result

  10. Microscopic nature of inhomogeneous line broadening: Analysis of the excitation-line-narrowing spectra of Cf4+ in CeF4

    International Nuclear Information System (INIS)

    Liu, G.K.; Huang, J.; Beitz, J.V.

    1993-01-01

    Optical transitions between 5f states of tetravalent californium ion doped (1 metal-atom %) into CeF 4 exhibit unusually large inhomogeneous broadening. The nature of the inhomogeneous broadening in this system has been studied by using fluorescence line narrowing and excitation line narrowing (ELN). It is shown that the energy distributions of different electronic states of Cf 4+ in this system are correlated. In the ELN experiments, reduced excitation linewidth was obtained when selectively monitoring fluorescence emission. A linear relation was observed between the excitation energies of crystal-field states of the 5 G 4' manifold and the fluorescence wavelength monitored across the inhomogeneous profile of a 5 G 6' -- 7 F 6' transition. Analysis of these results by means of a microscopic theory proposed by Laird and Skinner [J. Chem. Phys. 90, 3880 (1989)] has provided insights into the structural properties of this disordered system

  11. Line broadening by focusing

    International Nuclear Information System (INIS)

    Brito, A.L. de; Jabs, A.

    1983-01-01

    It is pointed out that the spectral width of a quasi-monochromatic light beam broadens when the beam is focused. A quantitative formula for this broadening is derived from classical wave theory. The effect is shown to explain some experiments on laser beams done by E. Panarella which that author has explained under the ad-hoc hypothesis that the frequency of the photons changes along with the intensity of the light beam. The line broadening by focusing might also contribute to gas ionization by incident light when the ionization potential is well above the mean photon energy. Some remarks are made on some direct applications of the Heisenberg relations in comparison with our treatment. (Author) [pt

  12. Level width broadening effect

    International Nuclear Information System (INIS)

    Zhang Jingshang

    2003-01-01

    In file-6 for double-differential cross sections, the level width broadening effect should be taken into account properly due to Heisenberg' uncertainty. Besides level width broadening effect, the energy resolution in the measurements is also needed in fitting measurement procedure. In general, the traditional normal Gaussian expansion is employed. However, to do so in this way the energy balance could not be held. For this reason, the deformed Gaussian expansion functions with exponential form for both the single energy point and continuous spectrum are introduced, with which the normalization and energy balance conditions could be held exactly in the analytical form. (author)

  13. Error performance analysis in downlink cellular networks with interference management

    KAUST Repository

    Afify, Laila H.; Elsawy, Hesham; Al-Naffouri, Tareq Y.; Alouini, Mohamed-Slim

    2015-01-01

    Modeling aggregate network interference in cellular networks has recently gained immense attention both in academia and industry. While stochastic geometry based models have succeeded to account for the cellular network geometry, they mostly

  14. Broadening the radiography spectrum

    International Nuclear Information System (INIS)

    Waswa, L.; Mutwasi, O.; Kioko, J.

    2006-05-01

    The text discuses the mammography in breast screening and evaluation of breast cancer; Small parts ultrasounds at plaza imaging solutions; role of a Radiographer in mammography-new perspective; Medical imaging education in africa; Caring for the paediatric patient as to broaden radiotherapy spectrum; Problems and challenges in care for children undergoing radiotherapy; Paediatric radiotherapy, management and side effects; The principles of pattern recognition of skeletal structures; the place of distance learning education in broadening the radiography spectrum; the curriculum and budgeting image; sonographer's guide; Computed radiography- X-Ray with vision; digital Radiography in Kenya today; Particle Therapy at Ithemba Labs; The role of lung perfusion and ventilation study in the evaluation of the pulmonary embolism and lastly, an overview of Head and neck treatment at Kenyatta National hospital radiotherapy

  15. Analysis of Drop Call Probability in Well Established Cellular ...

    African Journals Online (AJOL)

    Technology in Africa has increased over the past decade. The increase in modern cellular networks requires stringent quality of service (QoS). Drop call probability is one of the most important indices of QoS evaluation in a large scale well-established cellular network. In this work we started from an accurate statistical ...

  16. Cellular and Nuclear Alignment Analysis for Determining Epithelial Cell Chirality

    Science.gov (United States)

    Raymond, Michael J.; Ray, Poulomi; Kaur, Gurleen; Singh, Ajay V.; Wan, Leo Q.

    2015-01-01

    Left-right (LR) asymmetry is a biologically conserved property in living organisms that can be observed in the asymmetrical arrangement of organs and tissues and in tissue morphogenesis, such as the directional looping of the gastrointestinal tract and heart. The expression of LR asymmetry in embryonic tissues can be appreciated in biased cell alignment. Previously an in vitro chirality assay was reported by patterning multiple cells on microscale defined geometries and quantified the cell phenotype–dependent LR asymmetry, or cell chirality. However, morphology and chirality of individual cells on micropatterned surfaces has not been well characterized. Here, a Python-based algorithm was developed to identify and quantify immunofluorescence stained individual epithelial cells on multicellular patterns. This approach not only produces results similar to the image intensity gradient-based method reported previously, but also can capture properties of single cells such as area and aspect ratio. We also found that cell nuclei exhibited biased alignment. Around 35% cells were misaligned and were typically smaller and less elongated. This new imaging analysis approach is an effective tool for measuring single cell chirality inside multicellular structures and can potentially help unveil biophysical mechanisms underlying cellular chiral bias both in vitro and in vivo. PMID:26294010

  17. Modeling and Analysis of Cellular CDMA Forward Channel

    National Research Council Canada - National Science Library

    Tighe, Jan

    2001-01-01

    In this thesis, we develop the forward channel model for a DS-CDMA cellular system operating in a slow-flat Rayleigh fading and log normal shadowing environment, which incorporates the extended Hata...

  18. AHP-based spatial analysis of water quality impact assessment due to change in vehicular traffic caused by highway broadening in Sikkim Himalaya

    Science.gov (United States)

    Banerjee, Polash; Ghose, Mrinal Kanti; Pradhan, Ratika

    2018-05-01

    Spatial analysis of water quality impact assessment of highway projects in mountainous areas remains largely unexplored. A methodology is presented here for Spatial Water Quality Impact Assessment (SWQIA) due to highway-broadening-induced vehicular traffic change in the East district of Sikkim. Pollution load of the highway runoff was estimated using an Average Annual Daily Traffic-Based Empirical model in combination with mass balance model to predict pollution in the rivers within the study area. Spatial interpolation and overlay analysis were used for impact mapping. Analytic Hierarchy Process-Based Water Quality Status Index was used to prepare a composite impact map. Model validation criteria, cross-validation criteria, and spatial explicit sensitivity analysis show that the SWQIA model is robust. The study shows that vehicular traffic is a significant contributor to water pollution in the study area. The model is catering specifically to impact analysis of the concerned project. It can be an aid for decision support system for the project stakeholders. The applicability of SWQIA model needs to be explored and validated in the context of a larger set of water quality parameters and project scenarios at a greater spatial scale.

  19. Towards Broadening the Audience

    Science.gov (United States)

    Sakimoto, P. J.

    2008-06-01

    The strand Towards Broadening the Audience was intended to seed thoughtful conversations about building bridges for outreach programs across cultural barriers. Many participants spoke about progress in increasing the diversity of their outreach audiences, but it was new voices from time-honored sources that offered fundamentally new wisdom. From the religious traditions and tensions that mark the Holy Land came the simple concept of bringing unity through teaching the commonalities found in basic concepts of the observed sky. From Mayan traditions, both contemporary and ancient, came the reminder that the sky is intimately connected to all aspects of our lives. Astronomy outreach should therefore be a part of much larger family and community celebrations. Ideas such as these offer renewed hope for major advances in bringing space science outreach to much broader audiences. They tell us about the importance of learning from voices with perspectives different from our own, and of building partnerships based upon genuine cross-cultural understanding and mutual love of the sky.

  20. Three-dimensional analysis of cellular microstructures by computer simulation

    International Nuclear Information System (INIS)

    Hanson, K.; Morris, J.W. Jr.

    1977-06-01

    For microstructures of the ''cellular'' type (isotropic growth from a distribution of nuclei which form simultaneously), it is possible to construct an efficient code which will completely analyze the microstructure in three dimensions. Such a computer code for creating and storing the connected graph was constructed

  1. Motion Analysis of Thumb in Cellular Phone Use

    Directory of Open Access Journals (Sweden)

    Naotaka Sakai

    2010-01-01

    Full Text Available The thumb motion of 10 normal subjects during cellular phone use was measured using a reflective marker detection system to compare the maximum, minimum and range of flexion angles of the interphalangeal (IP, metacarpophalangeal (MP and carpometacarpal (CM joints. Two micro-reflective markers 3 mm in diameter were each placed on the dorsal surface of the distal phalanx, basal phalanx and metacarpal bone of the thumb. Three markers were placed on the dorsal hand in order to define the dorsal hand plane. Each subject pushed the 12 keys of a folding cellular phone with an 85-mm-long and 40-mm-wide keypad, sequentially from ‘1’ to ‘#’, and the pushing motion was recorded by six infrared video cameras for 12 seconds, using the VICON 612 system. The mean maximum flexion angle of the MP joint was significantly (p < .05 larger than the CM joint, and the mean minimum flexion angle of the CM joint was significantly (p < .01 smaller than the IP and MP joints. The mean range of motion of the IP joint was significantly (p < .05 larger than the MP and the CM joints. In a comparison of different key-pushing motions, only the CM joint was significantly (p < .05 larger in its range of motion. In conclusion, thumb motion on pushing the keys of the cellular phone was produced mainly by the MP and the CM joints. In addition, the ability to reach keys in different areas of the cellular phone keypad is regulated by changing the flexion angle of the CM joint.

  2. Analysis of cellular and extracellular DNA in fingerprints

    Energy Technology Data Exchange (ETDEWEB)

    Button, Julie M. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

    2014-09-09

    It has been previously shown that DNA can be recovered from latent fingerprints left on various surfaces [R. A. H. van Oorschot and M. K. Jones, Nature 387, 767 (1997)]. However, the source of the DNA, extracellular versus cellular origin, is difficult to determine. If the DNA is cellular, it is believed to belong to skin cells while extracellular DNA is believed to originate from body fluids such as sweat [D. J. Daly et. al, Forensic Sci. Int. Genet. 6, 41-46 (2012); V. V. Vlassov et. al, BioEssays 29, 654-667 (2007)]. The origin of the DNA in fingerprints has implications for processing and interpretation of forensic evidence. The determination of the origin of DNA in fingerprints is further complicated by the fact that the DNA in fingerprints tends to be at a very low quantity [R. A. H. van Oorschot and M. K. Jones, Nature 387, 767 (1997)]. This study examined fingerprints from five volunteers left on sterilized glass slides and plastic pens. Three fingerprints were left on each glass slide (thumb, index, and middle fingers) while the pens were held as if one was writing with them. The DNA was collected from the objects using the wet swabbing technique (TE buffer). Following collection, the cellular and extracellular components of each sample were separated using centrifugation and an acoustofluidics system. Centrifugation is still the primary separation technique utilized in forensics laboratories, while acoustic focusing uses sound waves to focus large particles (cells) into low pressure nodes, separating them from the rest of the sample matrix. After separation, all samples were quantified using real-time quantitative PCR (qPCR). The overall trend is that there is more DNA in the extracellular fractions than cellular fractions for both centrifugation and acoustofluidic processing. Additionally, more DNA was generally collected from the pen samples than the samples left on glass slides.

  3. A Fluid Model for Performance Analysis in Cellular Networks

    Directory of Open Access Journals (Sweden)

    Coupechoux Marceau

    2010-01-01

    Full Text Available We propose a new framework to study the performance of cellular networks using a fluid model and we derive from this model analytical formulas for interference, outage probability, and spatial outage probability. The key idea of the fluid model is to consider the discrete base station (BS entities as a continuum of transmitters that are spatially distributed in the network. This model allows us to obtain simple analytical expressions to reveal main characteristics of the network. In this paper, we focus on the downlink other-cell interference factor (OCIF, which is defined for a given user as the ratio of its outer cell received power to its inner cell received power. A closed-form formula of the OCIF is provided in this paper. From this formula, we are able to obtain the global outage probability as well as the spatial outage probability, which depends on the location of a mobile station (MS initiating a new call. Our analytical results are compared to Monte Carlo simulations performed in a traditional hexagonal network. Furthermore, we demonstrate an application of the outage probability related to cell breathing and densification of cellular networks.

  4. Broadening nanotechnology's impact on development

    NARCIS (Netherlands)

    Beumer, K.

    2016-01-01

    Discussions about nanotechnology and development focus on applications that directly address the needs of the world’s poor. Nanotechnology can certainly make an impact in the fight against global poverty, but we need to broaden our imagination.

  5. Doppler broadening and its contribution to Compton energy-absorption cross sections: An analysis of the Compton component in terms of mass-energy absorption coefficient

    International Nuclear Information System (INIS)

    Rao, D.V.; Takeda, T.; Itai, Y.; Akatsuka, T.; Cesareo, R.; Brunetti, A.; Gigante, G.E.

    2002-01-01

    Compton energy absorption cross sections are calculated using the formulas based on a relativistic impulse approximation to assess the contribution of Doppler broadening and to examine the Compton profile literature and explore what, if any, effect our knowledge of this line broadening has on the Compton component in terms of mass-energy absorption coefficient. Compton energy-absorption cross sections are evaluated for all elements, Z=1-100, and for photon energies 1 keV-100 MeV. Using these cross sections, the Compton component of the mass-energy absorption coefficient is derived in the energy region from 1 keV to 1 MeV for all the elements Z=1-100. The electron momentum prior to the scattering event should cause a Doppler broadening of the Compton line. The momentum resolution function is evaluated in terms of incident and scattered photon energy and scattering angle. The overall momentum resolution of each contribution is estimated for x-ray and γ-ray energies of experimental interest in the angular region 1 deg. -180 deg. . Also estimated is the Compton broadening using nonrelativistic formula in the angular region 1 deg. -180 deg., for 17.44, 22.1, 58.83, and 60 keV photons for a few elements (H, C, N, O, P, S, K, and Ca) of biological importance

  6. Doppler Broadening and its Contribution to Compton Energy-Absorption Cross Sections: An Analysis of the Compton Component in Terms of Mass-Energy Absorption Coefficient

    Science.gov (United States)

    Rao, D. V.; Takeda, T.; Itai, Y.; Akatsuka, T.; Cesareo, R.; Brunetti, A.; Gigante, G. E.

    2002-09-01

    Compton energy absorption cross sections are calculated using the formulas based on a relativistic impulse approximation to assess the contribution of Doppler broadening and to examine the Compton profile literature and explore what, if any, effect our knowledge of this line broadening has on the Compton component in terms of mass-energy absorption coefficient. Compton energy-absorption cross sections are evaluated for all elements, Z=1-100, and for photon energies 1 keV-100 MeV. Using these cross sections, the Compton component of the mass-energy absorption coefficient is derived in the energy region from 1 keV to 1 MeV for all the elements Z=1-100. The electron momentum prior to the scattering event should cause a Doppler broadening of the Compton line. The momentum resolution function is evaluated in terms of incident and scattered photon energy and scattering angle. The overall momentum resolution of each contribution is estimated for x-ray and γ-ray energies of experimental interest in the angular region 1°-180°. Also estimated is the Compton broadening using nonrelativistic formula in the angular region 1°-180°, for 17.44, 22.1, 58.83, and 60 keV photons for a few elements (H, C, N, O, P, S, K, and Ca) of biological importance.

  7. Analysis of Cellular DNA Content by Flow Cytometry.

    Science.gov (United States)

    Darzynkiewicz, Zbigniew; Huang, Xuan; Zhao, Hong

    2017-11-01

    Cellular DNA content can be measured by flow cytometry with the aim of : (1) revealing cell distribution within the major phases of the cell cycle, (2) estimating frequency of apoptotic cells with fractional DNA content, and/or (3) disclosing DNA ploidy of the measured cell population. In this unit, simple and universally applicable methods for staining fixed cells are presented, as are methods that utilize detergents and/or proteolytic treatment to permeabilize cells and make DNA accessible to fluorochrome. Additionally, supravital cell staining with Hoechst 33342, which is primarily used for sorting live cells based on DNA-content differences for their subsequent culturing, is described. Also presented are methods for staining cell nuclei isolated from paraffin-embedded tissues. Available algorithms are listed for deconvolution of DNA-content-frequency histograms to estimate percentage of cells in major phases of the cell cycle and frequency of apoptotic cells with fractional DNA content. © 2017 by John Wiley & Sons, Inc. Copyright © 2017 John Wiley and Sons, Inc.

  8. Adaptive pressure-controlled cellular structures for shape morphing I: design and analysis

    International Nuclear Information System (INIS)

    Luo, Quantian; Tong, Liyong

    2013-01-01

    This work investigates adaptive bio-inspired pressure cellular structures for shape morphing. Optimum designs for cellular structures with void and pressure cells are proposed and then structural analyses are conducted. In the present design, a unit cell is comprised of straight and curved walls. When compressed air is pumped into a pressure cell, the curved walls deform in bending due to the pressure difference in two adjacent cells that leads to overall structural deformation in extension. One-dimensional actuation strain up to 35% can be theoretically achieved. In part I, we present basic design concepts and cellular mechanics. Unlike conventional structural analysis for cellular structures, a statically indeterminate unit cell is considered and novel analytical formulations are derived for the present pressurized cellular structures in linear and nonlinear analyses. In part II, we will present experimental testing and finite element analysis to demonstrate the feasibility of the present pressurized cellular actuators for morphing wings and to validate the present cellular mechanics formulations. (paper)

  9. Label-Free Analysis of Cellular Lipid Droplet Formation by Non-Linear Microscopy

    Science.gov (United States)

    Schie, Iwan W.

    Cellular lipid droplets (LD) are cellular organelles that can be found in every cell type. Recent research indicates that cellular LD are involved in a large number of cellular metabolic functions, such as lipid metabolism, protection from lipotoxicity, protein storage and degradation, and many more. LD formation is frequently associated with adverse health effects, i.e. alcoholic and non-alcoholic fatty liver disease, diabetes type-2, as well as many cardiovascular disorders. Despite their wide presence, LDs are the least studied and most poorly understood cellular organelles. Typically, LDs are investigated using fluorescence-based techniques that require staining with exogenous fluorophores. Other techniques, e.g. biochemical assays, require the destruction of cells that prohibit the analysis of living cells. Therefore, in my thesis research I developed a novel compound fast-scanning nonlinear optical microscope equipped with the ability to also acquire Raman spectra at specific image locations. This system allows us to image label-free cellular LD formation in living cells and analyze the composition of single cellular LDs. Images can be acquired at near video-rate (˜16 frames/s). Furthermore, the system has the ability to acquire very large images of tissue of up to 7.5x15 cm2 total area by stitching together scans with dimensions of 1x1 mm2 in less than 1 minute. The system also enables the user to acquire Raman spectra from points of interest in the multiphoton images and provides chemically-specific data from sample volumes as small as 1 femtoliter. In my thesis I used this setup to determine the effects of VLDL lipolysis products on primary rat hepatocytes. By analyzing the Raman spectra and comparing the peak ratios for saturated and unsaturated fatty acid it was determined that the small cellular LD are highly saturated, while large cellular LDs contain mostly unsaturated lipids. Furthermore, I established a method to determine the specific contribution

  10. Design of suitable carrier buffer for free-flow zone electrophoresis by charge-to-mass ratio and band broadening analysis.

    Science.gov (United States)

    Kong, Fan-Zhi; Yang, Ying; He, Yu-Chen; Zhang, Qiang; Li, Guo-Qing; Fan, Liu-Yin; Xiao, Hua; Li, Shan; Cao, Cheng-Xi

    2016-09-01

    In this work, charge-to-mass ratio (C/M) and band broadening analyses were combined to provide better guidance for the design of free-flow zone electrophoresis carrier buffer (CB). First, the C/M analyses of hemoglobin and C-phycocyanin (C-PC) under different pH were performed by CLC Protein Workbench software. Second, band dispersion due to the initial bandwidth, diffusion, and hydrodynamic broadening were discussed, respectively. Based on the analyses of the C/M and band broadening, a better guidance for preparation of free-flow zone electrophoresis CB was obtained. Series of experiments were performed to validate the proposed method. The experimental data showed high accordance with our prediction allowing the CB to be prepared easily with our proposed method. To further evaluate this method, C-PC was purified from crude extracts of Spirulina platensis with the selected separation condition. Results showed that C-PC was well separated from other phycobiliproteins that have similar physicochemical properties, and analytical grade product with purity up to 4.5 (A620/A280) was obtained. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  11. Flow cytometric life cycle analysis in cellular radiation biology

    International Nuclear Information System (INIS)

    Wood, J.C.S.

    1982-01-01

    Three approaches to flow cytometric histogram analysis were developed: (1) differential histogram analysis, (2) DNA histogram analysis, and (3) multiparameter data analysis. These techniques were applied to an important unresolved problem in radiation biology. The initial responses to irradiation of a mammalian cell which occur during the first two cell cycles following the irradiation are of considerable interest to the radiation biologist. During the first two post-irradiation cell cycles, cells which ultimately will survive repair radiation-induced damage, while some cells begin to express some of the radiation-induced nuclear and chomatin damage. Caffeine- and thymidine-treated, and untreated gamma-irradiated cell populations were studied with respect to the radiation-induced G2 delay, deficient DNA synthesis, and the appearance of cells with abnormal DNA contents. It is hypothesized that the measured deficiency in DNA synthesis observed in the first post-irradiation cell cycle may be a result of daughter cells from abnormal first post-irradiation mitoses

  12. Whole blood analysis rotor assembly having removable cellular sedimentation bowl

    Science.gov (United States)

    Burtis, C.A.; Johnson, W.F.

    1975-08-26

    A rotor assembly for performing photometric analyses using whole blood samples is described. Following static loading of a gross blood sample within a centrally located, removable, cell sedimentation bowl, the red blood cells in the gross sample are centrifugally separated from the plasma, the plasm displaced from the sedimentation bowl, and measured subvolumes of plasma distributed to respective sample analysis cuvettes positioned in an annular array about the rotor periphery. Means for adding reagents to the respective cuvettes are also described. (auth)

  13. Further results on passivity analysis of delayed cellular neural networks

    International Nuclear Information System (INIS)

    Park, Ju H.

    2007-01-01

    The passivity condition for delayed neural networks with uncertainties is considered in this article. From simple extension of a recent work for stability analysis of the system, a new criterion for the passivity of the system is derived in terms of linear matrix inequalities (LMIs), which can be easily solved by using various convex optimization algorithms. A numerical example is given to show the usefulness of our result

  14. Analysis of Blocking Rate and Bandwidth Usage of Mobile IPTV Services in Wireless Cellular Networks

    Directory of Open Access Journals (Sweden)

    Mingfu Li

    2014-01-01

    Full Text Available Mobile IPTV services over wireless cellular networks become more and more popular, owing to the significant growth in access bandwidth of wireless cellular networks such as 3G/4G and WiMAX. However, the spectrum resources of wireless cellular networks is rare. How to enhance the spectral efficiency of mobile networks becomes an important issue. Unicast, broadcast, and multicast are the most important transport schemes for offering mobile IPTV services over wireless cellular networks. Therefore, bandwidth usages and blocking rates of unicast, broadcast, and multicast IPTV services were analyzed and compared in this paper. Simulations were also conducted to validate the analytical results. Numerical results demonstrate that the presented analysis is correct, and multicast scheme achieves the best bandwidth usage and blocking rate performance, relative to the other two schemes.

  15. Methods for the Analysis of Protein Phosphorylation-Mediated Cellular Signaling Networks

    Science.gov (United States)

    White, Forest M.; Wolf-Yadlin, Alejandro

    2016-06-01

    Protein phosphorylation-mediated cellular signaling networks regulate almost all aspects of cell biology, including the responses to cellular stimulation and environmental alterations. These networks are highly complex and comprise hundreds of proteins and potentially thousands of phosphorylation sites. Multiple analytical methods have been developed over the past several decades to identify proteins and protein phosphorylation sites regulating cellular signaling, and to quantify the dynamic response of these sites to different cellular stimulation. Here we provide an overview of these methods, including the fundamental principles governing each method, their relative strengths and weaknesses, and some examples of how each method has been applied to the analysis of complex signaling networks. When applied correctly, each of these techniques can provide insight into the topology, dynamics, and regulation of protein phosphorylation signaling networks.

  16. Analysis of blocking rate and bandwidth usage of mobile IPTV services in wireless cellular networks.

    Science.gov (United States)

    Li, Mingfu

    2014-01-01

    Mobile IPTV services over wireless cellular networks become more and more popular, owing to the significant growth in access bandwidth of wireless cellular networks such as 3G/4G and WiMAX. However, the spectrum resources of wireless cellular networks is rare. How to enhance the spectral efficiency of mobile networks becomes an important issue. Unicast, broadcast, and multicast are the most important transport schemes for offering mobile IPTV services over wireless cellular networks. Therefore, bandwidth usages and blocking rates of unicast, broadcast, and multicast IPTV services were analyzed and compared in this paper. Simulations were also conducted to validate the analytical results. Numerical results demonstrate that the presented analysis is correct, and multicast scheme achieves the best bandwidth usage and blocking rate performance, relative to the other two schemes.

  17. Broadening the spectrum through curriculum

    International Nuclear Information System (INIS)

    Engel-Hills P

    2006-01-01

    Radiography has experienced changes and challenges from a number of sources. The rapid technological changes in imaging an radiation treatment, changes in the professional context and social transformation have had an impact on the shape and structure of the radiography curriculum. It too must change to prepare graduates for the broadening radiography spectrum

  18. Doppler broadening of cross sections

    International Nuclear Information System (INIS)

    Buckler, P.A.C.; Pull, I.C.

    1962-12-01

    Expressions for temperature dependent cross-sections in terms of resonance parameters are obtained, involving generalisations of the conventional Doppler functions, ψ and φ. Descriptions of Fortran sub-routines, which calculate broadened cross-sections in accordance with the derived formulae, are included. (author)

  19. Spatiotemporal Stochastic Modeling of IoT Enabled Cellular Networks: Scalability and Stability Analysis

    KAUST Repository

    Gharbieh, Mohammad; Elsawy, Hesham; Bader, Ahmed; Alouini, Mohamed-Slim

    2017-01-01

    The Internet of Things (IoT) is large-scale by nature, which is manifested by the massive number of connected devices as well as their vast spatial existence. Cellular networks, which provide ubiquitous, reliable, and efficient wireless access, will play fundamental rule in delivering the first-mile access for the data tsunami to be generated by the IoT. However, cellular networks may have scalability problems to provide uplink connectivity to massive numbers of connected things. To characterize the scalability of cellular uplink in the context of IoT networks, this paper develops a traffic-aware spatiotemporal mathematical model for IoT devices supported by cellular uplink connectivity. The developed model is based on stochastic geometry and queueing theory to account for the traffic requirement per IoT device, the different transmission strategies, and the mutual interference between the IoT devices. To this end, the developed model is utilized to characterize the extent to which cellular networks can accommodate IoT traffic as well as to assess and compare three different transmission strategies that incorporate a combination of transmission persistency, backoff, and power-ramping. The analysis and the results clearly illustrate the scalability problem imposed by IoT on cellular network and offer insights into effective scenarios for each transmission strategy.

  20. Spatiotemporal Stochastic Modeling of IoT Enabled Cellular Networks: Scalability and Stability Analysis

    KAUST Repository

    Gharbieh, Mohammad

    2017-05-02

    The Internet of Things (IoT) is large-scale by nature, which is manifested by the massive number of connected devices as well as their vast spatial existence. Cellular networks, which provide ubiquitous, reliable, and efficient wireless access, will play fundamental rule in delivering the first-mile access for the data tsunami to be generated by the IoT. However, cellular networks may have scalability problems to provide uplink connectivity to massive numbers of connected things. To characterize the scalability of cellular uplink in the context of IoT networks, this paper develops a traffic-aware spatiotemporal mathematical model for IoT devices supported by cellular uplink connectivity. The developed model is based on stochastic geometry and queueing theory to account for the traffic requirement per IoT device, the different transmission strategies, and the mutual interference between the IoT devices. To this end, the developed model is utilized to characterize the extent to which cellular networks can accommodate IoT traffic as well as to assess and compare three different transmission strategies that incorporate a combination of transmission persistency, backoff, and power-ramping. The analysis and the results clearly illustrate the scalability problem imposed by IoT on cellular network and offer insights into effective scenarios for each transmission strategy.

  1. Generation and Comprehensive Analysis of an Influenza Virus Polymerase Cellular Interaction Network▿†§

    Science.gov (United States)

    Tafforeau, Lionel; Chantier, Thibault; Pradezynski, Fabrine; Pellet, Johann; Mangeot, Philippe E.; Vidalain, Pierre-Olivier; Andre, Patrice; Rabourdin-Combe, Chantal; Lotteau, Vincent

    2011-01-01

    The influenza virus transcribes and replicates its genome inside the nucleus of infected cells. Both activities are performed by the viral RNA-dependent RNA polymerase that is composed of the three subunits PA, PB1, and PB2, and recent studies have shown that it requires host cell factors to transcribe and replicate the viral genome. To identify these cellular partners, we generated a comprehensive physical interaction map between each polymerase subunit and the host cellular proteome. A total of 109 human interactors were identified by yeast two-hybrid screens, whereas 90 were retrieved by literature mining. We built the FluPol interactome network composed of the influenza virus polymerase (PA, PB1, and PB2) and the nucleoprotein NP and 234 human proteins that are connected through 279 viral-cellular protein interactions. Analysis of this interactome map revealed enriched cellular functions associated with the influenza virus polymerase, including host factors involved in RNA polymerase II-dependent transcription and mRNA processing. We confirmed that eight influenza virus polymerase-interacting proteins are required for virus replication and transcriptional activity of the viral polymerase. These are involved in cellular transcription (C14orf166, COPS5, MNAT1, NMI, and POLR2A), translation (EIF3S6IP), nuclear transport (NUP54), and DNA repair (FANCG). Conversely, we identified PRKRA, which acts as an inhibitor of the viral polymerase transcriptional activity and thus is required for the cellular antiviral response. PMID:21994455

  2. Generation and comprehensive analysis of an influenza virus polymerase cellular interaction network.

    Science.gov (United States)

    Tafforeau, Lionel; Chantier, Thibault; Pradezynski, Fabrine; Pellet, Johann; Mangeot, Philippe E; Vidalain, Pierre-Olivier; Andre, Patrice; Rabourdin-Combe, Chantal; Lotteau, Vincent

    2011-12-01

    The influenza virus transcribes and replicates its genome inside the nucleus of infected cells. Both activities are performed by the viral RNA-dependent RNA polymerase that is composed of the three subunits PA, PB1, and PB2, and recent studies have shown that it requires host cell factors to transcribe and replicate the viral genome. To identify these cellular partners, we generated a comprehensive physical interaction map between each polymerase subunit and the host cellular proteome. A total of 109 human interactors were identified by yeast two-hybrid screens, whereas 90 were retrieved by literature mining. We built the FluPol interactome network composed of the influenza virus polymerase (PA, PB1, and PB2) and the nucleoprotein NP and 234 human proteins that are connected through 279 viral-cellular protein interactions. Analysis of this interactome map revealed enriched cellular functions associated with the influenza virus polymerase, including host factors involved in RNA polymerase II-dependent transcription and mRNA processing. We confirmed that eight influenza virus polymerase-interacting proteins are required for virus replication and transcriptional activity of the viral polymerase. These are involved in cellular transcription (C14orf166, COPS5, MNAT1, NMI, and POLR2A), translation (EIF3S6IP), nuclear transport (NUP54), and DNA repair (FANCG). Conversely, we identified PRKRA, which acts as an inhibitor of the viral polymerase transcriptional activity and thus is required for the cellular antiviral response.

  3. Cellular Analysis of Boltzmann Most Probable Ideal Gas Statistics

    Science.gov (United States)

    Cahill, Michael E.

    2018-04-01

    Exact treatment of Boltzmann's Most Probable Statistics for an Ideal Gas of Identical Mass Particles having Translational Kinetic Energy gives a Distribution Law for Velocity Phase Space Cell j which relates the Particle Energy and the Particle Population according toB e(j) = A - Ψ(n(j) + 1)where A & B are the Lagrange Multipliers and Ψ is the Digamma Function defined byΨ(x + 1) = d/dx ln(x!)A useful sufficiently accurate approximation for Ψ is given byΨ(x +1) ≈ ln(e-γ + x)where γ is the Euler constant (≈.5772156649) & so the above distribution equation is approximatelyB e(j) = A - ln(e-γ + n(j))which can be inverted to solve for n(j) givingn(j) = (eB (eH - e(j)) - 1) e-γwhere B eH = A + γ& where B eH is a unitless particle energy which replaces the parameter A. The 2 approximate distribution equations imply that eH is the highest particle energy and the highest particle population isnH = (eB eH - 1) e-γwhich is due to the facts that population becomes negative if e(j) > eH and kinetic energy becomes negative if n(j) > nH.An explicit construction of Cells in Velocity Space which are equal in volume and homogeneous for almost all cells is shown to be useful in the analysis.Plots for sample distribution properties using e(j) as the independent variable are presented.

  4. Effect of crumb cellular structure characterized by image analysis on cake softness.

    Science.gov (United States)

    Dewaest, Marine; Villemejane, Cindy; Berland, Sophie; Neron, Stéphane; Clement, Jérôme; Verel, Aliette; Michon, Camille

    2017-10-04

    Sponge cake is a cereal product characterized by an aerated crumb and appreciated for its softness. When formulating such product, it is interesting to be able to characterize the crumb structure using image analysis and to bring knowledge about the effects of the crumb cellular structure on its mechanical properties which contribute to softness. An image analysis method based on mathematical morphology was adapted from the one developed for bread crumb. In order to evaluate its ability to discriminate cellular structures, series of cakes were prepared using two rather similar emulsifiers but also using flours with different aging times before use. The mechanical properties of the crumbs of these different cakes were also characterized. It allowed a cell structure classification taking into account cell size and homogeneity, but also cell wall thickness and the number of holes in the walls. Interestingly, the cellular structure differences had a larger impact on the aerated crumb Young modulus than the wall firmness. Increasing the aging time of flour before use leads to the production of firmer crumbs due to coarser and inhomogeneous cellular structures. Changing the composition of the emulsifier may change the cellular structure and, depending on the type of the structural changes, have an impact on the firmness of the crumb. Cellular structure rather than cell wall firmness was found to impact cake crumb firmness. The new fast and automated tool for cake crumb structure analysis allows detecting quickly any change in cell size or homogeneity but also cell wall thickness and number of holes in the walls (openness degree). To obtain a softer crumb, it seems that options are to decrease the cell size and the cell wall thickness and/or to increase the openness degree. It is then possible to easily evaluate the effects of ingredients (flour composition, emulsifier …) or change in the process on the crumb structure and thus its softness. Moreover, this image

  5. Modeling and Analysis of Cellular Networks using Stochastic Geometry: A Tutorial

    KAUST Repository

    Elsawy, Hesham; Salem, Ahmed Sultan; Alouini, Mohamed-Slim; Win, Moe Z.

    2016-01-01

    This paper presents a tutorial on stochastic geometry (SG) based analysis for cellular networks. This tutorial is distinguished by its depth with respect to wireless communication details and its focus on cellular networks. The paper starts by modeling and analyzing the baseband interference in a baseline single-tier downlink cellular network with single antenna base stations and universal frequency reuse. Then, it characterizes signal-to-interference-plus-noise-ratio (SINR) and its related performance metrics. In particular, a unified approach to conduct error probability, outage probability, and transmission rate analysis is presented. Although the main focus of the paper is on cellular networks, the presented unified approach applies for other types of wireless networks that impose interference protection around receivers. The paper then extends the unified approach to capture cellular network characteristics (e.g., frequency reuse, multiple antenna, power control, etc.). It also presents numerical examples associated with demonstrations and discussions. To this end, the paper highlights the state-of-the- art research and points out future research directions.

  6. Modeling and Analysis of Cellular Networks using Stochastic Geometry: A Tutorial

    KAUST Repository

    Elsawy, Hesham

    2016-11-03

    This paper presents a tutorial on stochastic geometry (SG) based analysis for cellular networks. This tutorial is distinguished by its depth with respect to wireless communication details and its focus on cellular networks. The paper starts by modeling and analyzing the baseband interference in a baseline single-tier downlink cellular network with single antenna base stations and universal frequency reuse. Then, it characterizes signal-to-interference-plus-noise-ratio (SINR) and its related performance metrics. In particular, a unified approach to conduct error probability, outage probability, and transmission rate analysis is presented. Although the main focus of the paper is on cellular networks, the presented unified approach applies for other types of wireless networks that impose interference protection around receivers. The paper then extends the unified approach to capture cellular network characteristics (e.g., frequency reuse, multiple antenna, power control, etc.). It also presents numerical examples associated with demonstrations and discussions. To this end, the paper highlights the state-of-the- art research and points out future research directions.

  7. Strength analysis and modeling of cellular lattice structures manufactured using selective laser melting for tooling applications

    DEFF Research Database (Denmark)

    Mahshid, Rasoul; Hansen, Hans Nørgaard; Loft Højbjerre, Klaus

    2016-01-01

    in injection molding tools and lattice structures. This research examines the effect of cellular lattice structures on the strength of workpieces additively manufactured from ultra high-strength steel powder. Two commercial SLM machines are used to fabricate cellular samples based on four architectures— solid...... with experimental data and it is shown that they agree well. The results from this research show that using lattice structures significantly reduces the strength of material with respect to solid samples while indicating no serious increase of strength compared to hollow structures. In combination with an analysis...

  8. A comparative analysis of electronic and molecular quantum dot cellular automata

    International Nuclear Information System (INIS)

    Umamahesvari, H.; Ajitha, D.

    2015-01-01

    This paper presents a comparative analysis of electronic quantum-dot cellular automata (EQCA) and Magnetic quantum dot Cellular Automata (MQCA). QCA is a computing paradigm that encodes and processes information by the position of individual electrons. To enhance the high dense and ultra-low power devices, various researches have been actively carried out to find an alternative way to continue and follow Moore’s law, so called “beyond CMOS technology”. There have been several proposals for physically implementing QCA, EQCA and MQCA are the two important QCAs reported so far. This paper provides a comparative study on these two QCAs

  9. Numerical Analysis of Characteristics of Cellular Counterflow Diffusion Flames near Radiative Extinction Limit

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Su Ryong [Seoul National University of Technology, Seoul (Korea, Republic of)

    2014-06-15

    Nonlinear characteristics of cellular counterflow diffusion flame near the radiative extinction limit at large Damköhler number are numerically investigated. Lewis number is assumed to be 0.5 and flame evolution is calculated by imposing an infinitesimal disturbance to a one-dimensional(1-D) steady state flame. The early stage of nonlinear development is very similar to that predicted in a linear stability analysis. The disturbance with the wavenumber of the fastest growing mode emerges and grows gradually. Eventual, an alternating pattern of reacting and quenching stripes is developed. The cellular flame temperature is higher than that of 1-D flame because of the gain of the total enthalpy. As the Damköhler number is further increased, the shape of the cell becomes circular to increase the surface area per unit reacting volume. The cellular flames do not extinguish but survive even above the 1-D steady state extinction condition.

  10. Methodological considerations for global analysis of cellular FLIM/FRET measurements

    Science.gov (United States)

    Adbul Rahim, Nur Aida; Pelet, Serge; Kamm, Roger D.; So, Peter T. C.

    2012-02-01

    Global algorithms can improve the analysis of fluorescence energy transfer (FRET) measurement based on fluorescence lifetime microscopy. However, global analysis of FRET data is also susceptible to experimental artifacts. This work examines several common artifacts and suggests remedial experimental protocols. Specifically, we examined the accuracy of different methods for instrument response extraction and propose an adaptive method based on the mean lifetime of fluorescent proteins. We further examined the effects of image segmentation and a priori constraints on the accuracy of lifetime extraction. Methods to test the applicability of global analysis on cellular data are proposed and demonstrated. The accuracy of global fitting degrades with lower photon count. By systematically tracking the effect of the minimum photon count on lifetime and FRET prefactors when carrying out global analysis, we demonstrate a correction procedure to recover the correct FRET parameters, allowing us to obtain protein interaction information even in dim cellular regions with photon counts as low as 100 per decay curve.

  11. The correlation between apparent diffusion coefficient and tumor cellularity in patients: a meta-analysis.

    Science.gov (United States)

    Chen, Lihua; Liu, Min; Bao, Jing; Xia, Yunbao; Zhang, Jiuquan; Zhang, Lin; Huang, Xuequan; Wang, Jian

    2013-01-01

    To perform a meta-analysis exploring the correlation between the apparent diffusion coefficient (ADC) and tumor cellularity in patients. We searched medical and scientific literature databases for studies discussing the correlation between the ADC and tumor cellularity in patients. Only studies that were published in English or Chinese prior to November 2012 were considered for inclusion. Summary correlation coefficient (r) values were extracted from each study, and 95% confidence intervals (CIs) were calculated. Sensitivity and subgroup analyses were performed to investigate potential heterogeneity. Of 189 studies, 28 were included in the meta-analysis, comprising 729 patients. The pooled r for all studies was -0.57 (95% CI: -0.62, -0.52), indicating notable heterogeneity (Pcorrelation between the ADC and cellularity for brain tumors. There was no notable evidence of publication bias. There is a strong negative correlation between the ADC and tumor cellularity in patients, particularly in the brain. However, larger, prospective studies are warranted to validate these findings in other cancer types.

  12. Network analysis of oyster transcriptome revealed a cascade of cellular responses during recovery after heat shock.

    Directory of Open Access Journals (Sweden)

    Lingling Zhang

    Full Text Available Oysters, as a major group of marine bivalves, can tolerate a wide range of natural and anthropogenic stressors including heat stress. Recent studies have shown that oysters pretreated with heat shock can result in induced heat tolerance. A systematic study of cellular recovery from heat shock may provide insights into the mechanism of acquired thermal tolerance. In this study, we performed the first network analysis of oyster transcriptome by reanalyzing microarray data from a previous study. Network analysis revealed a cascade of cellular responses during oyster recovery after heat shock and identified responsive gene modules and key genes. Our study demonstrates the power of network analysis in a non-model organism with poor gene annotations, which can lead to new discoveries that go beyond the focus on individual genes.

  13. A broadened typology on energy and security

    International Nuclear Information System (INIS)

    Johansson, Bengt

    2013-01-01

    A broadened typology describing the interconnection between energy and security is developed in this paper, with the aim of improving understanding of the relationship between energy and security by applying different research and policy perspectives. One approach involves studying energy as an object exposed to security threats, using concepts such as security of supply or security of demand. Another approach involves studying the role of the energy system as the subject in generating or enhancing insecurity. The latter approach includes studying the conflict-generating potential inherent in the economic value of energy, the risk of accidents and antagonistic attacks to energy infrastructure and the security risks related to the negative environmental impact of the energy system. In order to make a comprehensive analysis of the security consequences of proposed energy policies or strategies, all these aspects should be taken into account to varying degrees. The typology proposed here could be a valuable tool for ensuring that all security aspects have been considered. - Highlights: • The paper presents a broadened typology of energy and security, useful for policy analysis. • The energy system can be an object for security threats and as a subject generating or contributing to insecurity. • Energy as an object for security threats includes the concepts of security of supply and security of demand. • The economic value of energy can contribute to insecurity. • Technological and environmental risks of specific energy systems also provide potential threats to human security

  14. Correlation Between Minimum Apparent Diffusion Coefficient (ADCmin) and Tumor Cellularity: A Meta-analysis.

    Science.gov (United States)

    Surov, Alexey; Meyer, Hans Jonas; Wienke, Andreas

    2017-07-01

    Diffusion-weighted imaging (DWI) is a magnetic resonance imaging (MRI) technique based on measure of water diffusion that can provide information about tissue microstructure, especially about cell count. Increase of cell density induces restriction of water diffusion and decreases apparent diffusion coefficient (ADC). ADC can be divided into three sub-parameters: ADC minimum or ADC min , mean ADC or ADC mean and ADC maximum or ADC max Some studies have suggested that ADC min shows stronger correlations with cell count in comparison to other ADC fractions and may be used as a parameter for estimation of tumor cellularity. The aim of the present meta-analysis was to summarize correlation coefficients between ADC min and cellularity in different tumors based on large patient data. For this analysis, MEDLINE database was screened for associations between ADC and cell count in different tumors up to September 2016. For this work, only data regarding ADC min were included. Overall, 12 publications with 317 patients were identified. Spearman's correlation coefficient was used to analyze associations between ADC min and cellularity. The reported Pearson correlation coefficients in some publications were converted into Spearman correlation coefficients. The pooled correlation coefficient for all included studies was ρ=-0.59 (95% confidence interval (CI)=-0.72 to -0.45), heterogeneity Tau 2 =0.04 (pcorrelated moderately with tumor cellularity. The calculated correlation coefficient is not stronger in comparison to the reported coefficient for ADC mean and, therefore, ADC min does not represent a better means to reflect cellularity. Copyright© 2017, International Institute of Anticancer Research (Dr. George J. Delinasios), All rights reserved.

  15. Low arousing positive affect broadens visual attention and alters the thought-action repertoire while broadened visual attention does not

    Directory of Open Access Journals (Sweden)

    Daniel Thomas Jäger

    2016-10-01

    Full Text Available The Broaden-and-Build Theory states that positive emotions broaden cognition and therefore build personal resources. However, missing theoretical precision regarding the interaction of the cognitive processes involved offers a variety of possible explanations for the mechanisms of broadening and building. In Experiment 1 we tested the causality assumption which states that positive emotions first broaden visual attention which in turn leads to broadened cognition. We examined the effects of a broadened, narrowed or neutral attentional scope of 72 subjects (30 men on their momentary thought-action repertoire. Results showed that there were no significant differences between groups regarding the breadth or the content of the thought-action repertoire. In Experiment 2 we studied the non-causality hypothesis which assumes a non-causal relationship between cognitive processes. We did so by investigating the effects of negative, neutral, and positive affect on the visual attentional scope of 85 subjects (41 men in Experiment 2a, as well as on the thought-action repertoire of 85 participants (42 men in Experiment 2b. Results revealed an attentional broadening effect in Experiment 2a but no differences between groups concerning the breadth of the thought-action repertoire in Experiment 2b. However, a theory driven content analysis showed that positive affect promoted social actions whereas negative affect endorsed resource protecting actions. Thus, our results favor the non-causality assumption. Moreover, results indicate that positive emotions do not target personal resources in general but rather resources associated with social behavior. In conclusion, we argue that the Broaden-and-Build Theory should be refined.

  16. An analysis of global robust stability of uncertain cellular neural networks with discrete and distributed delays

    International Nuclear Information System (INIS)

    Park, Ju H.

    2007-01-01

    This paper considers the robust stability analysis of cellular neural networks with discrete and distributed delays. Based on the Lyapunov stability theory and linear matrix inequality (LMI) technique, a novel stability criterion guaranteeing the global robust convergence of the equilibrium point is derived. The criterion can be solved easily by various convex optimization algorithms. An example is given to illustrate the usefulness of our results

  17. Uplink Interference Analysis for Two-tier Cellular Networks with Diverse Users under Random Spatial Patterns

    OpenAIRE

    Bao, Wei; Liang, Ben

    2013-01-01

    Multi-tier architecture improves the spatial reuse of radio spectrum in cellular networks, but it introduces complicated heterogeneity in the spatial distribution of transmitters, which brings new challenges in interference analysis. In this work, we present a stochastic geometric model to evaluate the uplink interference in a two-tier network considering multi-type users and base stations. Each type of tier-1 users and tier-2 base stations are modeled as independent homogeneous Poisson point...

  18. Analysis And Augmentation Of Timing Advance Based Geolocation In Lte Cellular Networks

    Science.gov (United States)

    2016-12-01

    measurements to validate TA-based positioning approaches in LTE . Their approach did not, however, focus on characterizing the TA. Rather, similar to...UE will measure the time difference of arrival of the LTE Positioning Reference Signal (PRS) from multiple eNBs. This information is then sent to a...NAVAL POSTGRADUATE SCHOOL MONTEREY, CALIFORNIA DISSERTATION ANALYSIS AND AUGMENTATION OF TIMING ADVANCE-BASED GEOLOCATION IN LTE CELLULAR NETWORKS by

  19. A density distribution algorithm for bone incorporating local orthotropy, modal analysis and theories of cellular solids.

    Science.gov (United States)

    Impelluso, Thomas J

    2003-06-01

    An algorithm for bone remodeling is presented which allows for both a redistribution of density and a continuous change of principal material directions for the orthotropic material properties of bone. It employs a modal analysis to add density for growth and a local effective strain based analysis to redistribute density. General re-distribution functions are presented. The model utilizes theories of cellular solids to relate density and strength. The code predicts the same general density distributions and local orthotropy as observed in reality.

  20. Correlating two-photon excited fluorescence imaging of breast cancer cellular redox state with seahorse flux analysis of normalized cellular oxygen consumption

    Science.gov (United States)

    Hou, Jue; Wright, Heather J.; Chan, Nicole; Tran, Richard; Razorenova, Olga V.; Potma, Eric O.; Tromberg, Bruce J.

    2016-06-01

    Two-photon excited fluorescence (TPEF) imaging of the cellular cofactors nicotinamide adenine dinucleotide and oxidized flavin adenine dinucleotide is widely used to measure cellular metabolism, both in normal and pathological cells and tissues. When dual-wavelength excitation is used, ratiometric TPEF imaging of the intrinsic cofactor fluorescence provides a metabolic index of cells-the "optical redox ratio" (ORR). With increased interest in understanding and controlling cellular metabolism in cancer, there is a need to evaluate the performance of ORR in malignant cells. We compare TPEF metabolic imaging with seahorse flux analysis of cellular oxygen consumption in two different breast cancer cell lines (MCF-7 and MDA-MB-231). We monitor metabolic index in living cells under both normal culture conditions and, for MCF-7, in response to cell respiration inhibitors and uncouplers. We observe a significant correlation between the TPEF-derived ORR and the flux analyzer measurements (R=0.7901, p<0.001). Our results confirm that the ORR is a valid dynamic index of cell metabolism under a range of oxygen consumption conditions relevant for cancer imaging.

  1. A Geometrical-Based Model for Cochannel Interference Analysis and Capacity Estimation of CDMA Cellular Systems

    Directory of Open Access Journals (Sweden)

    Konstantinos B. Baltzis

    2008-10-01

    Full Text Available A common assumption in cellular communications is the circular-cell approximation. In this paper, an alternative analysis based on the hexagonal shape of the cells is presented. A geometrical-based stochastic model is proposed to describe the angle of arrival of the interfering signals in the reverse link of a cellular system. Explicit closed form expressions are derived, and simulations performed exhibit the characteristics and validate the accuracy of the proposed model. Applications in the capacity estimation of WCDMA cellular networks are presented. Dependence of system capacity of the sectorization of the cells and the base station antenna radiation pattern is explored. Comparisons with data in literature validate the accuracy of the proposed model. The degree of error of the hexagonal and the circular-cell approaches has been investigated indicating the validity of the proposed model. Results have also shown that, in many cases, the two approaches give similar results when the radius of the circle equals to the hexagon inradius. A brief discussion on how the proposed technique may be applied to broadband access networks is finally made.

  2. Human papilloma viruses and cervical tumours: mapping of integration sites and analysis of adjacent cellular sequences

    International Nuclear Information System (INIS)

    Klimov, Eugene; Vinokourova, Svetlana; Moisjak, Elena; Rakhmanaliev, Elian; Kobseva, Vera; Laimins, Laimonis; Kisseljov, Fjodor; Sulimova, Galina

    2002-01-01

    In cervical tumours the integration of human papilloma viruses (HPV) transcripts often results in the generation of transcripts that consist of hybrids of viral and cellular sequences. Mapping data using a variety of techniques has demonstrated that HPV integration occurred without obvious specificity into human genome. However, these techniques could not demonstrate whether integration resulted in the generation of transcripts encoding viral or viral-cellular sequences. The aim of this work was to map the integration sites of HPV DNA and to analyse the adjacent cellular sequences. Amplification of the INTs was done by the APOT technique. The APOT products were sequenced according to standard protocols. The analysis of the sequences was performed using BLASTN program and public databases. To localise the INTs PCR-based screening of GeneBridge4-RH-panel was used. Twelve cellular sequences adjacent to integrated HPV16 (INT markers) expressed in squamous cell cervical carcinomas were isolated. For 11 INT markers homologous human genomic sequences were readily identified and 9 of these showed significant homologies to known genes/ESTs. Using the known locations of homologous cDNAs and the RH-mapping techniques, mapping studies showed that the INTs are distributed among different human chromosomes for each tumour sample and are located in regions with the high levels of expression. Integration of HPV genomes occurs into the different human chromosomes but into regions that contain highly transcribed genes. One interpretation of these studies is that integration of HPV occurs into decondensed regions, which are more accessible for integration of foreign DNA

  3. STEM mode in the SEM for the analysis of cellular sections prepared by ultramicrotome sectioning

    International Nuclear Information System (INIS)

    Hondow, N; Harrington, J; Brydson, R; Brown, A

    2012-01-01

    The use of the dual imaging capabilities of a scanning electron microscope fitted with a transmitted electron detector is highlighted in the analysis of samples with importance in the field of nanotoxicology. Cellular uptake of nanomaterials is often examined by transmission electron microscopy of thin sections prepared by ultramicrotome sectioning. Examination by SEM allows for the detection of artefacts caused by sample preparation (eg. nanomaterial pull-out) and the complementary STEM mode permits study of the interaction between nanomaterials and cells. Thin sections of two nanomaterials of importance in nanotoxicology (cadmium selenide quantum dots and single walled carbon nanotubes) are examined using STEM mode in the SEM.

  4. Use of radioactive double labelling technique in the chemical analysis of the mediators of cellular immunity

    International Nuclear Information System (INIS)

    Sorg, C.

    1978-01-01

    Radioactive double labelling was adapted for the analysis of mediators of cellular immunity. Two identical lymphocyte cultures were simultaneously labelled with [ 3 H]- or [ 14 C] leucine. Each of the cultures was stimulated with antigen or mitogen. The combined supernatants were then subjected to various fractionation procedures. By determining the isotope ratio in each fraction it is possible to identify those products of activated lymphocytes that have been produced either de novo or in increased amounts. The method proved sensitive enough to detect lymphocyte activation products in supernatants of activated lymphocyte cultures from guinea pig, mouse, and man

  5. Urine storage under refrigeration preserves the sample in chemical, cellularity and bacteriuria analysis of ACS

    Directory of Open Access Journals (Sweden)

    Karen Cristina Barcellos Ribeiro

    2013-12-01

    Full Text Available INTRODUCTION: The analysis of urine abnormal constituents and sediment (ACS comprises tests of great diagnostic and prognostic value in clinical practice. When the analysis of ACS cannot be performed within two hours after collection, the sample must be preserved in order to avoid pre-analytical interferences. Refrigeration is the most applied technique due to its cost effectiveness. Moreover, it presents fewer inconveniences when compared to chemical preservation. However, changes in ACS may also occur in samples under refrigeration. OBJECTIVE: To analyze the influence of refrigeration at 2 to 8ºC on the storage of urine samples within 24 hours. MATERIAL AND METHOD: A total of 80 urine samples were selected from patients admitted at Universidade Federal de Juiz de Fora (UFJF university hospital, which were tested for ACS at room temperature and stored under refrigeration for 6, 12 and 24 hours. RESULTS: The results showed that refrigeration proved to be effective when compared to samples kept at room temperature, inasmuch as the physical, chemical, microbial and cellularity features were preserved. Nevertheless, crystalluria was present after a 6- hour storage period. CONCLUSION: The tests revealed that cooling preserved cellularity and chemical characteristics of urine samples for up to 12 hours. Nonetheless, the precipitation of crystals was evident in this storage method. Thus, the possible consequences of storing urine samples for ACS test under these conditions should be included in the analysis report.

  6. Mapping cellular hierarchy by single-cell analysis of the cell surface repertoire.

    Science.gov (United States)

    Guo, Guoji; Luc, Sidinh; Marco, Eugenio; Lin, Ta-Wei; Peng, Cong; Kerenyi, Marc A; Beyaz, Semir; Kim, Woojin; Xu, Jian; Das, Partha Pratim; Neff, Tobias; Zou, Keyong; Yuan, Guo-Cheng; Orkin, Stuart H

    2013-10-03

    Stem cell differentiation pathways are most often studied at the population level, whereas critical decisions are executed at the level of single cells. We have established a highly multiplexed, quantitative PCR assay to profile in an unbiased manner a panel of all commonly used cell surface markers (280 genes) from individual cells. With this method, we analyzed over 1,500 single cells throughout the mouse hematopoietic system and illustrate its utility for revealing important biological insights. The comprehensive single cell data set permits mapping of the mouse hematopoietic stem cell differentiation hierarchy by computational lineage progression analysis. Further profiling of 180 intracellular regulators enabled construction of a genetic network to assign the earliest differentiation event during hematopoietic lineage specification. Analysis of acute myeloid leukemia elicited by MLL-AF9 uncovered a distinct cellular hierarchy containing two independent self-renewing lineages with different clonal activities. The strategy has broad applicability in other cellular systems. Copyright © 2013 Elsevier Inc. All rights reserved.

  7. Meta-Analysis of High-Throughput Datasets Reveals Cellular Responses Following Hemorrhagic Fever Virus Infection

    Directory of Open Access Journals (Sweden)

    Gavin C. Bowick

    2011-05-01

    Full Text Available The continuing use of high-throughput assays to investigate cellular responses to infection is providing a large repository of information. Due to the large number of differentially expressed transcripts, often running into the thousands, the majority of these data have not been thoroughly investigated. Advances in techniques for the downstream analysis of high-throughput datasets are providing additional methods for the generation of additional hypotheses for further investigation. The large number of experimental observations, combined with databases that correlate particular genes and proteins with canonical pathways, functions and diseases, allows for the bioinformatic exploration of functional networks that may be implicated in replication or pathogenesis. Herein, we provide an example of how analysis of published high-throughput datasets of cellular responses to hemorrhagic fever virus infection can generate additional functional data. We describe enrichment of genes involved in metabolism, post-translational modification and cardiac damage; potential roles for specific transcription factors and a conserved involvement of a pathway based around cyclooxygenase-2. We believe that these types of analyses can provide virologists with additional hypotheses for continued investigation.

  8. Error performance analysis in K-tier uplink cellular networks using a stochastic geometric approach

    KAUST Repository

    Afify, Laila H.

    2015-09-14

    In this work, we develop an analytical paradigm to analyze the average symbol error probability (ASEP) performance of uplink traffic in a multi-tier cellular network. The analysis is based on the recently developed Equivalent-in-Distribution approach that utilizes stochastic geometric tools to account for the network geometry in the performance characterization. Different from the other stochastic geometry models adopted in the literature, the developed analysis accounts for important communication system parameters and goes beyond signal-to-interference-plus-noise ratio characterization. That is, the presented model accounts for the modulation scheme, constellation type, and signal recovery techniques to model the ASEP. To this end, we derive single integral expressions for the ASEP for different modulation schemes due to aggregate network interference. Finally, all theoretical findings of the paper are verified via Monte Carlo simulations.

  9. Advanced spatial metrics analysis in cellular automata land use and cover change modeling

    International Nuclear Information System (INIS)

    Zamyatin, Alexander; Cabral, Pedro

    2011-01-01

    This paper proposes an approach for a more effective definition of cellular automata transition rules for landscape change modeling using an advanced spatial metrics analysis. This approach considers a four-stage methodology based on: (i) the search for the appropriate spatial metrics with minimal correlations; (ii) the selection of the appropriate neighborhood size; (iii) the selection of the appropriate technique for spatial metrics application; and (iv) the analysis of the contribution level of each spatial metric for joint use. The case study uses an initial set of 7 spatial metrics of which 4 are selected for modeling. Results show a better model performance when compared to modeling without any spatial metrics or with the initial set of 7 metrics.

  10. Application of artificial intelligence (AI) methods for designing and analysis of reconfigurable cellular manufacturing system (RCMS)

    CSIR Research Space (South Africa)

    Xing, B

    2009-12-01

    Full Text Available This work focuses on the design and control of a novel hybrid manufacturing system: Reconfigurable Cellular Manufacturing System (RCMS) by using Artificial Intelligence (AI) approach. It is hybrid as it combines the advantages of Cellular...

  11. Exciton broadening in WS2 /graphene heterostructures

    International Nuclear Information System (INIS)

    Hill, Heather M.; Rigosi, Albert F.; Raja, Archana

    2017-01-01

    Here, we have used optical spectroscopy to observe spectral broadening of WS 2 exciton reflectance peaks in heterostructures of monolayer WS 2 capped with mono- to few-layer graphene. The broadening is found to be similar for the A and B excitons and on the order of 5–10 meV. No strong dependence on the number of graphene layers was observed within experimental uncertainty. The broadening can be attributed to charge- and energy-transfer processes between the two materials, providing an observed lower bound for the corresponding time scales of 65 fs.

  12. Dynamic PET scanning and compartmental model analysis to determine cellular level radiotracer distribution in vivo

    International Nuclear Information System (INIS)

    Smith, G.T.; Hubner, K.F.; Goodman, M.M.; Stubbs, J.B.

    1992-01-01

    Positron emission tomography (PET) has been used to measure tissue radiotracer concentration in vivo. Radiochemical distribution can be determined with compartmental model analysis. A two compartment model describes the kinetics of N-13 ammonia ( 13 NH 3 ) in the myocardium. The model consists of a vascular space, Q 1 and a space for 13 NH 3 bound within the tissue, Q 2 . Differential equations for the model can be written: X(t) = AX(t) + BU( t), Y(t)= CX(t)+ DU(t) (1) where X(t) is a column vector [Q 1 (t); Q 2 (t)], U(t) is the arterial input activity measured from the left ventricular blood pool, and Y(t) is the measured tissue activity using PET. Matrices A, B, C, and D are dependent on physiological parameters describing the kinetics of 13 NH 3 in the myocardium. Estimated parameter matrices in Equation 1 have been validated in dog experiments by measuring myocardial perfusion with dynamic PET scanning and intravenous injection of 13 NH 3 . Tracer concentrations for each compartment can be calculated by direct integration of Equation 1. If the cellular level distribution of each compartment is known, the concentration of tracer within the intracellular and extracellular space can be determined. Applications of this type of modeling include parameter estimation for measurement of physiological processes, organ level dosimetry, and determination of cellular radiotracer distribution

  13. Quantitative image analysis of cellular heterogeneity in breast tumors complements genomic profiling.

    Science.gov (United States)

    Yuan, Yinyin; Failmezger, Henrik; Rueda, Oscar M; Ali, H Raza; Gräf, Stefan; Chin, Suet-Feung; Schwarz, Roland F; Curtis, Christina; Dunning, Mark J; Bardwell, Helen; Johnson, Nicola; Doyle, Sarah; Turashvili, Gulisa; Provenzano, Elena; Aparicio, Sam; Caldas, Carlos; Markowetz, Florian

    2012-10-24

    Solid tumors are heterogeneous tissues composed of a mixture of cancer and normal cells, which complicates the interpretation of their molecular profiles. Furthermore, tissue architecture is generally not reflected in molecular assays, rendering this rich information underused. To address these challenges, we developed a computational approach based on standard hematoxylin and eosin-stained tissue sections and demonstrated its power in a discovery and validation cohort of 323 and 241 breast tumors, respectively. To deconvolute cellular heterogeneity and detect subtle genomic aberrations, we introduced an algorithm based on tumor cellularity to increase the comparability of copy number profiles between samples. We next devised a predictor for survival in estrogen receptor-negative breast cancer that integrated both image-based and gene expression analyses and significantly outperformed classifiers that use single data types, such as microarray expression signatures. Image processing also allowed us to describe and validate an independent prognostic factor based on quantitative analysis of spatial patterns between stromal cells, which are not detectable by molecular assays. Our quantitative, image-based method could benefit any large-scale cancer study by refining and complementing molecular assays of tumor samples.

  14. Efficient Analysis of Systems Biology Markup Language Models of Cellular Populations Using Arrays.

    Science.gov (United States)

    Watanabe, Leandro; Myers, Chris J

    2016-08-19

    The Systems Biology Markup Language (SBML) has been widely used for modeling biological systems. Although SBML has been successful in representing a wide variety of biochemical models, the core standard lacks the structure for representing large complex regular systems in a standard way, such as whole-cell and cellular population models. These models require a large number of variables to represent certain aspects of these types of models, such as the chromosome in the whole-cell model and the many identical cell models in a cellular population. While SBML core is not designed to handle these types of models efficiently, the proposed SBML arrays package can represent such regular structures more easily. However, in order to take full advantage of the package, analysis needs to be aware of the arrays structure. When expanding the array constructs within a model, some of the advantages of using arrays are lost. This paper describes a more efficient way to simulate arrayed models. To illustrate the proposed method, this paper uses a population of repressilator and genetic toggle switch circuits as examples. Results show that there are memory benefits using this approach with a modest cost in runtime.

  15. Cellular therapy injections in today's orthopedic market: A social media analysis.

    Science.gov (United States)

    Ramkumar, Prem N; Navarro, Sergio M; Haeberle, Heather S; Chughtai, Morad; Demetriades, Christopher; Piuzzi, Nicolas S; Mont, Michael A; Bauer, Thomas W; Muschler, George F

    2017-12-01

    The current state of cellular therapy for musculoskeletal conditions is at a crossroads. Marketing efforts are often outpacing clinical evidence and regulatory control. This study was an effort to describe the marketing of cellular therapy in musculoskeletal medicine by evaluating the content in popular social media channels. Specifically, media posts were evaluated for the following: (1) perspective, (2) tone, (3) content and (4) visibility. Social media content related to cell therapy for musculoskeletal conditions was assessed in a search using 28 hashtags on the public domains of Instagram and Twitter over a 2-year period (2014-2016) that resulted in analysis of 698 posts. Supplemental analyses of LinkedIn and Facebook domains were also conducted. A categorical scoring system was used to analyze perspective (patient, family or friend, business or organization), tone (positive, negative), content (education, advertisement, research, media coverage or patient experience) and visibility (number of hashtags per post). Sub-analyses of the advertisement content from various perspectives (patients, physicians and businesses) were performed. The media perspective was most frequently from a business or organization (83%; n = 575). A total of 94% of the posts had a positive tone and only 6% had a negative tone, and the only negative posts came from patients (60% positive and 40% negative). The most common content of social media posts were advertisements, representing 68% (n = 477) of all posts; this was confirmed in the Facebook analysis. The mean number of hashtags was five per post. Sub-analyses revealed approximately half of the advertising posts originated from a single business that recruited physicians to market their cell-based therapies on social media, which was confirmed in the LinkedIn analysis. The market messages related to cell-based therapies for musculoskeletal conditions available on social media are dominated by businesses that seem to use a

  16. Cross-Layer Design and Analysis of Downlink Communications in Cellular CDMA Systems

    Directory of Open Access Journals (Sweden)

    Sun Jin Yuan

    2006-01-01

    Full Text Available A cellular CDMA network with voice and data communications is considered. Focusing on the downlink direction, we seek for the overall performance improvement which can be achieved by cross-layer analysis and design, taking physical layer, link layer, network layer, and transport layer into account. We are concerned with the role of each single layer as well as the interaction among layers, and propose algorithms/schemes accordingly to improve the system performance. These proposals include adaptive scheduling for link layer, priority-based handoff strategy for network admission control, and an algorithm for the avoidance of TCP spurious timeouts at the transport layer. Numerical results show the performance gain of each proposed scheme over independent performance of an individual layer in the wireless mobile network. We conclude that the system performance in terms of capacity, throughput, dropping probability, outage, power efficiency, delay, and fairness can be enhanced by jointly considering the interactions across layers.

  17. Signal Quality Outage Analysis for Ultra-Reliable Communications in Cellular Networks

    DEFF Research Database (Denmark)

    Gerardino, Guillermo Andrés Pocovi; Alvarez, Beatriz Soret; Lauridsen, Mads

    2015-01-01

    Ultra-reliable communications over wireless will open the possibility for a wide range of novel use cases and applications. In cellular networks, achieving reliable communication is challenging due to many factors, particularly the fading of the desired signal and the interference. In this regard......, we investigate the potential of several techniques to combat these main threats. The analysis shows that traditional microscopic multiple-input multiple-output schemes with 2x2 or 4x4 antenna configurations are not enough to fulfil stringent reliability requirements. It is revealed how such antenna...... schemes must be complemented with macroscopic diversity as well as interference management techniques in order to ensure the necessary SINR outage performance. Based on the obtained performance results, it is discussed which of the feasible options fulfilling the ultra-reliable criteria are most promising...

  18. Endorsing cellular competitiveness in aberrant epithelium of oral submucous fibrosis progression: neighbourhood analysis of immunohistochemical attributes.

    Science.gov (United States)

    Anura, Anji; Kazi, Anees; Pal, Mousumi; Paul, Ranjan Rashmi; Sengupta, Sanghamitra; Chatterjee, Jyotirmoy

    2018-04-23

    Epithelial abnormality during the transformation of oral submucous fibrosis (OSF) into oral squamous cell carcinoma has been well studied and documented. However, the differential contribution of atrophy and hyperplasia for malignant potentiality of OSF is yet to be resolved. Existing diagnostic conjectures lack precise diagnostic attributes which may be effectively resolved by substantiation of specific molecular pathology signatures. Present study elucidates existence of cellular competitiveness in OSF conditions using computer-assisted neighbourhood analysis in quantitative immunohistochemistry (IHC) framework. The concept of field cancerization was contributory in finding correspondence among neighbouring cells of epithelial layers with reference to differential expression of cardinal cancer-related genes [c-Myc (oncogene), p53 (tumour suppressor), and HIF-1α (hypoxia regulator)] which are known to be important sensors in recognizing cellular competitive interface. Our analyses indicate that different states of OSF condition may be associated with different forms of competitiveness within epithelial neighbouring cells which might be responsible to shape the present and future of the pre-malignant condition. Analytical findings indicated association of atrophic epithelium with stress-driven competitive environment having low c-Myc, high-p53, and stable HIF-1α (the looser cells) which undergo apoptosis. Whereas, the cells with high c-Myc + (winner cells) give rise to hyperplastic epithelium via possible mutation in p53. The epithelial dysplasia plausibly occurs due to clonal expansion of c-Myc and p53 positive supercompetitor cells. Present study proposes quantitative IHC along with neighbourhood analysis which might help us to dig deeper on to the interaction among epithelial cell population to provide a better understanding of field cancerization and malignant transformation of pre-malignancy.

  19. CytoSpectre: a tool for spectral analysis of oriented structures on cellular and subcellular levels.

    Science.gov (United States)

    Kartasalo, Kimmo; Pölönen, Risto-Pekka; Ojala, Marisa; Rasku, Jyrki; Lekkala, Jukka; Aalto-Setälä, Katriina; Kallio, Pasi

    2015-10-26

    Orientation and the degree of isotropy are important in many biological systems such as the sarcomeres of cardiomyocytes and other fibrillar structures of the cytoskeleton. Image based analysis of such structures is often limited to qualitative evaluation by human experts, hampering the throughput, repeatability and reliability of the analyses. Software tools are not readily available for this purpose and the existing methods typically rely at least partly on manual operation. We developed CytoSpectre, an automated tool based on spectral analysis, allowing the quantification of orientation and also size distributions of structures in microscopy images. CytoSpectre utilizes the Fourier transform to estimate the power spectrum of an image and based on the spectrum, computes parameter values describing, among others, the mean orientation, isotropy and size of target structures. The analysis can be further tuned to focus on targets of particular size at cellular or subcellular scales. The software can be operated via a graphical user interface without any programming expertise. We analyzed the performance of CytoSpectre by extensive simulations using artificial images, by benchmarking against FibrilTool and by comparisons with manual measurements performed for real images by a panel of human experts. The software was found to be tolerant against noise and blurring and superior to FibrilTool when analyzing realistic targets with degraded image quality. The analysis of real images indicated general good agreement between computational and manual results while also revealing notable expert-to-expert variation. Moreover, the experiment showed that CytoSpectre can handle images obtained of different cell types using different microscopy techniques. Finally, we studied the effect of mechanical stretching on cardiomyocytes to demonstrate the software in an actual experiment and observed changes in cellular orientation in response to stretching. CytoSpectre, a versatile, easy

  20. Extended analysis of the high resolution FTIR spectrum of 32S16O2 in the region of the ν2 band: Line positions, strengths, and pressure broadening widths

    Science.gov (United States)

    Ulenikov, O. N.; Bekhtereva, E. S.; Gromova, O. V.; Quack, M.; Mellau, G. Ch.; Sydow, C.; Bauerecker, S.

    2018-05-01

    The high resolution infrared spectra of sulfur dioxide (32S16O2) were recorded with a Bruker IFS 125HR Fourier transform infrared spectrometer (Zürich prototype ZP2001) in combination with a Ge:Cu detector and analyzed in the ν2 fundamental band region (400-650 cm-1 , ν0 ˜ = 517.8725691(77) cm-1). More than 4200 transitions were assigned in the experimental spectra to the ν2 band (the maximum values of the quantum numbers are Jmax. = 96 and Kamax. = 25). The subsequent weighted fit of experimentally assigned transitions was made with the Watson Hamiltonian. The 148 highly accurate MW transitions known from the literature have been also taken into account in the fit, resulting in a set of 33 parameters which reproduces the initial 1295 infrared ro-vibrational energy values from more than 4200 experimental line positions with a root mean square deviation drms = 1.5 ×10-4 cm-1. An analysis of 992 experimental ro-vibrational line intensities of the ν2 band was made, and a set of four effective dipole moment parameters was obtained which reproduces the initial experimental line intensities with a relative drms = 5.7 % . The half-widths of 146 ro-vibrational lines (Jmax. = 53 and Kamax. = 20) were analyzed from the multi-spectrum fit, and self-pressure broadening coefficients were determined.

  1. Comprehensive analysis of temporal alterations in cellular proteome of Bacillus subtilis under curcumin treatment.

    Directory of Open Access Journals (Sweden)

    Panga Jaipal Reddy

    Full Text Available Curcumin is a natural dietary compound with antimicrobial activity against various gram positive and negative bacteria. This study aims to investigate the proteome level alterations in Bacillus subtilis due to curcumin treatment and identification of its molecular/cellular targets to understand the mechanism of action. We have performed a comprehensive proteomic analysis of B. subtilis AH75 strain at different time intervals of curcumin treatment (20, 60 and 120 min after the drug exposure, three replicates to compare the protein expression profiles using two complementary quantitative proteomic techniques, 2D-DIGE and iTRAQ. To the best of our knowledge, this is the first comprehensive longitudinal investigation describing the effect of curcumin treatment on B. subtilis proteome. The proteomics analysis revealed several interesting targets such UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1, putative septation protein SpoVG and ATP-dependent Clp protease proteolytic subunit. Further, in silico pathway analysis using DAVID and KOBAS has revealed modulation of pathways related to the fatty acid metabolism and cell wall synthesis, which are crucial for cell viability. Our findings revealed that curcumin treatment lead to inhibition of the cell wall and fatty acid synthesis in addition to differential expression of many crucial proteins involved in modulation of bacterial metabolism. Findings obtained from proteomics analysis were further validated using 5-cyano-2,3-ditolyl tetrazolium chloride (CTC assay for respiratory activity, resazurin assay for metabolic activity and membrane integrity assay by potassium and inorganic phosphate leakage measurement. The gene expression analysis of selected cell wall biosynthesis enzymes has strengthened the proteomics findings and indicated the major effect of curcumin on cell division.

  2. Biomolecular Analysis Capability for Cellular and Omics Research on the International Space Station

    Science.gov (United States)

    Guinart-Ramirez, Y.; Cooley, V. M.; Love, J. E.

    2016-01-01

    International Space Station (ISS) assembly complete ushered a new era focused on utilization of this state-of-the-art orbiting laboratory to advance science and technology research in a wide array of disciplines, with benefits to Earth and space exploration. ISS enabling capability for research in cellular and molecular biology includes equipment for in situ, on-orbit analysis of biomolecules. Applications of this growing capability range from biomedicine and biotechnology to the emerging field of Omics. For example, Biomolecule Sequencer is a space-based miniature DNA sequencer that provides nucleotide sequence data for entire samples, which may be used for purposes such as microorganism identification and astrobiology. It complements the use of WetLab-2 SmartCycler"TradeMark", which extracts RNA and provides real-time quantitative gene expression data analysis from biospecimens sampled or cultured onboard the ISS, for downlink to ground investigators, with applications ranging from clinical tissue evaluation to multigenerational assessment of organismal alterations. And the Genes in Space-1 investigation, aimed at examining epigenetic changes, employs polymerase chain reaction to detect immune system alterations. In addition, an increasing assortment of tools to visualize the subcellular distribution of tagged macromolecules is becoming available onboard the ISS. For instance, the NASA LMM (Light Microscopy Module) is a flexible light microscopy imaging facility that enables imaging of physical and biological microscopic phenomena in microgravity. Another light microscopy system modified for use in space to image life sciences payloads is initially used by the Heart Cells investigation ("Effects of Microgravity on Stem Cell-Derived Cardiomyocytes for Human Cardiovascular Disease Modeling and Drug Discovery"). Also, the JAXA Microscope system can perform remotely controllable light, phase-contrast, and fluorescent observations. And upcoming confocal microscopy

  3. An In-situ method for the study of strain broadening usingsynchrotronx-ray diffraction

    Energy Technology Data Exchange (ETDEWEB)

    Tang, Chiu C.; Lynch, Peter A.; Cheary, Robert W.; Clark, Simon M.

    2006-12-15

    A tensonometer for stretching metal foils has beenconstructed for the study of strain broadening in x-ray diffraction lineprofiles. This device, which is designed for use on the powderdiffractometer in Station 2.3 at Daresbury Laboratory, allows in-situmeasurements to be performed on samples under stress. It can be used fordata collection in either transmission or reflection modes using eithersymmetric or asymmetric diffraction geometries. As a test case,measurements were carried out on a 18mum thick copper foil experiencingstrain levels of up to 5 percent using both symmetric reflection andsymmetric transmission diffraction. All the diffraction profilesdisplayed peak broadening and asymmetry which increased with strain. Themeasured profiles were analysed by the fundamental parameters approachusing the TOPAS peak fitting software. All the observed broadenedprofiles were modelled by convoluting a refineable diffraction profile,representing the dislocation and crystallite size broadening, with afixed instrumental profile pre-determined usinghigh quality LaB6reference powder. The de-convolution process yielded "pure" sampleintegral breadths and asymmetry results which displayed a strongdependence on applied strain and increased almost linearly with appliedstrain. Assuming crystallite size broadening in combination withdislocation broadening arising from fcc a/2<110>111 dislocations,we have extracted the variation of mechanic al property with strain. Theobservation of both peak asymmetry and broadening has been interpreted asa manifestation of a cellular structure with cell walls and cellinteriors possessing high and low dislocation densities.

  4. Anomalous broadening of the N2+ first negative band system

    International Nuclear Information System (INIS)

    Robben, F.; Cattolica, R.; Coe, D.; Talbot, L.

    1976-01-01

    Analysis of the fluorescence excited by a high energy electron beam has become a standard technique for measurement of density, rotational temperature of nitrogen, and translational temperature of helium and argon in rarefied gas dynamics. To obtain translational temperature the Doppler broadening of the fluorescence is determined by measuring the spectral line shape with a Fabry-Perot interferometer. To apply this technique to nitrogen a single rotational line must be selected from the band spectrum for analysis by the Fabry-Perot interferometer. As supported by extensive additional measurements, there is an anomalous broadening of the rotational lines of the N 2 + first negative band system with a width equivalent to about a 70 0 K translational temperature of nitrogen. It appears that the line width of approximately 0.03 cm -1 is an inherent property of this nitrogen band when excited by electron impact directly from the ground state

  5. Lognormal Distribution of Cellular Uptake of Radioactivity: Statistical Analysis of α-Particle Track Autoradiography

    Science.gov (United States)

    Neti, Prasad V.S.V.; Howell, Roger W.

    2010-01-01

    Recently, the distribution of radioactivity among a population of cells labeled with 210Po was shown to be well described by a log-normal (LN) distribution function (J Nucl Med. 2006;47:1049–1058) with the aid of autoradiography. To ascertain the influence of Poisson statistics on the interpretation of the autoradiographic data, the present work reports on a detailed statistical analysis of these earlier data. Methods The measured distributions of α-particle tracks per cell were subjected to statistical tests with Poisson, LN, and Poisson-lognormal (P-LN) models. Results The LN distribution function best describes the distribution of radioactivity among cell populations exposed to 0.52 and 3.8 kBq/mL of 210Po-citrate. When cells were exposed to 67 kBq/mL, the P-LN distribution function gave a better fit; however, the underlying activity distribution remained log-normal. Conclusion The present analysis generally provides further support for the use of LN distributions to describe the cellular uptake of radioactivity. Care should be exercised when analyzing autoradiographic data on activity distributions to ensure that Poisson processes do not distort the underlying LN distribution. PMID:18483086

  6. Macroscopic Spatial Complexity of the Game of Life Cellular Automaton: A Simple Data Analysis

    Science.gov (United States)

    Hernández-Montoya, A. R.; Coronel-Brizio, H. F.; Rodríguez-Achach, M. E.

    In this chapter we present a simple data analysis of an ensemble of 20 time series, generated by averaging the spatial positions of the living cells for each state of the Game of Life Cellular Automaton (GoL). We show that at the macroscopic level described by these time series, complexity properties of GoL are also presented and the following emergent properties, typical of data extracted complex systems such as financial or economical come out: variations of the generated time series following an asymptotic power law distribution, large fluctuations tending to be followed by large fluctuations, and small fluctuations tending to be followed by small ones, and fast decay of linear correlations, however, the correlations associated to their absolute variations exhibit a long range memory. Finally, a Detrended Fluctuation Analysis (DFA) of the generated time series, indicates that the GoL spatial macro states described by the time series are not either completely ordered or random, in a measurable and very interesting way.

  7. A study on the microstructural parameters of Zn {sub (1-x)}La{sub x}Zr{sub x}O nanopowders by X-ray line broadening analysis

    Energy Technology Data Exchange (ETDEWEB)

    Chenari, Hossein Mahmoudi; Moafi, Hadi Fallah; Rezaee, Omid, E-mail: mahmoudi_hossein@guilan.ac.ir, E-mail: hmahmodiph@yahoo.com [Faculty of Science, University of Guilan, Rasht (Iran, Islamic Republic of)

    2016-05-15

    In the present study, the pure and La-Zr co-doped ZnO nanoparticles were prepared by sol-gel technique using zinc acetate dehydrate (Zn(Ac){sub 2} ·{sub 2}H{sub 2} O), lanthanum nitrate hexahydrate (La(NO{sub 3}){sub 3} ·6H{sub 2}O) and zirconium chloride (ZrCl{sub 4} ) as precursor. The structure and morphology of the prepared nanoparticle samples were studied using X-ray diffraction and transmission electron microscopy measurements. X-ray diffraction results indicated that all the samples have crystalline wurtzite phase. TEM showed that powder was polycrystalline in nature with random distribution of the pure and La-Zr doped ZnO nanoparticles. We demonstrate strain-size evaluations for pure and doped ZnO nanoparticles from the x-ray line profile analysis. The microstructural effects of crystalline materials in terms of crystallite sizes and lattice strain on the peak broadening were investigated using Williamson-Hall (W-H) analysis and size- strain plot (SSP) method. The average crystallite size of Zn {sub (1-x)}La{sub x} Zr{sub x} O nanoparticles estimated from the W-H analysis and SSP method varied as the doping concentration increased. The incorporation of Zr{sup 4+} ion in the place of Zn{sup {sub 2}{sub +}} caused an increase in the size of nanocrystals as compared to undoped ZnO. The average particle sizes of co-doped ZnO nanoparticles estimated from the USDM model is in good agreement with the TEM results. (author)

  8. An Overview and Analysis of Mobile Internet Protocols in Cellular Environments.

    Science.gov (United States)

    Chao, Han-Chieh

    2001-01-01

    Notes that cellular is the inevitable future architecture for the personal communication service system. Discusses the current cellular support based on Mobile Internet Protocol version 6 (Ipv6) and points out the shortfalls of using Mobile IP. Highlights protocols especially for mobile management schemes which can optimize a high-speed mobile…

  9. Stochastic Geometric Coverage Analysis in mmWave Cellular Networks with a Realistic Channel Model

    DEFF Research Database (Denmark)

    Rebato, Mattia; Park, Jihong; Popovski, Petar

    2017-01-01

    Millimeter-wave (mmWave) bands have been attracting growing attention as a possible candidate for next-generation cellular networks, since the available spectrum is orders of magnitude larger than in current cellular allocations. To precisely design mmWave systems, it is important to examine mmWa...

  10. Broadening the analysis of innovation systems

    DEFF Research Database (Denmark)

    Lundvall, Bengt-Åke; Christensen, Jesper Lindgaard

    2003-01-01

    Traditionally, innovation systems have been analysed as rooted either in the R&D system or in the production system. This chapter suggests a broader approach, seeing them as rooted in the national production and human resource development systems. The argument is linked to the literature...... for the job losses imposed by increased competition. It is shown that increased competition does not seem to affect the relative position of workers without vocational training at the level of the firm. But it is also shown that massive job losses for workers without vocational training tend to take place...

  11. Cellular automaton modeling of biological pattern formation characterization, examples, and analysis

    CERN Document Server

    Deutsch, Andreas

    2017-01-01

    This text explores the use of cellular automata in modeling pattern formation in biological systems. It describes several mathematical modeling approaches utilizing cellular automata that can be used to study the dynamics of interacting cell systems both in simulation and in practice. New in this edition are chapters covering cell migration, tissue development, and cancer dynamics, as well as updated references and new research topic suggestions that reflect the rapid development of the field. The book begins with an introduction to pattern-forming principles in biology and the various mathematical modeling techniques that can be used to analyze them. Cellular automaton models are then discussed in detail for different types of cellular processes and interactions, including random movement, cell migration, adhesive cell interaction, alignment and cellular swarming, growth processes, pigment cell pattern formation, tissue development, tumor growth and invasion, and Turing-type patterns and excitable media. In ...

  12. Absorption of Ultrashort Electromagnetic Pulses on Broadened Dipole Transitions

    International Nuclear Information System (INIS)

    Svita, S Yu; Astapenko, V A

    2014-01-01

    The study is devoted to the theoretical analysis of ultrashort electromagnetic pulses (USP) absorption on broadened dipole transitions. Calculations are made in the frame of perturbation theory with the use of the basic formula for energy absorbed during all time of the action of USP on dipole transition. Dependences of absorbed energy upon pulse duration and carrier frequency are obtained and analyzed for different types of spectral line shape and USP parameters

  13. Driver hand-held cellular phone use: a four-year analysis.

    Science.gov (United States)

    Eby, David W; Vivoda, Jonathon M; St Louis, Renée M

    2006-01-01

    The use of hand-held cellular (mobile) phones while driving has stirred more debate, passion, and research than perhaps any other traffic safety issue in the past several years. There is ample research showing that the use of either hand-held or hands-free cellular phones can lead to unsafe driving patterns. Whether or not these performance deficits increase the risk of crash is difficult to establish, but recent studies are beginning to suggest that cellular phone use elevates crash risk. The purpose of this study was to assess changes in the rate of hand-held cellular phone use by motor-vehicle drivers on a statewide level in Michigan. This study presents the results of 13 statewide surveys of cellular phone use over a 4-year period. Hand-held cellular phone use data were collected through direct observation while vehicles were stopped at intersections and freeway exit ramps. Data were weighted to be representative of all drivers traveling during daylight hours in Michigan. The study found that driver hand-held cellular phone use has more than doubled between 2001 and 2005, from 2.7% to 5.8%. This change represents an average increase of 0.78 percentage points per year. The 5.8% use rate observed in 2005 means that at any given daylight hour, around 36,550 drivers were conversing on cellular phones while driving on Michigan roadways. The trend line fitted to these data predicts that by the year 2010, driver hand-held cellular phone use will be around 8.6%, or 55,000 drivers at any given daylight hour. These results make it clear that cellular phone use while driving will continue to be an important traffic safety issue, and highlight the importance of continued attempts to generate new ways of alleviating this potential hazard.

  14. Molecular and Cellular Signaling

    CERN Document Server

    Beckerman, Martin

    2005-01-01

    A small number of signaling pathways, no more than a dozen or so, form a control layer that is responsible for all signaling in and between cells of the human body. The signaling proteins belonging to the control layer determine what kinds of cells are made during development and how they function during adult life. Malfunctions in the proteins belonging to the control layer are responsible for a host of human diseases ranging from neurological disorders to cancers. Most drugs target components in the control layer, and difficulties in drug design are intimately related to the architecture of the control layer. Molecular and Cellular Signaling provides an introduction to molecular and cellular signaling in biological systems with an emphasis on the underlying physical principles. The text is aimed at upper-level undergraduates, graduate students and individuals in medicine and pharmacology interested in broadening their understanding of how cells regulate and coordinate their core activities and how diseases ...

  15. Time lapse microscopy observation of cellular structural changes and image analysis of drug treated cancer cells to characterize the cellular heterogeneity.

    Science.gov (United States)

    Vaiyapuri, Periasamy S; Ali, Alshatwi A; Mohammad, Akbarsha A; Kandhavelu, Jeyalakshmi; Kandhavelu, Meenakshisundaram

    2015-01-01

    The effect of Calotropis gigantea latex (CGLX) on human mammary carcinoma cells is not well established. We present the results of this drug activity at total population and single cell level. CGLX inhibited the growth of MCF7 cancer cells at lower IC50 concentration (17 µL/mL). Microscopy of IC50 drug treated cells at 24 hr confirming the appearance of morphological characteristics of apoptotic and necrotic cells, associated with 70% of DNA damage. FACS analysis confirmed that, 10 and 20% of the disruption of cellular mitochondrial nature by at 24 and 48 h, respectively. Microscopic image analysis of total population level proved that MMP changes were statistically significant with P values. The cell to cell variation was confirmed by functional heterogeneity analysis which proves that CGLX was able to induce the apoptosis without the contribution of mitochondria. We conclude that CGLX inhibits cell proliferation, survival, and heterogeneity of pathways in human mammary carcinoma cells. © 2014 Wiley Periodicals, Inc.

  16. Deep analysis of cellular transcriptomes – LongSAGE versus classic MPSS

    Directory of Open Access Journals (Sweden)

    Davis Simon J

    2007-09-01

    Full Text Available Abstract Background Deep transcriptome analysis will underpin a large fraction of post-genomic biology. 'Closed' technologies, such as microarray analysis, only detect the set of transcripts chosen for analysis, whereas 'open' e.g. tag-based technologies are capable of identifying all possible transcripts, including those that were previously uncharacterized. Although new technologies are now emerging, at present the major resources for open-type analysis are the many publicly available SAGE (serial analysis of gene expression and MPSS (massively parallel signature sequencing libraries. These technologies have never been compared for their utility in the context of deep transcriptome mining. Results We used a single LongSAGE library of 503,431 tags and a "classic" MPSS library of 1,744,173 tags, both prepared from the same T cell-derived RNA sample, to compare the ability of each method to probe, at considerable depth, a human cellular transcriptome. We show that even though LongSAGE is more error-prone than MPSS, our LongSAGE library nevertheless generated 6.3-fold more genome-matching (and therefore likely error-free tags than the MPSS library. An analysis of a set of 8,132 known genes detectable by both methods, and for which there is no ambiguity about tag matching, shows that MPSS detects only half (54% the number of transcripts identified by SAGE (3,617 versus 1,955. Analysis of two additional MPSS libraries shows that each library samples a different subset of transcripts, and that in combination the three MPSS libraries (4,274,992 tags in total still only detect 73% of the genes identified in our test set using SAGE. The fraction of transcripts detected by MPSS is likely to be even lower for uncharacterized transcripts, which tend to be more weakly expressed. The source of the loss of complexity in MPSS libraries compared to SAGE is unclear, but its effects become more severe with each sequencing cycle (i.e. as MPSS tag length increases

  17. Performance Analysis of 3D Massive MIMO Cellular Systems with Collaborative Base Station

    Directory of Open Access Journals (Sweden)

    Xingwang Li

    2014-01-01

    Full Text Available Massive MIMO have drawn considerable attention as they enable significant capacity and coverage improvement in wireless cellular network. However, pilot contamination is a great challenge in massive MIMO systems. Under this circumstance, cooperation and three-dimensional (3D MIMO are emerging technologies to eliminate the pilot contamination and to enhance the performance relative to the traditional interference-limited implementations. Motivated by this, we investigate the achievable sum rate performance of MIMO systems in the uplink employing cooperative base station (BS and 3D MIMO systems. In our model, we consider the effects of both large-scale and small-scale fading, as well as the spatial correlation and indoor-to-outdoor high-rise propagation environment. In particular, we investigate the cooperative communication model based on 3D MIMO and propose a closed-form lower bound on the sum rate. Utilizing this bound, we pursue a “large-system” analysis and provide the asymptotic expression when the number of antennas at the BS grows large, and when the numbers of antennas at transceiver grow large with a fixed ratio. We demonstrate that the lower bound is very tight and becomes exact in the massive MIMO system limits. Finally, under the sum rate maximization condition, we derive the optimal number of UTs to be served.

  18. Analysis of cellular adhesion on superhydrophobic and superhydrophilic vertically aligned carbon nanotube scaffolds.

    Science.gov (United States)

    Machado, M M; Lobo, A O; Marciano, F R; Corat, E J; Corat, M A F

    2015-03-01

    We analyzed GFP cells after 24h cultivated on superhydrophilic vertically aligned carbon nanotube scaffolds. We produced two different densities of VACNT scaffolds on Ti using Ni or Fe catalysts. A simple and fast oxygen plasma treatment promoted the superhydrophilicity of them. We used five different substrates, such as: as-grown VACNT produced using Ni as catalyst (Ni), as-grown VACNT produced using Fe as catalyst (Fe), VACNT-O produced using Ni as catalyst (NiO), VACNT-O produced using Fe as catalyst (FeO) and Ti (control). The 4',6-diamidino-2-phenylindole reagent nuclei stained the adherent cells cultivated on five different analyzed scaffolds. We used fluorescence microscopy for image collect, ImageJ® to count adhered cell and GraphPad Prism 5® for statistical analysis. We demonstrated in crescent order: Fe, Ni, NiO, FeO and Ti scaffolds that had an improved cellular adhesion. Oxygen treatment associated to high VACNT density (group FeO) presented significantly superior cell adhesion up to 24h. However, they do not show significant differences compared with Ti substrates (control). We demonstrated that all the analyzed substrates were nontoxic. Also, we proposed that the density and hydrophilicity influenced the cell adhesion behavior. Copyright © 2014 Elsevier B.V. All rights reserved.

  19. Finite element analysis of the mechanical properties of cellular aluminium based on micro-computed tomography

    International Nuclear Information System (INIS)

    Veyhl, C.; Belova, I.V.; Murch, G.E.; Fiedler, T.

    2011-01-01

    Research highlights: → Elastic and plastic anisotropy is observed for both materials → Both show qualitatively similar characteristics with quantitative differences → Distinctly higher mechanical properties for closed-cell foam → The 'big' and 'small' models show good agreement for the closed-cell foam. - Abstract: In the present paper, the macroscopic mechanical properties of open-cell M-Pore sponge (porosity of 91-93%) and closed-cell Alporas foam (porosity of 80-86%) are investigated. The complex geometry of these cellular materials is scanned by micro-computed tomography and used in finite element (FE) analysis. The mechanical properties are determined by uni-axial compression simulations in three perpendicular directions (x-, y- and z-direction). M-Pore and Alporas exhibit the same qualitative mechanical characteristics but with quantitative differences. In both cases, strong anisotropy is observed for Young's modulus and the 0.002 offset yield stress. Furthermore, for the investigated relative density range a linear dependence between relative density and mechanical properties is found. Finally, a distinctly higher Young's modulus and 0.002 offset yield stress is observed for Alporas.

  20. Analysis by Mass Spectrometry of the Polar Lipids from the Cellular Membrane of Thermophilic Lactic Acid Bacteria

    Directory of Open Access Journals (Sweden)

    A. M. Seldes

    2000-03-01

    Full Text Available Fast atom bombardment (FAB technique was employed to determine the structure of polar lipids from the cellular membrane of Lactobacillus delbruekii ssp. bulgaricus and Streptococcus salivarius ssp. thermophilus. Analysis of spectra provided useful information about the molecular species and aminoacids constituents of the samples.

  1. Efficacy of Cellular Therapy for Diabetic Foot Ulcer: A Meta-Analysis of Randomized Controlled Clinical Trials.

    Science.gov (United States)

    Zhang, Ye; Deng, Hong; Tang, Zhouping

    2017-12-01

    Diabetes mellitus is a widely spread chronic disease with growing incidence worldwide, and diabetic foot ulcer is one of the most serious complications of diabetes. Cellular therapy has shown promise in the management of diabetic foot ulcer in many preclinical experiments and clinical researches. Here, we performed a meta-analysis to evaluate the efficacy and safety of cellular therapy in the management of diabetic foot ulcer. We systematically searched PubMed, MEDLINE, EMBASE, and Cochrane Library databases from inception to May 2017 for randomized controlled trials assessing the efficacy of cellular therapy in diabetic foot ulcer, and a meta-analysis was conducted. A total of 6 randomized controlled clinical trials involving 241 individuals were included in this meta-analysis. The results suggested that cellular therapy could help accelerating the healing of diabetic foot ulcer, presented as higher ankle-brachial index (mean difference = 0.17, 95% confidence interval [CI] = 0.11 to 0.23), higher transcutaneous oxygen pressure (standardized mean difference [SMD] = 1.43; 95% CI, 1.09- to 1.78), higher ulcer healing rate (relative risk [RR] = 1.78; 95% CI, 1.41 to 2.25), higher amputation-free survival (RR = 1.25; 95% CI, 1.11 to 1.40), and lower scale of pain (SMD = -1.69; 95% CI, -2.05 to -1.33). Furthermore, cellular therapy seemed to be safe, with no serious complications and low risk of short-term slight complications. Cellular therapy could accelerate the rate of diabetic foot ulcer healing and may be more efficient than standard therapy for diabetic foot treatment.

  2. Pricing Patterns of Cellular Phones and Phonecalls: A Segment-Level Analysis

    OpenAIRE

    Dipak C. Jain; Eitan Muller; Naufel J. Vilcassim

    1999-01-01

    One expectation of the U.S. Federal Communications Commission (FCC) in the early stages of the cellular communications industry was that the presence of two licensees in each market would ensure competition, and thereby result in declining prices over time for both cellular phones (handsets) and phonecalls. However, industry observers have noted recently that although the price of handsets has declined over time, the price of the phonecalls has not. We investigate this interesting pricing iss...

  3. Stress analysis of two-dimensional cellular materials with thick cell struts

    International Nuclear Information System (INIS)

    Lim, Do Hyung; Kim, Han Sung; Kim, Young Ho; Kim, Yoon Hyuk; Al-Hassani, S.T.S.

    2008-01-01

    Finite element analyses (FEA) were performed to thoroughly validate the collapse criteria of cellular materials presented in our previous companion paper. The maximum stress (von-Mises stress) on the cell strut surface and the plastic collapse stress were computed for two-dimensional (2D) cellular materials with thick cell struts. The results from the FEA were compared with those from theoretical criteria of authors. The FEA results were in good agreement with the theoretical results. The results indicate that when bending moment, axial and shear forces are considered, the maximum stress on the strut surface gives significantly different values in the tensile and compressive parts of the cell wall as well as in the two loading directions. Therefore, for the initial yielding of ductile cellular materials and the fracture of brittle cellular materials, in which the maximum stress on the strut surface is evaluated, it is necessary to consider not only the bending moment but also axial and shear forces. In addition, this study shows that for regular cellular materials with the identical strut geometry for all struts, the initial yielding and the plastic collapse under a biaxial state of stress occur not only in the inclined cell struts but also in the vertical struts. These FEA results support the theoretical conclusion of our previous companion paper that the anisotropic 2D cellular material has a truncated yield surface not only on the compressive quadrant but also on the tensile quadrant

  4. Direct speciation analysis of arsenic in sub-cellular compartments using micro-X-ray absorption spectroscopy

    International Nuclear Information System (INIS)

    Bacquart, Thomas; Deves, Guillaume; Ortega, Richard

    2010-01-01

    Identification of arsenic chemical species at a sub-cellular level is a key to understanding the mechanisms involved in arsenic toxicology and antitumor pharmacology. When performed with a microbeam, X-ray absorption near-edge structure (μ-XANES) enables the direct speciation analysis of arsenic in sub-cellular compartments avoiding cell fractionation and other preparation steps that might modify the chemical species. This methodology couples tracking of cellular organelles in a single cell by confocal or epifluorescence microscopy with local analysis of chemical species by μ-XANES. Here we report the results obtained with a μ-XANES experimental setup based on Kirkpatrick-Baez X-ray focusing optics that maintains high flux of incoming radiation (>10 11 ph/s) at micrometric spatial resolution (1.5x4.0 μm 2 ). This original experimental setup enabled the direct speciation analysis of arsenic in sub-cellular organelles with a 10 -15 g detection limit. μ-XANES shows that inorganic arsenite, As(OH) 3 , is the main form of arsenic in the cytosol, nucleus, and mitochondrial network of cultured cancer cells exposed to As 2 O 3 . On the other hand, a predominance of As(III) species is observed in HepG2 cells exposed to As(OH) 3 with, in some cases, oxidation to a pentavalent form in nuclear structures of HepG2 cells. The observation of intra-nuclear mixed redox states suggests an inter-individual variability in a cell population that can only be evidenced with direct sub-cellular speciation analysis.

  5. Hypergravity Loading the Cultured Osteoblasts: Modeling and Experimental Analysis of Cellular Morphology and the Cytoskeleton

    Science.gov (United States)

    Searby, N. D.; Steele, C. R.; Globus, R. K.; Dalton, Bonnie P. (Technical Monitor)

    2001-01-01

    Bone forming cells, osteoblasts, respond to various mechanical forces, including mechanical strain and fluid-induced shear stress. This study examined whether osteoblasts detect changes in gravity as a mechanical force, as assessed by cellular morphology and dimensions of the cytoskeletal network. We used modeling to evaluate how gravity influences cell morphology given theoretical differences in densities between the surrounding medium, cytoplasm, and nucleus. A mechanical model was built based on analysis of axisymmetric shell structures (Fast4 software) to study the effects of 10 times gravity (10G) on cell height. The model indicated 0.02% decrease in overall cell height when the medium was 10% denser than the nucleus or cytoplasm, 5.9 x 10(exp-5)% decrease when the nucleus was 10% denser than the cytoplasm or medium, and 1.3 x 10(exp-5)% decrease when the cell cytoplasm was 10% denser than the nucleus or medium. To experimentally evaluate the influence of gravity, cultured primary fetal rat osteoblasts were grown to near confluence and centrifuged at 10G for 3 hours. Actin, microtubules, and nuclei were fluorescently labeled and analyzed by confocal microscopy to determine overall microtubule and actin network height. Centrifugation led to an apparent reduction in height of both the microtubule (-16%) and the actin (-20%) networks relative to stationary controls. Thus, both modeling and experiments indicate that hypergravity reduces the height of the osteoblast cell layer and their microtubule and actin networks. This combination of modeling and experimental analyses will help us to better understand the mechanical loading of osteoblasts.

  6. Stark broadening of resonant Cr II 3d5-3d44p spectral lines in hot stellar atmospheres

    Science.gov (United States)

    Simić, Z.; Dimitrijević, M. S.; Sahal-Bréchot, S.

    2013-07-01

    New Stark broadening parameters of interest for the astrophysical, laboratory and technological plasma modelling, investigations and analysis for nine resonant Cr II multiplets have been determined within the semiclassical perturbation approach. In order to demonstrate one possibility for their usage in astrophysical plasma research, obtained results have been applied to the analysis of the Stark broadening influence on stellar spectral line shapes.

  7. Treatment Analysis in a Cancer Stem Cell Context Using a Tumor Growth Model Based on Cellular Automata.

    Science.gov (United States)

    Monteagudo, Ángel; Santos, José

    2015-01-01

    Cancer can be viewed as an emergent behavior in terms of complex system theory and artificial life, Cellular Automata (CA) being the tool most used for studying and characterizing the emergent behavior. Different approaches with CA models were used to model cancer growth. The use of the abstract model of acquired cancer hallmarks permits the direct modeling at cellular level, where a cellular automaton defines the mitotic and apoptotic behavior of cells, and allows for an analysis of different dynamics of the cellular system depending on the presence of the different hallmarks. A CA model based on the presence of hallmarks in the cells, which includes a simulation of the behavior of Cancer Stem Cells (CSC) and their implications for the resultant growth behavior of the multicellular system, was employed. This modeling of cancer growth, in the avascular phase, was employed to analyze the effect of cancer treatments in a cancer stem cell context. The model clearly explains why, after treatment against non-stem cancer cells, the regrowth capability of CSCs generates a faster regrowth of tumor behavior, and also shows that a continuous low-intensity treatment does not favor CSC proliferation and differentiation, thereby allowing an unproblematic control of future tumor regrowth. The analysis performed indicates that, contrary to the current attempts at CSC control, trying to make CSC proliferation more difficult is an important point to consider, especially in the immediate period after a standard treatment for controlling non-stem cancer cell proliferation.

  8. Treatment Analysis in a Cancer Stem Cell Context Using a Tumor Growth Model Based on Cellular Automata.

    Directory of Open Access Journals (Sweden)

    Ángel Monteagudo

    Full Text Available Cancer can be viewed as an emergent behavior in terms of complex system theory and artificial life, Cellular Automata (CA being the tool most used for studying and characterizing the emergent behavior. Different approaches with CA models were used to model cancer growth. The use of the abstract model of acquired cancer hallmarks permits the direct modeling at cellular level, where a cellular automaton defines the mitotic and apoptotic behavior of cells, and allows for an analysis of different dynamics of the cellular system depending on the presence of the different hallmarks. A CA model based on the presence of hallmarks in the cells, which includes a simulation of the behavior of Cancer Stem Cells (CSC and their implications for the resultant growth behavior of the multicellular system, was employed. This modeling of cancer growth, in the avascular phase, was employed to analyze the effect of cancer treatments in a cancer stem cell context. The model clearly explains why, after treatment against non-stem cancer cells, the regrowth capability of CSCs generates a faster regrowth of tumor behavior, and also shows that a continuous low-intensity treatment does not favor CSC proliferation and differentiation, thereby allowing an unproblematic control of future tumor regrowth. The analysis performed indicates that, contrary to the current attempts at CSC control, trying to make CSC proliferation more difficult is an important point to consider, especially in the immediate period after a standard treatment for controlling non-stem cancer cell proliferation.

  9. Cell patch seeding and functional analysis of cellularized scaffolds for tissue engineering

    Energy Technology Data Exchange (ETDEWEB)

    Kumar, P R Anil [Division of Implant Biology, Biomedical Technology Wing, Sree Chitra Tirunal Institute for Medical Sciences and Technology, Thiruvananthapuram, Kerala 695012 (India); Varma, H K [Bioceramics Laboratory, Biomedical Technology Wing, Sree Chitra Tirunal Institute for Medical Sciences and Technology, Thiruvananthapuram, Kerala 695012 (India); Kumary, T V [Division of Implant Biology, Biomedical Technology Wing, Sree Chitra Tirunal Institute for Medical Sciences and Technology, Thiruvananthapuram, Kerala 695012 (India)

    2007-03-01

    Cell seeding has a direct impact on the final structure and function of tissue constructs, especially for applications like tissue engineering and regeneration. In this study seeding cell patches retrieved from the thermoresponsive poly(N-isopropylacrylamide) surface were used to generate in vitro tissue constructs. Porous and dense bone substitute materials were cellularized using osteoblast cells by a patch transfer and a trypsin method. The function and proliferation of cells was analyzed after 7 days of culture. The relative cell growth rate was found to be higher in cellularized porous hydroxyapatite (PHA) than in dense hydroxyapatite. Live-dead staining confirmed viable cells inside the pores of PHA. Increased alkaline phosphatase activity of cells transferred by the cell patch over the trypsin method revealed the significance of cell patch seeding. This novel method of generating tissue constructs by cell patch seeding was successful in cellularizing scaffolds with intact cell function.

  10. Cell patch seeding and functional analysis of cellularized scaffolds for tissue engineering

    International Nuclear Information System (INIS)

    Kumar, P R Anil; Varma, H K; Kumary, T V

    2007-01-01

    Cell seeding has a direct impact on the final structure and function of tissue constructs, especially for applications like tissue engineering and regeneration. In this study seeding cell patches retrieved from the thermoresponsive poly(N-isopropylacrylamide) surface were used to generate in vitro tissue constructs. Porous and dense bone substitute materials were cellularized using osteoblast cells by a patch transfer and a trypsin method. The function and proliferation of cells was analyzed after 7 days of culture. The relative cell growth rate was found to be higher in cellularized porous hydroxyapatite (PHA) than in dense hydroxyapatite. Live-dead staining confirmed viable cells inside the pores of PHA. Increased alkaline phosphatase activity of cells transferred by the cell patch over the trypsin method revealed the significance of cell patch seeding. This novel method of generating tissue constructs by cell patch seeding was successful in cellularizing scaffolds with intact cell function

  11. Model Development and Process Analysis for Lean Cellular Design Planning in Aerospace Assembly and Manufacturing

    Science.gov (United States)

    Hilburn, Monty D.

    Successful lean manufacturing and cellular manufacturing execution relies upon a foundation of leadership commitment and strategic planning built upon solid data and robust analysis. The problem for this study was to create and employ a simple lean transformation planning model and review process that could be used to identify functional support staff resources required to plan and execute lean manufacturing cells within aerospace assembly and manufacturing sites. The lean planning model was developed using available literature for lean manufacturing kaizen best practices and validated through a Delphi panel of lean experts. The resulting model and a standardized review process were used to assess the state of lean transformation planning at five sites of an international aerospace manufacturing and assembly company. The results of the three day, on-site review were compared with baseline plans collected from each of the five sites to determine if there analyzed, with focus on three critical areas of lean planning: the number and type of manufacturing cells identified, the number, type, and duration of planned lean and continuous kaizen events, and the quantity and type of functional staffing resources planned to support the kaizen schedule. Summarized data of the baseline and on-site reviews was analyzed with descriptive statistics. ANOVAs and paired-t tests at 95% significance level were conducted on the means of data sets to determine if null hypotheses related to cell, kaizen event, and support resources could be rejected. The results of the research found significant differences between lean transformation plans developed by site leadership and plans developed utilizing the structured, on-site review process and lean transformation planning model. The null hypothesis that there was no difference between the means of pre-review and on-site cell counts was rejected, as was the null hypothesis that there was no significant difference in kaizen event plans. These

  12. Spatio-temporal analysis of brain electrical activity in epilepsy based on cellular nonlinear networks

    Science.gov (United States)

    Gollas, Frank; Tetzlaff, Ronald

    2009-05-01

    Epilepsy is the most common chronic disorder of the nervous system. Generally, epileptic seizures appear without foregoing sign or warning. The problem of detecting a possible pre-seizure state in epilepsy from EEG signals has been addressed by many authors over the past decades. Different approaches of time series analysis of brain electrical activity already are providing valuable insights into the underlying complex dynamics. But the main goal the identification of an impending epileptic seizure with a sufficient specificity and reliability, has not been achieved up to now. An algorithm for a reliable, automated prediction of epileptic seizures would enable the realization of implantable seizure warning devices, which could provide valuable information to the patient and time/event specific drug delivery or possibly a direct electrical nerve stimulation. Cellular Nonlinear Networks (CNN) are promising candidates for future seizure warning devices. CNN are characterized by local couplings of comparatively simple dynamical systems. With this property these networks are well suited to be realized as highly parallel, analog computer chips. Today available CNN hardware realizations exhibit a processing speed in the range of TeraOps combined with low power consumption. In this contribution new algorithms based on the spatio-temporal dynamics of CNN are considered in order to analyze intracranial EEG signals and thus taking into account mutual dependencies between neighboring regions of the brain. In an identification procedure Reaction-Diffusion CNN (RD-CNN) are determined for short segments of brain electrical activity, by means of a supervised parameter optimization. RD-CNN are deduced from Reaction-Diffusion Systems, which usually are applied to investigate complex phenomena like nonlinear wave propagation or pattern formation. The Local Activity Theory provides a necessary condition for emergent behavior in RD-CNN. In comparison linear spatio

  13. Stability analysis of impulsive fuzzy cellular neural networks with distributed delays and reaction-diffusion terms

    International Nuclear Information System (INIS)

    Li Zuoan; Li Kelin

    2009-01-01

    In this paper, we investigate a class of impulsive fuzzy cellular neural networks with distributed delays and reaction-diffusion terms. By employing the delay differential inequality with impulsive initial conditions and M-matrix theory, we find some sufficient conditions ensuring the existence, uniqueness and global exponential stability of equilibrium point for impulsive fuzzy cellular neural networks with distributed delays and reaction-diffusion terms. In particular, the estimate of the exponential converging index is also provided, which depends on the system parameters. An example is given to show the effectiveness of the results obtained here.

  14. Cellular angiofibroma with atypia or sarcomatous transformation: clinicopathologic analysis of 13 cases.

    Science.gov (United States)

    Chen, Eleanor; Fletcher, Christopher D M

    2010-05-01

    Cellular angiofibroma is a mesenchymal neoplasm that is characterized by a bland spindle cell component, morphologically reminiscent of spindle cell lipoma, and thick-walled vessels. The tumor occurs equally in men and women and usually arises in the inguino-scrotal or vulvovaginal regions. An earlier study of 51 cases from our group showed that the tumor follows a benign course without any tendency for recurrence. In 1 case, an intralesional microscopic nodule of pleomorphic liposarcoma was observed. The biologic significance of atypia or sarcomatous transformation in cellular angiofibroma remains uncertain. In this study, we characterized clinicopathologic features in 13 cases of cellular angiofibroma with morphologic atypia or sarcomatous transformation. Thirteen cases with atypia or sarcomatous transformation among 154 usual cellular angiofibromas identified between 1993 and 2009 were retrieved from consultation files. There were 12 females and 1 male ranging in age from 39 to 71 years (median age, 46 y). Tumor size ranged from 1.2 to 7.5 cm. In 11 cases, the tumors occurred in the vulva. One case each occurred in the paratesticular and hip regions. Most tumors were located in subcutaneous tissue. There were 4 cases of cellular angiofibroma with atypia. Three showed severely atypical cells as scattered foci within the cellular angiofibroma. One case showed a discrete nodule of atypical cells. There were 9 cases of cellular angiofibroma with morphologic features of sarcomatous transformation. In each case, abrupt transition to a discrete sarcomatous component was seen. Of these 9 cases, the sarcomatous component in 2 cases showed features of pleomorphic liposarcoma with multivacuolated lipoblasts readily identified. Three of these 9 cases showed discrete nodule(s) closely resembling atypical lipomatous tumor within usual cellular angiofibroma. In the remaining 4 cases, the sarcomatous component was composed of pleomorphic spindle cells arranged in various

  15. Digital and traditional slides for teaching cellular morphology: a comparative analysis of learning outcomes.

    Science.gov (United States)

    Solberg, Brooke L

    2012-01-01

    Recent advances in technology have brought forth an intriguing new tool for teaching hematopoietic cellular identification skills: the digital slide. Although digitized slides offer a number of appealing options for educators, little research has been done to examine how their utilization would impact learning outcomes. To fill that void, this study was designed to examine student performance, skill retention and transferability, and self-efficacy beliefs amongst undergraduate MLS students learning cellular morphology with digital versus traditional slides. Results showed that students learning with digital slides performed better on assessments containing only traditional slide specimens than students learning with traditional slides, both immediately following the learning activity and after a considerable duration of time. Students learning with digital slides also reported slightly higher levels of self-efficacy related to cellular identification. The findings of this study suggest that students learning cellular identification skills with digital slides are able to transfer that skill directly to traditional slides, and that their ability to identify cells is not negatively affected in present or future settings.

  16. Broadening and Simplifying the First SETI Protocol

    Science.gov (United States)

    Michaud, M. A. G.

    The Declaration of Principles Concerning Activities Following the Detection of Extraterrestrial Intelligence, known informally as the First SETI Protocol, is the primary existing international guidance on this subject. During the fifteen years since the document was issued, several people have suggested revisions or additional protocols. This article proposes a broadened and simplified text that would apply to the detection of alien technology in our solar system as well as to electromagnetic signals from more remote sources.

  17. LINE BROADENING AND THE SOLAR OPACITY PROBLEM

    Energy Technology Data Exchange (ETDEWEB)

    Krief, M.; Feigel, A.; Gazit, D., E-mail: menahem.krief@mail.huji.ac.il [The Racah Institute of Physics, The Hebrew University, 91904 Jerusalem (Israel)

    2016-06-20

    The calculation of line widths constitutes theoretical and computational challenges in the calculation of opacities of hot, dense plasmas. Opacity models use line broadening approximations that are untested at stellar interior conditions. Moreover, calculations of atomic spectra of the Sun indicate a large discrepancy in the K-shell line widths between several atomic codes and the Opacity-Project (OP). In this work, the atomic code STAR is used to study the sensitivity of solar opacities to line broadening. Variations in the solar opacity profile due to an increase of the Stark widths resulting from discrepancies with OP, are compared, in light of the solar opacity problem, with the required opacity variations of the present day Sun, as imposed by helioseismic and neutrino observations. The resulting variation profile is much larger than the discrepancy between different atomic codes, agrees qualitatively with the missing opacity profile, recovers about half of the missing opacity nearby the convection boundary, and has a little effect in the internal regions. Since it is hard to estimate quantitatively the uncertainty in the Stark widths, we show that an increase of all line widths by a factor of about ∼100 recovers quantitatively the missing opacity. These results emphasize the possibility that photoexcitation processes are not modeled properly, and more specifically, highlight the need for a better theoretical characterization of the line broadening phenomena at stellar interior conditions, and of the uncertainty due to the way it is implemented by atomic codes.

  18. A tandem regression-outlier analysis of a ligand cellular system for key structural modifications around ligand binding.

    Science.gov (United States)

    Lin, Ying-Ting

    2013-04-30

    A tandem technique of hard equipment is often used for the chemical analysis of a single cell to first isolate and then detect the wanted identities. The first part is the separation of wanted chemicals from the bulk of a cell; the second part is the actual detection of the important identities. To identify the key structural modifications around ligand binding, the present study aims to develop a counterpart of tandem technique for cheminformatics. A statistical regression and its outliers act as a computational technique for separation. A PPARγ (peroxisome proliferator-activated receptor gamma) agonist cellular system was subjected to such an investigation. Results show that this tandem regression-outlier analysis, or the prioritization of the context equations tagged with features of the outliers, is an effective regression technique of cheminformatics to detect key structural modifications, as well as their tendency of impact to ligand binding. The key structural modifications around ligand binding are effectively extracted or characterized out of cellular reactions. This is because molecular binding is the paramount factor in such ligand cellular system and key structural modifications around ligand binding are expected to create outliers. Therefore, such outliers can be captured by this tandem regression-outlier analysis.

  19. Strength analysis and modeling of cellular lattice structures manufactured using selective laser melting for tooling applications

    DEFF Research Database (Denmark)

    Mahshid, Rasoul; Hansen, Hans Nørgaard; Loft Højbjerre, Klaus

    2016-01-01

    Additive manufacturing is rapidly developing and gaining popularity for direct metal fabrication systems like selective laser melting (SLM). The technology has shown significant improvement for high-quality fabrication of lightweight design-efficient structures such as conformal cooling channels...... in injection molding tools and lattice structures. This research examines the effect of cellular lattice structures on the strength of workpieces additively manufactured from ultra high-strength steel powder. Two commercial SLM machines are used to fabricate cellular samples based on four architectures— solid......, hollow, lattice structure and rotated lattice structure. Compression test is applied to the specimens while they are deformed. The analytical approach includes finite element (FE), geometrical and mathematical models for prediction of collapse strength. The results from the the models are verified...

  20. Performance analysis of a handoff scheme for two-tier cellular CDMA networks

    Directory of Open Access Journals (Sweden)

    Ahmed Hamad

    2011-07-01

    Full Text Available A two-tier model is used in cellular networks to improve the Quality of Service (QoS, namely to reduce the blocking probability of new calls and the forced termination probability of ongoing calls. One tier, the microcells, is used for slow or stationary users, and the other, the macrocell, is used for high speed users. In Code-Division Multiple-Access (CDMA cellular systems, soft handoffs are supported, which provides ways for further QoS improvement. In this paper, we introduce such a way; namely, a channel borrowing scheme used in conjunction with a First-In-First-Out (FIFO queue in the macrocell tier. A multidimensional Markov chain to model the resulting system is established, and an iterative technique to find the steady-state probability distribution is utilized. This distribution is then used to find the performance measures of interest: new call blocking probability, and forced termination probability.

  1. Histomorphometric analysis of nuclear and cellular volumetric alterations in oral lichen planus, lichenoid lesions and normal oral mucosa using image analysis software.

    Science.gov (United States)

    Venkatesiah, Sowmya S; Kale, Alka D; Hallikeremath, Seema R; Kotrashetti, Vijayalakshmi S

    2013-01-01

    Lichen planus is a chronic inflammatory mucocutaneous disease that clinically and histologically resembles lichenoid lesions, although the latter has a different etiology. Though criteria have been suggested for differentiating oral lichen planus from lichenoid lesions, confusion still prevails. To study the cellular and nuclear volumetric features in the epithelium of normal mucosa, lichen planus, and lichenoid lesions to determine variations if any. A retrospective study was done on 25 histologically diagnosed cases each of oral lichen planus, oral lichenoid lesions, and normal oral mucosa. Cellular and nuclear morphometric measurements were assessed on hematoxylin and eosin sections using image analysis software. Analysis of variance test (ANOVA) and Tukey's post-hoc test. The basal cells of oral lichen planus showed a significant increase in the mean nuclear and cellular areas, and in nuclear volume; there was a significant decrease in the nuclear-cytoplasmic ratio as compared to normal mucosa. The suprabasal cells showed a significant increase in nuclear and cellular areas, nuclear diameter, and nuclear and cellular volumes as compared to normal mucosa. The basal cells of oral lichenoid lesions showed significant difference in the mean cellular area and the mean nuclear-cytoplasmic ratio as compared to normal mucosa, whereas the suprabasal cells differed significantly from normal mucosa in the mean nuclear area and the nuclear and cellular volumes. Morphometry can differentiate lesions of oral lichen planus and oral lichenoid lesions from normal oral mucosa. Thus, morphometry may serve to discriminate between normal and premalignant lichen planus and lichenoid lesions. These lesions might have a high risk for malignant transformation and may behave in a similar manner with respect to malignant transformation.

  2. From forensic epigenetics to forensic epigenomics: broadening DNA investigative intelligence.

    Science.gov (United States)

    Vidaki, Athina; Kayser, Manfred

    2017-12-21

    Human genetic variation is a major resource in forensics, but does not allow all forensically relevant questions to be answered. Some questions may instead be addressable via epigenomics, as the epigenome acts as an interphase between the fixed genome and the dynamic environment. We envision future forensic applications of DNA methylation analysis that will broaden DNA-based forensic intelligence. Together with genetic prediction of appearance and biogeographic ancestry, epigenomic lifestyle prediction is expected to increase the ability of police to find unknown perpetrators of crime who are not identifiable using current forensic DNA profiling.

  3. Development of new probes for NMR based analysis of biomolecules' cellular functions

    International Nuclear Information System (INIS)

    Fernandes, Laetitia

    2015-01-01

    Most NMR studies are carried out in vitro, but the structure and dynamics of some biomolecules inside cells differ from those in vitro. It thus becomes interesting to analyze biomolecules such as proteins in their natural environment: the cell. Recent progress of in cell NMR allowed to better understand the behaviour of proteins: their dynamics and their interactions with other biomolecules in the cell. But the low concentration of proteins leads to low signal intensity. Moreover, the viscosity of the environment induces faster transverse relaxation, resulting in line broadening for proteins signals. The use of the Long-Lived States and Coherencies (LLS and LLC, respectively) as well as dissolution Dynamic Nuclear Polarization (dissolution-DNP) can improve NMR observations in cells. LLS were used to understand and characterize the structure of the N-terminal domain of c-Src, which is intrinsically disordered. To follow the phosphorylation of proteins, a first preliminary study of a 21-aa peptides derived from IKBa electroporated into HepG2 cell lines was carried out. (author)

  4. Multi-scale modeling in morphogenesis: a critical analysis of the cellular Potts model.

    Directory of Open Access Journals (Sweden)

    Anja Voss-Böhme

    Full Text Available Cellular Potts models (CPMs are used as a modeling framework to elucidate mechanisms of biological development. They allow a spatial resolution below the cellular scale and are applied particularly when problems are studied where multiple spatial and temporal scales are involved. Despite the increasing usage of CPMs in theoretical biology, this model class has received little attention from mathematical theory. To narrow this gap, the CPMs are subjected to a theoretical study here. It is asked to which extent the updating rules establish an appropriate dynamical model of intercellular interactions and what the principal behavior at different time scales characterizes. It is shown that the longtime behavior of a CPM is degenerate in the sense that the cells consecutively die out, independent of the specific interdependence structure that characterizes the model. While CPMs are naturally defined on finite, spatially bounded lattices, possible extensions to spatially unbounded systems are explored to assess to which extent spatio-temporal limit procedures can be applied to describe the emergent behavior at the tissue scale. To elucidate the mechanistic structure of CPMs, the model class is integrated into a general multiscale framework. It is shown that the central role of the surface fluctuations, which subsume several cellular and intercellular factors, entails substantial limitations for a CPM's exploitation both as a mechanistic and as a phenomenological model.

  5. Protein Corona Analysis of Silver Nanoparticles Links to Their Cellular Effects.

    Science.gov (United States)

    Juling, Sabine; Niedzwiecka, Alicia; Böhmert, Linda; Lichtenstein, Dajana; Selve, Sören; Braeuning, Albert; Thünemann, Andreas F; Krause, Eberhard; Lampen, Alfonso

    2017-11-03

    The breadth of applications of nanoparticles and the access to food-associated consumer products containing nanosized materials lead to oral human exposure to such particles. In biological fluids nanoparticles dynamically interact with biomolecules and form a protein corona. Knowledge about the protein corona is of great interest for understanding the molecular effects of particles as well as their fate inside the human body. We used a mass spectrometry-based toxicoproteomics approach to elucidate mechanisms of toxicity of silver nanoparticles and to comprehensively characterize the protein corona formed around silver nanoparticles in Caco-2 human intestinal epithelial cells. Results were compared with respect to the cellular function of proteins either affected by exposure to nanoparticles or present in the protein corona. A transcriptomic data set was included in the analyses in order to obtain a combined multiomics view of nanoparticle-affected cellular processes. A relationship between corona proteins and the proteomic or transcriptomic responses was revealed, showing that differentially regulated proteins or transcripts were engaged in the same cellular signaling pathways. Protein corona analyses of nanoparticles in cells might therefore help in obtaining information about the molecular consequences of nanoparticle treatment.

  6. Proteomic Analysis of Serum Opsonins Impacting Biodistribution and Cellular Association of Porous Silicon Microparticles

    Directory of Open Access Journals (Sweden)

    Rita E. Serda

    2011-01-01

    Full Text Available Mass transport of drug delivery vehicles is guided by particle properties, such as size, shape, composition, and surface chemistry, as well as biomolecules and serum proteins that adsorb to the particle surface. In an attempt to identify serum proteins influencing cellular associations and biodistribution of intravascularly injected particles, we used two-dimensional gel electrophoresis and mass spectrometry to identify proteins eluted from the surface of cationic and anionic silicon microparticles. Cationic microparticles displayed a 25-fold greater abundance of Ig light variable chain, fibrinogen, and complement component 1 compared to their anionic counterparts. Anionic microparticles were found to accumulate in equal abundance in murine liver and spleen, whereas cationic microparticles showed preferential accumulation in the spleen. Immunohistochemistry supported macrophage uptake of both anionic and cationic microparticles in the liver, as well as evidence of association of cationic microparticles with hepatic endothelial cells. Furthermore, scanning electron micrographs supported cellular competition for cationic microparticles by endothelial cells and macrophages. Despite high macrophage content in the lungs and tumor, microparticle uptake by these cells was minimal, supporting differences in the repertoire of surface receptors expressed by tissue-specific macrophages. In summary, particle surface chemistry drives selective binding of serum components impacting cellular interactions and biodistribution.

  7. Proteomic Analysis of Serum Opsonins Impacting Biodistribution and Cellular Association of Porous Silicon Microparticles

    Science.gov (United States)

    Serda, Rita E.; Blanco, Elvin; Mack, Aaron; Stafford, Susan J.; Amra, Sarah; Li, Qingpo; van de Ven, Anne L.; Tanaka, Takemi; Torchilin, Vladimir P.; Wiktorowicz, John E.; Ferrari, Mauro

    2014-01-01

    Mass transport of drug delivery vehicles is guided by particle properties, such as shape, composition and surface chemistry, as well as biomolecules and serum proteins that adsorb to the particle surface. In an attempt to identify serum proteins influencing cellular associations and biodistribution of intravascularly injected particles, we used two dimensional gel electrophoresis and mass spectrometry to identify proteins eluted from the surface of cationic and anionic silicon microparticles. Cationic microparticles displayed a 25-fold greater abundance of Ig light chain variable region, fibrinogen, and complement component 1 compared to their anionic counterparts. The anionic-surface favored equal accumulation of microparticles in the liver and spleen, while cationic-surfaces favored preferential accumulation in the spleen. Immunohistochemistry supported macrophage internalization of both anionic and cationic silicon microparticles in the liver, as well as evidence of association of cationic microparticles with hepatic endothelial cells. Furthermore, scanning electron micrographs supported cellular competition for cationic microparticles by endothelial cells and macrophages. Despite high macrophage content in the lungs and tumor, microparticle uptake by these cells was minimal, supporting differences in the repertoire of surface receptors expressed by tissue-specific macrophages. In summary, particle surface chemistry drives selective binding of serum components impacting cellular interactions and biodistribution. PMID:21303614

  8. Histogram analysis parameters of apparent diffusion coefficient reflect tumor cellularity and proliferation activity in head and neck squamous cell carcinoma.

    Science.gov (United States)

    Surov, Alexey; Meyer, Hans Jonas; Winter, Karsten; Richter, Cindy; Hoehn, Anna-Kathrin

    2018-05-04

    Our purpose was to analyze associations between apparent diffusion coefficient (ADC) histogram analysis parameters and histopathologicalfeatures in head and neck squamous cell carcinoma (HNSCC). The study involved 32 patients with primary HNSCC. For every tumor, the following histogram analysis parameters were calculated: ADCmean, ADCmax, ADC min , ADC median , ADC mode , P10, P25, P75, P90, kurtosis, skewness, and entropy. Furthermore, proliferation index KI 67, cell count, total and average nucleic areas were estimated. Spearman's correlation coefficient (p) was used to analyze associations between investigated parameters. In overall sample, all ADC values showed moderate inverse correlations with KI 67. All ADC values except ADCmax correlated inversely with tumor cellularity. Slightly correlations were identified between total/average nucleic area and ADC mean , ADC min , ADC median , and P25. In G1/2 tumors, only ADCmode correlated well with Ki67. No statistically significant correlations between ADC parameters and cellularity were found. In G3 tumors, Ki 67 correlated with all ADC parameters except ADCmode. Cell count correlated well with all ADC parameters except ADCmax. Total nucleic area correlated inversely with ADC mean , ADC min , ADC median , P25, and P90. ADC histogram parameters reflect proliferation potential and cellularity in HNSCC. The associations between histopathology and imaging depend on tumor grading.

  9. Stochastic multi-scale analysis of homogenised properties considering uncertainties in cellular solid microstructures using a first-order perturbation

    Directory of Open Access Journals (Sweden)

    Khairul Salleh Basaruddin

    Full Text Available Randomness in the microstructure due to variations in microscopic properties and geometrical information is used to predict the stochastically homogenised properties of cellular media. Two stochastic problems at the micro-scale level that commonly occur due to fabrication inaccuracies, degradation mechanisms or natural heterogeneity were analysed using a stochastic homogenisation method based on a first-order perturbation. First, the influence of Young's modulus variation in an adhesive on the macroscopic properties of an aluminium-adhesive honeycomb structure was investigated. The fluctuations in the microscopic properties were then combined by varying the microstructure periodicity in a corrugated-core sandwich plate to obtain the variation of the homogenised property. The numerical results show that the uncertainties in the microstructure affect the dispersion of the homogenised property. These results indicate the importance of the presented stochastic multi-scale analysis for the design and fabrication of cellular solids when considering microscopic random variation.

  10. Clarification of complex phenomena in nuclear plants present status and future trend of fluid analysis by cellular automaton methods

    International Nuclear Information System (INIS)

    Kato, Yasuyoshi

    1999-01-01

    Since most of complex phenomena comprise of various elementary processes e.g., fluid flow, heat conduction, phase transition, chemical reaction, structural deformation, and these processes interact each other nonlinearly, the complex phenomena cannot be easily clarified by such the conventional topdown approaches as describe phenomena by using differential equations. In contrast to the topdown approaches where the differential equations are located at the top of the analysis procedures, these are bottomup approaches where phenomena are reproduced by local interaction of particles on cells. Cellular automata are one of the typical bottomup approaches. The basic principle, computer simulation results, and massively parallel processors for the cellular automata are reviewed and perspectives of the bottomup approach are discussed on clarification of the complex phenomena in nuclear plants. The computer simulations mainly deal with fluid flows and phase interfacial phenomena. (author)

  11. Performance Analysis of Dual-Polarized Massive MIMO System with Human-Care IoT Devices for Cellular Networks

    Directory of Open Access Journals (Sweden)

    Jun-Ki Hong

    2018-01-01

    Full Text Available The performance analysis of the dual-polarized massive multiple-input multiple-output (MIMO system with Internet of things (IoT devices is studied when outdoor human-care IoT devices are connected to a cellular network via a dual-polarized massive MIMO system. The research background of the performance analysis of dual-polarized massive MIMO system with IoT devices is that recently the data usage of outdoor human-care IoT devices has increased. Therefore, the outdoor human-care IoT devices are necessary to connect with 5G cellular networks which can expect 1000 times higher performance compared with 4G cellular networks. Moreover, in order to guarantee the safety of the patient for emergency cases, a human-care Iot device must be connected to cellular networks which offer more stable communication for outdoors compared to short-range communication technologies such as Wi-Fi, Zigbee, and Bluetooth. To analyze the performance of the dual-polarized massive MIMO system for human-care IoT devices, a dual-polarized MIMO spatial channel model (SCM is proposed which considers depolarization effect between the dual-polarized transmit-antennas and the receive-antennas. The simulation results show that the performance of the dual-polarized massive MIMO system is improved about 16% to 92% for 20 to 150 IoT devices compared to conventional single-polarized massive MIMO system for identical size of the transmit array.

  12. Cellular gravity

    NARCIS (Netherlands)

    F.C. Gruau; J.T. Tromp (John)

    1999-01-01

    textabstractWe consider the problem of establishing gravity in cellular automata. In particular, when cellular automata states can be partitioned into empty, particle, and wall types, with the latter enclosing rectangular areas, we desire rules that will make the particles fall down and pile up on

  13. Real-time cellular exometabolome analysis with a microfluidic-mass spectrometry platform.

    Directory of Open Access Journals (Sweden)

    Christina C Marasco

    Full Text Available To address the challenges of tracking the multitude of signaling molecules and metabolites that is the basis of biological complexity, we describe a strategy to expand the analytical techniques for dynamic systems biology. Using microfluidics, online desalting, and mass spectrometry technologies, we constructed and validated a platform well suited for sampling the cellular microenvironment with high temporal resolution. Our platform achieves success in: automated cellular stimulation and microenvironment control; reduced non-specific adsorption to polydimethylsiloxane due to surface passivation; real-time online sample collection; near real-time sample preparation for salt removal; and real-time online mass spectrometry. When compared against the benchmark of "in-culture" experiments combined with ultraperformance liquid chromatography-electrospray ionization-ion mobility-mass spectrometry (UPLC-ESI-IM-MS, our platform alleviates the volume challenge issues caused by dilution of autocrine and paracrine signaling and dramatically reduces sample preparation and data collection time, while reducing undesirable external influence from various manual methods of manipulating cells and media (e.g., cell centrifugation. To validate this system biologically, we focused on cellular responses of Jurkat T cells to microenvironmental stimuli. Application of these stimuli, in conjunction with the cell's metabolic processes, results in changes in consumption of nutrients and secretion of biomolecules (collectively, the exometabolome, which enable communication with other cells or tissues and elimination of waste. Naïve and experienced T-cell metabolism of cocaine is used as an exemplary system to confirm the platform's capability, highlight its potential for metabolite discovery applications, and explore immunological memory of T-cell drug exposure. Our platform proved capable of detecting metabolomic variations between naïve and experienced Jurkat T cells

  14. Modeling and Performance Analysis for Cell Access and Handoff Schemes in Two-Tier Cellular Networks

    Directory of Open Access Journals (Sweden)

    Kyungkoo Jun

    2014-01-01

    Full Text Available We investigate the effects of handoff on system performance in two-tier cellular networks. Two of the main performance metrics are new call blocking probability and handoff drop rate. We develop analytical models to evaluate the performance of two different handoff schemes. One scheme considers only femto-to-macrocell handoff while the other is bidirectional including macro-to-femtocell handoff. Our model is more elaborate than existing ones which have not considered the mobility of mobile stations. Numerical results show that the bidirectional scheme performs better than the femto-to-macrocell handoff as it achieves lower blocking probability and drop rate.

  15. Evolution of the cellular communication system: An analysis in the Computational Paradigm

    International Nuclear Information System (INIS)

    Tahir Shah, K.

    1995-03-01

    We discuss the problem of the evolution of the cellular communication system from the RNA world to progenote to the modern cell. Our method analyses syntactical structure of molecular fossils in the non-coding regions of DNA within the information-processing gene model developed earlier. We concluded that sequence-specific binding is an ancient communication process with its origin in the RNA world. Moreover, we illustrate our viewpoint using four evolution snapshots from the first RNA segments, some 4.1. billion years ago, to the first cell, 3.8 billion years ago. (author). 31 refs

  16. Proteomic analysis of cellular response induced by boron neutron capture reaction in human squamous cell carcinoma SAS cells

    International Nuclear Information System (INIS)

    Sato, Akira; Itoh, Tasuku; Imamichi, Shoji; Kikuhara, Sota; Fujimori, Hiroaki; Hirai, Takahisa; Saito, Soichiro; Sakurai, Yoshinori; Tanaka, Hiroki; Nakamura, Hiroyuki; Suzuki, Minoru

    2015-01-01

    To understand the mechanism of cell death induced by boron neutron capture reaction (BNCR), we performed proteome analyses of human squamous tumor SAS cells after BNCR. Cells were irradiated with thermal neutron beam at KUR after incubation under boronophenylalanine (BPA)(+) and BPA(−) conditions. BNCR mainly induced typical apoptosis in SAS cells 24 h post-irradiation. Proteomic analysis in SAS cells suggested that proteins functioning in endoplasmic reticulum, DNA repair, and RNA processing showed dynamic changes at early phase after BNCR and could be involved in the regulation of cellular response to BNCR. We found that the BNCR induces fragments of endoplasmic reticulum-localized lymphoid-restricted protein (LRMP). The fragmentation of LRMP was also observed in the rat tumor graft model 20 hours after BNCT treatment carried out at the National Nuclear Center of the Republic of Kazakhstan. These data suggest that dynamic changes of LRMP could be involved during cellular response to BNCR. - Highlights: • BNCR in human squamous carcinoma cells caused typical apoptotic features. • BNCR induced fragments of LRMP, in human squamous carcinoma and rat tumor model. • The fragmentation of LRMP could be involved in cellular response to BNCR.

  17. Assessing cellular toxicities in fibroblasts upon exposure to lipid-based nanoparticles: a high content analysis approach

    Science.gov (United States)

    Solmesky, Leonardo J.; Shuman, Michal; Goldsmith, Meir; Weil, Miguel; Peer, Dan

    2011-12-01

    Lipid-based nanoparticles (LNPs) are widely used for the delivery of drugs and nucleic acids. Although most of them are considered safe, there is confusing evidence in the literature regarding their potential cellular toxicities. Moreover, little is known about the recovery process cells undergo after a cytotoxic insult. We have previously studied the systemic effects of common LNPs with different surface charge (cationic, anionic, neutral) and revealed that positively charged LNPs ((+)LNPs) activate pro-inflammatory cytokines and induce interferon response by acting as an agonist of Toll-like receptor 4 on immune cells. In this study, we focused on the response of human fibroblasts exposed to LNPs and their cellular recovery process. To this end, we used image-based high content analysis (HCA). Using this strategy, we were able to show simultaneously, in several intracellular parameters, that fibroblasts can recover from the cytotoxic effects of (+)LNPs. The use of HCA opens new avenues in understanding cellular response and nanotoxicity and may become a valuable tool for screening safe materials for drug delivery and tissue engineering.

  18. Assessing cellular toxicities in fibroblasts upon exposure to lipid-based nanoparticles: a high content analysis approach

    International Nuclear Information System (INIS)

    Solmesky, Leonardo J; Weil, Miguel; Shuman, Michal; Goldsmith, Meir; Peer, Dan

    2011-01-01

    Lipid-based nanoparticles (LNPs) are widely used for the delivery of drugs and nucleic acids. Although most of them are considered safe, there is confusing evidence in the literature regarding their potential cellular toxicities. Moreover, little is known about the recovery process cells undergo after a cytotoxic insult. We have previously studied the systemic effects of common LNPs with different surface charge (cationic, anionic, neutral) and revealed that positively charged LNPs ((+)LNPs) activate pro-inflammatory cytokines and induce interferon response by acting as an agonist of Toll-like receptor 4 on immune cells. In this study, we focused on the response of human fibroblasts exposed to LNPs and their cellular recovery process. To this end, we used image-based high content analysis (HCA). Using this strategy, we were able to show simultaneously, in several intracellular parameters, that fibroblasts can recover from the cytotoxic effects of (+)LNPs. The use of HCA opens new avenues in understanding cellular response and nanotoxicity and may become a valuable tool for screening safe materials for drug delivery and tissue engineering.

  19. Searching for cellular partners of hantaviral nonstructural protein NSs: Y2H screening of mouse cDNA library and analysis of cellular interactome.

    Science.gov (United States)

    Rönnberg, Tuomas; Jääskeläinen, Kirsi; Blot, Guillaume; Parviainen, Ville; Vaheri, Antti; Renkonen, Risto; Bouloy, Michele; Plyusnin, Alexander

    2012-01-01

    Hantaviruses (Bunyaviridae) are negative-strand RNA viruses with a tripartite genome. The small (S) segment encodes the nucleocapsid protein and, in some hantaviruses, also the nonstructural protein (NSs). The aim of this study was to find potential cellular partners for the hantaviral NSs protein. Toward this aim, yeast two-hybrid (Y2H) screening of mouse cDNA library was performed followed by a search for potential NSs protein counterparts via analyzing a cellular interactome. The resulting interaction network was shown to form logical, clustered structures. Furthermore, several potential binding partners for the NSs protein, for instance ACBD3, were identified and, to prove the principle, interaction between NSs and ACBD3 proteins was demonstrated biochemically.

  20. Train flow chaos analysis based on an improved cellular automata model

    International Nuclear Information System (INIS)

    Meng, Xuelei; Xiang, Wanli; Jia, Limin; Xu, Jie

    2015-01-01

    To control the chaos in the railway traffic flow and offer valuable information for the dispatchers of the railway system, an improved cellular model is presented to detect and analyze the chaos in the traffic flow. We first introduce the working mechanism of moving block system, analyzing the train flow movement characteristics. Then we improve the cellular model on the evolution rules to adjust the train flow movement. We give the train operation steps from three cases: the trains running on a railway section, a train will arrive in a station and a train will departure from a station. We simulate 4 trains to run on a high speed section fixed with moving block system and record the distances between the neighbor trains and draw the Poincare section to analyze the chaos in the train operation. It is concluded that there is not only chaos but order in the train operation system with moving blocking system and they can interconvert to each other. The findings have the potential value in train dispatching system construction and offer supporting information for the daily dispatching work.

  1. Commitment to Broadening Participation at NOAO

    Science.gov (United States)

    Garmany, Catharine D.; Norman, D.

    2011-01-01

    AURA and NOAO take seriously the importance of Broadening Participation in Astronomy. At the request of the AURA President, each of the AURA centers (NOAO, NSO, STSCI, Gemini) appointed a Diversity Advocates (DA). At NOAO this job is shared by Dara Norman and Katy Garmany, who were appointed by Dave Silva in Jan 2009. The DA's are members of the AURA Committee on Workforce and Diversity (WDC), a designated subcommittee of the AURA Board of Directors. The role of this committee includes reviewing activities and plans on an AURA wide basis aimed at broadening the participation within AURA, and reviewing AURA wide policies on the workforce. At NOAO, the role of the DAs spans a number of departments and activities. They serve on observatory search committees, and offer suggestions on how NOAO job searches can reach the most diverse audience. The DA's job is to insure that NOAO actively pursues every opportunity to increase diversity: to this end they are involved in outreach and educational activities that focus on workplace development and encourage inclusion of woman, minorities and persons with disabilities.

  2. A differential genome-wide transcriptome analysis: impact of cellular copper on complex biological processes like aging and development.

    Directory of Open Access Journals (Sweden)

    Jörg Servos

    Full Text Available The regulation of cellular copper homeostasis is crucial in biology. Impairments lead to severe dysfunctions and are known to affect aging and development. Previously, a loss-of-function mutation in the gene encoding the copper-sensing and copper-regulated transcription factor GRISEA of the filamentous fungus Podospora anserina was reported to lead to cellular copper depletion and a pleiotropic phenotype with hypopigmentation of the mycelium and the ascospores, affected fertility and increased lifespan by approximately 60% when compared to the wild type. This phenotype is linked to a switch from a copper-dependent standard to an alternative respiration leading to both a reduced generation of reactive oxygen species (ROS and of adenosine triphosphate (ATP. We performed a genome-wide comparative transcriptome analysis of a wild-type strain and the copper-depleted grisea mutant. We unambiguously assigned 9,700 sequences of the transcriptome in both strains to the more than 10,600 predicted and annotated open reading frames of the P. anserina genome indicating 90% coverage of the transcriptome. 4,752 of the transcripts differed significantly in abundance with 1,156 transcripts differing at least 3-fold. Selected genes were investigated by qRT-PCR analyses. Apart from this general characterization we analyzed the data with special emphasis on molecular pathways related to the grisea mutation taking advantage of the available complete genomic sequence of P. anserina. This analysis verified but also corrected conclusions from earlier data obtained by single gene analysis, identified new candidates of factors as part of the cellular copper homeostasis system including target genes of transcription factor GRISEA, and provides a rich reference source of quantitative data for further in detail investigations. Overall, the present study demonstrates the importance of systems biology approaches also in cases were mutations in single genes are analyzed to

  3. Imaging in cellular and tissue engineering

    CERN Document Server

    Yu, Hanry

    2013-01-01

    Details on specific imaging modalities for different cellular and tissue engineering applications are scattered throughout articles and chapters in the literature. Gathering this information into a single reference, Imaging in Cellular and Tissue Engineering presents both the fundamentals and state of the art in imaging methods, approaches, and applications in regenerative medicine. The book underscores the broadening scope of imaging applications in cellular and tissue engineering. It covers a wide range of optical and biological applications, including the repair or replacement of whole tiss

  4. Defect-tolerance analysis of fundamental quantum-dot cellular automata devices

    Directory of Open Access Journals (Sweden)

    Yongqiang Zhang

    2015-04-01

    Full Text Available Quantum-dot cellular automata (QCA is a burgeoning technology at the nano-scale range, with the potential for lower power consumption, smaller size and faster speed than conventional complementary metal–oxide semiconductor-based technology. Because of its ultra-density integration and its inherent physical properties, fault-tolerance is an important property to consider in the research and manufacture of QCA. In this paper, one type of defect, in which displacement and misalignment occur coinstantaneously, is investigated in detail on rudimentary QCA devices (majority voter (MV, inverter, wire with QCADesigner. Another MV with rotated cells is also proposed, and it is more robust than the original one. Simulation results present the defect-tolerance of these devices, that is, the maximum precise region the defective cell can be moved moreover, with correct logical function. These conclusions have a meaningful guiding significance for QCA physical implementation and fault-tolerance research.

  5. Structure-based analysis of CysZ-mediated cellular uptake of sulfate

    Science.gov (United States)

    Assur Sanghai, Zahra; Liu, Qun; Clarke, Oliver B; Belcher-Dufrisne, Meagan; Wiriyasermkul, Pattama; Giese, M Hunter; Leal-Pinto, Edgar; Kloss, Brian; Tabuso, Shantelle; Love, James; Punta, Marco; Banerjee, Surajit; Rajashankar, Kanagalaghatta R; Rost, Burkhard; Logothetis, Diomedes; Quick, Matthias; Hendrickson, Wayne A

    2018-01-01

    Sulfur, most abundantly found in the environment as sulfate (SO42-), is an essential element in metabolites required by all living cells, including amino acids, co-factors and vitamins. However, current understanding of the cellular delivery of SO42- at the molecular level is limited. CysZ has been described as a SO42- permease, but its sequence family is without known structural precedent. Based on crystallographic structure information, SO42- binding and flux experiments, we provide insight into the molecular mechanism of CysZ-mediated translocation of SO42- across membranes. CysZ structures from three different bacterial species display a hitherto unknown fold and have subunits organized with inverted transmembrane topology. CysZ from Pseudomonas denitrificans assembles as a trimer of antiparallel dimers and the CysZ structures from two other species recapitulate dimers from this assembly. Mutational studies highlight the functional relevance of conserved CysZ residues. PMID:29792261

  6. Stochastic narrow escape in molecular and cellular biology analysis and applications

    CERN Document Server

    Holcman, David

    2015-01-01

    This book covers recent developments in the non-standard asymptotics of the mathematical narrow escape problem in stochastic theory, as well as applications of the narrow escape problem in cell biology. The first part of the book concentrates on mathematical methods, including advanced asymptotic methods in partial equations, and is aimed primarily at applied mathematicians and theoretical physicists who are interested in biological applications. The second part of the book is intended for computational biologists, theoretical chemists, biochemists, biophysicists, and physiologists. It includes a summary of output formulas from the mathematical portion of the book and concentrates on their applications in modeling specific problems in theoretical molecular and cellular biology. Critical biological processes, such as synaptic plasticity and transmission, activation of genes by transcription factors, or double-strained DNA break repair, are controlled by diffusion in structures that have both large and small sp...

  7. Monte Carlo simulation and gaussian broaden techniques for full energy peak of characteristic X-ray in EDXRF

    International Nuclear Information System (INIS)

    Li Zhe; Liu Min; Shi Rui; Wu Xuemei; Tuo Xianguo

    2012-01-01

    Background: Non-standard analysis (NSA) technique is one of the most important development directions of energy dispersive X-ray fluorescence (EDXRF). Purpose: This NSA technique is mainly based on Monte Carlo (MC) simulation and full energy peak broadening, which were studied preliminarily in this paper. Methods: A kind of MC model was established for Si-PIN based EDXRF setup, and the flux spectra were obtained for iron ore sample. Finally, the flux spectra were broadened by Gaussian broaden parameters calculated by a new method proposed in this paper, and the broadened spectra were compared with measured energy spectra. Results: MC method can be used to simulate EDXRF measurement, and can correct the matrix effects among elements automatically. Peak intensities can be obtained accurately by using the proposed Gaussian broaden technique. Conclusions: This study provided a key technique for EDXRF to achieve advanced NSA technology. (authors)

  8. Stark broadening of Ca IV spectral lines of astrophysical interest

    Science.gov (United States)

    Alonso-Medina, A.; Colón, C.

    2014-12-01

    Ca IV emission lines are under the preview of Solar Ultraviolet Measurements of Emitted Radiation device aboard the Solar and Heliospheric Observatory. Also, lines of the Ca IV in planetary nebulae NGC 7027 were detected with the Short Wavelength Spectrometer on board the Infrared Space Observatory. These facts justify an attempt to provide new spectroscopic parameters of Ca IV. There are no theoretical or experimental Stark broadening data for Ca IV. Using the Griem semi-empirical approach and the COWAN code, we report in this paper calculated values of the Stark broadening parameters for 467 lines of Ca IV. They were calculated using a set of wavefunctions obtained by using Hartree-Fock relativistic calculations. These lines arising from 3s23p4ns (n = 4, 5), 3s23p44p, 3s23p4nd (n = 3, 4) configurations. Stark widths and shifts are presented for an electron density of 1017 cm-3 and temperatures T = 10 000, 20 000 and 50 200 K. As these data cannot be compared to others in the literature, we present an analysis of the different regularities of the values presented in this work.

  9. Nonlocal inhomogeneous broadening in plasmonic nanoparticle ensembles

    DEFF Research Database (Denmark)

    Tserkezis, Christos; Maack, Johan Rosenkrantz; Liu, Z.

    Nonclassical effects are increasingly more relevant in plasmonics as modern nanofabrication techniques rapidly approach the extreme nanoscale limits, for which departing from classical electrodynamics becomes important. One of the largest-scale necessary corrections towards this direction...... is to abandon the local response approximation (LRA) and take the nonlocal response of the metal into account, typically through the simple hydrodynamic Drude model (HDM), which predicts a sizedependent deviation of plasmon modes from the quasistatic (QS) limit. While this behaviour has been explored for simple...... metallic nanoparticles (NPs) or NP dimers, the possibility of inhomogeneous resonance broadening due to size variation in a large NP collection and the resulting spectral overlap of modes (as depicted in Fig. 1), has been so far overlooked. Here we study theoretically the effect of nonlocality on ensemble...

  10. Gamma-ray induced doppler broadening

    International Nuclear Information System (INIS)

    Robinson, S.J.

    1992-01-01

    The ultra high resolving power of the GAMS4 double-flat crystal spectrometer (M.S. Dewey et al Nucl. Instrum. Methods A 284 (1989) 151.) has been used to observe the Doppler broadening of gamma-rays emitted by nuclei recoiling at speeds as low as 10 -6 c. Such recoils may be induced by the previous emission of gamma-radiation following thermal neutron capture. If the population mechanism of an excited state is known (or can be approximated) and the slowing down mechanism can be modeled, then this technique can be used to extract the lifetime of excited nuclear states. The combination of this technique and the neutron capture reaction allows the study of states which cannot necessarily be accessed by other means. This has allowed the resolution of a number of long standing questions in low-spin nuclear structure. The basis of the technique is discussed and a number of examples given

  11. Phonon broadening in high entropy alloys

    Science.gov (United States)

    Körmann, Fritz; Ikeda, Yuji; Grabowski, Blazej; Sluiter, Marcel H. F.

    2017-09-01

    Refractory high entropy alloys feature outstanding properties making them a promising materials class for next-generation high-temperature applications. At high temperatures, materials properties are strongly affected by lattice vibrations (phonons). Phonons critically influence thermal stability, thermodynamic and elastic properties, as well as thermal conductivity. In contrast to perfect crystals and ordered alloys, the inherently present mass and force constant fluctuations in multi-component random alloys (high entropy alloys) can induce significant phonon scattering and broadening. Despite their importance, phonon scattering and broadening have so far only scarcely been investigated for high entropy alloys. We tackle this challenge from a theoretical perspective and employ ab initio calculations to systematically study the impact of force constant and mass fluctuations on the phonon spectral functions of 12 body-centered cubic random alloys, from binaries up to 5-component high entropy alloys, addressing the key question of how chemical complexity impacts phonons. We find that it is crucial to include both mass and force constant fluctuations. If one or the other is neglected, qualitatively wrong results can be obtained such as artificial phonon band gaps. We analyze how the results obtained for the phonons translate into thermodynamically integrated quantities, specifically the vibrational entropy. Changes in the vibrational entropy with increasing the number of elements can be as large as changes in the configurational entropy and are thus important for phase stability considerations. The set of studied alloys includes MoTa, MoTaNb, MoTaNbW, MoTaNbWV, VW, VWNb, VWTa, VWNbTa, VTaNbTi, VWNbTaTi, HfZrNb, HfMoTaTiZr.

  12. DIGE proteome analysis reveals suitability of ischemic cardiac in vitro model for studying cellular response to acute ischemia and regeneration.

    Directory of Open Access Journals (Sweden)

    Sina Haas

    Full Text Available Proteomic analysis of myocardial tissue from patient population is suited to yield insights into cellular and molecular mechanisms taking place in cardiovascular diseases. However, it has been limited by small sized biopsies and complicated by high variances between patients. Therefore, there is a high demand for suitable model systems with the capability to simulate ischemic and cardiotoxic effects in vitro, under defined conditions. In this context, we established an in vitro ischemia/reperfusion cardiac disease model based on the contractile HL-1 cell line. To identify pathways involved in the cellular alterations induced by ischemia and thereby defining disease-specific biomarkers and potential target structures for new drug candidates we used fluorescence 2D-difference gel electrophoresis. By comparing spot density changes in ischemic and reperfusion samples we detected several protein spots that were differentially abundant. Using MALDI-TOF/TOF-MS and ESI-MS the proteins were identified and subsequently grouped by functionality. Most prominent were changes in apoptosis signalling, cell structure and energy-metabolism. Alterations were confirmed by analysis of human biopsies from patients with ischemic cardiomyopathy.With the establishment of our in vitro disease model for ischemia injury target identification via proteomic research becomes independent from rare human material and will create new possibilities in cardiac research.

  13. Time-lapse analysis of potential cellular responsiveness to Johrei, a Japanese healing technique

    Directory of Open Access Journals (Sweden)

    Moore Dan

    2005-01-01

    Full Text Available Abstract Background Johrei is an alternative healing practice which involves the channeling of a purported universal healing energy to influence the health of another person. Despite little evidence to support the efficacy of such practices the use of such treatments is on the rise. Methods We assessed cultured human cancer cells for potential responsiveness to Johrei treatment from a short distance. Johrei treatment was delivered by practitioners who participated in teams of two, alternating every half hour for a total of four hours of treatment. The practitioners followed a defined set of mental procedures to minimize variability in mental states between experiments. An environmental chamber maintained optimal growth conditions for cells throughout the experiments. Computerized time-lapse microscopy allowed documentation of cancer cell proliferation and cell death before, during and after Johrei treatments. Results Comparing eight control experiments with eight Johrei intervention experiments, we found no evidence of a reproducible cellular response to Johrei treatment. Conclusion Cell death and proliferation rates of cultured human cancer cells do not appear responsive to Johrei treatment from a short distance.

  14. Analysis of effect on microdose of 10B nonuniform distribution in cellular

    International Nuclear Information System (INIS)

    Xie Qin; Geng Changran; Tang Xiaobin; Chen Da

    2012-01-01

    Boron neutron capture therapy (BNCT) is one of the effective way to treat malignant melanoma and head-neck cancer. The intercellular nonuniform distributions of 10 B in tumor cell impact the estimates of inactivation dose. The α-Li Version l.0 code was developed based on Monte-Carlo method to calculate the S values of cell induced by α and 7 Li particle which are the products of 10 B (n,a) 7 Li. The calculation included two types of cell size, eight kinds of energy of a particle and three kinds of source distributions. Differences between results of this code and an analytical algorithm of MIRD committee were within 1%. On this basis, a total of 3420 cases were calculated and analyzed with different kinds of nucleus radius, cell radius, and source launch position combination. Finally, cellular S values of 10 B (n,a) 7 Li calculated in this paper can be used to compute the excellent precision dose under 10 B compound nonuniform distribution in intercellular scale. (authors)

  15. Characteristic Analysis of Mixed Traffic Flow of Regular and Autonomous Vehicles Using Cellular Automata

    Directory of Open Access Journals (Sweden)

    Yangzexi Liu

    2017-01-01

    Full Text Available The technology of autonomous vehicles is expected to revolutionize the operation of road transport systems. The penetration rate of autonomous vehicles will be low at the early stage of their deployment. It is a challenge to explore the effects of autonomous vehicles and their penetration on heterogeneous traffic flow dynamics. This paper aims to investigate this issue. An improved cellular automaton was employed as the modeling platform for our study. In particular, two sets of rules for lane changing were designed to address mild and aggressive lane changing behavior. With extensive simulation studies, we obtained some promising results. First, the introduction of autonomous vehicles to road traffic could considerably improve traffic flow, particularly the road capacity and free-flow speed. And the level of improvement increases with the penetration rate. Second, the lane-changing frequency between neighboring lanes evolves with traffic density along a fundamental-diagram-like curve. Third, the impacts of autonomous vehicles on the collective traffic flow characteristics are mainly related to their smart maneuvers in lane changing and car following, and it seems that the car-following impact is more pronounced.

  16. Analysis of Architectural Building Design Influences on Fire Spread in Densely Urban Settlement using Cellular Automata

    Science.gov (United States)

    Tambunan, L.; Salamah, H.; Asriana, N.

    2017-03-01

    This study aims to determine the influence of architectural design on the risk of fire spread in densely urban settlement area. Cellular Automata (CA) is used to analyse the fire spread pattern, speed, and the extent of damage. Four cells represent buildings, streets, and fields characteristic in the simulated area, as well as their flammability level and fire spread capabilities. Two fire scenarios are used to model the spread of fire: (1) fire origin in a building with concrete and wood material majority, and (2) fire origin in building with wood material majority. Building shape, building distance, road width, and total area of wall openings are considered constant, while wind is ignored. The result shows that fire spread faster in the building area with wood majority than with concrete majority. Significant amount of combustible building material, absence of distance between buildings, narrow streets and limited fields are factors which influence fire spread speed and pattern as well as extent of damage when fire occurs in the densely urban settlement area.

  17. Dynamic changes in cellular infiltrates with repeated cutaneous vaccination: a histologic and immunophenotypic analysis

    Directory of Open Access Journals (Sweden)

    Schaefer Jochen T

    2010-08-01

    Full Text Available Abstract Background Melanoma vaccines have not been optimized. Adjuvants are added to activate dendritic cells (DCs and to induce a favourable immunologic milieu, however, little is known about their cellular and molecular effects in human skin. We hypothesized that a vaccine in incomplete Freund's adjuvant (IFA would increase dermal Th1 and Tc1-lymphocytes and mature DCs, but that repeated vaccination may increase regulatory cells. Methods During and after 6 weekly immunizations with a multipeptide vaccine, immunization sites were biopsied at weeks 0, 1, 3, 7, or 12. In 36 participants, we enumerated DCs and lymphocyte subsets by immunohistochemistry and characterized their location within skin compartments. Results Mature DCs aggregated with lymphocytes around superficial vessels, however, immature DCs were randomly distributed. Over time, there was no change in mature DCs. Increases in T and B-cells were noted. Th2 cells outnumbered Th1 lymphocytes after 1 vaccine 6.6:1. Eosinophils and FoxP3+ cells accumulated, especially after 3 vaccinations, the former cell population most abundantly in deeper layers. Conclusions A multipeptide/IFA vaccine may induce a Th2-dominant microenvironment, which is reversed with repeat vaccination. However, repeat vaccination may increase FoxP3+T-cells and eosinophils. These data suggest multiple opportunities to optimize vaccine regimens and potential endpoints for monitoring the effects of new adjuvants. Trail Registration ClinicalTrials.gov Identifier: NCT00705640

  18. Inference of Tumor Evolution during Chemotherapy by Computational Modeling and In Situ Analysis of Genetic and Phenotypic Cellular Diversity

    Directory of Open Access Journals (Sweden)

    Vanessa Almendro

    2014-02-01

    Full Text Available Cancer therapy exerts a strong selection pressure that shapes tumor evolution, yet our knowledge of how tumors change during treatment is limited. Here, we report the analysis of cellular heterogeneity for genetic and phenotypic features and their spatial distribution in breast tumors pre- and post-neoadjuvant chemotherapy. We found that intratumor genetic diversity was tumor-subtype specific, and it did not change during treatment in tumors with partial or no response. However, lower pretreatment genetic diversity was significantly associated with pathologic complete response. In contrast, phenotypic diversity was different between pre- and posttreatment samples. We also observed significant changes in the spatial distribution of cells with distinct genetic and phenotypic features. We used these experimental data to develop a stochastic computational model to infer tumor growth patterns and evolutionary dynamics. Our results highlight the importance of integrated analysis of genotypes and phenotypes of single cells in intact tissues to predict tumor evolution.

  19. Inference of tumor evolution during chemotherapy by computational modeling and in situ analysis of genetic and phenotypic cellular diversity

    International Nuclear Information System (INIS)

    Almendro, Vanessa; Cheng, Yu-Kang; Randles, Amanda; Itzkovitz, Shalev; Marusyk, Andriy; Ametller, Elisabet; Gonzalez-Farre, Xavier; Muñoz, Montse; Russnes, Hege G.; Helland, Åslaug; Rye, Inga H.; Borresen-Dale, Anne-Lise; Maruyama, Reo; Van Oudenaarden, Alexander; Dowsett, Mitchell; Jones, Robin L.; Reis-Filho, Jorge; Gascon, Pere; Gönen, Mithat; Michor, Franziska; Polyak, Kornelia

    2014-01-01

    Cancer therapy exerts a strong selection pressure that shapes tumor evolution, yet our knowledge of how tumors change during treatment is limited. Here, we report the analysis of cellular heterogeneity for genetic and phenotypic features and their spatial distribution in breast tumors pre- and post-neoadjuvant chemotherapy. We found that intratumor genetic diversity was tumor-subtype specific, and it did not change during treatment in tumors with partial or no response. However, lower pretreatment genetic diversity was significantly associated with pathologic complete response. In contrast, phenotypic diversity was different between pre- and post-treatment samples. We also observed significant changes in the spatial distribution of cells with distinct genetic and phenotypic features. We used these experimental data to develop a stochastic computational model to infer tumor growth patterns and evolutionary dynamics. Our results highlight the importance of integrated analysis of genotypes and phenotypes of single cells in intact tissues to predict tumor evolution

  20. Genetic and cellular analysis of cross-incompatibility in Zea mays.

    Science.gov (United States)

    Lu, Yongxian; Kermicle, Jerry L; Evans, Matthew M S

    2014-03-01

    Three genetic systems conferring cross-incompatibility have been described in Zea mays: Teosinte crossing barrier1-strong (Tcb1-s) found in teosinte, and Gametophyte factor1-strong (Ga1-s) and Ga2-s found in maize and teosinte. The reproductive barrier between maize and some weedy teosintes is controlled by the Tcb1-s locus. Multi-generation inheritance experiments on two independent Tcb1-s lineages show that the Tcb1-s barrier is unstable in some maize lines. Reciprocal crosses between Tcb1-s tester plants and three recombinants in the Tcb1-s mapping region demonstrate that the Tcb1-s haplotype contains separable male and female components. In vivo assays of the dynamics of pollen tube growth and pollen tube morphology during rejection of incompatible pollen in silks carrying the Tcb1-s, Ga1-s, or Ga2-s barriers showed that, in all three, pollen tube growth is slower than in compatible crosses at early stages and had ceased by 24 h after pollination. In all three crossing barrier systems, incompatible pollen tubes have clustered callose plugs in contrast to pollen tubes of compatible crosses. Incompatible pollen tubes growing in the Tcb1-s, Ga1-s, and Ga2-s silks have different morphologies: straight, curved, and kinked, respectively. The distinct morphologies suggest that these crossing barriers block incompatible pollen through different mechanisms. This study lays the foundation for cloning the Tcb1 genes and provides clues about the cellular mechanisms involved in pollen rejection in the Tcb1-s, Ga1-s, and Ga2-s crossing barriers.

  1. Giardiasis in mice: analysis of humoral and cellular immune responses to Giardia muris.

    Science.gov (United States)

    Anders, R F; Roberts-Thomson, I C; Mitchell, G F

    1982-01-01

    Humoral and cellular immune responses have been evaluated in two inbred strains of mice which differ markedly in their susceptibility to infection with Giardia muris. Serum IgG and IgA antibody levels and IgA levels in intestinal washes were determined by a solid-phase radioimmunoassay using G. muris antigen prepared by sonication of trophozoites, while cell-mediated immunity was assessed by a radiometric ear-assay for delayed-type hypersensitivity. Following infection of BALB/c mice (resistant) and C3H/He mice (susceptible), the IgG and IgA antibody levels in serum progressively increased over the period of study with C3H/He mice having significantly higher titres of IgA antibodies than BALB/c late in the infection. Systemic immunization with G. muris trophozoites resulted in high titres of IgG antibodies in the serum. IgA antibodies were detected in intestinal washes 2 weeks after infection with a subsequent fall in levels in BALB/c mice but a progressive increase levels in C3H/He mice. Prior immunization resulted in IgA antibodies being detected earlier in the intestinal washings after a challenge infection. Delayed-type hypersensitivity to G. muris antigens could not be detected during an infection but a positive response was elicited following antigen priming in mice pretreated with cyclophosphamide. The immune responses evaluated in this study were assessed using a whole G. muris trophozoite sonicate and variations in the quantitative aspects of the responses did not account for observed differences in the course of infection in the two strains of mice.

  2. Robust synchronization analysis in nonlinear stochastic cellular networks with time-varying delays, intracellular perturbations and intercellular noise.

    Science.gov (United States)

    Chen, Po-Wei; Chen, Bor-Sen

    2011-08-01

    Naturally, a cellular network consisted of a large amount of interacting cells is complex. These cells have to be synchronized in order to emerge their phenomena for some biological purposes. However, the inherently stochastic intra and intercellular interactions are noisy and delayed from biochemical processes. In this study, a robust synchronization scheme is proposed for a nonlinear stochastic time-delay coupled cellular network (TdCCN) in spite of the time-varying process delay and intracellular parameter perturbations. Furthermore, a nonlinear stochastic noise filtering ability is also investigated for this synchronized TdCCN against stochastic intercellular and environmental disturbances. Since it is very difficult to solve a robust synchronization problem with the Hamilton-Jacobi inequality (HJI) matrix, a linear matrix inequality (LMI) is employed to solve this problem via the help of a global linearization method. Through this robust synchronization analysis, we can gain a more systemic insight into not only the robust synchronizability but also the noise filtering ability of TdCCN under time-varying process delays, intracellular perturbations and intercellular disturbances. The measures of robustness and noise filtering ability of a synchronized TdCCN have potential application to the designs of neuron transmitters, on-time mass production of biochemical molecules, and synthetic biology. Finally, a benchmark of robust synchronization design in Escherichia coli repressilators is given to confirm the effectiveness of the proposed methods. Copyright © 2011 Elsevier Inc. All rights reserved.

  3. Analysis of tanshinone IIA induced cellular apoptosis in leukemia cells by genome-wide expression profiling

    Directory of Open Access Journals (Sweden)

    Liu Chang

    2012-01-01

    Full Text Available Abstract Background Tanshinone IIA (Tan IIA is a diterpene quinone extracted from the root of Salvia miltiorrhiza, a Chinese traditional herb. Although previous studies have reported the anti-tumor effects of Tan IIA on various human cancer cells, the underlying mechanisms are not clear. The current study was undertaken to investigate the molecular mechanisms of Tan IIA's apoptotic effects on leukemia cells in vitro. Methods The cytotoxicity of Tan IIA on different types of leukemia cell lines was evaluated by the 3-[4,5-dimethylthiazol-2,5]-diphenyl tetrazolium bromide (MTT assay on cells treated without or with Tan IIA at different concentrations for different time periods. Cellular apoptosis progression with and without Tan IIA treatment was analyzed by Annexin V and Caspase 3 assays. Gene expression profiling was used to identify the genes regulated after Tan IIA treatment and those differentially expressed among the five cell lines. Confirmation of these expression regulations was carried out using real-time quantitative PCR and ELISA. The antagonizing effect of a PXR inhibitor L-SFN on Tan IIA treatment was tested using Colony Forming Unit Assay. Results Our results revealed that Tan IIA had different cytotoxic activities on five types of leukemia cells, with the highest toxicity on U-937 cells. Tan IIA inhibited the growth of U-937 cells in a time- and dose-dependent manner. Annexin V and Caspase-3 assays showed that Tan IIA induced apoptosis in U-937 cells. Using gene expression profiling, 366 genes were found to be significantly regulated after Tan IIA treatment and differentially expressed among the five cell lines. Among these genes, CCL2 was highly expressed in untreated U-937 cells and down-regulated significantly after Tan IIA treatment in a dose-dependent manner. RT-qPCR analyses validated the expression regulation of 80% of genes. Addition of L- sulforaphane (L-SFN, an inhibitor of Pregnane × receptor (PXR significantly

  4. Error performance analysis in K-tier uplink cellular networks using a stochastic geometric approach

    KAUST Repository

    Afify, Laila H.; Elsawy, Hesham; Al-Naffouri, Tareq Y.; Alouini, Mohamed-Slim

    2015-01-01

    -in-Distribution approach that utilizes stochastic geometric tools to account for the network geometry in the performance characterization. Different from the other stochastic geometry models adopted in the literature, the developed analysis accounts for important

  5. Control, responses and modularity of cellular regulatory networks: a contol analysis perspective.

    NARCIS (Netherlands)

    Bruggeman, F.J.; Snoep, J.L.; Westerhoff, H.V.

    2008-01-01

    Cells adapt to changes in environmental conditions through the concerted action of signalling, gene expression and metabolic subsystems. The authors will discuss a theoretical framework addressing such integrated systems. This 'hierarchical analysis' was first developed as an extension to a

  6. Urine storage under refrigeration preserves the sample in chemical, cellularity and bacteriuria analysis of ACS

    OpenAIRE

    Karen Cristina Barcellos Ribeiro; Bruno Rotondo Levenhagem Serabion; Eduardo Lima Nolasco; Chislene Pereira Vanelli; Harleson Lopes de Mesquita; José Otávio do Amaral Corrêa

    2013-01-01

    INTRODUCTION: The analysis of urine abnormal constituents and sediment (ACS) comprises tests of great diagnostic and prognostic value in clinical practice. When the analysis of ACS cannot be performed within two hours after collection, the sample must be preserved in order to avoid pre-analytical interferences. Refrigeration is the most applied technique due to its cost effectiveness. Moreover, it presents fewer inconveniences when compared to chemical preservation. However, changes in ACS ma...

  7. Micro electrochemical sensors and PCR systems: cellular and molecular tools for wine yeast analysis

    OpenAIRE

    Ress, Cristina

    2010-01-01

    Nowadays, exciting bioanalytical microsystems are currently receiving increasing attention in biology since they can comply with the considerable demand for reliable, sensitive and low-cost analysis tools. Small reagents volumes, low power consumption, portability, fast analysis, high throughput and systems integration are the key aspects that make these systems more and more appealing within both the academic and industrial communities. In the last years, many microdevices were developed for...

  8. Leveraging biology interest to broaden participation in the geosciences

    Science.gov (United States)

    Perin, S.; Conner, L.; Oxtoby, L.

    2017-12-01

    It has been well documented that female participation in the geoscience workforce is low. By contrast, the biology workforce has largely reached gender parity. These trends are rooted in patterns of interest among youth. Specifically, girls tend to like biology and value social and societal connections to science (Brotman & Moore 2008). Our NSF-funded project, "BRIGHT Girls," offers two-week summer academies to high school-aged girls, in which the connections between the geosciences and biology are made explicit. We are conducting qualitative research to trace the girls' identity work during this intervention. Using team-based video interaction analysis, we are finding that the fabric of the academy allows girls to "try on" new possible selves in science. Our results imply that real-world, interdisciplinary programs that include opportunities for agency and authentic science practice may be a fruitful approach for broadening participation in the geosciences.

  9. Co(III)EDTA as extra-cellular marker in μPIXE-analysis of rat cardiomyocytes

    International Nuclear Information System (INIS)

    Quaedackers, J.A.; Queens, R.M.G.J.; Mutsaers, P.H.A.; Voigt, M.J.A. de; Vusse, G.J. van der

    1998-01-01

    In previous studies no clear difference was found between the intra- and extra-cellular compartment in nuclear microprobe elemental distribution maps of freeze-dried cryo sections of heart tissue. Probably due to artefacts during the preparation of these samples, the intra-cellular and the extra-cellular content of elements are mixed up. In this article a method, using NaCo(III)EDTA as an extra-cellular marker, was applied to deconvolute the total ion content in an extra- and intra-cellular contribution. This method was both applied to normoxic heart tissue and low-flow ischemic heart tissue. Intra-cellular ion concentrations calculated from the corrected ion contents of the normoxic tissue agrees well with literature values. Moreover a clear elevation of the intra-cellular sodium and chlorine concentration was found in low-flow ischemic tissue. (orig.)

  10. Resonance broadening in an intense light field

    International Nuclear Information System (INIS)

    Andreev, S.P.; Lisitsa, V.S.

    1977-01-01

    Collisions of identical atoms in a strong resonance radiation field E 0 cosωt, for which the atomic oscillation period is comparable to the collision time of the atoms, are considered. The problem is treated in terms of the simplest two-level atomic model. The problem of light absorption in such collisions is reduced to the problem of inelastic transitions in a three-level compound system of two atoms and an electromagnetic field. Corresponding probabilities and inelastic scattering integral cross sections for transitions between energy levels in such a system are calculated for two extreme cases- the impact (rapid collisions) and the static one (slow collisions). In the general case the cross sections depend nonlinearly on Esub(0). For small Esub(0) as compared to a certain critical Esub(0)* the results are similar to those of the well-known linear theory of resonance broadening. For Esub(0)>>Esub(0)* the absorption in the line wing is found to decrease (with increase of Esub(0)-the medium becomes more ''transparent''). The kinetics of light absorption in the medium of identical atoms with constant absorption capacity is analysed

  11. Virus-Specific T Cells: Broadening Applicability.

    Science.gov (United States)

    Barrett, A John; Prockop, Susan; Bollard, Catherine M

    2018-01-01

    Virus infection remains an appreciable cause of morbidity and mortality after hematopoietic stem cell transplantation (HSCT). Although pharmacotherapy and/or antibody therapy may help prevent or treat viral disease, these drugs are expensive, toxic, and often ineffective due to primary or secondary resistance. Further, effective treatments are limited for many infections (eg, adenovirus, BK virus), which are increasingly detected after alternative donor transplants. These deficiencies in conventional therapeutics have increased interest in an immunotherapeutic approach to viral disorders, leading to adoptive transfer of virus-specific cytotoxic T lymphocytes (VSTs), which can rapidly reconstitute antiviral immunity post-transplantation without causing graft-versus-host disease. This review will explore how the VST field has improved outcomes for many patients with life-threatening viral infections after HSCT, and how to broaden applicability beyond the "patient-specific" products, as well as extending to other viral diseases even outside the context of HSCT. Copyright © 2017 The American Society for Blood and Marrow Transplantation. All rights reserved.

  12. Single-cell analysis by ICP-MS/MS as a fast tool for cellular bioavailability studies of arsenite.

    Science.gov (United States)

    Meyer, S; López-Serrano, A; Mitze, H; Jakubowski, N; Schwerdtle, T

    2018-01-24

    Single-cell inductively coupled plasma mass spectrometry (SC-ICP-MS) has become a powerful and fast tool to evaluate the elemental composition at a single-cell level. In this study, the cellular bioavailability of arsenite (incubation of 25 and 50 μM for 0-48 h) has been successfully assessed by SC-ICP-MS/MS for the first time directly after re-suspending the cells in water. This procedure avoids the normally arising cell membrane permeabilization caused by cell fixation methods (e.g. methanol fixation). The reliability and feasibility of this SC-ICP-MS/MS approach with a limit of detection of 0.35 fg per cell was validated by conventional bulk ICP-MS/MS analysis after cell digestion and parallel measurement of sulfur and phosphorus.

  13. Self-pulsing and chaos in inhomogeneously broadened single mode lasers

    Energy Technology Data Exchange (ETDEWEB)

    Graham, R; Cho, Y

    1983-08-01

    A four-dimensional model and a six-dimensional model describing the self-pulsing instabilities and chaotic dynamics of inhomogeneously broadened single-mode lasers are derived as the first two steps of an infinite hierarchy of approximations increasing in accuracy and complexity. The results of a linear stability analysis of the time-independent states and some numerical solutions are given to show the various types of dynamic behavior which can occur in these models. The dynamic behavior is found to be much more complex than in the homogeneously broadened case and is obtained under physically more realistic conditions. 10 references.

  14. Lipase genes in Mucor circinelloides: identification, sub-cellular location, phylogenetic analysis and expression profiling during growth and lipid accumulation.

    Science.gov (United States)

    Zan, Xinyi; Tang, Xin; Chu, Linfang; Zhao, Lina; Chen, Haiqin; Chen, Yong Q; Chen, Wei; Song, Yuanda

    2016-10-01

    Lipases or triacylglycerol hydrolases are widely spread in nature and are particularly common in the microbial world. The filamentous fungus Mucor circinelloides is a potential lipase producer, as it grows well in triacylglycerol-contained culture media. So far only one lipase from M. circinelloides has been characterized, while the majority of lipases remain unknown in this fungus. In the present study, 47 potential lipase genes in M. circinelloides WJ11 and 30 potential lipase genes in M. circinelloides CBS 277.49 were identified by extensive bioinformatics analysis. An overview of these lipases is presented, including several characteristics, sub-cellular location, phylogenetic analysis and expression profiling of the lipase genes during growth and lipid accumulation. All of these proteins contained the consensus sequence for a classical lipase (GXSXG motif) and were divided into four types including α/β-hydrolase_1, α/β-hydrolase_3, class_3 and GDSL lipase (GDSL) based on gene annotations. Phylogenetic analyses revealed that class_3 family and α/β-hydrolase_3 family were the conserved lipase family in M. circinelloides. Additionally, some lipases also contained a typical acyltransferase motif of H-(X) 4-D, and these lipases may play a dual role in lipid metabolism, catalyzing both lipid hydrolysis and transacylation reactions. The differential expression of all lipase genes were confirmed by quantitative real-time PCR, and the expression profiling were analyzed to predict the possible biological roles of these lipase genes in lipid metabolism in M. circinelloides. We preliminarily hypothesized that lipases may be involved in triacylglycerol degradation, phospholipid synthesis and beta-oxidation. Moreover, the results of sub-cellular localization, the presence of signal peptide and transcriptional analyses of lipase genes indicated that four lipase in WJ11 most likely belong to extracellular lipases with a signal peptide. These findings provide a platform

  15. Selective proteomic analysis of antibiotic-tolerant cellular subpopulations in pseudomonas aeruginosa biofilms

    DEFF Research Database (Denmark)

    Babin, Brett M.; Atangcho, Lydia; van Eldijk, Mark B.

    2017-01-01

    involved in central carbon metabolism. We differentiated the immediate proteomic response, characterized by an increase in flagellar motility, from the long-term adaptive strategy, which included the upregulation of purine synthesis. This targeted, selective analysis of a bacterial subpopulation...... amino acid tagging (BONCAT) method to enable selective proteomic analysis of a Pseudomonas aeruginosa biofilm subpopulation. Through controlled expression of a mutant methionyl-tRNA synthetase, we targeted BONCAT labeling to cells in the regions of biofilm microcolonies that showed increased tolerance...... demonstrates how the study of proteome dynamics can enhance our understanding of biofilm heterogeneity and antibiotic tolerance. IMPORTANCE Bacterial growth is frequently characterized by behavioral heterogeneity at the single-cell level. Heterogeneity is especially evident in the physiology of biofilms...

  16. A gene pathway analysis highlights the role of cellular adhesion molecules in multiple sclerosis susceptibility

    DEFF Research Database (Denmark)

    Damotte, V; Guillot-Noel, L; Patsopoulos, N A

    2014-01-01

    adhesion molecule (CAMs) biological pathway using Cytoscape software. This network is a strong candidate, as it is involved in the crossing of the blood-brain barrier by the T cells, an early event in MS pathophysiology, and is used as an efficient therapeutic target. We drew up a list of 76 genes...... in interaction with other genes as a group. Pathway analysis is an alternative way to highlight such group of genes. Using SNP association P-values from eight multiple sclerosis (MS) GWAS data sets, we performed a candidate pathway analysis for MS susceptibility by considering genes interacting in the cell...... belonging to the CAM network. We highlighted 64 networks enriched with CAM genes with low P-values. Filtering by a percentage of CAM genes up to 50% and rejecting enriched signals mainly driven by transcription factors, we highlighted five networks associated with MS susceptibility. One of them, constituted...

  17. Cellular metabolism

    International Nuclear Information System (INIS)

    Hildebrand, C.E.; Walters, R.A.

    1977-01-01

    Progress is reported on the following research projects: chromatin structure; the use of circular synthetic polydeoxynucleotides as substrates for the study of DNA repair enzymes; human cellular kinetic response following exposure to DNA-interactive compounds; histone phosphorylation and chromatin structure in cell proliferation; photoaddition products induced in chromatin by uv light; pollutants and genetic information transfer; altered RNA metabolism as a function of cadmium accumulation and intracellular distribution in cultured cells; and thymidylate chromophore destruction by water free radicals

  18. Cellular Lipid Extraction for Targeted Stable Isotope Dilution Liquid Chromatography-Mass Spectrometry Analysis

    Science.gov (United States)

    Gelhaus, Stacy L.; Mesaros, A. Clementina; Blair, Ian A.

    2011-01-01

    The metabolism of fatty acids, such as arachidonic acid (AA) and linoleic acid (LA), results in the formation of oxidized bioactive lipids, including numerous stereoisomers1,2. These metabolites can be formed from free or esterified fatty acids. Many of these oxidized metabolites have biological activity and have been implicated in various diseases including cardiovascular and neurodegenerative diseases, asthma, and cancer3-7. Oxidized bioactive lipids can be formed enzymatically or by reactive oxygen species (ROS). Enzymes that metabolize fatty acids include cyclooxygenase (COX), lipoxygenase (LO), and cytochromes P450 (CYPs)1,8. Enzymatic metabolism results in enantioselective formation whereas ROS oxidation results in the racemic formation of products. While this protocol focuses primarily on the analysis of AA- and some LA-derived bioactive metabolites; it could be easily applied to metabolites of other fatty acids. Bioactive lipids are extracted from cell lysate or media using liquid-liquid (l-l) extraction. At the beginning of the l-l extraction process, stable isotope internal standards are added to account for errors during sample preparation. Stable isotope dilution (SID) also accounts for any differences, such as ion suppression, that metabolites may experience during the mass spectrometry (MS) analysis9. After the extraction, derivatization with an electron capture (EC) reagent, pentafluorylbenzyl bromide (PFB) is employed to increase detection sensitivity10,11. Multiple reaction monitoring (MRM) is used to increase the selectivity of the MS analysis. Before MS analysis, lipids are separated using chiral normal phase high performance liquid chromatography (HPLC). The HPLC conditions are optimized to separate the enantiomers and various stereoisomers of the monitored lipids12. This specific LC-MS method monitors prostaglandins (PGs), isoprostanes (isoPs), hydroxyeicosatetraenoic acids (HETEs), hydroxyoctadecadienoic acids (HODEs), oxoeicosatetraenoic

  19. Quantitative Analysis of Cellular Proteome Alterations in CDV-Infected Mink Lung Epithelial Cells

    Directory of Open Access Journals (Sweden)

    Mingwei Tong

    2017-12-01

    Full Text Available Canine distemper virus (CDV, a paramyxovirus, causes a severe highly contagious lethal disease in carnivores, such as mink. Mink lung epithelial cells (Mv.1.Lu cells are sensitive to CDV infection and are homologous to the natural host system of mink. The current study analyzed the response of Mv.1.Lu cells to CDV infection by iTRAQ combined with LC–MS/MS. In total, 151 and 369 differentially expressed proteins (DEPs were markedly up-regulated or down-regulated, respectively. Thirteen DEPs were validated via real-time RT-PCR or western blot analysis. Network and KEGG pathway analyses revealed several regulated proteins associated with the NF-κB signaling pathway. Further validation was performed by western blot analysis and immunofluorescence assay, which demonstrated that different CDV strains induced NF-κB P65 phosphorylation and nuclear translocation. Moreover, the results provided interesting information that some identified DEPs possibly associated with the pathogenesis and the immune response upon CDV infection. This study is the first overview of the responses to CDV infection in Mv.1.Lu cells, and the findings will help to analyze further aspects of the molecular mechanisms involved in viral pathogenesis and the immune responses upon CDV infection.

  20. High resolution respirometry analysis of polyethylenimine-mediated mitochondrial energy crisis and cellular stress

    DEFF Research Database (Denmark)

    Hall, Arnaldur; Larsen, Anna Karina; Parhamifar, Ladan

    2013-01-01

    and spectrophotometry analysis of cytochrome c oxidase activity we were able to identify complex IV (cytochrome c oxidase) as a likely specific site of PEI mediated inhibition within the electron transport system. Unraveling the mechanisms of PEI-mediated mitochondrial energy crisis is central for combinatorial design...... of PEI-mediated plasma membrane damage and subsequent ATP leakage to the extracellular medium. Studies with freshly isolated mouse liver mitochondria corroborated with bioenergetic findings and demonstrated parallel polycation concentration- and time-dependent changes in state 2 and state 4o oxygen flux...... as well as lowered ADP phosphorylation (state 3) and mitochondrial ATP synthesis. Polycation-mediated reduction of electron transport system activity was further demonstrated in 'broken mitochondria' (freeze-thawed mitochondrial preparations). Moreover, by using both high-resolution respirometry...

  1. An Image Analysis Method for the Precise Selection and Quantitation of Fluorescently Labeled Cellular Constituents

    Science.gov (United States)

    Agley, Chibeza C.; Velloso, Cristiana P.; Lazarus, Norman R.

    2012-01-01

    The accurate measurement of the morphological characteristics of cells with nonuniform conformations presents difficulties. We report here a straightforward method using immunofluorescent staining and the commercially available imaging program Adobe Photoshop, which allows objective and precise information to be gathered on irregularly shaped cells. We have applied this measurement technique to the analysis of human muscle cells and their immunologically marked intracellular constituents, as these cells are prone to adopting a highly branched phenotype in culture. Use of this method can be used to overcome many of the long-standing limitations of conventional approaches for quantifying muscle cell size in vitro. In addition, wider applications of Photoshop as a quantitative and semiquantitative tool in immunocytochemistry are explored. PMID:22511600

  2. Structural analysis of cellular blocks for a prestressed cast iron reactor pressure vessel

    International Nuclear Information System (INIS)

    Thomas, R.G.; Head, J.L.

    1979-01-01

    The cast segments from which the prestressed cast iron nuclear reactor pressure vessel may be constructed are not readily amenable to detailed three-dimensional finite element analysis because their complex internal web structure requires a very large number of elements if reasonable aspect ratios are to be retained. A technique has been developed of modelling these blocks using plate bending elements from the ASKA code. By this means it has been possible to study in detail several designs of casting and to identify favourable features. The results of these studies, and others in which assessments are made of the sensitivity of the structure to prestressing load changes and machining errors, are reported. (orig.)

  3. Investigation of cellular signalling responses to non-ionising radiation in melanocytes by microarray analysis

    International Nuclear Information System (INIS)

    Boyle, G.M.; Pedley, J.; Martyn, A.C.; Fraser, L.M.; Banducci, K.J.; Parsons, P.G.; Breit, S.N.

    2003-01-01

    Melanoma is a highly aggressive cancer resulting from the abnormal proliferation and spread of specialised pigment cells in the skin, known as melanocytes. Extensive epidemiological and molecular evidence suggests that a major risk factor for melanoma formation is exposure to non-ionising radiation in the form of solar ultra-violet (UV) light. However, the exact role of solar UV in the development of melanoma is unclear. To elucidate the molecular events that occur in melanocytes following solar UV exposure and determine how they lead to melanoma development, cDNA microarray analysis was used to analyse the gene expression profile of normal melanocytes, melanocytes exposed to simulated solar UV and melanoma cells. The development of cDNA microarray technology has allowed gene expression profiling at the mRNA level to be conducted for many thousands of genes simultaneously by hybridising an array of known sequences with labelled cDNA reverse transcribed form the sample RNA. Gene expression analysis was performed for over 13,000 genes. More than 500 genes were identified as differentially expressed in melanocytes following a single UV exposure, although overall there was a general suppression of transcription. Genes that were up-regulated included oncogenes and cytoskeletal genes; in contrast, genes encoding protein tyrosine kinases and apoptosis effectors were down-regulated. Many of the genes identified as being differentially expressed represent novel UV-regulated targets. Repeated exposure to solar UV resulted in the elevation in expression of a novel member of the transforming growth factor-b (TGF-b) superfamily, the Macrophage Inhibitory Cytokine-1 (MIC-1). Our results have shown that MIC-1 is up-regulated by solar UV in melanocytes, and is highly expressed (>3 fold) in a number of metastatic melanoma cell lines (31/61) in comparison to primary melanocytes. Furthermore functional, dimerised MIC-1 was found to be secreted by melanocytes, and secreted levels were

  4. Microarray analysis identifies a common set of cellular genes modulated by different HCV replicon clones

    Directory of Open Access Journals (Sweden)

    Gerosolimo Germano

    2008-06-01

    Full Text Available Abstract Background Hepatitis C virus (HCV RNA synthesis and protein expression affect cell homeostasis by modulation of gene expression. The impact of HCV replication on global cell transcription has not been fully evaluated. Thus, we analysed the expression profiles of different clones of human hepatoma-derived Huh-7 cells carrying a self-replicating HCV RNA which express all viral proteins (HCV replicon system. Results First, we compared the expression profile of HCV replicon clone 21-5 with both the Huh-7 parental cells and the 21-5 cured (21-5c cells. In these latter, the HCV RNA has been eliminated by IFN-α treatment. To confirm data, we also analyzed microarray results from both the 21-5 and two other HCV replicon clones, 22-6 and 21-7, compared to the Huh-7 cells. The study was carried out by using the Applied Biosystems (AB Human Genome Survey Microarray v1.0 which provides 31,700 probes that correspond to 27,868 human genes. Microarray analysis revealed a specific transcriptional program induced by HCV in replicon cells respect to both IFN-α-cured and Huh-7 cells. From the original datasets of differentially expressed genes, we selected by Venn diagrams a final list of 38 genes modulated by HCV in all clones. Most of the 38 genes have never been described before and showed high fold-change associated with significant p-value, strongly supporting data reliability. Classification of the 38 genes by Panther System identified functional categories that were significantly enriched in this gene set, such as histones and ribosomal proteins as well as extracellular matrix and intracellular protein traffic. The dataset also included new genes involved in lipid metabolism, extracellular matrix and cytoskeletal network, which may be critical for HCV replication and pathogenesis. Conclusion Our data provide a comprehensive analysis of alterations in gene expression induced by HCV replication and reveal modulation of new genes potentially useful

  5. Studies on cellular distribution of elements in human hepatocellular carcinoma samples by molecular activation analysis

    International Nuclear Information System (INIS)

    Deng Guilong; Chen Chunying; Zhang Peiqun; Zhao Jiujiang; Chai Zhifang

    2005-01-01

    The distribution patterns of 17 elements in the subcellular fractions of nuclei, mitochondria, lysosome, microsome and cytosol of human hepatocellular carcinoma (HCC) and normal liver samples were investigated by using molecular activation analysis (MAA) and differential centrifugation. Their significant difference was checked by the Studient's t-test. These elements exhibit inhomogeneous distributions in each subcellular fraction. Some elements have no significant difference between hepatocellular carcinoma and normal liver samples. However, the concentrations of Br, Ca, Cd and Cs are significantly higher in each component of hepatocarcinoma than in normal liver. The content of Fe in microsome of HCC is significantly lower, almost half of normal liver samples, but higher in other subcellular fractions than in those of normal tissues. The rare earth elements of La and Ce have the patterns similar to Fe. The concentrations of Sb and Zn in nuclei of HCC are obviously lower (P<0.05, P<0.05). The contents of K and Na are higher in cytosol of HCC (P<0.05). The distributions of Ba and Rb show no significant difference between two groups. The relationships of Fe, Cd and K with HCC were also discussed. The levels of some elements in subcellular fractions of tumor were quite different from those of normal liver, which suggested that trace elements might play important roles in the occurrence and development of hepatocellular carcinoma. (authors)

  6. High repeatability from 3D experimental platform for quantitative analysis of cellular branch pattern formations.

    Science.gov (United States)

    Hagiwara, Masaya; Nobata, Rina; Kawahara, Tomohiro

    2018-04-24

    Three-dimensional (3D) cell and tissue cultures more closely mimic biological environments than two-dimensional (2D) cultures and are therefore highly desirable in culture experiments. However, 3D cultures often fail to yield repeatable experimental results because of variation in the initial culture conditions, such as cell density and distribution in the extracellular matrix, and therefore reducing such variation is a paramount concern. Here, we present a 3D culture platform that demonstrates highly repeatable experimental results, obtained by controlling the initial cell cluster shape in the gel cube culture device. A micro-mould with the desired shape was fabricated by photolithography or machining, creating a 3D pocket in the extracellular matrix contained in the device. Highly concentrated human bronchial epithelial cells were then injected in the pocket so that the cell cluster shape matched the fabricated mould shape. Subsequently, the cubic device supplied multi-directional scanning, enabling high-resolution capture of the whole tissue structure with only a low-magnification lens. The proposed device significantly improved the repeatability of the developed branch pattern, and multi-directional scanning enabled quantitative analysis of the developed branch pattern formations. A mathematical simulation was also conducted to reveal the mechanisms of branch pattern formation. The proposed platform offers the potential to accelerate any research field that conducts 3D culture experiments, including tissue regeneration and drug development.

  7. Studies on cellular distribution of elements in human hepatocellular carcinoma samples by molecular activation analysis

    Energy Technology Data Exchange (ETDEWEB)

    Guilong, Deng [Chinese Academy of Sciences, Beijing (China). Inst. of High Energy Physics, Key Laboratory of Nuclear Analytical Techniques; Department of General Surgery, the Second Affiliated Hospital, School of Medicine, Zhejiang Univ., Hangzhou (China); Chunying, Chen; Peiqun, Zhang; Jiujiang, Zhao; Zhifang, Chai [Chinese Academy of Sciences, Beijing (China). Inst. of High Energy Physics, Key Laboratory of Nuclear Analytical Techniques; Yingbin, Liu; Jianwei, Wang; Bin, Xu; Shuyou, Peng [Department of General Surgery, the Second Affiliated Hospital, School of Medicine, Zhejiang Univ., Hangzhou (China)

    2005-07-15

    The distribution patterns of 17 elements in the subcellular fractions of nuclei, mitochondria, lysosome, microsome and cytosol of human hepatocellular carcinoma (HCC) and normal liver samples were investigated by using molecular activation analysis (MAA) and differential centrifugation. Their significant difference was checked by the Studient's t-test. These elements exhibit inhomogeneous distributions in each subcellular fraction. Some elements have no significant difference between hepatocellular carcinoma and normal liver samples. However, the concentrations of Br, Ca, Cd and Cs are significantly higher in each component of hepatocarcinoma than in normal liver. The content of Fe in microsome of HCC is significantly lower, almost half of normal liver samples, but higher in other subcellular fractions than in those of normal tissues. The rare earth elements of La and Ce have the patterns similar to Fe. The concentrations of Sb and Zn in nuclei of HCC are obviously lower (P<0.05, P<0.05). The contents of K and Na are higher in cytosol of HCC (P<0.05). The distributions of Ba and Rb show no significant difference between two groups. The relationships of Fe, Cd and K with HCC were also discussed. The levels of some elements in subcellular fractions of tumor were quite different from those of normal liver, which suggested that trace elements might play important roles in the occurrence and development of hepatocellular carcinoma. (authors)

  8. Identification of EBP50 as a Specific Biomarker for Carcinogens Via the Analysis of Mouse Lymphoma Cellular Proteome

    Science.gov (United States)

    Lee, Yoen Jung; Choi, In-Kwon; Sheen, Yhun Yhong; Park, Sue Nie; Kwon, Ho Jeong

    2012-01-01

    To identify specific biomarkers generated upon exposure of L5178Y mouse lymphoma cells to carcinogens, 2-DE and MALDI-TOF MS analysis were conducted using the cellular proteome of L5178Y cells that had been treated with the known carcinogens, 1,2-dibromoethane and O-nitrotoluene and the noncarcinogens, emodin and D-mannitol. Eight protein spots that showed a greater than 1.5-fold increase or decrease in intensity following carcinogen treatment compared with treatment with noncarcinogens were selected. Of the identified proteins, we focused on the candidate biomarker ERM-binding phosphoprotein 50 (EBP50), the expression of which was specifically increased in response to treatment with the carcinogens. The expression level of EBP50 was determined by western analysis using polyclonal rabbit anti-EBP50 antibody. Further, the expression level of EBP50 was increased in cells treated with seven additional carcinogens, verifying that EBP50 could serve as a specific biomarker for carcinogens. PMID:22434383

  9. Toward Efficient Design of Reversible Logic Gates in Quantum-Dot Cellular Automata with Power Dissipation Analysis

    Science.gov (United States)

    Sasamal, Trailokya Nath; Singh, Ashutosh Kumar; Ghanekar, Umesh

    2018-04-01

    Nanotechnologies, remarkably Quantum-dot Cellular Automata (QCA), offer an attractive perspective for future computing technologies. In this paper, QCA is investigated as an implementation method for designing area and power efficient reversible logic gates. The proposed designs achieve superior performance by incorporating a compact 2-input XOR gate. The proposed design for Feynman, Toffoli, and Fredkin gates demonstrates 28.12, 24.4, and 7% reduction in cell count and utilizes 46, 24.4, and 7.6% less area, respectively over previous best designs. Regarding the cell count (area cover) that of the proposed Peres gate and Double Feynman gate are 44.32% (21.5%) and 12% (25%), respectively less than the most compact previous designs. Further, the delay of Fredkin and Toffoli gates is 0.75 clock cycles, which is equal to the delay of the previous best designs. While the Feynman and Double Feynman gates achieve a delay of 0.5 clock cycles, equal to the least delay previous one. Energy analysis confirms that the average energy dissipation of the developed Feynman, Toffoli, and Fredkin gates is 30.80, 18.08, and 4.3% (for 1.0 E k energy level), respectively less compared to best reported designs. This emphasizes the beneficial role of using proposed reversible gates to design complex and power efficient QCA circuits. The QCADesigner tool is used to validate the layout of the proposed designs, and the QCAPro tool is used to evaluate the energy dissipation.

  10. SOLAR WIND STRAHL BROADENING BY SELF-GENERATED PLASMA WAVES

    Energy Technology Data Exchange (ETDEWEB)

    Pavan, J.; Gaelzer, R. [UFPEL, Pelotas (Brazil); Vinas, A. F. [NASA GSFC, Greenbelt, MD 20771 (United States); Yoon, P. H. [IPST, UMD, College Park, MD (United States); Ziebell, L. F., E-mail: joel.pavan@ufpel.edu.br, E-mail: rudi@ufpel.edu.br, E-mail: adolfo.vinas@nasa.gov, E-mail: yoonp@umd.edu, E-mail: luiz.ziebell@ufrgs.br [UFRGS, Porto Alegre (Brazil)

    2013-06-01

    This Letter reports on the results of numerical simulations which may provide a possible explanation for the strahl broadening during quiet solar conditions. The relevant processes involved in the broadening are due to kinetic quasi-linear wave-particle interaction. Making use of static analytical electron distribution in an inhomogeneous field, it is found that self-generated electrostatic waves at the plasma frequency, i.e., Langmuir waves, are capable of scattering the strahl component, resulting in energy and pitch-angle diffusion that broadens its velocity distribution significantly. The present theoretical results provide an alternative or complementary explanation to the usual whistler diffusion scenario, suggesting that self-induced electrostatic waves at the plasma frequency might play a key role in broadening the solar wind strahl during quiet solar conditions.

  11. Determination of line broadening constants in high pressure discharge lamps

    International Nuclear Information System (INIS)

    Weiss, M; Schubert, H; Meier, S; Born, M; Reiter, D; Stroesser, M

    2005-01-01

    A numerical model of the radiative transfer in high pressure metal halide discharge lamps is used to determine line broadening parameters for atomic scandium lines. The determined broadening constants are in qualitative agreement with theoretical estimates in many cases, but significant deviations exist. The data obtained from this paper can, therefore, be used to further improve modelling of radiative contributions to the energy balance in such types of discharge lamps

  12. Self-phase-modulation induced spectral broadening in silicon waveguides

    Science.gov (United States)

    Boyraz, Ozdal; Indukuri, Tejaswi; Jalali, Bahram

    2004-03-01

    The prospect for generating supercontinuum pulses on a silicon chip is studied. Using ~4ps optical pulses with 2.2GW/cm2 peak power, a 2 fold spectral broadening is obtained. Theoretical calculations, that include the effect of two-photon-absorption, indicate up to 5 times spectral broadening is achievable at 10x higher peak powers. Representing a nonlinear loss mechanism at high intensities, TPA limits the maximum optical bandwidth that can be generated.

  13. Research on Fast-Doppler-Broadening of neutron cross sections

    International Nuclear Information System (INIS)

    Li, S.; Wang, K.; Yu, G.

    2012-01-01

    A Fast-Doppler-Broadening method is developed in this work to broaden Continuous Energy neutron cross-sections for Monte Carlo calculations. Gauss integration algorithm and parallel computing are implemented in this method, which is unprecedented in the history of cross section processing. Compared to the traditional code (NJOY, SIGMA1, etc.), the new Fast-Doppler-Broadening method shows a remarkable speedup with keeping accuracy. The purpose of using Gauss integration is to avoid complex derivation of traditional broadening formula and heavy load of computing complementary error function that slows down the Doppler broadening process. The OpenMP environment is utilized in parallel computing which can take full advantage of modern multi-processor computers. Combination of the two can reduce processing time of main actinides (such as 238 U, 235 U) to an order of magnitude of 1∼2 seconds. This new method is fast enough to be applied to Online Doppler broadening. It can be combined or coupled with Monte Carlo transport code to solve temperature dependent problems and neutronics-thermal hydraulics coupled scheme which is a big challenge for the conventional NJOY-MCNP system. Examples are shown to determine the efficiency and relative errors compared with the NJOY results. A Godiva Benchmark is also used in order to test the ACE libraries produced by the new method. (authors)

  14. Peak-Broadening of Floor Response Spectra for Base Isolated Nuclear Structures

    International Nuclear Information System (INIS)

    Ju, Heekun; Choun, Young-Sun; Kim, Min-Kyu

    2015-01-01

    In this paper, uncertainties in developing FRS are explained first. Then FDRS of a fixed structure is computed using a conventional method as an example. Lastly FRS of a base-isolated structure is computed and suitability of current peak-broadening method is examined. Uncertainties in the material property of structure influence FRS of fixed structures significantly, but their effect on FRS of base-isolated structures is negligible. Nuclear structures should be designed to ensure the safety of equipment and components mounted on their floors. However, coupled analysis of a structure and components is complex, so equipment is separately analyzed using floor response spectra (FRS). FRS calculated from dynamic analysis of structural model should be modified to create floor design response spectra (FDRS), the input for seismic design of equipment. For nuclear structures, smoothing and broadening peaks of FRS is required to account for uncertainties owing to material properties of structures, soil, modeling techniques, and others. The peak broadening method proposed for fixed based structures may not be appropriate for base-isolated structures because of additional uncertainties in the property of isolation bearings. For base-isolated structures, mechanical property of isolator plays a dominant role on the change of FRS. As base-isolated nuclear plants should meet the ASCE provisions, uncertainty in the isolation system would be around 10%. For the base isolated 3-storied beam model with 2.5-sec isolation period, 6.9% of broadening ratio was enough for development of FDRS at the required variation condition. Also for the models with various isolation periods, less than 10% of broadening ratio was sufficient

  15. Studies of solar flares: Homology and X-ray line broadening

    Science.gov (United States)

    Ranns, Neale David Raymond

    This thesis starts with an introduction to the solar atmosphere and the physics that governs its behaviour. The formation processes of spectral lines are presented followed by an explanation of employed plasma diagnostic techniques and line broadening mechanisms. The current understanding on some principle concepts of flare physics are reviewed and the topics of flare homology and non-thermal line broadening are introduced. The many solar satellites and instrumentation that were utilised during this thesis are described. Analysis techniques for some instruments are also presented. A series of solar flares that conform to the literature definition for homologous flares are examined. The apparent homology is shown to be caused by emerging flux rather than continual stressing of a single, or group of, magnetic structure's. The implications for flare homology are discussed. The analysis of a solar flare with a rise and peak in the observed non-thermal X-ray line broadening (Vnt) is then performed. The location of the hot plasma within the flare area is determined and consequently the source of Vnt is located to be within and above the flare loops. The flare footpoints are therefore discarded as a possible source location. Viable source locations are discussed with a view to determining the dominant mechanism for the generation of line broadening. The timing relationships between the hard X-ray (HXR) flux and Vnt in many solar flares are then examined. I show that there is a causal relationship between these two parameters and that the HXR rise time is related to the time delay between the maxima of HXR flux and Vnt. The temporal evolution of Vnt is shown to be dependent upon the shape of the HXR burst. The implications of these results are discussed in terms of determining the line broadening mechanism and the limitations of the data. A summary of the results in this thesis is then presented together with suggestions for future research.

  16. Mobility-Aware Modeling and Analysis of Dense Cellular Networks With $C$ -Plane/ $U$ -Plane Split Architecture

    KAUST Repository

    Ibrahim, Hazem; Elsawy, Hesham; Nguyen, Uyen Trang; Alouini, Mohamed-Slim

    2016-01-01

    The unrelenting increase in the population of mobile users and their traffic demands drive cellular network operators to densify their network infrastructure. Network densification shrinks the footprint of base stations (BSs) and reduces the number

  17. Correlation between apparent diffusion coefficient (ADC) and cellularity is different in several tumors: a meta-analysis.

    Science.gov (United States)

    Surov, Alexey; Meyer, Hans Jonas; Wienke, Andreas

    2017-08-29

    The purpose of this meta-analysis was to provide clinical evidence regarding relationship between ADC and cellularity in different tumors based on large patient data. Medline library was screened for associations between ADC and cell count in different tumors up to September 2016. Only publications in English were extracted. The Preferred Reporting Items for Systematic Reviews and Meta-Analyses statement (PRISMA) was used for the research. Overall, 39 publications with 1530 patients were included into the analysis. The following data were extracted from the literature: authors, year of publication, number of patients, tumor type, and correlation coefficients. The pooled correlation coefficient for all studies was ρ = -0.56 (95 % CI = [-0.62; -0.50]),. Correlation coefficients ranged from ρ =-0.25 (95 % CI = [-0.63; 0.12]) in lymphoma to ρ=-0.66 (95 % CI = [-0.85; -0.47]) in glioma. Other coefficients were as follows: ovarian cancer, ρ = -0.64 (95% CI = [-0.76; -0.52]); lung cancer, ρ = -0.63 (95 % CI = [-0.78; -0.48]); uterine cervical cancer, ρ = -0.57 (95 % CI = [-0.80; -0.34]); prostatic cancer, ρ = -0.56 (95 % CI = [-0.69; -0.42]); renal cell carcinoma, ρ = -0.53 (95 % CI = [-0.93; -0.13]); head and neck squamous cell carcinoma, ρ = -0.53 (95 % CI = [-0.74; -0.32]); breast cancer, ρ = -0.48 (95 % CI = [-0.74; -0.23]); and meningioma, ρ = -0.45 (95 % CI = [-0.73; -0.17]).

  18. A liquid chromatography/tandem mass spectrometry assay for the analysis of atomoxetine in human plasma and in vitro cellular samples

    Science.gov (United States)

    Appel, David I.; Brinda, Bryan; Markowitz, John S.; Newcorn, Jeffrey H.; Zhu, Hao-Jie

    2012-01-01

    A simple, rapid and sensitive method for quantification of atomoxetine by liquid chromatography- tandem mass spectrometry (LC-MS/MS) was developed. This assay represents the first LC-MS/MS quantification method for atomoxetine utilizing electrospray ionization. Deuterated atomoxetine (d3-atomoxetine) was adopted as the internal standard. Direct protein precipitation was utilized for sample preparation. This method was validated for both human plasma and in vitro cellular samples. The lower limit of quantification was 3 ng/ml and 10 nM for human plasma and cellular samples, respectively. The calibration curves were linear within the ranges of 3 ng/ml to 900 ng/ml and 10 nM to 10 μM for human plasma and cellular samples, respectively (r2 > 0.999). The intra- and inter-day assay accuracy and precision were evaluated using quality control samples at 3 different concentrations in both human plasma and cellular lysate. Sample run stability, assay selectivity, matrix effect, and recovery were also successfully demonstrated. The present assay is superior to previously published LC-MS and LC-MS/MS methods in terms of sensitivity or the simplicity of sample preparation. This assay is applicable to the analysis of atomoxetine in both human plasma and in vitro cellular samples. PMID:22275222

  19. Broadening the Participation of Native Americans in Earth Science

    Science.gov (United States)

    Bueno Watts, Nievita

    Climate change is not a thing of the future. Indigenous people are being affected by climate changes now. Native American Earth scientists could help Native communities deal with both climate change and environmental pollution issues, but are noticeably lacking in Earth Science degree programs. The Earth Sciences produce the lowest percentage of minority scientists when compared with other science and engineering fields. Twenty semi-structured interviews were gathered from American Indian/ Alaska Native Earth Scientists and program directors who work directly with Native students to broaden participation in the field. Data was analyzed using qualitative methods and constant comparison analysis. Barriers Native students faced in this field are discussed, as well as supports which go the furthest in assisting achievement of higher education goals. Program directors give insight into building pathways and programs to encourage Native student participation and success in Earth Science degree programs. Factors which impede obtaining a college degree include financial barriers, pressures from familial obligations, and health issues. Factors which impede the decision to study Earth Science include unfamiliarity with geoscience as a field of study and career choice, the uninviting nature of Earth Science as a profession, and curriculum that is irrelevant to the practical needs of Native communities or courses which are inaccessible geographically. Factors which impede progress that are embedded in Earth Science programs include educational preparation, academic information and counseling and the prevalence of a Western scientific perspective to the exclusion of all other perspectives. Intradepartmental relationships also pose barriers to the success of some students, particularly those who are non-traditional students (53%) or women (80%). Factors which support degree completion include financial assistance, mentors and mentoring, and research experiences. Earth scientists

  20. Statistical mechanics of cellular automata

    International Nuclear Information System (INIS)

    Wolfram, S.

    1983-01-01

    Cellular automata are used as simple mathematical models to investigate self-organization in statistical mechanics. A detailed analysis is given of ''elementary'' cellular automata consisting of a sequence of sites with values 0 or 1 on a line, with each site evolving deterministically in discrete time steps according to p definite rules involving the values of its nearest neighbors. With simple initial configurations, the cellular automata either tend to homogeneous states, or generate self-similar patterns with fractal dimensions approx. =1.59 or approx. =1.69. With ''random'' initial configurations, the irreversible character of the cellular automaton evolution leads to several self-organization phenomena. Statistical properties of the structures generated are found to lie in two universality classes, independent of the details of the initial state or the cellular automaton rules. More complicated cellular automata are briefly considered, and connections with dynamical systems theory and the formal theory of computation are discussed

  1. How the knowledge of genetic "makeup" and cellular data can affect the analysis of repolarization in surface electrocardiogram.

    Science.gov (United States)

    Shimizu, Wataru

    2010-01-01

    This review article sought to describe patterns of repolarization on the surface electrocardiogram in inherited cardiac arrhythmias and to discuss how the knowledge of genetic makeup and cellular data can affect the analysis based on the data derived from the experimental studies using arterially perfused canine ventricular wedge preparations. Molecular genetic studies have established a link between a number of inherited cardiac arrhythmia syndromes and mutations in genes encoding cardiac ion channels or membrane components during the past 2 decades. Twelve forms of congenital long QT syndrome have been so far identified, and genotype-phenotype correlations have been investigated especially in the 3 major genotypes-LQT1, LQT2, and LQT3. Abnormal T waves are reported in the LQT1, LQT2, and LQT3, and the differences in the time course of repolarization of the epicardial, midmyocardial, and endocardial cells give rise to voltage gradients responsible for the manifestation of phenotypic appearance of abnormal T waves. Brugada syndrome is characterized by ST-segment elevation in leads V1 to V3 and an episode of ventricular fibrillation, in which 7 genotypes have been reported. An intrinsically prominent transient outward current (I(to))-mediated action potential notch and a subsequent loss of action potential dome in the epicardium, but not in the endocardium of the right ventricular outflow tract, give rise to a transmural voltage gradient, resulting in ST-segment elevation, and a subsequent phase 2 reentry-induced ventricular fibrillation. In conclusion, transmural electrical heterogeneity of repolarization across the ventricular wall profoundly affects the phenotypic manifestation of repolarization patterns on the surface electrocardiogram in inherited cardiac arrhythmias. Copyright © 2010 Elsevier Inc. All rights reserved.

  2. SNP Identification through Transcriptome Analysis of the European Brown Hare (Lepus europaeus: Cellular Energetics and Mother's Curse.

    Directory of Open Access Journals (Sweden)

    Grigoris D Amoutzias

    Full Text Available The European brown hare (Lepus europaeus, Pallas 1778 is an important small game species in Europe. Due to its size and position in the food chain, as well as its life history, phenotypic variation and the relatively recent speciation events, brown hare plays an important role in the structure of various ecosystems and has emerged as an important species for population management and evolutionary studies. In order to identify informative SNPs for such studies, heart and liver tissues of three samples from the European lineage and a three-sample pool from the Anatolian lineage were subjected to RNA-Sequencing analysis. This effort resulted in 9496 well-assembled protein-coding sequences with close homology to human. After applying very stringent filtering criteria, 66185 polymorphic sites were identified in 7665 genes/cds and 2050 of those polymorphic sites are potentially capable of distinguishing the European from the Anatolian lineage. From these distinguishing mutations we focused on those in genes that are involved in cellular energy production, namely the glycolysis, Krebs cycle and the OXPHOS machinery. A selected set of SNPs was also validated by Sanger sequencing. By simulating the three European individuals as one pool, no substantial informative-SNP identification was lost, making it a cost-efficient approach. To our knowledge this is the first attempt to correlate the differentiation in both nuclear and mitochondrial genome between the two different lineages of L. europaeus with the observed spatial partitioning of the lineages of the species, proposing a possible mechanism that is maintaining the reproductive isolation of the lineages.

  3. Action Potential Broadening in Capsaicin-Sensitive DRG Neurons from Frequency-Dependent Reduction of Kv3 Current.

    Science.gov (United States)

    Liu, Pin W; Blair, Nathaniel T; Bean, Bruce P

    2017-10-04

    Action potential (AP) shape is a key determinant of cellular electrophysiological behavior. We found that in small-diameter, capsaicin-sensitive dorsal root ganglia neurons corresponding to nociceptors (from rats of either sex), stimulation at frequencies as low as 1 Hz produced progressive broadening of the APs. Stimulation at 10 Hz for 3 s resulted in an increase in AP width by an average of 76 ± 7% at 22°C and by 38 ± 3% at 35°C. AP clamp experiments showed that spike broadening results from frequency-dependent reduction of potassium current during spike repolarization. The major current responsible for frequency-dependent reduction of overall spike-repolarizing potassium current was identified as Kv3 current by its sensitivity to low concentrations of 4-aminopyridine (IC 50 action potentials of small-diameter rat DRG neurons showed spike broadening at frequencies as low as 1 Hz and that spike broadening resulted predominantly from frequency-dependent inactivation of Kv3 channels. Spike width helps to control transmitter release, conduction velocity, and firing patterns and understanding the role of particular potassium channels can help to guide new pharmacological strategies for targeting pain-sensing neurons selectively. Copyright © 2017 the authors 0270-6474/17/379705-10$15.00/0.

  4. Cellular dosimetry

    International Nuclear Information System (INIS)

    Humm, J.L.; Chin, L.M.

    1989-01-01

    Radiation dose is a useful predictive parameter for describing radiation toxicity in conventional radiotherapy. Traditionally, in vitro radiation biology dose-effect relations are expressed in the form of cell survival curves, a semilog plot of cell survival versus dose. However, the characteristic linear or linear quadratic survival curve shape, for high- and low-LET radiations respectively, is only strictly valid when the radiation dose is uniform across the entire target population. With an external beam of 60 Co gamma rays or x-rays, a uniform field may be readily achievable. When radionuclides are incorporated into a cell milieu, several new problems emerge which can result in a departure from uniformity in energy deposition throughout a cell population. This nonuniformity can have very important consequences for the shape of the survival curve. Cases in which perturbations of source uniformity may arise include: 1. Elemental sources may equilibrate in the cell medium with partition coefficients between the extracellular, cytosol, and nuclear compartments. The effect of preferential cell internalization or binding to cell membrane of some radionuclides can increase or decrease the slope of the survival curve. 2. Radionuclides bound to antibodies, hormones, metabolite precursors, etc., may result in a source localization pattern characteristic of the carrier agent, i.e., the sources may bind to cell surface receptors or antigens, be internalized, bind to secreted antigen concentrated around a fraction of the cell population, or become directly incorporated into the cell DNA. We propose to relate the distribution of energy deposition in cell nuclei to biological correlates of cellular inactivation. The probability of each cell's survival is weighted by its individual radiation burden, and the summation of these probabilities for the cell population can be used to predict the number or fraction of cell survivors

  5. Beam broadening of polar molecules and clusters in deflection experiments.

    Science.gov (United States)

    Bulthuis, J; Kresin, V V

    2012-01-07

    A beam of rotating dipolar particles (molecules or clusters) will broaden when passed through an electric or magnetic field gradient region. This broadening, which is a common experimental observable, can be expressed in terms of the variance of the distribution of the resulting polarization orientation (the direction cosine). Here, the broadening for symmetric-top and linear rotors is discussed. These two types of rotors have qualitatively different low-field orientation distribution functions, but behave similarly in a strong field. While analytical expressions for the polarization variance can be derived from first-order perturbation theory, for experimental guidance it is important to identify the applicability and limitations of these expressions, and the general dependence of the broadening on the experimental parameters. For this purpose, the analytical results are compared with the full diagonalization of the rotational Stark-effect matrices. Conveniently for experimental estimations, it is found that for symmetric tops, the dependence of the broadening parameter on the rotational constant, the axial ratio, and the field strength remains similar to the analytical expression even outside of the perturbative regime. Also, it is observed that the shape envelope, the centroid, and the width of the orientation distribution function for a symmetric top are quite insensitive to the value of its rotational constant (except at low rotational temperatures).

  6. Deconvolution of shift-variant broadening for Compton scatter imaging

    International Nuclear Information System (INIS)

    Evans, Brian L.; Martin, Jeffrey B.; Roggemann, Michael C.

    1999-01-01

    A technique is presented for deconvolving shift-variant Doppler broadening of singly Compton scattered gamma rays from their recorded energy distribution. Doppler broadening is important in Compton scatter imaging techniques employing gamma rays with energies below roughly 100 keV. The deconvolution unfolds an approximation to the angular distribution of scattered photons from their recorded energy distribution in the presence of statistical noise and background counts. Two unfolding methods are presented, one based on a least-squares algorithm and one based on a maximum likelihood algorithm. Angular distributions unfolded from measurements made on small scattering targets show less evidence of Compton broadening. This deconvolution is shown to improve the quality of filtered backprojection images in multiplexed Compton scatter tomography. Improved sharpness and contrast are evident in the images constructed from unfolded signals

  7. Cellular angiofibroma: analysis of 25 cases emphasizing its relationship to spindle cell lipoma and mammary-type myofibroblastoma

    NARCIS (Netherlands)

    Flucke, U.E.; Krieken, J.H. van; Mentzel, T.

    2011-01-01

    Cellular angiofibroma represents a rare benign mesenchymal tumor, occurring mainly in the superficial soft tissue of the genital region. The involvement of 13q14 in some cases confirmed the morphological suggested link with spindle cell lipoma and mammary-type myofibroblastoma. We analyzed the

  8. Frequency domain analysis of the lightning current distribution to ground at the transmission line tower with cellular phone base station

    NARCIS (Netherlands)

    Grcev, L.; Deursen, van A.P.J.; Waes, van J.B.M.

    2003-01-01

    Cellular phone base stations are often placed in the poles of power transmission lines. We consider the case when such base stations are powered from the low-voltage network. Of special concern is the current that might be led through the cable metallic shields to other customers' premises in case

  9. Digital setup for Doppler broadening spectroscopy

    International Nuclear Information System (INIS)

    Cizek, J; Vlcek, M; Prochazka, I

    2011-01-01

    New digital spectrometer for measurement of the Doppler shift of annihilation photons was developed and tested in this work. Digital spectrometer uses a fast 12-bit digitizer for direct sampling of signals from HPGe detectors. Analysis of sampled waveforms is performed off-line in software. Performance of the new digital setup was compared with its traditional analogue counterpart. Superior energy resolution was achieved in the digital setup. Moreover, the digital setup allows for a better control of the shape of detector signals. This enables to eliminate undesired signals damaged by pile-up effects or by ballistic deficit.

  10. Chemical Analysis of Cellular and Extracellular Carbohydrates of a Biofilm-Forming Strain Pseudomonas aeruginosa PA14

    Science.gov (United States)

    Coulon, Charlène; Vinogradov, Evgeny; Filloux, Alain; Sadovskaya, Irina

    2010-01-01

    Background Pseudomonas aeruginosa is a Gram-negative bacterium and an opportunistic pathogen, which causes persisting life-threatening infections in cystic fibrosis (CF) patients. Biofilm mode of growth facilitates its survival in a variety of environments. Most P. aeruginosa isolates, including the non-mucoid laboratory strain PA14, are able to form a thick pellicle, which results in a surface-associated biofilm at the air-liquid (A–L) interface in standing liquid cultures. Exopolysaccharides (EPS) are considered as key components in the formation of this biofilm pellicle. In the non-mucoid P. aeruginosa strain PA14, the “scaffolding” polysaccharides of the biofilm matrix, and the molecules responsible for the structural integrity of rigid A–L biofilm have not been identified. Moreover, the role of LPS in this process is unclear, and the chemical structure of the LPS O-antigen of PA14 has not yet been elucidated. Principal Findings In the present work we carried out a systematic analysis of cellular and extracellular (EC) carbohydrates of P. aeruginosa PA14. We also elucidated the chemical structure of the LPS O-antigen by chemical methods and 2-D NMR spectroscopy. Our results showed that it is composed of linear trisaccharide repeating units, identical to those described for P. aeruginosa Lanýi type O:2a,c (Lanýi-Bergman O-serogroup 10a, 10c; IATS serotype 19) and having the following structure: -4)-α-L-GalNAcA-(1–3)-α-D-QuiNAc-(1–3)- α-L-Rha-(1-. Furthermore, an EC O-antigen polysaccharide (EC O-PS) and the glycerol-phosphorylated cyclic β-(1,3)-glucans were identified in the culture supernatant of PA14, grown statically in minimal medium. Finally, the extracellular matrix of the thick biofilm formed at the A-L interface contained, in addition to eDNA, important quantities (at least ∼20% of dry weight) of LPS-like material. Conclusions We characterized the chemical structure of the LPS O-antigen and showed that the O-antigen polysaccharide is

  11. Study of peak broadening effect in floor time histories

    International Nuclear Information System (INIS)

    Soni, R.S.; Kushwaha, H.S.; Mahajan, S.C.; Kakodkar, A.

    1996-01-01

    Seismic design of secondary systems such components and piping is usually carried out by using the floor motions at their support points. These floor motions can be in the form of Floor Response Spectra (FRS) or the Floor Time Histories (FTH). In order to account for the various uncertainties in generating these floor motions, these motions should be peak broadened and smoothened as per the regulatory codes. Presented here in this paper is the methodology to account for such peak broadening effect in the FTH. Results of this study have been compared with the FRS approach and various important conclusions have been arrived at based on the study

  12. Doppler-broadening of positron annihilation in a biological environment

    International Nuclear Information System (INIS)

    Torrisi, L.; La Mela, C.; Catania, Univ.

    1997-01-01

    The aim of this study was to investigate the Doppler effect of the 511 keV γ peak from positron annihilation in biological matter: The broadening of the annihilation peak is due to positron annihilation with electrons that have high momentum. In aqueous solutions annihilation depends on the temperature and it is linked positronium formation. Measurements in vivo, on human brain, were taken during the diagnosis of positron emission tomography (PET) on healthy patients by injecting them with the beta emitter of short lifetime 18F . The Doppler-broadening in biological tissues rich in water content decreased significantly compared to biological solutions and water

  13. Line-broadened quasilinear burst model

    International Nuclear Information System (INIS)

    Berk, H.L.; Breizman, B.N.; Wong, H.V.; Fitzpatrick, J.

    1995-07-01

    A quasilinear model is developed to produce realistic self-consistent saturation levels when modes do not overlap, and give self-consistent diffusion and wave evolution when modes do overlap. Both regimes give steady or pulsating behavior in weakly driven systems with classical relaxation and background dissipation present. An avalanche response is demonstrated: wave momentum release caused by the overlap of closely spaced modes can produce mode overlap of more widely spaced modes (a domino effect) or the growth of modes which would be stable in systems unaffected by the closely-spaced modes' diffusion. Detailed analysis and calculations are performed for the bump-on-tail instability, and extension of the method to more general problems is briefly discussed

  14. Optical bistability in the oscillation of an inhomogeneously broadened quasi-three-level laser

    International Nuclear Information System (INIS)

    Liu, Junhai; Tian, Xueping

    2013-01-01

    A theoretical modeling analysis is presented to study the optical bistability exhibited in the oscillation of an inhomogeneously broadened quasi-three-level laser. All the major characteristics of optical bistability depend on two normalized parameters, f and x a , which are defined by f = I sat,a /I sat,m and x a = 2α a0 p a /δ and are related to measurable properties of the laser medium. In comparison with the case of a homogeneously broadened laser, the essential condition for the occurrence of such bistability, f a /(x a + 1), turns out to be the same, whereas the intensities at the up- and down-thresholds are substantially increased and the bistability range is reduced. (paper)

  15. Information Theory Broadens the Spectrum of Molecular Ecology and Evolution.

    Science.gov (United States)

    Sherwin, W B; Chao, A; Jost, L; Smouse, P E

    2017-12-01

    Information or entropy analysis of diversity is used extensively in community ecology, and has recently been exploited for prediction and analysis in molecular ecology and evolution. Information measures belong to a spectrum (or q profile) of measures whose contrasting properties provide a rich summary of diversity, including allelic richness (q=0), Shannon information (q=1), and heterozygosity (q=2). We present the merits of information measures for describing and forecasting molecular variation within and among groups, comparing forecasts with data, and evaluating underlying processes such as dispersal. Importantly, information measures directly link causal processes and divergence outcomes, have straightforward relationship to allele frequency differences (including monotonicity that q=2 lacks), and show additivity across hierarchical layers such as ecology, behaviour, cellular processes, and nongenetic inheritance. Copyright © 2017 Elsevier Ltd. All rights reserved.

  16. Mobility-Aware Modeling and Analysis of Dense Cellular Networks With $C$ -Plane/ $U$ -Plane Split Architecture

    KAUST Repository

    Ibrahim, Hazem

    2016-09-19

    The unrelenting increase in the population of mobile users and their traffic demands drive cellular network operators to densify their network infrastructure. Network densification shrinks the footprint of base stations (BSs) and reduces the number of users associated with each BS, leading to an improved spatial frequency reuse and spectral efficiency, and thus, higher network capacity. However, the densification gain comes at the expense of higher handover rates and network control overhead. Hence, user’s mobility can diminish or even nullifies the foreseen densification gain. In this context, splitting the control plane ( C -plane) and user plane ( U -plane) is proposed as a potential solution to harvest densification gain with reduced cost in terms of handover rate and network control overhead. In this paper, we use stochastic geometry to develop a tractable mobility-aware model for a two-tier downlink cellular network with ultra-dense small cells and C -plane/ U -plane split architecture. The developed model is then used to quantify the effect of mobility on the foreseen densification gain with and without C -plane/ U -plane split. To this end, we shed light on the handover problem in dense cellular environments, show scenarios where the network fails to support certain mobility profiles, and obtain network design insights.

  17. Training practices of cell processing laboratory staff: analysis of a survey by the Alliance for Harmonization of Cellular Therapy Accreditation.

    Science.gov (United States)

    Keever-Taylor, Carolyn A; Slaper-Cortenbach, Ineke; Celluzzi, Christina; Loper, Kathy; Aljurf, Mahmoud; Schwartz, Joseph; Mcgrath, Eoin; Eldridge, Paul

    2015-12-01

    Methods for processing products used for hematopoietic progenitor cell (HPC) transplantation must ensure their safety and efficacy. Personnel training and ongoing competency assessment is critical to this goal. Here we present results from a global survey of methods used by a diverse array of cell processing facilities for the initial training and ongoing competency assessment of key personnel. The Alliance for Harmonisation of Cellular Therapy Accreditation (AHCTA) created a survey to identify facility type, location, activity, personnel, and methods used for training and competency. A survey link was disseminated through organizations represented in AHCTA to processing facilities worldwide. Responses were tabulated and analyzed as a percentage of total responses and as a percentage of response by region group. Most facilities were based at academic medical centers or hospitals. Facilities with a broad range of activity, product sources and processing procedures were represented. Facilities reported using a combination of training and competency methods. However, some methods predominated. Cellular sources for training differed for training versus competency and also differed based on frequency of procedures performed. Most facilities had responsibilities for procedures in addition to processing for which training and competency methods differed. Although regional variation was observed, training and competency requirements were generally consistent. Survey data showed the use of a variety of training and competency methods but some methods predominated, suggesting their utility. These results could help new and established facilities in making decisions for their own training and competency programs. Copyright © 2015 International Society for Cellular Therapy. Published by Elsevier Inc. All rights reserved.

  18. Modeling and Analysis of Hybrid Cellular/WLAN Systems with Integrated Service-Based Vertical Handoff Schemes

    Science.gov (United States)

    Xia, Weiwei; Shen, Lianfeng

    We propose two vertical handoff schemes for cellular network and wireless local area network (WLAN) integration: integrated service-based handoff (ISH) and integrated service-based handoff with queue capabilities (ISHQ). Compared with existing handoff schemes in integrated cellular/WLAN networks, the proposed schemes consider a more comprehensive set of system characteristics such as different features of voice and data services, dynamic information about the admitted calls, user mobility and vertical handoffs in two directions. The code division multiple access (CDMA) cellular network and IEEE 802.11e WLAN are taken into account in the proposed schemes. We model the integrated networks by using multi-dimensional Markov chains and the major performance measures are derived for voice and data services. The important system parameters such as thresholds to prioritize handoff voice calls and queue sizes are optimized. Numerical results demonstrate that the proposed ISHQ scheme can maximize the utilization of overall bandwidth resources with the best quality of service (QoS) provisioning for voice and data services.

  19. Coherent excitonic nonlinearity versus inhomogeneous broadening in single quantum wells

    DEFF Research Database (Denmark)

    Langbein, Wolfgang Werner; Borri, Paola; Hvam, Jørn Märcher

    1998-01-01

    The coherent response of excitons in semiconductor nanostructures, as measured in four wave mixing (FWM) experiments, depends strongly on the inhomogeneous broadening of the exciton transition. We investigate GaAs-AlGaAs single quantum wells (SQW) of 4 nm to 25 nm well width. Two main mechanisms...

  20. On the Fly Doppler Broadening Using Multipole Representation

    International Nuclear Information System (INIS)

    Khassenov, Azamat; Choi, Sooyoung; Lee, Deokjung

    2015-01-01

    On the Fly Doppler broadening is the technique to avoid pre-generation of the microscopic cross section, in other words, reduce the amount of storage. Currently, there are different types of formalisms used by NJOY code to generate reaction cross section and accomplish its Doppler broadening. Single-Level Breit-Wigner (SLBW) formalism is limited to well-separated resonances, in other words, it does not consider interference between energy levels. Multi-Level Breit- Wigner formalism (MLBW) was tested as the candidate for the cross section generation in the Monte Carlo code, which is under development in UNIST. According to the results, MLBW method requires huge amount of computational time to produce cross section at certain energy point. Reich-Moore (RM) technique can generate only 0K cross section, which means that it cannot produce broaden cross section directly from resonance parameters. The first step was to convert resonance parameters given in nuclear data file into multipoles. MPR shows very high potential to be used as the formalism in the on-the-fly Doppler broadening module of MCS. One of the main reasons is that comparison of the time cost shown in Table IV supports application of multipole representation

  1. Optical coherent control in semiconductors: Fringe contrast and inhomogeneous broadening

    DEFF Research Database (Denmark)

    Østergaard, John Erland; Vadim, Lyssenko; Hvam, Jørn Märcher

    2001-01-01

    in the interplay between the homogeneous and inhomogeneous broadenings are measured. Based on these experiments, a coherent control model describing the optical fringe contrast using different detection schemes, such as photoluminescence or four-wave mixing, is established. Significant spectral modulation...

  2. Electromagnetically-induced transparency in Doppler-broadened ...

    Indian Academy of Sciences (India)

    2014-02-08

    Feb 8, 2014 ... triple EIT windows depending on the amplitude and detuning of the coupling fields. Keywords. Electromagnetically-induced transparency; atomic ... photon transparency [6] and the effect of spontaneously generated coherence on EIT [7] using homogenously broadened models. Pramana – J. Phys., Vol.

  3. Quasi-elastic neutron line broadening in nematic liquid crystals

    International Nuclear Information System (INIS)

    Cvikl, B.; Dimic, V.; Dusic, M.; Kristof, E.; Srebotnjak, E.

    1979-01-01

    On the basis of a new random walk torsional oscillations model of the amplitude φ 0 of rigid flat molecules a quasi-elastic neutron line broadening has been calculated and the results compared to the measurements obtained on the sample of cholesteryl propionate. A good agreement was obtained. (author)

  4. Transboundary natural area protection: Broadening the definition of national security

    Science.gov (United States)

    Haven B. Cook

    2007-01-01

    This paper looks at the definition and concept of national security, and examines how the environment is linked with national security. The traditional, state view of national security that guides most foreign policy includes the concepts of military power, sovereignty and geopolitical stability. This paper advocates broadening the definition of security to include...

  5. Line broadening in multiphoton processes with a resonant intermediate transition

    International Nuclear Information System (INIS)

    Wang, C.C.; James, J.V.; Xia, J.

    1983-01-01

    The linewidth of the excitation spectrum for multiphoton ionization is found to be broadened much more severely than the cascade fluorescence originating from the resonant intermediate level. These results are due to the mutual effects of the ionizing and resonating transitions, which are not properly accounted for in perturbative treatments

  6. Determination of foreign broadening coefficients for Methane Lines Targeted by the Tunable Laser Spectrometer (TLS) on the Mars Curiosity Rover

    International Nuclear Information System (INIS)

    Manne, Jagadeeshwari; Bui, Thinh Q.; Webster, Christopher R.

    2017-01-01

    Molecular line parameters of foreign- broadening by air, carbon dioxide, and helium gas have been experimentally determined for infrared ro-vibrational spectral lines of methane isotopologues ("1"2CH_4 and "1"3CH_4) at 3057 cm"−"1 targeted by the Tunable Laser Spectrometer (TLS) in the Sample Analysis at Mars (SAM) instrument suite on the Mars Science Laboratory (MSL) Curiosity rover. From multi-spectrum analyses with the speed-dependent Voigt line profile with Rosenkrantz line-mixing, speed-dependence and line-mixing effects were quantified for methane spectra at total pressures up to 200 mbar. The fitted air-broadening coefficients deviated from 8–25% to those reported in the HITRAN-2012 database. - Highlights: • Measurements of foreign broadening coefficients for Mars-TLS specific methane lines. • Spectral parameters were deduced from Speed-dependent Voigt profile with line mixing effects taken into account. • A thorough comparison of different line profile fits for the Mars-TLS methane lines. The fitted broadening coefficients and areas deviated up to 30% and 4%, respectively, when comparing the speed-dependent Voigt profile (with Rosenkrantz line-mixing) with the simplest Voigt profile. • Foreign broadening coefficients were measured within a precision of 2.2%.

  7. Hydrogen Balmer Line Broadening in Solar and Stellar Flares

    Energy Technology Data Exchange (ETDEWEB)

    Kowalski, Adam F. [Department of Astrophysical and Planetary Sciences, University of Colorado Boulder, 2000 Colorado Avenue, Boulder, CO 80305 (United States); Allred, Joel C. [NASA/Goddard Space Flight Center, Code 671, Greenbelt, MD 20771 (United States); Uitenbroek, Han [National Solar Observatory, University of Colorado Boulder, 3665 Discovery Drive, Boulder, CO 80303 (United States); Tremblay, Pier-Emmanuel [Department of Physics, University of Warwick, Coventry CV47AL (United Kingdom); Brown, Stephen [School of Physics and Astronomy, Kelvin Building, University of Glasgow, G12 8QQ (United Kingdom); Carlsson, Mats [Institute of Theoretical Astrophysics, University of Oslo, P.O. Box 1029 Blindern, NO-0315 Oslo (Norway); Osten, Rachel A. [Space Telescope Science Institute, 3700 San Martin Drive, Baltimore, MD 21218 (United States); Wisniewski, John P. [Homer L. Dodge Department of Physics and Astronomy, University of Oklahoma, 440 W. Brooks Street, Norman, OK 73019 (United States); Hawley, Suzanne L., E-mail: Adam.Kowalski@lasp.colorado.edu [University of Washington Department of Astronomy, 3910 15th Avenue NE, Seattle, WA 98195 (United States)

    2017-03-10

    The broadening of the hydrogen lines during flares is thought to result from increased charge (electron, proton) density in the flare chromosphere. However, disagreements between theory and modeling prescriptions have precluded an accurate diagnostic of the degree of ionization and compression resulting from flare heating in the chromosphere. To resolve this issue, we have incorporated the unified theory of electric pressure broadening of the hydrogen lines into the non-LTE radiative-transfer code RH. This broadening prescription produces a much more realistic spectrum of the quiescent, A0 star Vega compared to the analytic approximations used as a damping parameter in the Voigt profiles. We test recent radiative-hydrodynamic (RHD) simulations of the atmospheric response to high nonthermal electron beam fluxes with the new broadening prescription and find that the Balmer lines are overbroadened at the densest times in the simulations. Adding many simultaneously heated and cooling model loops as a “multithread” model improves the agreement with the observations. We revisit the three-component phenomenological flare model of the YZ CMi Megaflare using recent and new RHD models. The evolution of the broadening, line flux ratios, and continuum flux ratios are well-reproduced by a multithread model with high-flux nonthermal electron beam heating, an extended decay phase model, and a “hot spot” atmosphere heated by an ultrarelativistic electron beam with reasonable filling factors: ∼0.1%, 1%, and 0.1% of the visible stellar hemisphere, respectively. The new modeling motivates future work to understand the origin of the extended gradual phase emission.

  8. GOLD: Building capacity for broadening participation in the Geosciences

    Science.gov (United States)

    Adams, Amanda; Patino, Lina; Jones, Michael B.; Rom, Elizabeth

    2017-04-01

    The geosciences continue to lag other science, technology, engineering, and mathematics (STEM) disciplines in the engagement, recruitment and retention of traditionally underrepresented and underserved minorities, requiring more focused and strategic efforts to address this problem. Prior investments made by the National Science Foundation (NSF) related to broadening participation in STEM have identified many effective strategies and model programs for engaging, recruiting, and retaining underrepresented students in the geosciences. These investments also have documented clearly the importance of committed, knowledgeable, and persistent leadership for making local progress in broadening participation in STEM and the geosciences. Achieving diversity at larger and systemic scales requires a network of diversity "champions" who can catalyze widespread adoption of these evidence-based best practices and resources. Although many members of the geoscience community are committed to the ideals of broadening participation, the skills and competencies that empower people who wish to have an impact, and make them effective as leaders in that capacity for sustained periods of time, must be cultivated through professional development. The NSF GEO Opportunities for Leadership in Diversity (GOLD) program was implemented in 2016, as a funding opportunity utilizing the Ideas Lab mechanism. Ideas Labs are intensive workshops focused on finding innovative solutions to grand challenge problems. The ultimate aim of this Ideas Lab, organized by the NSF Directorate for Geosciences (GEO), was to facilitate the design, pilot implementation, and evaluation of innovative professional development curricula that can unleash the potential of geoscientists with interests in broadening participation to become impactful leaders within the community. The expectation is that mixing geoscientists with experts in broadening participation research, behavioral change, social psychology, institutional

  9. Homogenization of Doppler broadening in spin-noise spectroscopy

    Science.gov (United States)

    Petrov, M. Yu.; Ryzhov, I. I.; Smirnov, D. S.; Belyaev, L. Yu.; Potekhin, R. A.; Glazov, M. M.; Kulyasov, V. N.; Kozlov, G. G.; Aleksandrov, E. B.; Zapasskii, V. S.

    2018-03-01

    The spin-noise spectroscopy, being a nonperturbative linear optics tool, is still reputed to reveal a number of capabilities specific to nonlinear optics techniques. The effect of the Doppler broadening homogenization discovered in this work essentially widens these unique properties of spin-noise spectroscopy. We investigate spin noise of a classical system—cesium atoms vapor with admixture of buffer gas—by measuring the spin-induced Faraday rotation fluctuations in the region of D 2 line. The line, under our experimental conditions, is strongly inhomogeneously broadened due to the Doppler effect. Despite that, optical spectrum of the spin-noise power has the shape typical for the homogeneously broadened line with a dip at the line center. This fact is in stark contrast with the results of previous studies of inhomogeneous quantum dot ensembles and Doppler broadened atomic systems. In addition, the two-color spin-noise measurements have shown, in a highly spectacular way, that fluctuations of the Faraday rotation within the line are either correlated or anticorrelated depending on whether the two wavelengths lie on the same side or on different sides of the resonance. The experimental data are interpreted in the frame of the developed theoretical model which takes into account both kinetics and spin dynamics of Cs atoms. It is shown that the unexpected behavior of the Faraday rotation noise spectra and effective homogenization of the optical transition in the spin-noise measurements are related to smallness of the momentum relaxation time of the atoms as compared with their spin-relaxation time. Our findings demonstrate abilities of spin-noise spectroscopy for studying dynamic properties of inhomogeneously broadened ensembles of randomly moving spins.

  10. Hydrogen Balmer Line Broadening in Solar and Stellar Flares

    International Nuclear Information System (INIS)

    Kowalski, Adam F.; Allred, Joel C.; Uitenbroek, Han; Tremblay, Pier-Emmanuel; Brown, Stephen; Carlsson, Mats; Osten, Rachel A.; Wisniewski, John P.; Hawley, Suzanne L.

    2017-01-01

    The broadening of the hydrogen lines during flares is thought to result from increased charge (electron, proton) density in the flare chromosphere. However, disagreements between theory and modeling prescriptions have precluded an accurate diagnostic of the degree of ionization and compression resulting from flare heating in the chromosphere. To resolve this issue, we have incorporated the unified theory of electric pressure broadening of the hydrogen lines into the non-LTE radiative-transfer code RH. This broadening prescription produces a much more realistic spectrum of the quiescent, A0 star Vega compared to the analytic approximations used as a damping parameter in the Voigt profiles. We test recent radiative-hydrodynamic (RHD) simulations of the atmospheric response to high nonthermal electron beam fluxes with the new broadening prescription and find that the Balmer lines are overbroadened at the densest times in the simulations. Adding many simultaneously heated and cooling model loops as a “multithread” model improves the agreement with the observations. We revisit the three-component phenomenological flare model of the YZ CMi Megaflare using recent and new RHD models. The evolution of the broadening, line flux ratios, and continuum flux ratios are well-reproduced by a multithread model with high-flux nonthermal electron beam heating, an extended decay phase model, and a “hot spot” atmosphere heated by an ultrarelativistic electron beam with reasonable filling factors: ∼0.1%, 1%, and 0.1% of the visible stellar hemisphere, respectively. The new modeling motivates future work to understand the origin of the extended gradual phase emission.

  11. Linear and nonlinear light propagations in a Doppler-broadened medium via electromagnetically induced transparency

    International Nuclear Information System (INIS)

    Li Liang; Huang Guoxiang

    2010-01-01

    We present a systematic theoretical study to deal with linear and nonlinear light propagations in a Doppler-broadened three-level Λ system via electromagnetically induced transparency (EIT), with incoherent population exchange between two lower energy levels taken into account. Through a careful analysis of base state and linear excitation, we show that the EIT condition of the system is given by |Ω c | 2 γ 31 >>2γ 21 Δω D 2 , where Ω c is half the Rabi frequency of the control field, Δω D is the Doppler width, and γ jl is the decay rate of the coherence between states |j> and |l>. Under this condition, the effect of incoherent population exchange is insignificant, while dephasing dominates the decoherence of the system. This condition also ensures the validity of the weak nonlinear perturbation theory used in this work for solving the Maxwell-Bloch equations with inhomogeneous broadening. We then investigate the nonlinear propagation of the probe field and show that it is possible to form temporal optical solitons in the Doppler-broadened medium. Such solitons have ultraslow propagating velocity and can be generated in very low light power. The possibility of realizing (1+1)-dimensional and (2+1)-dimensional spatial optical solitons in the adiabatic regime of the system is also discussed.

  12. Line positions, intensities and self-broadening coefficients for the ν5 band of methyl chloride

    International Nuclear Information System (INIS)

    Barbouchi Ramchani, A.; Jacquemart, D.; Dhib, M.; Aroui, H.

    2013-01-01

    High resolution Fourier transform spectra have been recorded around 6.9 μm at room temperature using a rapid scan Bruker IFS 120 HR interferometer (unapodized Bruker resolution=0.005 cm −1 ). Transitions of both 12 CH 3 35 Cl and 12 CH 3 37 Cl isotopologues belonging to the ν 5 perpendicular band have been studied. Line positions, intensities, and self-broadening coefficients have been retrieved using a multispectrum fitting procedure that allowed to fit simultaneously the whole set of experimental spectra recorded at various pressures of CH 3 Cl. The wavenumber calibration has been performed using the frequencies of CO 2 transitions. The transition dipole moments squared have been determined for each measured line and the whole set of measurements has been compared with previous measurements and with values from HITRAN and GEISA databases. The rotational J and K dependencies of the self-broadening coefficients have been clearly observed and modeled using empirical polynomial expansions. The average accuracy of the line parameters obtained in this work has been estimated to be between 0.1×10 −3 and 1×10 −3 cm −1 for line positions, between 2% and 5% for line intensities and between 5% and 10% for self-broadening coefficients depending on the transitions. -- Highlights: ► Fourier-transform spectra of the ν 5 band of CH 3 Cl at room temperature. ► Measurements of line positions, intensities and self-broadening coefficients. ► Analysis of the J- and K-rotational dependences of self-widths. ► Comparisons with literature

  13. Peak broadening in paper chromatography and related techniques : III. Peak broadening in thin-layer chromatography on cellulose powder

    NARCIS (Netherlands)

    Ligny, C.L. de; Remijnse, A.G.

    1968-01-01

    The mechanism of peak broadening in thin-layer chromatography on cellulose powder was investigated by comparing the peak widths obtained in chromatography with those caused only by diffusion in the cellulose powder, for a set of amino acids of widely differing RF values and six kinds of cellulose

  14. Quantitative Analysis of Intra Urban Growth Modeling using socio economic agents by combining cellular automata model with agent based model

    Science.gov (United States)

    Singh, V. K.; Jha, A. K.; Gupta, K.; Srivastav, S. K.

    2017-12-01

    Recent studies indicate that there is a significant improvement in the urban land use dynamics through modeling at finer spatial resolutions. Geo-computational models such as cellular automata and agent based model have given evident proof regarding the quantification of the urban growth pattern with urban boundary. In recent studies, socio- economic factors such as demography, education rate, household density, parcel price of the current year, distance to road, school, hospital, commercial centers and police station are considered to the major factors influencing the Land Use Land Cover (LULC) pattern of the city. These factors have unidirectional approach to land use pattern which makes it difficult to analyze the spatial aspects of model results both quantitatively and qualitatively. In this study, cellular automata model is combined with generic model known as Agent Based Model to evaluate the impact of socio economic factors on land use pattern. For this purpose, Dehradun an Indian city is selected as a case study. Socio economic factors were collected from field survey, Census of India, Directorate of economic census, Uttarakhand, India. A 3X3 simulating window is used to consider the impact on LULC. Cellular automata model results are examined for the identification of hot spot areas within the urban area and agent based model will be using logistic based regression approach where it will identify the correlation between each factor on LULC and classify the available area into low density, medium density, high density residential or commercial area. In the modeling phase, transition rule, neighborhood effect, cell change factors are used to improve the representation of built-up classes. Significant improvement is observed in the built-up classes from 84 % to 89 %. However after incorporating agent based model with cellular automata model the accuracy improved from 89 % to 94 % in 3 classes of urban i.e. low density, medium density and commercial classes

  15. Wavefront cellular learning automata.

    Science.gov (United States)

    Moradabadi, Behnaz; Meybodi, Mohammad Reza

    2018-02-01

    This paper proposes a new cellular learning automaton, called a wavefront cellular learning automaton (WCLA). The proposed WCLA has a set of learning automata mapped to a connected structure and uses this structure to propagate the state changes of the learning automata over the structure using waves. In the WCLA, after one learning automaton chooses its action, if this chosen action is different from the previous action, it can send a wave to its neighbors and activate them. Each neighbor receiving the wave is activated and must choose a new action. This structure for the WCLA is necessary in many dynamic areas such as social networks, computer networks, grid computing, and web mining. In this paper, we introduce the WCLA framework as an optimization tool with diffusion capability, study its behavior over time using ordinary differential equation solutions, and present its accuracy using expediency analysis. To show the superiority of the proposed WCLA, we compare the proposed method with some other types of cellular learning automata using two benchmark problems.

  16. Wavefront cellular learning automata

    Science.gov (United States)

    Moradabadi, Behnaz; Meybodi, Mohammad Reza

    2018-02-01

    This paper proposes a new cellular learning automaton, called a wavefront cellular learning automaton (WCLA). The proposed WCLA has a set of learning automata mapped to a connected structure and uses this structure to propagate the state changes of the learning automata over the structure using waves. In the WCLA, after one learning automaton chooses its action, if this chosen action is different from the previous action, it can send a wave to its neighbors and activate them. Each neighbor receiving the wave is activated and must choose a new action. This structure for the WCLA is necessary in many dynamic areas such as social networks, computer networks, grid computing, and web mining. In this paper, we introduce the WCLA framework as an optimization tool with diffusion capability, study its behavior over time using ordinary differential equation solutions, and present its accuracy using expediency analysis. To show the superiority of the proposed WCLA, we compare the proposed method with some other types of cellular learning automata using two benchmark problems.

  17. 77 FR 2031 - Proposed Information Collection; Comment Request; Market Research To Broaden and Deepen U.S...

    Science.gov (United States)

    2012-01-13

    ... (Census), and Export-Import Bank (Ex-Im) have formed a project team to conduct market segmentation research and analysis. The market segmentation is a systematic approach for identifying clusters of... Request; Market Research To Broaden and Deepen U.S. Exporter Base AGENCY: International Trade...

  18. In Vitro Experimental Model for the Long-Term Analysis of Cellular Dynamics During Bronchial Tree Development from Lung Epithelial Cells.

    Science.gov (United States)

    Hagiwara, Masaya; Maruta, Naomichi; Marumoto, Moegi

    2017-06-01

    Lung branching morphogenesis has been studied for decades, but the underlying developmental mechanisms are still not fully understood. Cellular movements dynamically change during the branching process, but it is difficult to observe long-term cellular dynamics by in vivo or tissue culture experiments. Therefore, developing an in vitro experimental model of bronchial tree would provide an essential tool for developmental biology, pathology, and systems biology. In this study, we succeeded in reconstructing a bronchial tree in vitro by using primary human bronchial epithelial cells. A high concentration gradient of bronchial epithelial cells was required for branching initiation, whereas homogeneously distributed endothelial cells induced the formation of successive branches. Subsequently, the branches grew in size to the order of millimeter. The developed model contains only two types of cells and it facilitates the analysis of lung branching morphogenesis. By taking advantage of our experimental model, we carried out long-term time-lapse observations, which revealed self-assembly, collective migration with leader cells, rotational motion, and spiral motion of epithelial cells in each developmental event. Mathematical simulation was also carried out to analyze the self-assembly process and it revealed simple rules that govern cellular dynamics. Our experimental model has provided many new insights into lung development and it has the potential to accelerate the study of developmental mechanisms, pattern formation, left-right asymmetry, and disease pathogenesis of the human lung.

  19. Mapping whole-brain activity with cellular resolution by light-sheet microscopy and high-throughput image analysis (Conference Presentation)

    Science.gov (United States)

    Silvestri, Ludovico; Rudinskiy, Nikita; Paciscopi, Marco; Müllenbroich, Marie Caroline; Costantini, Irene; Sacconi, Leonardo; Frasconi, Paolo; Hyman, Bradley T.; Pavone, Francesco S.

    2016-03-01

    Mapping neuronal activity patterns across the whole brain with cellular resolution is a challenging task for state-of-the-art imaging methods. Indeed, despite a number of technological efforts, quantitative cellular-resolution activation maps of the whole brain have not yet been obtained. Many techniques are limited by coarse resolution or by a narrow field of view. High-throughput imaging methods, such as light sheet microscopy, can be used to image large specimens with high resolution and in reasonable times. However, the bottleneck is then moved from image acquisition to image analysis, since many TeraBytes of data have to be processed to extract meaningful information. Here, we present a full experimental pipeline to quantify neuronal activity in the entire mouse brain with cellular resolution, based on a combination of genetics, optics and computer science. We used a transgenic mouse strain (Arc-dVenus mouse) in which neurons which have been active in the last hours before brain fixation are fluorescently labelled. Samples were cleared with CLARITY and imaged with a custom-made confocal light sheet microscope. To perform an automatic localization of fluorescent cells on the large images produced, we used a novel computational approach called semantic deconvolution. The combined approach presented here allows quantifying the amount of Arc-expressing neurons throughout the whole mouse brain. When applied to cohorts of mice subject to different stimuli and/or environmental conditions, this method helps finding correlations in activity between different neuronal populations, opening the possibility to infer a sort of brain-wide 'functional connectivity' with cellular resolution.

  20. Dependence of inhomogeneous vibrational linewidth broadening on attractive forces from local liquid number densities

    International Nuclear Information System (INIS)

    George, S.M.; Harris, C.B.

    1982-01-01

    The dependence of inhomogeneous vibrational linewidth broadening on attractive forces form slowly varying local liquid number densities is examined. The recently developed Schweizer--Chandler theory of vibrational dephasing is used to compute absolute inhomogeneous broadening linewidths. The computed linewidths are compared to measured inhomogeneous broadening linewidths determined using picosecond vibrational dephasing experiments. There is a similarity between correlations of the Schweizer--Chandler and George--Auweter--Harris predicted inhomogeneous broadening linewidths and the measured inhomogeneous broadening linewidths. For the methyl stretches under investigation, this correspondence suggests that the width of the number density distribution in the liquid determines the relative inhomogeneous broadening magnitudes

  1. Doppler broadening measurements in FRX-C/LSM

    International Nuclear Information System (INIS)

    Baron, M.H.; Chrien, R.E.

    1989-01-01

    Measurements obtained in situ during field reversed configuration (FRC) formation show that the Doppler broadening ion temperature T CV is larger by a factor of two or more than the ion temperature T i derived from pressure balance and Thomson scattering. After a time comparable to an ion-ion equilibrium time, T CV and T i come into agreement with each other. An exception to this picture occurs in the lowest fill pressure condition (2 mtorr), for which T CV > T i is maintained throughout the FRC lifetime. Earlier Doppler broadening measurements in FRX-B and FRX-C also showed persistent, anomalously high T CV at low fill pressure. The initially high values of T CV are probably caused by convective motion generated by the radial implosion. The low fill pressure results suggest an enhanced ohmic power input to the carbon ions. 7 refs., 3 figs

  2. Positive emotions and the social broadening effects of Barack Obama.

    Science.gov (United States)

    Ong, Anthony D; Burrow, Anthony L; Fuller-Rowell, Thomas E

    2012-10-01

    Past experiments have demonstrated that the cognitive broadening produced by positive emotions may extend to social contexts. Building on this evidence, we hypothesized that positive emotions triggered by thinking about Barack Obama may broaden and expand people's sense of self to include others. Results from an expressive-writing study demonstrated that African American college students prompted to write about Obama immediately prior to and after the 2008 presidential election used more plural self-references, fewer other-references, and more social references. Mediation analyses revealed that writing about Obama increased positive emotions, which in turn increased the likelihood that people thought in terms of more-inclusive superordinate categories (we and us rather than they and them). Implications of these findings for the role of positive emotions in perspective-taking and intergroup relations are considered.

  3. The Frequency Evolution of Interstellar Pulse Broadening from Radio Pulsars

    Science.gov (United States)

    Löhmer, O.; Mitra, D.; Gupta, Y.; Kramer, M.; Ahuja, A.

    2004-10-01

    Using radio pulsars as probes of the interstellar medium (ISM) we study the frequency evolution of interstellar scattering. The frequency dependence of scatter broadening times, τsc, for most of the pulsars with low and intermediate dispersion measures (DM ≲ 400 pc cm-3) is consistent with the Kolmogorov spectrum of electron density fluctuations in a turbulent medium. In contrast, the measured τsc's for highly dispersed pulsars in the central region of the Galaxy are larger than expected and show a spectrum which is flatter than the Kolmogorov law. We analyse the first measurements of spectral indices of scatter broadening over the full known DM range and discuss possible explanations for the anomalous scattering behaviour along peculiar lines of sight (LOS).

  4. A method to enhance the resolution of broadened spectra

    Energy Technology Data Exchange (ETDEWEB)

    Cabral P, A.; Jimenez D, H.; Torres V, M.; Azorin N, J.; Gutierrez C, A.; Gonzalez M, P.R.; Lopez E, J. [ININ, 52045 Ocoyoacac, Estado de Mexico (Mexico); Fuentes Z, G.A.; Cordoba, A. [UAM-I, 09340 Mexico D.F. (Mexico)

    1992-02-15

    A deconvolution method to analyze line overlapping broadened spectra is presented. Two approximation expressions from which the user can remove, either a Lorentzian or a Gaussian line from observed spectra are utilized. Moessbauer spectra, EPR and Thermoluminescence spectroscopies are analyzed. It is shown that in each case, the de convolved spectrum may provide valuable data to get a much closer characterization of a substance. (Author)

  5. A method to enhance the resolution of broadened spectra

    International Nuclear Information System (INIS)

    Cabral P, A.; Jimenez D, H.; Torres V, M.; Azorin N, J.; Gutierrez C, A.; Gonzalez M, P.R.; Lopez E, J.; Fuentes Z, G.A.; Cordoba, A.

    1992-02-01

    A deconvolution method to analyze line overlapping broadened spectra is presented. Two approximation expressions from which the user can remove, either a Lorentzian or a Gaussian line from observed spectra are utilized. Moessbauer spectra, EPR and Thermoluminescence spectroscopies are analyzed. It is shown that in each case, the de convolved spectrum may provide valuable data to get a much closer characterization of a substance. (Author)

  6. Stark broadening in hot, dense laser-produced plasmas

    International Nuclear Information System (INIS)

    Tighe, R.J.; Hooper, C.F. Jr.

    1976-01-01

    Broadened Lyman-α x-ray lines from neon X and argon XVIII radiators, which are immersed in a hot, dense deuterium or deuterium-tritium plasma, are discussed. In particular, these lines are analyzed for several temperature-density cases, characteristic of laser-produced plasmas; special attention paid to the relative importance of ion, electron, and Doppler effects. Static ion microfield distribution functions are tabulated

  7. Correlations in the quantum theory of plasma line broadening

    International Nuclear Information System (INIS)

    Dufty, J.W.; Boercker, D.B.

    1976-01-01

    A unified theory of plasma line broadening is obtained from a quantum kinetic equation, paralleling existing results for a classical plasma. The atom-electron interactions are shielded by equilibrium electron correlation functions and a frequency dependent dielectric function. A 'ring' approximation is used to replace the classical plasma parameter expansion, for typical laboratory conditions. Atom-electron correlations are included as well as electron-electron correlations. (author)

  8. BROADENING OF BALMER LINES FOR HIGH QUANTUM NUMBER

    Energy Technology Data Exchange (ETDEWEB)

    Armstrong, B. H.

    1963-10-15

    It is shown that the impact theory breakdown at sufficiently large distances from the line center in effect lowers the principle quantum number at which electron broadening might otherwise be assumed to dominate. Since the impact theory breaks down and effectively the impact widths decrease progressively for the line components more distant from the center, the contributions of the components to the folding integral decrease rapidly except at their own positions. (R.E.U.)

  9. Pion broadening and low-mass dilepton production

    International Nuclear Information System (INIS)

    Schulze, H.-J.; Blaschke, D.

    2002-01-01

    Mass and transverse momentum spectra of dileptons produced in Pb + Au (158 GeV/u) collisions within a pion annihilation model are determined. A fit to the data requires simultaneous mass reduction and broadening of the in-medium rho propagator. The introduction of a finite pion width, as required within self-consistent approaches to the interacting pion gas, further improves the agreement with the data

  10. Systematic genetic array analysis links the Saccharomyces cerevisiae SAGA/SLIK and NuA4 component Tra1 to multiple cellular processes

    Directory of Open Access Journals (Sweden)

    Andrews Brenda

    2008-07-01

    Full Text Available Abstract Background Tra1 is an essential 437-kDa component of the Saccharomyces cerevisiae SAGA/SLIK and NuA4 histone acetyltransferase complexes. It is a member of a group of key signaling molecules that share a carboxyl-terminal domain related to phosphatidylinositol-3-kinase but unlike many family members, it lacks kinase activity. To identify genetic interactions for TRA1 and provide insight into its function we have performed a systematic genetic array analysis (SGA on tra1SRR3413, an allele that is defective in transcriptional regulation. Results The SGA analysis revealed 114 synthetic slow growth/lethal (SSL interactions for tra1SRR3413. The interacting genes are involved in a range of cellular processes including gene expression, mitochondrial function, and membrane sorting/protein trafficking. In addition many of the genes have roles in the cellular response to stress. A hierarchal cluster analysis revealed that the pattern of SSL interactions for tra1SRR3413 most closely resembles deletions of a group of regulatory GTPases required for membrane sorting/protein trafficking. Consistent with a role for Tra1 in cellular stress, the tra1SRR3413 strain was sensitive to rapamycin. In addition, calcofluor white sensitivity of the strain was enhanced by the protein kinase inhibitor staurosporine, a phenotype shared with the Ada components of the SAGA/SLIK complex. Through analysis of a GFP-Tra1 fusion we show that Tra1 is principally localized to the nucleus. Conclusion We have demonstrated a genetic association of Tra1 with nuclear, mitochondrial and membrane processes. The identity of the SSL genes also connects Tra1 with cellular stress, a result confirmed by the sensitivity of the tra1SRR3413 strain to a variety of stress conditions. Based upon the nuclear localization of GFP-Tra1 and the finding that deletion of the Ada components of the SAGA complex result in similar phenotypes as tra1SRR3413, we suggest that the effects of tra1SRR3413

  11. Broadening failure rate distributions in PRA uncertainty analyses

    International Nuclear Information System (INIS)

    Martz, H.F.

    1984-01-01

    Several recent nuclear power plant probabilistic risk assessments (PRAs) have utilized broadened Reactor Safety Study (RSS) component failure rate population variability curves to compensate for such things as expert overvaluation bias in the estimates upon which the curves are based. A simple two-components of variation empirical Bayes model is proposed for use in estimating the between-expert variability curve in the presence of such biases. Under certain conditions this curve is a population variability curve. Comparisons are made with the existing method. The popular procedure appears to be generally much more conservative than the empirical Bayes method in removing such biases. In one case the broadened curve based on the popular method is more than two orders of magnitude broader than the empirical Bayes curve. In another case it is found that the maximum justifiable degree of broadening of the RSS curve is to increase α from 5% to 12%, which is significantly less than 20% value recommended in the popular approach. 15 references, 1 figure, 5 tables

  12. Importance of Doppler broadening in Compton scatter imaging techniques

    Science.gov (United States)

    Rao, Donepudi V.; Takeda, Tohoru; Itai, Yuji; Seltzer, S. M.; Hubbell, John H.; Zeniya, Tsutomu; Akatsuka, Takao; Cesareo, Roberto; Brunetti, Antonio; Gigante, Giovanni E.

    2001-12-01

    Compton scattering is a potential tool for the determination of bone mineral content or tissue density for dose planning purposes, and requires knowledge of the energy distribution of the X-rays through biological materials of medical interest in the X-ray and (gamma) -ray region. The energy distribution is utilized in a number of ways in diagnostic radiology, for example, in determining primary photon spectra, electron densities in separate volumes, and in tomography and imaging. The choice of the X-ray energy is more related to X-ray absorption, where as that of the scattering angle is more related to geometry. The evaluation of all the contributions are mandatory in Compton profile measurements and is important in X-ray imaging systems in order to achieve good results. In view of this, Compton profile cross-sections for few biological materials are estimated at nineteen K(alpha) X-ray energies and 60 keV (Am-241) photons. Energy broadening, geometrical broadening from 1 to 180 degree(s), FWHM of J(Pz) and FWHM of Compton energy broadening has been evaluated at various incident photon energies. These values are estimated around the centroid of the Compton profile with an energy interval of 0.1 keV and 1.0 keV for 60 keV photons. The interaction cross sections for the above materials are estimated using fractions-by-weight of the constituent elements. Input data for these tables are purely theoretical.

  13. Search for Magnetically Broadened Cascade Emission from Blazars with VERITAS

    Energy Technology Data Exchange (ETDEWEB)

    Archambault, S.; Griffin, S. [Physics Department, McGill University, Montreal, QC H3A 2T8 (Canada); Archer, A.; Bugaev, V. [Department of Physics, Washington University, St. Louis, MO 63130 (United States); Benbow, W.; Cerruti, M. [Fred Lawrence Whipple Observatory, Harvard-Smithsonian Center for Astrophysics, Amado, AZ 85645 (United States); Buchovecky, M. [Department of Physics and Astronomy, University of California, Los Angeles, CA 90095 (United States); Connolly, M. P. [School of Physics, National University of Ireland Galway, University Road, Galway (Ireland); Cui, W.; Finley, J. P. [Department of Physics and Astronomy, Purdue University, West Lafayette, IN 47907 (United States); Falcone, A. [Department of Astronomy and Astrophysics, 525 Davey Lab, Pennsylvania State University, University Park, PA 16802 (United States); Alonso, M. Fernández [Instituto de Astronomía y Física del Espacio (IAFE, CONICET-UBA), CC 67—Suc. 28, (C1428ZAA) Ciudad Autónoma de Buenos Aires (Argentina); Fleischhack, H.; Hütten, M. [DESY, Platanenallee 6, D-15738 Zeuthen (Germany); Fortson, L. [School of Physics and Astronomy, University of Minnesota, Minneapolis, MN 55455 (United States); Furniss, A. [Department of Physics, California State University—East Bay, Hayward, CA 94542 (United States); Hervet, O.; Johnson, C. A. [Santa Cruz Institute for Particle Physics and Department of Physics, University of California, Santa Cruz, CA 95064 (United States); Holder, J. [Department of Physics and Astronomy and the Bartol Research Institute, University of Delaware, Newark, DE 19716 (United States); Humensky, T. B., E-mail: elisa.pueschel@ucd.ie, E-mail: weisgarber@physics.wisc.edu [Physics Department, Columbia University, New York, NY 10027 (United States); and others

    2017-02-01

    We present a search for magnetically broadened gamma-ray emission around active galactic nuclei (AGNs), using VERITAS observations of seven hard-spectrum blazars. A cascade process occurs when multi-TeV gamma-rays from an AGN interact with extragalactic background light (EBL) photons to produce electron–positron pairs, which then interact with cosmic microwave background photons via inverse-Compton scattering to produce gamma-rays. Due to the deflection of the electron–positron pairs, a non-zero intergalactic magnetic field (IGMF) would potentially produce detectable effects on the angular distribution of the cascade emission. In particular, an angular broadening compared to the unscattered emission could occur. Through non-detection of angularly broadened emission from 1ES 1218+304, the source with the largest predicted cascade fraction, we exclude a range of IGMF strengths around 10{sup −14} G at the 95% confidence level. The extent of the exclusion range varies with the assumptions made about the intrinsic spectrum of 1ES 1218+304 and the EBL model used in the simulation of the cascade process. All of the sources are used to set limits on the flux due to extended emission.

  14. On-the-fly doppler broadening for Monte Carlo codes

    International Nuclear Information System (INIS)

    Yesilyurt, G.; Martin, W. R.; Brown, F. B.

    2009-01-01

    A methodology to allow on-the-fly Doppler broadening of neutron cross sections for use in Monte Carlo codes has been developed. The Monte Carlo code only needs to store 0 K cross sections for each isotope and the method will broaden the 0 K cross sections for any isotope in the library to any temperature in the range 77 K-3200 K. The methodology is based on a combination of Taylor series expansions and asymptotic series expansions. The type of series representation was determined by investigating the temperature dependence of U3o8 resonance cross sections in three regions: near the resonance peaks, mid-resonance, and the resonance wings. The coefficients for these series expansions were determined by a regression over the energy and temperature range of interest. Since the resonance parameters are a function of the neutron energy and target nuclide, the ψ and χ functions in the Adler-Adler multi-level resonance model can be represented by series expansions in temperature only, allowing the least number of terms to approximate the temperature dependent cross sections within a given accuracy. The comparison of the broadened cross sections using this methodology with the NJOY cross sections was excellent over the entire temperature range (77 K-3200 K) and energy range. A Monte Carlo code was implemented to apply the combined regression model and used to estimate the additional computing cost which was found to be less than <1%. (authors)

  15. Whole lesion histogram analysis of meningiomas derived from ADC values. Correlation with several cellularity parameters, proliferation index KI 67, nucleic content, and membrane permeability.

    Science.gov (United States)

    Surov, Alexey; Hamerla, Gordian; Meyer, Hans Jonas; Winter, Karsten; Schob, Stefan; Fiedler, Eckhard

    2018-09-01

    To analyze several histopathological features and their possible correlations with whole lesion histogram analysis derived from ADC maps in meningioma. The retrospective study involved 36 patients with primary meningiomas. For every tumor, the following histogram analysis parameters of apparent diffusion coefficient (ADC) were calculated: ADC mean , ADC max , ADC min , ADC median , ADC mode , ADC percentiles: P10, P25, P75, P90, as well kurtosis, skewness, and entropy. All measures were performed by two radiologists. Proliferation index KI 67, minimal, maximal and mean cell count, total nucleic area, and expression of water channel aquaporin 4 (AQP4) were estimated. Spearman's correlation coefficient was used to analyze associations between investigated parameters. A perfect interobserver agreement for all ADC values (0.84-0.97) was identified. All ADC values correlated inversely with tumor cellularity with the strongest correlation between P10, P25 and mean cell count (-0.558). KI 67 correlated inversely with all ADC values except ADC min . ADC parameters did not correlate with total nucleic area. All ADC values correlated statistically significant with expression of AQP4. ADC histogram analysis is a valid method with an excellent interobserver agreement. Cellularity parameters and proliferation potential are associated with different ADC values. Membrane permeability may play a greater role for water diffusion than cell count and proliferation activity. Copyright © 2018 Elsevier Inc. All rights reserved.

  16. Towards modeling of random lasing in dye doped bio-organic based systems: ray-tracing and cellular automaton analysis

    Science.gov (United States)

    Mitus, A. C.; Stopa, P.; Zaklukiewicz, W.; Pawlik, G.; Mysliwiec, J.; Kajzar, F.; Rau, I.

    2015-08-01

    One of many photonic applications of biopolymers as functional materials is random lasing resulting from an incorporation of highly luminescent dyes into biopolymeric matrix, which leads to a random but coherent light scattering in amplifying medium. In spite of numerous theoretical and experimental studies the origin of the coherence is still not clear and various scenarios are discussed. In particular, inhomogeneity of biopolymeric layers can hypothetically promote the feedback in the scattering of the emitted light resulting in coherent and incoherent random lasing. In this paper we analyze the light scattering in a model system of scattering centers of circular shapes and various dimensions using ray-tracing techniques. In the second part, which has mostly a tutorial character, we present the approach to the study of random lasing using a cellular automaton model of Wiersma et al.

  17. Detection and Analysis of Cell Cycle-Associated APC/C-Mediated Cellular Ubiquitylation In Vitro and In Vivo.

    Science.gov (United States)

    Cedeño, Cesyen; La Monaca, Esther; Esposito, Mara; Gutierrez, Gustavo J

    2016-01-01

    The anaphase-promoting complex or cyclosome (APC/C) is one of the major orchestrators of the cell division cycle in mammalian cells. The APC/C acts as a ubiquitin ligase that triggers sequential ubiquitylation of a significant number of substrates which will be eventually degraded by proteasomes during major transitions of the cell cycle. In this chapter, we present accessible methodologies to assess both in in vitro conditions and in cellular systems ubiquitylation reactions mediated by the APC/C. In addition, we also describe techniques to evidence the changes in protein stability provoked by modulation of the activity of the APC/C. Finally, specific methods to analyze interactors or posttranslational modifications of particular APC/C subunits are also discussed. Given the crucial role played by the APC/C in the regulation of the cell cycle, this review only focuses on its action and effects in actively proliferating cells.

  18. Origami interleaved tube cellular materials

    International Nuclear Information System (INIS)

    Cheung, Kenneth C; Tachi, Tomohiro; Calisch, Sam; Miura, Koryo

    2014-01-01

    A novel origami cellular material based on a deployable cellular origami structure is described. The structure is bi-directionally flat-foldable in two orthogonal (x and y) directions and is relatively stiff in the third orthogonal (z) direction. While such mechanical orthotropicity is well known in cellular materials with extruded two dimensional geometry, the interleaved tube geometry presented here consists of two orthogonal axes of interleaved tubes with high interfacial surface area and relative volume that changes with fold-state. In addition, the foldability still allows for fabrication by a flat lamination process, similar to methods used for conventional expanded two dimensional cellular materials. This article presents the geometric characteristics of the structure together with corresponding kinematic and mechanical modeling, explaining the orthotropic elastic behavior of the structure with classical dimensional scaling analysis. (paper)

  19. Origami interleaved tube cellular materials

    Science.gov (United States)

    Cheung, Kenneth C.; Tachi, Tomohiro; Calisch, Sam; Miura, Koryo

    2014-09-01

    A novel origami cellular material based on a deployable cellular origami structure is described. The structure is bi-directionally flat-foldable in two orthogonal (x and y) directions and is relatively stiff in the third orthogonal (z) direction. While such mechanical orthotropicity is well known in cellular materials with extruded two dimensional geometry, the interleaved tube geometry presented here consists of two orthogonal axes of interleaved tubes with high interfacial surface area and relative volume that changes with fold-state. In addition, the foldability still allows for fabrication by a flat lamination process, similar to methods used for conventional expanded two dimensional cellular materials. This article presents the geometric characteristics of the structure together with corresponding kinematic and mechanical modeling, explaining the orthotropic elastic behavior of the structure with classical dimensional scaling analysis.

  20. Augmented cartilage regeneration by implantation of cellular versus acellular implants after bone marrow stimulation: a systematic review and meta-analysis of animal studies

    Directory of Open Access Journals (Sweden)

    Michiel W. Pot

    2017-10-01

    Full Text Available Bone marrow stimulation may be applied to regenerate focal cartilage defects, but generally results in transient clinical improvement and formation of fibrocartilage rather than hyaline cartilage. Tissue engineering and regenerative medicine strive to develop new solutions to regenerate hyaline cartilage tissue. This systematic review and meta-analysis provides a comprehensive overview of current literature and assesses the efficacy of articular cartilage regeneration by implantation of cell-laden versus cell-free biomaterials in the knee and ankle joint in animals after bone marrow stimulation. PubMed and EMBASE (via OvidSP were systematically searched using tissue engineering, cartilage and animals search strategies. Included were primary studies in which cellular and acellular biomaterials were implanted after applying bone marrow stimulation in the knee or ankle joint in healthy animals. Study characteristics were tabulated and outcome data were collected for meta-analysis for studies applying semi-quantitative histology as outcome measure (117 studies. Cartilage regeneration was expressed on an absolute 0–100% scale and random effects meta-analyses were performed. Implantation of cellular biomaterials significantly improved cartilage regeneration by 18.6% compared to acellular biomaterials. No significant differences were found between biomaterials loaded with stem cells and those loaded with somatic cells. Culture conditions of cells did not affect cartilage regeneration. Cartilage formation was reduced with adipose-derived stem cells compared to other cell types, but still improved compared to acellular scaffolds. Assessment of the risk of bias was impaired due to incomplete reporting for most studies. Implantation of cellular biomaterials improves cartilage regeneration compared to acellular biomaterials.

  1. Augmented cartilage regeneration by implantation of cellular versus acellular implants after bone marrow stimulation: a systematic review and meta-analysis of animal studies.

    Science.gov (United States)

    Pot, Michiel W; van Kuppevelt, Toin H; Gonzales, Veronica K; Buma, Pieter; IntHout, Joanna; de Vries, Rob B M; Daamen, Willeke F

    2017-01-01

    Bone marrow stimulation may be applied to regenerate focal cartilage defects, but generally results in transient clinical improvement and formation of fibrocartilage rather than hyaline cartilage. Tissue engineering and regenerative medicine strive to develop new solutions to regenerate hyaline cartilage tissue. This systematic review and meta-analysis provides a comprehensive overview of current literature and assesses the efficacy of articular cartilage regeneration by implantation of cell-laden versus cell-free biomaterials in the knee and ankle joint in animals after bone marrow stimulation. PubMed and EMBASE (via OvidSP) were systematically searched using tissue engineering, cartilage and animals search strategies. Included were primary studies in which cellular and acellular biomaterials were implanted after applying bone marrow stimulation in the knee or ankle joint in healthy animals. Study characteristics were tabulated and outcome data were collected for meta-analysis for studies applying semi-quantitative histology as outcome measure (117 studies). Cartilage regeneration was expressed on an absolute 0-100% scale and random effects meta-analyses were performed. Implantation of cellular biomaterials significantly improved cartilage regeneration by 18.6% compared to acellular biomaterials. No significant differences were found between biomaterials loaded with stem cells and those loaded with somatic cells. Culture conditions of cells did not affect cartilage regeneration. Cartilage formation was reduced with adipose-derived stem cells compared to other cell types, but still improved compared to acellular scaffolds. Assessment of the risk of bias was impaired due to incomplete reporting for most studies. Implantation of cellular biomaterials improves cartilage regeneration compared to acellular biomaterials.

  2. On the Application of Stark Broadening Data Determined with a Semiclassical Perturbation Approach

    Directory of Open Access Journals (Sweden)

    Milan S. Dimitrijević

    2014-08-01

    Full Text Available The significance of Stark broadening data for problems in astrophysics, physics, as well as for technological plasmas is discussed and applications of Stark broadening parameters calculated using a semiclassical perturbation method are analyzed.

  3. Spectral line shape simulation for electron stark-broadening of ion emitters in plasmas

    International Nuclear Information System (INIS)

    Dufour, Emmanuelle; Calisti, Annette; Talin, Bernard; Gigosos, Marco A.; Gonzalez, Manuel A.; Dufty, Jim W.

    2002-01-01

    Electron broadening for ions in plasmas is investigated in the framework of a simplified semi-classical model involving an ionic emitter imbedded in an electron gas. A regularized Coulomb potential that removes the divergence at short distances is postulated for the ion-electron interaction. Line shape simulations based on Molecular Dynamics for the ion impurity and the electrons, accounting for all the correlations, are reported. Comparisons with line shapes obtained with a quasi-particle model show expected correlation effects. Through an analysis of the results with the line shape code PPP, it is inferred that the correlation effect results mainly from the microfield dynamic properties

  4. Pre-clinical analysis of changes in intra-cellular biochemistry of glioblastoma multiforme (GBM) cells due to c-Myc silencing.

    Science.gov (United States)

    Rajagopalan, Vishal; Vaidyanathan, Muthukumar; Janardhanam, Vanisree Arambakkam; Bradner, James E

    2014-10-01

    Glioblastoma Multiforme (GBM) is an aggressive form of brain Tumor that has few cures. In this study, we analyze the anti-proliferative effects of a new molecule JQ1 against GBMs induced in Wistar Rats. JQ1 is essentially a Myc inhibitor. c-Myc is also known for altering the biochemistry of a tumor cell. Therefore, the study is intended to analyze certain other oncogenes associated with c-Myc and also the change in cellular biochemistry upon c-Myc inhibition. The quantitative analysis of gene expression gave a co-expressive pattern for all the three genes involved namely; c-Myc, Bcl-2, and Akt. The cellular biochemistry analysis by transmission electron microscopy revealed high glycogen and lipid aggregation in Myc inhibited cells and excessive autophagy. The study demonstrates the role of c-Myc as a central metabolic regulator and Bcl-2 and Akt assisting in extending c-Myc half-life as well as in regulation of autophagy, so as to regulate cell survival on the whole. The study also demonstrates that transient treatment by JQ1 leads to aggressive development of tumor and therefore, accelerating death, emphasizing the importance of dosage fixation, and duration for clinical use in future.

  5. Trojan-horse mechanism in the cellular uptake of silver nanoparticles verified by direct intra- and extracellular silver speciation analysis.

    Science.gov (United States)

    Hsiao, I-Lun; Hsieh, Yi-Kong; Wang, Chu-Fang; Chen, I-Chieh; Huang, Yuh-Jeen

    2015-03-17

    The so-called "Trojan-horse" mechanism, in which nanoparticles are internalized within cells and then release high levels of toxic ions, has been proposed as a behavior in the cellular uptake of Ag nanoparticles (AgNPs). While several reports claim to have proved this mechanism by measuring AgNPs and Ag ions (I) in cells, it cannot be fully proven without examining those two components in both intra- and extracellular media. In our study, we found that even though cells take up AgNPs similarly to (microglia (BV-2)) or more rapidly than (astrocyte (ALT)) Ag (I), the ratio of AgNPs to total Ag (AgNPs+Ag (I)) in both cells was lower than that in outside media. It could be explained that H2O2, a major intracellular reactive oxygen species (ROS), reacts with AgNPs to form more Ag (I). Moreover, the major speciation of Ag (I) in cells was Ag(cysteine) and Ag(cysteine)2, indicating the possible binding of monomer cysteine or vital thiol proteins/peptides to Ag ions. Evidence we found indicates that the Trojan-horse mechanism really exists.

  6. Land-Cover Change Analysis and Simulation in Conakry (Guinea, Using Hybrid Cellular-Automata and Markov Model

    Directory of Open Access Journals (Sweden)

    Arafan Traore

    2018-04-01

    Full Text Available In this study, land-cover change in the capital Conakry of Guinea was simulated using the integrated Cellular Automata and Markov model (CA-Markov in the Geographic Information System (GIS and Remote Sensing (RS. Historical land-cover change information was derived from 1986, 2000 and 2016 Landsat data. Using the land-cover change maps of 1986 and 2000, the land-cover change map for 2016 was simulated based on the Markov model in IDRISSI software (Clark University, Worcester, MA, USA. The simulated result was compared with the 2016 land-cover map for validation using the Relative Operating Characteristic (ROC. The ROC result showed a very strong agreement between the two maps. From this result, the land-cover change map for 2025 was simulated using CA-Markov model. The result has indicated that the proportion of the urban area was 49% in 2016, and it is expected to increase to 52% by 2025, while vegetation will decrease from 35% in 2016 to 32% in 2025. This study suggests that the rapid land-cover change has been led by both rapid population growth and extreme poverty in rural areas, which will result in migration into Conakry. The results of this study will provide bases for assessing the sustainability and the management of the urban area and for taking actions to mitigate the degradation of the urban environment.

  7. Molecular and cellular mechanisms of tight junction dysfunction in the irritable bowel syndrome.

    Science.gov (United States)

    Cheng, Peng; Yao, Jianning; Wang, Chunfeng; Zhang, Lianfeng; Kong, Wuming

    2015-09-01

    The pathophysiological mechanisms of the irritable bowel syndrome (IBS), one of the most prevalent gastrointestinal disorders, are complex and have not been fully elucidated. The present study aimed to investigate the molecular and cellular mechanisms of tight junction (TJ) dysfunction in IBS. Intestinal tissues of IBS and non‑IBS patients were examined to observe cellular changes by cell chemical tracer electron microscopy and transmission electron microscopy, and intestinal claudin‑1 protein was detected by immunohistochemistry, western blot analysis and fluorescence quantitative polymerase chain reaction. Compared with the control group, TJ broadening and the tracer extravasation phenomenon were observed in the diarrhea‑predominant IBS group, and a greater number of neuroendocrine cells and mast cells filled with high‑density particles in the endocrine package pulp as well as a certain extent of vacuolization were present. The expression of claudin‑1 in diarrhea‑predominant IBS patients was decreased, while it was increased in constipation‑predominant IBS patients. In conclusion, the results of the present study indicated that changes in cellular structure and claudin‑1 levels were associated with Tjs in IBS.

  8. Broadening Participation in the Society for Integrative and Comparative Biology.

    Science.gov (United States)

    Wilga, Cheryl A D; Nishiguchi, Michele; Tsukimura, Brian

    2017-07-01

    The goal of the Society for Integrative and Comparative Biology's Broadening Participation Committee (SICB BPC) is to increase the number of underrepresented group (URG) members within the society and to expand their capabilities as future researchers and leaders within SICB. Our short-term 10-year goal was to increase the recruitment and retention of URG members in the society by 10%. Our long-term 25-year goal is to increase the membership of URG in the society through recruitment and retention until the membership demographic mirrors that of the US Census. Our plans to accomplish this included establishment of a formal standing committee, establishment of a moderate budget to support BPC activities, hosting professional development workshops, hosting diversity and mentor socials, and obtaining grant funds to supplement our budget. This paper documents broadening participation activities in the society, discusses the effectiveness of these activities, and evaluates BPC goals after 5 years of targeted funded activities. Over the past 5 years, the number of URG members rose by 5.2% to a total of 16.2%, members who report ethnicity and gender increased by 25.2% and 18%, respectively, and the number of members attending BPC activities has increased to 33% by 2016. SICB has made significant advances in broadening participation, not only through increased expenditures, but also with a commitment by its members and leadership to increase diversity. Most members realize that increasing diversity will both improve the Society's ability to develop different approaches to tackling problems within integrative biology, and help solve larger global issues that are evident throughout science and technology fields. In addition, having URG members as part of the executive committee would provide other URG members role models within the society, as well as have a voice in the leadership that represents diversity and inclusion for all scientists. © The Author 2017. Published by

  9. Theoretical evaluation of the Doppler broadening contribution to the angular resolution in CdZnTe Compton scattering detector

    International Nuclear Information System (INIS)

    Diaz Garcia, A.; Cabal Rodriguez, A.E.; Rubio Rodriguez, J. A.; Salicio Diez, J.; Perez Morales, J.M.; Vela Morales, O.; Willmott Zappacosta, C.; Van Espen, P.

    2011-01-01

    Electronically collimated Compton Cameras have been tested in Single Photon Emission Tomography (SPECT) systems instead of mechanically collimated gamma detectors in order to improve their limited sensitivity. One of the main factors that contribute to the worsening of the angular resolution and thus to the deterioration of the system spatial resolution is Doppler broadening. Double differential Klein-Nishina equation is used to consider the random movement of electron inside the crystal. It is important to perform this analysis for each particular material because is difficult to infer one simple Doppler broadening dependency of the atomic number Z. In high Z materials the internal electrons are strongly linked to the nucleus and therefore there can be found high momentums, but they represent just a small portion of the electrons that suffers Compton scattering. This work estimates the influence of the Doppler broadening in CdZnTe semiconductor for different incoming photon energies. For this means there are analyzed main Compton broadening processes in semiconductor Cd 0,8 Zn 0,2 Te with density ρ=5,85g/cm 3 . (Author)

  10. ON THE ANTI-CORRELATION BETWEEN SPECTRAL LINE BROADENING AND INTENSITY IN CORONAL STRUCTURES OBSERVED WITH EIS

    International Nuclear Information System (INIS)

    Scott, J. T.; Martens, P. C. H.

    2011-01-01

    The advance in spectral resolution of the Extreme Ultraviolet Imaging (EIS) spectrometer on board Hinode has allowed for more detailed analysis of coronal spectral lines. Large line broadening and blueshifted velocities have been found in the periphery of active region (AR) cores and near the footpoints of coronal loops. This line broadening is yet to be understood. We study the correlation of intensity and line width for entire ARs and sub-regions selected to include coronal features. The results show that although a slight positive correlation can be found when considering whole images, many sub-regions have a negative correlation between intensity and line width. Sections of a coronal loop display some of the largest anti-correlations found for this study with the increased line broadening occurring directly adjacent to the footpoint section of the loop structure, not at the footpoint itself. The broadened lines may be due to a second Doppler-shifted component that is separate from the main emitting feature such as a coronal loop, but related in their excitation. The small size of these features forces the considerations of investigator and instrumental effects. Preliminary analyses are shown that indicate the possibility of a point-spread function that is not azimuthally symmetric and may affect velocity and line profile measurements.

  11. Stark Broadening of Cr III Spectral Lines: DO White Dwarfs

    Directory of Open Access Journals (Sweden)

    Milan S. Dimitrijević

    2018-04-01

    Full Text Available Using the modified semiempirical method of Dimitrijević and Konjević, Stark widths have been calculated for six Cr III transitions, for an electron density of 10 17 cm ‒ 3 and for temperatures from 5000–80,000 K. Results have been used for the investigation of the influence of Stark broadening on spectral lines in cool DO white dwarf atmospheres. Calculated Stark widths will be implemented in the STARK-B database, which is also a part of the Virtual Atomic and Molecular Data Center (VAMDC.

  12. Approximation of the Doppler broadening function by Frobenius method

    International Nuclear Information System (INIS)

    Palma, Daniel A.P.; Martinez, Aquilino S.; Silva, Fernando C.

    2005-01-01

    An analytical approximation of the Doppler broadening function ψ(x,ξ) is proposed. This approximation is based on the solution of the differential equation for ψ(x,ξ) using the methods of Frobenius and the parameters variation. The analytical form derived for ψ(x,ξ) in terms of elementary functions is very simple and precise. It can be useful for applications related to the treatment of nuclear resonances mainly for the calculations of multigroup parameters and self-protection factors of the resonances, being the last used to correct microscopic cross-sections measurements by the activation technique. (author)

  13. The derivation of the Doppler broadening function using Frobenius method

    International Nuclear Information System (INIS)

    Palma, Daniel A.P.; Martinez, Aquilino S.; Silva, Fernando C.

    2006-01-01

    An analytical approximation of the Doppler broadening function ψ(ξ,x) is proposed. This approximation is based on the solution of the differential equation for ψ(ξ,x) using the methods of Frobenius and parameters variation. The analytical form derived for ψ(ξ,x) in terms of elementary functions is very simple and precise. It can be useful for applications related to the treatment of nuclear resonances, mainly for calculations of multigroup parameters and resonances self-protection factors, the latter being used to correct microscopic cross section measurements by the activation technique. (author)

  14. Theory of Moessbauer line broadening due to diffusion

    International Nuclear Information System (INIS)

    Schroeder, K.; Wolf, D.; Dederichs, P.H.

    1981-12-01

    We have calculated the line broadening of the Moessbauer line due to diffusion of Moessbauer atoms via single vacanices. We take into account the perturbation of vacancy jumps in the neighbourhood of an impurity Moessbauer atom (e.g. Fe in Al) using the 5-frequency model. The anisotropy of the line width is given by the Fourier transform of the final distribution of a Moessbauer atom after an encounter with a vacancy. This distribution is calculated by Monte Carlo computer simulation. 3 figures, 1 tables

  15. Strategies for broadening public involvement in space developments

    Science.gov (United States)

    Harris, Philip R.

    1992-01-01

    There is widespread public interest in and goodwill toward the space program. For NASA's plans for the next 25 years to be achieved, this public reservoir of support needs to be tapped and channeled. NASA endeavors have to reach out beyond the scientific, technological, and aerospace communities to foster wider participation in space exploration and exploitation. To broaden NASA support and spread out the financing of space activities, recommendations for consideration are offered in the area of economics, political, institutional, international, and managerial areas.

  16. Analysis of Epidermal Growth Factor Receptor Related Gene Expression Changes in a Cellular and Animal Model of Parkinson’s Disease

    Directory of Open Access Journals (Sweden)

    In-Su Kim

    2017-02-01

    Full Text Available We employed transcriptome analysis of epidermal growth factor receptor related gene expression changes in cellular and animal models of Parkinson’s disease (PD. We used a well-known Parkinsonian toxin 1-methyl-4-phenylpyridine (MPP+ to induce neuronal apoptosis in the human neuroblastoma SH-SY5Y cell line. The MPP+-treatment of SH-SY5Y cells was capable of inducing neuro-apoptosis, but it remains unclear what kinds of transcriptional genes are affected by MPP+ toxicity. Therefore the pathways that were significantly perturbed in MPP+ treated human neuroblastoma SH-SY5Y cells were identified based on genome-wide gene expression data at two time points (24 and 48 h. We found that the Epidermal Growth Factor Receptor (EGFR pathway-related genes showed significantly differential expression at all time points. The EGFR pathway has been linked to diverse cellular events such as proliferation, differentiation, and apoptosis. Further, to evaluate the functional significance of the altered EGFR related gene expression observed in MPP+-treated SH-SY5Y cells, the EGFR related GJB2 (Cx26 gene expression was analyzed in an MPP+-intoxicated animal PD model. Our findings identify that the EGFR signaling pathway and its related genes, such as Cx26, might play a significant role in dopaminergic (DAergic neuronal cell death during the process of neuro-apoptosis and therefore can be focused on as potential targets for therapeutic intervention.

  17. Positive mood broadens visual attention to positive stimuli.

    Science.gov (United States)

    Wadlinger, Heather A; Isaacowitz, Derek M

    2006-03-01

    In an attempt to investigate the impact of positive emotions on visual attention within the context of Fredrickson's (1998) broaden-and-build model, eye tracking was used in two studies to measure visual attentional preferences of college students (n=58, n=26) to emotional pictures. Half of each sample experienced induced positive mood immediately before viewing slides of three similarly-valenced images, in varying central-peripheral arrays. Attentional breadth was determined by measuring the percentage viewing time to peripheral images as well as by the number of visual saccades participants made per slide. Consistent with Fredrickson's theory, the first study showed that individuals induced into positive mood fixated more on peripheral stimuli than did control participants; however, this only held true for highly-valenced positive stimuli. Participants under induced positive mood also made more frequent saccades for slides of neutral and positive valence. A second study showed that these effects were not simply due to differences in emotional arousal between stimuli. Selective attentional broadening to positive stimuli may act both to facilitate later building of resources as well as to maintain current positive affective states.

  18. Improving Program Design and Assessment with Broadening Participation Resources

    Science.gov (United States)

    Siegfried, D.; Johnson, A.; Thomas, S. H.; Fauver, A.; Detrick, L.

    2012-12-01

    Many theoretical and research-based approaches suggest how to best use mentoring to enhance an undergraduate research program. The Institute for Broadening Participation's Pathways to Engineering and Pathways to Ocean Sciences projects synthesized a set of mentoring studies, theoretical sources, and other texts pertinent to undergraduate research program design into a suite of practical tools that includes an online mentoring manual, an online reference library of mentoring and diversity literature, and practical guides such as Using Social Media to Build Diversity in Your REU. The overall goal is to provide easy-to-access resources that can assist faculty and program directors in implementing or honing the mentoring elements in their research programs for undergraduates. IBP's Online Mentoring Manual addresses common themes, such as modeling, student self-efficacy, career development, retention and evaluation. The Online Diversity Reference Library provides a comprehensive, annotated selection of key policy documents, research studies, intervention studies, and other texts on broadening participation in science, technology, engineering and mathematics. IBP's suite of tools provides the theoretical underpinnings and research findings that can help leaders in education integrate site-appropriate mentoring elements into their educational programs. Program directors and faculty from a variety of program types and disciplines have benefitted from using the Manual and other resources. IBP continues the work of translating and synthesizing theory to practice and welcomes your participation and partnership in that effort.

  19. Cellular image classification

    CERN Document Server

    Xu, Xiang; Lin, Feng

    2017-01-01

    This book introduces new techniques for cellular image feature extraction, pattern recognition and classification. The authors use the antinuclear antibodies (ANAs) in patient serum as the subjects and the Indirect Immunofluorescence (IIF) technique as the imaging protocol to illustrate the applications of the described methods. Throughout the book, the authors provide evaluations for the proposed methods on two publicly available human epithelial (HEp-2) cell datasets: ICPR2012 dataset from the ICPR'12 HEp-2 cell classification contest and ICIP2013 training dataset from the ICIP'13 Competition on cells classification by fluorescent image analysis. First, the reading of imaging results is significantly influenced by one’s qualification and reading systems, causing high intra- and inter-laboratory variance. The authors present a low-order LP21 fiber mode for optical single cell manipulation and imaging staining patterns of HEp-2 cells. A focused four-lobed mode distribution is stable and effective in optical...

  20. ANALYSIS OF CELLULAR REACTION TO IFN-γ STIMULATION BY A SOFTWARE PACKAGE GeneExpressionAnalyser

    Directory of Open Access Journals (Sweden)

    A. V. Saetchnikov

    2014-01-01

    Full Text Available The software package GeneExpressionAnalyser for analysis of the DNA microarray experi-mental data has been developed. The algorithms of data analysis, differentially expressed genes and biological functions of the cell are described. The efficiency of the developed package is tested on the published experimental data devoted to the time-course research of the changes in the human cell un-der the influence of IFN-γ on melanoma. The developed software has a number of advantages over the existing software: it is free, has a simple and intuitive graphical interface, allows to analyze different types of DNA microarrays, contains a set of methods for complete data analysis and performs effec-tive gene annotation for a selected list of genes.

  1. The University Corporation for Atmospheric Research's Significant Opportunities in Atmospheric and Related Sciences (UCAR-SOARS) program: A paradigm case for a research based analysis of elements and attributes of a highly successful research experience for undergraduate (REU) program designed to broaden participation in STEM

    Science.gov (United States)

    Windham, T. L.

    2011-12-01

    REU (research experience for undergraduate) programs in science serve as a centerpiece for: recruitment improved learning, retention and increased graduation rates among students in STEM fields. Structured REUs are highly effective programs for broadening participation and remedying inequities, to increase and diversify the STEM talent pool and professional workforce. Now in its 16th year, SOARS is dedicated to broadening participation in the atmospheric and related sciences. SOARS is an undergraduate through graduate program built on the structure of: a summer research internship, mentoring by professional scientists, and a supportive learning community. SOARS is an exemplar. Its structure serves as a paradigm case for the recruitment, retention, and graduation of students from underserved populations. This research-based examination of SOARS explores its program elements and identifies attributes and practices that contribute to its impact and lasting outcomes.

  2. Radiation, nitric oxide and cellular death

    International Nuclear Information System (INIS)

    Dubner, D.; Perez, M.R. Del; Michelin, S.C.; Gisone, P.A.

    1997-01-01

    The mechanisms of radiation induced cellular death constitute an objective of research ever since the first biological effects of radiation were first observed. The explosion of information produced in the last 20 years calls for a careful analysis due to the apparent contradictory data related to the cellular system studied and the range of doses used. This review focuses on the role of the active oxygen species, in particular the nitric oxides, in its relevance as potential mediator of radiation induced cellular death

  3. Global properties of cellular automata

    International Nuclear Information System (INIS)

    Jen, E.

    1986-01-01

    Cellular automata are discrete mathematical systems that generate diverse, often complicated, behavior using simple deterministic rules. Analysis of the local structure of these rules makes possible a description of the global properties of the associated automata. A class of cellular automata that generate infinitely many aperoidic temporal sequences is defined,a s is the set of rules for which inverses exist. Necessary and sufficient conditions are derived characterizing the classes of ''nearest-neighbor'' rules for which arbitrary finite initial conditions (i) evolve to a homogeneous state; (ii) generate at least one constant temporal sequence

  4. Extending in silico mechanism-of-action analysis by annotating targets with pathways: application to cellular cytotoxicity readouts.

    Science.gov (United States)

    Liggi, Sonia; Drakakis, Georgios; Koutsoukas, Alexios; Cortes-Ciriano, Isidro; Martínez-Alonso, Patricia; Malliavin, Thérèse E; Velazquez-Campoy, Adrian; Brewerton, Suzanne C; Bodkin, Michael J; Evans, David A; Glen, Robert C; Carrodeguas, José Alberto; Bender, Andreas

    2014-01-01

    An in silico mechanism-of-action analysis protocol was developed, comprising molecule bioactivity profiling, annotation of predicted targets with pathways and calculation of enrichment factors to highlight targets and pathways more likely to be implicated in the studied phenotype. The method was applied to a cytotoxicity phenotypic endpoint, with enriched targets/pathways found to be statistically significant when compared with 100 random datasets. Application on a smaller apoptotic set (10 molecules) did not allowed to obtain statistically relevant results, suggesting that the protocol requires modification such as analysis of the most frequently predicted targets/annotated pathways. Pathway annotations improved the mechanism-of-action information gained by target prediction alone, allowing a better interpretation of the predictions and providing better mapping of targets onto pathways.

  5. Cell surface profiling using high-throughput flow cytometry: a platform for biomarker discovery and analysis of cellular heterogeneity.

    Directory of Open Access Journals (Sweden)

    Craig A Gedye

    Full Text Available Cell surface proteins have a wide range of biological functions, and are often used as lineage-specific markers. Antibodies that recognize cell surface antigens are widely used as research tools, diagnostic markers, and even therapeutic agents. The ability to obtain broad cell surface protein profiles would thus be of great value in a wide range of fields. There are however currently few available methods for high-throughput analysis of large numbers of cell surface proteins. We describe here a high-throughput flow cytometry (HT-FC platform for rapid analysis of 363 cell surface antigens. Here we demonstrate that HT-FC provides reproducible results, and use the platform to identify cell surface antigens that are influenced by common cell preparation methods. We show that multiple populations within complex samples such as primary tumors can be simultaneously analyzed by co-staining of cells with lineage-specific antibodies, allowing unprecedented depth of analysis of heterogeneous cell populations. Furthermore, standard informatics methods can be used to visualize, cluster and downsample HT-FC data to reveal novel signatures and biomarkers. We show that the cell surface profile provides sufficient molecular information to classify samples from different cancers and tissue types into biologically relevant clusters using unsupervised hierarchical clustering. Finally, we describe the identification of a candidate lineage marker and its subsequent validation. In summary, HT-FC combines the advantages of a high-throughput screen with a detection method that is sensitive, quantitative, highly reproducible, and allows in-depth analysis of heterogeneous samples. The use of commercially available antibodies means that high quality reagents are immediately available for follow-up studies. HT-FC has a wide range of applications, including biomarker discovery, molecular classification of cancers, or identification of novel lineage specific or stem cell

  6. Cell surface profiling using high-throughput flow cytometry: a platform for biomarker discovery and analysis of cellular heterogeneity.

    Science.gov (United States)

    Gedye, Craig A; Hussain, Ali; Paterson, Joshua; Smrke, Alannah; Saini, Harleen; Sirskyj, Danylo; Pereira, Keira; Lobo, Nazleen; Stewart, Jocelyn; Go, Christopher; Ho, Jenny; Medrano, Mauricio; Hyatt, Elzbieta; Yuan, Julie; Lauriault, Stevan; Meyer, Mona; Kondratyev, Maria; van den Beucken, Twan; Jewett, Michael; Dirks, Peter; Guidos, Cynthia J; Danska, Jayne; Wang, Jean; Wouters, Bradly; Neel, Benjamin; Rottapel, Robert; Ailles, Laurie E

    2014-01-01

    Cell surface proteins have a wide range of biological functions, and are often used as lineage-specific markers. Antibodies that recognize cell surface antigens are widely used as research tools, diagnostic markers, and even therapeutic agents. The ability to obtain broad cell surface protein profiles would thus be of great value in a wide range of fields. There are however currently few available methods for high-throughput analysis of large numbers of cell surface proteins. We describe here a high-throughput flow cytometry (HT-FC) platform for rapid analysis of 363 cell surface antigens. Here we demonstrate that HT-FC provides reproducible results, and use the platform to identify cell surface antigens that are influenced by common cell preparation methods. We show that multiple populations within complex samples such as primary tumors can be simultaneously analyzed by co-staining of cells with lineage-specific antibodies, allowing unprecedented depth of analysis of heterogeneous cell populations. Furthermore, standard informatics methods can be used to visualize, cluster and downsample HT-FC data to reveal novel signatures and biomarkers. We show that the cell surface profile provides sufficient molecular information to classify samples from different cancers and tissue types into biologically relevant clusters using unsupervised hierarchical clustering. Finally, we describe the identification of a candidate lineage marker and its subsequent validation. In summary, HT-FC combines the advantages of a high-throughput screen with a detection method that is sensitive, quantitative, highly reproducible, and allows in-depth analysis of heterogeneous samples. The use of commercially available antibodies means that high quality reagents are immediately available for follow-up studies. HT-FC has a wide range of applications, including biomarker discovery, molecular classification of cancers, or identification of novel lineage specific or stem cell markers.

  7. Digital spectrometer for coincidence measurement of Doppler broadening of positron annihilation radiation

    International Nuclear Information System (INIS)

    Cizek, J.; Vlcek, M.; Prochazka, I.

    2010-01-01

    High-resolution digital coincidence Doppler broadening spectrometer equipped with two high-purity Ge detectors and two-channel 12-bit fast digitizer was developed and tested in this work. Two configurations were compared: (i) semi-digital setup which uses active analogue shaping of detector pulses prior to digitization to improve signal-to-noise ratio, and (ii) pure-digital setup which samples detector pulses directly. Software procedure developed for analysis of sampled waveforms, i.e. precise determination of energy of detected photon and rejection of distorted pulses, is described. Performance of digital coincidence spectrometer was compared with traditional analogue setup connected to the same detectors. It was found that digital spectrometer enables to achieve better energy resolution than in traditional analogue setup. Moreover, in digital configuration one has better control over shape of the signal. This allows efficient elimination of undesired distorted or damaged waveforms and to obtain spectrum of better clarity. The superior parameters of new digital coincidence Doppler broadening spectrometer are demonstrated by benchmark measurements of well defined Fe and Al specimens and also by the detection of rare annihilation in flight events.

  8. Wireless Cellular Mobile Communications

    OpenAIRE

    Zalud, V.

    2002-01-01

    In this article is briefly reviewed the history of wireless cellular mobile communications, examined the progress in current second generation (2G) cellular standards and discussed their migration to the third generation (3G). The European 2G cellular standard GSM and its evolution phases GPRS and EDGE are described somewhat in detail. The third generation standard UMTS taking up on GSM/GPRS core network and equipped with a new advanced access network on the basis of code division multiple ac...

  9. Histogram Analysis of Diffusion Weighted Imaging at 3T is Useful for Prediction of Lymphatic Metastatic Spread, Proliferative Activity, and Cellularity in Thyroid Cancer.

    Science.gov (United States)

    Schob, Stefan; Meyer, Hans Jonas; Dieckow, Julia; Pervinder, Bhogal; Pazaitis, Nikolaos; Höhn, Anne Kathrin; Garnov, Nikita; Horvath-Rizea, Diana; Hoffmann, Karl-Titus; Surov, Alexey

    2017-04-12

    Pre-surgical diffusion weighted imaging (DWI) is increasingly important in the context of thyroid cancer for identification of the optimal treatment strategy. It has exemplarily been shown that DWI at 3T can distinguish undifferentiated from well-differentiated thyroid carcinoma, which has decisive implications for the magnitude of surgery. This study used DWI histogram analysis of whole tumor apparent diffusion coefficient (ADC) maps. The primary aim was to discriminate thyroid carcinomas which had already gained the capacity to metastasize lymphatically from those not yet being able to spread via the lymphatic system. The secondary aim was to reflect prognostically important tumor-biological features like cellularity and proliferative activity with ADC histogram analysis. Fifteen patients with follicular-cell derived thyroid cancer were enrolled. Lymph node status, extent of infiltration of surrounding tissue, and Ki-67 and p53 expression were assessed in these patients. DWI was obtained in a 3T system using b values of 0, 400, and 800 s/mm². Whole tumor ADC volumes were analyzed using a histogram-based approach. Several ADC parameters showed significant correlations with immunohistopathological parameters. Most importantly, ADC histogram skewness and ADC histogram kurtosis were able to differentiate between nodal negative and nodal positive thyroid carcinoma. histogram analysis of whole ADC tumor volumes has the potential to provide valuable information on tumor biology in thyroid carcinoma. However, further studies are warranted.

  10. Biomechanics of cellular solids.

    Science.gov (United States)

    Gibson, Lorna J

    2005-03-01

    Materials with a cellular structure are widespread in nature and include wood, cork, plant parenchyma and trabecular bone. Natural cellular materials are often mechanically efficient: the honeycomb-like microstructure of wood, for instance, gives it an exceptionally high performance index for resisting bending and buckling. Here we review the mechanics of a wide range of natural cellular materials and examine their role in lightweight natural sandwich structures (e.g. iris leaves) and natural tubular structures (e.g. plant stems or animal quills). We also describe two examples of engineered biomaterials with a cellular structure, designed to replace or regenerate tissue in the body.

  11. E-cigarettes: a need to broaden the debate.

    Science.gov (United States)

    Latif, E; Nair, M

    2016-11-01

    The unregulated market for e-cigarettes continues to grow, with debates on their efficacy and impact on global public health. E-cigarettes, or electronic nicotine delivery systems (ENDs), are marketed as a 'safe' alternative to tobacco products and a tool for 'harm reduction'. Some public health experts are calling it a 'game changer' and favour the 'harm reduction' strategy, while others dispute this claim. In our opinion, the debate needs to be broadened to encompass other related concerns and effects on non-users and affected stakeholders. As with tobacco control, a holistic approach is needed to build a raft of policies that effectively address the issue from all angles and look beyond the direct health implications of e-cigarette use to explore the social, economic, political and environmental aspects of this debate, putting 'harm reduction' in context.

  12. Correlation function and electronic spectral line broadening in relativistic plasmas

    Directory of Open Access Journals (Sweden)

    Douis S.

    2013-01-01

    Full Text Available The electrons dynamics and the time autocorrelation function Cee(t for the total electric microfield of the electrons on positive charge impurity embedded in a plasma are considered when the relativistic dynamic of the electrons is taken into account. We have, at first, built the effective potential governing the electrons dynamics. This potential obeys a nonlinear integral equation that we have solved numerically. Regarding the electron broadening of the line in plasma, we have found that when the plasma parameters change, the amplitude of the collision operator changes in the same way as the time integral of Cee(t. The electron-impurity interaction is taken at first time as screened Deutsh interaction and at the second time as Kelbg interaction. Comparisons of all interesting quantities are made with respect to the previous interactions as well as between classical and relativistic dynamics of electrons.

  13. Comparing the line broadened quasilinear model to Vlasov code

    International Nuclear Information System (INIS)

    Ghantous, K.; Berk, H. L.; Gorelenkov, N. N.

    2014-01-01

    The Line Broadened Quasilinear (LBQ) model is revisited to study its predicted saturation level as compared with predictions of a Vlasov solver BOT [Lilley et al., Phys. Rev. Lett. 102, 195003 (2009) and M. Lilley, BOT Manual. The parametric dependencies of the model are modified to achieve more accuracy compared to the results of the Vlasov solver both in regards to a mode amplitude's time evolution to a saturated state and its final steady state amplitude in the parameter space of the model's applicability. However, the regions of stability as predicted by LBQ model and BOT are found to significantly differ from each other. The solutions of the BOT simulations are found to have a larger region of instability than the LBQ simulations

  14. Comparing the line broadened quasilinear model to Vlasov code

    Energy Technology Data Exchange (ETDEWEB)

    Ghantous, K. [Laboratoire de Physique des Plasmas, Ecole Polytechnique, 91128 Palaiseau Cedex (France); Princeton Plasma Physics Laboratory, P.O. Box 451, Princeton, New Jersey 08543-0451 (United States); Berk, H. L. [Institute for Fusion Studies, University of Texas, 2100 San Jacinto Blvd, Austin, Texas 78712-1047 (United States); Gorelenkov, N. N. [Princeton Plasma Physics Laboratory, P.O. Box 451, Princeton, New Jersey 08543-0451 (United States)

    2014-03-15

    The Line Broadened Quasilinear (LBQ) model is revisited to study its predicted saturation level as compared with predictions of a Vlasov solver BOT [Lilley et al., Phys. Rev. Lett. 102, 195003 (2009) and M. Lilley, BOT Manual. The parametric dependencies of the model are modified to achieve more accuracy compared to the results of the Vlasov solver both in regards to a mode amplitude's time evolution to a saturated state and its final steady state amplitude in the parameter space of the model's applicability. However, the regions of stability as predicted by LBQ model and BOT are found to significantly differ from each other. The solutions of the BOT simulations are found to have a larger region of instability than the LBQ simulations.

  15. Comparing the line broadened quasilinear model to Vlasov code

    Science.gov (United States)

    Ghantous, K.; Berk, H. L.; Gorelenkov, N. N.

    2014-03-01

    The Line Broadened Quasilinear (LBQ) model is revisited to study its predicted saturation level as compared with predictions of a Vlasov solver BOT [Lilley et al., Phys. Rev. Lett. 102, 195003 (2009) and M. Lilley, BOT Manual. The parametric dependencies of the model are modified to achieve more accuracy compared to the results of the Vlasov solver both in regards to a mode amplitude's time evolution to a saturated state and its final steady state amplitude in the parameter space of the model's applicability. However, the regions of stability as predicted by LBQ model and BOT are found to significantly differ from each other. The solutions of the BOT simulations are found to have a larger region of instability than the LBQ simulations.

  16. Optimized coincidence Doppler broadening spectroscopy using deconvolution algorithms

    International Nuclear Information System (INIS)

    Ho, K.F.; Ching, H.M.; Cheng, K.W.; Beling, C.D.; Fung, S.; Ng, K.P.

    2004-01-01

    In the last few years a number of excellent deconvolution algorithms have been developed for use in ''de-blurring'' 2D images. Here we report briefly on one such algorithm we have studied which uses the non-negativity constraint to optimize the regularization and which is applied to the 2D image like data produced in Coincidence Doppler Broadening Spectroscopy (CDBS). The system instrumental resolution functions are obtained using the 514 keV line from 85 Sr. The technique when applied to a series of well annealed polycrystalline metals gives two photon momentum data on a quality comparable to that obtainable using 1D Angular Correlation of Annihilation Radiation (ACAR). (orig.)

  17. Reprint of: Virus-Specific T Cells: Broadening Applicability.

    Science.gov (United States)

    Barrett, A John; Prockop, Susan; Bollard, Catherine M

    2018-03-01

    Virus infection remains an appreciable cause of morbidity and mortality after hematopoietic stem cell transplantation (HSCT). Although pharmacotherapy and/or antibody therapy may help prevent or treat viral disease, these drugs are expensive, toxic, and often ineffective due to primary or secondary resistance. Further, effective treatments are limited for many infections (eg, adenovirus, BK virus), which are increasingly detected after alternative donor transplants. These deficiencies in conventional therapeutics have increased interest in an immunotherapeutic approach to viral disorders, leading to adoptive transfer of virus-specific cytotoxic T lymphocytes (VSTs), which can rapidly reconstitute antiviral immunity post-transplantation without causing graft-versus-host disease. This review will explore how the VST field has improved outcomes for many patients with life-threatening viral infections after HSCT, and how to broaden applicability beyond the "patient-specific" products, as well as extending to other viral diseases even outside the context of HSCT. Copyright © 2018. Published by Elsevier Inc.

  18. Spectral broadening of planetary radar signals by the solar wind

    International Nuclear Information System (INIS)

    Harmon, J.K.; Coles, W.A.

    1983-01-01

    The microturbulence spectrum of the solar wind is estimated using the spectral broadening of planetary radar signals. Observations were made with the two radars (12.6 cm and 70 cm) at Arecibo Observatory during the 1979 and 1981 superior conjunctions of Venus. These observations, which span the solar distance range of 5.4 to 25.5 R/sub sun/, are the first of their type to be reported. The data are consistent with earlier observations where comparisons can be made. The flattening of the high-frequency portion of the spectrum near the Sun reported by Woo and Armstrong is confirmed. In one case clear evidence for an inner scale in the vicinity of 2 km is found. Two transients, 1979 August 15 and 1981 April 24-25, with rather different characteristics were observed

  19. Broadening soybean genetic basis in the northeast of China

    Institute of Scientific and Technical Information of China (English)

    WangJinling

    1994-01-01

    The bottle neek of advancement of soybean breeding inthe Northeast of China is the lack of genetic diversity of the parents used in cross breeding.In order to overcome this constrained condition,under the sponsorship of China National Committe of Natural Science Fundation,a network project with the topic"Broadening and Improving of the Genetic Basis of the Northeast Soybeans" was established in 1990,and the Northeast agricultural University was apointed to take charge of the project.The project included the following four items:I.Breeding high yield and improved quality Northeast Soybeans,directed by Hcilongjiang Academy of Agricultural Sciencee .II.Development of new soybean gerplasms highly resistant to diseases epidemic in Northeast China directed by Northeast Agricultural University.Ⅲ.Exploitation of the potential of wild and semicultivated soybeans for broadening and improving the genetic basis of Northeast soybeans,directed by Jilin Academy of Agricultural Science.Ⅳ.Improving methods and technique for development of new soybean genetic resources.directed by Nanjing Agricultural University .Each item contained several research subjects conducted by research workers of different institutes of agricultural sicences.During the period 1991-1992.considerable promising new germplasms had been discovered or developed.The new germplasms not only possessed specific improved characters but also behaved with appropriate ecological types adapted to different conditions of Northeast.Among the numerous new germplasms developed.Gong Jio 8757-3 had a protein content of 49.41%,100 seed weight 16-17g,and acceptable agronomic characters,which was considered a very valuable new high protein content germplasm.Such developed new germplasma with enforced and imprved genetic basis will be used primarily as parents in soybean cross breeding.

  20. Expansion and broadening of coronal loop transients: A theoretical explanation

    International Nuclear Information System (INIS)

    Mouschovias, T.C.; Poland, A.I.

    1978-01-01

    We explore the consequences of the assumption that a coronal loop transient (observed by the white-light coronagraph aboard Skylab) is a twisted rope of magnetic field lines expanding and broadening in the background coronal plasma and magnetic field. We show that the expansion (i.e., the outward motion of the loop top) can be accounted for by the azimuthal component of the field, B/sub az/; the observed broadening of the loop as it moves outward can be accounted for by the longitudinal component of the field, B/sub l/. In order to have a net outward force and at the same time avoid a classicial pinch (sausage) instability, the two components of the field must satisfy the inequality 1.41 B/sub l/>B/sub az/>B/sub l/.We predict that, as the loop rises, the width (h) of its top portion should vary proportionally with the distance (R) from the Sun's center. This is in good agreement with measurements that show hproportionalR/sup 0.8/. Our prediction, that the radius of curvature (R/sub c/) of the top portion of the loop should be proportional to R, differs from the measured variation R/sub c/proportionalR/sup 1.6/. The difference could be accounted for by a drag due to the background coronal field that flattens the loop's top. A statistical study that can test this possibility is suggested. We also calculate the magnetic field within the top section of the loop. It is approximately equal to 1 gauss at R=2 R/sub sun/ and varies somewhat more slowly than R -2 during expansion

  1. Proteomic analysis of HIV-1 Nef cellular binding partners reveals a role for exocyst complex proteins in mediating enhancement of intercellular nanotube formation

    Directory of Open Access Journals (Sweden)

    Mukerji Joya

    2012-06-01

    Full Text Available Abstract Background HIV-1 Nef protein contributes to pathogenesis via multiple functions that include enhancement of viral replication and infectivity, alteration of intracellular trafficking, and modulation of cellular signaling pathways. Nef stimulates formation of tunneling nanotubes and virological synapses, and is transferred to bystander cells via these intercellular contacts and secreted microvesicles. Nef associates with and activates Pak2, a kinase that regulates T-cell signaling and actin cytoskeleton dynamics, but how Nef promotes nanotube formation is unknown. Results To identify Nef binding partners involved in Pak2-association dependent Nef functions, we employed tandem mass spectrometry analysis of Nef immunocomplexes from Jurkat cells expressing wild-type Nef or Nef mutants defective for the ability to associate with Pak2 (F85L, F89H, H191F and A72P, A75P in NL4-3. We report that wild-type, but not mutant Nef, was associated with 5 components of the exocyst complex (EXOC1, EXOC2, EXOC3, EXOC4, and EXOC6, an octameric complex that tethers vesicles at the plasma membrane, regulates polarized exocytosis, and recruits membranes and proteins required for nanotube formation. Additionally, Pak2 kinase was associated exclusively with wild-type Nef. Association of EXOC1, EXOC2, EXOC3, and EXOC4 with wild-type, but not mutant Nef, was verified by co-immunoprecipitation assays in Jurkat cells. Furthermore, shRNA-mediated depletion of EXOC2 in Jurkat cells abrogated Nef-mediated enhancement of nanotube formation. Using bioinformatic tools, we visualized protein interaction networks that reveal functional linkages between Nef, the exocyst complex, and the cellular endocytic and exocytic trafficking machinery. Conclusions Exocyst complex proteins are likely a key effector of Nef-mediated enhancement of nanotube formation, and possibly microvesicle secretion. Linkages revealed between Nef and the exocyst complex suggest a new paradigm of

  2. Comparative proteomic analysis of Xanthomonas citri ssp. citri periplasmic proteins reveals changes in cellular envelope metabolism during in vitro pathogenicity induction.

    Science.gov (United States)

    Artier, Juliana; da Silva Zandonadi, Flávia; de Souza Carvalho, Flávia Maria; Pauletti, Bianca Alves; Leme, Adriana Franco Paes; Carnielli, Carolina Moretto; Selistre-de-Araujo, Heloisa Sobreiro; Bertolini, Maria Célia; Ferro, Jesus Aparecido; Belasque Júnior, José; de Oliveira, Julio Cezar Franco; Novo-Mansur, Maria Teresa Marques

    2018-01-01

    Citrus canker is a plant disease caused by Gram-negative bacteria from the genus Xanthomonas. The most virulent species is Xanthomonas citri ssp. citri (XAC), which attacks a wide range of citrus hosts. Differential proteomic analysis of the periplasm-enriched fraction was performed for XAC cells grown in pathogenicity-inducing (XAM-M) and pathogenicity-non-inducing (nutrient broth) media using two-dimensional electrophoresis combined with liquid chromatography-tandem mass spectrometry. Amongst the 40 proteins identified, transglycosylase was detected in a highly abundant spot in XAC cells grown under inducing condition. Additional up-regulated proteins related to cellular envelope metabolism included glucose-1-phosphate thymidylyltransferase, dTDP-4-dehydrorhamnose-3,5-epimerase and peptidyl-prolyl cis-trans-isomerase. Phosphoglucomutase and superoxide dismutase proteins, known to be involved in pathogenicity in other Xanthomonas species or organisms, were also detected. Western blot and quantitative real-time polymerase chain reaction analyses for transglycosylase and superoxide dismutase confirmed that these proteins were up-regulated under inducing condition, consistent with the proteomic results. Multiple spots for the 60-kDa chaperonin and glyceraldehyde-3-phosphate dehydrogenase were identified, suggesting the presence of post-translational modifications. We propose that substantial alterations in cellular envelope metabolism occur during the XAC infectious process, which are related to several aspects, from defence against reactive oxygen species to exopolysaccharide synthesis. Our results provide new candidates for virulence-related proteins, whose abundance correlates with the induction of pathogenicity and virulence genes, such as hrpD6, hrpG, hrpB7, hpa1 and hrpX. The results present new potential targets against XAC to be investigated in further functional studies. © 2016 BSPP AND JOHN WILEY & SONS LTD.

  3. Cellular imaging electron tomography and related techniques

    CERN Document Server

    2018-01-01

    This book highlights important techniques for cellular imaging and covers the basics and applications of electron tomography and related techniques. In addition, it considers practical aspects and broadens the technological focus by incorporating techniques that are only now becoming accessible (e.g. block face imaging).  The first part of the book describes the electron microscopy 3D technique available to scientists around the world, allowing them to characterize organelles, cells and tissues. The major emphasis is on new technologies like scanning transmission electron microscopy (STEM) tomography, though the book also reviews some of the more proven technologies like electron tomography. In turn, the second part is dedicated to the reconstruction of data sets, signal improvement and interpretation.

  4. Analysis of cellular response by exposure to acute or chronic radiation in human lymphoblastoid TK-6 cells

    Science.gov (United States)

    Ohnishi, T.; Yasumoto, J.; Takahashi, A.; Ohnishi, K.

    To clarify the biological effects of low-dose rate radiation on human health for long-term stay in space, we analyzed the induction of apoptosis and apoptosis-related gene expression after irradiation with different dose-rate in human lymphoblastoid TK-6 cells harboring wild-type p53 gene. We irradiated TK-6 cells by X-ray at 1.5 Gy (1 Gy/min) and then sampled at 25 hr after culturing. We also irradiated by gamma-ray at 1.5 Gy (1 mGy/min) and then sampled immediately or 25 hr after irradiation. For DNA ladder analysis, we extracted DNA from these samples and electrophoresed with 2% agarose gel. In addition, we extracted mRNA from these samples for DNA-array analysis. mRNA from non-irradiated cells was used as a control. After labeling the cDNA against mRNA with [α -33P]-dCTP and hybridizing onto DNA array (Human Apoptosis Expression Array, R&D Systems), we scanned the profiles of the spots by a phosphorimager (BAS5000, FUJI FILM) and calculated using a NIH Image program. The data of each DNA-array were normalized with eight kinds of house keeping genes. We analyzed the expression level of apoptosis-related genes such as p53-related, Bcl-2 family, Caspase family and Fas-related genes. DNA ladders were obviously detected in the cells exposed to a high dose-rate radiation. We detected the induction of the gene expression of apoptosis-promotive genes. In contrast, almost no apoptosis was observed in the cells exposed to the chronic radiation at a low dose-rate. In addition, we detected the induction of the gene expression of apoptosis-suppressive genes as compared with apoptosis promotive-genes immediately after chronic irradiation. These results lead the importance of biological meaning of exposure to radiation at low dose-rate from an aspect of carcinogenesis. Finally, the effects of chronic irradiation become a highly important issue in space radiation biology for human health.

  5. Cellular burning in lean premixed turbulent hydrogen-air flames: Coupling experimental and computational analysis at the laboratory scale

    International Nuclear Information System (INIS)

    Day, M S; Bell, J B; Beckner, V E; Lijewski, M J; Cheng, R K; Tachibana, S

    2009-01-01

    One strategy for reducing US dependence on petroleum is to develop new combustion technologies for burning the fuel-lean mixtures of hydrogen or hydrogen-rich syngas fuels obtained from the gasification of coal and biomass. Fuel-flexible combustion systems based on lean premixed combustion have the potential for dramatically reducing pollutant emissions in transportation systems, heat and stationary power generation. However, lean premixed flames are highly susceptible to fluid-dynamical combustion instabilities making robust and reliable systems difficult to design. Low swirl burners are emerging as an important technology for meeting design requirements in terms of both reliability and emissions for next generation combustion devices. In this paper, we present simulations of a lean, premixed hydrogen flame stabilized on a laboratory-scale low swirl burner. The simulations use detailed chemistry and transport without incorporating explicit models for turbulence or turbulence/chemistry interaction. Here we discuss the overall structure of the flame and compare with experimental data. We also use the simulation data to elucidate the characteristics of the turbulent flame interaction and how this impacts the analysis of experimental measurements.

  6. Wall-collision line broadening of molecular oxygen within nanoporous materials

    Energy Technology Data Exchange (ETDEWEB)

    Xu, Can T.; Lewander, Maerta; Andersson-Engels, Stefan; Svensson, Tomas; Svanberg, Sune [Department of Physics, Lund University, P. O. Box 118, SE-221 00 Lund (Sweden); Adolfsson, Erik [Ceramic Materials, SWEREA IVF, Box 104, SE-431 22 Moelndal (Sweden)

    2011-10-15

    Wall-collision broadening of near-infrared absorption lines of molecular oxygen confined in nanoporous zirconia is studied by employing high-resolution diode-laser spectroscopy. The broadening is studied for pores of different sizes under a range of pressures, providing new insights on how wall collisions and intermolecular collisions influence the total spectroscopic line profile. The pressure series show that wall-collision broadening is relatively more prominent under reduced pressures, enabling sensitive means to probe pore sizes of porous materials. In addition, we show that the total wall-collision-broadened profile strongly deviates from a Voigt profile and that wall-collision broadening exhibits an additive-like behavior to the pressure and Doppler broadening.

  7. Quantification of the heterogeneity of prognostic cellular biomarkers in ewing sarcoma using automated image and random survival forest analysis.

    Directory of Open Access Journals (Sweden)

    Claudia Bühnemann

    Full Text Available Driven by genomic somatic variation, tumour tissues are typically heterogeneous, yet unbiased quantitative methods are rarely used to analyse heterogeneity at the protein level. Motivated by this problem, we developed automated image segmentation of images of multiple biomarkers in Ewing sarcoma to generate distributions of biomarkers between and within tumour cells. We further integrate high dimensional data with patient clinical outcomes utilising random survival forest (RSF machine learning. Using material from cohorts of genetically diagnosed Ewing sarcoma with EWSR1 chromosomal translocations, confocal images of tissue microarrays were segmented with level sets and watershed algorithms. Each cell nucleus and cytoplasm were identified in relation to DAPI and CD99, respectively, and protein biomarkers (e.g. Ki67, pS6, Foxo3a, EGR1, MAPK localised relative to nuclear and cytoplasmic regions of each cell in order to generate image feature distributions. The image distribution features were analysed with RSF in relation to known overall patient survival from three separate cohorts (185 informative cases. Variation in pre-analytical processing resulted in elimination of a high number of non-informative images that had poor DAPI localisation or biomarker preservation (67 cases, 36%. The distribution of image features for biomarkers in the remaining high quality material (118 cases, 104 features per case were analysed by RSF with feature selection, and performance assessed using internal cross-validation, rather than a separate validation cohort. A prognostic classifier for Ewing sarcoma with low cross-validation error rates (0.36 was comprised of multiple features, including the Ki67 proliferative marker and a sub-population of cells with low cytoplasmic/nuclear ratio of CD99. Through elimination of bias, the evaluation of high-dimensionality biomarker distribution within cell populations of a tumour using random forest analysis in quality

  8. Quantification of the heterogeneity of prognostic cellular biomarkers in ewing sarcoma using automated image and random survival forest analysis.

    Science.gov (United States)

    Bühnemann, Claudia; Li, Simon; Yu, Haiyue; Branford White, Harriet; Schäfer, Karl L; Llombart-Bosch, Antonio; Machado, Isidro; Picci, Piero; Hogendoorn, Pancras C W; Athanasou, Nicholas A; Noble, J Alison; Hassan, A Bassim

    2014-01-01

    Driven by genomic somatic variation, tumour tissues are typically heterogeneous, yet unbiased quantitative methods are rarely used to analyse heterogeneity at the protein level. Motivated by this problem, we developed automated image segmentation of images of multiple biomarkers in Ewing sarcoma to generate distributions of biomarkers between and within tumour cells. We further integrate high dimensional data with patient clinical outcomes utilising random survival forest (RSF) machine learning. Using material from cohorts of genetically diagnosed Ewing sarcoma with EWSR1 chromosomal translocations, confocal images of tissue microarrays were segmented with level sets and watershed algorithms. Each cell nucleus and cytoplasm were identified in relation to DAPI and CD99, respectively, and protein biomarkers (e.g. Ki67, pS6, Foxo3a, EGR1, MAPK) localised relative to nuclear and cytoplasmic regions of each cell in order to generate image feature distributions. The image distribution features were analysed with RSF in relation to known overall patient survival from three separate cohorts (185 informative cases). Variation in pre-analytical processing resulted in elimination of a high number of non-informative images that had poor DAPI localisation or biomarker preservation (67 cases, 36%). The distribution of image features for biomarkers in the remaining high quality material (118 cases, 104 features per case) were analysed by RSF with feature selection, and performance assessed using internal cross-validation, rather than a separate validation cohort. A prognostic classifier for Ewing sarcoma with low cross-validation error rates (0.36) was comprised of multiple features, including the Ki67 proliferative marker and a sub-population of cells with low cytoplasmic/nuclear ratio of CD99. Through elimination of bias, the evaluation of high-dimensionality biomarker distribution within cell populations of a tumour using random forest analysis in quality controlled tumour

  9. Linearizable cellular automata

    International Nuclear Information System (INIS)

    Nobe, Atsushi; Yura, Fumitaka

    2007-01-01

    The initial value problem for a class of reversible elementary cellular automata with periodic boundaries is reduced to an initial-boundary value problem for a class of linear systems on a finite commutative ring Z 2 . Moreover, a family of such linearizable cellular automata is given

  10. Hβ Stark broadening in cold plasmas with low electron densities calibrated with Thomson scattering

    International Nuclear Information System (INIS)

    Palomares, J.M.; Hübner, S.; Carbone, E.A.D.; Vries, N. de; Veldhuizen, E.M. de; Sola, A.; Gamero, A.; Mullen, J.J.A.M. van der

    2012-01-01

    In the present work Stark broadening measurements have been carried out on low electron density (n e 19 m −3 ) and (relatively) low gas temperature (T g e . - Highlights: ► Stark broadening measurements at low density and temperature conditions ► Calibration with Thomson scattering ► Indications of the non-Lorentzian shape of the Stark broadening ► Impossibility of simultaneous diagnostic of gas temperature and electron density

  11. Tunable diode laser measurements of air-broadened linewidths in the nu6 band of H2O2

    Science.gov (United States)

    Malathy Devi, V.; Benner, D. C.; Rinsland, C. P.; Smith, M. A. H.; Fridovich, B.

    1986-01-01

    Air-broadened half-widths of 18 transitions in the nu6 band of H2O2 between 1252/cm and 1291/cm have been determined from spectra recorded at room temperature using a tunable diode laser spectrometer. The preparation of the H2O2 gas samples for the measurements is described, and the data analysis is discussed, including the derivation of Lorentz broadening coefficients and the contribution of molecular collisions to the measured Lorentz half-widths. For the 18 transitions, the half-widths varied from 0.0923/cm/atm to 0.1155/cm/atm at 296 K, with a mean value of 0.1020/cm/atm. An error of less than 10 percent is estimated for these results.

  12. Broadening of the x-ray emission line due to the instrumental function of the double-crystal spectrometer

    International Nuclear Information System (INIS)

    Tochio, T.; Ito, Y.; Omote, K.

    2002-01-01

    The influence of the instrumental function on the Cu Kα 1 emission line was investigated for the case of a double-crystal spectrometer. The magnitude of broadening for both Si(220) and Si(440) was calculated for a Lorentzian emission line with the width of 1-5 eV; the broadening for Si(220) is 0.12-0.18 eV while that for Si(440) is only 0.015-0.043 eV. The former is too large to be neglected, so the correction for the instrumental function is important. The spectrum affected by the instrumental function seems to keep the shape of Lorentzian though its width is larger. The fact indicates that the Lorentzian fitting analysis is effective if the appropriate correction for width is done

  13. Excitation dependence of resonance line self-broadening at different atomic densities

    OpenAIRE

    Li, Hebin; Sautenkov, Vladimir A.; Rostovtsev, Yuri V.; Scully, Marlan O.

    2009-01-01

    We study the dipole-dipole spectral broadening of a resonance line at high atomic densities when the self-broadening dominates. The selective reflection spectrum of a weak probe beam from the interface of the cell window and rubidium vapor are recorded in the presence of a far-detuned pump beam. The excitation due to the pump reduces the self-broadening. We found that the self-broadening reduction dependence on the pump power is atomic density independent. These results provide experimental e...

  14. A generalized cellular automata approach to modeling first order ...

    Indian Academy of Sciences (India)

    system, consisting of space, time and state, structured with simple local rules without ... Sensitivity analysis of a stochastic cellular automata model. 413 ..... Baetens J M and De Baets B 2011 Design and parameterization of a stochastic cellular.

  15. FAKTOR-FAKTOR BROADEN BUILD YANG MEMPENGARUHI KINERJA KELEMBAGAAN PADA LEMBAGA SEKURITAS DI MALANG

    Directory of Open Access Journals (Sweden)

    Erna Retna Rahadjeng

    2014-07-01

    Full Text Available This study aims to identify the performing of an agency applying nuturing institutional capital markets through built Broaden approach to improve the performance of securities institution. This phenomenological study was conducted on securities agency in Malang. The data has been collected by using participant observation, indepth interviews, and questionnaires. The data was anlyzed by using content analysis. Based on the result, the researcher concluded that the variables (x1 Emotional Resiliency; (x2 Cognitive Resiliency; (x3 social resiliency; and Financial Resiliency (x4 have jointly significant influence on the performance of securities agency. Similarly, each variable partially has an influence on financial performance. The dominant variable influencing the performance of securities agency is cognitive resiliency variable that has the highest value of regression coefficient. Therefore, the hypothesis stated about there is an influence of emotional resiliency; cognitive resiliency; social resiliency; and financial resiliency variables towards the performance of the securities agency in Malang is accepted.

  16. Techniques for obtaining velocity distributions of atoms or ions from Doppler-broadened spectral line profiles

    International Nuclear Information System (INIS)

    Moran, T.G.

    1986-12-01

    Analysis of the doppler-broadened profiles of spectral lines radiated by atoms or ions in plasmas yields information about their velocity distributions. Researchers have analysed profiles of lines radiated by atoms in isotropic velocity distributions in several ways, one being the inversion of the integral equation which relates the velocity distribution to the line profile. This inversion formula was derived for a separate application and was given to within an arbitrary multiplicative constant. This paper presents a new derivation which obtains the inversion exactly, using a method which is easily generalized for determination of anisotropic velocity distribution functions. The technique to obtain an anisotropic velocity distribution function from line profiles measured at different angles is outlined

  17. Determination of ion temperatures from Zeeman broadened spectral lines in the edge of Tore Supra

    Energy Technology Data Exchange (ETDEWEB)

    Klepper, C.C.; Isler, R.C.; Tobin, S.J.; Hogan, J.T. [Oak Ridge National Lab., TN (United States). Fusion Energy Div.; Hess, W.R. [Association EURATOM-CEA sur la Fusion Controlee, St-Paul-lez-Durance (France). Centre d`Etudes de Cadarache

    1994-09-01

    The authors have examined a {sup 3}P {yields} {sup 3}S multiplet of C III in Tore Supra in order to assess the possibility of determining the ion temperatures from transitions where the Zeeman effect cannot be neglected compared to the Doppler broadening. The preliminary studies lead them to believe that with good quality data the temperatures can be determined within about 20% in the 20--30 eV range and within about 50% in the neighborhood of 5 eV by fitting the entire multiplet rather than a semi-isolated feature, even though certain parameters important for the analysis, such as polarization effects of the optics, are not well characterized. In order to quantify these conclusions more precisely, future work will concentrate on developing numerical fitting routines and on examining the validity of the assumption that the distribution function for low ionization stages is Maxwellian.

  18. Determination of ion temperatures from Zeeman broadened spectral lines in the edge of Tore Supra

    International Nuclear Information System (INIS)

    Klepper, C.C.; Isler, R.C.; Tobin, S.J.; Hogan, J.T.; Hess, W.R.

    1994-01-01

    The authors have examined a 3 P → 3 S multiplet of C III in Tore Supra in order to assess the possibility of determining the ion temperatures from transitions where the Zeeman effect cannot be neglected compared to the Doppler broadening. The preliminary studies lead them to believe that with good quality data the temperatures can be determined within about 20% in the 20--30 eV range and within about 50% in the neighborhood of 5 eV by fitting the entire multiplet rather than a semi-isolated feature, even though certain parameters important for the analysis, such as polarization effects of the optics, are not well characterized. In order to quantify these conclusions more precisely, future work will concentrate on developing numerical fitting routines and on examining the validity of the assumption that the distribution function for low ionization stages is Maxwellian

  19. Heterogeneous cellular networks

    CERN Document Server

    Hu, Rose Qingyang

    2013-01-01

    A timely publication providing coverage of radio resource management, mobility management and standardization in heterogeneous cellular networks The topic of heterogeneous cellular networks has gained momentum in industry and the research community, attracting the attention of standardization bodies such as 3GPP LTE and IEEE 802.16j, whose objectives are looking into increasing the capacity and coverage of the cellular networks. This book focuses on recent progresses,  covering the related topics including scenarios of heterogeneous network deployment, interference management i

  20. Cellular decomposition in vikalloys

    International Nuclear Information System (INIS)

    Belyatskaya, I.S.; Vintajkin, E.Z.; Georgieva, I.Ya.; Golikov, V.A.; Udovenko, V.A.

    1981-01-01

    Austenite decomposition in Fe-Co-V and Fe-Co-V-Ni alloys at 475-600 deg C is investigated. The cellular decomposition in ternary alloys results in the formation of bcc (ordered) and fcc structures, and in quaternary alloys - bcc (ordered) and 12R structures. The cellular 12R structure results from the emergence of stacking faults in the fcc lattice with irregular spacing in four layers. The cellular decomposition results in a high-dispersion structure and magnetic properties approaching the level of well-known vikalloys [ru

  1. Cellular Reflectarray Antenna

    Science.gov (United States)

    Romanofsky, Robert R.

    2010-01-01

    The cellular reflectarray antenna is intended to replace conventional parabolic reflectors that must be physically aligned with a particular satellite in geostationary orbit. These arrays are designed for specified geographical locations, defined by latitude and longitude, each called a "cell." A particular cell occupies nominally 1,500 square miles (3,885 sq. km), but this varies according to latitude and longitude. The cellular reflectarray antenna designed for a particular cell is simply positioned to align with magnetic North, and the antenna surface is level (parallel to the ground). A given cellular reflectarray antenna will not operate in any other cell.

  2. Recent development of cellular manufacturing systems

    Indian Academy of Sciences (India)

    be manufactured in a cell, and the machines, which will comprise that cell, can be ... approaches for the CF problem which is referred to as Production Flow Analysis (PFA). ... programming model of cellular manufacturing system design which ...

  3. The use of global transcriptional analysis to reveal the biological and cellular events involved in distinct development phases of Trichophyton rubrum conidial germination

    Directory of Open Access Journals (Sweden)

    Ding Guohui

    2007-04-01

    Full Text Available Abstract Background Conidia are considered to be the primary cause of infections by Trichophyton rubrum. Results We have developed a cDNA microarray containing 10250 ESTs to monitor the transcriptional strategy of conidial germination. A total of 1561 genes that had their expression levels specially altered in the process were obtained and hierarchically clustered with respect to their expression profiles. By functional analysis, we provided a global view of an important biological system related to conidial germination, including characterization of the pattern of gene expression at sequential developmental phases, and changes of gene expression profiles corresponding to morphological transitions. We matched the EST sequences to GO terms in the Saccharomyces Genome Database (SGD. A number of homologues of Saccharomyces cerevisiae genes related to signalling pathways and some important cellular processes were found to be involved in T. rubrum germination. These genes and signalling pathways may play roles in distinct steps, such as activating conidial germination, maintenance of isotropic growth, establishment of cell polarity and morphological transitions. Conclusion Our results may provide insights into molecular mechanisms of conidial germination at the cell level, and may enhance our understanding of regulation of gene expression related to the morphological construction of T. rubrum.

  4. Analysis of A549 cell proteome alteration in response to recombinant influenza A virus nucleoprotein and its interaction with cellular proteins, a preliminary study.

    Science.gov (United States)

    Kumar, D; Tiwari, K; Rajala, M S

    Influenza A virus undergoes frequent changes of antigenicity and contributes to seasonal epidemics or unpredictable pandemics. Nucleoprotein, encoded by gene segment 5, is an internal protein of the virus and is conserved among strains of different host origins. In the current study, we analyzed the differentially expressed proteins in A549 cells transiently transfected with the recombinant nucleoprotein of influenza A virus by 2D gel electrophoresis. The resolved protein spots on gel were identified by MALDI-TOF/Mass spectrometry analysis. The majority of the host proteins detected to be differentially abundant in recombinant nucleoprotein-expressing cells as compared to vector-transfected cells are the proteins of metabolic pathways, glycolytic enzymes, molecular chaperones and cytoskeletal proteins. We further demonstrated the interaction of virus nucleoprotein with some of the identified host cellular proteins. In vitro binding assay carried out using the purified recombinant nucleoprotein (pET29a+NP-His) and A549 cell lysate confirmed the interaction between nucleoprotein and host proteins, such as alpha enolase 1, pyruvate kinase and β-actin. The preliminary data of our study provides the information on virus nucleoprotein interaction with proteins involved in glycolysis. However, studies are ongoing to understand the significance of these interactions in modulating the host factors during virus replication.

  5. Cellular internalization and morphological analysis after intravenous injection of a highly hydrophilic octahedral rhenium cluster complex - a new promising X-ray contrast agent.

    Science.gov (United States)

    Krasilnikova, Anna A; Solovieva, Anastasiya O; Trifonova, Kristina E; Brylev, Konstantin A; Ivanov, Anton A; Kim, Sung-Jin; Shestopalov, Michael A; Fufaeva, Maria S; Shestopalov, Alexander M; Mironov, Yuri V; Poveshchenko, Alexander F; Shestopalova, Lidia V

    2016-11-01

    The octahedral cluster compound Na 2 H 8 [{Re 6 Se 8 }(P(C 2 H 4 CONH 2 )(C 2 H 4 COO) 2 ) 6 ] has been shown to be highly radio dense, thus becoming a promising X-ray contrast agent. It was also shown that this compound had low cytotoxic effect in vitro, low acute toxicity in vivo and was eliminated rapidly from the body through the urinary tract. The present contribution describes a more detailed cellular internalization assay and morphological analysis after intravenous injection of this hexarhenium cluster compound at different doses. The median lethal dose (LD 50 ) of intravenously administrated compound was calculated (4.67 ± 0.69 g/kg). Results of the study clearly indicated that the cluster complex H n [{Re 6 Se 8 }(P(C 2 H 4 CONH 2 )(C 2 H 4 COO) 2 ) 6 ] n-10 was not internalized into cells in vitro and induced only moderate morphological alterations of kidneys at high doses without any changes in morphology of liver, spleen, duodenum, or heart of mice. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

  6. Study of Compton broadening due to electron-photon scattering

    Directory of Open Access Journals (Sweden)

    Srinivasa Rao M.

    2010-01-01

    Full Text Available We have investigated the effects of Compton broadening due to electron-photon scattering in hot stellar atmospheres. A purely electron-photon scattering media is assumed to have plane parallel geometry with an input radia­tion field localized on one side of the slab. The method is based on the discrete space theory of radiative transfer for the intensity of emitted radiation. The solution is developed to study the importance of scattering of radiation by free electrons in high temperature stellar atmospheres which produces a brodening and shift in spectral lines because of the Compton effect and the Doppler effect arising from mass and thermal motions of scattering electrons. It is noticed that the Comptonized spectrum depends on three parameters: the optical depth of the medium, the temperature of the thermal electrons and the viewing angle. We also showed that the Compton effect produces red shift and asymmetry in the line. These two effects increase as the optical depth increases. It is also noticed that the emergent specific intensities become completely asymmetric for higher optical depths.

  7. Study of Compton Broadening Due to Electron-Photon Scattering

    Directory of Open Access Journals (Sweden)

    Srinivasa Rao, M.

    2010-06-01

    Full Text Available We have investigated the effects of Compton broadening due to electron-photon scattering in hot stellar atmospheres. A purely electron-photon scattering media is assumed to have plane parallel geometry with an input radiation field localized on one side of the slab. The method is based on the discrete space theory of radiative transfer for the intensity of emitted radiation.The solution is developed to study the importance of scattering of radiation by free electrons in high temperature stellar atmospheres which produces a brodening and shift in spectral lines because of the Compton effect and the Doppler effect arising from mass and thermal motions of scattering electrons.It is noticed that the Comptonized spectrum depends on three parameters: the optical depth of the medium, the temperature of the thermal electrons and the viewing angle.We also showed that the Compton effect produces red shift and asymmetry in the line. These two effects increase as the optical depth increases. It is also noticed that the emergent specific intensities become completely asymmetric for higher optical depths.

  8. Dynamic Stark broadening as the Dicke narrowing effect

    International Nuclear Information System (INIS)

    Calisti, A.; Mosse, C.; Ferri, S.; Talin, B.; Rosmej, F.; Bureyeva, L. A.; Lisitsa, V. S.

    2010-01-01

    A very fast method to account for charged particle dynamics effects in calculations of spectral line shape emitted by plasmas is presented. This method is based on a formulation of the frequency fluctuation model (FFM), which provides an expression of the dynamic line shape as a functional of the static distribution of frequencies. Thus, the main numerical work rests on the calculation of the quasistatic Stark profile. This method for taking into account ion dynamics allows a very fast and accurate calculation of Stark broadening of atomic hydrogen high-n series emission lines. It is not limited to hydrogen spectra. Results on helium-β and Lyman-α lines emitted by argon in microballoon implosion experiment conditions compared with experimental data and simulation results are also presented. The present approach reduces the computer time by more than 2 orders of magnitude as compared with the original FFM with an improvement of the calculation precision, and it opens broad possibilities for its application in spectral line-shape codes.

  9. Collisional broadening of alkali doublets by helium perturbers

    Energy Technology Data Exchange (ETDEWEB)

    Mullamphy, D F T [School of Mathematics, Physics and Information Technology, James Cook University, Townsville 4811 (Australia); Peach, G [Department of Physics and Astronomy, University College London WC1E 6BT (United Kingdom); Venturi, V [School of Mathematics, Physics and Information Technology, James Cook University, Townsville 4811 (Australia); Whittingham, I B [School of Mathematics, Physics and Information Technology, James Cook University, Townsville 4811 (Australia); Gibson, S J [School of Mathematics, Physics and Information Technology, James Cook University, Townsville 4811 (Australia)

    2007-03-28

    We report results for the Lorentzian profiles of the Li I, Na I and K I doublets and the Na I subordinate doublet broadened by helium perturbers for temperatures up to 3000 K. They have been obtained from a fully quantum-mechanical close-coupling description of the colliding atoms, the Baranger theory of line shapes and new ab initio potentials for the alkali-helium interaction. For all lines except the 769.9 nm K I line, the temperature dependence of the widths over the range 70 {<=} T {<=} 3000 K is accurately represented by the power law form w = aT{sup bb} with 0.38 < b < 0.43. The 769.9 nm K I line has this form for 500 {<=} T {<=} 3000 K with b having the higher value of 0.49. Although the shifts have a more complex temperature dependence, they all have the general feature of increasing with temperature above T {approx} 500 K apart from the 769.9 K I line whose shift decreases with temperature.

  10. Magnetic Field Measurements In Magnetized Plasmas Using Zeeman Broadening Diagnostics

    Science.gov (United States)

    Haque, Showera; Wallace, Matthew; Presura, Radu; Neill, Paul

    2017-10-01

    The Zeeman effect has been used to measure the magnetic field in high energy density plasmas. This method is limited when plasma conditions are such that the line broadening due to the high plasma density and temperature surpasses the Zeeman splitting. We have measured magnetic fields in magnetized laser plasmas under conditions where the Zeeman splitting was not spectrally resolved. The magnetic field strength was determined from the difference in widths of two doublet components, using an idea proposed by Tessarin et al. (2011). Time-gated spectra with one-dimensional space-resolution were obtained at the Nevada Terawatt Facility for laser plasmas created by 20 J, 1 ns Leopard laser pulses, and expanding in the azimuthal magnetic field produced by the 0.6 MA Zebra pulsed power generator. We explore the response of the Al III 4s 2S1/2 - 4p 2P1 / 2 , 3 / 2 doublet components to the external magnetic field spatially along the plasma. Radial magnetic field and electron density profiles were measured within the plasma plume. This work was supported by the DOE/OFES Grant DE-SC0008829 and DOE/NNSA contract DE-FC52-06NA27616.

  11. Broadening Participation: Mentoring Community College Students in a Geoscience REU

    Science.gov (United States)

    Smith, M.; Osborn, J.

    2015-12-01

    Increasingly, REUs are recruiting from community colleges as a means of broadening participation of underrepresented minorities, women, and low-income students in STEM. As inclusion of community college students becomes normalized, defining the role of science faculty and preparing them to serve as mentors to community college students is a key component of well-designed programs. This session will present empirical research regarding faculty mentoring in the first two years of an NSF-REU grant to support community college students in a university's earth and environmental science labs. Given the documented benefits of undergraduate research on students' integration into the scientific community and their career trajectory in STEM, the focus of the investigation has been on the processes and impact of mentoring community college STEM researchers at a university serving a more traditionally privileged population; the degree to which the mentoring relationships have addressed community college students needs including their emotional, cultural and resource needs; and gaps in mentor training and the mentoring relationship identified by mentors and students.

  12. On broadened definitions of instability for stars in thermal imbalance

    International Nuclear Information System (INIS)

    Simon, N.R.

    1977-01-01

    The classical theory of stability of dynamical systems is employed to demonstrate that traditional definitions of pulsational instability cannot be directly applied to stars in thermal imbalance. In particular, it is shown that, for the case of thermal imbalance, pulsational displacements and pulsational velocities have separate and distinct e-folding times. This being true, a broadened set of definitions becomes necessary, and such a set is formulated again with reference to the classical theory. In accordance with the new definitions, it is argued that the development of observable pulsations requires as a necessary condition infinitesimal instability of both absolute displacement and velocity. If either one is unstable without the other, this constitutes a class of (probably) non-pulsational instability, not previously treated in the astrophysical literature. Finally, it is shown that the stability of stars in thermal imbalance may be evaluated according to the present definitions by employing either of two existing theories - the energy approach due to Demaret (1974; 1975; 1976) or the small perturbation technique of Cox et al. (1973). (Auth.)

  13. Workshops Without Walls: broadening access to science around the world.

    Directory of Open Access Journals (Sweden)

    Betül K Arslan

    2011-08-01

    Full Text Available The National Aeronautics and Space Administration (NASA Astrobiology Institute (NAI conducted two "Workshops Without Walls" during 2010 that enabled global scientific exchange--with no travel required. The second of these was on the topic "Molecular Paleontology and Resurrection: Rewinding the Tape of Life." Scientists from diverse disciplines and locations around the world were joined through an integrated suite of collaborative technologies to exchange information on the latest developments in this area of origin of life research. Through social media outlets and popular science blogs, participation in the workshop was broadened to include educators, science writers, and members of the general public. In total, over 560 people from 31 US states and 30 other nations were registered. Among the scientific disciplines represented were geochemistry, biochemistry, molecular biology and evolution, and microbial ecology. We present this workshop as a case study in how interdisciplinary collaborative research may be fostered, with substantial public engagement, without sustaining the deleterious environmental and economic impacts of travel.

  14. Subjective Positive and Negative Sleep Variables Differentially Affect Cellular Immune Activity in a Breast Cancer Survivor: A Time-series Analysis Approach

    Directory of Open Access Journals (Sweden)

    Magdalena Singer

    2018-01-01

    Full Text Available This study on a breast cancer survivor suffering from cancer-related fatigue (CaRF and depression investigated the bidirectional relationship between cellular immune activity and subjective sleep. The 49-year-old patient (breast cancer diagnosis 5 years before the study, currently in remission collected her full urine output for 28 days in 12-h intervals (8:00 p.m. to 8:00 a.m. and 8:00 a.m. to 8:00 p.m.. These urine samples were used to determine urinary neopterin (cellular immune activation marker and creatinine concentrations via high-pressure liquid chromatography (HPLC. Each morning, the patient answered questions on five sleep variables: sleep quality (SQ, sleep recreational value (SRV, total sleep time (TST, total wake time (TWT, and awakenings during sleep period (ADS. For the purpose of this study, the time series of the nighttime urinary neopterin levels and the five sleep variables were determined. Using centered moving average (CMA smoothing and cross-correlational analysis, this study showed that increases in the positive sleep variables SQ and SRV were followed by urinary neopterin concentration decreases after 96–120 h (SQ, lag 4: r = −0.411; p = 0.044; SRV: lag 4: r = −0.472; p = 0.021 and 120–144 h (SRV, lag 5: r = −0.464; p = 0.026. Increases in the negative sleep variable TWT, by contrast, were followed by increases in urinary neopterin concentrations 72–96 h later (lag 3: r = 0.522; p = 0.009. No systematic effects in the other direction, i.e., from urinary neopterin levels to sleep, were observed in this study. Although preliminary, the findings of this study highlight the benefit of carefully investigating temporal delays and directions of effects when studying the dynamic relationship between sleep and immune variables in the natural context of everyday life.

  15. Microbial Culturomics Broadens Human Vaginal Flora Diversity: Genome Sequence and Description of Prevotella lascolaii sp. nov. Isolated from a Patient with Bacterial Vaginosis.

    Science.gov (United States)

    Diop, Khoudia; Diop, Awa; Levasseur, Anthony; Mediannikov, Oleg; Robert, Catherine; Armstrong, Nicholas; Couderc, Carine; Bretelle, Florence; Raoult, Didier; Fournier, Pierre-Edouard; Fenollar, Florence

    2018-03-01

    Microbial culturomics is a new subfield of postgenomic medicine and omics biotechnology application that has broadened our awareness on bacterial diversity of the human microbiome, including the human vaginal flora bacterial diversity. Using culturomics, a new obligate anaerobic Gram-stain-negative rod-shaped bacterium designated strain khD1 T was isolated in the vagina of a patient with bacterial vaginosis and characterized using taxonogenomics. The most abundant cellular fatty acids were C 15:0 anteiso (36%), C 16:0 (19%), and C 15:0 iso (10%). Based on an analysis of the full-length 16S rRNA gene sequences, phylogenetic analysis showed that the strain khD1 T exhibited 90% sequence similarity with Prevotella loescheii, the phylogenetically closest validated Prevotella species. With 3,763,057 bp length, the genome of strain khD1 T contained (mol%) 48.7 G + C and 3248 predicted genes, including 3194 protein-coding and 54 RNA genes. Given the phenotypical and biochemical characteristic results as well as genome sequencing, strain khD1 T is considered to represent a novel species within the genus Prevotella, for which the name Prevotella lascolaii sp. nov. is proposed. The type strain is khD1 T ( = CSUR P0109, = DSM 101754). These results show that microbial culturomics greatly improves the characterization of the human microbiome repertoire by isolating potential putative new species. Further studies will certainly clarify the microbial mechanisms of pathogenesis of these new microbes and their role in health and disease. Microbial culturomics is an important new addition to the diagnostic medicine toolbox and warrants attention in future medical, global health, and integrative biology postgraduate teaching curricula.

  16. Pressure broadening and pressure shift of diatomic iodine at 675 nm

    Science.gov (United States)

    Wolf, Erich N.

    Doppler-limited, steady-state, linear absorption spectra of 127 I2 (diatomic iodine) near 675 nm were recorded with an internally-referenced wavelength modulation spectrometer, built around a free-running diode laser using phase-sensitive detection, and capable of exceeding the signal-to-noise limit imposed by the 12-bit data acquisition system. Observed I2 lines were accounted for by published spectroscopic constants. Pressure broadening and pressure shift coefficients were determined respectively from the line-widths and line-center shifts as a function of buffer gas pressure, which were determined from nonlinear regression analysis of observed line shapes against a Gaussian-Lorentzian convolution line shape model. This model included a linear superposition of the I2 hyperfine structure based on changes in the nuclear electric quadrupole coupling constant. Room temperature (292 K) values of these coefficients were determined for six unblended I 2 lines in the region 14,817.95 to 14,819.45 cm-1 for each of the following buffer gases: the atoms He, Ne, Ar, Kr, and Xe; and the molecules H2, D2, N2, CO2, N2O, air, and H2O. These coefficients were also determined at one additional temperature (388 K) for He and CO2, and at two additional temperatures (348 and 388 K) for Ar. Elastic collision cross-sections were determined for all pressure broadening coefficients in this region. Room temperature values of these coefficients were also determined for several low-J I2 lines in the region 14,946.17 to 14,850.29 cm-1 for Ar. A line shape model, obtained from a first-order perturbation solution of the time-dependent Schrodinger equation for randomly occurring interactions between a two-level system and a buffer gas treated as step-function potentials, reveals a relationship between the ratio of pressure broadening to pressure shift coefficients and a change in the wave function phase-factor, interpreted as reflecting the "cause and effect" of state-changing events in the

  17. Verification of the accuracy of Doppler broadened, self-shielded multigroup cross sections for fast power reactor applications

    International Nuclear Information System (INIS)

    Ganesan, S.; Gopalakrishnan, V.; Ramanadhan, M.M.; Cullen, D.E.

    1988-01-01

    Verification results for Doppler broadening and self-shielding are presented. One of the important results presented is that the original SIGMA1 method of numerical Doppler broadening has now been demonstrated to be inaccurate and not capable of producing results to within required accuracies. Fortunately, due to this study, the SIGMA1 method has been significantly improved and the new SIGMA1 is now capable of producing results to within required accuracies. Although this paper presents results based upon using only one code system, it is important to realize that the original SIGMA1 method is presently used in many cross-section processing code systems; the results of this paper indicate that unless these other code systems are updated to include the new SIGMA1 method, the results produced by these code systems could be very inaccurate. The objectives of the IAEA nuclear data processing code verification project are reviewed as well as the requirements for the accuracy of calculation of Doppler coefficients and the present status of these calculations. The initial results of Doppler broadening and self-shielding calculations are presented and the inconsistency of the results which led to the discovery of errors in the original SIGMA1 method of Doppler broadening are pointed out. Analysis of the errors found and improvements in the SIGMA1 method are presented. Improved results are presented in order to demonstrate that the new SIGMA1 method can produce results within required accuracies. Guidelines are presented to limit the uncertainty introduced due to cross-section processing in order to balance available computer resources to accuracy requirements. Finally cross-section processing code users are invited to participate in the IAEA processing code verification project in order to verify the accuracy of their calculated results. (author)

  18. Magnetohydrodynamics cellular automata

    International Nuclear Information System (INIS)

    Hatori, Tadatsugu.

    1990-02-01

    There has been a renewal of interest in cellular automata, partly because they give an architecture for a special purpose computer with parallel processing optimized to solve a particular problem. The lattice gas cellular automata are briefly surveyed, which are recently developed to solve partial differential equations such as hydrodynamics or magnetohydrodynamics. A new model is given in the present paper to implement the magnetic Lorentz force in a more deterministic and local procedure than the previous one. (author)

  19. Epigenetics and Cellular Metabolism

    OpenAIRE

    Wenyi Xu; Fengzhong Wang; Zhongsheng Yu; Fengjiao Xin

    2016-01-01

    Living eukaryotic systems evolve delicate cellular mechanisms for responding to various environmental signals. Among them, epigenetic machinery (DNA methylation, histone modifications, microRNAs, etc.) is the hub in transducing external stimuli into transcriptional response. Emerging evidence reveals the concept that epigenetic signatures are essential for the proper maintenance of cellular metabolism. On the other hand, the metabolite, a main environmental input, can also influence the proce...

  20. Modeling cellular systems

    CERN Document Server

    Matthäus, Franziska; Pahle, Jürgen

    2017-01-01

    This contributed volume comprises research articles and reviews on topics connected to the mathematical modeling of cellular systems. These contributions cover signaling pathways, stochastic effects, cell motility and mechanics, pattern formation processes, as well as multi-scale approaches. All authors attended the workshop on "Modeling Cellular Systems" which took place in Heidelberg in October 2014. The target audience primarily comprises researchers and experts in the field, but the book may also be beneficial for graduate students.

  1. Magnetohydrodynamic cellular automata

    Energy Technology Data Exchange (ETDEWEB)

    Hatori, Tadatsugu [National Inst. for Fusion Science, Nagoya (Japan)

    1990-03-01

    There has been a renewal of interest in cellular automata, partly because they give an architecture for a special purpose computer with parallel processing optimized to solve a particular problem. The lattice gas cellular automata are briefly surveyed, which are recently developed to solve partial differential equations such as hydrodynamics or magnetohydrodynamics. A new model is given in the present paper to implement the magnetic Lorentz force in a more deterministic and local procedure than the previous one. (author).

  2. Magnetohydrodynamic cellular automata

    International Nuclear Information System (INIS)

    Hatori, Tadatsugu

    1990-01-01

    There has been a renewal of interest in cellular automata, partly because they give an architecture for a special purpose computer with parallel processing optimized to solve a particular problem. The lattice gas cellular automata are briefly surveyed, which are recently developed to solve partial differential equations such as hydrodynamics or magnetohydrodynamics. A new model is given in the present paper to implement the magnetic Lorentz force in a more deterministic and local procedure than the previous one. (author)

  3. Quantitative analysis of cellular glutathione by flow cytometry utilizing monochlorobimane: some applications to radiation and drug resistance in vitro and in vivo.

    Science.gov (United States)

    Rice, G C; Bump, E A; Shrieve, D C; Lee, W; Kovacs, M

    1986-12-01

    An assay using a bimane derivative has been developed to detect free glutathione (GSH) in individual viable cells by flow cytometry. Monochlorobimane [syn-(ClCH2CH3)-1,5-diazabicycla[3.30]acta-3,6-diene-2,8-dio ne], itself nonfluorescent, reacts with GSH to form a highly fluorescent derivative. High pressure liquid chromatography analysis showed that, using specific staining conditions, the only low molecular weight fluorescent derivative formed in Chinese hamster ovary cells was that formed with GSH. Very little reaction with protein sulfhydryls was observed. Rates of GSH depletion in Chinese hamster ovary cells exposed to diethylmaleate were essentially the same, whether measured by relative fluorescence intensity, by flow cytometry or by enzymatic assay on cellular extracts. This method was shown to be useful for measurement of GSH resynthesis, uptake, and depletion by prolonged hypoxia and misonidazole treatment. Since measurements are made on individual cells, cell-to-cell variation and populational heterogeneity in GSH content are revealed by flow cytometry. Although under most conditions in vitro GSH content is relatively homogeneous, under certain circumstances, such as release from hypoxia, heterogeneity in populational GSH levels was observed. The significance of this heterogeneity is discussed in regard to the induction of gene amplification and drug resistance by transient hypoxia. Numerous subclones of Chinese hamster ovary cells selected by growth in Adriamycin or methotrexate-containing medium express elevated levels of GSH per cell. The method was extended to quantitate the GSH content of cells excised from EMT-6/SF mouse tumors that had been treated in vivo with L-buthionine-S-R-sulfoximine, an inhibitor of GSH synthesis. The bivariate analysis (forward angle light scatter versus monochlorobimane fluorescence) of cells derived from these tumors gave excellent resolution of normal and tumor cells and demonstrated extensive heterogeneity in the tumor

  4. Cellular MR Imaging

    Directory of Open Access Journals (Sweden)

    Michel Modo

    2005-07-01

    Full Text Available Cellular MR imaging is a young field that aims to visualize targeted cells in living organisms. In order to provide a different signal intensity of the targeted cell, they are either labeled with MR contrast agents in vivo or prelabeled in vitro. Either (ultrasmall superparamagnetic iron oxide [(USPIO] particles or (polymeric paramagnetic chelates can be used for this purpose. For in vivo cellular labeling, Gd3+- and Mn2+- chelates have mainly been used for targeted hepatobiliary imaging, and (USPIO-based cellular imaging has been focused on imaging of macrophage activity. Several of these magneto-pharmaceuticals have been FDA-approved or are in late-phase clinical trials. As for prelabeling of cells in vitro, a challenge has been to induce a sufficient uptake of contrast agents into nonphagocytic cells, without affecting normal cellular function. It appears that this issue has now largely been resolved, leading to an active research on monitoring the cellular biodistribution in vivo following transplantation or transfusion of these cells, including cell migration and trafficking. New applications of cellular MR imaging will be directed, for instance, towards our understanding of hematopoietic (immune cell trafficking and of novel guided (stem cell-based therapies aimed to be translated to the clinic in the future.

  5. Line broadening mechanisms of the orth-H2 pair spectrum

    International Nuclear Information System (INIS)

    Statt, B.W.; Hardy, W.N.

    1980-01-01

    Three broadening mechanisms for the ortho pair spectrum in solid hydrogen are investigated. First, theoretical predictions of the phonon induced lifetime broadening are presented. Next a theory is developed which gives the inhomogeneous broadening due to the presence of ortho molecules surrounding the pairs. An unexpected result is that certain lines remain unbroadened, at least to within the approximation made. Strain effects due to isotopic mass defect impurities are also considered. These predictions are then compared with experimental results. No temperature dependence of the lineshapes is observed, setting an upper limit on the phonon broadening contribution to the linewidth. This limit is an order of magnitude lower than the theory predicts. The predictions of the ortho broadening theory, on the other hand, are in good agreement with experiment. Samples doped with isotopic impurities are also investigated. (auth)

  6. Stark broadening parameters and transition probabilities of persistent lines of Tl II

    Science.gov (United States)

    de Andrés-García, I.; Colón, C.; Fernández-Martínez, F.

    2018-05-01

    The presence of singly ionized thallium in the stellar atmosphere of the chemically peculiar star χ Lupi was reported by Leckrone et al. in 1999 by analysis of its stellar spectrum obtained with the Goddard High Resolution Spectrograph (GHRS) on board the Hubble Space Telescope. Atomic data about the spectral line of 1307.50 Å and about the hyperfine components of the spectral lines of 1321.71 Å and 1908.64 Å were taken from different sources and used to analyse the isotopic abundance of thallium II in the star χ Lupi. From their results the authors concluded that the photosphere of the star presents an anomalous isotopic composition of Tl II. A study of the atomic parameters of Tl II and of the broadening by the Stark effect of its spectral lines (and therefore of the possible overlaps of these lines) can help to clarify the conclusions about the spectral abundance of Tl II in different stars. In this paper we present calculated values of the atomic transition probabilities and Stark broadening parameters for 49 spectral lines of Tl II obtained by using the Cowan code including core polarization effects and the Griem semiempirical approach. Theoretical values of radiative lifetimes for 11 levels (eight with experimental values in the bibliography) are calculated and compared with the experimental values in order to test the quality of our results. Theoretical trends of the Stark width and shift parameters versus the temperature for spectral lines of astrophysical interest are displayed. Trends of our calculated Stark width for the isoelectronic sequence Tl II-Pb III-Bi IV are also displayed.

  7. Some Strategies From SOARS for Broadening Participation in the Geosciences

    Science.gov (United States)

    Haacker-Santos, R.; Pandya, R.; Calhoun, A.

    2006-12-01

    The mission of SOARS® is to broaden participation in the geosciences by increasing the number of Black or African-American, American Indian or Alaska Native, Hispanic or Latino, female, and first-generation college students who enroll and succeed in graduate school in the atmospheric and related sciences. This mission contributes to national goals of developing a diverse, internationally competitive, and globally engaged workforce of scientists and engineers. SOARS is a multiyear undergraduate-to-graduate bridge program that uses three strategies: a strong learning community, a multidimensional mentoring program, and experience in research. Our presentation will describe SOARS' strategies in more detail, with an eye toward how such strategies might be adapted for other programs. To do this, we will draw upon recent research that documents how these strategies can be successfully implemented, including: - A survey of over 124 higher-education based STEM programs - A workshop report from the American Chemical Society emphasizing cooperation between industry and academia - An independent ethnographic study of the Significant Opportunities in Atmospheric and Related Science (SOARS®) program, administered by the University Corporation for Atmospheric Research (UCAR) In the 11 years since SOARS' founding, 104 students have participated in the program. Of those participants, 16 are still enrolled as undergraduates, and 60 have gone on to purse graduate school in STEM. Overall, this represents a success rate 91%. Of the 35 SOARS participants who have entered the workforce, 26 are in STEM related disciplines. Four SOARS participants have already earned their PhD, and additional 17 are in PhD programs. Seventeen protégés have earned Master's and entered the workforce, and 17 more protégés are enrolled in Master's programs.

  8. How Might Industry Governance Be Broadened To Include Nonproliferation

    International Nuclear Information System (INIS)

    Hund, Gretchen; Seward, Amy M.

    2009-01-01

    Broadening industry governance to support nonproliferation could provide significant new leverage in preventing the spread/diversion of nuclear, radiological, or dual-use material or technology that could be used in making a nuclear or radiological weapon. Industry is defined broadly to include (1) the nuclear industry, (2) dual-use industries, and (3) radioactive source manufacturers and selected radioactive source-user industries worldwide. This paper describes how industry can be an important first line of defense in detecting and thwarting proliferation, such as an illicit trade network or an insider theft case, by complementing and strengthening existing governmental efforts. For example, the dual-use industry can play a critical role by providing export, import, or security control information that would allow a government or the International Atomic Energy Agency (IAEA) to integrate this information with safeguards, export, import, and physical protection information it has to create a more complete picture of the potential for proliferation. Because industry is closest to users of the goods and technology that could be illicitly diverted throughout the supply chain, industry information can potentially be more timely and accurate than other sources of information. Industry is in an ideal position to help ensure that such illicit activities are detected. This role could be performed more effectively if companies worked together within a particular industry to promote nonproliferation by implementing an industry-wide self-regulation program. Performance measures could be used to ensure their materials and technologies are secure throughout the supply chain and that customers are legitimately using and/or maintaining oversight of these items. Nonproliferation is the overarching driver that industry needs to consider in adopting and implementing a self-regulation approach. A few foreign companies have begun such an approach to date; it is believed that

  9. Hydrophilic interaction liquid chromatography-tandem mass spectrometry quantitative method for the cellular analysis of varying structures of gemini surfactants designed as nanomaterial drug carriers.

    Science.gov (United States)

    Donkuru, McDonald; Michel, Deborah; Awad, Hanan; Katselis, George; El-Aneed, Anas

    2016-05-13

    Diquaternary gemini surfactants have successfully been used to form lipid-based nanoparticles that are able to compact, protect, and deliver genetic materials into cells. However, what happens to the gemini surfactants after they have released their therapeutic cargo is unknown. Such knowledge is critical to assess the quality, safety, and efficacy of gemini surfactant nanoparticles. We have developed a simple and rapid liquid chromatography electrospray ionization-tandem mass spectrometry (LC-ESI-MS/MS) method for the quantitative determination of various structures of gemini surfactants in cells. Hydrophilic interaction liquid chromatography (HILIC) was employed allowing for a short simple isocratic run of only 4min. The lower limit of detection (LLOD) was 3ng/mL. The method was valid to 18 structures of gemini surfactants belonging to two different structural families. A full method validation was performed for two lead compounds according to USFDA guidelines. The HILIC-MS/MS method was compatible with the physicochemical properties of gemini surfactants that bear a permanent positive charge with both hydrophilic and hydrophobic elements within their molecular structure. In addition, an effective liquid-liquid extraction method (98% recovery) was employed surpassing previously used extraction methods. The analysis of nanoparticle-treated cells showed an initial rise in the analyte intracellular concentration followed by a maximum and a somewhat more gradual decrease of the intracellular concentration. The observed intracellular depletion of the gemini surfactants may be attributable to their bio-transformation into metabolites and exocytosis from the host cells. Obtained cellular data showed a pattern that grants additional investigations, evaluating metabolite formation and assessing the subcellular distribution of tested compounds. Copyright © 2016 Elsevier B.V. All rights reserved.

  10. Determination of intra-axial brain tumors cellularity through the analysis of T2 Relaxation time of brain tumors before surgery using MATLAB software.

    Science.gov (United States)

    Abdolmohammadi, Jamil; Shafiee, Mohsen; Faeghi, Fariborz; Arefan, Douman; Zali, Alireza; Motiei-Langroudi, Rouzbeh; Farshidfar, Zahra; Nazarlou, Ali Kiani; Tavakkoli, Ali; Yarham, Mohammad

    2016-08-01

    Timely diagnosis of brain tumors could considerably affect the process of patient treatment. To do so, para-clinical methods, particularly MRI, cannot be ignored. MRI has so far answered significant questions regarding tumor characteristics, as well as helping neurosurgeons. In order to detect the tumor cellularity, neuro-surgeons currently have to sample specimens by biopsy and then send them to the pathology unit. The aim of this study is to determine the tumor cellularity in the brain. In this cross-sectional study, 32 patients (18 males and 14 females from 18-77 y/o) were admitted to the neurosurgery department of Shohada-E Tajrish Hospital in Tehran, Iran from April 2012 to February 2014. In addition to routine pulse sequences, T2W Multi echo pulse sequences were taken and the images were analyzed using the MATLAB software to determine the brain tumor cellularity, compared with the biopsy. These findings illustrate the need for more T2 relaxation time decreases, the higher classes of tumors will stand out in the designed table. In this study, the results show T2 relaxation time with a 85% diagnostic weight, compared with the biopsy, to determine the brain tumor cellularity (p<0.05). Our results indicate that the T2 relaxation time feature is the best method to distinguish and present the degree of intra-axial brain tumors cellularity (85% accuracy compared to biopsy). The use of more data is recommended in order to increase the percent accuracy of this techniques.

  11. Cellularized Cellular Solids via Freeze-Casting.

    Science.gov (United States)

    Christoph, Sarah; Kwiatoszynski, Julien; Coradin, Thibaud; Fernandes, Francisco M

    2016-02-01

    The elaboration of metabolically active cell-containing materials is a decisive step toward the successful application of cell based technologies. The present work unveils a new process allowing to simultaneously encapsulate living cells and shaping cell-containing materials into solid-state macroporous foams with precisely controlled morphology. Our strategy is based on freeze casting, an ice templating materials processing technique that has recently emerged for the structuration of colloids into macroporous materials. Our results indicate that it is possible to combine the precise structuration of the materials with cellular metabolic activity for the model organism Saccharomyces cerevisiae. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  12. Epigenetics and Cellular Metabolism

    Directory of Open Access Journals (Sweden)

    Wenyi Xu

    2016-01-01

    Full Text Available Living eukaryotic systems evolve delicate cellular mechanisms for responding to various environmental signals. Among them, epigenetic machinery (DNA methylation, histone modifications, microRNAs, etc. is the hub in transducing external stimuli into transcriptional response. Emerging evidence reveals the concept that epigenetic signatures are essential for the proper maintenance of cellular metabolism. On the other hand, the metabolite, a main environmental input, can also influence the processing of epigenetic memory. Here, we summarize the recent research progress in the epigenetic regulation of cellular metabolism and discuss how the dysfunction of epigenetic machineries influences the development of metabolic disorders such as diabetes and obesity; then, we focus on discussing the notion that manipulating metabolites, the fuel of cell metabolism, can function as a strategy for interfering epigenetic machinery and its related disease progression as well.

  13. Three-dimensional finite-element analysis of the cellular convection phenomena in the Clinch River Breeder Reactor Plant prototype pump

    International Nuclear Information System (INIS)

    Silver, A.H.; Lee, J.Y.

    1983-01-01

    Cellular convection was studied rigorously during the development of the Clinch River Breeder Reactor Plant (CRBRP) Program Pumps. This paper presents the development of a three-dimensional finite-element heat transfer model which accounts for the cellular convection phenomena. A buoyancy driven cellular convection flow pattern is introduced in the annulus region between the upper inner structure and the pump tank. Steady-state thermal data were obtained for several test conditions for argon gas pressures up to 93 psig (741 kPa) and sodium operating temperatures to 1000 0 F (811 0 K). Test temperature distributions on the pump tank and inner structure were correlated with numerical results and excellent agreement was obtained

  14. Wireless Cellular Mobile Communications

    Directory of Open Access Journals (Sweden)

    V. Zalud

    2002-12-01

    Full Text Available In this article is briefly reviewed the history of wireless cellularmobile communications, examined the progress in current secondgeneration (2G cellular standards and discussed their migration to thethird generation (3G. The European 2G cellular standard GSM and itsevolution phases GPRS and EDGE are described somewhat in detail. Thethird generation standard UMTS taking up on GSM/GPRS core network andequipped with a new advanced access network on the basis of codedivision multiple access (CDMA is investigated too. A sketch of theperspective of mobile communication beyond 3G concludes this article.

  15. Effects of defined mixtures of persistent organic pollutants (POPs) on multiple cellular responses in the human hepatocarcinoma cell line, HepG2, using high content analysis screening

    Energy Technology Data Exchange (ETDEWEB)

    Wilson, Jodie [Institute for Global Food Security, School of Biological Sciences, Queen' s University Belfast, Northern Ireland (United Kingdom); Berntsen, Hanne Friis; Zimmer, Karin Elisabeth [Norwegian University of Life Sciences, Oslo (Norway); Frizzell, Caroline [Institute for Global Food Security, School of Biological Sciences, Queen' s University Belfast, Northern Ireland (United Kingdom); Verhaegen, Steven; Ropstad, Erik [Norwegian University of Life Sciences, Oslo (Norway); Connolly, Lisa, E-mail: l.connolly@qub.ac.uk [Institute for Global Food Security, School of Biological Sciences, Queen' s University Belfast, Northern Ireland (United Kingdom)

    2016-03-01

    Persistent organic pollutants (POPs) are toxic substances, highly resistant to environmental degradation, which can bio-accumulate and have long-range atmospheric transport potential. Most studies focus on single compound effects, however as humans are exposed to several POPs simultaneously, investigating exposure effects of real life POP mixtures on human health is necessary. A defined mixture of POPs was used, where the compound concentration reflected its contribution to the levels seen in Scandinavian human serum (total mix). Several sub mixtures representing different classes of POPs were also constructed. The perfluorinated (PFC) mixture contained six perfluorinated compounds, brominated (Br) mixture contained seven brominated compounds, chlorinated (Cl) mixture contained polychlorinated biphenyls and also p,p’-dichlorodiphenyldichloroethylene, hexachlorobenzene, three chlordanes, three hexachlorocyclohexanes and dieldrin. Human hepatocarcinoma (HepG2) cells were used for 2 h and 48 h exposures to the seven mixtures and analysis on a CellInsight™ NXT High Content Screening platform. Multiple cytotoxic endpoints were investigated: cell number, nuclear intensity and area, mitochondrial mass and membrane potential (MMP) and reactive oxygen species (ROS). Both the Br and Cl mixtures induced ROS production but did not lead to apoptosis. The PFC mixture induced ROS production and likely induced cell apoptosis accompanied by the dissipation of MMP. Synergistic effects were evident for ROS induction when cells were exposed to the PFC + Br mixture in comparison to the effects of the individual mixtures. No significant effects were detected in the Br + Cl, PFC + Cl or total mixtures, which contain the same concentrations of chlorinated compounds as the Cl mixture plus additional compounds; highlighting the need for further exploration of POP mixtures in risk assessment. - Highlights: • High content analysis (HCA) is a novel approach for determining toxicity of

  16. Effects of defined mixtures of persistent organic pollutants (POPs) on multiple cellular responses in the human hepatocarcinoma cell line, HepG2, using high content analysis screening

    International Nuclear Information System (INIS)

    Wilson, Jodie; Berntsen, Hanne Friis; Zimmer, Karin Elisabeth; Frizzell, Caroline; Verhaegen, Steven; Ropstad, Erik; Connolly, Lisa

    2016-01-01

    Persistent organic pollutants (POPs) are toxic substances, highly resistant to environmental degradation, which can bio-accumulate and have long-range atmospheric transport potential. Most studies focus on single compound effects, however as humans are exposed to several POPs simultaneously, investigating exposure effects of real life POP mixtures on human health is necessary. A defined mixture of POPs was used, where the compound concentration reflected its contribution to the levels seen in Scandinavian human serum (total mix). Several sub mixtures representing different classes of POPs were also constructed. The perfluorinated (PFC) mixture contained six perfluorinated compounds, brominated (Br) mixture contained seven brominated compounds, chlorinated (Cl) mixture contained polychlorinated biphenyls and also p,p’-dichlorodiphenyldichloroethylene, hexachlorobenzene, three chlordanes, three hexachlorocyclohexanes and dieldrin. Human hepatocarcinoma (HepG2) cells were used for 2 h and 48 h exposures to the seven mixtures and analysis on a CellInsight™ NXT High Content Screening platform. Multiple cytotoxic endpoints were investigated: cell number, nuclear intensity and area, mitochondrial mass and membrane potential (MMP) and reactive oxygen species (ROS). Both the Br and Cl mixtures induced ROS production but did not lead to apoptosis. The PFC mixture induced ROS production and likely induced cell apoptosis accompanied by the dissipation of MMP. Synergistic effects were evident for ROS induction when cells were exposed to the PFC + Br mixture in comparison to the effects of the individual mixtures. No significant effects were detected in the Br + Cl, PFC + Cl or total mixtures, which contain the same concentrations of chlorinated compounds as the Cl mixture plus additional compounds; highlighting the need for further exploration of POP mixtures in risk assessment. - Highlights: • High content analysis (HCA) is a novel approach for determining toxicity of

  17. Application of Energy Window Concept in Doppler Broadening of {sup 238}U Cross Section

    Energy Technology Data Exchange (ETDEWEB)

    Khassnov, Azamat; Choi, Soo Young; Lee, Deok Jung [Ulsan National Institute of Science and Technology, Ulsan (Korea, Republic of)

    2014-10-15

    Currently, the NJOY code is used for construction and Doppler broadening of microscopic cross sections. There exist several methods or formalisms to produce microscopic cross sections and there are also different methods of Doppler broadening. In this paper, Multi-Level Breit-Wigner (MLBW) formalism and the Psi method are used for generation and Doppler broadening of the resonance cross section. Accuracy of the energy window concept applied MLBW (EW MLBW) Doppler broadened cross section was compared with that of the cross section generated by conventional MLBW (Con MLBW) formalism for {sup 2}38U isotope using MATLAB. The conventional method requires Doppler broadening of all resonances, including resonances far from the target energy point, which do not change much with respect to the temperature change. The energy window concept makes Doppler broadening possible with a smaller number of resonances neighboring to the energy point we are interested in, and just adds up 0 K temperature cross sections of other resonances. Multi-level Breit-Wigner formalism and the Doppler broadening method were used to construct microscopic cross sections of {sup 238}U at different temperatures. The energy window concept was applied only for the 1st resonance energy region (4.5∼11.2 eV). The energy window concept demonstrates high competitiveness because the relative differences were less than 0.0016% for all types of cross sections. The advantage of the energy window concept is that the number of resonances broadened for every energy point is significantly reduced, which allows a reduction of computation time by almost 45 % of Doppler broadening time of the cross section generation at temperatures higher than 0 K.

  18. Application of coincidence Doppler-broadening spectroscopy to different carbon phases

    International Nuclear Information System (INIS)

    Ito, Y.; Djourelov, N.; Suzuki, T.; Kondo, K.; Ito, Y.; Shantarovich, V.; Onoe, J.

    2004-01-01

    Coincidence Doppler-broadening spectroscopy was applied to C60 and C70 fullerenes and other carbon phases, such as nanotubes and graphites. Remarkable differences were observed in the Doppler-broadening of the positron annihilation γ-rays in these materials, which reflect the different densities distribution of the momentum for electrons annihilated with positrons. This would be caused by the different composition of the π and σ electrons in annihilation with positrons. This result shows the sensitivity of the coincidence Doppler-broadening method to determine the density distribution of electrons sampled by positrons. (orig.)

  19. The effect of broadened linewidth induced by dispersion on the performance of resonant optical gyroscope

    Science.gov (United States)

    Zhang, Hao; Li, Wenxiu; Han, Peng; Chang, Xiaoyang; Liu, Jiaming; Lin, Jian; Xue, Xia; Zhu, Fang; Yang, Yang; Liu, Xiaojing; Zhang, Xiaofu; Huang, Anping; Xiao, Zhisong; Fang, Jiancheng

    2018-01-01

    Anomalous dispersion enhancement physical mechanism for Sagnac effect is described by special relativity derivation, and three kinds of definitions of minimum detectable angular rate of resonance optical gyroscope (ROG) are compared and the relations among them are investigated. The effect of linewidth broadening induced by anomalous dispersion on the sensitivity of ROG is discussed in this paper. Material dispersion-broadened resonance linewidth deteriorates the performance of a passive ROG and dispersion enhancement effect, while the sensitivity of a structural dispersion ROG is enhanced by two orders of magnitude even considering the dispersion-broadened resonance linewidth.

  20. Quasi-particle lifetime broadening in normal-superconductor junctions with UPt3

    International Nuclear Information System (INIS)

    Wilde, T. de; Argonne National Lab., IL; Klapwijk, T.M.; Rijksuniversiteit Groningen; Rijksuniversiteit Groningen; Jansen, A.G.M.; Heil, J.; Wyder, P.

    1996-01-01

    For the Andreev-reflection process of quasi-particles at a normal-metal-superconductor interface the influence of lifetime broadening of the quasi-particles on the current-voltage characteristics of NS point contacts is analyzed along the lines of the Blonder-Tinkham-Klapwijk model. The anomalous Andreev-reflection spectra obtained for the heavy-fermion compound UPt 3 cannot be explained by lifetime broadening alone. Instead, an anisotropic superconducting order parameter has to be assumed which, if also lifetime broadening is included, leads to a fairly good agreement with the data. (orig.)

  1. Spectral broadening of acoustic tones generated by unmanned aerial vehicles in a turbulent atmosphere

    DEFF Research Database (Denmark)

    Ostashev, Vladimir E.; Wilson, D. K.; Finn, Anthony

    2016-01-01

    The acoustic spectrum emitted by unmanned aerial vehicles (UAVs) and other aircraft can be distorted by propagation through atmospheric turbulence. Since most UAVs are propeller-based, they generate a series of acoustic tones and harmonics. In this paper, spectral broadening of these tones due......, spectral broadening is calculated and analyzed for typical meteorological regimes of the atmospheric boundary layer and different flight trajectories of UAVs. Experimental results are presented and compared with theoretical predictions. Spectral broadening might also provide a means for remotely sensing...

  2. Comparing energy loss and pperpendicular -broadening in perturbative QCD with strong coupling N=4 SYM theory

    International Nuclear Information System (INIS)

    Dominguez, Fabio; Marquet, C.; Mueller, A.H.; Wu Bin; Xiao, Bo-Wen

    2008-01-01

    We compare medium induced energy loss and p perpendicular -broadening in perturbative QCD with that of the trailing string picture of SYM theory. We consider finite and infinite extent matter as well as relativistic heavy quarks which correspond to those being produced in the medium or external to it. When expressed in terms of the appropriate saturation momentum, we find identical parametric forms for energy loss in perturbative QCD and SYM theory. We find simple correspondences between p perpendicular -broadening in QCD and in SYM theory although p perpendicular -broadening is radiation dominated in SYM theory and multiple scattering dominated in perturbative QCD

  3. Radiolabelled cellular blood elements

    International Nuclear Information System (INIS)

    Sinzinger, H.

    1990-01-01

    This book reports on radiolabelled cellular blood elements, covering new advances made during the past several years, in particular the use of Tc-99 as a tracer for blood elements. Coverage extends to several radiolabelled monoclonal antibodies that are specific for blood components and may label blood elements in vivo

  4. Building synthetic cellular organization

    OpenAIRE

    Polka, Jessica K.; Silver, Pamela A.

    2013-01-01

    The elaborate spatial organization of cells enhances, restricts, and regulates protein–protein interactions. However, the biological significance of this organization has been difficult to study without ways of directly perturbing it. We highlight synthetic biology tools for engineering novel cellular organization, describing how they have been, and can be, used to advance cell biology.

  5. The New Cellular Immunology

    Science.gov (United States)

    Claman, Henry N.

    1973-01-01

    Discusses the nature of the immune response and traces many of the discoveries that have led to the present state of knowledge in immunology. The new cellular immunology is directing its efforts toward improving health by proper manipulation of the immune mechanisms of the body. (JR)

  6. Electromagnetic cellular interactions.

    Science.gov (United States)

    Cifra, Michal; Fields, Jeremy Z; Farhadi, Ashkan

    2011-05-01

    Chemical and electrical interaction within and between cells is well established. Just the opposite is true about cellular interactions via other physical fields. The most probable candidate for an other form of cellular interaction is the electromagnetic field. We review theories and experiments on how cells can generate and detect electromagnetic fields generally, and if the cell-generated electromagnetic field can mediate cellular interactions. We do not limit here ourselves to specialized electro-excitable cells. Rather we describe physical processes that are of a more general nature and probably present in almost every type of living cell. The spectral range included is broad; from kHz to the visible part of the electromagnetic spectrum. We show that there is a rather large number of theories on how cells can generate and detect electromagnetic fields and discuss experimental evidence on electromagnetic cellular interactions in the modern scientific literature. Although small, it is continuously accumulating. Copyright © 2010 Elsevier Ltd. All rights reserved.

  7. Genetic Dominance & Cellular Processes

    Science.gov (United States)

    Seager, Robert D.

    2014-01-01

    In learning genetics, many students misunderstand and misinterpret what "dominance" means. Understanding is easier if students realize that dominance is not a mechanism, but rather a consequence of underlying cellular processes. For example, metabolic pathways are often little affected by changes in enzyme concentration. This means that…

  8. Extending breath analysis to the cellular level: current thoughts on the human microbiome and the expression of organic compounds in the human exposome

    Science.gov (United States)

    Human biomarkers are comprised of compounds from cellular metabolism, oxidative stress, and the microbiome of bacteria in the gut, genitourinary, and pulmonary tracts. When we examine patterns in human biomarkers to discern human health state or diagnose specific diseases, it is...

  9. Morphological analysis of the cellular interactions between the eugregarine Gregarina garnhami (Apicomplexa) and the epithelium of its host, the desert locust Schistocerca gregaria

    Czech Academy of Sciences Publication Activity Database

    Valigurová, A.; Koudela, Břetislav

    2008-01-01

    Roč. 44, č. 3 (2008), s. 197-207 ISSN 0932-4739 R&D Projects: GA ČR GD524/03/H133 Institutional research plan: CEZ:AV0Z60220518 Keywords : Gragarina garnhami * Schistocerca gregaria * epimerite * detachment of trophozoite * cellular interactions Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 1.000, year: 2008

  10. Estimating cellular network performance during hurricanes

    International Nuclear Information System (INIS)

    Booker, Graham; Torres, Jacob; Guikema, Seth; Sprintson, Alex; Brumbelow, Kelly

    2010-01-01

    Cellular networks serve a critical role during and immediately after a hurricane, allowing citizens to contact emergency services when land-line communication is lost and serving as a backup communication channel for emergency responders. However, due to their ubiquitous deployment and limited design for extreme loading events, basic network elements, such as cellular towers and antennas are prone to failures during adverse weather conditions such as hurricanes. Accordingly, a systematic and computationally feasible approach is required for assessing and improving the reliability of cellular networks during hurricanes. In this paper we develop a new multi-disciplinary approach to efficiently and accurately assess cellular network reliability during hurricanes. We show how the performance of a cellular network during and immediately after future hurricanes can be estimated based on a combination of hurricane wind field models, structural reliability analysis, Monte Carlo simulation, and cellular network models and simulation tools. We then demonstrate the use of this approach for assessing the improvement in system reliability that can be achieved with discrete topological changes in the system. Our results suggest that adding redundancy, particularly through a mesh topology or through the addition of an optical fiber ring around the perimeter of the system can be an effective way to significantly increase the reliability of some cellular systems during hurricanes.

  11. Oxygen, nitrogen and air broadening of HCN spectral lines at terahertz frequencies

    International Nuclear Information System (INIS)

    Yang Chun; Buldyreva, Jeanna; Gordon, Iouli E.; Rohart, Francois; Cuisset, Arnaud; Mouret, Gael; Bocquet, Robin; Hindle, Francis

    2008-01-01

    The room-temperature nitrogen- and oxygen-broadening coefficients of hydrogen cyanide spectral lines have been measured in the 0.5-3 THz (17-100 cm -1 ) frequency range (purely rotational transitions with 5≤J≤36) by a continuous-wave terahertz spectrometer based on a photomixing source. An improved version of the Robert and Bonamy semiclassical formalism has been used to calculate the oxygen-broadening coefficients and resulted in a good agreement with these measurements. The nitrogen and oxygen data are combined to provide the air-broadening coefficients as used by the HITRAN database. A significant difference is observed between the measured and tabulated values for transitions with high values of the rotational quantum number. A new polynomial representation is suggested for inclusion in HITRAN. A similar polynomial expression has been derived for the nitrogen broadening to aid the studies of Titan's atmosphere

  12. Oxygen, nitrogen and air broadening of HCN spectral lines at terahertz frequencies

    Energy Technology Data Exchange (ETDEWEB)

    Yang Chun [Laboratoire de Physico-Chimie de l' Atmosphere, UMR CNRS 8101, Universite du Littoral Cote d' Opale, 189A Av. Maurice Schumann, 59140 Dunkerque (France); Buldyreva, Jeanna [Institut UTINAM, UMR CNRS 6213, Universite de Franche-Comte, 16, Route de Gray, 25030 Besancon Cedex (France); Gordon, Iouli E. [Harvard-Smithsonian Center for Astrophysics, Atomic and Molecular Physics Division, 60 Garden Street, Cambridge, MA 02138-1516 (United States); Rohart, Francois [Laboratoire de Physique des Lasers, Atomes et Molecules, UMR CNRS 8523, Batiment P5-135, Universite de Lille 1, 59655 Villeneuve d' Ascq Cedex (France); Cuisset, Arnaud; Mouret, Gael; Bocquet, Robin [Laboratoire de Physico-Chimie de l' Atmosphere, UMR CNRS 8101, Universite du Littoral Cote d' Opale, 189A Av. Maurice Schumann, 59140 Dunkerque (France); Hindle, Francis [Laboratoire de Physico-Chimie de l' Atmosphere, UMR CNRS 8101, Universite du Littoral Cote d' Opale, 189A Av. Maurice Schumann, 59140 Dunkerque (France)], E-mail: francis.hindle@univ-littoral.fr

    2008-11-15

    The room-temperature nitrogen- and oxygen-broadening coefficients of hydrogen cyanide spectral lines have been measured in the 0.5-3 THz (17-100 cm{sup -1}) frequency range (purely rotational transitions with 5{<=}J{<=}36) by a continuous-wave terahertz spectrometer based on a photomixing source. An improved version of the Robert and Bonamy semiclassical formalism has been used to calculate the oxygen-broadening coefficients and resulted in a good agreement with these measurements. The nitrogen and oxygen data are combined to provide the air-broadening coefficients as used by the HITRAN database. A significant difference is observed between the measured and tabulated values for transitions with high values of the rotational quantum number. A new polynomial representation is suggested for inclusion in HITRAN. A similar polynomial expression has been derived for the nitrogen broadening to aid the studies of Titan's atmosphere.

  13. Disorder-induced resonance shifts and mode edge broadening in photonic crystal waveguides

    DEFF Research Database (Denmark)

    Mann, N.; Javadi, Alisa; Garcia-Fernandez, Pedro David

    2014-01-01

    We present theory and measurements for systematically disordered slow-light photonic crystal waveguides and find a pronounced disorder-induced blueshift and broadening of the photon density of states....

  14. Coincidence Doppler broadening study on hydrocarbons with pi and sigma valence electrons: positronium correction

    International Nuclear Information System (INIS)

    Djourelov, N.; Suzuki, T.; Yu, R.S.; Ito, Y.

    2005-01-01

    The coincidence Doppler broadening (CDB) technique was applied to study the electron momentum distribution in anthracene, diphenyl, naphthalene, and polystyrene. A method for separation of the positron and positronium (Ps) components from the Doppler-broadened annihilation line (DBAL) was developed further to be applicable to hydrocarbons with different π and σ valence electron distributions. This method allows extraction of the electron momentum distribution (EMD) from DBAL for samples when Ps formation occurs. The annihilation on π valence electrons was detected as broadening of the EMD compared to that obtained for a polymer sample only with σ valence electrons. The broadening appeared as a significant change in the shape of the CDB ratio of the corresponding positronium-corrected curves: a slight enhancement above the unity line in the low-momentum region and a drop in the momentum region, 10-20x10 -3 m o c

  15. Stark broadening of the Hα line of hydrogen at low densities: quantal and semiclassical results

    International Nuclear Information System (INIS)

    Stehle, C.; Feautrier, N.

    1984-01-01

    Stark profiles of the Hα lines of hydrogen are computed at low densities in the 'impact' theory. By a comparison with quantal results, it is shown that a simple semiclassical perturbational approach with appropriate cutoffs is sufficient to give accurate profiles in the line centre. Neglecting the natural broadening and the fine-structure effects, the authors prove that the electronic broadening is negligible and that the profile has a Lorentzian shape. An analytical expression of the half width is given. (author)

  16. Extensional-wave stopband broadening across the joint of pipes of different thickness.

    Science.gov (United States)

    Su, Yuanda; Tang, Xiaoming; Liu, Yukai; Xu, Song; Zhuang, Chunxi

    2015-11-01

    The stopband of pipe extensional waves is an interesting natural phenomenon. This study demonstrates an important extension of this phenomenon. That is, the stopband can be effectively broadened by transmitting the waves across the joint of pipes of different thickness. The theoretical and experimental results reveal the detailed process of stopband forming along the pipe and the band broadening across the pipe joint. The result can be utilized to provide a method for logging while drilling acoustic isolation design.

  17. Photon Sieve Bandwidth Broadening by Reduction of Chromatic Aberration Effects Using Second-Stage Diffractive Optics

    Science.gov (United States)

    2015-03-26

    to copyright protection in the United States. AFIT-ENP-MS-15-M-086 PHOTON SIEVE BANDWIDTH BROADENING BY REDUCTION OF CHROMATIC ABERRATION...RELEASE; DISTRIBUTION UNLIMITED. AFIT-ENP-MS-15-M-086 PHOTON SIEVE BANDWIDTH BROADENING BY REDUCTION OF CHROMATIC ABERRATION EFFECTS USING...A photon sieve is a lightweight diffractive optic which can be useful for space- based imaging applications. It is limited by chromatic

  18. Magnon Broadening Effect by Magnon-Phonon Interaction in Colossal Magnetoresistance Manganites

    OpenAIRE

    Furukawa, Nobuo

    1999-01-01

    In order to study the magnetic excitation behaviors in colossal magnetoresistance manganites, a magnon-phonon interacting system is investigated. Sudden broadening of magnon linewidth is obtained when a magnon branch crosses over an optical phonon branch. Onset of the broadening is approximately determined by the magnon density of states. Anomalous magnon damping at the brillouine zone boundary observed in low Curie temperature manganites is explained.

  19. An experimental investigation into power broadening of the Na-D lines in a flame

    International Nuclear Information System (INIS)

    Calcar, R.A. van.

    1980-01-01

    Investigations are described aimed at the verification of the existence of power broadening in fluorescence, as predicted by theory in the case of a broadband excitation source. Measurements were performed on a vapour of sodium (Na) atoms in a pre-mixed H 2 -O 2 -Ar flame under 1 atm pressure. The easily excited first resonance (or D) lines of Na were chosen for the observation of power broadening in fluorescence. (Auth.)

  20. Collisional broadening of depolarized spectral lines of hydrogen gases at low temperatures

    International Nuclear Information System (INIS)

    Hout, K.D. van den.

    1978-01-01

    Experimental results are presented for the collisional broadening and shift of H 2 , D 2 and HD rotational Raman and depolarized Rayleigh lines at various temperatures between 25 K and 300 K. These are then discussed within the context of current theoretical concepts. For a few temperatures the line broadening cross sections are also reported as a function of the ortho-para composition for H 2 and D 2 . (C.F.)

  1. A cryptosystem based on elementary cellular automata

    Science.gov (United States)

    Abdo, A. A.; Lian, Shiguo; Ismail, I. A.; Amin, M.; Diab, H.

    2013-01-01

    Based on elementary cellular automata, a new image encryption algorithm is proposed in this paper. In this algorithm, a special kind of periodic boundary cellular automata with unity attractors is used. From the viewpoint of security, the number of cellular automata attractor states are changed with respect to the encrypted image, and different key streams are used to encrypt different plain images. The cellular neural network with chaotic properties is used as the generator of a pseudo-random key stream. Theoretical analysis and experimental results have both confirmed that the proposed algorithm possesses high security level and good performances against differential and statistical attacks. The comparison with other existing schemes is given, which shows the superiority of the proposal scheme.

  2. Broadening the Study of Participation in the Life Sciences: How Critical Theoretical and Mixed-Methodological Approaches Can Enhance Efforts to Broaden Participation

    Science.gov (United States)

    Metcalf, Heather

    2016-01-01

    This research methods Essay details the usefulness of critical theoretical frameworks and critical mixed-methodological approaches for life sciences education research on broadening participation in the life sciences. First, I draw on multidisciplinary research to discuss critical theory and methodologies. Then, I demonstrate the benefits of these…

  3. Water absorption lines, 931-961 nm - Selected intensities, N2-collision-broadening coefficients, self-broadening coefficients, and pressure shifts in air

    Science.gov (United States)

    Giver, L. P.; Gentry, B.; Schwemmer, G.; Wilkerson, T. D.

    1982-01-01

    Intensities were measured for 97 lines of H2O vapor between 932 and 961 nm. The lines were selected for their potential usefulness for remote laser measurements of H2O vapor in the earth's atmosphere. The spectra were obtained with several different H2O vapor abundances and N2 broadening gas pressures; the spectral resolution was 0.046/cm FWHM. Measured H2O line intensities range from 7 x 10 to the -25th to 7 x 10 to the -22nd/cm per (molecules/sq cm). H2O self-broadening coefficients were measured for 13 of these strongest lines; the mean value was 0.5/cm per atm. N2-collision-broadening coefficients were measured for 73 lines, and the average was 0.11 cm per atm HWHM. Pressure shifts in air were determined for a sample of six lines between 948 and 950 nm; these lines shift to lower frequency by an amount comparable to 0.1 of the collision-broadened widths measured in air or N2. The measured intensities of many lines of 300-000 band are much larger than expected from prior computations, in some cases by over an order of magnitude. Coriolis interactions with the stronger 201-000 band appear to be the primary cause of the enhancement of these line intensities.

  4. Speed dependence of CH335Cl–O2 line-broadening parameters probed on rotational transitions: Measurements and semi-classical calculations

    International Nuclear Information System (INIS)

    Buldyreva, J.; Margulès, L.; Motiyenko, R.A.; Rohart, F.

    2013-01-01

    Relaxation parameters for K-components (K≤6) of six J→J+1 rotational transitions (J=6, 10, 17, 22, 31 and 33) of CH 3 35 Cl perturbed by O 2 are measured at room temperature with Voigt, speed-dependent Voigt and Galatry profiles in order to probe the speed-dependence effects. With respect to the previous study of CH 3 35 Cl–N 2 system [Guinet et al., J Quant Spectrosc Radiat Transfer 2012;113:1113], higher active-gas pressures are reached, providing better signal-to-noise ratios, and the exact expression of the Beer–Lambert law is introduced in the fitting procedure, leading, among other advantages, to much more realistic low-pressure results. The broadening parameters of the considered lines are also computed by a semi-classical method for various relative velocities of colliders and the powers characterizing the dependence of the collisional cross-sections on relative speeds are deduced as functions of the rotational numbers J and K. Additional calculations performed with the Maxwell–Boltzmann distribution of velocities show no significant difference with the earlier results [Buldyreva et al., Phys Chem Chem Phys 2011;13:20326] obtained within the mean thermal velocity approximation. Weighted sums of the presently measured Voigt-profile O 2 -broadening parameters and of the previously published N 2 -broadening ones are calculated to yield experimental air-broadening coefficients for spectroscopic databases. -- Highlights: • Analysis of the speed dependence of relaxation rates of CH 3 Cl lines. • Introduction of the Beer–Lambert law in analysis of line-shapes recorded by FM technique. • Comparison of Maxwell–Boltzmann averaging and mean thermal velocity calculations. • Estimation of air-induced broadening for CH 3 Cl rotational lines

  5. Nested cellular automata

    International Nuclear Information System (INIS)

    Quasthoff, U.

    1985-07-01

    Cellular automata by definition consist of a finite or infinite number of cells, say of unit length, with each cell having the same transition function. These cells are usually considered as the smallest elements and so the space filled with these cells becomes discrete. Nevertheless, large pictures created by such cellular automata look very fractal. So we try to replace each cell by a couple of smaller cells, which have the same transition functions as the large ones. There are automata where this replacement does not destroy the macroscopic structure. In these cases this nesting process can be iterated. The paper contains large classes of automata with the above properties. In the case of one dimensional automata with two states and next neighbour interaction and a nesting function of the same type a complete classification is given. (author)

  6. Structural analysis of site-directed mutants of cellular retinoic acid-binding protein II addresses the relationship between structural integrity and ligand binding

    International Nuclear Information System (INIS)

    Vaezeslami, Soheila; Jia, Xiaofei; Vasileiou, Chrysoula; Borhan, Babak; Geiger, James H.

    2008-01-01

    A water network stabilizes the structure of cellular retionic acid binding protein II. The structural integrity of cellular retinoic acid-binding protein II (CRABPII) has been investigated using the crystal structures of CRABPII mutants. The overall fold was well maintained by these CRABPII mutants, each of which carried multiple different mutations. A water-mediated network is found to be present across the large binding cavity, extending from Arg111 deep inside the cavity to the α2 helix at its entrance. This chain of interactions acts as a ‘pillar’ that maintains the integrity of the protein. The disruption of the water network upon loss of Arg111 leads to decreased structural integrity of the protein. A water-mediated network can be re-established by introducing the hydrophilic Glu121 inside the cavity, which results in a rigid protein with the α2 helix adopting an altered conformation compared with wild-type CRABPII

  7. Predictability in cellular automata.

    Science.gov (United States)

    Agapie, Alexandru; Andreica, Anca; Chira, Camelia; Giuclea, Marius

    2014-01-01

    Modelled as finite homogeneous Markov chains, probabilistic cellular automata with local transition probabilities in (0, 1) always posses a stationary distribution. This result alone is not very helpful when it comes to predicting the final configuration; one needs also a formula connecting the probabilities in the stationary distribution to some intrinsic feature of the lattice configuration. Previous results on the asynchronous cellular automata have showed that such feature really exists. It is the number of zero-one borders within the automaton's binary configuration. An exponential formula in the number of zero-one borders has been proved for the 1-D, 2-D and 3-D asynchronous automata with neighborhood three, five and seven, respectively. We perform computer experiments on a synchronous cellular automaton to check whether the empirical distribution obeys also that theoretical formula. The numerical results indicate a perfect fit for neighbourhood three and five, which opens the way for a rigorous proof of the formula in this new, synchronous case.

  8. Probabilistic cellular automata.

    Science.gov (United States)

    Agapie, Alexandru; Andreica, Anca; Giuclea, Marius

    2014-09-01

    Cellular automata are binary lattices used for modeling complex dynamical systems. The automaton evolves iteratively from one configuration to another, using some local transition rule based on the number of ones in the neighborhood of each cell. With respect to the number of cells allowed to change per iteration, we speak of either synchronous or asynchronous automata. If randomness is involved to some degree in the transition rule, we speak of probabilistic automata, otherwise they are called deterministic. With either type of cellular automaton we are dealing with, the main theoretical challenge stays the same: starting from an arbitrary initial configuration, predict (with highest accuracy) the end configuration. If the automaton is deterministic, the outcome simplifies to one of two configurations, all zeros or all ones. If the automaton is probabilistic, the whole process is modeled by a finite homogeneous Markov chain, and the outcome is the corresponding stationary distribution. Based on our previous results for the asynchronous case-connecting the probability of a configuration in the stationary distribution to its number of zero-one borders-the article offers both numerical and theoretical insight into the long-term behavior of synchronous cellular automata.

  9. Algorithm for cellular reprogramming.

    Science.gov (United States)

    Ronquist, Scott; Patterson, Geoff; Muir, Lindsey A; Lindsly, Stephen; Chen, Haiming; Brown, Markus; Wicha, Max S; Bloch, Anthony; Brockett, Roger; Rajapakse, Indika

    2017-11-07

    The day we understand the time evolution of subcellular events at a level of detail comparable to physical systems governed by Newton's laws of motion seems far away. Even so, quantitative approaches to cellular dynamics add to our understanding of cell biology. With data-guided frameworks we can develop better predictions about, and methods for, control over specific biological processes and system-wide cell behavior. Here we describe an approach for optimizing the use of transcription factors (TFs) in cellular reprogramming, based on a device commonly used in optimal control. We construct an approximate model for the natural evolution of a cell-cycle-synchronized population of human fibroblasts, based on data obtained by sampling the expression of 22,083 genes at several time points during the cell cycle. To arrive at a model of moderate complexity, we cluster gene expression based on division of the genome into topologically associating domains (TADs) and then model the dynamics of TAD expression levels. Based on this dynamical model and additional data, such as known TF binding sites and activity, we develop a methodology for identifying the top TF candidates for a specific cellular reprogramming task. Our data-guided methodology identifies a number of TFs previously validated for reprogramming and/or natural differentiation and predicts some potentially useful combinations of TFs. Our findings highlight the immense potential of dynamical models, mathematics, and data-guided methodologies for improving strategies for control over biological processes. Copyright © 2017 the Author(s). Published by PNAS.

  10. Additional band broadening of peptides in the first size-exclusion chromatographic dimension of an automated stop-flow two-dimensional high performance liquid chromatography.

    Science.gov (United States)

    Xu, Jucai; Sun-Waterhouse, Dongxiao; Qiu, Chaoying; Zhao, Mouming; Sun, Baoguo; Lin, Lianzhu; Su, Guowan

    2017-10-27

    The need to improve the peak capacity of liquid chromatography motivates the development of two-dimensional analysis systems. This paper presented a fully automated stop-flow two-dimensional liquid chromatography system with size exclusion chromatography followed by reversed phase liquid chromatography (SEC×RPLC) to efficiently separate peptides. The effects of different stop-flow operational parameters (stop-flow time, peak parking position, number of stop-flow periods and column temperature) on band broadening in the first dimension (1 st D) SEC column were quantitatively evaluated by using commercial small proteins and peptides. Results showed that the effects of peak parking position and the number of stop-flow periods on band broadening were relatively small. Unlike stop-flow analysis of large molecules with a long running time, additional band broadening was evidently observed for small molecule analytes due to the relatively high effective diffusion coefficient (D eff ). Therefore, shorter analysis time and lower 1 st D column temperature were suggested for analyzing small molecules. The stop-flow two-dimensional liquid chromatography (2D-LC) system was further tested on peanut peptides and an evidently improved resolution was observed for both stop-flow heart-cutting and comprehensive 2D-LC analysis (in spite of additional band broadening in SEC). The stop-flow SEC×RPLC, especially heart-cutting analysis with shorter analysis time and higher 1 st D resolution for selected fractions, offers a promising approach for efficient analysis of complex samples. Copyright © 2017 Elsevier B.V. All rights reserved.

  11. Analysis of the compressive behaviour of the three-dimensional printed porous titanium for dental implants using a modified cellular solid model.

    Science.gov (United States)

    Gagg, Graham; Ghassemieh, Elaheh; Wiria, Florencia E

    2013-09-01

    A set of cylindrical porous titanium test samples were produced using the three-dimensional printing and sintering method with samples sintered at 900 °C, 1000 °C, 1100 °C, 1200 °C or 1300 °C. Following compression testing, it was apparent that the stress-strain curves were similar in shape to the curves that represent cellular solids. This is despite a relative density twice as high as what is considered the threshold for defining a cellular solid. As final sintering temperature increased, the compressive behaviour developed from being elastic-brittle to elastic-plastic and while Young's modulus remained fairly constant in the region of 1.5 GPa, there was a corresponding increase in 0.2% proof stress of approximately 40-80 MPa. The cellular solid model consists of two equations that predict Young's modulus and yield or proof stress. By fitting to experimental data and consideration of porous morphology, appropriate changes to the geometry constants allow modification of the current models to predict with better accuracy the behaviour of porous materials with higher relative densities (lower porosity).

  12. Environment Aware Cellular Networks

    KAUST Repository

    Ghazzai, Hakim

    2015-02-01

    The unprecedented rise of mobile user demand over the years have led to an enormous growth of the energy consumption of wireless networks as well as the greenhouse gas emissions which are estimated currently to be around 70 million tons per year. This significant growth of energy consumption impels network companies to pay huge bills which represent around half of their operating expenditures. Therefore, many service providers, including mobile operators, are looking for new and modern green solutions to help reduce their expenses as well as the level of their CO2 emissions. Base stations are the most power greedy element in cellular networks: they drain around 80% of the total network energy consumption even during low traffic periods. Thus, there is a growing need to develop more energy-efficient techniques to enhance the green performance of future 4G/5G cellular networks. Due to the problem of traffic load fluctuations in cellular networks during different periods of the day and between different areas (shopping or business districts and residential areas), the base station sleeping strategy has been one of the main popular research topics in green communications. In this presentation, we present several practical green techniques that provide significant gains for mobile operators. Indeed, combined with the base station sleeping strategy, these techniques achieve not only a minimization of the fossil fuel consumption but also an enhancement of mobile operator profits. We start with an optimized cell planning method that considers varying spatial and temporal user densities. We then use the optimal transport theory in order to define the cell boundaries such that the network total transmit power is reduced. Afterwards, we exploit the features of the modern electrical grid, the smart grid, as a new tool of power management for cellular networks and we optimize the energy procurement from multiple energy retailers characterized by different prices and pollutant

  13. Pre-precipitation studies in an Al-Zn alloy by positron Doppler broadening measurements

    International Nuclear Information System (INIS)

    Panchanadeeswaran, S.; Plichta, M.R.; Byrne, J.G.

    1984-01-01

    Positron annihilation studies using measurements of Doppler broadening of annihilation γ-rays have been carried out in an Al-8.5 wt% Zn alloy. More than 90% of positron trapping is believed to occur at GP zones formed on quenching the supersaturated solid solution. The dissolution of GP zones above 373 K was revealed by drastic narrowing of the Doppler energy spectrum for samples aged above 373 K. The kinetics of formation of GP zones at ambient temperatures is drastically reduced when the alloy containing GP zones formed during quenching from supersaturated solid solution was reverted at 403 K and reaged at ambient temperature. It was also observed that, even after long reageing, the total number of GP zones formed is much lower than in a directly quenched alloy. The kinetics of formation of GP zones are also reduced by quenching from a single phase to an intermediate temperature where GP zones are not stable, followed by ageing at ambient temperature. Transmission electron micrographs revealed the presence of dislocation loops in alloys quenched from temperature above 773 K. The sensitivity of positrons to the presence of dislocation loops was analysed using the R parameter analysis. (author)

  14. The HERMES recoil photon-detector and nuclear p{sub t}-Broadening at HERMES

    Energy Technology Data Exchange (ETDEWEB)

    Haarlem, Y. van

    2007-09-15

    The first part of this work consists of hardware research and development done in order to construct and test a photon-detector as one of the three detectors of the HERMES recoil detector. The HERMES recoil detector consists of a target cell, a silicon-detector, a scintillating fiber tracker, and a photon-detector. All are inside a super-conducting magnet. The silicon detector uses energy deposition to determine the momentum of the particle because in its energy range the energy deposition is an unambiguous function of the momentum of the particle. The scintillating fiber tracker is located outside the beam-vacuum and is surrounded by the photon-detector. It consists of two barrels with layers of scintillating fibers. It detects particles by converting their energy deposition into light. It measures two space points of a charged particle and from the bending of the assigned track (in the magnetic field provided by the super-conducting magnet) a momentum measurement can be derived. The photon-detector is located between the scintillating fiber tracker and the magnet. It consists (from the inside out) of three layers of tungsten showering material followed by scintillating strips. The second part of this work is an analysis performed concerning the transverse momentum broadening of hadrons produced in deep-inelastic scattering on a nuclear target compared to a D target. (orig.)

  15. Broadening the trans-contextual model of motivation: A study with Spanish adolescents.

    Science.gov (United States)

    González-Cutre, D; Sicilia, Á; Beas-Jiménez, M; Hagger, M S

    2014-08-01

    The original trans-contextual model of motivation proposed that autonomy support from teachers develops students' autonomous motivation in physical education (PE), and that autonomous motivation is transferred from PE contexts to physical activity leisure-time contexts, and predicts attitudes, perceived behavioral control and subjective norms, and forming intentions to participate in future physical activity behavior. The purpose of this study was to test an extended trans-contextual model of motivation including autonomy support from peers and parents and basic psychological needs in a Spanish sample. School students (n = 400) aged between 12 and 18 years completed measures of perceived autonomy support from three sources, autonomous motivation and constructs from the theory of planned behavior at three different points in time and in two contexts, PE and leisure-time. A path analysis controlling for past physical activity behavior supported the main postulates of the model. Autonomous motivation in a PE context predicted autonomous motivation in a leisure-time physical activity context, perceived autonomy support from teachers predicted satisfaction of basic psychological needs in PE, and perceived autonomy support from peers and parents predicted need satisfaction in leisure-time. This study provides a cross-cultural replication of the trans-contextual model of motivation and broadens it to encompass basic psychological needs. © 2013 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

  16. Cosserat modeling of cellular solids

    NARCIS (Netherlands)

    Onck, P.R.

    Cellular solids inherit their macroscopic mechanical properties directly from the cellular microstructure. However, the characteristic material length scale is often not small compared to macroscopic dimensions, which limits the applicability of classical continuum-type constitutive models. Cosserat

  17. Evaluation of Structural Cellular Glass

    Science.gov (United States)

    Adams, M. A.; Zwissler, J. G.

    1984-01-01

    Preliminary design information presented. First report discusses state of structural-cellular-glass programs as of June 1979. Second report gives further details of program to develop improved cellular glasses and to characterize properties of glasses and commercially available materials.

  18. Cellular communication through light.

    Directory of Open Access Journals (Sweden)

    Daniel Fels

    Full Text Available Information transfer is a fundamental of life. A few studies have reported that cells use photons (from an endogenous source as information carriers. This study finds that cells can have an influence on other cells even when separated with a glass barrier, thereby disabling molecule diffusion through the cell-containing medium. As there is still very little known about the potential of photons for intercellular communication this study is designed to test for non-molecule-based triggering of two fundamental properties of life: cell division and energy uptake. The study was performed with a cellular organism, the ciliate Paramecium caudatum. Mutual exposure of cell populations occurred under conditions of darkness and separation with cuvettes (vials allowing photon but not molecule transfer. The cell populations were separated either with glass allowing photon transmission from 340 nm to longer waves, or quartz being transmittable from 150 nm, i.e. from UV-light to longer waves. Even through glass, the cells affected cell division and energy uptake in neighboring cell populations. Depending on the cuvette material and the number of cells involved, these effects were positive or negative. Also, while paired populations with lower growth rates grew uncorrelated, growth of the better growing populations was correlated. As there were significant differences when separating the populations with glass or quartz, it is suggested that the cell populations use two (or more frequencies for cellular information transfer, which influences at least energy uptake, cell division rate and growth correlation. Altogether the study strongly supports a cellular communication system, which is different from a molecule-receptor-based system and hints that photon-triggering is a fine tuning principle in cell chemistry.

  19. Engineering Cellular Metabolism

    DEFF Research Database (Denmark)

    Nielsen, Jens; Keasling, Jay

    2016-01-01

    Metabolic engineering is the science of rewiring the metabolism of cells to enhance production of native metabolites or to endow cells with the ability to produce new products. The potential applications of such efforts are wide ranging, including the generation of fuels, chemicals, foods, feeds...... of metabolic engineering and will discuss how new technologies can enable metabolic engineering to be scaled up to the industrial level, either by cutting off the lines of control for endogenous metabolism or by infiltrating the system with disruptive, heterologous pathways that overcome cellular regulation....

  20. Cellular mechanics and motility

    Science.gov (United States)

    Hénon, Sylvie; Sykes, Cécile

    2015-10-01

    The term motility defines the movement of a living organism. One widely known example is the motility of sperm cells, or the one of flagellar bacteria. The propulsive element of such organisms is a cilium(or flagellum) that beats. Although cells in our tissues do not have a flagellum in general, they are still able to move, as we will discover in this chapter. In fact, in both cases of movement, with or without a flagellum, cell motility is due to a dynamic re-arrangement of polymers inside the cell. Let us first have a closer look at the propulsion mechanism in the case of a flagellum or a cilium, which is the best known, but also the simplest, and which will help us to define the hydrodynamic general conditions of cell movement. A flagellum is sustained by cellular polymers arranged in semi-flexible bundles and flagellar beating generates cell displacement. These polymers or filaments are part of the cellular skeleton, or "cytoskeleton", which is, in this case, external to the cellular main body of the organism. In fact, bacteria move in a hydrodynamic regime in which viscosity dominates over inertia. The system is thus in a hydrodynamic regime of low Reynolds number (Box 5.1), which is nearly exclusively the case in all cell movements. Bacteria and their propulsion mode by flagella beating are our unicellular ancestors 3.5 billion years ago. Since then, we have evolved to form pluricellular organisms. However, to keep the ability of displacement, to heal our wounds for example, our cells lost their flagellum, since it was not optimal in a dense cell environment: cells are too close to each other to leave enough space for the flagella to accomplish propulsion. The cytoskeleton thus developed inside the cell body to ensure cell shape changes and movement, and also mechanical strength within a tissue. The cytoskeleton of our cells, like the polymers or filaments that sustain the flagellum, is also composed of semi-flexible filaments arranged in bundles, and also in

  1. Difference between Extra- and Intracellular T1 Values of Carboxylic Acids Affects the Quantitative Analysis of Cellular Kinetics by Hyperpolarized NMR

    DEFF Research Database (Denmark)

    Karlsson, Magnus; Jensen, Pernille Rose; Ardenkjær-Larsen, Jan Henrik

    2016-01-01

    on the quantification of intracellular metabolicactivity. It is expected that the significantly shorter T1valueof the carboxylic moieties inside cells is a result of macro-molecular crowding. An artificial cytosol has been preparedand applied to predict the T1of other carboxylic acids. Wedemonstrate the value......Incomplete knowledge of the longitudinal relaxationtime constant (T1) leads to incorrect assumptions in quantita-tive kinetic models of cellular systems, studied by hyper-polarized real-time NMR. Using an assay that measures theintracellular signal of small carboxylic acids in living cells...

  2. Resonance broadening of Hg lines as a density diagnostic in high intensity discharge lamps

    International Nuclear Information System (INIS)

    Lawler, J E

    2004-01-01

    The use of width measurements on resonance broadened lines of Hg as a density diagnostic in high intensity discharge (HID) lamps is reviewed and further developed in this paper. Optical depths of Hg I lines at 491.6 nm, 577.0 nm, and 1014 nm are computed as a function of temperature to confirm that these lines are optically thin in most HID lamps. The effect of quadratic and quartic radial temperature variation on the width of resonance broadened lines is computed for arc core temperatures from 4000 K to 7000 K. Such variations in temperature, and inverse variations in Hg density, are found to increase the line widths by less than 10% for 'side-on' emission measurements averaged over the arc radius. Theoretical profiles of resonance broadened spectral lines, both radially averaged and as a function of chord offset, are presented. Observations of resonance broadened lines in a metal-halide HID lamp are presented and analysed. It is concluded that the widths of resonance broadened lines provide a convenient and reliable diagnostic for the arc core Hg density but are generally not very sensitive to the radial temperature and Hg density gradient

  3. Digital nonlinearity compensation in high-capacity optical communication systems considering signal spectral broadening effect.

    Science.gov (United States)

    Xu, Tianhua; Karanov, Boris; Shevchenko, Nikita A; Lavery, Domaniç; Liga, Gabriele; Killey, Robert I; Bayvel, Polina

    2017-10-11

    Nyquist-spaced transmission and digital signal processing have proved effective in maximising the spectral efficiency and reach of optical communication systems. In these systems, Kerr nonlinearity determines the performance limits, and leads to spectral broadening of the signals propagating in the fibre. Although digital nonlinearity compensation was validated to be promising for mitigating Kerr nonlinearities, the impact of spectral broadening on nonlinearity compensation has never been quantified. In this paper, the performance of multi-channel digital back-propagation (MC-DBP) for compensating fibre nonlinearities in Nyquist-spaced optical communication systems is investigated, when the effect of signal spectral broadening is considered. It is found that accounting for the spectral broadening effect is crucial for achieving the best performance of DBP in both single-channel and multi-channel communication systems, independent of modulation formats used. For multi-channel systems, the degradation of DBP performance due to neglecting the spectral broadening effect in the compensation is more significant for outer channels. Our work also quantified the minimum bandwidths of optical receivers and signal processing devices to ensure the optimal compensation of deterministic nonlinear distortions.

  4. Analysis by numerical calculations of the depth and dynamics of the penetration of ordered cellular structure made by casting from AlSi10Mg eutectic alloy

    Directory of Open Access Journals (Sweden)

    M. Małysza

    2011-07-01

    Full Text Available Owing to high plastic deformability while maintaining stress values constant and relatively low, ordered cellular structures arecharacterised by excellent properties and the ability to dissipate the impact energy. Due to the low weight, structures of this type can beused, among others, for different parts of motor vehicles. For tests, a trapezoidal ordered cellular structure of 50.8 x 50.8 x 25.4 (mmoverall dimensions was selected. It was made as an investment casting from AlSi9Mg eutectic alloy by the method of Rapid Prototyping(RP. During FEM computations using an Abaqus programme, it was assumed that the material is isotropic and exhibits the features of anelastic – plastic body, introducing to calculations the, listed in a table, values of the stress-strain curve obtained in tensile tests performedon a MTS testing machine (10T. The computations used Johnson - Cook model, which is usually sufficiently accurate when modelling thephenomena of penetration of an element by an object of high initial velocity. The performed numerical calculations allowed identification

  5. Cellular proliferation in the urorectal septation complex of the human embryo at Carnegie stages 13-18: a nuclear area-based morphometric analysis.

    Science.gov (United States)

    Nebot-Cegarra, Josep; Fàbregas, Pere Jordi; Sánchez-Pérez, Inma

    2005-10-01

    In order to analyse the patterns of cellular proliferation both in the mesenchyme of the urorectal septum (URS) and in the adjacent territories (posterior urogenital mesenchyme, anterior intestinal mesenchyme and cloacal folds mesenchyme), as well as their contribution to the process of cloacal division, a computer-assisted method was used to obtain the nuclear area of 3874 mesenchymal cells from camera lucida drawings of nuclear contours of selected sections of human embryos [Carnegie stages (CSs) 13-18]. Based on changes in the size of the nucleus during the cellular cycle, we considered proliferating cells in each territory to be those with a nuclear area over the 75th percentile. The URS showed increasing cell proliferation, with proliferation patterns that coincided closely with cloacal folds mesenchyme, and with less overall proliferation than urogenital and intestinal mesenchymes. Furthermore, at CS 18, we observed the beginning of the rupture in the cloacal membrane; however, no fusion has been demonstrated either between the URS and the cloacal membrane or between the cloacal folds. The results suggest that cloacal division depends on a morphogenetic complex where the URS adjacent territories could determine septal displacement at the time that their mesenchymes could be partially incorporated within the proliferating URS.

  6. The effect of line-broadening on the overall width of transition arrays in dense plasmas

    International Nuclear Information System (INIS)

    Hoarty, D.J.; Bentley, C.D.; Crowley, B.J.B.; Davidson, S.J.; Gales, S.G.; Graham, P.; Harris, J.W.O.; Iglesias, C.A.; James, S.F.; Smith, C.C.

    2006-01-01

    Experiments have been performed, using the HELEN laser, to measure absorption spectra in the temperature range 20-60 eV and density range 0.5-3 g/cm 3 . K-shell spectra of aluminium were studied to investigate the effect of the plasma environment on the absorption spectrum. The experiments show the effect, at high-density, of array broadening and the merging of high series lines. Comparisons of the experimental absorption data to different opacity models are discussed. The experimental data are compared to calculations of the CASSANDRA opacity model, with and without the inclusion of electron impact broadening. The CASSANDRA code is in better agreement with experiment with electron impact broadening included. The data were also compared to the OPAL detailed term accounting model with reasonable agreement

  7. Curriculum of broaden education and theory of teaching activity in school Physical Education

    Directory of Open Access Journals (Sweden)

    Sirléia Silvano

    2016-05-01

    Full Text Available This paper focuses on the conception of curriculum with broaden character in Physical Education and Davidov and Leontiev’s learning theory as possibility of focusing on human education in the omnilateral perspective. We endorse the necessity that the curriculum dynamics – dealing with knowledge, school systematization and standardization of school practices – becomes effective in a curriculum of broaden character. We consider that dealing with knowledge involves the necessity to create conditions that promote the transmission and assimilation of school knowledge. We refer therefore to a scientific direction of the teaching process, in other words, that the teacher leads the student to enter into study activity; from abstract knowledge rising to concrete theoretical knowledge, which is brought about by curriculum organization from a broaden conception.

  8. Line-Broadening in Low-Temperature Solid-State NMR Spectra of Fibrils

    Energy Technology Data Exchange (ETDEWEB)

    Bauer, Thomas; Dotta, Claudio; Balacescu, Livia; Gath, Julia; Hunkeler, Andreas [ETH Zurich, Physical Chemistry (Switzerland); Böckmann, Anja, E-mail: a.bockmann@ibcp.fr [Université de Lyon 1, Institut de Biologie et Chimie des Protéines, UMR 5086 CNRS (France); Meier, Beat H., E-mail: beme@ethz.ch [ETH Zurich, Physical Chemistry (Switzerland)

    2017-01-15

    The temperature-dependent resonance-line broadening of HET-s(218–289) in its amyloid form is investigated in the range between 110 K and 280 K. Significant differences are observed between residues in the structured hydrophobic triangular core, which are broadened the least and can be detected down to 100 K, and in the solvent-exposed parts, which are broadened the most and often disappear from the observed spectrum around 200 K. Below the freezing of the bulk water, around 273 K, the protein fibrils are still surrounded by a layer of mobile water whose thickness decreases with temperature, leading to drying out of the fibrils.

  9. Line broadening interference for high-resolution nuclear magnetic resonance spectra under inhomogeneous magnetic fields

    International Nuclear Information System (INIS)

    Wei, Zhiliang; Yang, Jian; Lin, Yanqin; Chen, Zhong; Chen, Youhe

    2015-01-01

    Nuclear magnetic resonance spectroscopy serves as an important tool for analyzing chemicals and biological metabolites. However, its performance is subject to the magnetic-field homogeneity. Under inhomogeneous fields, peaks are broadened to overlap each other, introducing difficulties for assignments. Here, we propose a method termed as line broadening interference (LBI) to provide high-resolution information under inhomogeneous magnetic fields by employing certain gradients in the indirect dimension to interfere the magnetic-field inhomogeneity. The conventional spectral-line broadening is thus interfered to be non-diagonal, avoiding the overlapping among adjacent resonances. Furthermore, an inhomogeneity correction algorithm is developed based on pattern recognition to recover the high-resolution information from LBI spectra. Theoretical deductions are performed to offer systematic and detailed analyses on the proposed method. Moreover, experiments are conducted to prove the feasibility of the proposed method for yielding high-resolution spectra in inhomogeneous magnetic fields

  10. Modeling and cellular studies

    International Nuclear Information System (INIS)

    Anon.

    1982-01-01

    Testing the applicability of mathematical models with carefully designed experiments is a powerful tool in the investigations of the effects of ionizing radiation on cells. The modeling and cellular studies complement each other, for modeling provides guidance for designing critical experiments which must provide definitive results, while the experiments themselves provide new input to the model. Based on previous experimental results the model for the accumulation of damage in Chlamydomonas reinhardi has been extended to include various multiple two-event combinations. Split dose survival experiments have shown that models tested to date predict most but not all the observed behavior. Stationary-phase mammalian cells, required for tests of other aspects of the model, have been shown to be at different points in the cell cycle depending on how they were forced to stop proliferating. These cultures also demonstrate different capacities for repair of sublethal radiation damage

  11. The density broadening in a sodium F=2 condensate detected by a pulse train

    Directory of Open Access Journals (Sweden)

    Jianing Han

    2011-09-01

    Full Text Available The dipole-blockaded sodium clock transition has been detected by high resolution microwave spectroscopy, the multiple-pulse spectroscopy. This spectroscopic technique has been first used to detect the density broadening and shifting in a Sodium Bose Einstein Condensate (BEC by probing the sodium clock-transition. Moreover, by narrowing the pulse-width of the pulses, some of the broadening mechanisms can be partially reduced. The results reported here are essential steps toward the ground-state quantum computing, few-body spectroscopy, spin squeezing and quantum metrology.

  12. Low pressure broadening and shift of the 540.06 nm line of neon

    International Nuclear Information System (INIS)

    Bielski, A.; Dokurno, W.; Szudy, J.; Wolnikowski, J.

    1980-01-01

    The collision broadening and shift of the 540.06 nm line of neon emitted from a low pressure glow discharge in pure neon and a neon-helium mixture have been measured. The values of the broadening and shift coefficients were determined and compared with the results of calculations based on the Lindholm-Foley impact theory assuming a Lennard-Jones potential. The results for pure neon demonstrate the inadequacy of the Lennard-Jones potential for the Ne-Ne interaction. (orig.)

  13. Effect of the potential well on low temperature pressure broadening in CO-He

    Science.gov (United States)

    Palma, A.; Green, S.

    1986-01-01

    Previously reported low-temperature pressure-broadening calculations (Green, 1985) for CO-He interacting via an SCF-CI potential are compared with new calculations in which the attractive part of the potential is either reduced by half or eliminated entirely. Results demonstrate that the attractive well is responsible for low-temperature enhancement of pressure-broadening cross sections and suggest that agreement with recent experimental values at 4 K (Messer and DeLucia, 1984) can be obtained by a modest reduction, probably within the expected uncertainty, in the attractive part of the SCF-CI potential.

  14. Saturation broadening effect in an InP photonic-crystal nanocavity switch

    DEFF Research Database (Denmark)

    Yu, Yi; Palushani, Evarist; Heuck, Mikkel

    2014-01-01

    Pump-probe measurements on InP photonic-crystal nanocavities show large-contrast fast switching at low pulse energy. For large pulse energies, large resonance shifts passing across the probe lead to switching contrast saturation and switching time-window broadening. © 2014 OSA.......Pump-probe measurements on InP photonic-crystal nanocavities show large-contrast fast switching at low pulse energy. For large pulse energies, large resonance shifts passing across the probe lead to switching contrast saturation and switching time-window broadening. © 2014 OSA....

  15. Broadening of ICRH produced fast ion profiles due to orbit effects

    International Nuclear Information System (INIS)

    Eriksson, L.-G.; Porcelli, F.

    1991-01-01

    In the JET tokamak, minority ions accelerated by ICRH reach energies in the MeV range. Near the plasma magnetic axis, the standard trapped particle ''banana'' orbit is distorted into a ''potato'' or ''fat banana'' orbit. The zero banana width approximation which is used in most Fokker-Planck calculations of velocity distributions of resonating ions is often not valid in JET. The inclusion of finite banana width effects will, in general, lead to a lowering of the averaged tail energy and a broadening of pressure profiles, power transfer profiles etc. A model for calculating orbit broadened profiles is presented. (Author)

  16. Acousto-optics bandwidth broadening in a Bragg cell based on arbitrary synthesized signal methods.

    Science.gov (United States)

    Peled, Itay; Kaminsky, Ron; Kotler, Zvi

    2015-06-01

    In this work, we present the advantages of driving a multichannel acousto-optical deflector (AOD) with a digitally synthesized multifrequency RF signal. We demonstrate a significant bandwidth broadening of ∼40% by providing well-tuned phase control of the array transducers. Moreover, using a multifrequency, complex signal, we manage to suppress the harmonic deflections and return most of the spurious energy to the main beam. This method allows us to operate the AOD with more than an octave of bandwidth with negligible spurious energy going to the harmonic beams and a total bandwidth broadening of over 70%.

  17. Stochastic theory of relaxation and collisional broadening of spectral line shapes

    International Nuclear Information System (INIS)

    Faid, K.

    1986-01-01

    A complete stochastic theory of relaxation is developed in terms of a homogeneous equation for the averaged density matrix of a system immersed in a thermal bath. This theory is then used as the basis of a new stochastic approach to the phenomenon of collisional broadening of spectral line shapes. Single-photon and multiphoton processes are studied. The features of a line shape are linked by simple expressions to the statistical properties of a stochastic hermitian Hamiltonian. The ordinary line shape predicted by Kubo's approach is generalized. The present approach predicts broadening as well as asymmetry and shift. A representation of line shapes in multiphoton processes by diagrams is also developed

  18. Narrowing of electromagnetically induced transparency resonance in a Doppler-broadened medium

    International Nuclear Information System (INIS)

    Javan, Ali; Kocharovskaya, Olga; Lee Hwang; Scully, Marlan O.

    2002-01-01

    We derive an analytic expression for the linewidth of electromagnetically induced transparency (EIT) resonance in a Doppler-broadened system. It is shown here that for relatively low intensity of the driving field the EIT linewidth is proportional to the square root of intensity and is independent of the Doppler width, similar to the laser-induced line narrowing effect described by Feld and Javan. In the limit of high intensity we recover the usual power-broadening case where the EIT linewidth is proportional to the intensity and inversely proportional to the Doppler width

  19. Retroperitoneal Cellular Angiofibroma: A Rare Gynecological Entity

    Directory of Open Access Journals (Sweden)

    Ana Brandão

    2017-12-01

    Full Text Available Cellular angiofibroma is a mesenchymal tumor, described in 1997, without gender preference, that usually appears at age 40. The vulvovaginal area is the most common site in women, mimicking vulvar benign tumors, like Bartholin gland cyst. However, there are a few described cases of a deep or extra-pelvic angiofibroma. Excision is the treatment of choice and the recurrence rate appears to be low. We present the case of a woman with a heterogeneous tumor in the right adnexial region. At the surgery, a retroperitoneal tumor was excised and the histopathological tissue analysis revealed a cellular angiofibroma.

  20. Structural analysis and mutant growth properties reveal distinctive enzymatic and cellular roles for the three major L-alanine transaminases of Escherichia coli.

    Science.gov (United States)

    Peña-Soler, Esther; Fernandez, Francisco J; López-Estepa, Miguel; Garces, Fernando; Richardson, Andrew J; Quintana, Juan F; Rudd, Kenneth E; Coll, Miquel; Vega, M Cristina

    2014-01-01

    In order to maintain proper cellular function, the metabolism of the bacterial microbiota presents several mechanisms oriented to keep a correctly balanced amino acid pool. Central components of these mechanisms are enzymes with alanine transaminase activity, pyridoxal 5'-phosphate-dependent enzymes that interconvert alanine and pyruvate, thereby allowing the precise control of alanine and glutamate concentrations, two of the most abundant amino acids in the cellular amino acid pool. Here we report the 2.11-Å crystal structure of full-length AlaA from the model organism Escherichia coli, a major bacterial alanine aminotransferase, and compare its overall structure and active site composition with detailed atomic models of two other bacterial enzymes capable of catalyzing this reaction in vivo, AlaC and valine-pyruvate aminotransferase (AvtA). Apart from a narrow entry channel to the active site, a feature of this new crystal structure is the role of an active site loop that closes in upon binding of substrate-mimicking molecules, and which has only been previously reported in a plant enzyme. Comparison of the available structures indicates that beyond superficial differences, alanine aminotransferases of diverse phylogenetic origins share a universal reaction mechanism that depends on an array of highly conserved amino acid residues and is similarly regulated by various unrelated motifs. Despite this unifying mechanism and regulation, growth competition experiments demonstrate that AlaA, AlaC and AvtA are not freely exchangeable in vivo, suggesting that their functional repertoire is not completely redundant thus providing an explanation for their independent evolutionary conservation.

  1. Osteochondral Biopsy Analysis Demonstrates That BST-CarGel Treatment Improves Structural and Cellular Characteristics of Cartilage Repair Tissue Compared With Microfracture

    Science.gov (United States)

    Méthot, Stéphane; Changoor, Adele; Tran-Khanh, Nicolas; Hoemann, Caroline D.; Stanish, William D.; Restrepo, Alberto; Shive, Matthew S.; Buschmann, Michael D.

    2016-01-01

    Objective The efficacy and safety of BST-CarGel, a chitosan-based medical device for cartilage repair, was compared with microfracture alone at 1 year during a multicenter randomized controlled trial (RCT) in the knee. The quality of repair tissue of osteochondral biopsies collected from a subset of patients was compared using blinded histological assessments. Methods The international RCT evaluated repair tissue quantity and quality by 3-dimensional quantitative magnetic resonance imaging as co-primary endpoints at 12 months. At an average of 13 months posttreatment, 21/41 BST-CarGel and 17/39 microfracture patients underwent elective second look arthroscopies as a tertiary endpoint, during which ICRS (International Cartilage Repair Society) macroscopic scoring was carried out, and osteochondral biopsies were collected. Stained histological sections were evaluated by blinded readers using ICRS I and II histological scoring systems. Collagen organization was evaluated using a polarized light microscopy score. Results BST-CarGel treatment resulted in significantly better ICRS macroscopic scores (P = 0.0002) compared with microfracture alone, indicating better filling, integration, and tissue appearance. Histologically, BST-CarGel resulted in a significant improvement of structural parameters—Surface Architecture (P = 0.007) and Surface/Superficial Assessment (P = 0.042)—as well as cellular parameters—Cell Viability (P = 0.006) and Cell Distribution (P = 0.032). No histological parameters were significantly better for the microfracture group. BST-CarGel treatment also resulted in a more organized repair tissue with collagen stratification more similar to native hyaline cartilage, as measured by polarized light microscopy scoring (P = 0.0003). Conclusion Multiple and independent analyses in this biopsy substudy demonstrated that BST-CarGel treatment results in improved structural and cellular characteristics of repair tissue at 1 year posttreatment compared with

  2. Broadening of Distribution of Trap States in PbS Quantum Dot Field-Effect Transistors with High-k Dielectrics.

    Science.gov (United States)

    Nugraha, Mohamad I; Häusermann, Roger; Watanabe, Shun; Matsui, Hiroyuki; Sytnyk, Mykhailo; Heiss, Wolfgang; Takeya, Jun; Loi, Maria A

    2017-02-08

    We perform a quantitative analysis of the trap density of states (trap DOS) in PbS quantum dot field-effect transistors (QD-FETs), which utilize several polymer gate insulators with a wide range of dielectric constants. With increasing gate dielectric constant, we observe increasing trap DOS close to the lowest unoccupied molecular orbital (LUMO) of the QDs. In addition, this increase is also consistently followed by broadening of the trap DOS. We rationalize that the increase and broadening of the spectral trap distribution originate from dipolar disorder as well as polaronic interactions, which are appearing at strong dielectric polarization. Interestingly, the increased polaron-induced traps do not show any negative effect on the charge carrier mobility in our QD devices at the highest applied gate voltage, giving the possibility to fabricate efficient low-voltage QD devices without suppressing carrier transport.

  3. Using the van der Waals broadening of spectral atomic lines to measure the gas temperature of an argon-helium microwave plasma at atmospheric pressure

    International Nuclear Information System (INIS)

    Munoz, J.; Dimitrijevic, M.S.; Yubero, C.; Calzada, M.D.

    2009-01-01

    The applications of plasmas generated with gas mixtures have become increasingly common in different scientific and technological fields. In order to understand the advantages of these discharges, for instance in chemical analysis, it is necessary to know the gas temperature (T g , kinetic energy of the heavy particles) since it has a great influence on the atomization reactions of the molecules located in the discharge, along with the dependence of the reaction rate on this parameter. The ro-vibrational emission spectra of the molecular species are usually used to measure the gas temperature of a discharge at atmospheric pressure although under some experimental conditions, these are difficult to detect. In such cases, the gas temperature can be determined from the van der Waals broadening of the emitted atomic spectral lines related to this parameter. The method proposed is based on the van der Waals broadening taking into account two perturbers

  4. CH3D photomixing spectroscopy up to 2.5 THz: New set of rotational and dipole parameters, first THz self-broadening measurements

    Science.gov (United States)

    Bray, Cédric; Cuisset, Arnaud; Hindle, Francis; Bocquet, Robin; Mouret, Gaël; Drouin, Brian J.

    2017-03-01

    Several previously unmeasured transitions of 12CH3D have been recorded by a terahertz photomixing continuous-wave spectrometer up to QR(10) branch at 2.5 THz. An improved set of rotational constants has been obtained utilizing a THz frequency metrology based on a frequency comb that achieved an averaged frequency position better than 150 kHz on more than fifty ground-state transitions. A detailed analysis of the measured line intensities was undertaken using the multispectrum fitting program and has resulted in a determination of new dipole moment parameters. Measurements at different pressures of the QR(7) transitions provide the first determination of self-broadening coefficients from pure rotational CH3D lines. The THz rotational measurements are consistent with IR rovibrational data but no significant vibrational dependence of self-broadening coefficient may be observed by comparison.

  5. H{sub {beta}} Stark broadening in cold plasmas with low electron densities calibrated with Thomson scattering

    Energy Technology Data Exchange (ETDEWEB)

    Palomares, J.M., E-mail: j.m.palomares-linares@tue.nl [Department of Applied Physics, Eindhoven University of Technology, P.O. Box 513, 5600 MB Eindhoven (Netherlands); Huebner, S.; Carbone, E.A.D.; Vries, N. de; Veldhuizen, E.M. de [Department of Applied Physics, Eindhoven University of Technology, P.O. Box 513, 5600 MB Eindhoven (Netherlands); Sola, A.; Gamero, A. [Departamento de Fisica, Universidad de Cordoba, Campus de Rabanales, ed. C-2, 14071 Cordoba (Spain); Mullen, J.J.A.M. van der [Department of Applied Physics, Eindhoven University of Technology, P.O. Box 513, 5600 MB Eindhoven (Netherlands)

    2012-07-15

    In the present work Stark broadening measurements have been carried out on low electron density (n{sub e} < 5{center_dot}10{sup 19} m{sup -3}) and (relatively) low gas temperature (T{sub g} < 1100 K) argon-hydrogen plasma, under low-intermediate pressure conditions (3 mbar-40 mbar). A line fitting procedure is used to separate the effects of the different broadening mechanisms (e.g. Doppler and instrumental broadening) from the Stark broadening. A Stark broadening theory is extrapolated to lower electron density values, below its theoretical validity regime. Thomson scattering measurements are used to calibrate and validate the procedure. The results show an agreement within 20%, what validates the use of this Stark broadening method under such low density conditions. It is also found that Stark broadened profiles cannot be assumed to be purely Lorentzian. Such an assumption would lead to an underestimation of the electron density. This implies that independent information on the gas temperature is needed to find the correct values of n{sub e}. - Highlights: Black-Right-Pointing-Pointer Stark broadening measurements at low density and temperature conditions Black-Right-Pointing-Pointer Calibration with Thomson scattering Black-Right-Pointing-Pointer Indications of the non-Lorentzian shape of the Stark broadening Black-Right-Pointing-Pointer Impossibility of simultaneous diagnostic of gas temperature and electron density.

  6. An International Coastline Collaboratory to Broaden Scientific Impacts of a Subduction Zone Observatory

    Science.gov (United States)

    Bodin, P.

    2015-12-01

    A global Subduction Zone Observatory (SZO) presents an exciting opportunity to broaden involvement in scientific research and to ensure multidisciplinary impact. Most subduction zones feature dynamic interactions of the seafloor, the coastline, and the onshore environments also being perturbed by global climate change. Tectonic deformation, physical environment changes (temperature and chemistry), and resulting ecological shifts (intertidal population redistribution, etc.) are all basic observables for important scientific investigation. Yet even simple baseline studies like repeated transects of intertidal biological communities are rare. A coordinated program of such studies would document the local variability across time and spatial scales, permit comparisons with other subducting coastlines, and extend the reach and importance of other SZO studies. One goal is to document the patterns, and separate the component causes of, coastal uplift and subsidence and ecological response to a subduction zone earthquake using a database of pre-event biological and surveying observations. Observations would be directed by local scientists using students and trained volunteers as observers, under the auspices of local educational entities and using standardized sampling and reporting methods. The observations would be added to the global, Internet-accessible, database for use by the entire scientific community. Data acquisition and analysis supports the educational missions of local schools and universities, forming the basis for educational programs. All local programs would be coordinated by an international panel convened by the SZO. The facility would include a web-hosted lecture series and an annual web conference to aid organization and collaboration. Small grants could support more needy areas. This SZO collaboratory advances not only scientific literacy, but also multinational collaboration and scholarship, and (most importantly) produces important scientific results.

  7. Broadening our approaches to studying dispersal in raptors

    Science.gov (United States)

    Morrison, J.L.; Wood, P.B.

    2009-01-01

    Dispersal is a behavioral process having consequences for individual fitness and population dynamics. Recent advances in technology have spawned new theoretical examinations and empirical studies of the dispersal process in birds, providing opportunities for examining how this information may be applied to studies of the dispersal process in raptors. Many raptors are the focus of conservation efforts; thus, reliable data on all aspects of a species' population dynamics, including dispersal distances, movement rates, and mortality rates of dispersers, are required for population viability analyses that are increasingly used to inform management. Here, we address emerging issues and novel approaches used in the study of avian dispersal, and provide suggestions to consider when developing and implementing studies of dispersal in raptors. Clarifying study objectives is essential for selection of an appropriate methodology and sample size needed to obtain accurate estimates of movement distances and rates. Identifying an appropriate study-area size will allow investigators to avoid underestimating population connectivity and important population parameters. Because nomadic individuals of some species use temporary settling areas or home ranges before breeding, identification of these areas is critical for conservation efforts focusing on habitats other than breeding sites. Study designs for investigating raptor dispersal also should include analysis of environmental and social factors influencing dispersal, to improve our understanding of condition-dependent dispersal strategies. Finally, we propose a terminology for use in describing the variety of movements associated with dispersal behavior in raptors, and we suggest this terminology could be used consistently to facilitate comparisons among studies. ?? 2009 The Raptor Research Foundation, Inc.

  8. Investigation of mechanisms for He-I emission radial profile broadening in a weakly ionized cylindrical helium plasma with recombining edge

    Energy Technology Data Exchange (ETDEWEB)

    Hollmann, E. M.; Brandt, C.; Hudson, B.; Nishijima, D.; Pigarov, A. Yu. [University of California–San Diego, 9500 Gilman Dr., La Jolla, California 92093-0417 (United States); Kumar, D. [Johns Hopkins University, 3400 N Charles St., Baltimore, Maryland 21218 (United States)

    2013-09-15

    Spatially resolved spectroscopic measurements of He-I line emission are used to study the causes of emission profile broadening radially across the cylinder of a weakly ionized helium plasma. The plasma consists of an ionizing core (r < 2 cm) surrounded by a recombining edge (r > 2 cm) plasma. The brightness profiles of low-n EUV He-I resonance lines are shown to be strongly radially broadened due to opacity. The brightness profiles of high-n visible lines are also found to be strongly radially broadened, but dominantly due to edge recombination. Visible low-n lines are less strongly radially broadened, apparently by a combination of both recombination and EUV opacity. The low-n visible He-I line ratio method with central opacity correction is found to calculate central electron density and temperature well, with poor agreement at the edge, as expected for recombining plasma. In the recombining edge, high-n Boltzmann analysis is found to accurately measure the cold (T{sub e} < 0.2 eV) edge temperature. Near the core, however, high-n Boltzmann analysis can be complicated by electron-impact excitation, giving incorrect (T{sub e}≈ 0.1 eV) apparent temperatures. Probe measurements were not able to capture the cold edge temperature accurately, probably due to large potential fluctuations, even when using fast triple probe measurements. Fast spectroscopic measurements show that this discrepancy is not explained by recombining plasma alternating with ionizing plasma in the edge region.

  9. Design, synthesis and cellular metabolism study of 4'-selenonucleosides.

    Science.gov (United States)

    Yu, Jinha; Sahu, Pramod K; Kim, Gyudong; Qu, Shuhao; Choi, Yoojin; Song, Jayoung; Lee, Sang Kook; Noh, Minsoo; Park, Sunghyouk; Jeong, Lak Shin

    2015-01-01

    4'-seleno-homonucleosides were synthesized as next-generation nucleosides, and their cellular phosphorylation was studied to confirm the hypothesis that bulky selenium atom can sterically hinder the approach of cellular nucleoside kinase to the 5'-OH for phosphorylation. 4'-seleno-homonucleosides (n = 2), with one-carbon homologation, were synthesized through a tandem seleno-Michael addition-SN2 ring cyclization. LC-MS analysis demonstrated that they were phosphorylated by cellular nucleoside kinases, resulting in anticancer activity. The bulky selenium atom played a key role in deciding the phosphorylation by cellular nucleoside kinases. [Formula: see text].

  10. Broadening of Plasmonic Resonance Due to Electron Collisions with Nanoparticle Boundary: а Quantum Mechanical Consideration

    DEFF Research Database (Denmark)

    Uskov, Alexander; Protsenko, Igor E.; Mortensen, N. Asger

    2014-01-01

    We present a quantum mechanical approach to calculate broadening of plasmonic resonances in metallic nanostructures due to collisions of electrons with the surface of the structure. The approach is applicable if the characteristic size of the structure is much larger than the de Broglie electron...

  11. Broaden Engineering Technology students' knowledge through hands-on with motion robotics

    Science.gov (United States)

    The skills and knowledge that employers value most are not always well-aligned with undergraduate engineering technology programs. With the support of a federal grant, we identify and propose to broaden the undergraduate student experience to include training in transferable skills with agricultura...

  12. Calculation of the density shift and broadening of the transition lines in pionic helium: Computational problems

    Energy Technology Data Exchange (ETDEWEB)

    Bakalov, Dimitar, E-mail: dbakalov@inrne.bas.bg [Bulgarian Academy of Sciences, INRNE (Bulgaria)

    2015-08-15

    The potential energy surface and the computational codes, developed for the evaluation of the density shift and broadening of the spectral lines of laser-induced transitions from metastable states of antiprotonic helium, fail to produce convergent results in the case of pionic helium. We briefly analyze the encountered computational problems and outline possible solutions of the problems.

  13. Determination of the Ion Velocity Distribution in a Rotating Plasma from Measurements of Doppler Broadening

    DEFF Research Database (Denmark)

    Jørgensen, L. W.; Sillesen, Alfred Hegaard

    1979-01-01

    The Doppler-broadened profile of the He II 4685.75 AA line was measured along a chord in a rotating plasma, transverse to the magnetic field. Using a single-particle orbit picture, the corresponding velocity spectrum of ions confirm the measurements, so it can be concluded that the single-particl...

  14. Doppler broadened positron annihilation studies in YBa2Cu3Osub(7-x)

    International Nuclear Information System (INIS)

    Pujari, P.K.; Manohar, S.B.; Datta, T.; Prakash, S.; Gopalakrishnan, I.K.; Sastry, P.V.P.S.S.; Phatak, G.M.; Iyer, R.M.

    1988-01-01

    DBAR (Doppler Broadened Positron Annihilation Radiation) has been measured as a function of temperature in a superconducting (orthorhombic) and a nonsuperconducting (tetragonal) YBCO compound. Each spectrum is deconvoluted off the instrumental resolution function and analysed using PAACFIT. An electronic structural change leading to higher momentum state of the oxygen valence electron and increase in electron density at the oxygen vacancy sites are suggested. (author)

  15. LBQ2D, Extending the Line Broadened Quasilinear Model to TAE-EP Interaction

    Science.gov (United States)

    Ghantous, Katy; Gorelenkov, Nikolai; Berk, Herbert

    2012-10-01

    The line broadened quasilinear model was proposed and tested on the one dimensional electrostatic case of the bump on tailfootnotetextH.L Berk, B. Breizman and J. Fitzpatrick, Nucl. Fusion, 35:1661, 1995 to study the wave particle interaction. In conventional quasilinear theory, the sea of overlapping modes evolve with time as the particle distribution function self consistently undergo diffusion in phase space. The line broadened quasilinear model is an extension to the conventional theory in a way that allows treatment of isolated modes as well as overlapping modes by broadening the resonant line in phase space. This makes it possible to treat the evolution of modes self consistently from onset to saturation in either case. We describe here the model denoted by LBQ2D which is an extension of the proposed one dimensional line broadened quasilinear model to the case of TAEs interacting with energetic particles in two dimensional phase space, energy as well as canonical angular momentum. We study the saturation of isolated modes in various regimes and present the analytical derivation and numerical results. Finally, we present, using ITER parameters, the case where multiple modes overlap and describe the techniques used for the numerical treatment.

  16. A scheme comparison of Autler-Townes based slow light in inhomogeneously broadened quantum dot media

    DEFF Research Database (Denmark)

    Hansen, Per Lunnemann; Mørk, Jesper

    2010-01-01

    We propose a method to achieve significant optical signal delays exploiting the effect of Autler–Townes splitting (ATS) in an inhomogeneously broadened quantum dot medium. The absorption and slowdown effects are compared for three schemes i.e., Ξ, V, and Λ, corresponding to different excitation c...

  17. Quasi-particle lifetime broadening in normal-superconductor junctions with UPt3

    NARCIS (Netherlands)

    deWilde, Y; Klapwijk, TM; Jansen, AGM; Heil, J; Wyder, P

    For the Andreev-reflection process of quasi-particles at a normal-metal-superconductor interface the influence of lifetime broadening of the quasi-particles on the current-voltage characteristics of NS point contacts is analyzed along the lines of the Blonder-Tinkham-Klapwijk model. The anomalous

  18. Creation of problem-dependent Doppler-broadened cross sections in the KENO Monte Carlo code

    International Nuclear Information System (INIS)

    Hart, Shane W.D.; Celik, Cihangir; Maldonado, G. Ivan; Leal, Luiz

    2016-01-01

    Highlights: • A quick method of Doppler broadening one- and two-dimensional cross sections has been added to KENO. • The method uses a finite difference method to broaden data to user defined temperatures. • Various problems and benchmarks were run to showcase results. • Results with the Doppler broadened cross sections are closer to benchmark results. - Abstract: This paper introduces a quick method for improving the accuracy of Monte Carlo simulations by generating one- and two-dimensional cross sections at a user-defined temperature before performing transport calculations. A finite difference method is used to Doppler-broaden cross sections to the desired temperature, and unit-base interpolation is done to generate the probability distributions for double differential two-dimensional thermal moderator cross sections at any arbitrarily user-defined temperature. The accuracy of these methods is tested using a variety of contrived problems. In addition, various benchmarks at elevated temperatures are modeled, and results are compared with benchmark results. The problem-dependent cross sections are observed to produce eigenvalue estimates that are closer to the benchmark results than those without the problem-dependent cross sections.

  19. Deconvolving instrumental and intrinsic broadening in core-shell x-ray spectroscopies

    International Nuclear Information System (INIS)

    Fister, T. T.; Seidler, G. T.; Rehr, J. J.; Kas, J. J.; Nagle, K. P.; Elam, W. T.; Cross, J. O.

    2007-01-01

    Intrinsic and experimental mechanisms frequently lead to broadening of spectral features in core-shell spectroscopies. For example, intrinsic broadening occurs in x-ray absorption spectroscopy (XAS) measurements of heavy elements where the core-hole lifetime is very short. On the other hand, nonresonant x-ray Raman scattering (XRS) and other energy loss measurements are more limited by instrumental resolution. Here, we demonstrate that the Richardson-Lucy (RL) iterative algorithm provides a robust method for deconvolving instrumental and intrinsic resolutions from typical XAS and XRS data. For the K-edge XAS of Ag, we find nearly complete removal of ∼9.3 eV full width at half maximum broadening from the combined effects of the short core-hole lifetime and instrumental resolution. We are also able to remove nearly all instrumental broadening in an XRS measurement of diamond, with the resulting improved spectrum comparing favorably with prior soft x-ray XAS measurements. We present a practical methodology for implementing the RL algorithm in these problems, emphasizing the importance of testing for stability of the deconvolution process against noise amplification, perturbations in the initial spectra, and uncertainties in the core-hole lifetime

  20. CH3Cl self-broadening coefficients and their temperature dependence

    International Nuclear Information System (INIS)

    Dudaryonok, A.S.; Lavrentieva, N.N.; Buldyreva, J.V.

    2013-01-01

    CH 3 35 Cl self-broadening coefficients at various temperatures of atmospheric interest are computed by a semi-empirical method particularly suitable for molecular systems with strong dipole–dipole interactions. In order to probe the dependence on the rotational number K, the model parameters are adjusted on extensive room-temperature measurements for K≤7 and allow reproducing fine features of J-dependences observed for K≤3; for higher K up to 20, the fitting is performed on specially calculated semi-classical values. The temperature exponents for the standard power law are extracted and validated by calculation of low-temperature self-broadening coefficients comparing very favorably with available experimental data. An extensive line-list of self-broadening coefficients at the reference temperature 296 K and associated temperature exponents for 0≤J≤70, 0≤K≤20 is provided as Supplementary material for their use in atmospheric applications and spectroscopic databases. -- Highlights: • We calculated methyl chloride self-broadening coefficients using two methods. • Rotational quantum numbers were J from 0 till 70 and K from 0 till 20. • The temperature exponents were calculated for every mentioned line

  1. The Broadening of Activities in the Financial System : Implications for Financial Stability and Regulation

    NARCIS (Netherlands)

    Wagner, W.B.

    2006-01-01

    Conglomeration and consolidation in the financial system broaden the activities financial institutions are undertaking and cause them to become more homogenous.Although resulting diversification gains make each institution appear less risky, we argue that financial stability may not improve as total

  2. Broadening Educational Outcomes: Social Relations, Skills Development, and Employability for Youth

    Science.gov (United States)

    Dejaeghere, Joan; Wiger, Nancy Pellowski; Willemsen, Laura Wangsness

    2016-01-01

    This article argues that, if a global development aim is to address educational inequalities, the post-2015 agenda needs to conceptually and practically broaden the focus of learning to include social relations as important processes and outcomes for achieving educational equity. We draw on Sen's capability approach and Bourdieu's forms of capital…

  3. An exact formalism for Doppler-broadened neutron cross-sections

    International Nuclear Information System (INIS)

    Catsaros, Nicolas.

    1985-07-01

    An exact formalism (Ψ, Φ) is proposed for the calculation of Breit-Wigner or Adler-Adler Doppler-broadened neutron cross-sections. The well-known (Ψ, Φ) formalism is shown to be a zero-order approximation of the generalized (Ψ, Φ) formalism. (author)

  4. Spectrally resolved four-wave mixing in semiconductors: Influence of inhomogeneous broadening

    DEFF Research Database (Denmark)

    Erland, J.; Pantke, K.-H.; Mizeikis, V.

    1994-01-01

    We study the influence of inhomogeneous broadening on results obtained from spectrally resolved transient four-wave mixing. In particular, we study the case where more resonances are coherently excited, leading to polarization interference or quantum beats, depending on the microscopic nature of ...

  5. Pressure broadening of atomic oxygen two-photon absorption laser induced fluorescence

    NARCIS (Netherlands)

    Marinov, D.; Drag, C.; Blondel, C.; Guaitella, O.; Golda, J.; Klarenaar, B.L.M.; Engeln, R.A.H.; Schulz-von der Gathen, V.; Booth, J.-P.

    2016-01-01

    Atomic oxygen, considered to be a determining reactant in plasma applications at ambient pressure, is routinely detected by two-photon absorption laser induced fluorescence (TALIF). Here, pressure broadening of the (2p 4 3 P 2  →  3p 3 P J=0,1,2) two-photon transition in oxygen atoms was

  6. Research component in MIS curriculum: A move towards broadening the radiography spectrum in scaling professional heights

    International Nuclear Information System (INIS)

    Kilaha, S.N.

    2006-01-01

    This paper attempts to provide an insight into what research is, why it is important for radiographers (Medical Imaging Technologists), the process of carrying out research in imaging technology, the potential areas for evidence - based research activities in the profession and how research can broaden the radiography spectrum in a bid to scale the professional heights

  7. Calculation of the Raman line broadening on carbonation in synthetic hydroxyapatite

    NARCIS (Netherlands)

    de Mul, F.F.M.; Otto, Cornelis; Greve, Jan; Arends, J.; ten Bosch, J.J.

    1988-01-01

    The position and broadening of the Raman band associated with the phosphate symmetric stretching vibration in hydroxyapatite are simulated using a simple inter- and intra-ionic potential. The results are compared with experimental values. This comparison was made as a function of the incorporation

  8. Development and validation of the fast doppler broadening module coupled within RMC code

    International Nuclear Information System (INIS)

    Yu Jiankai; Liang Jin'gang; Yu Ganglin; Wang Kan

    2015-01-01

    It is one of the efficient approach to reduce the memory consumption in Monte Carlo based reactor physical simulations by using the On-the-fly Doppler broadening for temperature dependent nuclear cross sections. RXSP is a nuclear cross sections processing code being developed by REAL team in Department of Engineering Physics in Tsinghua University, which has an excellent performance in Doppler broadening the temperature dependent continuous energy neutron cross sections. To meet the dual requirements of both accuracy and efficiency during the Monte Carlo simulations with many materials and many temperatures in it, this work enables the capability of on-the-fly pre-Doppler broadening cross sections during the neutron transport by coupling the Fast Doppler Broaden module in RXSP code embedded in the RMC code also being developed by REAL team in Tsinghua University. Additionally, the original OpenMP-based parallelism has been successfully converted into the MPI-based framework, being fully compatible with neutron transport in RMC code, which has achieved a vast parallel efficiency improvement. This work also provides a flexible approach to solve Monte Carlo based full core depletion calculation with many temperatures feedback in many isotopes. (author)

  9. Shift and broadening of emission lines in Nd 3: YAG laser crystal ...

    Indian Academy of Sciences (India)

    Home; Journals; Pramana – Journal of Physics; Volume 86; Issue 6. Shift and broadening of emission lines in Nd3+:YAG laser crystal influenced by input energy. POURMAND SEYED EBRAHIM REZAEI ... Keywords. Nd3+:YAG crystal; heat generation; three-level emission lines; four-level emission lines; input energy.

  10. The Organization as Client: Broadening the Concept of Employee Assistance Programs.

    Science.gov (United States)

    Googins, Bradley; Davidson, Bruce N.

    1993-01-01

    Notes that many employee assistance programs (EAPs) are broadening their function to address rapidly changing human and social issues of environments in which they operate, refocusing practice to include organization as the client. Discusses traditional EAP practice, evolution of EAPs, changes confronting corporations, and alternative model in…

  11. Influence of multiple small-angle neutron scattering on diffraction peak broadening in ferritic steel

    Czech Academy of Sciences Publication Activity Database

    Woo, W.; Em, V.; Shin, E.; Mikula, Pavol; Ryukhtin, Vasyl

    2015-01-01

    Roč. 48, APR (2015), s. 350-356 ISSN 0021-8898 R&D Projects: GA ČR GB14-36566G; GA MŠk(CZ) LM2011019 Institutional support: RVO:61389005 Keywords : peak broadening * small-angle neutron scattering * neutron diffraction * magnetic domain Subject RIV: BM - Solid Matter Physics ; Magnetism Impact factor: 3.720, year: 2014

  12. SIGMA1-2007, Doppler Broadening ENDF Format Linear-Linear. Interpolated Point Cross Section

    International Nuclear Information System (INIS)

    2007-01-01

    1 - Description of problem or function: SIGMA-1 Doppler broadens evaluated Cross sections given in the linear-linear interpolation form of the ENDF/B Format to one final temperature. The data is Doppler broadened, thinned, and output in the ENDF/B Format. IAEA0854/15: This version include the updates up to January 30, 2007. Changes in ENDF/B-VII Format and procedures, as well as the evaluations themselves, make it impossible for versions of the ENDF/B pre-processing codes earlier than PREPRO 2007 (2007 Version) to accurately process current ENDF/B-VII evaluations. The present code can handle all existing ENDF/B-VI evaluations through release 8, which will be the last release of ENDF/B-VI. 2 - Modifications from previous versions: Sigma-1 VERS. 2007-1 (Jan. 2007): checked against all ENDF/B-VII; increased page size from 60,000 to 360,000 energy points 3 - Method of solution: The energy grid is selected to ensure that the broadened data is linear-linear interpolable. SIGMA-1 starts from the free-atom Doppler broadening equations and adds the assumptions of linear data within the table and constant data outside the range of the table. If the Original data is not at zero Kelvin, the data is broadened by the effective temperature difference to the final temperature. If the data is already at a temperature higher than the final temperature, Doppler broadening is not performed. 4 - Restrictions on the complexity of the problem: The input to SIGMA-1 must be data which vary linearly in energy and cross section between tabulated points. The LINEAR program provides such data. LINEAR uses only the ENDF/B BCD Format tape and copies all sections except File 3 as read. Since File 3 data are in identical Format for ENDF/B Versions I through VI, the program can be used with all these versions. - The present version Doppler broadens only to one final temperature

  13. 47 CFR 22.909 - Cellular markets.

    Science.gov (United States)

    2010-10-01

    ... 47 Telecommunication 2 2010-10-01 2010-10-01 false Cellular markets. 22.909 Section 22.909... Cellular Radiotelephone Service § 22.909 Cellular markets. Cellular markets are standard geographic areas used by the FCC for administrative convenience in the licensing of cellular systems. Cellular markets...

  14. The role of the Frank-Starling law in the transduction of cellular work to whole organ pump function: a computational modeling analysis.

    Directory of Open Access Journals (Sweden)

    Steven A Niederer

    2009-04-01

    Full Text Available We have developed a multi-scale biophysical electromechanics model of the rat left ventricle at room temperature. This model has been applied to investigate the relative roles of cellular scale length dependent regulators of tension generation on the transduction of work from the cell to whole organ pump function. Specifically, the role of the length dependent Ca(2+ sensitivity of tension (Ca(50, filament overlap tension dependence, velocity dependence of tension, and tension dependent binding of Ca(2+ to Troponin C on metrics of efficient transduction of work and stress and strain homogeneity were predicted by performing simulations in the absence of each of these feedback mechanisms. The length dependent Ca(50 and the filament overlap, which make up the Frank-Starling Law, were found to be the two dominant regulators of the efficient transduction of work. Analyzing the fiber velocity field in the absence of the Frank-Starling mechanisms showed that the decreased efficiency in the transduction of work in the absence of filament overlap effects was caused by increased post systolic shortening, whereas the decreased efficiency in the absence of length dependent Ca(50 was caused by an inversion in the regional distribution of strain.

  15. Detection of HIV-RNA-positive monocytes in peripheral blood of HIV-positive patients by simultaneous flow cytometric analysis of intracellular HIV RNA and cellular immunophenotype.

    Science.gov (United States)

    Patterson, B K; Mosiman, V L; Cantarero, L; Furtado, M; Bhattacharya, M; Goolsby, C

    1998-04-01

    Determinations of plasma HIV viral RNA copy numbers help to define the kinetics of HIV-1 infection in vivo and to monitor antiretroviral therapy. However, questions remain regarding the identity of various infected cell types contributing to this free virus pool and to the in vivo lifecycle of HIV during disease progression. Characterization of a novel fluorescence in situ hybridization (FISH) assay employing a pool of labeled oligonucleotide probes directed against HIV RNA was done followed by coupling of the FISH assay with simultaneous surface immunophenotyping to address these questions. In vitro characterizations of this assay using tumor necrosis factor-alpha stimulated and unstimulated ACH-2 cells demonstrated the ability to detect < 5% HIV RNA positive cells with a sensitivity of < 30 RNA copies per cell. Peripheral blood mononuclear cells from 39 HIV-seropositive patients on no, single, combination, or triple drug therapy and 8 HIV-seronegative patients were examined. The majority of HIV-positive patients (24/39) harbored monocytes positive for HIV RNA and a significantly higher fraction of patients with high plasma viral load carried positive monocytes (13/16) than did patients in the low plasma viral load group (11/23). These results demonstrate the effectiveness of a novel FISH assay for identifying and monitoring HIV-infected cell populations in the peripheral blood of HIV-positive patients. In addition, monocytes are a major source of cellular HIV virus in the peripheral blood of HIV patients, even with progression of disease.

  16. Single cell-type analysis of cellular lipid remodelling in response to salinity in the epidermal bladder cells of the model halophyte Mesembryanthemum crystallinum.

    Science.gov (United States)

    Barkla, Bronwyn J; Garibay-Hernández, Adriana; Melzer, Michael; Rupasinghe, Thusitha W T; Roessner, Ute

    2018-05-29

    Salt stress causes dramatic changes in the organization and dynamic properties of membranes, however, little is known about the underlying mechanisms involved. Modified trichomes, known as epidermal bladder cells (EBC), on the leaves and stems of the halophyte Mesembryanthemum crystallinum can be successfully exploited as a single-cell-type system to investigate salt-induced changes to cellular lipid composition. In this study alterations in key molecular species from different lipid classes highlighted an increase in phospholipid species, particularly those from phosphatidylcholine (PC) and phosphatidic acid (PA), where the latter is central to the synthesis of membrane lipids. Triacylglycerol (TG) species decreased during salinity, while there was little change in plastidic galactolipids. EBC transcriptomic and proteomic data mining revealed changes in genes and proteins involved in lipid metabolism and the upregulation of transcripts for PIPKIB, PI5PII, PIPKIII, and PLDδ, suggested the induction of signalling processes mediated by phosphoinositides and PA. TEM and flow cytometry showed the dynamic nature of lipid droplets in these cells under salt stress. Altogether, this work indicates the metabolism of TG might play an important role in EBC response to salinity as either an energy reserve for sodium accumulation and/or driving membrane biosynthesis for EBC expansion. This article is protected by copyright. All rights reserved.

  17. Schistosoma mansoni: analysis of the humoral and cellular basis of resistance in guinea-pigs vaccinated with radiation-attenuated cercariae

    International Nuclear Information System (INIS)

    McLaren, D.J.; Delgado, V.S.; Gordon, J.R.; Rogers, M.V.

    1990-01-01

    This study addresses the humoral and cellular basis of specific acquired immunity in the guinea-pig irradiated vaccine model of schistosomiasis mansoni. Rodents vaccinated with 500 gamma-irradiated cercariae and then splenectomized 4. 5 weeks later showed a 33% reduction in resistance to challenge as compared to vaccinated animals or vaccinated/sham splenectomized controls. Serum harvested from once vaccinated individuals conferred modest levels of resistance upon naive recipients in some experiments, but transfer was not achieved consistently. Serum from vaccinated and thrice boosted rodents (Vbbb) routinely transferred about 45% immunity, however, provided it was given in 4 ml aliquots on day 9 post-challenge; Vbbb serum thus transferred 50% of donor immunity. Interestingly, multiple doses of this protective serum given on and either side of day 9 did not enhance the protection achieved with a single 4 ml aliquot. Neither peripheral lymph node cells nor splenocytes from the polyvaccinated serum donors were able to transfer resistance to recipient guinea-pigs and they failed to augment the protection achieved with Vbbb serum. Foot-pad testing revealed no correlation between delayed hypersensitivity responses and immunity to challenge in vaccinated guinea-pigs. Polyvaccine guinea-pig serum failed to protect mice and guinea-pigs could not be protected with polyvaccine rat serum. (author)

  18. A new formulation for the Doppler broadening function relaxing the approximations of Beth–Plackzec

    International Nuclear Information System (INIS)

    Palma, Daniel A.P.; Gonçalves, Alessandro C.; Martinez, Aquilino S.; Mesquita, Amir Z.

    2016-01-01

    Highlights: • One of the Beth–Placzek approximation were relaxed. • An additional term in the form of an integral is obtained. • A new mathematical formulation for the Doppler broadening function is proposed. - Abstract: In all nuclear reactors some neutrons can be absorbed in the resonance region and, in the design of these reactors, an accurate treatment of the resonant absorptions is essential. Apart from that, the resonant absorption varies with fuel temperature due to the Doppler broadening of the resonances. The thermal agitation movement in the reactor core is adequately represented in the microscopic cross-section of the neutron-core interaction through the Doppler broadening function. This function is calculated numerically in modern systems for the calculation of macro-group constants, necessary to determine the power distribution of a nuclear reactor. It can also be applied to the calculation of self-shielding factors to correct the measurements of the microscopic cross-sections through the activation technique and used for the approximate calculations of the resonance integrals in heterogeneous fuel cells. In these types of application we can point at the need to develop precise analytical approximations for the Doppler broadening function to be used in the calculation codes that calculate the values of this function. However, the Doppler broadening function is based on a series of approximations proposed by Beth–Plackzec. In this work a relaxation of these approximations is proposed, generating an additional term in the form of an integral. Analytical solutions of this additional term are discussed. The results obtained show that the new term is important for high temperatures.

  19. Cellular Automata on Graphs: Topological Properties of ER Graphs Evolved towards Low-Entropy Dynamics

    Directory of Open Access Journals (Sweden)

    Marc-Thorsten Hütt

    2012-06-01

    Full Text Available Cellular automata (CA are a remarkably  efficient tool for exploring general properties of complex systems and spatiotemporal patterns arising from local rules. Totalistic cellular automata,  where the update  rules depend  only on the density of neighboring states, are at the same time a versatile  tool for exploring  dynamical  processes on graphs. Here we briefly review our previous results on cellular automata on graphs, emphasizing some systematic relationships between network architecture and dynamics identified in this way. We then extend the investigation  towards graphs obtained in a simulated-evolution procedure, starting from Erdő s–Rényi (ER graphs and selecting for low entropies of the CA dynamics. Our key result is a strong association of low Shannon entropies with a broadening of the graph’s degree distribution.

  20. Comparative genomic analysis of buffalo (Bubalus bubalis NOD1 and NOD2 receptors and their functional role in in-vitro cellular immune response.

    Directory of Open Access Journals (Sweden)

    Biswajit Brahma

    Full Text Available Nucleotide binding and oligomerization domain (NOD-like receptors (NLRs are innate immune receptors that recognize bacterial cell wall components and initiate host immune response. Structure and function of NLRs have been well studied in human and mice, but little information exists on genetic composition and role of these receptors in innate immune system of water buffalo--a species known for its exceptional disease resistance. Here, a comparative study on the functional domains of NOD1 and NOD2 was performed across different species. The NOD mediated in-vitro cellular responses were studied in buffalo peripheral blood mononuclear cells, resident macrophages, mammary epithelial, and fibroblast cells. Buffalo NOD1 (buNOD1 and buNOD2 showed conserved domain architectures as found in other mammals. The domains of buNOD1 and buNOD2 showed analogy in secondary and tertiary conformations. Constitutive expressions of NODs were ubiquitous in different tissues. Following treatment with NOD agonists, peripheral lymphocytes showed an IFN-γ response along-with production of pro-inflammatory cytokines. Alveolar macrophages and mammary epithelial cells showed NOD mediated in-vitro immune response through NF-κB dependent pathway. Fibroblasts showed pro-inflammatory cytokine response following agonist treatment. Our study demonstrates that both immune and non-immune cells could generate NOD-mediated responses to pathogens though the type and magnitude of response depend on the cell types. The structural basis of ligand recognition by buffalo NODs and knowledge of immune response by different cell types could be useful for development of non-infective innate immune modulators and next generation anti-inflammatory compounds.

  1. MSAT and cellular hybrid networking

    Science.gov (United States)

    Baranowsky, Patrick W., II

    Westinghouse Electric Corporation is developing both the Communications Ground Segment and the Series 1000 Mobile Phone for American Mobile Satellite Corporation's (AMSC's) Mobile Satellite (MSAT) system. The success of the voice services portion of this system depends, to some extent, upon the interoperability of the cellular network and the satellite communication circuit switched communication channels. This paper will describe the set of user-selectable cellular interoperable modes (cellular first/satellite second, etc.) provided by the Mobile Phone and described how they are implemented with the ground segment. Topics including roaming registration and cellular-to-satellite 'seamless' call handoff will be discussed, along with the relevant Interim Standard IS-41 Revision B Cellular Radiotelecommunications Intersystem Operations and IOS-553 Mobile Station - Land Station Compatibility Specification.

  2. MIMO Communication for Cellular Networks

    CERN Document Server

    Huang, Howard; Venkatesan, Sivarama

    2012-01-01

    As the theoretical foundations of multiple-antenna techniques evolve and as these multiple-input multiple-output (MIMO) techniques become essential for providing high data rates in wireless systems, there is a growing need to understand the performance limits of MIMO in practical networks. To address this need, MIMO Communication for Cellular Networks presents a systematic description of MIMO technology classes and a framework for MIMO system design that takes into account the essential physical-layer features of practical cellular networks. In contrast to works that focus on the theoretical performance of abstract MIMO channels, MIMO Communication for Cellular Networks emphasizes the practical performance of realistic MIMO systems. A unified set of system simulation results highlights relative performance gains of different MIMO techniques and provides insights into how best to use multiple antennas in cellular networks under various conditions. MIMO Communication for Cellular Networks describes single-user,...

  3. The Role of Positive Emotions in Positive Psychology: The Broaden-and-Build Theory of Positive Emotions.

    Science.gov (United States)

    Fredrickson, Barbara L.

    2001-01-01

    Describes the broaden-and-build theory of positive emotions, situating it within the field of positive psychology. The theory posits that experiences of positive emotions broaden people's momentary thought-action repertoires, which in turn build their enduring personal resources (physical, intellectual, social, and psychological). Reviews…

  4. Magnon Broadening Effects in Double Layered Manganite La_1.2 Sr_1.8 Mn_2 O_7

    OpenAIRE

    Furukawa, Nobuo; Hirota, Kazuma

    1999-01-01

    Magnon linewidth of La_1.2 Sr_1.8 Mn_2 O_7 near the Brillouin zone boundary is investigated from both theoretical and experimental points of view. Abrupt magnon broadening is ascribed to a strong magnon-phonon coupling. Magnon broadening observed in cubic perovskite manganites is also discussed.

  5. Programmable cellular arrays. Faults testing and correcting in cellular arrays

    International Nuclear Information System (INIS)

    Cercel, L.

    1978-03-01

    A review of some recent researches about programmable cellular arrays in computing and digital processing of information systems is presented, and includes both combinational and sequential arrays, with full arbitrary behaviour, or which can realize better implementations of specialized blocks as: arithmetic units, counters, comparators, control systems, memory blocks, etc. Also, the paper presents applications of cellular arrays in microprogramming, in implementing of a specialized computer for matrix operations, in modeling of universal computing systems. The last section deals with problems of fault testing and correcting in cellular arrays. (author)

  6. Image Encryption and Chaotic Cellular Neural Network

    Science.gov (United States)

    Peng, Jun; Zhang, Du

    Machine learning has been playing an increasingly important role in information security and assurance. One of the areas of new applications is to design cryptographic systems by using chaotic neural network due to the fact that chaotic systems have several appealing features for information security applications. In this chapter, we describe a novel image encryption algorithm that is based on a chaotic cellular neural network. We start by giving an introduction to the concept of image encryption and its main technologies, and an overview of the chaotic cellular neural network. We then discuss the proposed image encryption algorithm in details, which is followed by a number of security analyses (key space analysis, sensitivity analysis, information entropy analysis and statistical analysis). The comparison with the most recently reported chaos-based image encryption algorithms indicates that the algorithm proposed in this chapter has a better security performance. Finally, we conclude the chapter with possible future work and application prospects of the chaotic cellular neural network in other information assurance and security areas.

  7. Cellular automata in image processing and geometry

    CERN Document Server

    Adamatzky, Andrew; Sun, Xianfang

    2014-01-01

    The book presents findings, views and ideas on what exact problems of image processing, pattern recognition and generation can be efficiently solved by cellular automata architectures. This volume provides a convenient collection in this area, in which publications are otherwise widely scattered throughout the literature. The topics covered include image compression and resizing; skeletonization, erosion and dilation; convex hull computation, edge detection and segmentation; forgery detection and content based retrieval; and pattern generation. The book advances the theory of image processing, pattern recognition and generation as well as the design of efficient algorithms and hardware for parallel image processing and analysis. It is aimed at computer scientists, software programmers, electronic engineers, mathematicians and physicists, and at everyone who studies or develops cellular automaton algorithms and tools for image processing and analysis, or develops novel architectures and implementations of mass...

  8. Top-down cellular pyramids

    Energy Technology Data Exchange (ETDEWEB)

    Wu, A Y; Rosenfeld, A

    1983-10-01

    A cellular pyramid is an exponentially tapering stack of arrays of processors (cells), where each cell is connected to its neighbors (siblings) on its own level, to a parent on the level above, and to its children on the level below. It is shown that in some situations, if information flows top-down only, from fathers to sons, then a cellular pyramid may be no faster than a one-level cellular array; but it may be possible to use simpler cells in the pyramid case. 23 references.

  9. Doppler and time-travel broadening in ICR plasma isotope separation

    International Nuclear Information System (INIS)

    Karchevskii, A.I.; Potanin, E.P.

    1994-01-01

    Isotopically-selective ion-cyclotron resonance (ICR) heating is one of the most promising plasma isotope separation methods. The separation degree of ICR separation in a plasma depends on the resonance heating selectivity. The selectivity is due to the isotopically-adjacent accelerated ions resonance curve overlapping and therefore, is determined by the width of the resonance curves. In the case of a collisionless plasma in an ideal homogeneous longitudinal magnetic field, the line broadening is mainly determined by Doppler and time-travel effects. These effects differ in nature, and one has some difficulties in distinguishing them when interpreting the resonance curves because both broadenings depend on ion axial velocities. We consider the simplest case: the extrenal heating alternating electric field does not depend on the axial coordinate (the wave number γ = 0). Hence, in this case the Doppler effect does not occur

  10. Solitary waves of surface plasmon polariton via phase shifts under Doppler broadening and Kerr nonlinearity

    Science.gov (United States)

    Ahmad, S.; Ahmad, A.; Bacha, B. A.; Khan, A. A.; Abdul Jabar, M. S.

    2017-12-01

    Surface Plasmon Polaritons (SPPs) are theoretically investigated at the interface of a dielectric metal and gold. The output pulse from the dielectric is used as the input pulse for the generation of SPPs. The SPPs show soliton-like behavior at the interface. The solitary form of a SPP is maintained under the effects of Kerr nonlinearity, Doppler broadening and Fresnel dragging whereas its phase shift is significantly modified. A 0.3radian phase shift is calculated in the presence of both Kerr nonlinearity and Fresnel dragging in the absence of plasma motion. The phase shift is enhanced to 60radian due to the combined effect of Doppler broadening, Kerr nonlinearity and Fresnel dragging. The results may have significant applications in nano-photonics, optical tweezers, photovoltaic devices, plasmonster and sensing technology.

  11. In-medium jet evolution: interplay between broadening and decoherence effects

    CERN Document Server

    Apolinário, Liliana; Milhano, Guilherme; Salgado, Carlos A.

    2016-01-01

    The description of the modifications of the coherence pattern in a parton shower, in the presence of a QGP, has been actively addressed in recent studies. Among the several achievements, finite energy corrections, transverse momentum broadening due to medium interactions and interference effects between successive emissions have been extensively improved as they seem to be essential features for a correct description of the results obtained in heavy-ion collisions. In this work, based on the insights of our previous work [1], we explore the physical interplay between broadening and decoherence, by generalising previous studies of medium-modifications of the antenna spectrum [2, 3, 4] - so far restricted to the case where transverse motion is neglected. The result allow us to identify two quantities controlling the decoherence of a medium modified shower that can be used as building blocks for a successful future generation of jet quenching Monte Carlo simulators: a generalisation of the $\\Delta_{med}$ paramet...

  12. A new expression for doppler broadening function based on Fourier Cosine Transform

    Energy Technology Data Exchange (ETDEWEB)

    Goncalves, Alessandro da C.; Martinez, Aquilino S.; Silva, Fernando C. da [Universidade Federal, Rio de Janeiro, RJ (Brazil). Coordenacao dos Programas de Pos-graduacao de Engenharia. Programa de Engenharia Nuclear]. E-mails: agoncalves@con.ufrj.br; aquilino@lmp.ufrj.br; fernando@con.ufrj.br

    2007-07-01

    The main objective of this paper consists of the derivation of an analytical solution for the Doppler broadening function {psi} ({xi}, x). The analytical solution is derived from a new integral expression for the {psi} ({xi}, x) function, which can be interpreted as a Fourier cosine transform. The expression obtained for {psi} ({xi}, x) in terms of elementary functions, proved quite simple and accurate, leading to a similar solution obtained through the differential equation for the {psi} ({xi}, x) function, using the methods of Frobenius and of parameter variation. The Doppler broadening function is widely used in applications related to the treatment of nuclear resonances, calculations of multigroup parameters and resonance self-shielding factors, and to correct microscopic cross section measurements through the activation technique. (author)

  13. A new expression for doppler broadening function based on Fourier Cosine Transform

    International Nuclear Information System (INIS)

    Goncalves, Alessandro da C.; Martinez, Aquilino S.; Silva, Fernando C. da

    2007-01-01

    The main objective of this paper consists of the derivation of an analytical solution for the Doppler broadening function Ψ (ξ, x). The analytical solution is derived from a new integral expression for the Ψ (ξ, x) function, which can be interpreted as a Fourier cosine transform. The expression obtained for Ψ (ξ, x) in terms of elementary functions, proved quite simple and accurate, leading to a similar solution obtained through the differential equation for the Ψ (ξ, x) function, using the methods of Frobenius and of parameter variation. The Doppler broadening function is widely used in applications related to the treatment of nuclear resonances, calculations of multigroup parameters and resonance self-shielding factors, and to correct microscopic cross section measurements through the activation technique. (author)

  14. Stark broadening of the 1640- and 4686-A lines of ionized helium

    International Nuclear Information System (INIS)

    Greene, R.L.

    1976-01-01

    The Stark-broadened profiles of the 1640- and 4686-A lines of ionized helium have been calculated using an approximation to the electron broadening operator in the unified classical-path theory of Smith, Vidal, and Cooper. The approximation is such that the results reproduce the time-ordered impact-theory results in the line center, and the ionized-radiator quasistatic results in the far wings. Sample calculations at n/sub e/ = 10/sup 17/ cm/sup -3/ and T = 40 000 degreeK are found to give significantly more narrow profiles than the corresponding modified-impact-theory results because of a different treatment of the lower-state interaction. Indirect comparison with experiment indicates that the calculated lines are too narrow, but it is expected that the inclusion of neglected effects of ion dynamics and inelastic collisions would improve agreement

  15. Resonant Magnetization Tunneling in Molecular Magnets: Where is the Inhomogeneous Broadening?

    Science.gov (United States)

    Friedman, Jonathan R.; Sarachik, M. P.

    1998-03-01

    Since the discovery(J. R. Friedman, et al., Phys. Rev. Lett. 76), 3830 (1996) of resonant magnetization tunneling in the molecular magnet Mn_12 there has been intense research into the underlying mechanism of tunneling. Most current theories( V. Dobrovitski and A. Zvezdin, Europhys. Lett. 38), 377 (1997); L. Gunther, Europhys. Lett. 39, 1 (1997); D Garanin and E. Chudnovsky, Phys. Rev. B 56, 11102 (1997). suggest that a local internal (hyperfine or dipole) field transverse to the easy magnetization axis induces tunneling. These theories predict a resonance width orders of magnitude smaller than that actually observed. This discrepancy is attributed to inhomogeneous broadening of the resonance by the random internal fields. We present a detailed study of the tunnel resonance lineshape and show that it is Lorentzian, suggesting it has a deeper physical origin. Since the hyperfine fields are believed to be comparable to the observed width, it is surprising that there is no Gaussian broadening.

  16. Gamma-ray induced Doppler broadening and the determination of lifetimes of excited nuclear states

    International Nuclear Information System (INIS)

    Boerner, H.G.; Jolie, J.; Robinson, S.J.; Kessler, E.G.; Dewey, S.M.; Greene, G.; Deslattes, R.; Ulbig, S.; Lieb, K.P.; Casten, R.F.; Krusche, B.; Cizewski, J.A.

    1990-01-01

    Measurements of lifetimes of excited states in nuclei yield crucial information for sensitive tests of nuclear models. Here a novel method will be discussed which involves the GRID (Gamma Ray Induced Doppler broadening) technique, in which Doppler broadening is observed in a transition from a nucleus recoiling from the emission of a previous gamma ray. As the recoil energy is extremely small, ultra-high energy resolving power has to be used. To date all such experiments have been carried out at ILL using the GAMS4 double flat crystal spectrometer which is operated in a NIST-ILL collaboration. The method can be used for all lifetimes below a few picoseconds. The wide range of applicability, together with the very exhaustive set of data often obtained, is an advantage with respect to many other methods. The characteristic features of GRID will be discussed using some selected examples. 21 refs., 8 figs

  17. Broadening participation in Natural Sciences and Mathematics at the University of Maryland Baltimore County

    Science.gov (United States)

    Rous, Philip

    2013-03-01

    Over the past two decades, UMBC has undertaken a series of efforts to broaden participation in the natural sciences and mathematics, beginning with the establishment of the Meyerhoff program. Using as examples the multiple initiatives that followed, and with a focus on the challenge of increasing access and success of all students who enter as both freshmen and transfer students, I will describe a model of culture change that we have employed repeatedly to understand and guide our efforts in broadening participation. Particular attention will be paid to the concept of cultural capital, the role of innovators and the challenge of scaling small-scale innovations towards institutional change. Supported by the National Science Foundation and the Bill and Melinda Gates Foundation.

  18. Red Shift and Broadening of Backward Harmonic Radiation from Electron Oscillations Driven by Femtosecond Laser Pulse

    International Nuclear Information System (INIS)

    Tian Youwei; Yu Wei; Lu Peixiang; Senecha, Vinod K; Han, Xu; Deng Degang; Li Ruxin; Xu Zhizhan

    2006-01-01

    The characteristics of backward harmonic radiation due to electron oscillations driven by a linearly polarized fs laser pulse are analysed considering a single electron model. The spectral distributions of the electron's backward harmonic radiation are investigated in detail for different parameters of the driver laser pulse. Higher order harmonic radiations are possible for a sufficiently intense driving laser pulse. We have shown that for a realistic pulsed photon beam, the spectrum of the radiation is red shifted as well as broadened because of changes in the longitudinal velocity of the electrons during the laser pulse. These effects are more pronounced at higher laser intensities giving rise to higher order harmonics that eventually leads to a continuous spectrum. Numerical simulations have further shown that by increasing the laser pulse width the broadening of the high harmonic radiations can be controlled

  19. Compact extended model for doppler broadening of neutron absorption resonances in solids

    International Nuclear Information System (INIS)

    Villanueva, A. J; Granada, J.R

    2009-01-01

    We present a simplified compact model for calculating Doppler broadening of neutron absorption resonances in an incoherent Debye solid. Our model extends the effective temperature gas model to cover the whole range of energies and temperatures, and reduces the information of the dynamical system to a minimum content compatible with a much better accuracy of the calculation. This model is thus capable of replacing the existing algorithm in standard codes for resonance cross sections preparation aimed at neutron and reactor physics calculations. The model is applied to the 238 U 6.671 eV effective broadened cross section. We also show how this model can be used for thermometry in an improved fashion compared to the effective temperature gas model. Experimental data of the same resonance at low and high temperatures are also shown and the performances of each model are put to the test on this basis. [es

  20. Energy level broadening effect on the equation of state of hot dense Al and Au plasma

    International Nuclear Information System (INIS)

    Hou Yong; Jin Fengtao; Yuan Jianmin

    2007-01-01

    In the hot dense matter regime, the isothermal equation of state (EOS) of Al and Au is calculated using an average-atom (AA) model in which the broadening of energy levels of atoms and ions are accounted for by using with a Gaussian distribution of the density of states. The distribution of bound electrons in the energy bands is determined by the continuum Fermi-Dirac distribution. With a self-consistent field average atoms scheme, it is shown that the energy-level broadening has a significant effect on the isothermal equation of state (EOS) of Al and Au in the hot dense matter regime. The jumps in the equation of state (EOS) induced by pressure ionization of the one-electron orbital with the increase in density, which often occur in the normal average-atom model and have been avoided by generally introducing the pseudo-shape resonance states, disappear naturally